chr1	18766	20237	19162	19949	+	Cre01.g000017.t1.1	Cre01.g000017.t1.1		18766,19329	19178,20237	
chr1	20356	23957	20397	23371	+	Cre01.g000033.t1.1	Cre01.g000033.t1.1		20356,20760,21138,21514,21987,22454,22863,23107,23371	20687,21065,21443,21819,22132,22699,22948,23250,23957	
chr1	24026	30617	24125	29578	+	RWP14	Cre01.g000050.t1.1		24026,28291,28842,29347	28105,28644,29091,30617	putative RWP-RK domain transcription factor [PMID: 15785851], however the domain is non-canonical (RWPaqk)
chr1	30776	41037	31028	40104	+	Cre01.g000100.t1.1	Cre01.g000100.t1.1		30776,31263,32866,33147,33515,33928,34568,34709,35082,35540,36446,37261,37497	31109,32741,32957,33382,33752,34431,34593,34975,35361,36235,37104,37325,41037	
chr1	41896	46547	42100	45405	+	ZRT2	Cre01.g000150.t1.2		41896,42401,42794,43826,44472	42208,42624,43577,44278,46547	
chr1	46553	51525	47102	51470	-	Cre01.g000200.t1.1	Cre01.g000200.t1.1		51317,50832,50294,49970,49670,49283,48891,48404,48177,47758,47473,46553	51525,51144,50674,50085,49797,49431,49179,48572,48230,48030,47622,47279	
chr1	51590	54035	52232	53677	-	SNR1	Cre01.g000250.t1.2		53421,53150,52510,51590	54035,53260,52791,52342	
chr1	54136	57919	54370	57192	+	GDP8	Cre01.g000300.t1.1		54136,54661,55107,55443,55785,56011,56249,56619	54516,54954,55253,55620,55880,56054,56471,57919	Predicted glycerophosphodiester phosphodiesterasehydrolase in the hydrolase, alpha/beta fold family.
chr1	57977	60685	58149	60651	-	Cre01.g000350.t1.1	Cre01.g000350.t1.1		60415,59935,59534,59063,58628,57977	60685,60102,59707,59271,58849,58400	Predicted oxidoreductase; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin reductase-type FAD-binding domain; Riboflavin synthase-like beta-barrel
chr1	60740	64955	60976	64855	-	AXL3	Cre01.g000400.t1.2		64670,64309,64070,63551,63248,62876,62587,62247,61834,61299,60740	64955,64538,64122,63767,63336,63064,62742,62393,62064,61616,61111	belongs to a tandem cluster of three related genes for GT77 family proteins
chr1	65056	70197	65397	68924	+	AXL2	Cre01.g000450.t1.2		65056,65647,66033,66757,67235,67551,67898,68332,68786	65467,65699,66246,67040,67390,67691,68122,68637,70197	belongs to a tandem cluster of three related genes for GT77 family proteins
chr1	70246	77235	70362	75976	+	AXL5	Cre01.g000500.t1.1		70246,72332,72641,73337,73666,74159,74448,74775,75231,75703	70432,72384,72998,73425,73962,74314,74588,74999,75536,77235	belongs to a tandem cluster of three related genes for GT77 family proteins
chr1	77366	83717	78082	83423	+	Cre01.g000550.t1.2	Cre01.g000550.t1.2		77366,78831,79727,80069,80874,81403,81746,82001,82382,82808	78559,79413,79795,80634,81149,81500,81794,82099,82558,83717	
chr1	83750	88945	84539	88716	-	Cre01.g000600.t1.2	Cre01.g000600.t1.2		88595,88167,87621,87149,86967,86577,85962,85748,85397,84957,83750	88945,88279,87753,87273,87013,86760,86225,85797,85508,85142,84680	
chr1	89576	97537	89925	96397	+	AMX2	Cre01.g000650.t1.1		89576,90394,90628,90936,91413,92196,92651,93002,93366,93673,93920,94256,94512,94923,95272,95511,95824,96244	89935,90488,90711,91253,91558,92366,92771,93219,93497,93739,94033,94305,94646,95072,95345,95674,95919,97537	possibly peroxisomal; contains PTS1 canonical sequence
chr1	97540	103735	97833	103396	-	Cre01.g000700.t1.1	Cre01.g000700.t1.1		103365,102941,102589,102006,101769,101426,101079,100163,97540	103735,103221,102672,102231,101827,101602,101190,100291,99818	Predicted zinc finger, RING-type; leucine-rich repeat family protein
chr1	103896	110765	104510	109975	-	Cre01.g000750.t1.1	Cre01.g000750.t1.1		110349,109969,109550,109062,108713,108321,107986,107567,107147,106113,103896	110765,110082,109654,109220,108786,108432,108110,107687,107295,106829,105912	Predicted zinc finger, RING-type protein; Tmemb_185A domain containing protein
chr1	111401	113923	111820	113501	-	CGL136	Cre01.g000800.t1.2		113731,113465,113077,112628,112272,111401	113923,113647,113170,112735,112369,111967	
chr1	111401	113935	111820	113501	-	CGL136	Cre01.g000800.t2.1		113773,113465,113077,112628,112272,111401	113935,113647,113170,112735,112369,111967	
chr1	114410	116415	115141	116361	-	CPLD38	Cre01.g000850.t1.2		116273,115828,114410	116415,116147,115306	
chr1	116526	120738	116624	119827	+	CPLD20	Cre01.g000900.t1.2		116526,117253,117567,118025,118229,118608,118911,119356	116700,117413,117710,118092,118391,118754,119147,120738	Predicted protein of unknown function containing DUF135 domain; Conserved expressed protein
chr1	121436	126517	121580	125833	+	MFT13	Cre01.g000950.t1.1		121436,121981,122501,122965,124367,124695,125235,125470	121698,122241,122682,124046,124443,124814,125344,126517	Similar to MFS-1 sugar transporter with Spinster-like transmembrane topology
chr1	126580	132075	126882	131869	-	Cre01.g001000.t1.1	Cre01.g001000.t1.1		131774,131655,131337,130986,130236,129457,128796,127986,127196,126580	132075,131708,131532,131158,130805,129939,129356,128600,127696,127078	
chr1	133427	138095	134270	138013	-	Cre01.g001100.t1.2	Cre01.g001100.t1.2		137728,137451,136851,136464,136168,135852,135344,134971,133427	138095,137516,137239,136626,136278,135989,135654,135049,134774	
chr1	138226	151966	138378	151815	+	Cre01.g001150.t1.1	Cre01.g001150.t1.1		138226,138603,138775,139196,139866,140544,141312,141727,148360,148831,149142,149597	138429,138631,138895,139324,140150,140636,141440,148056,148394,148933,149380,151966	
chr1	152546	165736	152757	163488	+	MAPKKK14	Cre01.g001200.t1.1		152546,153329,154482,155607,158698,159982,160865,161261,161814,162246,162504,162769,163310	153098,153569,155414,158457,159617,160472,161005,161549,161993,162295,162538,162937,165736	Mitogen activated protein kinase kinase kinase
chr1	166882	177525	166977	176034	+	Cre01.g001250.t1.2	Cre01.g001250.t1.2		166882,167187,167398,167781,168655,175716	167111,167265,167604,168542,175479,177525	
chr1	179762	209575	180033	208360	+	Cre01.g001300.t1.1	Cre01.g001300.t1.1		179762,180238,180617,181081,181888,182224,182494,182934,183816,184212,184961,185571,186078,186645,187034,187318,187664,188221,189340,190760,191228,191658,191985,192301,192597,193097,194407,195724,196509,197823,198731,199785,200813,201325,201825,202347,205223,205521,205856,206357,206762,207050,207514	180139,180342,180818,181558,181963,182366,182574,183040,183873,184373,185341,185701,186288,186896,187149,187390,187952,189222,190560,190897,191347,191754,192156,192388,192775,194155,195427,196328,197624,198417,199490,200434,200904,201498,201895,204399,205258,205611,206048,206396,206886,207167,209575	
chr1	209956	218641	210474	218415	-	Cre01.g001350.t1.2	Cre01.g001350.t1.2		218318,217687,217223,216828,216475,215964,215640,215363,214863,214208,213676,213119,212426,211870,211358,210974,209956	218641,217766,217274,216910,216542,216220,215754,215442,215016,214325,213770,213330,212755,212210,211468,211032,210679	ATP-binding cassette (ABC) transporter with ATPase, AAA+ type, core
chr1	218742	224662	219240	223832	+	ZMP1	Cre01.g001400.t1.1		218742,219630,220436,221741,222177	219256,220231,221558,221992,224662	Similar to leishmanolysin-like peptidase (peptidase M8 family); neutral zinc metallopeptidases; zinc-binding site
chr1	225012	229655	225260	229296	+	Cre01.g001450.t1.2	Cre01.g001450.t1.2		225012,225904,226459,226836,227264,227824	225416,226001,226522,226917,227506,229655	Contains IQ calmodulin-binding region and P-loop containing nucleoside triphosphate hydrolase domain
chr1	230216	237771	230714	237534	-	OPR1	Cre01.g001501.t1.1		236650,235779,235228,234759,234337,234001,233469,233110,232826,232134,231295,230216	237771,236121,235433,234867,234419,234044,233680,233235,232942,232354,231971,230980	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr1	237942	243824	238089	242832	+	TIF3	Cre01.g001550.t1.1		237942,239070,239843,240849,241154,241712,242267,242718	238206,239306,240311,240924,241229,241942,242344,243824	
chr1	245102	248187	245202	247254	+	Cre01.g001600.t1.2	Cre01.g001600.t1.2		245102,246497	246275,248187	
chr1	248746	253111	249231	253003	-	Cre01.g001650.t1.2	Cre01.g001650.t1.2		252951,252485,251630,250727,250424,249701,248746	253111,252696,251740,251265,250508,250077,249427	
chr1	253212	264398	253316	263343	+	DAB1	Cre01.g001657.t1.1		253212,253975,254630,255069,255416,263314	253439,254067,254795,255205,255563,264398	May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	264835	268411	266197	268092	-	Cre01.g001664.t1.1	Cre01.g001664.t1.1		268000,267817,267389,267042,264835	268411,267847,267493,267101,266620	
chr1	268506	270501	269722	270378	-	Cre01.g001671.t1.1	Cre01.g001671.t1.1		270366,268506	270501,269968	
chr1	272552	286183	272792	284242	+	Cre01.g001678.t1.1	Cre01.g001678.t1.1		272552,273544,274329,274754,275344,275768,276202,276609,277039,277439,277934,278187,278585,279009,279147,279632,280620,281089,281448,281942,282693,282963,283422,283706,283947	273011,273800,274391,275000,275626,275850,276261,276695,277095,277619,278001,278294,278767,279086,279218,280156,280704,281153,281593,282312,282742,283180,283498,283835,286183	
chr1	272552	286183	272792	284242	+	Cre01.g001678.t2.1	Cre01.g001678.t2.1		272552,273544,274329,274754,275344,275768,276202,276609,277039,277439,277934,278187,278585,279009,279632,280620,281089,281448,281942,282693,282963,283422,283706,283947	273011,273800,274391,275000,275626,275850,276261,276695,277095,277619,278001,278294,278767,279086,280156,280704,281153,281593,282312,282742,283180,283498,283835,286183	
chr1	286442	290513	286616	289950	+	Cre01.g001685.t1.1	Cre01.g001685.t1.1		286442,289011	288740,290513	
chr1	291006	305011	294003	303294	-	Cre01.g001700.t1.1	Cre01.g001700.t1.1		304631,303183,302922,302532,302171,301670,301197,300689,300240,298968,298516,297941,297195,296970,296464,295926,295616,295238,291006	305011,303424,303031,302772,302408,301914,301437,300969,300511,300012,298656,298170,297763,297013,296745,296143,295680,295379,295024	
chr1	306538	313443	307052	313317	-	TIG1	Cre01.g001750.t1.2		313218,312630,312377,312134,311743,311449,311304,311053,310725,309794,309545,309325,309049,308682,308309,307567,306538	313443,312761,312490,312205,311808,311499,311354,311135,310860,309887,309624,309384,309186,308783,308401,307671,307223	Involved in protein folding; contains a peptidyl-prolyl cis-trans isomerase (FKBP-type) domain and N- and C-terminal domains involved in ribosome-binding; probably located in chloroplast stroma
chr1	313542	324653	313705	324021	+	FAP403	Cre01.g001800.t1.1		313542,314234,314755,314963,315599,316430,316659,316922,317373,319494,319887,320057,320271,320531,320841,321198,321551,321959,322190,322894,323180,323569,323913	313864,314330,314878,315035,315694,316522,316829,317048,317740,319766,319946,320122,320333,320743,321010,321319,321696,322031,322341,322965,323316,323617,324653	NimA-related Serine/Threonine protein kinase
chr1	324656	329091	325767	328801	-	Cre01.g001950.t1.2	Cre01.g001950.t1.2		328779,328366,327380,327043,326732,326421,324656	329091,328541,327610,327167,326771,326484,326231	
chr1	329307	333421	329774	331930	-	Cre01.g001983.t1.1	Cre01.g001983.t1.1		333235,333106,332975,332334,331923,331300,330936,330352,330042,329307	333421,333125,332987,332548,332162,331404,330974,330570,330112,329864	C2 domain is a Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others)
chr1	329307	333421	329774	331930	-	Cre01.g001983.t2.1	Cre01.g001983.t2.1		333235,333106,332975,332334,331923,331300,330936,330352,330042,329307	333421,333125,332987,332548,332162,331404,330974,330531,330112,329864	C2 domain is a Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others)
chr1	333572	340433	333692	339542	+	APT1	Cre01.g002050.t1.1		333572,334658,335237,335639,336179,336873,337300,337798,338210,338807,339327	334282,334739,335305,335836,336422,336959,337403,337935,338463,339072,340433	Acid phosphatase containing 2 catalytic histidines
chr1	340482	344893	340563	344167	+	Cre01.g002100.t1.2	Cre01.g002100.t1.2		340482	344893	
chr1	345026	347821	346407	347725	-	Cre01.g002150.t1.2	Cre01.g002150.t1.2		347629,347360,345026	347821,347557,347136	
chr1	347992	350436	348093	349756	+	RPB6	Cre01.g002200.t1.1		347992,348209,348322,348681,349245,349713	348116,348245,348497,348732,349312,350436	putative DNA-directed RNA polymerase subunit, sequence similarity to yeast RNB6 (13-15 kDa)
chr1	355696	360627	355732	360460	+	Cre01.g002201.t1.2	Cre01.g002201.t1.2		355696,356078,356913,357158,357576,358144,358660,359230	355837,356531,357030,357315,357872,358445,359052,360627	
chr1	355696	360627	355732	360460	+	Cre01.g002201.t2.1	Cre01.g002201.t2.1		355696,356078,356913,357158,357576,358144,358663,359230	355837,356531,357030,357315,357872,358445,359052,360627	
chr1	350581	355595	351062	355274	-	Cre01.g002203.t1.1	Cre01.g002203.t1.1		354300,353737,353391,352561,351726,350581	355595,354175,353633,353235,352218,351418	
chr1	360916	364167	360991	363435	+	Cre01.g002227.t1.2	Cre01.g002227.t1.2		360916,361437,361803,362188,362485,362694,362868,363050,363218,363435	361293,361521,361935,362283,362537,362735,362935,363101,363284,364167	
chr1	364216	367867	365805	366992	+	Cre01.g002234.t1.1	Cre01.g002234.t1.1		364216,364683,364985,365225,365442,365608,365782,366138,366343,366572,366992	364568,364767,365135,365320,365494,365649,365867,366200,366409,366676,367867	
chr1	364216	367867	365805	366992	+	Cre01.g002234.t2.1	Cre01.g002234.t2.1		364216,364683,364985,365225,365442,365608,365782,366138,366343,366572,366992	364568,364767,365135,365320,365494,365649,365849,366200,366409,366676,367867	
chr1	367916	372098	368261	370807	+	NAT4	Cre01.g002250.t1.2		367916,369148,369421,370061,370645	368499,369200,369555,370300,372098	Histone acetyltransferase (GNAT/MYST superfamily), ChromDB HAG3406
chr1	372676	375035	373199	374988	-	CYN19-2	Cre01.g002300.t1.2		374919,374423,374133,373861,373580,372676	375035,374477,374206,373989,373656,373314	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; identical to AF5226 CYP1; cytosolic; similar to At4g38740 (ROC1, AtCYP18-3) and At2g21130+ (AtCYP19-2); found in the flagellar proteome;  Similar to Radial Spoke Protein RSP12
chr1	375366	383307	375592	382711	+	Cre01.g002350.t1.1	Cre01.g002350.t1.1		375366,376497,377095,377629,378112,378598,379135,379584,380635,381175,381690,381976,382568	375979,376598,377156,377720,378248,378658,379292,379648,380805,381346,381767,382138,383307	
chr1	384276	388645	384898	388158	-	TGL1	Cre01.g002400.t1.1		388521,388082,387582,386974,385863,385447,384276	388645,388160,387687,387114,386034,385524,385015	
chr1	437790	440875	437883	440629	-	Cre01.g002451.t1.1	Cre01.g002451.t1.1		440599,440447,439946,439507,439042,438534,438023,437790	440875,440508,440302,439704,439187,438673,438104,437888	
chr1	441094	444942	442099	444898	-	COP1	Cre01.g002500.t1.2		444808,444598,444430,444101,443795,443266,442471,441094	444942,444687,444534,444176,443865,443391,442550,442193	Opsin-related, retinal binding protein; also described as Chlamyopsin 2 (COP2); Genbank entry AF295371; shows evidence for alternative splicing; present in thylakoid-enriched fraction based on mass spectrometric peptide identification
chr1	445086	451638	445632	449618	+	FAP335	Cre01.g002550.t1.1		445086,445462,446694,447299,447756,448085,448492,449072,449420	445306,445839,446834,447463,447851,448129,448700,449192,451638	
chr1	452176	455677	452318	454948	+	Cre01.g002600.t1.2	Cre01.g002600.t1.2		452176,453040,454093	452566,453628,455677	
chr1	456376	459334	456729	458819	+	Cre01.g002650.t1.2	Cre01.g002650.t1.2		456376,457441	457052,459334	
chr1	459396	468331	459515	468110	+	Cre01.g002700.t1.2	Cre01.g002700.t1.2		459396,459844,460494,461022,461520,461872,462409,462807,463887,464124,465469,466411,466908,467579	459590,459888,460585,461130,461570,461940,462549,463637,463922,465245,465909,466608,467162,468331	
chr1	468386	472847	468450	471883	+	Cre01.g002750.t1.2	Cre01.g002750.t1.2		468386,469472,469861,470113,470484,470791,471047,471361,471799	469098,469592,469951,470163,470510,470852,471141,471501,472847	
chr1	468386	472847	468450	471883	+	Cre01.g002750.t2.1	Cre01.g002750.t2.1		468386,469472,469861,470113,470484,470791,471047,471361,471799	469098,469592,469951,470142,470510,470852,471141,471501,472847	
chr1	473706	504317	473921	504296	+	SRR24A	Cre01.g002787.t1.1		473706,474250,474453,474807,475053,475450,475777,476064,476341,476562,476854,477093,477346,477661,477945,478195,478688,478858,479053,480058,480349,480624,480896,481505,481800,482057,482399,482729,482955,483161,483495,483653,483922,484149,484565,484857,485237,485520,485965,486349,486939,487561,487725,488001,488188,488504,488773,489000,489202,489343,489608,489894,490338,490559,490900,491291,491519,491872,492146,492348,493014,493231,493548,493818,494090,494361,494599,494972,495259,495511,495803,496152,496509,496919,497131,497984,498294,498520,498713,499040,499284,499633,499917,500124,500393,500748,500971,501130,501328,501552,502077,502259,502478,502933,503134,503399,503794,504058,504296	473940,474343,474483,474840,475132,475496,475883,476166,476420,476632,476951,477151,477367,477746,478065,478408,478726,478969,479099,480167,480455,480751,481373,481647,481945,482252,482551,482827,482966,483392,483532,483806,484001,484423,484701,485125,485359,485811,486214,486811,487456,487603,487788,488100,488235,488564,488871,489049,489253,489440,489765,490210,490447,490776,490990,491379,491742,492037,492246,492881,493104,493431,493683,493963,494240,494488,494823,495122,495359,495646,495981,496379,496798,496985,497390,498083,498417,498570,498797,499148,499421,499738,499968,500189,500520,500808,501035,501195,501366,501962,502136,502395,502741,503020,503284,503692,503880,504186,504317	Scavenger receptor cysteine-rich protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins; model should be fused with downstream Cre01.g002824; null-allele passenger mutation was isolated (PMID 29743196)
chr1	504486	507767	504531	507694	+	SRR24B	Cre01.g002824.t1.1		504486,504656,504930,505182,505477,505778,506118,506559,506751,507025,507225,507418,507547,507694	504539,504801,505027,505342,505649,505938,506482,506627,506817,507105,507293,507441,507575,507767	Has multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins; model should be fused with upstream Cre01.g002787
chr1	507816	527067	508046	525729	+	SRR24	Cre01.g002861.t1.1		507816,507977,508160,508382,508696,509136,509408,509666,509986,510163,510457,510867,511183,511484,511765,511954,512540,512824,512969,513225,513439,513660,514042,514215,514404,514578,514881,515063,515247,515465,515670,515890,516114,516421,516613,517531,517713,518373,518693,519021,519201,519330,519695,519848,520020,520166,520410,520749,520964,521450,521584,521872,522355,522605,522828,523039,523294,523600,523936,524189,524502	507872,508078,508195,508489,509015,509266,509561,509854,510047,510355,510751,511049,511366,511639,511843,512056,512657,512876,513035,513285,513536,513836,514082,514251,514478,514694,514940,515147,515292,515570,515759,515961,516192,516479,516689,517621,517877,518575,518827,519095,519233,519519,519733,519894,520076,520279,520611,520831,521327,521478,521719,522165,522469,522672,522884,523122,523428,523780,524052,524373,527067	null-allele passenger mutation was isolated (PMID 29743196)
chr1	527090	528815	528052	528748	-	Cre01.g002900.t1.2	Cre01.g002900.t1.2		528680,528435,528197,527090	528815,528469,528288,528088	
chr1	528880	533195	529558	532984	-	Cre01.g002950.t1.1	Cre01.g002950.t1.1		532954,532631,531980,531093,530521,528880	533195,532708,532432,531647,530798,529688	
chr1	533296	537931	533546	537837	+	Cre01.g003000.t1.1	Cre01.g003000.t1.1		533296,534189,534484,534949,535372,535729,536093,536697	533869,534300,534601,535097,535507,535811,536449,537931	
chr1	538051	548685	538465	548373	-	SEC8	Cre01.g003050.t1.2		548214,547786,547460,547140,546657,546103,545932,545543,545101,544542,543945,543463,542813,541301,540890,540575,540029,539759,539460,538051	548685,547989,547561,547265,546923,546417,545985,545782,545364,544818,544162,543797,543158,541384,541030,540755,540278,539882,539604,539271	Hypothetical Conserved Protein. Similar to SEC8, a subunit of the Exocyst.
