Usage: mixcr exportPlots diversity [--metadata <path.tsv>] [--filter <meta(|>|>=|=|<=|<)value>[,
                                   <meta(|>|>=|=|<=|<)value>...]]... [--chains <chain>[,
                                   <chain>...]]... [--metric <metric>[,<metric>...]]...
                                   [--plot-type <plotType>] [--primary-group <meta>]
                                   [--primary-group-values <value>[,<value>...]]...
                                   [--secondary-group <meta>] [--secondary-group-values <value>[,
                                   <value>...]]... [--facet-by <meta>] [--hide-overall-p-value]
                                   [--pairwise-comparisons] [--ref-group <refGroup>]
                                   [--hide-non-significant] [--paired] [--method <method>]
                                   [--method-multiple-groups <method>] [--p-adjust-method <method>]
                                   [--show-significance] [--width <n>] [--height <n>]
                                   [--no-warnings] [--verbose] [--help] pa.json[.gz] output.
                                   (pdf|eps|svg|png|jpeg)
Export diversity metrics
      pa.json[.gz]          Input file with postanalysis results.
      output.(pdf|eps|svg|png|jpeg)
                            Output PDF/EPS/PNG/JPEG file name.
      --metadata <path.tsv> Metadata file in a tab- (`.tsv`) or comma- (`.csv`) separated form.
                              Must contain `sample` column which matches names of input files.
      --filter <meta(|>|>=|=|<=|<)value>[,<meta(|>|>=|=|<=|<)value>...]
                            Filter samples to put on a plot by their metadata values. Filter allows
                              equality (`species=cat`) or arithmetic comparison (`age>=10`) etc.
      --chains <chain>[,<chain>...]
                            Export only for specified immunological chains.
      --metric <metric>[,<metric>...]
                            Output only specified list of metrics.
                            Possible values are: observed, shannonWiener, chao1,
                              normalizedShannonWienerIndex, inverseSimpsonIndex, giniIndex, d50,
                              efronThisted
      --plot-type <plotType>
                            Plot type. Possible values: boxplot, boxplot-bindot, boxplot-jitter,
                              violin, violin-bindot, barplot, barplot-stacked, lineplot,
                              lineplot-jitter, lineplot-bindot, scatter
  -p, --primary-group <meta>
                            Specify metadata column used to group datasets.
      -pv, --primary-group-values <value>[,<value>...]
                            List of comma separated primary group values.
  -s, --secondary-group <meta>
                            Secondary group.
      -sv, --secondary-group-values <value>[,<value>...]
                            List of comma separated secondary group values.
      --facet-by <meta>     Specify metadata column to use for plotting facets.
      --hide-overall-p-value
                            Hide overall p-value.
      --pairwise-comparisons
                            Show pairwise p-value comparisons.
      --ref-group <refGroup>
                            Reference group for compare means statistics. Can be 'all' or some
                              specific value.
      --hide-non-significant
                            Hide non-significant observations.
      --paired              Do paired analysis
      --method <method>     Statistical test method. Available methods: TTest, Wilcoxon, ANOVA,
                              KruskalWallis, KolmogorovSmirnov.
                              Default: Wilcoxon
      --method-multiple-groups <method>
                            Test method for multiple groups comparison. Available methods: TTest,
                              Wilcoxon, ANOVA, KruskalWallis, KolmogorovSmirnov.
                              Default: Kruskal-Wallis
      --p-adjust-method <method>
                            Method used to adjust p-values. Available methods: none,
                              BenjaminiHochberg, BenjaminiYekutieli, Bonferroni, Hochberg, Holm,
                              Hommel.
                              Default: Holm
      --show-significance   Show significance levels instead of p-values ( `ns` for p-value >=
                              0.05, `***` for p-value < 0.0001,  `**` for p-value < 0.001, `*` in
                              other case).
      --width <n>           Plot width.
      --height <n>          Plot height.
      -nw, --no-warnings    Suppress all warning messages.
      --verbose             Verbose messages.
  -h, --help                Show this help message and exit.
