This folder contains software and scripts used in this study.
(1) mHapSuite. mHapSuite-2.0-jar-with-dependencies.jar is binary version of mHapSuite. The source code and documentation for mHapSuite are available at https://github.com/yoyoong/mHapSuite.
(2) LOLA.html: Scripts for region-set enrichment analysis.
(3) rGREAT.html: Enrichment analysis of tissue-specific genes in genomic regions.
(4) Segment_discovery.html: Scripts for genome segmentation using DNA methylation patterns
(5) In_house.html: A method developed in this study to test the enrichment of MHBs in open chromatin regions 