chr1	548796	553667	549006	553328	+	Cre01.g003100.t1.1	Cre01.g003100.t1.1		548796,549330,549715,550113,550442,550662,550938,551255,551755,552087,552532,552815,553214	549174,549500,549960,550216,550544,550746,551076,551597,551888,552388,552656,552883,553667	null-allele mutant was isolated (PMID 29743196)
chr1	548796	553667	549006	553328	+	Cre01.g003100.t2.1	Cre01.g003100.t2.1		548796,549330,549715,549933,550049,550442,550662,550938,551255,551755,552087,552532,552815,553214	549174,549500,549829,549960,550216,550544,550746,551076,551597,551888,552388,552656,552883,553667	null-allele mutant was isolated (PMID 29743196)
chr1	553686	559455	554438	559223	-	Cre01.g003150.t1.2	Cre01.g003150.t1.2		559156,558831,558445,558070,557642,557202,556059,555520,555151,554795,553686	559455,559013,558707,558199,557856,557398,556980,555725,555268,554872,554540	the U5g snRNA, not a protein gene, is in the vicinity
chr1	559606	563426	559682	562543	+	Cre01.g003200.t1.2	Cre01.g003200.t1.2		559606,560019,560290,560662,561151,561483,561882,562311	559808,560128,560460,560954,561278,561658,562121,563426	
chr1	563646	566147	563676	565370	+	CSB1	Cre01.g003250.t1.1		563646,565022,565247	564903,565132,566147	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	566226	571627	566837	571044	+	Cre01.g003300.t1.2	Cre01.g003300.t1.2		566226,567044,567566,567943,568244,568667,569062,569681,570084,570329,570646,570956	566895,567069,567662,568031,568396,568748,569180,569807,570193,570398,570778,571627	
chr1	571710	577935	572329	577647	-	Cre01.g003376.t1.1	Cre01.g003376.t1.1		577460,577127,576714,576137,575842,575489,575013,574720,574399,574046,573677,573311,572739,571710	577935,577235,576921,576265,575954,575581,575228,574835,574454,574177,573829,573493,573122,572533	
chr1	578086	583100	578311	582491	+	Cre01.g003450.t1.1	Cre01.g003450.t1.1		578086,578552,578801,579144,579492,580061,582362	578376,578689,578992,579237,579922,582113,583100	
chr1	578086	583100	578311	582491	+	Cre01.g003450.t2.1	Cre01.g003450.t2.1		578086,578552,578801,579144,579492,580064,582362	578376,578689,578992,579237,579922,582113,583100	
chr1	583696	595687	583816	595104	+	Cre01.g003463.t1.1	Cre01.g003463.t1.1		583696,584212,584530,584886,585310,585926,586382,586963,587300,587849,588289,590625,591157,591917,592496,593278,593897,594281,594599,594939	583948,584244,584741,585009,585459,586069,586615,587037,587417,588005,588405,590751,591278,592193,592663,593469,594016,594334,594733,595687	
chr1	595705	601865	596338	601802	-	Cre01.g003475.t1.1	Cre01.g003475.t1.1		601743,601528,601171,600586,600337,599870,599596,599260,597988,597610,597263,595705	601865,601579,601313,600740,600433,600134,599660,599377,598198,597665,597412,596917	
chr1	602371	606855	602966	606620	-	Cre01.g003487.t1.1	Cre01.g003487.t1.1		606274,606092,605363,604934,604456,603784,603425,602371	606855,606150,605938,605071,604578,603961,603566,603030	
chr1	606956	626077	607104	625563	+	MSH2	Cre01.g003500.t1.2		606956,607420,607721,608145,608802,610146,610647,611485,611969,612743,613099,613579,613773,614577,615130,615803,616252,616844,617309,617778,618581,621381,621993,623575,624241	607188,607505,607817,608495,608815,610291,610746,611677,612146,612844,613351,613624,614060,614895,615596,615952,616587,616986,617395,618030,621134,621688,623228,623881,626077	Forms a complex with MLH proteins
chr1	626436	628693	626642	628603	+	Cre01.g003508.t1.1	Cre01.g003508.t1.1		626436,627233,628323,628586	626718,628164,628356,628693	
chr1	644746	653360	644774	651452	+	Cre01.g003516.t1.1	Cre01.g003516.t1.1		644746,645442,645729,646230,647063,647491,647801,648341,648756,650143,650629,651296	645005,645504,645908,646787,647164,647568,648109,648448,648851,650196,650733,653360	
chr1	653607	662145	655411	661635	-	Cre01.g003524.t1.1	Cre01.g003524.t1.1		661144,660472,659866,659473,658801,658409,657956,657453,657005,656562,656108,653607	662145,660517,659976,659595,658987,658587,658092,657638,657113,656651,656266,655795	
chr1	662246	677613	662419	676780	+	Cre01.g003532.t1.1	Cre01.g003532.t1.1		662246,662540,662882,663586,665297,666704,667217,667768,668283,668766,669387,670435,670851,671161,671824,672338,672703,673878,674446,675031,675460,676045	662436,662568,663251,664186,666068,666762,667584,667942,668399,668939,669626,670572,670925,671418,671982,672448,672858,674056,674791,675126,675738,677613	May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	677836	680597	678276	678795	+	Cre01.g003541.t1.1	Cre01.g003541.t1.1		677836,678722	678485,680597	
chr1	680630	687445	681364	687162	-	Cre01.g003550.t1.1	Cre01.g003550.t1.1		686936,686637,686371,684348,683700,683248,682872,682569,682146,680630	687445,686680,686395,685795,683794,683405,682927,682639,682206,681709	
chr1	688996	690516	689721	690037	+	Cre01.g003600.t1.2	Cre01.g003600.t1.2		688996	690516	
chr1	694650	700899	695840	700810	-	Cre01.g003650.t1.1	Cre01.g003650.t1.1		700623,698882,698706,698503,697791,697412,696685,694650	700899,698935,698765,698523,697858,697688,697029,696523	
chr1	694650	700899	695840	697671	-	Cre01.g003650.t2.1	Cre01.g003650.t2.1		700623,698882,698706,698503,697791,697412,696685,694650	700899,698935,698765,698523,697858,697688,697029,696523	
chr1	701556	709087	702027	708427	+	Cre01.g003700.t1.2	Cre01.g003700.t1.2		701556,702004,706026,706529,707166,707501,708120	701915,705728,706120,706760,707280,707607,709087	
chr1	709819	725710	709980	724098	+	Cre01.g003751.t1.1	Cre01.g003751.t1.1		709819,710191,710685,711880,713088,713539,713916,714589,714940,715465,716013,716469,716840,717209,717559,718223,718539,721593	710040,710337,711705,712885,713270,713662,713995,714722,715000,715600,716111,716523,716979,717295,717909,718288,721460,725710	null-allele mutant was isolated (PMID 29743196)
chr1	726049	736490	726938	735653	+	Cre01.g003800.t1.1	Cre01.g003800.t1.1		726049,726935,727344,728867,729172,729444,729860,730202,733970	726433,727019,728571,728934,729243,729593,729982,733738,736490	
chr1	736539	738965	736800	736984	+	Cre01.g003826.t1.1	Cre01.g003826.t1.1		736539	738965	
chr1	739299	746905	739679	745254	+	CYP747A1	Cre01.g003850.t1.1		739299,739906,740160,740651,740890,741418,742076,742450,742892,743364,743822,744294,744768,745086	739799,739982,740288,740687,740981,741576,742202,742536,742957,743541,743871,744481,744861,746905	cytochrome P450, unknown function
chr1	750063	767768	751488	767424	-	Cre01.g003950.t1.1	Cre01.g003950.t1.1		767344,766911,766675,766315,766075,765819,765497,765329,765108,764789,764402,764127,763799,763622,763422,762989,762705,762331,761893,761621,760966,760716,760464,760241,758933,758639,758069,757783,757522,757356,756940,756753,756613,756393,756215,756004,755665,755453,754877,754456,754255,753900,753612,753311,752904,752396,752159,751730,750063	767768,766974,766706,766443,766123,765944,765562,765398,765202,764968,764646,764277,763972,763674,763499,763251,762818,762570,762178,761748,761479,760836,760582,760352,760055,758796,758398,757926,757617,757397,757020,756809,756645,756477,756243,756048,755805,755500,755301,754690,754335,754026,753718,753379,753011,752462,752262,751989,751546	
chr1	750063	767768	751488	767424	-	Cre01.g003950.t2.1	Cre01.g003950.t2.1		767344,766911,766675,766315,766075,765819,765497,765329,765108,764789,764402,764127,763799,763622,763422,762989,762705,762331,761893,761621,760966,760716,760464,760241,758963,758639,758069,757783,757522,757356,756940,756753,756613,756393,756215,756004,755665,755453,754877,754456,754255,753900,753612,753311,752904,752396,752159,751730,750063	767768,766974,766706,766443,766123,765944,765562,765398,765202,764968,764646,764277,763972,763674,763499,763251,762818,762570,762178,761748,761479,760836,760582,760352,760055,758796,758398,757926,757617,757397,757020,756809,756645,756477,756243,756048,755805,755500,755301,754690,754335,754026,753718,753379,753011,752462,752262,751989,751546	
chr1	767816	771798	768584	771396	-	Cre01.g004000.t1.2	Cre01.g004000.t1.2		771331,770929,770546,770288,770062,769675,768989,767816	771798,771016,770654,770318,770091,769735,769096,768710	
chr1	779809	782390	781381	781834	+	Cre01.g004050.t1.2	Cre01.g004050.t1.2		779809,781351,781641	780239,781518,782390	
chr1	782819	804650	783577	802329	+	Cre01.g004124.t1.1	Cre01.g004124.t1.1		782819,783954,785159,785349,785668,785859,786158,786322,786542,786767,787087,787456,787765,788140,788402,788650,789048,789287,789679,790082,790407,791047,791287,791515,791823,793174,793521,793978,794281,794498,794793,796020,796244,796458,796666,797572,797738,798020,798386,798953,799370,799553,799865,800193,800416,800703,801326,801561,801835,802259	783660,784020,785190,785477,785716,785984,786223,786388,786636,786946,787331,787606,787938,788192,788479,788912,789161,789526,789967,790206,790917,791167,791402,791626,792948,793331,793841,794121,794376,794539,794898,796051,796276,796515,796721,797616,797878,798067,798780,799182,799383,799633,799991,800299,800484,800810,801392,801664,802094,804650	
chr1	782819	804650	783577	802329	+	Cre01.g004124.t2.1	Cre01.g004124.t2.1		782819,783954,785159,785349,785668,785859,786158,786322,786542,786767,787087,787456,787765,788140,788402,788650,789048,789287,789679,790082,790407,791047,791287,791515,791823,793174,793527,793978,794281,794498,794793,796020,796244,796458,796666,797572,797738,798020,798386,798953,799370,799553,799865,800193,800416,800703,801326,801561,801835,802259	783660,784020,785190,785477,785716,785984,786223,786388,786636,786946,787331,787606,787938,788192,788479,788912,789161,789526,789967,790206,790917,791167,791402,791626,792948,793331,793841,794121,794376,794539,794898,796051,796276,796515,796721,797616,797878,798067,798780,799182,799383,799633,799991,800299,800484,800810,801392,801664,802094,804650	
chr1	807729	826390	808321	824328	+	Cre01.g004157.t1.2	Cre01.g004157.t1.2		807729,808298,808594,808852,809003,809265,809489,809787,810235,810428,811578,811850,812249,812550,812764,812919,813114,813365,813739,813977,814398,814880,815158,815770,816008,816412,817892,818144,818631,818942,819161,819457,819676,820058,820255,820515,820671,821342,821905,822110,822497,822790,823111,823503,823858,824200	808196,808401,808657,808883,809131,809313,809614,809852,810304,810522,811757,812094,812399,812654,812832,812971,813191,813627,813852,814213,814677,815013,815659,815890,816238,817749,817984,818479,818789,819022,819246,819550,819822,820102,820395,820562,821122,821609,821940,822236,822603,822858,823218,823673,824038,826390	null-allele mutant was isolated (PMID 29743196)
chr1	826413	833028	827020	832655	-	Cre01.g004200.t1.2	Cre01.g004200.t1.2		832598,832349,831773,830405,830196,829896,829503,829158,828481,828015,827788,827441,826413	833028,832422,832190,831570,830256,829987,829697,829281,828785,828189,827848,827541,827287	
chr1	833155	834660	833254	833981	+	DLT3	Cre01.g004250.t1.2		833155,833374,833557,833859	833284,833460,833662,834660	Light Chain Associated with Inner Arm Dynein I1/f and Cytoplasmic Dynein 1b
chr1	834663	841428	835375	841325	-	ASN1	Cre01.g004300.t1.2		841221,840636,839756,838884,838680,837823,837346,837071,836681,836462,836216,835775,835513,834663	841428,840843,839950,839042,838728,837956,837468,837202,836861,836508,836302,836003,835589,835387	Asparagine synthase (glutamine-hydrolyzing)
chr1	841529	850578	841582	849522	+	HLM1	Cre01.g004350.t1.2		841529,842350,842673,843193,843499,843843,844074,844747,845038,845442,845714,846124,846374,846673,847071,847468,847755,848233,848641,848958	841797,842416,842846,843318,843567,843953,844169,844821,845142,845506,845843,846219,846433,846794,847191,847587,847832,848397,848763,850578	Involved in circadian rhythms.  Matsuo et al.'s (2008) roc77 and roc15 (rhythm of chloroplast) circadian rhythm mutant loci map here; they refer to this gene model as ALIX, although this designation is not generally accepted
chr1	852289	853940	852592	853358	+	Cre01.g004400.t1.2	Cre01.g004400.t1.2		852289,852884,853016,853226	852772,852915,853103,853940	
chr1	853943	857330	854463	857122	-	CPLD42	Cre01.g004450.t1.2		857232,857080,856695,856459,856131,855910,855541,855292,854793,853943	857330,857137,856834,856508,856174,856012,855644,855388,854959,854529	Contains domain of unknown function (DUF1517). This family consists of several hypothetical glycine rich plant and bacterial proteins of around 3 residues in length.
chr1	857469	864406	857571	863725	+	LEU1	Cre01.g004500.t1.2		857469,857692,858020,858525,860407,861074,861383,861933,862254,862653,863179,863587	857602,857783,858279,858633,860547,861148,861506,862033,862389,862750,863337,864406	putative 3-isopropylmalate dehydratase (EC 4.2.1.33), large subunit; isopropylmalate isomerase; similarity to rice IPMI (GenBank XP_463952); predicted as plastidic by Target-P and by homology
chr1	864599	870890	864752	870276	+	FAP190	Cre01.g004550.t1.2		864599,865089,867325,867910,868863,869219,869601,870027	864758,867067,867748,868626,869038,869417,869771,870890	Flagellar Associated Protein, found in the flagellar proteome; null-allele mutant was isolated (PMID 29743196)
chr1	871547	885124	872344	883355	+	RWP12	Cre01.g004600.t1.1		871547,872759,873119,873528,873888,875684	872386,872805,873248,873629,875426,885124	putative RWP-RK domain transcription factor [PMID: 15785851]
chr1	885747	887416	885829	886593	+	Cre01.g004651.t1.1	Cre01.g004651.t1.1		885747,886317	886171,887416	
chr1	887958	891436	888502	891380	-	Cre01.g004700.t1.2	Cre01.g004700.t1.2		891282,891073,890741,890428,889955,888990,887958	891436,891116,890877,890512,890016,889084,888608	
chr1	891737	897598	891940	896248	+	Cre01.g004750.t1.1	Cre01.g004750.t1.1		891737,892431,892681,893025,893374,893820,894227,895023,895595,895977	892052,892505,892961,893093,893439,893896,894407,895052,895695,897598	
chr1	891737	897598	891857	896248	+	Cre01.g004750.t2.1	Cre01.g004750.t2.1		891737,892431,893025,893374,893820,894227,895023,895595,895977	892052,892505,893093,893439,893896,894407,895052,895695,897598	
chr1	897757	902004	898403	900850	+	Cre01.g004800.t1.2	Cre01.g004800.t1.2		897757,898765,899368,899672,900024,900189,900661	898685,899154,899491,899810,900072,900482,902004	null-allele passenger mutation was isolated (PMID 29743196)
chr1	902011	912496	902558	912223	-	TXE1	Cre01.g004850.t1.1		911950,911491,911000,910477,910035,909514,909140,908811,907053,906743,906177,905786,905137,904855,904537,903858,903425,902896,902011	912496,911845,911226,910746,910268,909777,909259,908859,908577,906909,906502,905935,905607,905008,904706,904302,903576,902946,902741	Transcription elongation factor, TFIIS/CRSP7
chr1	912669	915952	913799	915872	-	Cre01.g004900.t1.2	Cre01.g004900.t1.2		915803,915356,915121,914816,914545,914330,914078,912669	915952,915484,915142,914964,914636,914381,914186,913861	
chr1	916087	916739	916211	916377	+	Cre01.g004926.t1.1	Cre01.g004926.t1.1		916087	916739	
chr1	921311	925536	922850	925425	-	Cre01.g004950.t1.1	Cre01.g004950.t1.1		925350,924835,924602,924296,923997,923748,923055,921311	925536,924963,924623,924444,924088,923799,923163,922912	
chr1	925647	928048	925684	927254	+	CPLD9	Cre01.g005001.t1.1		925647,926298,926587,926953,927208	926036,926437,926674,927028,928048	
chr1	928430	933185	928841	933156	-	Cre01.g005050.t1.1	Cre01.g005050.t1.1		932984,932800,932650,932477,932329,932148,931502,931131,930765,930278,929956,929380,928430	933185,932913,932736,932561,932389,932252,931840,931316,930958,930633,930116,929745,929228	
chr1	933367	936277	933824	935875	+	Cre01.g005100.t1.1	Cre01.g005100.t1.1		933367,934106,934787,935253,935875	934034,934381,935002,935699,936277	
chr1	936477	937038	936504	936827	+	CSB3	Cre01.g005126.t1.1		936477,936704	936588,937038	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	937150	941885	938050	941786	-	SGA1	Cre01.g005150.t1.1		941696,941541,941151,940680,940328,939576,939293,938631,937150	941885,941625,941416,940850,940495,939763,939358,938757,938236	Putative aminotransferase (class V) with homology to serine glyoxylate aminotransferases from Arabidopsis (TrEMBL: 081248) and Frillaria agrestis (GenBank AAB95218); this is the longer and more abundant splicing variant SGA1a; both are predicted mitochondrial (TPlen 29) like orthologues in mouse, dog, X. laevis, C. elegans (plus Leishmania and Candida ?), but unlike Arabidopsis, C. merolae, D. discoideum, Drosophila etc... Danio rerio appears to have both a mitochondrial (79378) and a cytosolic (436603) isoform
chr1	943056	951176	944213	950392	-	TGL2	Cre01.g005200.t1.1		950346,950070,949847,949402,949229,948759,948021,947573,947106,946771,946381,945927,945420,945197,944860,944493,943056	951176,950161,949915,949561,949285,949053,948609,947887,947382,946889,946545,946138,945761,945261,945028,944562,944306	
chr1	958367	960388	958487	959343	+	Cre01.g005250.t1.2	Cre01.g005250.t1.2		958367,958852,959096	958556,958952,960388	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain; part of cluster of three putative transposases
chr1	960637	965520	960753	964437	+	Cre01.g005300.t1.2	Cre01.g005300.t1.2		960637,962601,962856,963119,963352,964190	960906,962727,962968,963185,963484,965520	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain; part of cluster of three putative transposases
chr1	968027	970638	968804	970230	+	Cre01.g005350.t1.2	Cre01.g005350.t1.2		968027,969300,969739,969983	969182,969446,969839,970638	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr1	971012	975436	971481	975081	-	Cre01.g005400.t1.1	Cre01.g005400.t1.1		975359,975055,974767,974473,974067,973855,973570,972714,972517,972233,971989,971012	975436,975082,974822,974617,974136,973888,973643,972740,972566,972342,972071,971643	possibly a 3-oxoacyl-[acyl-carrier-protein] reductase
chr1	975627	977808	975720	977407	+	RSP10	Cre01.g005450.t1.2		975627,975844,976042,976515,976906,977389	975750,975888,976255,976582,977181,977808	A subunit in the radial spoke head with multiple MORN motifs [PMID: 16507594; GI:83284715]
