Supplemental_Data

<!DOCTYPE html>

Orthogroup analysis

library(tidyverse)

Registered S3 method overwritten by 'dplyr':
  method           from
  print.rowwise_df     
Registered S3 methods overwritten by 'dbplyr':
  method         from
  print.tbl_lazy     
  print.tbl_sql      
[30m── [1mAttaching packages[22m ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.0 ──[39m
[30m[32m✓[30m [34mggplot2[30m 3.2.1     [32m✓[30m [34mpurrr  [30m 0.3.3
[32m✓[30m [34mtibble [30m 2.1.3     [32m✓[30m [34mdplyr  [30m 0.8.3
[32m✓[30m [34mtidyr  [30m 1.0.0     [32m✓[30m [34mstringr[30m 1.4.0
[32m✓[30m [34mreadr  [30m 1.3.1     [32m✓[30m [34mforcats[30m 0.4.0[39m
[30m── [1mConflicts[22m ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
[31mx[30m [34mdplyr[30m::[32mfilter()[30m masks [34mstats[30m::filter()
[31mx[30m [34mdplyr[30m::[32mlag()[30m    masks [34mstats[30m::lag()[39m

library(viridis)

Loading required package: viridisLite

Read orthogroup table

ortho_counts <- read.table("Orthogroups.GeneCount_dec_20.csv")
ortho_counts

ortho_binary <- ortho_counts[,1:49] #Remove the Totals column
ortho_binary[ortho_binary >= 1] <- 1 #Convert to presence/absence
#ortho_binary[33325,] # The end of the file is single gene orthogroups (unassigned, singletons)
ortho_binary_names <- ortho_binary %>% mutate(ortho_id = row.names(ortho_counts), gene_counts = rowSums(ortho_counts))

Read taxonomy table

taxonomy <- read_csv("taxonomy_run3.csv")

Parsed with column specification:
cols(
  species = [31mcol_character()[39m,
  clade = [31mcol_character()[39m
)

taxonomy

Functions

Present in at least one of X, absent in all of Y

default species for Y: all species not in X

species_comp outputs text: number of orthogroups and total number of genes in orthogroups

species_comp_num outputs integers

# species_names is a vector of species names
species_comp <- function(species_in, species_out, number_select_species = length(species_in)){
  if (missing(species_out)){
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(-species_in)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    gene_number <- sum(ortho_counts[specific_orthogroups$ortho_id,species_in])
    out_species_names <- "all other species"
  }
  else{
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(species_out)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    out_species_names <- paste(colnames(other_species), collapse = ",")
    gene_number <- sum(rowSums(ortho_counts[specific_orthogroups$ortho_id,species_in]))
  }
  ortho_number <- nrow(specific_orthogroups)
  in_species_names <- paste(colnames(select_species), collapse = ",")
  output <- paste("present in: ", in_species_names, "\n", "absent in: ", out_species_names, "\n", "number of orthogroups: ", ortho_number, "\n", "number of genes: ",gene_number,  sep = "")
  cat(output)
  }

species_comp_num <- function(species_in, species_out, number_select_species = length(species_in)){
  if (missing(species_out)){
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(-species_in)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    gene_number <- sum(ortho_counts[specific_orthogroups$ortho_id,species_in])
  }
  else{
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(species_out)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    gene_number <- sum(rowSums(ortho_counts[specific_orthogroups$ortho_id,species_in]))
  }
  ortho_number <- nrow(specific_orthogroups)
  output <- c(ortho_number, gene_number)
  output
  }

Present in at least one of X and in at least one of y, lost in all of Z

default species for Z: all species not in X or Y

one_X_one_Y_none_Z <- function(x, y, z){
  ancestral_species <- ortho_binary %>% select(x)
  shared_species <- ortho_binary %>% select(y)
  if (missing(z)){
    shared_orthogroups <- ortho_binary[rowSums(ancestral_species) >= 1 & rowSums(shared_species) >=1,]
    shared_num <- nrow(shared_orthogroups)
    anc_names <- paste(x, collapse = ",")
    shared_names <- paste(colnames(shared_species), collapse = ",")
    output <- paste(c("Present in at least one of: ", anc_names, "\nand in at least one of: ", shared_names, ": ", shared_num), collapse = "")
    cat(output)
  }
  else{
    for (species in z){
      if (species %in% colnames(y)){
        shared_species <- shared_species %>% (-species)
      }
    } 
  lost_species <- ortho_binary %>% select(z)
  lost_orthogroups <- ortho_binary[rowSums(ancestral_species) >= 1 & rowSums(shared_species) >=1 & rowSums(lost_species) == 0,]
  lost_num <- nrow(lost_orthogroups)
  anc_names <- paste(x, collapse = ",")
  shared_names <- paste(colnames(shared_species), collapse = ",")
  lost_names <- paste(z, collapse = ",")
  output <- paste(c("Present in at least one of: ", anc_names, "\nand in at least one of: ", shared_names, "\nand lost in: ", lost_names, ": ", lost_num), collapse = "")
  cat(output)
  }
}

Present in at least one of X, none of Y

one_X_none_Y <- function(x, y){
  select_species <- ortho_binary %>% select(x)
  other_species <- ortho_binary %>% select(y)
  specific_orthogroups <- ortho_binary[rowSums(select_species)  >=1 & rowSums(other_species) == 0,]
  num <- nrow(specific_orthogroups)
  at_least_one_names <- paste(x, collapse = ",")
  none_names <- paste(y, collapse = ",")
  output <- paste(c("Present in at least one of: ", at_least_one_names, "\nand in none of: ", none_names, ": ", num), collapse = "")
  cat(output)
}

Present in at least one of X, and at least one of Y, and lost in at least one of Z

Used to calculate losses since ancestor

one_X_one_Y_lost_one_Z <- function(ancestors, shared, lost){
  ancestral_species <- ortho_binary %>% select(ancestors)
  shared_species <- ortho_binary %>% select(shared)
  lost_number <- length(lost)
  for (species in lost){
    if (species %in% colnames(shared)){
      shared_species <- shared_species %>% (-species)
    }
  }
  lost_species <- ortho_binary %>% select(lost)
  lost_orthogroups <- ortho_binary[rowSums(ancestral_species) >= 1 & rowSums(shared_species) >=1 & rowSums(lost_species) < lost_number,]
  lost_num <- nrow(lost_orthogroups)
  anc_names <- paste(ancestors, collapse = ",")
  shared_names <- paste(colnames(shared_species), collapse = ",")
  lost_names <- paste(lost, collapse = ",")
  output <- paste(c("Present in at least one of: ", anc_names, "\nand in at least one of: ", shared_names, "\nand lost in at least one of: ", lost_names, ": ", lost_num), collapse = "")
  cat(output)
}

Count orthogroups in at least x species in taxon

count_orthogroups <- function(species){
  num_species <- length(species)
  og_counts <- integer(0)
  gene_counts <- integer(0)
  for (i in 1:num_species){
    comp <- species_comp_num(species, number_select_species = i)
    num <- comp[1]
    genes <- comp[2]
    og_counts[i] <- num
    gene_counts[i] <- genes
    print(paste("Number of species: ", i, " ; Number of orthogroups: ", num, " ; Number of genes: ", genes))
  }
  rev_og_count <- rev(og_counts)
  rev_gene_counts <- rev(gene_counts)
  for (i in 1:num_species){
    j <-  num_species - (i - 1)
    og_cumulative_sum <- sum(rev_og_count[1:i])
    gene_cumulative_sum <- sum(rev_gene_counts[1:i])
    print(paste("Present in at least ", j, " species: ", og_cumulative_sum, " orthogroups; ",  gene_cumulative_sum, " genes" ))
  }
}

Counts orthogroups present in a taxon, regardless of other taxa

shared_orthogroups <- function(species_in){
  select_species <- ortho_binary %>% select(species_in)
  other_species <- ortho_binary %>% select(-species_in)
  #number_select_species <- length(species_in)
  specific_orthogroups <- ortho_binary[rowSums(select_species) == length(species_in),]
  ortho_number <- nrow(specific_orthogroups)
  in_species_names <- paste(colnames(select_species), collapse = ",")
  output <- paste("present in: ", in_species_names, "\n", "number of orthogroups: ", ortho_number, "\n", sep = "")
  cat(output)
}

