# mirna_embryo_pausing

## Overview

This is the public repository for the bioinformatics analyses of the paper titled
"Combinatorial microRNA activity is essential for the transition of pluripotent cells from
proliferation into dormancy" by D Iyer, L Moyon et al.

## Analyses

- miRNA small RNA-seq differential expression analysis results: [README](subprojects/mirna_ivv_ivt_dea_integration/README.md)
- proteomics analysis: [README](subprojects/proteomics_ivt/README.md)
- multiomics network analysis: [README](subprojects/multiomics_network_integration/README.md)
- miRNA promoters motif analysis: [README](subprojects/promoters_miRNAs_motifs/README.md)
- Cut-and-tag of TFE3 candidate TF analysis: [README](subprojects/cutandtag_tfe3/README.md)

## Changelog

- 2024-04-08: added all notebooks for data analysis and visualization + V1.0.0 release.