chr1	978997	988186	979202	987988	+	Cre01.g005500.t1.2	Cre01.g005500.t1.2		978997,979394,979915,980531,980903,981207,981855,982215,982475,982773,982989,983387,983913,984267,984587,984895,985327,986123,986605,987282,987717	979295,979537,980252,980621,980953,981595,981927,982280,982576,982853,983063,983464,984017,984341,984640,984978,985938,986233,986719,987453,988186	
chr1	988191	989356	988353	988744	-	Cre01.g005534.t1.2	Cre01.g005534.t1.2		988869,988191	989356,988767	
chr1	991247	991928	991386	991603	+	Cre01.g005543.t1.1	Cre01.g005543.t1.1		991247	991928	
chr1	991941	996584	992632	996454	-	ARL4	Cre01.g005550.t1.2		996326,995876,993038,991941	996584,996007,993149,992767	Expressed Protein. ARF-like 2, a member of the ARF/Sar1 GTPase family conserved in essentially all eukaryotes (A. thaliana ortholog - Titan5). Involved in the dynamics of the tubulin cytoskeleton probably via regulation of the assembly of alpha/beta tubulin dimers; Has 13,404 nt intron that spans many sequence gaps, may represent assembly problems with the scaffold
chr1	996677	999498	996719	998213	+	FDX8	Cre01.g005600.t1.1		996677,997263,997616,997967	996902,997324,997718,999498	
chr1	999817	1003518	1000463	1002724	+	Cre01.g005651.t1.1	Cre01.g005651.t1.1		999817,1000992,1001527,1001755	1000526,1001134,1001638,1003518	
chr1	1003567	1007127	1003865	1006159	+	Cre01.g005701.t1.2	Cre01.g005701.t1.2		1003567,1004308,1004676,1005055,1006159	1004075,1004450,1004790,1005942,1007127	
chr1	1003567	1007127	1003865	1006159	+	Cre01.g005701.t2.1	Cre01.g005701.t2.1		1003567,1004308,1004676,1005055,1006159	1004075,1004450,1004790,1005924,1007127	
chr1	1007610	1011925	1008114	1011871	-	Cre01.g005750.t1.1	Cre01.g005750.t1.1		1011795,1011359,1011119,1010854,1010515,1010151,1009539,1009148,1008554,1007610	1011925,1011428,1011178,1010917,1010615,1010230,1009747,1009269,1008772,1008316	
chr1	1012024	1021315	1012471	1021171	-	Cre01.g005813.t1.2	Cre01.g005813.t1.2		1021123,1020560,1020176,1019739,1019464,1019177,1018864,1018619,1018161,1017912,1017676,1017298,1016977,1016687,1016422,1013444,1013059,1012024	1021315,1020715,1020286,1019840,1019547,1019251,1018983,1018675,1018268,1017974,1017756,1017410,1017043,1016785,1016556,1013545,1013118,1012879	
chr1	1021426	1024377	1021802	1023847	+	FAP23	Cre01.g005850.t1.2		1021426,1022256,1022603,1023151,1023507,1023796	1021970,1022381,1022701,1023213,1023563,1024377	Cob(I)yrinic acid a,c-diamide adenosyltransferase; found in the flagellar proteome
chr1	1024380	1029645	1025002	1029567	-	Cre01.g005900.t1.1	Cre01.g005900.t1.1		1029529,1029284,1028902,1028609,1028393,1028005,1027675,1027159,1026728,1026499,1026159,1025773,1025457,1024380	1029645,1029442,1028989,1028653,1028475,1028184,1027756,1027318,1026795,1026600,1026242,1025895,1025552,1025119	
chr1	1029766	1035425	1029938	1034389	+	Cre01.g005950.t1.2	Cre01.g005950.t1.2		1029766,1030076,1030249,1030545,1030870,1031231,1031650,1032057,1032712,1032967,1033282,1033822,1034064	1029983,1030131,1030330,1030646,1031005,1031280,1031709,1032203,1032828,1033062,1033345,1033867,1035425	
chr1	1035430	1040085	1036421	1039784	-	Cre01.g006000.t1.1	Cre01.g006000.t1.1		1037990,1036779,1035430	1040085,1037787,1036421	
chr1	1041786	1048797	1042248	1048024	+	LF3	Cre01.g006050.t1.1		1041786,1042484,1042765,1043094,1043577,1044173,1046821,1047298,1047589,1047861	1042413,1042699,1042860,1043384,1043894,1046582,1047137,1047354,1047680,1048797	LF3 is involved in controlling flagellar length. Null mutants (ulf1 and ulf3) have unequal length flagella; hypomorphic alleles have long flagella. gi:37778331
chr1	1049717	1051485	1050141	1051328	-	FDX7	Cre01.g006100.t1.2		1051212,1050802,1049717	1051485,1050850,1050378	
chr1	1051596	1061757	1051821	1060385	+	EFG9	Cre01.g006150.t1.1		1051596,1052084,1052548,1053053,1053463,1054172,1054650,1055004,1055470,1055957,1056386,1058137,1058396,1058774,1059210,1059508,1060319	1051875,1052233,1052646,1053114,1053592,1054267,1054711,1055133,1055613,1055984,1056462,1058191,1058554,1058896,1059325,1059681,1061757	Similar to peptide-chain release factor RF3, prokaryotic type; Arabidopsis ortholog targeted to chloroplast; binds GTP
chr1	1063476	1068097	1063507	1068026	+	CSB4	Cre01.g006202.t1.1		1063476,1065751,1067081,1067689,1067915	1064071,1066833,1067557,1067799,1068097	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	1088530	1090755	1089014	1089957	-	Cre01.g006250.t1.2	Cre01.g006250.t1.2		1089914,1089336,1088530	1090755,1089607,1089239	
chr1	1091165	1094835	1093962	1094580	-	Cre01.g006301.t1.1	Cre01.g006301.t1.1		1094772,1094524,1094107,1091165	1094835,1094604,1094197,1093986	
chr1	1094900	1099485	1095288	1098978	-	Cre01.g006352.t1.1	Cre01.g006352.t1.1		1098970,1098658,1097516,1096806,1096077,1095540,1094900	1099485,1098750,1098348,1097410,1096665,1095973,1095288	
chr1	1098270	1101865	1101022	1101603	-	Cre01.g006402.t1.1	Cre01.g006402.t1.1		1101587,1098270	1101865,1101540	
chr1	1116189	1119387	1116205	1118763	+	Cre01.g006450.t2.1	Cre01.g006450.t2.1		1116189,1117689	1117477,1119387	
chr1	1116176	1118197	1116205	1118165	+	Cre01.g006450.t1.2	Cre01.g006450.t1.2		1116176,1117689,1118122	1117477,1118059,1118197	
chr1	1119870	1123965	1120235	1123514	-	Cre01.g006500.t1.1	Cre01.g006500.t1.1		1123506,1121093,1120748,1120534,1119870	1123965,1123427,1121019,1120592,1120279	
chr1	1124250	1125265	1124517	1125179	-	Cre01.g006550.t1.1	Cre01.g006550.t1.1		1125176,1124250	1125265,1124997	
chr1	1125426	1129607	1126061	1129428	+	Cre01.g006576.t1.1	Cre01.g006576.t1.1		1125426,1126258	1126068,1129607	
chr1	1134976	1139232	1135084	1138457	+	Cre01.g006600.t1.2	Cre01.g006600.t1.2		1134976,1138457	1137743,1139232	
chr1	1139570	1141435	1139673	1141350	-	Cre01.g006614.t1.1	Cre01.g006614.t1.1		1141308,1139570	1141435,1141239	
chr1	1294440	1296655	1295982	1296604	-	Cre01.g006628.t2.1	Cre01.g006628.t2.1		1296303,1294440	1296655,1296038	
chr1	1294330	1296655	1295982	1296604	-	Cre01.g006628.t1.1	Cre01.g006628.t1.1		1296303,1294330	1296655,1296038	
chr1	1305750	1306835	1306149	1306549	-	Cre01.g006642.t1.1	Cre01.g006642.t1.1		1305750	1306835	
chr1	1308030	1308705	1308247	1308620	-	Cre01.g006656.t1.1	Cre01.g006656.t1.1		1308030	1308705	
chr1	1314166	1319626	1314700	1318939	+	Cre01.g006670.t1.1	Cre01.g006670.t1.1		1314166,1315153,1317025,1318629,1318865	1314983,1315587,1317987,1318670,1319626	
chr1	1331476	1336502	1332442	1335432	+	Cre01.g006700.t1.2	Cre01.g006700.t1.2		1331476,1332280,1335135,1335427	1331822,1333702,1335228,1336502	
chr1	1337069	1340025	1337786	1339770	-	Cre01.g006733.t1.1	Cre01.g006733.t1.1		1339660,1338771,1338429,1337069	1340025,1338837,1338527,1337819	
chr1	1344580	1348695	1344832	1348019	-	Cre01.g006766.t1.1	Cre01.g006766.t1.1		1346507,1345903,1345479,1344580	1348695,1346224,1345640,1344915	
chr1	1355519	1365287	1356018	1365062	-	PIGA	Cre01.g006800.t1.1		1365019,1364320,1364093,1363617,1363355,1363001,1362430,1362018,1361635,1357653,1357285,1356933,1356581,1355519	1365287,1364399,1364158,1363739,1363411,1363063,1362550,1362133,1361739,1357730,1357401,1356986,1356750,1356322	UDP-Glycosyltransferase  (PIG-A); involved in first step of GPI anchor biosynthesis
chr1	1365381	1367300	1365470	1366164	+	Cre01.g006850.t1.2	Cre01.g006850.t1.2		1365381,1365728,1365904	1365561,1365784,1367300	
chr1	1367552	1369417	1368275	1369011	-	Cre01.g006876.t1.1	Cre01.g006876.t1.1		1368854,1367552	1369417,1368340	
chr1	1369582	1389407	1370538	1388650	-	Cre01.g006900.t1.1	Cre01.g006900.t1.1		1389022,1388236,1387980,1387367,1387039,1386987,1386668,1386324,1386024,1385593,1385181,1384901,1384622,1384445,1384112,1383910,1383593,1383372,1382489,1382269,1381906,1381602,1381310,1381016,1380722,1380265,1380071,1379813,1379449,1379248,1379019,1378740,1378566,1378356,1378203,1377779,1377589,1377285,1376670,1376385,1375930,1375472,1375162,1374938,1374392,1374033,1373428,1373207,1372953,1372660,1372158,1371710,1371490,1371061,1370750,1369582	1389407,1388865,1388162,1387801,1387197,1386997,1386812,1386477,1386100,1385760,1385319,1385062,1384700,1384486,1384252,1383915,1383724,1383410,1382905,1382274,1382094,1381668,1381425,1381021,1380876,1380351,1380143,1379818,1379589,1379301,1379024,1378806,1378633,1378409,1378208,1378047,1377627,1377435,1376882,1376451,1376108,1375626,1375234,1374943,1374660,1374150,1373496,1373212,1373087,1372725,1372459,1371947,1371508,1371283,1370755,1370538	
chr1	1369582	1389407	1370538	1388650	-	Cre01.g006900.t2.1	Cre01.g006900.t2.1		1389022,1388236,1387980,1387367,1387039,1386987,1386668,1386324,1386024,1385593,1385181,1384901,1384622,1384445,1384112,1383910,1383593,1383372,1382489,1382269,1381906,1381602,1381310,1381016,1380722,1380265,1380071,1379813,1379488,1379248,1378740,1378566,1378356,1378203,1377779,1377589,1377285,1376670,1376385,1375930,1375472,1375162,1374938,1374392,1374033,1373428,1373207,1372953,1372660,1372158,1371710,1371490,1371061,1370750,1369582	1389407,1388865,1388162,1387801,1387197,1386997,1386812,1386477,1386100,1385760,1385319,1385062,1384700,1384486,1384252,1383915,1383724,1383410,1382905,1382274,1382094,1381668,1381425,1381021,1380876,1380351,1380143,1379818,1379589,1379301,1378806,1378633,1378409,1378208,1378047,1377627,1377435,1376882,1376451,1376108,1375626,1375234,1374943,1374660,1374150,1373496,1373212,1373087,1372725,1372459,1371947,1371508,1371283,1370755,1370538	
chr1	1390088	1395999	1390370	1395543	+	FBA1	Cre01.g006950.t1.1		1390088,1390363,1390573,1390781,1391118,1391586,1391903,1392309,1392918,1393238,1393637,1394016,1394277,1394614,1394933,1395199,1395417	1390205,1390394,1390650,1390846,1391226,1391651,1391973,1392382,1392969,1393309,1393669,1394084,1394349,1394756,1395013,1395237,1395999	Aldehyde-lyase (EC 4.1.2.13); may be plastidic based on N-terminal extension, but greater sequence similarity to cytosolic forms; glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate; found in the flagellar proteome [PMID: 15998802]
chr1	1390088	1396147	1390370	1395543	+	FBA1	Cre01.g006950.t2.1		1390088,1390363,1390573,1390781,1391118,1391586,1391903,1392309,1392918,1393238,1393637,1394016,1394277,1394614,1394933,1395199,1395417	1390205,1390394,1390650,1390846,1391226,1391651,1391973,1392382,1392969,1393309,1393669,1394084,1394349,1394756,1395013,1395237,1396147	Aldehyde-lyase (EC 4.1.2.13); may be plastidic based on N-terminal extension, but greater sequence similarity to cytosolic forms; glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate; found in the flagellar proteome [PMID: 15998802]
chr1	1396478	1405374	1396700	1404372	+	Cre01.g007000.t1.2	Cre01.g007000.t1.2		1396478,1397222,1397535,1397706,1398080,1398358,1398833,1399248,1399550,1400380,1400685,1401032,1401240,1401592,1401857,1402255,1402719,1403071,1403377,1403817,1404279	1396817,1397323,1397570,1397820,1398111,1398464,1398881,1399304,1399736,1400477,1400747,1401073,1401365,1401663,1401974,1402422,1402844,1403176,1403489,1403863,1405374	
chr1	1405738	1408463	1405887	1406960	+	CPLD11	Cre01.g007050.t1.2		1405738,1406138,1406534,1406837	1406047,1406317,1406643,1408463	similar to hypothetical protein from cyanobacteria and plants
chr1	1410568	1413489	1411051	1413198	+	RPL40	Cre01.g007051.t1.2		1410568,1411034,1411353,1412557,1412925,1413195	1410950,1411154,1411439,1412659,1413015,1413489	cytosolic 60S large ribosomal subunit; ubiquitin-2 like RAD60 N-terminal domain
chr1	1413508	1420007	1414452	1419781	-	Cre01.g007100.t1.1	Cre01.g007100.t1.1		1419259,1418902,1413508	1420007,1419048,1418727	
chr1	1420137	1426409	1420329	1425980	+	Cre01.g007150.t1.1	Cre01.g007150.t1.1		1420137,1420800,1421253,1421761,1422083,1422603,1422846,1423731,1424253,1425096,1425438,1425815	1420437,1420850,1421336,1421858,1422274,1422681,1423199,1423853,1424726,1425170,1425569,1426409	
chr1	1426468	1432253	1426876	1430911	+	Cre01.g007200.t1.2	Cre01.g007200.t1.2		1426468,1427125,1427469,1427941,1428453,1429000,1429550,1429964	1426966,1427276,1427582,1428100,1428620,1429118,1429680,1432253	
chr1	1433282	1440877	1434118	1439647	-	Cre01.g007251.t1.1	Cre01.g007251.t1.1		1440148,1439574,1437577,1433282	1440877,1439733,1439370,1437399	null-allele mutant was isolated (PMID 29743196)
chr1	1441830	1446597	1442540	1446302	-	Cre01.g007300.t1.2	Cre01.g007300.t1.2		1446134,1445876,1445672,1445300,1444977,1444489,1443969,1443376,1443051,1441830	1446597,1445923,1445715,1445465,1445123,1444681,1444299,1443430,1443133,1442775	
chr1	1446867	1449527	1447631	1449304	-	MOT42	Cre01.g007350.t1.2		1449244,1448781,1448439,1446867	1449527,1449047,1448590,1448322	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr1	1450874	1454177	1452245	1453632	-	Cre01.g007400.t1.1	Cre01.g007400.t1.1		1453952,1453250,1450874	1454177,1453724,1453057	
chr1	1454468	1458249	1454899	1457679	+	Cre01.g007450.t1.1	Cre01.g007450.t1.1		1454468,1455200,1455511,1455778,1456086,1456325,1456635	1455026,1455281,1455547,1455838,1456213,1456375,1458249	
chr1	1458851	1470637	1459305	1470428	-	NSS1	Cre01.g007500.t2.1		1470398,1470268,1469975,1469453,1468948,1468477,1468099,1467731,1467497,1467085,1466734,1466414,1466084,1465733,1465423,1465047,1464675,1464272,1463584,1463231,1462915,1462052,1461515,1460525,1458851	1470637,1470306,1469993,1469568,1469083,1468556,1468188,1467779,1467549,1467174,1466853,1466509,1466155,1465783,1465560,1465154,1464713,1464349,1463703,1463315,1463017,1462158,1461642,1461250,1460376	Sodium:solute symporter, possibly a high-affinity choline or Na+/proline symporter
chr1	1458382	1470637	1459305	1470428	-	NSS1	Cre01.g007500.t1.1		1470398,1470268,1469975,1469453,1468948,1468477,1468099,1467731,1467497,1467085,1466734,1466414,1466084,1465733,1465423,1465047,1464675,1464272,1463584,1463231,1462915,1462052,1461515,1460525,1458382	1470637,1470306,1469993,1469568,1469083,1468556,1468188,1467779,1467549,1467174,1466853,1466509,1466155,1465783,1465560,1465154,1464713,1464349,1463703,1463315,1463017,1462158,1461642,1461250,1460376	Sodium:solute symporter, possibly a high-affinity choline or Na+/proline symporter
chr1	1471128	1477319	1471249	1476766	+	Cre01.g007550.t1.1	Cre01.g007550.t1.1		1471128,1471564,1472082,1472730,1472892,1473404,1473776,1474061,1474417,1474848,1475193,1475684,1476095,1476441	1471383,1471771,1472150,1472769,1473108,1473482,1473844,1474140,1474475,1474906,1475288,1475826,1476190,1477319	
chr1	1477328	1482947	1477829	1482759	-	Cre01.g007600.t1.1	Cre01.g007600.t1.1		1482496,1481833,1481378,1481144,1480564,1478888,1478609,1478359,1477328	1482947,1481870,1481485,1481213,1480612,1478950,1478674,1478433,1477880	
chr1	1477328	1482810	1477829	1482759	-	Cre01.g007600.t2.1	Cre01.g007600.t2.1		1482496,1481833,1481378,1481144,1480564,1478888,1478609,1478359,1477328	1482810,1481870,1481485,1481213,1480612,1478950,1478674,1478433,1477880	
chr1	1483208	1491113	1483306	1490594	+	PUS10	Cre01.g007651.t1.1		1483208,1483709,1484504,1485291,1485599,1486036,1486453,1486945,1487404,1488243,1488693,1489508,1489902,1490318	1483405,1484266,1485055,1485357,1485648,1486284,1486545,1487070,1487783,1488421,1488910,1489656,1490211,1491113	
chr1	1491241	1499953	1491836	1499878	-	Cre01.g007700.t1.1	Cre01.g007700.t1.1		1499819,1499630,1499289,1498919,1498441,1497902,1497534,1496929,1495732,1495226,1494799,1494197,1493886,1493420,1493092,1492701,1492161,1491241	1499953,1499671,1499311,1499016,1498588,1498005,1497656,1497055,1495897,1495325,1494927,1494250,1493978,1493516,1493165,1492842,1492331,1491940	
chr1	1500488	1508629	1500903	1506769	+	FBT1	Cre01.g007737.t1.1		1500488,1501446,1502081,1502398,1503028,1503510,1503909,1504629,1505081,1505655,1506037,1506523	1501234,1501531,1502208,1502554,1503117,1503615,1504063,1504769,1505227,1505723,1506162,1508629	Belongs to BT1-family of transporters (also known as FBT) involved in folate/pteridine transport (PMID: 1616253); May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	1508635	1513187	1509165	1512636	-	Cre01.g007774.t1.1	Cre01.g007774.t1.1		1513097,1512231,1511646,1511072,1508635	1513187,1512655,1511835,1511183,1510663	
chr1	1513242	1520277	1513970	1519898	-	Cre01.g007811.t1.1	Cre01.g007811.t1.1		1518916,1518495,1517957,1517556,1516944,1516288,1515857,1515442,1514820,1514468,1513242	1520277,1518616,1518145,1517685,1517077,1516392,1515961,1515500,1514922,1514626,1514177	
chr1	1520328	1522685	1520935	1522552	-	TEF29	Cre01.g007850.t1.2		1522435,1522217,1521844,1520328	1522685,1522315,1521939,1521073	Protein with unknown function, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 177818]
chr1	1522808	1533339	1522916	1532217	+	Cre01.g007901.t1.1	Cre01.g007901.t1.1		1522808,1523486,1524157,1524592,1525467,1525862,1526204,1526597,1527917,1528342,1530449,1530941,1531336,1531788	1523078,1523559,1524228,1524703,1525565,1525944,1526258,1527517,1528079,1528520,1530533,1530996,1531458,1533339	
chr1	1523658	1533339	1524013	1532217	+	Cre01.g007901.t3.1	Cre01.g007901.t3.1		1523658,1524157,1524592,1525467,1525862,1526204,1526597,1527917,1528342,1530449,1530941,1531336,1531788	1524021,1524228,1524703,1525565,1525944,1526258,1527517,1528079,1528520,1530533,1530996,1531458,1533339	
chr1	1522808	1523609	1522916	1523564	+	Cre01.g007901.t2.1	Cre01.g007901.t2.1		1522808,1523486	1523078,1523609	
chr1	1533342	1539057	1533967	1538402	-	CYP55B1	Cre01.g007950.t1.1		1538595,1538392,1538017,1537519,1537245,1536585,1536190,1535956,1535553,1534982,1534560,1533342	1539057,1538489,1538183,1537631,1537305,1536674,1536330,1536018,1535681,1535110,1534673,1534153	
chr1	1539112	1544947	1539560	1544791	-	Cre01.g008000.t1.2	Cre01.g008000.t1.2		1544518,1543847,1543550,1543012,1542584,1542184,1541741,1541297,1540861,1540551,1539787,1539112	1544947,1543952,1543655,1543111,1542700,1542252,1541794,1541386,1540904,1540719,1539920,1539560	
chr1	1545078	1550609	1545108	1549876	+	Cre01.g008051.t1.1	Cre01.g008051.t1.1		1545078,1545607,1546039,1546564,1546895,1547276,1547697,1548425,1548711,1549318,1549737	1545320,1545763,1546136,1546615,1546963,1547358,1547790,1548483,1548838,1549420,1550609	May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	1551623	1561025	1554538	1559730	-	Cre01.g008100.t1.2	Cre01.g008100.t1.2		1560264,1559667,1559340,1558932,1558566,1557646,1556200,1555453,1551623	1561025,1559747,1559471,1559005,1558631,1558127,1557312,1555940,1555264	