Subset and group species from taxon

select_clade <- function(clade_name){
  clade <- taxonomy %>% filter(clade == clade_name)
  select_species <- clade$species
  select_species
}

fuse_taxa <- function(clade_names){
  select_species <- taxonomy %>% filter(clade %in% clade_names)
  species_names <- select_species$species
  species_names
}

Query orthofinder output

Orthogroups specific to Hydractinia

genus Hydractinia only

hydractinia <- c("hydractinia_echinata", "hydractinia_symbiolongicarpus")
species_comp(hydractinia)

present in: hydractinia_echinata,hydractinia_symbiolongicarpus
absent in: all other species
number of orthogroups: 1564
number of genes: 4819

Hydractinia echinata only

species_comp("hydractinia_echinata")

present in: hydractinia_echinata
absent in: all other species
number of orthogroups: 46
number of genes: 149

Hydractinia symbiolongicarpus only

species_comp("hydractinia_symbiolongicarpus")

present in: hydractinia_symbiolongicarpus
absent in: all other species
number of orthogroups: 15
number of genes: 37

Orthogroups specific to one cnidarian

cnidaria <- fuse_taxa(c("Actinaria", "Hexacorallia", "Octocorallia", "Scyphozoa", "Cubozoa", "Hydrozoa",  "Myxozoa"))
cnidaria

 [1] "exaiptasia_pallida"            "nematostella_vectensis"        "orbicella_faveolata"           "acropora_digitifera"           "pocillopora_damicornis"       
 [6] "renilla_muelleri"              "dendronephthya_gigantea"       "aurelia_aurita_atlantic"       "aurelia_aurita_pacific"        "nemopilema_nomurai"           
[11] "hydractinia_echinata"          "hydractinia_symbiolongicarpus" "hydra_magnipapillata"          "clytia_hemisphaerica"          "morbakka_virulenta"           
[16] "kudoa_iwatai"

for (species in cnidaria){
  species_comp(species)
  cat("\n\n")
}

present in: exaiptasia_pallida
absent in: all other species
number of orthogroups: 21
number of genes: 106

present in: nematostella_vectensis
absent in: all other species
number of orthogroups: 19
number of genes: 69

present in: orbicella_faveolata
absent in: all other species
number of orthogroups: 9
number of genes: 23

present in: acropora_digitifera
absent in: all other species
number of orthogroups: 20
number of genes: 52

present in: pocillopora_damicornis
absent in: all other species
number of orthogroups: 5
number of genes: 12

present in: renilla_muelleri
absent in: all other species
number of orthogroups: 54
number of genes: 181

present in: dendronephthya_gigantea
absent in: all other species
number of orthogroups: 43
number of genes: 153

present in: aurelia_aurita_atlantic
absent in: all other species
number of orthogroups: 32
number of genes: 109

present in: aurelia_aurita_pacific
absent in: all other species
number of orthogroups: 67
number of genes: 164

present in: nemopilema_nomurai
absent in: all other species
number of orthogroups: 28
number of genes: 98

present in: hydractinia_echinata
absent in: all other species
number of orthogroups: 46
number of genes: 149

present in: hydractinia_symbiolongicarpus
absent in: all other species
number of orthogroups: 15
number of genes: 37

present in: hydra_magnipapillata
absent in: all other species
number of orthogroups: 154
number of genes: 864

present in: clytia_hemisphaerica
absent in: all other species
number of orthogroups: 81
number of genes: 460

present in: morbakka_virulenta
absent in: all other species
number of orthogroups: 52
number of genes: 172

present in: kudoa_iwatai
absent in: all other species
number of orthogroups: 8
number of genes: 49

Hydrozoa queries

Orthogroups present in all hydrozoans but no other taxa

hydrozoa <- select_clade("Hydrozoa")
species_comp(hydrozoa)

present in: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica
absent in: all other species
number of orthogroups: 209
number of genes: 1608

Orthogroups present in 3 hydrozoans but no other taxa

for (comb in combn(hydrozoa, 3, simplify = F)){
  species_comp(comb)
  cat("\n\n")
}

present in: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata
absent in: all other species
number of orthogroups: 129
number of genes: 794

present in: hydractinia_echinata,hydractinia_symbiolongicarpus,clytia_hemisphaerica
absent in: all other species
number of orthogroups: 280
number of genes: 1765

present in: hydractinia_echinata,hydra_magnipapillata,clytia_hemisphaerica
absent in: all other species
number of orthogroups: 11
number of genes: 105

present in: hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica
absent in: all other species
number of orthogroups: 12
number of genes: 43

Orthogroups present in 2 hydrozoans but no other taxa

for (comb in combn(hydrozoa, 2, simplify = F)){
  species_comp(comb)
  cat("\n\n")
}

present in: hydractinia_echinata,hydractinia_symbiolongicarpus
absent in: all other species
number of orthogroups: 1564
number of genes: 4819

present in: hydractinia_echinata,hydra_magnipapillata
absent in: all other species
number of orthogroups: 26
number of genes: 114

present in: hydractinia_echinata,clytia_hemisphaerica
absent in: all other species
number of orthogroups: 39
number of genes: 174

present in: hydractinia_symbiolongicarpus,hydra_magnipapillata
absent in: all other species
number of orthogroups: 17
number of genes: 53

present in: hydractinia_symbiolongicarpus,clytia_hemisphaerica
absent in: all other species
number of orthogroups: 35
number of genes: 104

present in: hydra_magnipapillata,clytia_hemisphaerica
absent in: all other species
number of orthogroups: 44
number of genes: 186

Orthogroups present only in Nematostella and Hydra

species_comp(c("nematostella_vectensis", "hydra_magnipapillata"))

present in: nematostella_vectensis,hydra_magnipapillata
absent in: all other species
number of orthogroups: 2
number of genes: 6

Anthozoa queries

anthozoa <- fuse_taxa(c("Octocorallia", "Hexacorallia", "Actinaria"))
anthozoa

[1] "exaiptasia_pallida"      "nematostella_vectensis"  "orbicella_faveolata"     "acropora_digitifera"     "pocillopora_damicornis"  "renilla_muelleri"       
[7] "dendronephthya_gigantea"

Orthogroups shared by all anthozoans

shared_orthogroups(anthozoa)

present in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea
number of orthogroups: 4900

Orthogroups shared by all anthozoans and absent in all other taxa

species_comp(anthozoa)

present in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea
absent in: all other species
number of orthogroups: 38
number of genes: 469

Orthogroups present in at least one anthozoan and absent in all other taxa

count_orthogroups(anthozoa)

[1] "Number of species:  1  ; Number of orthogroups:  171  ; Number of genes:  596"
[1] "Number of species:  2  ; Number of orthogroups:  1066  ; Number of genes:  2938"
[1] "Number of species:  3  ; Number of orthogroups:  556  ; Number of genes:  2485"
[1] "Number of species:  4  ; Number of orthogroups:  310  ; Number of genes:  1892"
[1] "Number of species:  5  ; Number of orthogroups:  238  ; Number of genes:  1829"
[1] "Number of species:  6  ; Number of orthogroups:  79  ; Number of genes:  972"
[1] "Number of species:  7  ; Number of orthogroups:  38  ; Number of genes:  469"
[1] "Present in at least  7  species:  38  orthogroups;  469  genes"
[1] "Present in at least  6  species:  117  orthogroups;  1441  genes"
[1] "Present in at least  5  species:  355  orthogroups;  3270  genes"
[1] "Present in at least  4  species:  665  orthogroups;  5162  genes"
[1] "Present in at least  3  species:  1221  orthogroups;  7647  genes"
[1] "Present in at least  2  species:  2287  orthogroups;  10585  genes"
[1] "Present in at least  1  species:  2458  orthogroups;  11181  genes"

Medusozoa queries

medusozoa <- fuse_taxa(c("Hydrozoa", "Scyphozoa", "Cubozoa"))
medusozoa

[1] "aurelia_aurita_atlantic"       "aurelia_aurita_pacific"        "nemopilema_nomurai"            "hydractinia_echinata"          "hydractinia_symbiolongicarpus"
[6] "hydra_magnipapillata"          "clytia_hemisphaerica"          "morbakka_virulenta"

Orthogroups shared by all medusozoans

shared_orthogroups(medusozoa)

present in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta
number of orthogroups: 4180

