The **Data** depository contains imput data for integration site anlysis and mixture models.

*Sample_info.txt* and *Sample_info_Demeulemeester.txt* files contain tables with information about the samples. The tables are loaded by R script and serves as information for the preparation of figures.

Following directories contain information about the integration sites or another information related to the analysis.
  - **IS** - the directory where information describing integration sites is stored. The directory contains sample-specific directories where sequences of ranges around the integration sites are stored. *.txt* files inside the directories represent genomic sequences surrounfing the IS in single-column table. When running the code, coordinates of the integration sites should be stored in sample-specific directories.
  	      - *.bed* files contain single-nucleotide ranges of LTR proximal genomic nuclotides. Theese data sets were part of previously published work but were not publicly available before.
  	      - *IS_coordinated_info.txt* contains additional information regarding the BED files.
  - **Annotations** - The directory contains consensus Alu sequence in FASTA format.

  