chr1	1561874	1574465	1562505	1574354	-	RPK1	Cre01.g008150.t1.1		1574201,1574033,1572942,1572243,1571691,1571388,1570991,1569646,1569079,1566809,1566415,1565910,1565377,1564675,1564241,1563786,1562923,1561874	1574465,1574118,1573813,1572578,1571762,1571611,1571113,1570769,1569394,1568893,1566639,1566119,1565723,1564774,1564372,1563906,1563008,1562598	
chr1	1574638	1581235	1575179	1581140	-	Cre01.g008200.t1.1	Cre01.g008200.t1.1		1581014,1580494,1579294,1578633,1578253,1577099,1576446,1576114,1574638	1581235,1580820,1579950,1578749,1578455,1578143,1576526,1576355,1575249	
chr1	1582006	1588736	1582778	1586419	+	Cre01.g008250.t1.2	Cre01.g008250.t1.2		1582006,1585073	1584816,1588736	
chr1	1589634	1592985	1591094	1592358	-	Cre01.g008300.t1.1	Cre01.g008300.t1.1		1592709,1591889,1589634	1592985,1592429,1591744	
chr1	1589634	1592985	1591094	1592358	-	Cre01.g008300.t2.1	Cre01.g008300.t2.1		1592548,1591889,1589634	1592985,1592429,1591744	
chr1	1593106	1597097	1593741	1595504	+	Cre01.g008350.t1.1	Cre01.g008350.t1.1		1593106,1593733,1594710	1593449,1594552,1597097	
chr1	1598346	1606788	1598814	1606400	+	Cre01.g008402.t1.1	Cre01.g008402.t1.1		1598346,1599040,1599480,1601245,1603124,1603568,1604360,1605144,1605653,1606255	1598915,1599110,1601170,1602890,1603480,1604207,1604926,1605489,1605899,1606788	
chr1	1609640	1617555	1610942	1617317	-	Cre01.g008450.t1.2	Cre01.g008450.t1.2		1617153,1616751,1616038,1615540,1615121,1614534,1614009,1613602,1613208,1612802,1612109,1611665,1609640	1617555,1616895,1616118,1615623,1615255,1614647,1614134,1613637,1613273,1612909,1612225,1611756,1611318	ts-lethal mutation block is S/M (PMID 29743196)
chr1	1617656	1624117	1617749	1623351	+	Cre01.g008500.t1.2	Cre01.g008500.t1.2		1617656,1618340,1618826,1619331,1619759,1620796,1621148,1621701,1621993,1622499,1622859,1623204	1618023,1618452,1619047,1619432,1619896,1620904,1621338,1621781,1622112,1622597,1622933,1624117	
chr1	1624776	1632086	1625247	1630763	+	Cre01.g008550.t1.1	Cre01.g008550.t1.1		1624776,1625565,1626123,1626521,1626877,1627283,1627753,1628201,1628749,1629263,1629774,1630239,1630595	1625269,1625843,1626205,1626679,1626979,1627445,1627852,1628320,1628912,1629392,1629866,1630388,1632086	
chr1	1632336	1642687	1632426	1642363	+	Cre01.g008600.t1.1	Cre01.g008600.t1.1		1632336,1633028,1633377,1633964,1634777,1635175,1635584,1635913,1636292,1636721,1637040,1637469,1637820,1640166,1641198,1642254	1632706,1633065,1633636,1634417,1634923,1635252,1635621,1635973,1636374,1636802,1637132,1637598,1639425,1641057,1641754,1642687	null-allele mutant was isolated (PMID 29743196)
chr1	1642756	1654034	1643155	1652039	+	CDK1	Cre01.g008650.t1.1		1642756,1643635,1644013,1644360,1644725,1645294,1646015,1646401,1646853	1643161,1643674,1644125,1644560,1645003,1645702,1646116,1646664,1654034	null-allele mutant was isolated (PMID 29743196)
chr1	1654166	1657157	1654288	1656697	+	Cre01.g008700.t1.2	Cre01.g008700.t1.2		1654166,1654471,1654877,1655360,1656460	1654373,1654545,1654944,1655953,1657157	
chr1	1657160	1661965	1657774	1661535	-	Cre01.g008750.t1.2	Cre01.g008750.t1.2		1661255,1660875,1660367,1659316,1658807,1657160	1661965,1661059,1660516,1660129,1658910,1658404	
chr1	1662646	1668430	1662978	1665814	+	Cre01.g008800.t1.1	Cre01.g008800.t1.1		1662646,1663109,1663444	1663032,1663294,1668430	
chr1	1668440	1683825	1669275	1683528	-	HLM2	Cre01.g008850.t1.1		1681372,1676653,1676220,1675669,1674699,1674152,1673633,1672203,1671632,1668440	1683825,1680992,1676377,1675977,1675508,1674358,1674007,1673372,1671958,1671408	
chr1	1683926	1686617	1683967	1686361	+	Cre01.g008891.t1.2	Cre01.g008891.t1.2		1683926,1684435,1684936,1685429,1685869	1684207,1684608,1685196,1685581,1686617	
chr1	1686710	1690115	1687178	1689954	-	Cre01.g008900.t1.2	Cre01.g008900.t1.2		1689627,1689034,1688638,1688345,1687948,1686710	1690115,1689147,1688751,1688416,1688115,1687727	null-allele mutant was isolated (PMID 29743196)
chr1	1693750	1696515	1694680	1695771	-	Cre01.g008950.t1.2	Cre01.g008950.t1.2		1695620,1693750	1696515,1695180	
chr1	1693750	1695855	1694680	1695494	-	Cre01.g008950.t2.1	Cre01.g008950.t2.1		1695484,1693750	1695855,1695180	
chr1	1696066	1698453	1697044	1697877	+	Cre01.g008976.t1.1	Cre01.g008976.t1.1		1696066,1697009,1697433,1697877	1696565,1697200,1697585,1698453	
chr1	1698720	1700625	1699211	1700599	-	Cre01.g009000.t1.1	Cre01.g009000.t1.1		1700377,1699980,1698720	1700625,1700147,1699763	
chr1	1700677	1702525	1701574	1702421	-	Cre01.g009025.t1.1	Cre01.g009025.t1.1		1700677	1702525	
chr1	1702680	1704245	1702702	1704069	-	Cre01.g009050.t1.2	Cre01.g009050.t1.2		1703775,1703275,1702680	1704245,1703388,1702909	
chr1	1704586	1709250	1704935	1707664	+	Cre01.g009101.t1.1	Cre01.g009101.t1.1		1704586,1705320,1705661,1705990,1706453,1706835,1707073	1705191,1705461,1705775,1706226,1706607,1706913,1709250	
chr1	1709325	1711085	1709545	1710970	-	Cre01.g009150.t1.1	Cre01.g009150.t1.1		1710781,1710176,1709325	1711085,1710452,1709826	
chr1	1711138	1713965	1711417	1713765	-	Cre01.g009200.t1.2	Cre01.g009200.t1.2		1713577,1713230,1712887,1712327,1711138	1713965,1713365,1713027,1712508,1712141	
chr1	1714086	1725107	1714210	1724575	+	TOP2	Cre01.g009250.t1.1		1714086,1714324,1714849,1715083,1715384,1715813,1716228,1716451,1716718,1717000,1717353,1717808,1718161,1718598,1718991,1719365,1719976,1720278,1720622,1721007,1721384,1721707,1722089,1722489,1722717,1723591,1723841,1724108,1724374	1714258,1714647,1714986,1715208,1715554,1715884,1716311,1716524,1716841,1717177,1717603,1717978,1718350,1718740,1719116,1719654,1720086,1720407,1720720,1721160,1721508,1721868,1722319,1722575,1723464,1723706,1723925,1724229,1725107	Similar to DNA topoisomerase II in Arabidopsis, TOP2 or AT3G23890. ts-lethal mutations block in S/M (PMID 25336509)
chr1	1725505	1739716	1725802	1738812	+	Cre01.g009300.t1.1	Cre01.g009300.t1.1		1725505,1725979,1726140,1726576,1727099,1727428,1728427,1729286,1729645,1730210,1730450,1730917,1731296,1731800,1732334,1732920,1733378,1733770,1734271,1734648,1735075,1735332,1736078,1737953,1738521	1725882,1726066,1726184,1726758,1727186,1727582,1728582,1729449,1729825,1730326,1730537,1731023,1731370,1732177,1732606,1733081,1733558,1733900,1734384,1734797,1735131,1735861,1736189,1738120,1739716	
chr1	1739718	1742894	1739901	1742594	-	Cre01.g009325.t1.1	Cre01.g009325.t1.1		1742489,1742348,1741780,1741259,1740855,1740515,1739718	1742894,1742418,1742156,1741704,1740885,1740714,1740270	
chr1	1743156	1748134	1744192	1748106	-	AIH2	Cre01.g009350.t1.2		1748036,1747690,1747290,1746984,1746638,1746200,1745814,1745373,1744877,1744442,1743156	1748134,1747796,1747442,1747082,1746745,1746321,1745958,1745531,1745062,1744551,1744226	converts agmatin to N-carbamoyl-putrescine; involved in agmatine pathway of polyamine (putrescine) biosynthesis; found in soluble mitochondrial proteome
chr1	1748305	1759279	1748885	1757856	+	NSS2	Cre01.g009400.t1.2		1748305,1748829,1749376,1749666,1749975,1750388,1750771,1751070,1751654,1752232,1752598,1753044,1753374,1753667,1754179,1754501,1754940,1755252,1755707,1756163,1756438,1756756,1757135,1757556	1748473,1748895,1749446,1749785,1750048,1750477,1750828,1751159,1751702,1752285,1752686,1753163,1753500,1753758,1754241,1754575,1755047,1755368,1755781,1756292,1756537,1756862,1757262,1759279	Sodium:solute symporter, possibly a high-affinity choline or Na+/proline symporter
chr1	1759435	1763016	1759468	1762225	+	DNJ22	Cre01.g009450.t1.1		1759435,1759668,1760154,1760514,1761193,1761462,1761940	1759589,1759774,1760255,1760600,1761282,1761782,1763016	DnaJ-like protein; contains N-terminal J-domain (pfam226)
chr1	1763026	1771764	1764491	1771397	-	CDPK3	Cre01.g009500.t1.2		1771352,1770777,1770234,1769790,1769352,1768945,1768346,1767960,1767425,1767113,1766593,1765880,1765553,1763026	1771764,1770887,1770406,1769866,1769475,1769087,1768479,1768067,1767482,1767213,1766751,1765992,1765658,1765334	
chr1	1772265	1777666	1772487	1776246	+	Cre01.g009550.t1.1	Cre01.g009550.t1.1		1772265,1772677,1773285,1773655,1774040,1774435,1774914	1772517,1773068,1773365,1773838,1774093,1774569,1777666	Related to GCN5
chr1	1777745	1784462	1778202	1783967	+	Cre01.g009575.t1.1	Cre01.g009575.t1.1		1777745,1778149,1782760,1783199,1783634	1777875,1782608,1782988,1783438,1784462	
chr1	1784625	1786206	1785169	1786183	+	Cre01.g009601.t1.1	Cre01.g009601.t1.1		1784625,1785124,1785411,1785771,1785966,1786183	1785008,1785272,1785482,1785885,1785981,1786206	
chr1	1784625	1786206	1785169	1786183	+	Cre01.g009601.t2.1	Cre01.g009601.t2.1		1784625,1785124,1785411,1785761,1785966,1786183	1785008,1785214,1785482,1785885,1785981,1786206	
chr1	1786295	1794466	1787332	1793132	+	BUG25	Cre01.g009650.t1.2		1786295,1786619,1787248,1791818,1792289,1792793	1786340,1786743,1791579,1792046,1792528,1794466	Basal body protein of unknown function, found in basal body proteome [PMID: 15964273]. Transcript upregulated during flagellar regeneration.
chr1	1794515	1796486	1794541	1794716	+	Cre01.g009676.t1.1	Cre01.g009676.t1.1		1794515	1796486	
chr1	1796894	1809334	1797150	1809116	-	Cre01.g009700.t1.1	Cre01.g009700.t1.1		1808933,1808661,1808201,1807910,1807441,1807047,1806649,1806377,1806074,1805754,1805387,1805043,1804632,1804414,1804026,1803559,1803150,1802781,1802348,1802021,1801657,1799133,1798313,1797857,1797386,1796894	1809334,1808800,1808414,1808026,1807534,1807165,1806807,1806424,1806172,1805855,1805515,1805201,1804817,1804491,1804187,1803714,1803248,1802912,1802431,1802137,1801842,1801515,1798996,1798107,1797661,1797249	
chr1	1809399	1815744	1809731	1815715	-	Cre01.g009731.t1.2	Cre01.g009731.t1.2		1815578,1814674,1813149,1812791,1811677,1809399	1815744,1815513,1814524,1812906,1812450,1811114	
chr1	1815799	1821414	1816874	1821162	-	Cre01.g009765.t1.1	Cre01.g009765.t1.1		1818722,1817172,1815799	1821414,1818541,1816997	
chr1	1821959	1824924	1822702	1824483	-	FAP289	Cre01.g009800.t1.2		1824720,1824352,1823801,1821959	1824924,1824491,1824158,1823557	Found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr1	1825055	1830816	1825293	1829928	+	Cre01.g009850.t1.2	Cre01.g009850.t1.2		1825055,1825720,1825998,1826294,1826686	1825341,1825827,1826103,1826440,1830816	
chr1	1830819	1835434	1832352	1835141	-	CDJ3	Cre01.g009900.t1.1		1834988,1834637,1834141,1833757,1833323,1832945,1830819	1835434,1834762,1834262,1833910,1833436,1833108,1832659	Contains N-terminal J-domain (pfam226) and Ferredoxin domain (COG1141); described in Henselmann and Schroda, Diploma thesis, University of Freiburg. Characterized by Dorn et al. 21 [PMID: 2113313]
chr1	1835572	1837944	1835951	1837801	-	NEP1	Cre01.g009950.t1.2		1837678,1837520,1837235,1836674,1836389,1835572	1837944,1837612,1837285,1836826,1836478,1836134	Involved in 4S ribosomal subunit biogenesis; seems to play a role in a methylation reaction in pre-rRNA processing (By similarity) [PMID: 11935223]
chr1	1838122	1842287	1838369	1841681	+	MAPK8	Cre01.g010000.t1.2		1838122,1838609,1838878,1839467,1839793,1840066,1840495,1840894,1841291,1841657	1838507,1838688,1839160,1839591,1839900,1840156,1840623,1841058,1841317,1842287	Mitogen-Activated Protein Kinase Homolog 8 (gI 11275338); Downstream kinase in the canonical MAP kinase pathway
chr1	1842335	1852794	1843172	1851660	+	Cre01.g010050.t1.1	Cre01.g010050.t1.1		1842335,1842923,1844207,1845237,1845663,1848742	1842569,1843966,1844938,1845511,1848524,1852794	
chr1	1853615	1857012	1854351	1856194	+	Cre01.g010100.t1.2	Cre01.g010100.t1.2		1853615,1854639,1855108,1855342	1854470,1854963,1855167,1857012	Related to GCN5
chr1	1857235	1863396	1857332	1860755	+	Cre01.g010150.t1.2	Cre01.g010150.t1.2		1857235,1857620,1858099,1858702,1859572,1860030	1857407,1857724,1858471,1859249,1859860,1863396	
chr1	1866485	1873868	1866686	1872874	+	Cre01.g010201.t1.1	Cre01.g010201.t1.1		1866485,1867140,1867763,1868440,1870450,1871067,1871677,1871944,1872475,1872874	1866926,1867338,1868031,1870407,1870735,1871156,1871772,1872130,1872662,1873868	
chr1	1877171	1895794	1878702	1895689	-	Cre01.g010250.t1.1	Cre01.g010250.t1.1		1895573,1895175,1894673,1892764,1892522,1892212,1891151,1890832,1890484,1890155,1889940,1889477,1888990,1888221,1887832,1887094,1886614,1886222,1885701,1885172,1884798,1881960,1881226,1880832,1880397,1879779,1879385,1878907,1877171	1895794,1895253,1894789,1892857,1892583,1892268,1891309,1890978,1890600,1890229,1890020,1889662,1889091,1888418,1887951,1887204,1886757,1886305,1885817,1885300,1884854,1884468,1881785,1881016,1880452,1879975,1879444,1879191,1878786	
chr1	1896131	1897708	1897381	1897622	-	Cre01.g010296.t1.1	Cre01.g010296.t1.1		1896131	1897708	
chr1	1899065	1902424	1900183	1902230	-	Cre01.g010300.t1.2	Cre01.g010300.t1.2		1902184,1901972,1901529,1901114,1900499,1899065	1902424,1902086,1901699,1901253,1900641,1900222	
chr1	1941585	1944578	1941671	1944002	+	LIPB	Cre01.g010350.t1.2		1941585,1941871,1942034,1942652,1944002	1941809,1941933,1942308,1943766,1944578	lipoate protein ligase, lipoate biosynthesis protein
chr1	1945728	1947403	1946512	1947373	-	FAP380	Cre01.g010400.t1.2		1947067,1946914,1945728	1947403,1946973,1946710	
chr1	1947892	1950454	1948450	1950399	-	Cre01.g010450.t1.2	Cre01.g010450.t1.2		1950277,1950071,1949682,1949143,1947892	1950454,1950125,1949738,1949244,1948633	
chr1	1950509	1952744	1951626	1952550	-	Cre01.g010500.t1.2	Cre01.g010500.t1.2		1952468,1952281,1951979,1950509	1952744,1952318,1952035,1951680	
chr1	1952845	1962656	1952938	1961265	+	HLD2	Cre01.g010550.t1.1		1952845,1953075,1953534,1954135,1954548,1955489,1956048,1956627,1958723,1959268,1960270,1961133	1953022,1953125,1953643,1954356,1954734,1955607,1956103,1956745,1958848,1959372,1960413,1962656	
chr1	1952845	1962656	1952938	1961265	+	HLD2	Cre01.g010550.t2.1		1952845,1953075,1953534,1954135,1954548,1955489,1956048,1956627,1958723,1959268,1960270,1961133	1953022,1953125,1953643,1954356,1954734,1955607,1956103,1956745,1958848,1959372,1960374,1962656	
chr1	1963405	1975736	1963499	1975492	+	Cre01.g010650.t1.2	Cre01.g010650.t1.2		1963405,1963797,1964199,1964555,1965113,1965764,1966319,1967882,1968296,1968698,1969174,1970372,1970873,1972806,1973362,1973964,1974919	1963676,1963848,1964252,1964922,1965450,1966085,1966659,1968032,1968358,1968819,1969960,1970473,1972440,1973172,1973801,1974639,1975736	
chr1	1975785	1979586	1976019	1978867	+	SYP2	Cre01.g010700.t1.2		1975785,1976109,1976225,1976623,1977024,1977488,1977867,1978376,1978687	1976031,1976156,1976368,1976796,1977120,1977639,1977959,1978420,1979586	Conserved Hypothetical Protein, Qa-SNARE, Late endosomes, vacuoles
chr1	1979645	1987306	1980103	1986049	+	Cre01.g010750.t1.2	Cre01.g010750.t1.2		1979645,1983157,1983617,1983920,1985666	1982914,1983249,1983679,1985012,1987306	
chr1	1987309	1990854	1988151	1990743	-	Cre01.g010800.t1.1	Cre01.g010800.t1.1		1990728,1990107,1988570,1987309	1990854,1990475,1989649,1988319	
chr1	2000695	2005326	2001425	2004430	+	Cre01.g010816.t1.1	Cre01.g010816.t1.1		2000695,2001557,2001689,2002041,2002540,2003081,2003607,2004323	2001491,2001597,2001794,2002160,2002743,2003147,2003774,2005326	
chr1	2005396	2013022	2005884	2011495	+	Cre01.g010832.t1.1	Cre01.g010832.t1.1		2005396,2006670,2006921,2007209,2007547,2007899,2008233,2008757,2009162,2009448,2009798,2010117,2010307,2010746,2011123	2006006,2006781,2006980,2007250,2007702,2007989,2008416,2008888,2009233,2009568,2009928,2010158,2010371,2010906,2013022	
chr1	2013249	2017605	2014030	2017355	-	Cre01.g010848.t1.1	Cre01.g010848.t1.1		2017268,2017023,2016473,2016090,2015792,2015308,2015033,2014420,2013249	2017605,2017118,2016563,2016136,2015863,2015385,2015072,2014556,2014129	
chr1	2017726	2025137	2018026	2024273	+	Cre01.g010864.t1.1	Cre01.g010864.t1.1		2017726,2018843,2020147,2020365,2020682,2021189,2021828,2022078,2022572,2022995,2023385,2023788,2024177	2018518,2019009,2020225,2020474,2020807,2021273,2021939,2022148,2022629,2023092,2023487,2023849,2025137	
chr1	2025200	2039185	2025940	2038951	-	Cre01.g010880.t1.1	Cre01.g010880.t1.1		2038813,2038431,2038062,2037586,2036600,2036148,2035531,2034417,2034063,2033690,2033338,2032773,2032320,2031840,2031274,2030820,2030322,2029727,2027908,2027008,2026657,2025200	2039185,2038485,2038114,2037882,2036686,2036267,2035671,2034517,2034165,2033775,2033400,2032970,2032483,2032011,2031352,2030892,2030386,2029828,2027983,2027153,2026731,2026288	May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	2039260	2042765	2040271	2042255	-	GAP3	Cre01.g010900.t1.2		2042234,2042033,2041488,2041143,2040714,2039260	2042765,2042083,2041862,2041295,2040968,2040541	Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehyde phosphate dehydrogenase subunit A); corresponds to G3PA_CHLRE; found in the flagellar proteome [PMID: 15998802]
chr1	2044636	2055151	2044790	2053546	+	Cre01.g010950.t1.1	Cre01.g010950.t1.1		2044636,2045062,2046138,2046904,2047480,2047901,2048394,2048950,2050239,2051064,2051431	2044877,2045225,2046186,2047012,2047606,2047949,2048570,2049846,2050847,2051201,2055151	
chr1	2057220	2059025	2057960	2058786	-	RPL6	Cre01.g011000.t1.2		2058721,2057220	2059025,2058567	Cytosolic 60S large ribosomal subunit protein L6
chr1	2062416	2063871	2062821	2063147	+	Cre01.g011050.t1.2	Cre01.g011050.t1.2		2062416,2062646,2062968	2062543,2062825,2063871	
chr1	2063910	2075095	2065348	2074859	-	Cre01.g011100.t1.2	Cre01.g011100.t1.2		2074439,2073341,2072630,2071959,2071379,2070971,2070617,2070344,2069964,2069589,2069032,2068654,2068522,2068131,2067674,2067312,2066730,2066419,2065946,2063910	2075095,2073459,2072696,2072083,2071436,2071044,2070716,2070445,2070061,2069691,2069109,2068812,2068557,2068250,2067771,2067404,2066907,2066502,2066076,2065430	Probably a squalene cyclase; similar to cycloartenol synthase; (S)-2,3-epoxysqualene mutase from Arabidopsis thaliana - possibly involved in sterol/ergosterol biosynthesis
