#!/usr/bin/env bash

set -euxo pipefail

mixcr analyze --verbose exome-seq \
    --assemble-longest-contigs \
    --species hs \
    single_cell_vdj_t_subset_R1.fastq.gz single_cell_vdj_t_subset_R2.fastq.gz case023

[[ -f case023.clna ]] || exit 1