Orthogroups shared by all medusozoans and absent in all other taxa

species_comp(medusozoa)

present in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta
absent in: all other species
number of orthogroups: 84
number of genes: 935

Orthogroups present in at least one medusozoan and absent in all other taxa

count_orthogroups(medusozoa)

[1] "Number of species:  1  ; Number of orthogroups:  475  ; Number of genes:  2053"
[1] "Number of species:  2  ; Number of orthogroups:  3025  ; Number of genes:  9175"
[1] "Number of species:  3  ; Number of orthogroups:  1142  ; Number of genes:  5995"
[1] "Number of species:  4  ; Number of orthogroups:  446  ; Number of genes:  3157"
[1] "Number of species:  5  ; Number of orthogroups:  81  ; Number of genes:  774"
[1] "Number of species:  6  ; Number of orthogroups:  59  ; Number of genes:  662"
[1] "Number of species:  7  ; Number of orthogroups:  78  ; Number of genes:  929"
[1] "Number of species:  8  ; Number of orthogroups:  84  ; Number of genes:  935"
[1] "Present in at least  8  species:  84  orthogroups;  935  genes"
[1] "Present in at least  7  species:  162  orthogroups;  1864  genes"
[1] "Present in at least  6  species:  221  orthogroups;  2526  genes"
[1] "Present in at least  5  species:  302  orthogroups;  3300  genes"
[1] "Present in at least  4  species:  748  orthogroups;  6457  genes"
[1] "Present in at least  3  species:  1890  orthogroups;  12452  genes"
[1] "Present in at least  2  species:  4915  orthogroups;  21627  genes"
[1] "Present in at least  1  species:  5390  orthogroups;  23680  genes"

Cnidaria queries

cnidaria <- fuse_taxa(c("Actinaria", "Hexacorallia", "Octocorallia", "Scyphozoa", "Cubozoa", "Hydrozoa",  "Myxozoa"))
cnidaria

 [1] "exaiptasia_pallida"            "nematostella_vectensis"        "orbicella_faveolata"           "acropora_digitifera"           "pocillopora_damicornis"       
 [6] "renilla_muelleri"              "dendronephthya_gigantea"       "aurelia_aurita_atlantic"       "aurelia_aurita_pacific"        "nemopilema_nomurai"           
[11] "hydractinia_echinata"          "hydractinia_symbiolongicarpus" "hydra_magnipapillata"          "clytia_hemisphaerica"          "morbakka_virulenta"           
[16] "kudoa_iwatai"

Orthogroups present in one or more cnidarian and absent in all other species

count_orthogroups(cnidaria)

[1] "Number of species:  1  ; Number of orthogroups:  654  ; Number of genes:  2698"
[1] "Number of species:  2  ; Number of orthogroups:  4255  ; Number of genes:  12756"
[1] "Number of species:  3  ; Number of orthogroups:  1848  ; Number of genes:  9355"
[1] "Number of species:  4  ; Number of orthogroups:  864  ; Number of genes:  5981"
[1] "Number of species:  5  ; Number of orthogroups:  391  ; Number of genes:  3558"
[1] "Number of species:  6  ; Number of orthogroups:  202  ; Number of genes:  2470"
[1] "Number of species:  7  ; Number of orthogroups:  161  ; Number of genes:  2119"
[1] "Number of species:  8  ; Number of orthogroups:  123  ; Number of genes:  1694"
[1] "Number of species:  9  ; Number of orthogroups:  52  ; Number of genes:  894"
[1] "Number of species:  10  ; Number of orthogroups:  35  ; Number of genes:  606"
[1] "Number of species:  11  ; Number of orthogroups:  35  ; Number of genes:  728"
[1] "Number of species:  12  ; Number of orthogroups:  24  ; Number of genes:  648"
[1] "Number of species:  13  ; Number of orthogroups:  31  ; Number of genes:  830"
[1] "Number of species:  14  ; Number of orthogroups:  35  ; Number of genes:  1051"
[1] "Number of species:  15  ; Number of orthogroups:  34  ; Number of genes:  1097"
[1] "Number of species:  16  ; Number of orthogroups:  2  ; Number of genes:  137"
[1] "Present in at least  16  species:  2  orthogroups;  137  genes"
[1] "Present in at least  15  species:  36  orthogroups;  1234  genes"
[1] "Present in at least  14  species:  71  orthogroups;  2285  genes"
[1] "Present in at least  13  species:  102  orthogroups;  3115  genes"
[1] "Present in at least  12  species:  126  orthogroups;  3763  genes"
[1] "Present in at least  11  species:  161  orthogroups;  4491  genes"
[1] "Present in at least  10  species:  196  orthogroups;  5097  genes"
[1] "Present in at least  9  species:  248  orthogroups;  5991  genes"
[1] "Present in at least  8  species:  371  orthogroups;  7685  genes"
[1] "Present in at least  7  species:  532  orthogroups;  9804  genes"
[1] "Present in at least  6  species:  734  orthogroups;  12274  genes"
[1] "Present in at least  5  species:  1125  orthogroups;  15832  genes"
[1] "Present in at least  4  species:  1989  orthogroups;  21813  genes"
[1] "Present in at least  3  species:  3837  orthogroups;  31168  genes"
[1] "Present in at least  2  species:  8092  orthogroups;  43924  genes"
[1] "Present in at least  1  species:  8746  orthogroups;  46622  genes"

Orthogroups present in one non-metazoan and absent in all cnidarians

non_metazoans <- select_clade("Non-metazoans")
non_metazoans

[1] "capsaspora_owczarzaki"    "creolimax_fragrantissima" "monosiga_brevicolis"      "saccharomyces_cerevisiae" "salpingoeca_rosetta"      "sphaeroforma_arctica"

one_X_none_Y(non_metazoans, cnidaria)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in none of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 3310

Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Hydractinia echinata

one_X_one_Y_none_Z(non_metazoans, cnidaria, "hydractinia_echinata")

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydractinia_echinata: 1209

Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Hydractinia symbiolongicarpus

one_X_one_Y_none_Z(non_metazoans, cnidaria, "hydractinia_symbiolongicarpus")

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 1212

Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Hydra

one_X_one_Y_none_Z(non_metazoans, cnidaria, "hydra_magnipapillata")

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydra_magnipapillata: 1386

Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in both Hydractinia

one_X_one_Y_none_Z(non_metazoans, cnidaria, hydractinia)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 1024

Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Clytia

one_X_one_Y_none_Z(non_metazoans, cnidaria, "clytia_hemisphaerica")

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: clytia_hemisphaerica: 1463

Orthogroups present in at least one non-metazoan and Hydra but absent in both Hydractinia

one_X_one_Y_none_Z(non_metazoans, "hydra_magnipapillata", hydractinia)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: hydra_magnipapillata
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 177

Orthogroups present in at least one non-metazoan and at least one Hydractinia but absent in Hydra

one_X_one_Y_none_Z(non_metazoans, hydractinia, "hydra_magnipapillata")

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: hydractinia_echinata,hydractinia_symbiolongicarpus
and lost in: hydra_magnipapillata: 539

Orthogroups present in at least one non-metazoan but absent in all cnidarians

one_X_none_Y(non_metazoans, cnidaria)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in none of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 3310

Orthogroups present in at least one non-metazoan and one bilaterian but absent in all cnidarians

non_bilaterians <- c(cnidaria, "Porifera", "Ctenophora", "Placozoa", "Non-metazoans")
non_bilaterians

 [1] "exaiptasia_pallida"            "nematostella_vectensis"        "orbicella_faveolata"           "acropora_digitifera"          
 [5] "pocillopora_damicornis"        "renilla_muelleri"              "dendronephthya_gigantea"       "aurelia_aurita_atlantic"      
 [9] "aurelia_aurita_pacific"        "nemopilema_nomurai"            "hydractinia_echinata"          "hydractinia_symbiolongicarpus"
[13] "hydra_magnipapillata"          "clytia_hemisphaerica"          "morbakka_virulenta"            "kudoa_iwatai"                 
[17] "Porifera"                      "Ctenophora"                    "Placozoa"                      "Non-metazoans"

bilateria <- taxonomy %>% filter(!clade %in% non_bilaterians)
bilateria <- bilateria$species
bilateria

