This folder includes a small number of proteins/protein pairs for testing purposes as shown in the README in the main folder.

Running the following command inside the test/ directory will create a database of fingerprints:

```
python ../src/make_db.py --fafile example.fasta --dbfile example
```

And this command to search the database against itself:

```
python ../src/query_db.py --query example.fasta --db example.db --out example-search.txt --khits 50
```