# GeneMark-ETP

Gene finding in eukaryotic genomes by GeneMark-ETP  

## Reference

GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes
Tomas Bruna, Alexandre Lomsadze, Mark Borodovsky  
Genome Research 
doi: 10.1101/gr.278373.123 
Georgia Institute of Technology, Atlanta, Georgia, USA  

## Experiments

The repository with documentation of experiments, data, and results for the GeneMark-ETP project is available at https://github.com/gatech-genemark/GeneMark-ETP-exp  

## Instructions

Usage:
```
gmetp.pl --cores 32 --cfg input.cfg
```
Examples of input configuration files can be found at https://github.com/gatech-genemark/GeneMark-ETP-expi  

## Software license

### GeneMark-ETP pipeline

GeneMark-ETP is distributed under Creative Commons Attribution NonCommercial ShareAlike 4.0 License.
See the [full text of the license](License-Creative-Commons-Attribution-NonCommercial-ShareAlike-4.0.txt).  

### Third-party tools

Third-party tools are in the folder "tools." These tools are distributed under the licensing terms of the respective license holders. For details, see the installation instructions and corresponding references.