 [1] "danio_rerio"                   "xenopus_tropicalis"            "gallus_gallus"                 "homo_sapiens"                 
 [5] "ciona_intestinalis"            "branchiostoma_floridae"        "saccoglossus_kowalevskii"      "acanthaster_planci"           
 [9] "pristionchus_pacificus"        "caenorhabditis_elegans"        "drosophila_melanogaster"       "tribolium_castaneum"          
[13] "daphnia_pulex"                 "ixodes_scapularis"             "lottia_gigantea"               "octopus_bimaculoides"         
[17] "phoronis_australis"            "notospermus_geniculatus"       "schistosoma_mansoni"           "schmidtea_mediterranea"       
[21] "capitella_teleta"              "helobdella_robusta"            "exaiptasia_pallida"            "nematostella_vectensis"       
[25] "orbicella_faveolata"           "acropora_digitifera"           "pocillopora_damicornis"        "renilla_muelleri"             
[29] "dendronephthya_gigantea"       "aurelia_aurita_atlantic"       "aurelia_aurita_pacific"        "nemopilema_nomurai"           
[33] "hydractinia_echinata"          "hydractinia_symbiolongicarpus" "hydra_magnipapillata"          "clytia_hemisphaerica"         
[37] "morbakka_virulenta"            "hofstenia_miamia"              "kudoa_iwatai"

one_X_one_Y_none_Z(non_metazoans, bilateria, cnidaria)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 447

Output these orthogroups

x <- ortho_binary %>% select(non_metazoans)
y <- ortho_binary %>% select(bilateria)
z <- ortho_binary %>% select(cnidaria)
lost_orthogroups <- ortho_binary[rowSums(x) >= 1 & rowSums(y) >=1 & rowSums(z) == 0,]
lost_orthogroups

Orthogroups present in non-metazoans and at least one bilaterian but absent in at least one Hydractinia

one_X_one_Y_lost_one_Z(non_metazoans, bilateria, hydractinia)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in at least one of: hydractinia_echinata,hydractinia_symbiolongicarpus: 1844

Orthogroups present in non-metazoans and at least one bilaterian but absent in both Hydractinia

one_X_one_Y_none_Z(non_metazoans, bilateria, hydractinia)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 1471

Orthogroups present in at least one non-metazoan and one bilaterian but absent in one hydrozoan

for (species in hydrozoa){
  one_X_one_Y_none_Z(non_metazoans, bilateria, species)
  cat("\n\n")
}

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata: 1656

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 1659

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydra_magnipapillata: 1833

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: clytia_hemisphaerica: 1910

Orthogroups present in at least one non-metazoan and one bilaterian but absent in all hydrozoans

one_X_one_Y_none_Z(non_metazoans, bilateria, hydrozoa)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica: 1204

Orthogroups present in at least one non-metazoan and one bilaterian but absent in all medusozoans

medusozoa <- fuse_taxa(c("Hydrozoa", "Scyphozoa", "Cubozoa"))
medusozoa

[1] "aurelia_aurita_atlantic"       "aurelia_aurita_pacific"        "nemopilema_nomurai"            "hydractinia_echinata"         
[5] "hydractinia_symbiolongicarpus" "hydra_magnipapillata"          "clytia_hemisphaerica"          "morbakka_virulenta"

one_X_one_Y_none_Z(non_metazoans, bilateria, medusozoa)

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta: 869

Orthogroups present in at least one non-metazoan and one bilaterian but absent in Nematostella

one_X_one_Y_none_Z(non_metazoans, bilateria, "nematostella_vectensis")

Present in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: nematostella_vectensis: 1330

Orthologs present in at last one bilaterian and one non-metazoan

one_X_one_Y_none_Z(bilateria, non_metazoans)

Present in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and in at least one of: capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica: 6787

Orthologs present in at last one bilaterian and one Hydractinia

one_X_one_Y_none_Z(bilateria, hydractinia)

Present in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and in at least one of: hydractinia_echinata,hydractinia_symbiolongicarpus: 10385

Orthologs present in at least one bilaterian and Mnemiopsis or Amphimedon

cteno_sponge <-c("mnemiopsis_leidyi", "amphimedon_queenslandica")
one_X_one_Y_none_Z(bilateria, cteno_sponge)

Present in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and in at least one of: mnemiopsis_leidyi,amphimedon_queenslandica: 7685

Orthologs present in Hydractinia and human

one_X_one_Y_none_Z(hydractinia, "homo_sapiens")

Present in at least one of: hydractinia_echinata,hydractinia_symbiolongicarpus
and in at least one of: homo_sapiens: 5703

Ctenophora queries

Orthogroups present in ctenophores and bilaterians but absent in cnidarians

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, cnidaria)

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 176

Orthogroups present in ctenophores and bilaterians but not in medusozoans

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, medusozoa)

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta: 345

Orthogroups present in ctenophores and at least one bilaterian but absent in hydrozoans

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, hydrozoa)

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica: 515

Orthogroups present in ctenophores and bilaterians but absent in Hydractinia

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, hydractinia)

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 746

Orthogroups present in ctenophores and bilaterians but absent in Hydractinia echinata

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "hydractinia_echinata")

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata: 897

Orthogroups present in ctenophores and bilaterians but absent in Hydractinia symbiolongicarpus

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "hydractinia_symbiolongicarpus")

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 878

Orthogroups present in ctenophores and bilaterians but absent in Clytia

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "clytia_hemisphaerica")

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: clytia_hemisphaerica: 990

Orthogroups present in ctenophores and bilaterians but absent in Hydra

one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "hydra_magnipapillata")

Present in at least one of: mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydra_magnipapillata: 991

Porifera queries

Orthogroups present in Amphimedon and at least one bilaterian but absent in cnidarians

one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, cnidaria)

Present in at least one of: amphimedon_queenslandica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 376

Orthogroups present in Amphimedon and at least one bilaterian but absent in medusozoans

one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, medusozoa)

Present in at least one of: amphimedon_queenslandica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta: 672

Orthogroups present in Amphimedon and at least one bilaterian but absent in both Hydractinia

one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, hydractinia)

Present in at least one of: amphimedon_queenslandica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 1334

Orthogroups present in Amphimedon and at least one bilaterian but absent in one hydrozoan

for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "clytia_hemisphaerica", "hydra_magnipapillata")){
  one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, taxon)
  cat("\n\n")
}

Present in at least one of: amphimedon_queenslandica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata: 1526

Present in at least one of: amphimedon_queenslandica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 1529

Present in at least one of: amphimedon_queenslandica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: clytia_hemisphaerica: 1731

Present in at least one of: amphimedon_queenslandica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydra_magnipapillata: 1662

Placozoa queries

placozoa <- select_clade("Placozoa")
placozoa

[1] "hoilungia_hongkongensis" "trichoplax_adhaerens"

Orthogroups present in at least one placozoan and one bilaterian but absent in all cnidarians

one_X_one_Y_none_Z(placozoa, bilateria, cnidaria)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 171

Orthogroups present in at least one placozoan and one bilaterian but absent in all medusozoans

one_X_one_Y_none_Z(placozoa, bilateria, medusozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta: 436

Orthogroups present in at least one placozoan and one bilaterian but absent in all medusozoans

one_X_one_Y_none_Z(placozoa, bilateria, hydrozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica: 694

Orthogroups present in at least one placozoan and one bilaterian but absent in both Hydractinia

one_X_one_Y_none_Z(placozoa, bilateria, hydractinia)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 903

Orthogroups present in at least one placozoan and one bilaterian but absent in one hydrozoan

for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "clytia_hemisphaerica", "hydra_magnipapillata")){
  one_X_one_Y_none_Z(placozoa, bilateria, taxon)
  cat("\n\n")
}

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata: 1091

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 1090

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: clytia_hemisphaerica: 1341

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydra_magnipapillata: 1269

Potential losses since split with Ctenoophora + sponge + Placozoa (CSP)

csp <- fuse_taxa(c("Ctenophora", "Porifera", "Placozoa"))
csp

[1] "hoilungia_hongkongensis"  "trichoplax_adhaerens"     "amphimedon_queenslandica" "mnemiopsis_leidyi"

Orthogroups present in at least one of CSP and one bilaterian but absent in all cnidarians

one_X_one_Y_none_Z(csp, bilateria, cnidaria)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 639

Orthogroups present in at least one of CSP and one bilaterian but absent in all medusozoans

one_X_one_Y_none_Z(csp, bilateria, medusozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta: 1214