chr1	2063910	2075095	2065348	2074859	-	Cre01.g011100.t2.1	Cre01.g011100.t2.1		2074439,2073341,2072630,2071959,2071379,2070971,2070617,2070344,2069964,2069589,2069032,2068654,2068131,2067674,2067312,2066730,2066419,2065946,2063910	2075095,2073459,2072696,2072083,2071436,2071044,2070716,2070445,2070061,2069691,2069109,2068812,2068250,2067771,2067404,2066907,2066502,2066076,2065430	Probably a squalene cyclase; similar to cycloartenol synthase; (S)-2,3-epoxysqualene mutase from Arabidopsis thaliana - possibly involved in sterol/ergosterol biosynthesis
chr1	2079236	2086983	2080238	2084201	+	Cre01.g011150.t1.1	Cre01.g011150.t1.1		2079236,2080230,2083639,2083979	2080011,2083339,2083720,2086983	
chr1	2087000	2089485	2087564	2089344	-	Cre01.g011200.t1.2	Cre01.g011200.t1.2		2089205,2088695,2088210,2087000	2089485,2088828,2088323,2087810	
chr1	2089616	2094030	2089799	2093886	+	Cre01.g011250.t1.1	Cre01.g011250.t1.1		2089616,2090034,2090460,2091031,2091341,2091817,2092321,2092710	2089934,2090246,2090849,2091076,2091503,2091934,2092440,2094030	
chr1	2094271	2099960	2094426	2099580	+	SCLP50	Cre01.g011300.t1.1		2094271,2095061,2095619,2096148,2096475,2097171,2097605,2097981,2098547,2098989,2099430	2094705,2095151,2095755,2096204,2096649,2097360,2097707,2098127,2098618,2099159,2099960	null-allele mutant was isolated (PMID 29743196)
chr1	2100016	2103391	2100171	2102868	+	Cre01.g011350.t1.2	Cre01.g011350.t1.2		2100016,2100907,2101245,2101747,2102180,2102722	2100314,2100988,2101396,2101831,2102279,2103391	
chr1	2103466	2105097	2103550	2104100	+	Cre01.g011376.t1.1	Cre01.g011376.t1.1		2103466,2103728,2104100	2103658,2103930,2105097	
chr1	2105249	2113315	2105540	2113195	-	Cre01.g011400.t1.1	Cre01.g011400.t1.1		2113099,2112870,2112583,2112243,2111738,2106317,2105249	2113315,2112983,2112802,2112430,2112055,2111498,2106187	
chr1	2105249	2113315	2105540	2113195	-	Cre01.g011400.t2.1	Cre01.g011400.t2.1		2113099,2112870,2112583,2112243,2111738,2106317,2105249	2113315,2112983,2112802,2112427,2112055,2111498,2106187	
chr1	2114111	2122165	2116511	2121917	-	Cre01.g011450.t1.1	Cre01.g011450.t1.1		2121896,2121614,2120827,2118538,2118140,2117769,2117334,2117101,2114111	2122165,2121758,2121484,2120476,2118414,2117886,2117500,2117170,2116853	
chr1	2122800	2126556	2123005	2125893	+	RPN11	Cre01.g011500.t1.2		2122800,2123333,2123759,2124074,2124595,2124897,2125284,2125824	2123141,2123510,2123840,2124250,2124647,2125034,2125383,2126556	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN11 (26S PROTEASOME-ASSOCIATED PAD1 HOMOLOG)
chr1	2126606	2132007	2127135	2131332	+	Cre01.g011550.t1.1	Cre01.g011550.t1.1		2126606,2127440,2127745,2128268,2130029	2127219,2127535,2127999,2129841,2132007	
chr1	2132466	2137707	2132803	2136399	+	Cre01.g011600.t1.2	Cre01.g011600.t1.2		2132466,2133216,2133611,2135036,2135388	2133095,2133407,2134857,2135233,2137707	
chr1	2137756	2142630	2138481	2140965	+	Cre01.g011630.t1.1	Cre01.g011630.t1.1		2137756,2138478,2138903,2139116,2139283,2139549,2139995,2140167,2140405,2140646,2140948	2138367,2138664,2138947,2139212,2139303,2139765,2140025,2140229,2140506,2140709,2142630	
chr1	2137756	2142630	2138481	2140965	+	Cre01.g011630.t2.1	Cre01.g011630.t2.1		2137756,2138478,2139116,2139283,2139549,2139995,2140167,2140405,2140646,2140948	2138367,2138664,2139212,2139303,2139765,2140025,2140229,2140506,2140709,2142630	
chr1	2143376	2147331	2143572	2146166	+	Cre01.g011660.t2.1	Cre01.g011660.t2.1		2143376,2143852,2144246,2144589,2144884,2145178,2145497,2145930,2146149	2143643,2143935,2144463,2144653,2145011,2145304,2145589,2145990,2147331	
chr1	2142686	2147331	2143572	2146166	+	Cre01.g011660.t1.1	Cre01.g011660.t1.1		2142686,2143424,2143852,2144246,2144589,2144884,2145178,2145497,2145930,2146149	2143315,2143643,2143935,2144463,2144653,2145011,2145304,2145589,2145990,2147331	
chr1	2147406	2154405	2147854	2154376	-	Cre01.g011750.t1.1	Cre01.g011750.t1.1		2154323,2153919,2153538,2152811,2152442,2151893,2151582,2151082,2150653,2150233,2149759,2148979,2148607,2148320,2147406	2154405,2154037,2153657,2153163,2152642,2151985,2151680,2151327,2150942,2150320,2149923,2149623,2148678,2148431,2148009	
chr1	2154460	2162875	2155130	2162084	-	Cre01.g011800.t1.1	Cre01.g011800.t1.1		2162667,2161883,2161542,2161222,2160883,2160386,2160018,2159364,2158722,2158576,2158159,2156459,2156168,2155963,2155741,2155401,2154460	2162875,2162310,2161727,2161299,2160985,2160567,2160101,2159622,2159216,2158622,2158279,2158013,2156333,2156037,2155797,2155601,2155313	
chr1	2163496	2172857	2164178	2171488	+	Cre01.g011850.t2.1	Cre01.g011850.t2.1		2163496,2164010,2164618,2164983,2165263,2165591,2166133,2166939,2167560,2168198,2168440,2168706,2170282,2170582,2170822,2171022,2171311	2163689,2164454,2164803,2165060,2165362,2165772,2166216,2167224,2168060,2168244,2168560,2170152,2170447,2170656,2170878,2171222,2172857	
chr1	2162976	2172857	2164178	2171488	+	Cre01.g011850.t1.1	Cre01.g011850.t1.1		2162976,2163648,2164006,2164618,2164983,2165263,2165591,2166133,2166939,2167560,2168198,2168440,2168706,2170282,2170582,2170822,2171022,2171311	2163333,2163689,2164454,2164803,2165060,2165362,2165772,2166216,2167224,2168060,2168244,2168560,2170152,2170447,2170656,2170878,2171222,2172857	
chr1	2173628	2182977	2174985	2182928	-	ARS7	Cre01.g011901.t1.1		2182079,2181736,2181474,2181182,2180990,2180690,2180308,2179828,2179499,2179131,2178917,2177775,2177534,2176424,2175980,2175442,2173628	2182977,2181895,2181537,2181248,2181061,2180799,2180443,2179987,2179562,2179236,2178974,2178748,2177653,2177432,2176223,2175577,2175132	
chr1	2183151	2191427	2183728	2191252	-	Cre01.g011950.t1.1	Cre01.g011950.t1.1		2191018,2187618,2187309,2184890,2184440,2183997,2183151	2191427,2190888,2187438,2187102,2184630,2184127,2183858	
chr1	2191568	2203219	2191761	2202596	+	Cre01.g012000.t1.1	Cre01.g012000.t1.1		2191568,2195538,2201616,2201913,2202430	2195353,2201384,2201770,2202073,2203219	null-allele passenger mutation was isolated (PMID 29743196)
chr1	2203358	2207939	2204005	2206902	+	NAR1.6	Cre01.g012050.t1.2		2203358,2204185,2204456,2204806,2205426,2205795,2206054,2206404,2206643	2204101,2204220,2204537,2205054,2205613,2205878,2206217,2206463,2207939	Formate/nitrite transporter, bacterial type (nirC); additional N-terminal sequence may target it to an organelle. AY612642 NCBI accession number NAR1.6 mRNA, complete cds
chr1	2207988	2214979	2208083	2213789	+	ARS4	Cre01.g012100.t1.1		2207988,2208298,2208993,2209453,2209721,2210030,2210321,2210537,2210976,2211436,2211641,2211951,2212184,2212783,2213085,2213436,2213756	2208158,2208753,2209164,2209516,2209787,2210101,2210430,2210672,2211135,2211499,2211746,2212008,2212438,2212963,2213220,2213543,2214979	
chr1	2215028	2220779	2215550	2220243	+	Cre01.g012126.t1.2	Cre01.g012126.t1.2		2215028,2215316,2215518,2215867,2216252,2216723,2217030,2217310,2217688,2217998,2218350,2218668,2218989,2219218,2219738,2220105	2215215,2215389,2215677,2215930,2216390,2216832,2217165,2217469,2217751,2218103,2218407,2218857,2219077,2219413,2219873,2220779	
chr1	2215028	2220779	2215674	2220243	+	Cre01.g012126.t2.1	Cre01.g012126.t2.1		2215028,2215316,2215518,2216252,2216723,2217030,2217310,2217688,2217998,2218350,2218668,2218989,2219218,2219738,2220105	2215215,2215389,2215721,2216390,2216832,2217165,2217469,2217751,2218103,2218407,2218857,2219077,2219413,2219873,2220779	
chr1	2220784	2225707	2221227	2225694	-	MSRA4	Cre01.g012150.t1.2		2225629,2225378,2224913,2224601,2224153,2223757,2223399,2223077,2222815,2222250,2221858,2221405,2220784	2225707,2225445,2224989,2224678,2224233,2223862,2223465,2223170,2222853,2222332,2221965,2221521,2221258	contains an N-terminal FKBP-type immunophilin domain and a C-terminalmethionine-S-sulfoxide reductase domain that catalyzes the thioredoxin-dependent reduction of L-methionine (S)-S-oxide in oxidized proteins
chr1	2225762	2227123	2226626	2226955	-	Cre01.g012175.t1.1	Cre01.g012175.t1.1		2226898,2225762	2227123,2226752	
chr1	2227218	2237669	2227519	2235209	+	Cre01.g012200.t1.1	Cre01.g012200.t1.1		2227218,2227771,2228525,2229098,2229999,2230550,2233195,2233519,2233905,2234099	2227558,2227882,2228587,2229240,2230138,2232893,2233301,2233565,2233930,2237669	null-allele mutant was isolated (PMID 29743196)
chr1	2227218	2237669	2227519	2235209	+	Cre01.g012200.t2.1	Cre01.g012200.t2.1		2227218,2227771,2228525,2229098,2229999,2230550,2233195,2233519,2233905,2234102	2227558,2227882,2228587,2229240,2230138,2232893,2233301,2233565,2233930,2237669	null-allele mutant was isolated (PMID 29743196)
chr1	2238497	2239237	2238784	2239184	-	Cre01.g012222.t1.1	Cre01.g012222.t1.1		2239181,2238497	2239237,2239018	
chr1	2239508	2242317	2239745	2241551	+	Cre01.g012244.t1.2	Cre01.g012244.t1.2		2239508,2240958,2241551	2240005,2241446,2242317	
chr1	2245518	2249047	2246393	2248854	-	Cre01.g012300.t1.1	Cre01.g012300.t1.1		2248742,2248539,2248359,2247880,2247424,2246808,2245518	2249047,2248642,2248430,2247975,2247579,2246882,2246528	
chr1	2249578	2257529	2249627	2257237	+	Cre01.g012350.t1.2	Cre01.g012350.t1.2		2249578,2249801,2250068,2250471,2250833,2252492,2252854,2253400,2254200,2255173,2255775,2256125	2249681,2249839,2250229,2250602,2251774,2252641,2253156,2254008,2254934,2255309,2255941,2257529	
chr1	2257532	2261767	2258045	2261738	-	Cre01.g012400.t1.2	Cre01.g012400.t1.2		2261570,2260941,2260445,2259842,2259597,2259358,2258976,2257532	2261767,2261121,2260617,2259901,2259636,2259401,2259149,2258681	
chr1	2263908	2289189	2264004	2288530	+	Cre01.g012450.t1.1	Cre01.g012450.t1.1		2263908,2264119,2264280,2264691,2265038,2265264,2265685,2265943,2267519,2268070,2268305,2270646,2271384,2271708,2273748,2274352,2275938,2276414,2276934,2277348,2277878,2278335,2278597,2279048,2279624,2279924,2280693,2281112,2282717,2283398,2283655,2286521,2287095,2287651,2287970,2288399	2264037,2264214,2264501,2264861,2265088,2265427,2265806,2267225,2267724,2268143,2270357,2271183,2271491,2273516,2274049,2275729,2276165,2276626,2277081,2277547,2278091,2278438,2278840,2279229,2279744,2280435,2280963,2282502,2283259,2283496,2286237,2286844,2287381,2287731,2288127,2289189	
chr1	2289192	2291906	2290113	2291730	-	Cre01.g012500.t1.2	Cre01.g012500.t1.2		2291601,2291461,2291153,2291014,2290346,2289192	2291906,2291523,2291343,2291076,2290448,2290182	
chr1	2294298	2299193	2295087	2298156	+	Cre01.g012550.t1.1	Cre01.g012550.t1.1		2294298,2296366	2296180,2299193	
chr1	2299248	2304617	2300232	2304305	-	PGM1	Cre01.g012600.t1.1		2304443,2304091,2303756,2303399,2303057,2302596,2302295,2302023,2301725,2301510,2301068,2300641,2299248	2304617,2304338,2303896,2303595,2303159,2302891,2302460,2302147,2301874,2301572,2301332,2300757,2300384	Converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose; the reaction mechanism involves phosphoryl transfer from a phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme
chr1	2304728	2317117	2305295	2315888	+	KCN9	Cre01.g012650.t1.1		2304728,2305185,2305498,2305993,2306281,2306504,2306811,2307231,2307637,2308038,2308361,2308610,2308943,2309677,2310176,2310603,2311009,2311353,2311626,2311785,2312179,2312851,2314053	2305074,2305316,2305829,2306088,2306327,2306612,2306937,2307343,2307849,2308176,2308429,2308768,2309543,2309919,2310303,2310753,2311133,2311460,2311675,2311868,2312647,2313892,2317117	part of a cluster of 4 related potassium channels
chr1	2317318	2326915	2317675	2326416	+	KCN6	Cre01.g012700.t1.2		2317318,2317952,2318317,2318819,2319093,2319369,2319640,2319921,2320310,2320585,2320803,2321128,2321522,2321888,2322172,2322388,2322603,2322835,2323103,2323355,2323661,2324322,2325072,2325472	2317774,2318113,2318525,2318917,2319245,2319495,2319777,2320108,2320448,2320662,2320952,2321371,2321629,2322015,2322261,2322448,2322691,2322978,2323152,2323438,2324126,2324949,2325341,2326915	part of a cluster of 4 related potassium channels
chr1	2327227	2339079	2327717	2337736	+	KCN7	Cre01.g012750.t1.1		2327227,2327964,2328773,2329383,2329814,2330151,2330445,2330823,2331131,2331505,2331729,2332075,2332466,2332922,2333290,2333729,2333889,2334117,2334475,2334866,2335194,2335500,2335868,2336249	2327795,2328533,2329074,2329532,2329949,2330263,2330661,2330873,2331217,2331580,2331880,2332315,2332713,2333102,2333522,2333778,2333972,2334330,2334753,2335027,2335367,2335758,2336092,2339079	part of a cluster of 4 related potassium channels
chr1	2339127	2342765	2339352	2342134	+	FAP230	Cre01.g012800.t1.1		2339127,2339575,2339954,2340193,2340601,2340855,2341261,2341661,2342096	2339361,2339805,2340056,2340371,2340690,2341090,2341512,2341866,2342765	Also found in basal body proteome as BUG19; Altered pI in DRC mutant axonemes; not conserved
chr1	2339127	2342554	2339352	2342134	+	FAP230	Cre01.g012800.t2.1		2339127,2339575,2339954,2340193,2340601,2340855,2341261,2341661,2342096	2339361,2339805,2340056,2340371,2340690,2341090,2341512,2341866,2342554	Also found in basal body proteome as BUG19; Altered pI in DRC mutant axonemes; not conserved
chr1	2342917	2353162	2343467	2352155	+	KCN8	Cre01.g012850.t1.2		2342917,2343423,2344115,2344661,2344902,2345041,2345368,2345702,2346095,2346391,2346658,2346885,2347302,2347818,2348159,2348493,2348842,2349037,2349233,2349889,2350215,2350767	2343189,2343923,2344449,2344766,2344945,2345170,2345480,2345915,2346145,2346477,2346733,2347036,2347548,2348050,2348339,2348725,2348891,2349120,2349713,2350050,2350668,2353162	part of a cluster of 4 related potassium channels
chr1	2353231	2359886	2354281	2359524	-	Cre01.g012900.t1.1	Cre01.g012900.t1.1		2359356,2358858,2358258,2357693,2357255,2356112,2355812,2355407,2354735,2353231	2359886,2359082,2358416,2357986,2357371,2357024,2355888,2355496,2354980,2354533	
chr1	2360837	2368003	2361327	2366424	+	Cre01.g012950.t1.1	Cre01.g012950.t1.1		2360837,2361655,2361998,2362299,2362652,2365332,2365682,2366240	2361347,2361757,2362069,2362457,2365168,2365412,2365896,2368003	
chr1	2360837	2368003	2361327	2366424	+	Cre01.g012950.t2.1	Cre01.g012950.t2.1		2360837,2361685,2361998,2362299,2362652,2365332,2365682,2366240	2361347,2361757,2362069,2362457,2365168,2365412,2365896,2368003	
chr1	2368041	2376176	2368473	2375958	-	Cre01.g013000.t1.1	Cre01.g013000.t1.1		2376145,2375493,2375204,2374875,2373971,2373115,2372505,2371718,2370740,2370186,2369778,2369356,2368041	2376176,2375974,2375293,2374993,2374567,2373290,2372785,2372238,2371517,2370542,2369841,2369539,2369044	
chr1	2376297	2383408	2376397	2382414	+	Cre01.g013050.t1.1	Cre01.g013050.t1.1		2376297,2376929,2377302,2377763,2378605,2378922,2379456,2379803,2380246,2380813,2381193,2381709,2382030	2376517,2377057,2377397,2378323,2378680,2379083,2379553,2379936,2380335,2380960,2381533,2381793,2383408	null-allele passenger mutation was isolated (PMID 29743196)
chr1	2388505	2393026	2390085	2392760	-	PRL10	Cre01.g013100.t1.1		2392696,2392014,2391649,2391170,2390879,2390587,2390280,2388505	2393026,2392325,2391841,2391224,2390941,2390691,2390343,2390102	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr1	2393134	2395546	2393767	2395461	-	CGLD35	Cre01.g013150.t1.2		2395450,2395225,2394919,2394590,2394275,2394031,2393134	2395546,2395318,2394974,2394599,2394326,2394081,2393826	
chr1	2395647	2397184	2396245	2396549	+	Cre01.g013200.t1.2	Cre01.g013200.t1.2		2395647	2397184	
chr1	2397267	2402196	2397609	2401381	-	Cre01.g013250.t1.1	Cre01.g013250.t1.1		2402082,2401784,2401529,2401371,2401155,2400714,2400501,2399935,2399554,2399037,2397267	2402196,2401976,2401587,2401422,2401228,2400900,2400586,2400145,2399701,2399212,2397737	
chr1	2402347	2408924	2402654	2408567	+	DEG10	Cre01.g013300.t1.1		2402347,2403727,2404177,2404562,2405164,2405819,2406222,2406632,2406952,2407296,2407613,2407939,2408398	2403458,2403862,2404298,2404712,2405303,2405947,2406276,2406720,2407052,2407446,2407663,2408060,2408924	DegP-type protease, probably mitochondrial; one PDZ domain
chr1	2409137	2411346	2409721	2411196	-	Cre01.g013350.t1.2	Cre01.g013350.t1.2		2411064,2410865,2410705,2410335,2409959,2409137	2411346,2410961,2410792,2410488,2410057,2409814	
chr1	2411477	2416856	2411629	2416761	-	PIGS	Cre01.g013400.t1.1		2416676,2416172,2415955,2415381,2414433,2413874,2413220,2412943,2412322,2411984,2411477	2416856,2416312,2416052,2415694,2414620,2414217,2413687,2413005,2412761,2412122,2411788	null-allele mutant was isolated (PMID 29743196)
chr1	2417017	2419927	2417176	2419235	+	Cre01.g013450.t1.2	Cre01.g013450.t1.2		2417017,2417617,2417878,2418150,2418531,2419037	2417402,2417693,2417980,2418292,2418722,2419927	
chr1	2421967	2426463	2422756	2425696	+	Cre01.g013500.t1.2	Cre01.g013500.t1.2		2421967,2422653,2423250,2423550,2423901,2424308,2424689,2424888,2425320,2425573	2422473,2422946,2423326,2423673,2424019,2424418,2424736,2424923,2425379,2426463	
chr1	2422767	2426463	2422876	2425696	+	Cre01.g013500.t2.1	Cre01.g013500.t2.1		2422767,2423250,2423550,2423901,2424308,2424689,2424888,2425320,2425573	2422946,2423326,2423673,2424019,2424418,2424736,2424923,2425379,2426463	
chr1	2426481	2430236	2427019	2430208	-	Cre01.g013550.t1.1	Cre01.g013550.t1.1		2429614,2429386,2429219,2428659,2428115,2426481	2430236,2429490,2429269,2429084,2428442,2427960	
chr1	2431508	2438386	2432530	2438206	-	Cre01.g013600.t1.1	Cre01.g013600.t1.1		2438041,2437807,2437417,2437292,2436742,2436495,2435792,2435560,2431508	2438386,2437878,2437737,2437344,2437216,2436608,2436350,2435674,2435456	
chr1	2439057	2446056	2439213	2445827	+	Cre01.g013650.t1.1	Cre01.g013650.t1.1		2439057,2439699,2440044,2440323,2440628,2440871,2441223,2441528,2441756,2442041,2442675,2443511,2443901	2439523,2439868,2440202,2440397,2440746,2441057,2441366,2441614,2441875,2442544,2443334,2443690,2446056	
chr1	2446187	2449440	2446485	2448904	+	VDAC1	Cre01.g013700.t2.1		2446187,2446660,2447098,2447459,2447845,2448041,2448492,2448826	2446530,2446770,2447232,2447587,2447932,2448206,2448582,2449440	Outer mitochondrial membrane protein porin.
