Usage: mixcr exportPlots overlap [--metadata <path.tsv>] [--filter <meta(|>|>=|=|<=|<)value>[,<meta
                                 (|>|>=|=|<=|<)value>...]]... [--chains <chain>[,<chain>...]]...
                                 [--no-dendro] [--color-key <meta>]... [--fill-diagonal] [--metric
                                 <metric>]... [--palette <s>] [--h-labels-size <d>]
                                 [--v-labels-size <d>] [--width <n>] [--height <n>] [--no-warnings]
                                 [--verbose] [--help] pa.json[.gz] output.(pdf|eps|svg|png|jpeg)
Export overlap heatmaps
      pa.json[.gz]          Input file with postanalysis results.
      output.(pdf|eps|svg|png|jpeg)
                            Output PDF/EPS/PNG/JPEG file name.
      --metadata <path.tsv> Metadata file in a tab- (`.tsv`) or comma- (`.csv`) separated form.
                              Must contain `sample` column which matches names of input files.
      --filter <meta(|>|>=|=|<=|<)value>[,<meta(|>|>=|=|<=|<)value>...]
                            Filter samples to put on a plot by their metadata values. Filter allows
                              equality (`species=cat`) or arithmetic comparison (`age>=10`) etc.
      --chains <chain>[,<chain>...]
                            Export only for specified immunological chains.
      --no-dendro           Don't add dendrograms
      --color-key <meta>    Add color key layer to the heatmap. One may write `--color-key x_meta`
                              to draw color key horizontally (default) or `--color-key y_meta` to
                              draw vertically.
      --fill-diagonal       Fill diagonal line
      --metric <metric>     Select specific metrics to export.
                            Possible values are: SharedClonotypes, RelativeDiversity, F1Index,
                              F2Index, JaccardIndex, Pearson, PearsonAll
      --palette <s>         Color palette for heatmap. Available names: diverging, viridis2magma,
                              lime2rose, blue2red, teal2red, softSpectral, sequential, viridis,
                              magma, sunset, rainbow, salinity, density.
                              Default: density
      --h-labels-size <d>   Width of horizontal labels. One unit corresponds to the width of one
                              tile.
      --v-labels-size <d>   Height of vertical labels. One unit corresponds to the height of one
                              tile.
      --width <n>           Plot width.
      --height <n>          Plot height.
      -nw, --no-warnings    Suppress all warning messages.
      --verbose             Verbose messages.
  -h, --help                Show this help message and exit.