Orthogroups present in at least one of CSP and one bilaterian but absent in all hydrozoans

one_X_one_Y_none_Z(csp, bilateria, hydrozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica: 1749

Orthogroups present in at least one of CSP and one bilaterian but absent in both hydractinia

one_X_one_Y_none_Z(csp, bilateria, hydractinia)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 2269

Orthogroups present in at least one of CSP and one bilaterian but absent in one hydrozoan

for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "clytia_hemisphaerica", "hydra_magnipapillata")){
  one_X_one_Y_none_Z(csp, bilateria, taxon)
  cat("\n\n")
}

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata: 2516

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 2534

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: clytia_hemisphaerica: 2721

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydra_magnipapillata: 2733

Orthogroups present in at least one of CSP but absent in all cnidarians

one_X_none_Y(csp, cnidaria)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 2103

Orthogroups present in at least one of CSP but absent in all medusozoans

one_X_none_Y(csp, medusozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta: 2678

Orthogroups present in at least one of CSP but absent in all hydrozoans

one_X_none_Y(csp, hydrozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica: 3213

Orthogroups present in at least one of CSP but absent in both Hydractinia

one_X_none_Y(csp, hydractinia)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: hydractinia_echinata,hydractinia_symbiolongicarpus: 3733

Orthogroups present in at least one of CSP but absent in one hydrozoan

for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "hydra_magnipapillata", "clytia_hemisphaerica")){
  one_X_none_Y(csp, taxon)
  cat("\n\n")
}

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: hydractinia_echinata: 3980

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: hydractinia_symbiolongicarpus: 3998

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: hydra_magnipapillata: 4197

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi
and in none of: clytia_hemisphaerica: 4185

Potential losses since split between (non-metazoans + Ctenophora + Porifera + Placozoa) and (Cnidaria+Bilateria)

ancestor <- fuse_taxa(c("Non-metazoans","Ctenophora", "Porifera", "Placozoa"))
ancestor

 [1] "hoilungia_hongkongensis"  "trichoplax_adhaerens"     "amphimedon_queenslandica" "mnemiopsis_leidyi"        "capsaspora_owczarzaki"   
 [6] "creolimax_fragrantissima" "monosiga_brevicolis"      "saccharomyces_cerevisiae" "salpingoeca_rosetta"      "sphaeroforma_arctica"

Orthogroups present in at least one early-branching taxon and absent in all cnidarians

one_X_none_Y(ancestor, cnidaria)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in none of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 5135

Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in H. echinata

one_X_one_Y_none_Z(ancestor, cnidaria, "hydractinia_echinata")

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydractinia_echinata: 2325

Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in H. symbioongicarpus

one_X_one_Y_none_Z(ancestor, cnidaria, "hydractinia_symbiolongicarpus")

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 2362

Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in Hydra

one_X_one_Y_none_Z(ancestor, cnidaria, "hydra_magnipapillata")

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydra_magnipapillata: 2579

Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in both Hydractinia

one_X_one_Y_none_Z(ancestor, cnidaria, hydractinia)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 2067

Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in Clytia

one_X_one_Y_none_Z(ancestor, cnidaria, "clytia_hemisphaerica")

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai
and lost in: clytia_hemisphaerica: 2552

Orthogroups present in at least one early-branching taxon and Hydra but absent in both Hydractinia

one_X_one_Y_none_Z(ancestor, "hydra_magnipapillata", hydractinia)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: hydra_magnipapillata
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus: 384

Orthogroups present in at least one early-branching taxon and one Hydractinia but absent in Hydra

one_X_one_Y_none_Z(ancestor, hydractinia, "hydra_magnipapillata")

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: hydractinia_echinata,hydractinia_symbiolongicarpus
and lost in: hydra_magnipapillata: 896

Orthogroups present in at least one early-branching taxon and one bilaterian but absent in all cnidarians

one_X_one_Y_none_Z(ancestor, bilateria, cnidaria)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,kudoa_iwatai: 923

Orthogroups present in at least one early-branching taxon and one bilaterian but absent in both Hydractinia

one_X_one_Y_lost_one_Z(ancestor, bilateria, hydractinia)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in at least one of: hydractinia_echinata,hydractinia_symbiolongicarpus: 3543

Orthogroups present in at least one early-branching taxon and one bilaterian but absent in one hydrozoan

for (species in hydrozoa){
  one_X_one_Y_none_Z(ancestor, bilateria, species)
  cat("\n\n")
}

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata: 3248

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_symbiolongicarpus: 3285

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydra_magnipapillata: 3502

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: clytia_hemisphaerica: 3475

Orthogroups present in at least one early-branching taxon and one bilaterian but absent in all hydrozoans

one_X_one_Y_none_Z(ancestor, bilateria, hydrozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica: 2398

Orthogroups present in at least one early-branching taxon and one bilaterian but absent in all medusozoans

one_X_one_Y_none_Z(ancestor, bilateria, medusozoa)

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta: 1727

Orthogroups present in at least one early-branching taxon and one bilaterian but absent in Nematostella

one_X_one_Y_none_Z(ancestor, bilateria, "nematostella_vectensis")

Present in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica
and in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and lost in: nematostella_vectensis: 2781

Orthogroups present in at least one early-branching taxon and one bilaterian

one_X_one_Y_none_Z(bilateria, ancestor)

Present in at least one of: danio_rerio,xenopus_tropicalis,gallus_gallus,homo_sapiens,ciona_intestinalis,branchiostoma_floridae,saccoglossus_kowalevskii,acanthaster_planci,pristionchus_pacificus,caenorhabditis_elegans,drosophila_melanogaster,tribolium_castaneum,daphnia_pulex,ixodes_scapularis,lottia_gigantea,octopus_bimaculoides,phoronis_australis,notospermus_geniculatus,schistosoma_mansoni,schmidtea_mediterranea,capitella_teleta,helobdella_robusta,exaiptasia_pallida,nematostella_vectensis,orbicella_faveolata,acropora_digitifera,pocillopora_damicornis,renilla_muelleri,dendronephthya_gigantea,aurelia_aurita_atlantic,aurelia_aurita_pacific,nemopilema_nomurai,hydractinia_echinata,hydractinia_symbiolongicarpus,hydra_magnipapillata,clytia_hemisphaerica,morbakka_virulenta,hofstenia_miamia,kudoa_iwatai
and in at least one of: hoilungia_hongkongensis,trichoplax_adhaerens,amphimedon_queenslandica,mnemiopsis_leidyi,capsaspora_owczarzaki,creolimax_fragrantissima,monosiga_brevicolis,saccharomyces_cerevisiae,salpingoeca_rosetta,sphaeroforma_arctica: 9459

Gene counts in cnidarian-specific orthogroups

count_orthogroups(cnidaria)

[1] "Number of species:  1  ; Number of orthogroups:  654  ; Number of genes:  2698"
[1] "Number of species:  2  ; Number of orthogroups:  4255  ; Number of genes:  12756"
[1] "Number of species:  3  ; Number of orthogroups:  1848  ; Number of genes:  9355"
[1] "Number of species:  4  ; Number of orthogroups:  864  ; Number of genes:  5981"
[1] "Number of species:  5  ; Number of orthogroups:  391  ; Number of genes:  3558"
[1] "Number of species:  6  ; Number of orthogroups:  202  ; Number of genes:  2470"
[1] "Number of species:  7  ; Number of orthogroups:  161  ; Number of genes:  2119"
[1] "Number of species:  8  ; Number of orthogroups:  123  ; Number of genes:  1694"
[1] "Number of species:  9  ; Number of orthogroups:  52  ; Number of genes:  894"
[1] "Number of species:  10  ; Number of orthogroups:  35  ; Number of genes:  606"
[1] "Number of species:  11  ; Number of orthogroups:  35  ; Number of genes:  728"
[1] "Number of species:  12  ; Number of orthogroups:  24  ; Number of genes:  648"
[1] "Number of species:  13  ; Number of orthogroups:  31  ; Number of genes:  830"
[1] "Number of species:  14  ; Number of orthogroups:  35  ; Number of genes:  1051"
[1] "Number of species:  15  ; Number of orthogroups:  34  ; Number of genes:  1097"
[1] "Number of species:  16  ; Number of orthogroups:  2  ; Number of genes:  137"
[1] "Present in at least  16  species:  2  orthogroups;  137  genes"
[1] "Present in at least  15  species:  36  orthogroups;  1234  genes"
[1] "Present in at least  14  species:  71  orthogroups;  2285  genes"
[1] "Present in at least  13  species:  102  orthogroups;  3115  genes"
[1] "Present in at least  12  species:  126  orthogroups;  3763  genes"
[1] "Present in at least  11  species:  161  orthogroups;  4491  genes"
[1] "Present in at least  10  species:  196  orthogroups;  5097  genes"
[1] "Present in at least  9  species:  248  orthogroups;  5991  genes"
[1] "Present in at least  8  species:  371  orthogroups;  7685  genes"
[1] "Present in at least  7  species:  532  orthogroups;  9804  genes"
[1] "Present in at least  6  species:  734  orthogroups;  12274  genes"
[1] "Present in at least  5  species:  1125  orthogroups;  15832  genes"
[1] "Present in at least  4  species:  1989  orthogroups;  21813  genes"
[1] "Present in at least  3  species:  3837  orthogroups;  31168  genes"
[1] "Present in at least  2  species:  8092  orthogroups;  43924  genes"
[1] "Present in at least  1  species:  8746  orthogroups;  46622  genes"