chr1	2446117	2449440	2446485	2448904	+	VDAC1	Cre01.g013700.t1.2		2446117,2446475,2446660,2447098,2447459,2447845,2448041,2448492,2448826	2446314,2446530,2446770,2447232,2447587,2447932,2448206,2448582,2449440	Outer mitochondrial membrane protein porin.
chr1	2449501	2451236	2449965	2451129	-	Cre01.g013750.t1.1	Cre01.g013750.t1.1		2450856,2450648,2449501	2451236,2450722,2450469	
chr1	2451291	2452426	2451311	2452307	-	Cre01.g013769.t1.2	Cre01.g013769.t1.2		2452211,2452016,2451823,2451543,2451291	2452426,2452081,2451937,2451637,2451416	
chr1	2452547	2456922	2452651	2456586	+	TCY1	Cre01.g013800.t1.1		2452547,2454074,2454395,2454863,2455588,2455930,2456474	2453692,2454206,2454533,2454968,2455742,2456292,2456922	
chr1	2456977	2461828	2457006	2460935	+	Cre01.g013801.t1.2	Cre01.g013801.t1.2		2456977,2457384,2457591,2458220,2458483,2458733,2459019,2459316,2459727,2460342,2460794	2457177,2457476,2457906,2458275,2458569,2458785,2459114,2459453,2459840,2460486,2461828	
chr1	2461831	2464416	2462078	2464329	-	Cre01.g013850.t1.1	Cre01.g013850.t1.1		2464323,2464166,2463913,2463645,2463199,2463005,2461831	2464416,2464247,2463957,2463703,2463419,2463050,2462864	
chr1	2464737	2469986	2465585	2469733	-	Cre01.g013900.t1.1	Cre01.g013900.t1.1		2469623,2469394,2469212,2468586,2468080,2467213,2466927,2466672,2465857,2464737	2469986,2469551,2469262,2468771,2468298,2467964,2467025,2466767,2466485,2465676	
chr1	2464737	2469986	2465585	2469539	-	Cre01.g013900.t2.1	Cre01.g013900.t2.1		2469623,2469394,2469212,2468586,2468080,2467213,2466927,2466672,2465857,2464737	2469986,2469551,2469262,2468771,2468298,2467964,2467025,2466767,2466485,2465676	
chr1	2476468	2478471	2477060	2478359	-	Cre01.g014000.t1.2	Cre01.g014000.t1.2		2478253,2477904,2477511,2476468	2478471,2478074,2477740,2477159	
chr1	2478597	2484288	2478701	2483320	+	Cre01.g014050.t1.2	Cre01.g014050.t1.2		2478597,2478826,2479057,2479258,2480935,2481294,2481547,2481879,2482167,2482497,2482856,2483165	2478758,2478884,2479126,2479327,2481098,2481421,2481643,2481962,2482280,2482644,2482936,2484288	
chr1	2484311	2487446	2484465	2487410	-	Cre01.g014100.t1.2	Cre01.g014100.t1.2		2487309,2487077,2486217,2485111,2484311	2487446,2487192,2486290,2485983,2484852	
chr1	2487547	2493455	2487592	2492860	+	MFT5	Cre01.g014150.t1.2		2487547,2488176,2488552,2488901,2489413,2489808,2490218,2490635,2491060,2491337,2491769,2492083,2492383,2492608	2487723,2488251,2488628,2489073,2489522,2489936,2490343,2490743,2491146,2491486,2491887,2492187,2492430,2493455	
chr1	2493481	2498206	2493805	2497564	-	Cre01.g014200.t1.2	Cre01.g014200.t1.2		2496501,2495560,2495294,2494908,2493481	2498206,2496261,2495352,2494961,2494501	
chr1	2498317	2503468	2498406	2502759	+	OPR2	Cre01.g014250.t1.1		2498317,2501067	2500830,2503468	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr1	2503521	2511686	2504474	2511601	-	Cre01.g014300.t1.1	Cre01.g014300.t1.1		2511364,2510960,2510749,2510369,2510074,2509658,2509482,2509258,2508930,2508503,2508107,2507925,2507632,2504782,2503521	2511686,2511098,2510833,2510609,2510169,2509720,2509529,2509364,2509098,2508769,2508386,2508029,2507686,2507438,2504474	
chr1	2503521	2511686	2504474	2511601	-	Cre01.g014300.t2.1	Cre01.g014300.t2.1		2511364,2510960,2510749,2510369,2510074,2509658,2509482,2509258,2508930,2508503,2508107,2507632,2504782,2503521	2511686,2511098,2510833,2510609,2510169,2509720,2509529,2509364,2509098,2508769,2508386,2507686,2507438,2504474	
chr1	2511841	2514278	2511944	2513764	+	PRX5	Cre01.g014350.t1.2		2511841,2512449,2512694,2513176,2513692	2511973,2512559,2512853,2513388,2514278	thioredoxin dependent peroxidase, N-terminal sequence predicted as a mitochondrial targeting signal BUT the protein is more closely related to chloroplastic type II PRX from Arabidopsis (AtPRXIIE).
chr1	2514327	2518908	2514747	2518413	+	Cre01.g014400.t1.1	Cre01.g014400.t1.1		2514327,2515131,2515446,2515612,2515888,2516085,2517114,2517412,2517747,2518000,2518309	2514936,2515239,2515500,2515680,2515978,2516233,2517228,2517565,2517831,2518130,2518908	
chr1	2521720	2528834	2521941	2528161	+	Cre01.g014450.t1.1	Cre01.g014450.t1.1		2521720,2522344	2522022,2528834	
chr1	2528844	2535169	2529594	2534977	-	Cre01.g014500.t1.1	Cre01.g014500.t1.1		2534817,2534167,2533726,2533294,2532937,2532603,2531230,2530020,2528844	2535169,2534339,2533850,2533525,2533117,2532679,2532503,2531065,2529869	
chr1	2537588	2539626	2537823	2539115	+	CSK2	Cre01.g014600.t1.2		2537588,2537969,2538075,2538291,2538767,2538979	2537902,2538009,2538144,2538396,2538853,2539626	
chr1	2540097	2544221	2540195	2543726	+	PFH5	Cre01.g014650.t1.2		2540097,2540507,2541406,2541633,2541949,2542125,2542349,2542550,2542768,2543120,2543307,2543571	2540262,2540642,2541502,2541668,2541992,2542212,2542433,2542586,2542994,2543145,2543403,2544221	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate; contains C-terminal ShK domain
chr1	2544414	2547610	2544702	2547068	-	Cre01.g014700.t1.2	Cre01.g014700.t1.2		2546783,2546506,2546016,2545613,2545248,2544414	2547610,2546592,2546177,2545825,2545411,2545066	
chr1	2549034	2550939	2550019	2550839	-	Cre01.g014751.t1.1	Cre01.g014751.t1.1		2550566,2550391,2549034	2550939,2550422,2550197	
chr1	2551011	2557909	2551440	2557768	-	MSH7	Cre01.g014800.t1.1		2557507,2557120,2556840,2556549,2556205,2555826,2555323,2555093,2554584,2554101,2553813,2553466,2553161,2552819,2552451,2552222,2551917,2551011	2557909,2557250,2556918,2556728,2556384,2555999,2555444,2555180,2554800,2554336,2553929,2553650,2553320,2553036,2552605,2552310,2552052,2551751	MutS homolog.  Forms a complex with MLH proteins
chr1	2558378	2561791	2559191	2561206	+	Cre01.g014850.t1.2	Cre01.g014850.t1.2		2558378,2558816,2559333,2559541,2559963,2560252,2560562,2560906,2561158	2558569,2559194,2559364,2559686,2560066,2560425,2560744,2560968,2561791	
chr1	2561891	2567009	2563025	2566301	-	Cre01.g014900.t1.1	Cre01.g014900.t1.1		2566223,2565228,2564961,2564763,2564423,2564219,2564033,2563740,2563319,2561891	2567009,2566145,2565059,2564819,2564521,2564262,2564090,2563865,2563546,2563166	
chr1	2568750	2573480	2568806	2571864	+	Cre01.g014950.t1.1	Cre01.g014950.t1.1		2568750,2569226,2569429,2569907,2570298,2570816,2571552	2569011,2569237,2569712,2570000,2570469,2571065,2573480	
chr1	2568750	2573480	2569535	2571864	+	Cre01.g014950.t2.1	Cre01.g014950.t2.1		2568750,2569226,2569429,2569907,2570298,2570816,2571552	2569011,2569319,2569712,2570000,2570469,2571065,2573480	
chr1	2575773	2580271	2575914	2579146	+	NAGK1	Cre01.g015000.t1.2		2575773,2576278,2576813,2577353,2577885,2578321,2579017	2576073,2576409,2576957,2577486,2578046,2578482,2580271	Acetylglutamate kinase-like protein, chloroplast precursor
chr1	2580350	2588881	2580440	2588398	+	AGK1	Cre01.g015050.t1.1		2580350,2580517,2580822,2583106,2583458,2583804,2584218,2585039,2588117	2580458,2580660,2582881,2583223,2583678,2584105,2584776,2587959,2588881	Acetylglutamate kinase-like protein, chloroplast precursor
chr1	2588884	2591339	2590339	2591293	-	CSB5	Cre01.g015100.t1.1		2590807,2590578,2588884	2591339,2590688,2590462	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	2591387	2607759	2591450	2607681	-	Cre01.g015103.t1.2	Cre01.g015103.t1.2		2607532,2607307,2606714,2606307,2606051,2605602,2605240,2604957,2604261,2603824,2603458,2603288,2603110,2602902,2602674,2595207,2594604,2594324,2593933,2593496,2591387	2607759,2607370,2607077,2606425,2606124,2605839,2605394,2605060,2604705,2604072,2603655,2603342,2603133,2602983,2602753,2602532,2595088,2594454,2594195,2593789,2593283	Contains periplasmic binding protein-like II domain and bacterial extracellular solute-binding (family 1) domain.  May be involved in solute transport and early steps of a signal transduction cascade
chr1	2607814	2611623	2608163	2611452	-	Cre01.g015150.t1.2	Cre01.g015150.t1.2		2611404,2610395,2610086,2609846,2609245,2608991,2608749,2608408,2607814	2611623,2611306,2610184,2609902,2609337,2609092,2608874,2608635,2608289	
chr1	2612542	2620849	2613696	2620567	-	PDE4	Cre01.g015200.t1.1		2620729,2620537,2620138,2619941,2619736,2619033,2618694,2618484,2618125,2617761,2615806,2615460,2615209,2614905,2614436,2612542	2620849,2620665,2620207,2620038,2619838,2619259,2618830,2618541,2618362,2617924,2617533,2615639,2615346,2615102,2614617,2614168	Metal-dependent phosphohydrolase; may be involved in cAMP signal transduction
chr1	2620925	2630702	2622177	2630453	-	POLD1	Cre01.g015250.t1.1		2630381,2630048,2629625,2629343,2629005,2628719,2628298,2628039,2627769,2627422,2627092,2626833,2626530,2626056,2625771,2625518,2625261,2624683,2624259,2623865,2623550,2623167,2622809,2622569,2620925	2630702,2630198,2629695,2629495,2629164,2628825,2628424,2628142,2627881,2627586,2627258,2626927,2626605,2626241,2625861,2625640,2625336,2624892,2624444,2624038,2623678,2623329,2622879,2622649,2622396	Homologous to eukaryotic DNA polymerase delta catalytic subunit; Replication polymerase. Class B polymerase.ts-lethal mutations block in S/M (PMID 25336509)
chr1	2630829	2635122	2631362	2634682	+	Cre01.g015300.t1.1	Cre01.g015300.t1.1		2630829,2631978,2632239,2633349,2634067,2634430	2631818,2632109,2633140,2633886,2634177,2635122	
chr1	2635337	2638506	2635405	2637415	+	POR1	Cre01.g015350.t1.1		2635337,2635838,2636850,2637256	2635405,2636662,2637059,2638506	Light-dependent protochlorophyllide reductase, chloroplast precursor; Converts protochlorophyllide to chlorophyllide using NADPH and light as the reductant; Chlamydomonas mutant known as pc-1 has a two-nucleotide deletion within the fourth and fifth codon
chr1	2638514	2642489	2639101	2642274	-	Cre01.g015400.t1.2	Cre01.g015400.t1.2		2642205,2641810,2640958,2640154,2639593,2638514	2642489,2641899,2641485,2640738,2639808,2639332	
chr1	2642544	2647549	2643200	2647455	-	Cre01.g015451.t1.1	Cre01.g015451.t1.1		2646933,2644959,2644590,2643739,2642544	2647549,2646725,2644709,2644329,2643569	
chr1	2647605	2649759	2648235	2649429	-	CGL91	Cre01.g015500.t1.2		2649334,2649066,2647605	2649759,2649152,2648860	
chr1	2649930	2652751	2650029	2652303	+	Cre01.g015550.t1.1	Cre01.g015550.t1.1		2649930,2650633,2650961,2651221,2651538,2651874	2650314,2650761,2651046,2651353,2651609,2652751	Involved in ascorbate and aldarate metabolism
chr1	2652800	2670781	2652812	2670310	+	Cre01.g015600.t1.1	Cre01.g015600.t1.1		2652800,2653385,2653945,2654765,2655247,2655757,2656911,2658334,2658793,2659237,2659876,2660304,2660731,2661264,2661615,2662131,2662608,2662934,2663364,2663798,2664325,2665202,2665672,2667479,2667898,2668201,2668684,2669579	2652918,2653689,2654193,2654912,2655446,2655919,2658058,2658507,2658942,2659426,2660126,2660449,2661032,2661386,2661902,2662312,2662763,2663074,2663633,2664055,2664690,2665420,2666769,2667604,2668029,2668476,2668915,2670781	
chr1	2670784	2672766	2671174	2672713	-	Cre01.g015650.t1.2	Cre01.g015650.t1.2		2672010,2671468,2670784	2672766,2671721,2671174	
chr1	2672814	2675606	2673077	2675293	-	Cre01.g015700.t1.2	Cre01.g015700.t1.2		2675236,2674840,2674455,2674083,2673637,2672814	2675606,2674940,2674520,2674202,2673760,2673314	
chr1	2675728	2678846	2676337	2678486	+	Cre01.g015750.t1.2	Cre01.g015750.t1.2		2675728,2676190,2676843,2677256,2677489,2677822,2678118,2678365	2675993,2676590,2677009,2677354,2677568,2677879,2678182,2678846	
chr1	2682935	2686094	2683683	2685875	-	FAP68	Cre01.g015850.t1.1		2685847,2685604,2685086,2684742,2684111,2682935	2686094,2685679,2685253,2684860,2684488,2683853	Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG17 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]
chr1	2686470	2690115	2687061	2689200	+	CPL11	Cre01.g015950.t1.2		2686470,2687710,2688241,2688658,2689092	2687307,2687937,2688360,2688792,2690115	Conserved expressed organellar protein involved in translation; putative translation factor (SUA5); found in plants and cyanobacteria
chr1	2690124	2694380	2690760	2694355	-	Cre01.g016001.t1.1	Cre01.g016001.t1.1		2693309,2692356,2691222,2690124	2694380,2693028,2692078,2690977	
chr1	2694480	2710860	2694643	2710026	+	PRP8	Cre01.g016050.t1.2		2694480,2695842,2696192,2696650,2697121,2697514,2697793,2698183,2698530,2699021,2699415,2699833,2700146,2700498,2701005,2701370,2701798,2702103,2702554,2702939,2703318,2703791,2704314,2704693,2705094,2705532,2706016,2706415,2706716,2707086,2707372,2707887,2708428,2708803,2709515,2709950	2694919,2695955,2696314,2696850,2697224,2697652,2697948,2698359,2698757,2699179,2699623,2699989,2700221,2700792,2701170,2701626,2701907,2702331,2702695,2703111,2703597,2704153,2704490,2704848,2705333,2705783,2706200,2706560,2706915,2707181,2707659,2708204,2708619,2709357,2709696,2710860	Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5' and 3' exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5' splice sites in B spliceosomes and 3' splice sites in C spliceosomes. Part of the U5 snRNP complex, and of U5.4/6 and U5.U4atac/U6atac snRNP complexes in U2- and U12-dependent spliceosomes, respectively. ts-lethal mutant isolated (PMID 29743196)
chr1	2711240	2715811	2711336	2715127	+	Cre01.g016100.t1.1	Cre01.g016100.t1.1		2711240,2711552,2711744,2711950,2712110,2712445,2712630,2712849,2713010,2713301,2713499,2713815,2714109,2714391,2714679,2714944	2711440,2711608,2711841,2711988,2712251,2712514,2712717,2712901,2713146,2713349,2713629,2713844,2714145,2714477,2714741,2715811	
chr1	2718277	2723882	2718805	2723727	-	Cre01.g016150.t1.2	Cre01.g016150.t1.2		2723638,2723234,2722602,2722155,2721603,2721261,2720972,2720533,2720079,2719763,2719352,2718277	2723882,2723288,2722689,2722225,2721670,2721313,2721021,2720613,2720192,2719831,2719484,2719065	
chr1	2723937	2732153	2724531	2732117	-	MLO4	Cre01.g016200.t1.1		2731925,2731553,2731032,2730650,2730352,2730000,2727587,2727219,2726822,2726219,2725007,2723937	2732153,2731635,2731186,2730690,2730378,2730128,2729767,2727383,2726908,2726373,2725981,2724778	Integral membrane protein, plant GCPR-like Mlo family; contains a C-terminal EF-hand domain pair; linked to MLO3
chr1	2745657	2748322	2745843	2747424	-	MLO3	Cre01.g016250.t1.1		2747974,2747342,2746800,2746038,2745657	2748322,2747641,2746933,2746201,2745859	Integral membrane protein, plant GCPR-like Mlo family; may contains a C-terminal EF-hand domain pair like other MLO proteins, but gene model is truncated by sequence gap; linked to MLO4
chr1	2748973	2754294	2749181	2753297	+	CAM3	Cre01.g016300.t1.1		2748973,2749749,2750277,2750747,2751188,2751644,2752097,2752335,2752756,2753260	2749379,2749851,2750396,2750816,2751275,2751703,2752156,2752480,2752860,2754294	
chr1	2755223	2758879	2755562	2757088	+	Cre01.g016350.t1.1	Cre01.g016350.t1.1		2755223,2755750,2755916,2756212	2755565,2755783,2755983,2758879	
chr1	2761073	2765230	2761507	2763224	+	Cre01.g016400.t1.1	Cre01.g016400.t1.1		2761073,2761704,2762042	2761594,2761748,2765230	
chr1	2765237	2771922	2765655	2771753	-	Cre01.g016450.t1.1	Cre01.g016450.t1.1		2771593,2770739,2769830,2769452,2769121,2766815,2765237	2771922,2770946,2770078,2769625,2769211,2768146,2766483	
chr1	2772166	2774172	2772543	2773954	-	DLD2	Cre01.g016500.t1.1		2772166	2774172	Putative dihydrolipoamide dehydrogenase (EC 1.8.1.4), E3 component of pyruvate dehydrogenase complex, plastid precursor.
