Usage: mixcr assembleContigs [--ignore-tags] [--assemble-contigs-by <gene_features>]
                             [--assemble-longest-contigs] [-O <key=value>]... [--report <path>]
                             [--json-report <path>] [--threads <n>] [--force-overwrite]
                             [--no-warnings] [--verbose] [--help] clones.clna clones.clns
Assemble full sequences.
      clones.clna            Path to input clna file
      clones.clns            Path where to write assembled clones.
      --ignore-tags          Ignore tags (UMIs, cell-barcodes).
                               Default value determined by the preset.
      --assemble-contigs-by <gene_features>
                             Selects the region of interest for the action. Clones will be
                               separated if inconsistent nucleotides will be detected in the
                               region, assembling procedure will be limited to the region, and only
                               clonotypes that fully cover the region will be outputted, others
                               will be filtered out.
      --assemble-longest-contigs
                             Contigs with maximum possible length will be assembled.
  -O  <key=value>            Overrides for the assembler parameters.
  -r, --report <path>        Report file (human readable version, see `-j / --json-report` for
                               machine readable report).
  -j, --json-report <path>   JSON formatted report file.
  -t, --threads <n>          Processing threads
  -f, --force-overwrite      Force overwrite of output file(s).
      -nw, --no-warnings     Suppress all warning messages.
      --verbose              Verbose messages.
  -h, --help                 Show this help message and exit.