---
title: "Orthogroup analysis"
output: html_notebook
---


```{r}
library(tidyverse)
library(viridis)
```

***

### Read orthogroup table

```{r}
ortho_counts <- read.table("Orthogroups.GeneCount_dec_20.csv")
ortho_counts
ortho_binary <- ortho_counts[,1:49] #Remove the Totals column
ortho_binary[ortho_binary >= 1] <- 1 #Convert to presence/absence
ortho_binary_names <- ortho_binary %>% mutate(ortho_id = row.names(ortho_counts), gene_counts = rowSums(ortho_counts))
```

***

### Read taxonomy table

```{r}
taxonomy <- read_csv("taxonomy_run3.csv")
taxonomy
```

***

### Functions

***

#### Present in at least one of X, absent in all of Y
##### default species for Y: all species not in X
##### species_comp outputs text: number of orthogroups and total number of genes in orthogroups
##### species_comp_num outputs integers

```{r}
# species_names is a vector of species names
species_comp <- function(species_in, species_out, number_select_species = length(species_in)){
  if (missing(species_out)){
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(-species_in)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    gene_number <- sum(ortho_counts[specific_orthogroups$ortho_id,species_in])
    out_species_names <- "all other species"
  }
  else{
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(species_out)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    out_species_names <- paste(colnames(other_species), collapse = ",")
    gene_number <- sum(rowSums(ortho_counts[specific_orthogroups$ortho_id,species_in]))

  }
  ortho_number <- nrow(specific_orthogroups)
  in_species_names <- paste(colnames(select_species), collapse = ",")
  output <- paste("present in: ", in_species_names, "\n", "absent in: ", out_species_names, "\n", "number of orthogroups: ", ortho_number, "\n", "number of genes: ",gene_number,  sep = "")
  cat(output)
  }
```

***

```{r}
species_comp_num <- function(species_in, species_out, number_select_species = length(species_in)){
  if (missing(species_out)){
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(-species_in)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    gene_number <- sum(ortho_counts[specific_orthogroups$ortho_id,species_in])
  }
  else{
    select_species <- ortho_binary %>% select(species_in)
    other_species <- ortho_binary %>% select(species_out)
    specific_orthogroups <- ortho_binary_names[rowSums(select_species) == number_select_species & rowSums(other_species) == 0,] %>% select(ortho_id)
    gene_number <- sum(rowSums(ortho_counts[specific_orthogroups$ortho_id,species_in]))

  }
  ortho_number <- nrow(specific_orthogroups)
  output <- c(ortho_number, gene_number)
  output
  }
```
***
#### Present in at least one of X and in at least one of y, lost in all of Z 
##### default species for Z: all species not in X or Y

```{r}
one_X_one_Y_none_Z <- function(x, y, z){
  ancestral_species <- ortho_binary %>% select(x)
  shared_species <- ortho_binary %>% select(y)
  if (missing(z)){
    shared_orthogroups <- ortho_binary[rowSums(ancestral_species) >= 1 & rowSums(shared_species) >=1,]
    shared_num <- nrow(shared_orthogroups)
    anc_names <- paste(x, collapse = ",")
    shared_names <- paste(colnames(shared_species), collapse = ",")
    output <- paste(c("Present in at least one of: ", anc_names, "\nand in at least one of: ", shared_names, ": ", shared_num), collapse = "")
    cat(output)
  }
  else{
    for (species in z){
      if (species %in% colnames(y)){
        shared_species <- shared_species %>% (-species)
      }
    } 
  lost_species <- ortho_binary %>% select(z)
  lost_orthogroups <- ortho_binary[rowSums(ancestral_species) >= 1 & rowSums(shared_species) >=1 & rowSums(lost_species) == 0,]
  lost_num <- nrow(lost_orthogroups)
  anc_names <- paste(x, collapse = ",")
  shared_names <- paste(colnames(shared_species), collapse = ",")
  lost_names <- paste(z, collapse = ",")
  output <- paste(c("Present in at least one of: ", anc_names, "\nand in at least one of: ", shared_names, "\nand lost in: ", lost_names, ": ", lost_num), collapse = "")
  cat(output)
  }
}
```

***
#### Present in at least one of X, none of Y

```{r}
one_X_none_Y <- function(x, y){
  select_species <- ortho_binary %>% select(x)
  other_species <- ortho_binary %>% select(y)
  specific_orthogroups <- ortho_binary[rowSums(select_species)  >=1 & rowSums(other_species) == 0,]
  num <- nrow(specific_orthogroups)
  at_least_one_names <- paste(x, collapse = ",")
  none_names <- paste(y, collapse = ",")
  output <- paste(c("Present in at least one of: ", at_least_one_names, "\nand in none of: ", none_names, ": ", num), collapse = "")
  cat(output)
}
```

***

#### Present in at least one of X, and at least one of Y, and lost in at least one of Z
##### Used to calculate losses since ancestor

```{r}
one_X_one_Y_lost_one_Z <- function(ancestors, shared, lost){
  ancestral_species <- ortho_binary %>% select(ancestors)
  shared_species <- ortho_binary %>% select(shared)
  lost_number <- length(lost)
  for (species in lost){
    if (species %in% colnames(shared)){
      shared_species <- shared_species %>% (-species)
    }
  }
  lost_species <- ortho_binary %>% select(lost)
  lost_orthogroups <- ortho_binary[rowSums(ancestral_species) >= 1 & rowSums(shared_species) >=1 & rowSums(lost_species) < lost_number,]
  lost_num <- nrow(lost_orthogroups)
  anc_names <- paste(ancestors, collapse = ",")
  shared_names <- paste(colnames(shared_species), collapse = ",")
  lost_names <- paste(lost, collapse = ",")
  output <- paste(c("Present in at least one of: ", anc_names, "\nand in at least one of: ", shared_names, "\nand lost in at least one of: ", lost_names, ": ", lost_num), collapse = "")
  cat(output)
}
```

***

#### Count orthogroups in at least x species in taxon

```{r}
count_orthogroups <- function(species){
  num_species <- length(species)
  og_counts <- integer(0)
  gene_counts <- integer(0)
  for (i in 1:num_species){
    comp <- species_comp_num(species, number_select_species = i)
    num <- comp[1]
    genes <- comp[2]
    og_counts[i] <- num
    gene_counts[i] <- genes
    print(paste("Number of species: ", i, " ; Number of orthogroups: ", num, " ; Number of genes: ", genes))
  }
  rev_og_count <- rev(og_counts)
  rev_gene_counts <- rev(gene_counts)
  for (i in 1:num_species){
    j <-  num_species - (i - 1)
    og_cumulative_sum <- sum(rev_og_count[1:i])
    gene_cumulative_sum <- sum(rev_gene_counts[1:i])
    print(paste("Present in at least ", j, " species: ", og_cumulative_sum, " orthogroups; ",  gene_cumulative_sum, " genes" ))
  }
}
```