chr1	2774237	2781522	2774964	2781007	-	DLD2	Cre01.g016514.t1.1		2781159,2780831,2780606,2780022,2779104,2778624,2778025,2777366,2776767,2776559,2776077,2775674,2774237	2781522,2781030,2780747,2780168,2779208,2778762,2778179,2777495,2776948,2776651,2776265,2775823,2775114	
chr1	2781663	2787514	2781821	2786523	+	Cre01.g016528.t1.1	Cre01.g016528.t1.1		2781663,2782526,2783191,2783797,2784208,2785118,2785750,2786256	2782103,2782645,2783332,2784013,2784291,2785346,2785911,2787514	
chr1	2788973	2791524	2789025	2790855	+	Cre01.g016542.t1.1	Cre01.g016542.t1.1		2788973,2789467,2790561	2789238,2790057,2791524	
chr1	2790484	2791524	2790515	2790855	+	Cre01.g016542.t2.1	Cre01.g016542.t2.1		2790484	2791524	
chr1	2792834	2795622	2793699	2795267	-	Cre01.g016556.t1.1	Cre01.g016556.t1.1		2795483,2795139,2794813,2794463,2794156,2792834	2795622,2795384,2795043,2794628,2794256,2793928	
chr1	2796247	2808682	2797342	2808459	-	Cre01.g016570.t1.1	Cre01.g016570.t1.1		2808197,2807851,2807143,2806501,2805714,2805010,2803644,2803246,2802522,2802041,2801535,2800468,2800109,2799250,2798876,2798274,2797976,2796247	2808682,2807942,2807226,2806674,2805845,2805081,2804703,2803343,2802920,2802232,2801660,2801082,2800255,2799909,2798947,2798342,2798133,2797505	
chr1	2809303	2811543	2809728	2810848	+	PSBS1	Cre01.g016600.t1.2		2809303,2809990,2810299	2809830,2810076,2811543	one of the two neighbor genes homologous to higher plant PsbS (Npq4) that is involved in Non-Photochemical Quenching (PMID: 10667783; PMID:15222740); corresponds to the gene mentioned in PMID: 16143839; shows a single AA difference compared to downstream convergent PSBS2; involved in acclimatation to UV-B; regulated by UVR8
chr1	2812497	2814092	2812673	2813741	-	Cre01.g016651.t1.1	Cre01.g016651.t1.1		2813602,2812497	2814092,2812933	
chr1	2814343	2817364	2814891	2816609	+	Cre01.g016700.t1.1	Cre01.g016700.t1.1		2814343,2814863,2815144,2815348,2815627,2816312	2814559,2815000,2815197,2815511,2816034,2817364	
chr1	2818212	2820402	2818884	2820005	-	PSBS2	Cre01.g016750.t1.2		2819903,2819656,2818212	2820402,2819742,2819433	one of the two neighbor genes homologous to higher plant PsbS (Npq4) that is involved in Non-Photochemical Quenching (PMID: 10667783; PMID:15222740); shows a single AA difference compared to upstream convergent PSBS1; involved in acclimatation to UV-B; regulated by UVR8
chr1	2821083	2825144	2821408	2824453	+	Cre01.g016800.t1.1	Cre01.g016800.t1.1		2821083,2821961,2823088,2823374	2821624,2822830,2823181,2825144	
chr1	2825155	2827192	2825726	2827130	-	Cre01.g016850.t1.2	Cre01.g016850.t1.2		2827054,2826810,2826636,2826331,2826007,2825155	2827192,2826850,2826680,2826378,2826068,2825726	
chr1	2827247	2829352	2827813	2829272	-	Cre01.g016900.t1.2	Cre01.g016900.t1.2		2829139,2828712,2828417,2828101,2827247	2829352,2828828,2828482,2828216,2827867	
chr1	2829407	2832922	2829563	2831992	-	Cre01.g016950.t1.2	Cre01.g016950.t1.2		2832824,2832657,2832442,2831735,2831296,2831009,2830603,2830050,2829407	2832922,2832698,2832502,2832160,2831422,2831113,2830769,2830404,2829680	
chr1	2833067	2837434	2833641	2836507	+	MCP1	Cre01.g017050.t1.2		2833067,2833504,2833972,2834484,2834873,2835353,2835699,2836013,2836427	2833191,2833827,2834061,2834633,2834950,2835442,2835797,2836133,2837434	
chr1	2837483	2844924	2837617	2844209	+	Cre01.g017100.t1.1	Cre01.g017100.t1.1		2837483,2838020,2838474,2838960,2839355,2839867,2840257,2841061,2842147,2842464,2842890,2843184,2843529,2844065	2837866,2838089,2838543,2839014,2839581,2839984,2840749,2841653,2842301,2842610,2843022,2843310,2843683,2844924	
chr1	2844937	2854522	2845321	2854334	-	Cre01.g017150.t1.1	Cre01.g017150.t1.1		2851327,2846822,2844937	2854522,2851190,2846480	
chr1	2854604	2860912	2854825	2860888	-	FKB99	Cre01.g017200.t1.2		2860775,2860517,2860134,2859675,2859129,2858620,2857959,2856886,2856669,2856338,2856109,2855880,2855513,2855143,2854604	2860912,2860604,2860278,2859781,2859263,2858752,2858281,2857186,2856727,2856475,2856206,2855961,2855598,2855235,2854952	Contains 3 N-terminal FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin) domains and C-terminal TPR repeats  [PMID: 15701785]; orthologue of AT3G25230
chr1	2860967	2864092	2861260	2863855	-	Cre01.g017250.t1.2	Cre01.g017250.t1.2		2863832,2863367,2862939,2862704,2862201,2861826,2860967	2864092,2863444,2863047,2862791,2862349,2861981,2861599	belongs to a small multigene family specific of Chlorophyceae
chr1	2864193	2865618	2864270	2864826	+	PRPS21	Cre01.g017300.t1.2		2864193	2865618	imported to chloroplast; Chloroplast small ribosomal subunit protein S21
chr1	2865717	2869292	2866327	2869264	-	RMT3	Cre01.g017350.t1.1		2869254,2869140,2868839,2868505,2867804,2867532,2867156,2865717	2869292,2869195,2868895,2868696,2868245,2867634,2867297,2866951	SET domain-containing methyltransferase; Similar to At1g143 F7A19.12, F16A14.25; putative ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [EC:2.1.1.127].  ChromoDB SDG3413
chr1	2869367	2874362	2869726	2873769	-	Cre01.g017400.t1.1	Cre01.g017400.t1.1		2874210,2873173,2872694,2872242,2871831,2871512,2871161,2870876,2870504,2870172,2869367	2874362,2873887,2872889,2872430,2872047,2871699,2871292,2871016,2870695,2870300,2869921	
chr1	2869367	2874362	2869726	2873769	-	Cre01.g017400.t2.1	Cre01.g017400.t2.1		2874009,2873173,2872694,2872242,2871831,2871512,2871161,2870876,2870504,2870172,2869367	2874362,2873887,2872889,2872430,2872047,2871699,2871292,2871016,2870695,2870300,2869921	
chr1	2874477	2878902	2874821	2878701	-	POLA2	Cre01.g017450.t1.1		2878531,2878239,2877776,2877478,2876826,2876388,2876027,2875697,2875335,2874477	2878902,2878394,2878049,2877636,2877271,2876611,2876173,2875809,2875516,2875155	Homologous to eukaryotic DNA polymerase alpha catalytic subunit; Replication polymerase. Class B polymerase.ts-lethal mutations block in S/M (PMID 25336509)
chr1	2879003	2882844	2879101	2882370	+	Cre01.g017500.t1.2	Cre01.g017500.t1.2		2879003,2879545,2879931,2880198,2880439,2880800,2881300,2881726,2882235	2879129,2879650,2880018,2880263,2880624,2881012,2881441,2881901,2882844	
chr1	2884403	2889224	2885440	2888672	+	Cre01.g017550.t1.1	Cre01.g017550.t1.1		2884403,2885386,2886379,2886778,2887029,2887493	2884697,2886090,2886488,2886860,2887373,2889224	
chr1	2889252	2899352	2889846	2899125	-	Cre01.g017600.t1.1	Cre01.g017600.t1.1		2899094,2898129,2897676,2897247,2896923,2896831,2896716,2896456,2896098,2895643,2895447,2895046,2894877,2894560,2894098,2893778,2893482,2893202,2892773,2892559,2892320,2891964,2891823,2891519,2891207,2890869,2890667,2889252	2899352,2898197,2897821,2897327,2897035,2896850,2896738,2896559,2896261,2895682,2895500,2895106,2894930,2894652,2894296,2893886,2893569,2893324,2892947,2892584,2892431,2892090,2891879,2891644,2891288,2890938,2890757,2890525	Presents motifs found on quinoproteins whose redox cofactor is a pyrrolo-quinoline quinone (PQQ); closely related to linked PPQ1 gene; most similar to bacterial quinoproteins; no orthologue found in Volvox
chr1	2889252	2899352	2889846	2899125	-	Cre01.g017600.t2.1	Cre01.g017600.t2.1		2899094,2898129,2897676,2897247,2896939,2896716,2896456,2896098,2895643,2895447,2895046,2894877,2894560,2894098,2893778,2893482,2893202,2892773,2892559,2892320,2891964,2891823,2891519,2891207,2890869,2890667,2889252	2899352,2898197,2897821,2897327,2897035,2896738,2896559,2896261,2895682,2895500,2895106,2894930,2894652,2894296,2893886,2893569,2893324,2892947,2892584,2892431,2892090,2891879,2891644,2891288,2890938,2890757,2890525	Presents motifs found on quinoproteins whose redox cofactor is a pyrrolo-quinoline quinone (PQQ); closely related to linked PPQ1 gene; most similar to bacterial quinoproteins; no orthologue found in Volvox
chr1	2901181	2905799	2902275	2905608	-	FAP34	Cre01.g017650.t1.2		2905592,2905297,2905041,2904550,2904019,2903804,2903550,2903051,2902620,2901181	2905799,2905439,2905121,2904609,2904130,2903862,2903663,2903110,2902704,2902370	
chr1	2901181	2905976	2902275	2905608	-	FAP34	Cre01.g017650.t2.1		2905592,2905297,2905041,2904550,2904019,2903804,2903550,2903051,2902620,2901181	2905976,2905439,2905121,2904609,2904130,2903862,2903663,2903110,2902704,2902370	
chr1	2908727	2918016	2909457	2917268	-	Cre01.g017701.t1.1	Cre01.g017701.t1.1		2917251,2917104,2915466,2914601,2910807,2908727	2918016,2917161,2916962,2915213,2914534,2909673	
chr1	2922057	2929292	2922261	2927075	+	Cre01.g017750.t1.1	Cre01.g017750.t1.1		2922057,2922759,2923457,2923708,2924018,2924582,2925485	2922442,2922800,2923489,2923758,2924411,2925134,2929292	
chr1	2922057	2925319	2922261	2925216	+	Cre01.g017750.t2.1	Cre01.g017750.t2.1		2922057,2922759,2923457,2923708,2924018,2924582	2922442,2922800,2923489,2923758,2924411,2925319	
chr1	2929471	2932656	2929930	2932250	-	Cre01.g017850.t1.2	Cre01.g017850.t1.2		2932491,2931201,2930935,2930621,2930138,2929471	2932656,2932410,2931089,2930841,2930511,2929930	ts-lethal mutation block is S/M (PMID 29743196)
chr1	2932757	2943237	2933342	2942746	+	Cre01.g017900.t1.1	Cre01.g017900.t1.1		2932757,2934350,2934714,2935203,2935546,2935831,2936013,2936313,2936892,2937077,2937470,2937646,2937952,2938318,2938729,2939041,2939283,2939660,2940023,2940176,2940501,2940712,2940952,2941305,2941654,2941835,2942067	2933457,2934418,2934859,2935283,2935642,2935853,2936116,2936476,2936931,2937130,2937530,2937699,2938044,2938516,2938834,2939128,2939405,2939834,2940048,2940287,2940627,2940768,2941077,2941386,2941723,2941925,2943237	
chr1	2943241	2948156	2943890	2947930	-	Cre01.g017951.t1.1	Cre01.g017951.t1.1		2947868,2946475,2946076,2945702,2945189,2943241	2948156,2947179,2946185,2945784,2945533,2945069	
chr1	2948891	2951156	2949762	2950897	-	RPA12	Cre01.g018000.t1.1		2950782,2950467,2949963,2948891	2951156,2950591,2950072,2949787	called Rpa12p in yeast
chr1	2951257	2958318	2951793	2957876	+	Cre01.g018050.t1.2	Cre01.g018050.t1.2		2951257,2952169,2952606,2953016,2953811,2954153,2954413,2954822,2955699,2956126,2956526,2956825,2957288,2957652	2951921,2952400,2952875,2953604,2953942,2954286,2954530,2955560,2955903,2956326,2956664,2957129,2957474,2958318	Some similarity to NEF1 of Arabidopsis.  Encodes a membrane protein that probably plays a role in maintaining plastid envelope integrity; defects lead to lipid accumulation problems in plastids of A. thaliani leaves (PMID: 15225283)
chr1	2958377	2960298	2959005	2960260	+	Cre01.g018075.t1.1	Cre01.g018075.t1.1		2958377,2958931,2959237,2959825	2958811,2959097,2959627,2960298	
chr1	2960301	2963526	2961234	2963285	-	Cre01.g018100.t1.2	Cre01.g018100.t1.2		2963066,2962604,2962262,2961914,2960301	2963526,2962734,2962395,2962056,2961720	
chr1	2963666	2967168	2963866	2965400	+	Cre01.g018150.t1.2	Cre01.g018150.t1.2		2963666,2964296,2965018,2965305	2964078,2964813,2965131,2967168	
chr1	2967171	2968146	2967363	2967951	-	Cre01.g018184.t1.2	Cre01.g018184.t1.2		2967926,2967673,2967472,2967171	2968146,2967779,2967537,2967393	
chr1	2968518	2980126	2968883	2979470	-	Cre01.g018200.t1.1	Cre01.g018200.t1.1		2979864,2979395,2976252,2975317,2973509,2973229,2972802,2972435,2972101,2971806,2971415,2968518	2980126,2979585,2978981,2976075,2975155,2973376,2973099,2972564,2972289,2971927,2971619,2971256	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
chr1	2987907	2993398	2988038	2992360	+	Cre01.g018350.t1.2	Cre01.g018350.t1.2		2987907,2988412,2988592,2988866,2989064,2989353,2989855,2990220,2990515,2990793,2991080,2991347,2991803,2992177	2988270,2988458,2988650,2988980,2989174,2989544,2989929,2990393,2990562,2990954,2991218,2991647,2992067,2993398	
chr1	2993401	2997316	2993939	2997037	-	ITPK2	Cre01.g018400.t1.1		2996814,2996314,2996002,2995734,2994794,2994493,2994298,2993401	2997316,2996534,2996110,2995864,2995462,2994514,2994366,2994184	Forms 1,3,4,5-InsP4 and 1,3,4,6-InsP4 from 1,3,4-InsP3; also acts as an inositol-tetrakisphosphate 6-kinase
chr1	2997437	3001961	2997571	3001465	+	Cre01.g018450.t1.1	Cre01.g018450.t1.1		2997437,2997802,2998370,2999291,2999670,2999894,3000210,3000765,3000925,3001234	2997629,2997972,2998483,2999448,2999738,3000082,3000413,3000790,3001036,3001961	
chr1	3002128	3006078	3002451	3005822	+	Cre01.g018500.t1.1	Cre01.g018500.t1.1		3002128,3003449,3003981,3004276,3004694,3004895,3005100	3003138,3003832,3004086,3004506,3004749,3004961,3006078	
chr1	3006086	3018385	3007105	3018290	-	CYG69	Cre01.g018550.t1.1		3018114,3017886,3017203,3016823,3016460,3015926,3015606,3015020,3014674,3014389,3014097,3013764,3013338,3013052,3012828,3012615,3011482,3011127,3010447,3010051,3009515,3009245,3008968,3006086	3018385,3017967,3017410,3017028,3016542,3016068,3015747,3015413,3014875,3014570,3014261,3013906,3013576,3013159,3012895,3012691,3012495,3011253,3010820,3010255,3009874,3009364,3009096,3008725	
chr1	3018856	3021856	3018885	3021435	+	Cre01.g018600.t1.2	Cre01.g018600.t1.2		3018856,3019763,3020073,3020611,3020968,3021209	3018972,3019817,3020129,3020708,3021011,3021856	
chr1	3022716	3032760	3023615	3029955	+	Cre01.g018650.t1.1	Cre01.g018650.t1.1		3022716,3023021,3023454,3025172,3025372,3025700,3026109,3026943,3027235,3029127,3029347	3022855,3023114,3025047,3025227,3025605,3025948,3026801,3027089,3029012,3029218,3032760	
chr1	3034730	3040215	3035143	3039977	-	Cre01.g018700.t1.1	Cre01.g018700.t1.1		3039935,3039639,3039381,3039133,3038706,3038395,3038119,3037864,3037375,3036976,3036634,3036263,3035853,3035527,3034730	3040215,3039719,3039470,3039205,3038977,3038502,3038184,3037983,3037650,3037175,3036755,3036383,3036025,3035627,3035281	
chr1	3040346	3051369	3040576	3050841	+	Cre01.g018750.t1.2	Cre01.g018750.t1.2		3040346,3041157,3041577,3041914,3042363,3042747,3043063,3043426,3043957,3044293,3045271,3045696,3046709,3047141,3047538,3048192,3048672,3049110,3049419,3049827,3050366	3040736,3041323,3041667,3042064,3042560,3042927,3043162,3043764,3044129,3045091,3045500,3046601,3046846,3047314,3047801,3048343,3048891,3049226,3049541,3050194,3051369	ts-lethal mutation block is S/M (PMID 29743196)
chr1	3051526	3055126	3051658	3053828	+	ATP6	Cre01.g018800.t1.2		3051526,3051892,3052002,3052139,3052523,3052946,3053314,3053610	3051776,3051929,3052049,3052262,3052682,3053127,3053448,3055126	subunit 6 of the mitochondrial F1F0-ATP synthase; [= yeast and bovine ATPA subunit]; part of the F0 sector
chr1	3055131	3058735	3055586	3058700	-	Cre01.g018850.t1.2	Cre01.g018850.t1.2		3058590,3058273,3057991,3057677,3057308,3056958,3056196,3055131	3058735,3058375,3058074,3057815,3057453,3057107,3056419,3055956	
chr1	3058876	3065307	3059480	3064515	+	Cre01.g018900.t1.2	Cre01.g018900.t1.2		3058876,3059142,3059767,3061081,3061671,3062267,3062732,3063190,3063509,3063739,3063940,3064129,3064368	3058988,3059599,3060778,3061460,3061952,3062362,3062879,3063300,3063538,3063811,3064004,3064164,3065307	
chr1	3065757	3069075	3066436	3069055	-	DHS1	Cre01.g018950.t1.2		3068992,3068413,3067746,3067398,3067011,3065757	3069075,3068558,3067858,3067560,3067240,3066771	Transfers the aminobutyl moiety of spermidine to a specific lysine residue of eIF5A, forming deoxyhypusine (PMID: 17476569); deoxypusine will then be hydroxylated to generate the unusual aminoacid hypusine; an important mechanism controlling cell proliferation and growth (PMID: 16600425)
chr1	3069130	3071655	3069150	3071575	-	Cre01.g019000.t1.2	Cre01.g019000.t1.2		3071395,3071242,3071005,3070767,3070354,3069261,3069130	3071655,3071284,3071054,3070816,3070427,3069790,3069150	
chr1	3071756	3079277	3071802	3079015	+	Cre01.g019051.t1.1	Cre01.g019051.t1.1		3071756,3073523,3073896,3074282,3074627,3075021,3076193,3076482,3076928,3078090,3078916	3073266,3073662,3074094,3074409,3074801,3075141,3076218,3076700,3077773,3078647,3079277	null-allele mutant was isolated (PMID 29743196)
chr1	3079301	3082875	3079775	3082670	-	Cre01.g019100.t1.2	Cre01.g019100.t1.2		3082575,3082223,3081768,3081534,3081189,3080664,3080077,3079301	3082875,3082292,3081930,3081595,3081335,3080873,3080210,3079848	
chr1	3083016	3089307	3083099	3088917	+	GCP4	Cre01.g019150.t1.2		3083016,3083298,3083588,3084147,3084477,3084889,3085317,3085769,3086179,3086534,3087003,3087376,3087583,3087777,3088034,3088323,3088647	3083221,3083396,3083733,3084253,3084667,3085135,3085499,3085873,3086300,3086672,3087173,3087410,3087649,3087830,3088102,3088427,3089307	Putative gamma-tubulin ring complex protein 4
chr1	3090076	3095157	3090130	3093926	+	NOP52	Cre01.g019200.t1.1		3090076,3090506,3090893,3091246,3091934,3092351,3092585,3093427,3093752	3090394,3090556,3091035,3091476,3092078,3092414,3093285,3093585,3095157	Protein NNP-1, Novel nuclear protein 1; Nop52 is believed to be involved in the generation of 28S rRNA (PMID: 10341208). ts lethal mutations isolated (PMID 25336509)
chr1	3095306	3098524	3095360	3098105	+	GME	Cre01.g019250.t1.2		3095306,3095555,3096046,3096422,3096813,3097218,3097951	3095466,3095652,3096207,3096471,3096915,3097699,3098524	homolog to Arabidopsis GDP-mannose-3',5'-epimerase (GME) (AT5G28840); PMID: 16366586
chr1	3098530	3115465	3100128	3115326	-	Cre01.g019300.t1.1	Cre01.g019300.t1.1		3115180,3114945,3114303,3113885,3113371,3112799,3112376,3111744,3111477,3111151,3108628,3108308,3105309,3105013,3104513,3098530	3115465,3115029,3114848,3113990,3113675,3113193,3112639,3112171,3111604,3111264,3110990,3108428,3108175,3105184,3104829,3104272	contains a Class III nucleotidyl cyclase domain
chr1	3120166	3121227	3120293	3120744	+	Cre01.g019400.t1.2	Cre01.g019400.t1.2		3120166	3121227	
chr1	3122836	3125911	3123099	3125438	+	Cre01.g019450.t1.1	Cre01.g019450.t1.1		3122836,3123331,3123779,3123986,3124207,3124367,3124742,3124933,3125169,3125399	3123162,3123433,3123800,3124035,3124236,3124494,3124761,3124957,3125225,3125911	
chr1	3122836	3125911	3123099	3125438	+	Cre01.g019450.t2.1	Cre01.g019450.t2.1		3122836,3123331,3123779,3123986,3124207,3124367,3124742,3124933,3125169,3125399	3123162,3123433,3123800,3124035,3124236,3124473,3124761,3124957,3125225,3125911	
chr1	3128176	3133267	3128363	3132547	+	Cre01.g019500.t1.2	Cre01.g019500.t1.2		3128176,3128742,3129523,3130026,3130405,3131185,3131580,3131915,3132385	3128442,3128818,3129853,3130194,3130936,3131316,3131705,3132070,3133267	
chr1	3133273	3139895	3134809	3139195	-	Cre01.g019550.t1.2	Cre01.g019550.t1.2		3139192,3138794,3138296,3137996,3137619,3137188,3133273	3139895,3139043,3138417,3138144,3137862,3137499,3137059	High GC protein of unknown function, ankryin repeat-containing
chr1	3140515	3142885	3141237	3142770	-	Cre01.g019600.t1.2	Cre01.g019600.t1.2		3142622,3142072,3141635,3140515	3142885,3142289,3141726,3141439	