***

#### Counts orthogroups present in a taxon, regardless of other taxa

```{r}
shared_orthogroups <- function(species_in){
  select_species <- ortho_binary %>% select(species_in)
  other_species <- ortho_binary %>% select(-species_in)
  #number_select_species <- length(species_in)
  specific_orthogroups <- ortho_binary[rowSums(select_species) == length(species_in),]
  ortho_number <- nrow(specific_orthogroups)
  in_species_names <- paste(colnames(select_species), collapse = ",")
  output <- paste("present in: ", in_species_names, "\n", "number of orthogroups: ", ortho_number, "\n", sep = "")
  cat(output)
}
```

***

#### Subset and group species from taxon

```{r}
select_clade <- function(clade_name){
  clade <- taxonomy %>% filter(clade == clade_name)
  select_species <- clade$species
  select_species
}
```

```{r}
fuse_taxa <- function(clade_names){
  select_species <- taxonomy %>% filter(clade %in% clade_names)
  species_names <- select_species$species
  species_names
}
```
***
***

### Query orthofinder output

***
#### Orthogroups specific to Hydractinia

##### genus Hydractinia only

```{r}
hydractinia <- c("hydractinia_echinata", "hydractinia_symbiolongicarpus")
species_comp(hydractinia)
```

***

##### Hydractinia echinata only

```{r}
species_comp("hydractinia_echinata")
```

***

##### Hydractinia symbiolongicarpus only

```{r}
species_comp("hydractinia_symbiolongicarpus")
```
***

##### Orthogroups specific to one cnidarian

```{r}
cnidaria <- fuse_taxa(c("Actinaria", "Hexacorallia", "Octocorallia", "Scyphozoa", "Cubozoa", "Hydrozoa",  "Myxozoa"))
cnidaria
```


```{r}
for (species in cnidaria){
  species_comp(species)
  cat("\n\n")
}
```
***
#### Hydrozoa queries
***
##### Orthogroups present in all hydrozoans but no other taxa 

```{r}
hydrozoa <- select_clade("Hydrozoa")
species_comp(hydrozoa)
```
***

##### Orthogroups present in 3 hydrozoans but no other taxa 


```{r}
for (comb in combn(hydrozoa, 3, simplify = F)){
  species_comp(comb)
  cat("\n\n")
}
```

***

##### Orthogroups present in 2 hydrozoans but no other taxa 

```{r}
for (comb in combn(hydrozoa, 2, simplify = F)){
  species_comp(comb)
  cat("\n\n")
}
```
***

##### Orthogroups present only in Nematostella and Hydra

```{r}
species_comp(c("nematostella_vectensis", "hydra_magnipapillata"))
```

***
***

#### Anthozoa queries

```{r}
anthozoa <- fuse_taxa(c("Octocorallia", "Hexacorallia", "Actinaria"))
anthozoa
```
***
##### Orthogroups shared by all anthozoans

```{r}
shared_orthogroups(anthozoa)
```
***

##### Orthogroups shared by all anthozoans and absent in all other taxa

```{r}
species_comp(anthozoa)
```
***
##### Orthogroups present in at least one anthozoan and absent in all other taxa

```{r}
count_orthogroups(anthozoa)
```
***
***
#### Medusozoa queries
***
```{r}
medusozoa <- fuse_taxa(c("Hydrozoa", "Scyphozoa", "Cubozoa"))
medusozoa
```
***
##### Orthogroups shared by all medusozoans

```{r}
shared_orthogroups(medusozoa)
```
***
##### Orthogroups shared by all medusozoans and absent in all other taxa

```{r}
species_comp(medusozoa)
```
***
##### Orthogroups present in at least one medusozoan and absent in all other taxa

```{r}
count_orthogroups(medusozoa)
```

***
***
#### Cnidaria queries

```{r}
cnidaria <- fuse_taxa(c("Actinaria", "Hexacorallia", "Octocorallia", "Scyphozoa", "Cubozoa", "Hydrozoa",  "Myxozoa"))
cnidaria
```

***
##### Orthogroups present in one or more cnidarian and absent in all other species


```{r}
count_orthogroups(cnidaria)
```

***
***

##### Orthogroups present in one non-metazoan and absent in all cnidarians


```{r}
non_metazoans <- select_clade("Non-metazoans")
non_metazoans
```


```{r}
one_X_none_Y(non_metazoans, cnidaria)
```

***

##### Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Hydractinia echinata

```{r}
one_X_one_Y_none_Z(non_metazoans, cnidaria, "hydractinia_echinata")
```
***
##### Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Hydractinia symbiolongicarpus

```{r}
one_X_one_Y_none_Z(non_metazoans, cnidaria, "hydractinia_symbiolongicarpus")
```
***
##### Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Hydra

```{r}
one_X_one_Y_none_Z(non_metazoans, cnidaria, "hydra_magnipapillata")
```
***
##### Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in both Hydractinia


```{r}
one_X_one_Y_none_Z(non_metazoans, cnidaria, hydractinia)
```
***
##### Orthogroups present in at least one non-metazoan and at least one cnidarian but absent in Clytia

```{r}
one_X_one_Y_none_Z(non_metazoans, cnidaria, "clytia_hemisphaerica")
```
***

##### Orthogroups present in at least one non-metazoan and Hydra but absent in both Hydractinia

```{r}
one_X_one_Y_none_Z(non_metazoans, "hydra_magnipapillata", hydractinia)
```
***
##### Orthogroups present in at least one non-metazoan and at least one Hydractinia but absent in Hydra

```{r}
one_X_one_Y_none_Z(non_metazoans, hydractinia, "hydra_magnipapillata")
```
***
##### Orthogroups present in at least one non-metazoan but absent in all cnidarians


```{r}
one_X_none_Y(non_metazoans, cnidaria)
```
***
##### Orthogroups present in at least one non-metazoan and one bilaterian but absent in all cnidarians	

```{r}
non_bilaterians <- c(cnidaria, "Porifera", "Ctenophora", "Placozoa", "Non-metazoans")
non_bilaterians
```

```{r}
bilateria <- taxonomy %>% filter(!clade %in% non_bilaterians)
bilateria <- bilateria$species
bilateria
```


```{r}
one_X_one_Y_none_Z(non_metazoans, bilateria, cnidaria)
```
***

##### Output these orthogroups

```{r}
x <- ortho_binary %>% select(non_metazoans)
y <- ortho_binary %>% select(bilateria)
z <- ortho_binary %>% select(cnidaria)
lost_orthogroups <- ortho_binary[rowSums(x) >= 1 & rowSums(y) >=1 & rowSums(z) == 0,]
lost_orthogroups
```
***

##### Orthogroups present in non-metazoans and at least one bilaterian but absent in at least one Hydractinia


```{r}
one_X_one_Y_lost_one_Z(non_metazoans, bilateria, hydractinia)
```

***
##### Orthogroups present in non-metazoans and at least one bilaterian but absent in both Hydractinia

```{r}
one_X_one_Y_none_Z(non_metazoans, bilateria, hydractinia)
```
***
##### Orthogroups present in at least one non-metazoan and one bilaterian but absent in one hydrozoan	

```{r}
for (species in hydrozoa){
  one_X_one_Y_none_Z(non_metazoans, bilateria, species)
  cat("\n\n")
} 
```

***
##### Orthogroups present in at least one non-metazoan and one bilaterian but absent in all hydrozoans

```{r}
one_X_one_Y_none_Z(non_metazoans, bilateria, hydrozoa)
```

***

##### Orthogroups present in at least one non-metazoan and one bilaterian but absent in all medusozoans

```{r}
medusozoa <- fuse_taxa(c("Hydrozoa", "Scyphozoa", "Cubozoa"))
medusozoa
```

```{r}
one_X_one_Y_none_Z(non_metazoans, bilateria, medusozoa)
```

***

##### Orthogroups present in at least one non-metazoan and one bilaterian but absent in Nematostella

```{r}
one_X_one_Y_none_Z(non_metazoans, bilateria, "nematostella_vectensis")
```

***
##### Orthologs present in at last one bilaterian and one non-metazoan

```{r}
one_X_one_Y_none_Z(bilateria, non_metazoans)
```

***
##### Orthologs present in at last one bilaterian and one Hydractinia


```{r}
one_X_one_Y_none_Z(bilateria, hydractinia)
```
***
##### Orthologs present in at least one bilaterian and Mnemiopsis or Amphimedon

```{r}
cteno_sponge <-c("mnemiopsis_leidyi", "amphimedon_queenslandica")
one_X_one_Y_none_Z(bilateria, cteno_sponge)
```
***
##### Orthologs present in Hydractinia and human

```{r}
one_X_one_Y_none_Z(hydractinia, "homo_sapiens")
```
***
#### Ctenophora queries
***
##### Orthogroups present in ctenophores and bilaterians but absent in cnidarians

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, cnidaria)
```
***
##### Orthogroups present in ctenophores and bilaterians but not in medusozoans

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, medusozoa)
```

***

##### Orthogroups present in ctenophores and at least one bilaterian but absent in hydrozoans

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, hydrozoa)
```
***
##### Orthogroups present in ctenophores and bilaterians but absent in Hydractinia

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, hydractinia)
```
***
##### Orthogroups present in ctenophores and bilaterians but absent in Hydractinia echinata

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "hydractinia_echinata")
```

***

##### Orthogroups present in ctenophores and bilaterians but absent in Hydractinia symbiolongicarpus

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "hydractinia_symbiolongicarpus")
```

##### Orthogroups present in ctenophores and bilaterians but absent in Clytia 

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "clytia_hemisphaerica")
```

***

##### Orthogroups present in ctenophores and bilaterians but absent in Hydra

```{r}
one_X_one_Y_none_Z("mnemiopsis_leidyi", bilateria, "hydra_magnipapillata")
```
***
#### Porifera queries
***
##### Orthogroups present in Amphimedon and at least one bilaterian but absent in cnidarians

```{r}
one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, cnidaria)
```

***

##### Orthogroups present in Amphimedon and at least one bilaterian but absent in medusozoans

```{r}
one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, medusozoa)
```
***
##### Orthogroups present in Amphimedon and at least one bilaterian but absent in both Hydractinia

```{r}
one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, hydractinia)
```
***

#####  Orthogroups present in Amphimedon and at least one bilaterian but absent in one hydrozoan

```{r}
for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "clytia_hemisphaerica", "hydra_magnipapillata")){
  one_X_one_Y_none_Z("amphimedon_queenslandica", bilateria, taxon)
  cat("\n\n")
}
```
***
#### Placozoa queries

```{r}
placozoa <- select_clade("Placozoa")
placozoa
```

***

#####  Orthogroups present in at least one placozoan and one bilaterian but absent in all cnidarians

```{r}
one_X_one_Y_none_Z(placozoa, bilateria, cnidaria)
```

***

##### Orthogroups present in at least one placozoan and one bilaterian but absent in all medusozoans

```{r}
one_X_one_Y_none_Z(placozoa, bilateria, medusozoa)
```
***

##### Orthogroups present in at least one placozoan and one bilaterian but absent in all medusozoans

```{r}
one_X_one_Y_none_Z(placozoa, bilateria, hydrozoa)
```

***

##### Orthogroups present in at least one placozoan and one bilaterian but absent in both Hydractinia


```{r}
one_X_one_Y_none_Z(placozoa, bilateria, hydractinia)
```
***
##### Orthogroups present in at least one placozoan and one bilaterian but absent in one hydrozoan

```{r}
for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "clytia_hemisphaerica", "hydra_magnipapillata")){
  one_X_one_Y_none_Z(placozoa, bilateria, taxon)
  cat("\n\n")
}
```

***

#### Potential losses since split with Ctenoophora + sponge + Placozoa (CSP)

```{r}
csp <- fuse_taxa(c("Ctenophora", "Porifera", "Placozoa"))
csp
```

***

##### Orthogroups present in at least one of CSP and one bilaterian but absent in all cnidarians

```{r}
one_X_one_Y_none_Z(csp, bilateria, cnidaria)
```

***

##### Orthogroups present in at least one of CSP and one bilaterian but absent in all medusozoans


```{r}
one_X_one_Y_none_Z(csp, bilateria, medusozoa)
```

***

##### Orthogroups present in at least one of CSP and one bilaterian but absent in all hydrozoans

```{r}
one_X_one_Y_none_Z(csp, bilateria, hydrozoa)
```
***
##### Orthogroups present in at least one of CSP and one bilaterian but absent in both hydractinia

```{r}
one_X_one_Y_none_Z(csp, bilateria, hydractinia)
```

##### Orthogroups present in at least one of CSP and one bilaterian but absent in one hydrozoan

```{r}
for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "clytia_hemisphaerica", "hydra_magnipapillata")){
  one_X_one_Y_none_Z(csp, bilateria, taxon)
  cat("\n\n")
}
```

***

##### Orthogroups present in at least one of CSP but absent in all cnidarians

```{r}
one_X_none_Y(csp, cnidaria)
```

***

#####  Orthogroups present in at least one of CSP but absent in all medusozoans

```{r}
one_X_none_Y(csp, medusozoa)
```

***

#####  Orthogroups present in at least one of CSP but absent in all hydrozoans

```{r}
one_X_none_Y(csp, hydrozoa)
```

***

#####  Orthogroups present in at least one of CSP but absent in both Hydractinia

```{r}
one_X_none_Y(csp, hydractinia)
```

#####  Orthogroups present in at least one of CSP but absent in one hydrozoan 

```{r}
for (taxon in c("hydractinia_echinata", "hydractinia_symbiolongicarpus", "hydra_magnipapillata", "clytia_hemisphaerica")){
  one_X_none_Y(csp, taxon)
  cat("\n\n")
}
```

***

#### Potential losses since split between (non-metazoans + Ctenophora + Porifera + Placozoa)  and (Cnidaria+Bilateria)

```{r}
ancestor <- fuse_taxa(c("Non-metazoans","Ctenophora", "Porifera", "Placozoa"))
ancestor
```
***
##### Orthogroups present in at least one early-branching taxon and absent in all cnidarians

```{r}
one_X_none_Y(ancestor, cnidaria)
```
***
##### Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in H. echinata

```{r}
one_X_one_Y_none_Z(ancestor, cnidaria, "hydractinia_echinata")
```
***
##### Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in H. symbioongicarpus

```{r}
one_X_one_Y_none_Z(ancestor, cnidaria, "hydractinia_symbiolongicarpus")
```

***
##### Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in Hydra


```{r}
one_X_one_Y_none_Z(ancestor, cnidaria, "hydra_magnipapillata")
```

***

##### Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in both Hydractinia


```{r}
one_X_one_Y_none_Z(ancestor, cnidaria, hydractinia)
```

***

##### Orthogroups present in at least one early-branching taxon and at least one cnidarian but absent in Clytia

```{r}
one_X_one_Y_none_Z(ancestor, cnidaria, "clytia_hemisphaerica")
```

***
##### Orthogroups present in at least one early-branching taxon and Hydra but absent in both Hydractinia

```{r}
one_X_one_Y_none_Z(ancestor, "hydra_magnipapillata", hydractinia)
```

##### Orthogroups present in at least one early-branching taxon and one Hydractinia but absent in Hydra

```{r}
one_X_one_Y_none_Z(ancestor, hydractinia, "hydra_magnipapillata")
```

***

##### Orthogroups present in at least one early-branching taxon and one bilaterian but absent in all cnidarians	

```{r}
one_X_one_Y_none_Z(ancestor, bilateria, cnidaria)
```

***
##### Orthogroups present in at least one early-branching taxon and one bilaterian but absent in both Hydractinia

```{r}
one_X_one_Y_lost_one_Z(ancestor, bilateria, hydractinia)
```

***
##### Orthogroups present in at least one early-branching taxon and one bilaterian but absent in one hydrozoan

```{r}
for (species in hydrozoa){
  one_X_one_Y_none_Z(ancestor, bilateria, species)
  cat("\n\n")
} 
```

***

##### Orthogroups present in at least one early-branching taxon and one bilaterian but absent in all hydrozoans

```{r}
one_X_one_Y_none_Z(ancestor, bilateria, hydrozoa)
```
***

##### Orthogroups present in at least one early-branching taxon and one bilaterian but absent in all medusozoans

```{r}
one_X_one_Y_none_Z(ancestor, bilateria, medusozoa)
```
***

##### Orthogroups present in at least one early-branching taxon and one bilaterian but absent in Nematostella

```{r}
one_X_one_Y_none_Z(ancestor, bilateria, "nematostella_vectensis")
```


***

##### Orthogroups present in at least one early-branching taxon and one bilaterian

```{r}
one_X_one_Y_none_Z(bilateria, ancestor)
```

***

#### Gene counts in cnidarian-specific orthogroups

```{r}
count_orthogroups(cnidaria)
```