chr1	3143006	3147677	3143124	3147417	+	Cre01.g019650.t1.1	Cre01.g019650.t1.1		3143006,3143373,3143812,3144150,3144540,3145086,3145615,3146366,3147262	3143212,3143579,3143898,3144302,3144921,3145338,3145887,3147125,3147677	
chr1	3147690	3156895	3148157	3156748	-	PAP7	Cre01.g019700.t1.2		3156625,3156247,3155852,3155563,3155123,3154613,3154346,3154111,3153846,3152724,3152429,3150621,3150177,3149083,3147690	3156895,3156468,3155976,3155689,3155200,3154974,3154507,3154234,3153936,3153657,3152603,3152240,3150464,3149967,3148889	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; probably inactive as it lacks the catalytic Asp residues; conserved in green algae with most orthologs showing the catalytic residues; related to MUT68, PAP10 and PAP6
chr1	3156996	3164857	3157206	3164356	+	Cre01.g019750.t1.1	Cre01.g019750.t1.1		3156996,3157496,3157806,3158202,3158377,3158895,3159182,3159560,3160031,3160567,3160987,3161336,3161619,3162319,3162814,3163148,3163814,3164257	3157296,3157593,3157911,3158258,3158493,3158985,3159314,3159661,3160141,3160727,3161057,3161408,3161762,3162446,3162927,3163483,3163861,3164857	
chr1	3169820	3177655	3170555	3177551	-	FTSH3	Cre01.g019850.t1.1		3177311,3177146,3176922,3176415,3175614,3174894,3174453,3173978,3173621,3173279,3172692,3172181,3171819,3171414,3169820	3177655,3177206,3177044,3176632,3175882,3175089,3174626,3174253,3173712,3173368,3172875,3172354,3171944,3171524,3170957	mitochondrial FtsH protease; inner-membrane metalloprotease (M41) exposing catalytic sites to the mitochondrial matrix (m-AAA protease)
chr1	3177710	3182115	3178418	3182008	-	FAP384	Cre01.g019900.t1.2		3181850,3180091,3179679,3179196,3178807,3177710	3182115,3181674,3179895,3179366,3178954,3178540	
chr1	3182426	3186227	3183091	3185233	+	DNJ7	Cre01.g019950.t1.2		3182426,3183567,3183853,3184849	3183157,3183660,3184589,3186227	DnaJ-like protein; probably cytosolic, as judged from absence of N-terminal extension and from homology with cytosolic PSI1 from S. pombe; annotation for PSI1: required for nuclear migration during mitosis and for the normal initiation of translation; Als
chr1	3186967	3193716	3187480	3191669	+	Cre01.g020000.t1.1	Cre01.g020000.t1.1		3186967,3189584,3189933	3189385,3189755,3193716	
chr1	3194207	3199763	3194871	3199430	+	Cre01.g020050.t1.1	Cre01.g020050.t1.1		3194207,3194833,3195192,3195520,3195793,3196158,3196644,3197283,3197544,3197867,3198191,3198492,3198716,3198988,3199304	3194729,3195006,3195366,3195671,3196024,3196516,3197140,3197408,3197690,3198011,3198373,3198584,3198846,3199099,3199763	
chr1	3199921	3211156	3200680	3210378	-	Cre01.g020100.t1.1	Cre01.g020100.t1.1		3209466,3207334,3203803,3201783,3201127,3199921	3211156,3209247,3207122,3203727,3201516,3200959	
chr1	3212041	3214946	3214325	3214527	-	Cre01.g020141.t1.1	Cre01.g020141.t1.1		3212041	3214946	
chr1	3215021	3220206	3215958	3219621	-	Cre01.g020182.t1.1	Cre01.g020182.t1.1		3219921,3217880,3217358,3216936,3216523,3216254,3215021	3220206,3219714,3217589,3216999,3216573,3216328,3216000	
chr1	3224421	3235846	3225380	3235300	-	FUM2	Cre01.g020223.t1.1		3235535,3234508,3234214,3233604,3231450,3229809,3229166,3228912,3228309,3227731,3227077,3226285,3224421	3235846,3235337,3234248,3233793,3231616,3230121,3229282,3229011,3228457,3227832,3227121,3226516,3225574	
chr1	3236187	3242578	3236234	3241894	+	ATG6	Cre01.g020264.t1.1		3236187,3236747,3237840,3238402,3238971,3239315,3239722,3240127,3240633,3241206,3241601,3241834	3236427,3237540,3237899,3238724,3239064,3239466,3239848,3240231,3240726,3241336,3241639,3242578	Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II; Complex I is essential in autophagy, Complex II is required for vacuolar protein sorting;  ortholog of higher eukaryote gene Beclin 1
chr1	3242601	3249966	3243211	3249265	-	SDH4	Cre01.g020305.t1.1		3249824,3249675,3249537,3249222,3242601	3249966,3249737,3249568,3249333,3243351	Succinate dehydrogenase (Complex II) subunit D, probably mitochondrial; subunit 4 of mitochondrial electron transport chain complex II (succinate dehydrogenase EC 1.3.99.1) [PMID: 15710684]; linked to SDH3
chr1	3250067	3251938	3250126	3251233	+	SDH3	Cre01.g020350.t1.2		3250067,3250314,3250530,3250952	3250233,3250410,3250656,3251938	Succinate dehydrogenase cytochrome b56 subunit, mitochondrial precursor (SDHC); PMID: 1571684; linked to SDH4
chr1	3251941	3260116	3252205	3259773	-	Cre01.g020400.t1.2	Cre01.g020400.t1.2		3259747,3259545,3258863,3258038,3257383,3256933,3256321,3255937,3255554,3254996,3254349,3253961,3253500,3253085,3252622,3251941	3260116,3259611,3258955,3258088,3257448,3257085,3256376,3256048,3255646,3255122,3254467,3254026,3253633,3253211,3252774,3252304	
chr1	3260238	3261656	3260675	3261443	-	Cre01.g020450.t1.2	Cre01.g020450.t1.2		3261403,3260986,3260238	3261656,3261092,3260762	
chr1	3261767	3263118	3261889	3262685	+	Cre01.g020500.t1.2	Cre01.g020500.t1.2		3261767,3262248,3262554	3262013,3262316,3263118	
chr1	3263123	3264480	3263828	3264366	-	HSP22D	Cre01.g020575.t1.1		3263123	3264480	small heat shock protein with C-terminal domain containing partial homology with alpha-crystallin domain; N-terminus by TargetP weakly predicted to be chloroplast transit peptide; PMID: 16143837
chr1	3268200	3274506	3268825	3274289	-	Cre01.g020650.t1.1	Cre01.g020650.t1.1		3274234,3273943,3272757,3272338,3271115,3270642,3269855,3269235,3268200	3274506,3274099,3273743,3272432,3272182,3270838,3270427,3269658,3269031	null-allele passenger mutation was isolated (PMID 29743196)
chr1	3275318	3276986	3275929	3276952	-	Cre01.g020701.t1.1	Cre01.g020701.t1.1		3276790,3276639,3275318	3276986,3276725,3276559	
chr1	3277467	3280566	3277604	3279484	+	Cre01.g020750.t1.2	Cre01.g020750.t1.2		3277467,3277991,3278392,3278657,3279080,3279442	3277722,3278133,3278527,3278821,3279255,3280566	
chr1	3281406	3284026	3282150	3283337	-	Cre01.g020751.t1.2	Cre01.g020751.t1.2		3282696,3281406	3284026,3282150	
chr1	3290701	3293226	3291470	3292840	-	Cre01.g020800.t1.2	Cre01.g020800.t1.2		3292809,3292498,3290701	3293226,3292625,3292349	
chr1	3293581	3308756	3295823	3308230	-	CYG49	Cre01.g020850.t1.1		3308060,3307302,3306355,3305422,3304860,3301333,3300897,3300279,3299337,3298909,3298609,3298257,3297665,3297239,3293581	3308756,3307384,3306806,3306120,3305267,3304559,3301080,3300405,3300016,3299038,3298675,3298398,3297805,3297373,3296900	Protein with domain similar to guanylate cyclase [Aedes aegypti]
chr1	3308841	3312526	3309037	3312297	-	Cre01.g020887.t1.2	Cre01.g020887.t1.2		3312087,3311190,3308841	3312526,3311807,3310171	
chr1	3312671	3326776	3313380	3326674	-	PREP1	Cre01.g020918.t1.1		3326587,3326003,3325181,3324344,3324031,3323713,3323305,3323001,3322442,3321841,3321478,3321024,3320510,3320134,3319727,3319050,3318505,3317925,3317291,3316709,3315846,3315292,3314589,3314016,3312671	3326776,3326090,3325357,3324486,3324132,3323826,3323420,3323096,3322547,3322054,3321608,3321221,3320601,3320242,3319849,3319133,3318705,3318060,3317489,3316895,3315902,3315425,3314679,3314167,3313510	Zn metalloprotease, M16C family; Arabidopsis orthologues are dually-targeted to chloroplast and mitochondrion (PMID: 17081117); degrades cTP and mTP cleaved off pre-proteins during organellar import, in a large catalytic chamber (PMID: 16601675)
chr1	3326927	3331608	3327129	3330971	+	Cre01.g020950.t1.2	Cre01.g020950.t1.2		3326927,3327693,3328867,3329458,3329746,3330153,3330607	3327188,3327825,3329151,3329547,3329874,3330313,3331608	
chr1	3331611	3335656	3331880	3335612	-	Cre01.g021000.t1.1	Cre01.g021000.t1.1		3335548,3335340,3335123,3334766,3334431,3334249,3333683,3333087,3331611	3335656,3335422,3335143,3334892,3334575,3334324,3334058,3333415,3332852	
chr1	3335757	3338198	3335893	3337444	+	TIM22A	Cre01.g021050.t1.2		3335757,3336544,3336860,3337358	3336157,3336632,3336999,3338198	Mitochondrial import inner membrane translocase subunit of 22 kDa, belongs to TIM17/TIM22/TIM23 family. Four TIM22-related proteins are present in Arabidopsis, three in Chlamydomonas
chr1	3338341	3346066	3338958	3345944	-	Cre01.g021100.t1.2	Cre01.g021100.t1.2		3345439,3344731,3342466,3341837,3339908,3339481,3338341	3346066,3345149,3344578,3342227,3341670,3339741,3339200	
chr1	3346167	3351867	3346323	3351233	+	Cre01.g021150.t1.1	Cre01.g021150.t1.1		3346167,3346860,3347519,3347859,3348358,3348967,3349652,3350369,3351074	3346502,3347247,3347590,3347936,3348736,3349071,3349668,3350554,3351867	catalyzes the transfer of a methyl group from S-adenosylmethionine to position 5 of the uridine residue at position 54 of tRNAs.
chr1	3346167	3351867	3346323	3351233	+	Cre01.g021150.t2.1	Cre01.g021150.t2.1		3346167,3346860,3347519,3347859,3348358,3348967,3350369,3351074	3346502,3347247,3347590,3347936,3348736,3349067,3350554,3351867	catalyzes the transfer of a methyl group from S-adenosylmethionine to position 5 of the uridine residue at position 54 of tRNAs.
chr1	3352037	3355888	3352082	3355487	+	CGL47	Cre01.g021200.t1.2		3352037,3352230,3352587,3353198,3353486,3354120,3354723,3355102,3355401	3352142,3352304,3352804,3353246,3353938,3354324,3354796,3355222,3355888	Conserved in the Green Lineage
chr1	3355937	3363298	3356011	3362471	+	ARG7	Cre01.g021251.t1.1		3355937,3356199,3356335,3356731,3357221,3358025,3358442,3359082,3359892,3360577,3361050,3361556,3361839,3362351	3356089,3356234,3356466,3356817,3357361,3358145,3358576,3359176,3360085,3360664,3361158,3361640,3361944,3363298	Argininosuccinate lyase (Argininosuccinase). Last enzyme in arginine biosynthetic pathway. arg7 mutants require exogenous arginine. Genetic locus maps to right arm of linkage group I [PMID: 258383; PMID: 17126]
chr1	3363417	3365658	3363595	3365308	+	Cre01.g021300.t1.2	Cre01.g021300.t1.2		3363417,3364212,3364501,3364770,3365131	3363817,3364298,3364571,3364977,3365658	
chr1	3365931	3368586	3366716	3368543	-	Cre01.g021350.t1.2	Cre01.g021350.t1.2		3368500,3368200,3367913,3367645,3367262,3367021,3365931	3368586,3368301,3367969,3367673,3367293,3367048,3366821	
chr1	3368687	3372004	3368810	3371685	+	Cre01.g021400.t1.2	Cre01.g021400.t1.2		3368687,3369174,3369676,3369967,3370220,3370485,3371434	3369004,3369315,3369774,3370050,3370356,3371215,3372004	Pre-mRNA splicing factor, related to the cell cycle control protein CWF25
chr1	3372057	3380502	3372128	3380123	+	TPR4	Cre01.g021450.t2.1		3372057,3372415,3372763,3373144,3373559,3373846,3374722,3375030,3375420,3375809,3376291,3376706,3376958,3377364,3377732,3378263,3378907,3379363,3379877	3372302,3372504,3372870,3373287,3373684,3374355,3374845,3375199,3375533,3375931,3376485,3376806,3377105,3377543,3377959,3378519,3379115,3379526,3380502	TPR protein with similarity to Arabidopsis At4g37460 and rice BAC80093. Predicted chloroplast targeting. ts-lethal mutant was isolated (PMID 29743196)
chr1	3372006	3380502	3372242	3380123	+	TPR4	Cre01.g021450.t1.1		3372006,3372415,3372763,3373144,3373559,3373846,3374722,3375030,3375420,3375809,3376291,3376706,3376958,3377364,3377732,3378263,3378907,3379363,3379877	3372302,3372504,3372870,3373287,3373684,3374355,3374845,3375199,3375533,3375931,3376485,3376806,3377105,3377543,3377959,3378519,3379115,3379526,3380502	TPR protein with similarity to Arabidopsis At4g37460 and rice BAC80093. Predicted chloroplast targeting. ts-lethal mutant was isolated (PMID 29743196)
chr1	3372057	3380502	3372128	3380123	+	TPR4	Cre01.g021450.t3.1		3372057,3372415,3372763,3373559,3373846,3374722,3375030,3375420,3375809,3376291,3376706,3376958,3377364,3377732,3378263,3378907,3379363,3379877	3372302,3372504,3372870,3373684,3374355,3374845,3375199,3375533,3375931,3376485,3376806,3377105,3377543,3377959,3378519,3379115,3379526,3380502	TPR protein with similarity to Arabidopsis At4g37460 and rice BAC80093. Predicted chloroplast targeting. ts-lethal mutant was isolated (PMID 29743196)
chr1	3380697	3386865	3380818	3386457	+	Cre01.g021500.t1.1	Cre01.g021500.t1.1		3380697,3381101,3381334,3381637,3381974,3382458,3382789,3383363,3383777,3384102,3384642,3384946,3385266,3385672,3385994,3386296	3380854,3381203,3381451,3381765,3382109,3382606,3383002,3383500,3383935,3384454,3384760,3385126,3385473,3385763,3386109,3386865	
chr1	3387207	3392988	3387468	3392247	+	Cre01.g021550.t1.1	Cre01.g021550.t1.1		3387207,3387857,3388334,3388641,3389175,3389689,3390477,3390948	3387704,3388056,3388434,3388802,3389561,3390304,3390787,3392988	
chr1	3392991	3397334	3393521	3397231	-	HEL1	Cre01.g021600.t1.2		3397150,3397021,3396824,3396366,3394800,3392991	3397334,3397045,3396909,3396590,3395195,3394580	
chr1	3397437	3399528	3397855	3398831	+	Cre01.g021650.t1.2	Cre01.g021650.t1.2		3397437	3399528	
chr1	3399587	3410349	3399683	3407902	+	CYG36	Cre01.g021700.t1.1		3399587,3399974,3400124,3400323,3400815,3401353,3401941,3406002,3406461,3406735,3406938,3407248,3407809	3399884,3400047,3400208,3400583,3401078,3401746,3405743,3406284,3406519,3406782,3407066,3407508,3410349	Large protein with C-terminal domain similar to guanylate cyclase [Aedes aegypti]
chr1	3410507	3413668	3410642	3413094	+	Cre01.g021750.t1.2	Cre01.g021750.t1.2		3410507,3410850,3411301,3411986,3412545,3412879	3410775,3410993,3411401,3412114,3412611,3413668	
chr1	3413721	3416516	3414616	3416207	-	Cre01.g021800.t1.2	Cre01.g021800.t1.2		3415692,3415145,3413721	3416516,3415346,3414865	
chr1	3416571	3430826	3416818	3430181	-	HEL2	Cre01.g021850.t1.1		3430524,3429016,3428462,3428140,3427729,3427202,3425342,3424963,3424682,3424229,3423891,3422409,3421415,3420853,3420423,3420008,3419345,3418967,3418515,3417897,3417372,3416571	3430826,3430408,3428715,3428226,3427968,3427528,3426871,3425106,3424746,3424343,3424014,3422633,3422234,3420999,3420645,3420138,3419711,3419054,3418660,3417998,3417612,3417150	DEAD box ATP-dependent RNA helicase.  ChromoDB SDG3416
chr1	3430927	3434688	3431269	3434544	+	PUS11	Cre01.g021900.t1.1		3430927,3431688,3432106,3432530,3432864,3433216,3433984	3431536,3431753,3432312,3432610,3433064,3433717,3434688	
chr1	3434698	3465366	3435042	3465281	-	Cre01.g021950.t1.1	Cre01.g021950.t1.1		3465209,3464641,3464119,3463891,3463554,3463164,3462560,3461723,3461179,3460296,3459647,3459252,3458383,3457797,3457477,3456916,3456504,3456134,3455681,3454401,3454043,3453664,3451029,3450665,3447325,3446400,3445686,3445274,3444764,3444047,3443605,3443193,3442545,3434698	3465366,3465040,3464169,3463947,3463621,3463292,3462991,3462382,3461284,3460975,3459945,3459416,3458917,3458186,3457575,3457251,3456758,3456313,3455908,3455525,3454201,3453757,3453478,3450880,3450483,3447154,3446184,3445450,3444946,3444316,3443747,3443346,3442973,3442254	
chr1	3465487	3470828	3465769	3470491	+	Cre01.g022000.t1.1	Cre01.g022000.t1.1		3465487,3465893,3466230,3466498,3466730,3467093,3467709,3468188,3468567,3468944,3469227,3469524,3469806,3470353	3465769,3466066,3466316,3466626,3466898,3467388,3467943,3468384,3468725,3469037,3469365,3469606,3470002,3470828	AAA-type ATPase protein involved in microtubule-severing
chr1	3470897	3472228	3470933	3471905	+	Cre01.g022050.t1.2	Cre01.g022050.t1.2		3470897,3471559,3471898	3471131,3471731,3472228	
chr1	3472236	3482416	3473207	3481766	-	Cre01.g022100.t1.2	Cre01.g022100.t1.2		3481705,3481378,3480714,3480022,3479250,3476935,3476770,3476306,3475934,3475412,3474358,3472236	3482416,3481588,3481005,3480087,3479900,3478983,3476841,3476423,3476107,3475594,3474995,3474164	
chr1	3482679	3488424	3482981	3487553	+	KCN3	Cre01.g022150.t1.1		3482679,3483448,3484331,3484740,3484993,3485342,3485660,3485977,3486329,3486892,3487322	3483312,3483919,3484503,3484812,3485056,3485458,3485776,3486138,3486625,3487053,3488424	Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity
chr1	3488622	3491566	3489587	3491414	-	Cre01.g022200.t1.2	Cre01.g022200.t1.2		3491189,3490803,3490075,3488622	3491566,3490937,3490340,3489771	
chr1	3491654	3494765	3492131	3494582	-	MRPL3	Cre01.g022250.t1.1		3494069,3493650,3493237,3492685,3491654	3494765,3493760,3493383,3492864,3492434	
chr1	3494857	3496777	3494892	3496601	+	Cre01.g022283.t1.1	Cre01.g022283.t1.1		3494857,3495759,3496190,3496601	3495441,3495892,3496447,3496777	
chr1	3494857	3496777	3494892	3496601	+	Cre01.g022283.t2.1	Cre01.g022283.t2.1		3494857,3495759,3496190,3496601	3495441,3495892,3496436,3496777	
chr1	3496781	3505726	3497339	3505585	-	HEL3	Cre01.g022350.t1.2		3503551,3503035,3502634,3501558,3500980,3500537,3499950,3499475,3498830,3497492,3496781	3505726,3503189,3502751,3502190,3501162,3500673,3500202,3499656,3499238,3498555,3497339	
chr1	3505827	3508645	3505945	3508383	+	Cre01.g022400.t1.1	Cre01.g022400.t1.1		3505827,3506145,3507911	3506023,3507640,3508645	
chr1	3508707	3510018	3508929	3509907	+	Cre01.g022450.t1.1	Cre01.g022450.t1.1		3508707,3509117	3509045,3510018	
chr1	3510067	3511738	3510155	3510720	+	Cre01.g022462.t1.2	Cre01.g022462.t1.2		3510067	3511738	
chr1	3511747	3518466	3511911	3517718	-	MME5	Cre01.g022500.t1.2		3517435,3517061,3516503,3516158,3515834,3515286,3514805,3514424,3514058,3513600,3513185,3512582,3511747	3518466,3517247,3516747,3516279,3516004,3515450,3514951,3514542,3514197,3513718,3513313,3512852,3512288	Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); based on similarity to mouse NADP malic enzyme (GenBank AAH80660); likely mitochondrial targeting, based on Target-P prediction and homology
chr1	3518567	3523358	3518699	3523109	+	Cre01.g022550.t1.1	Cre01.g022550.t1.1		3518567,3519182,3519572,3520273,3520524,3520964,3521285,3521590,3521857,3522025,3522503,3522941	3518932,3519309,3519974,3520372,3520715,3521005,3521398,3521646,3521892,3522162,3522571,3523358	
chr1	3523405	3528619	3523537	3528313	+	CGL13	Cre01.g022600.t1.1		3523405,3524308,3524588,3524996,3525297,3525737,3526043,3526275,3526760,3527188,3527632,3528170	3524071,3524344,3524745,3525052,3525470,3525949,3526093,3526567,3526851,3527359,3527981,3528619	
chr1	3523405	3528619	3523537	3528266	+	CGL13	Cre01.g022600.t2.1		3523405,3524308,3524588,3524996,3525297,3525737,3526043,3526275,3526760,3527188,3527632,3528170	3524071,3524344,3524745,3525052,3525470,3525949,3526093,3526567,3526851,3527359,3527749,3528619	
chr1	3528758	3532462	3529422	3532373	-	Cre01.g022650.t1.2	Cre01.g022650.t1.2		3532322,3531993,3531776,3531482,3531116,3530621,3530125,3529755,3528758	3532462,3532244,3531855,3531586,3531233,3530761,3530319,3529877,3529539	
chr1	3532607	3533728	3533020	3533441	+	Cre01.g022666.t1.1	Cre01.g022666.t1.1		3532607,3533273	3533059,3533728	
chr1	3533847	3535793	3533941	3534983	+	Cre01.g022681.t1.1	Cre01.g022681.t1.1		3533847,3534225,3534513,3534819	3533947,3534287,3534588,3535793	
chr1	3533847	3535793	3533941	3534983	+	Cre01.g022681.t2.1	Cre01.g022681.t2.1		3533847,3534225,3534513,3534819	3533947,3534275,3534588,3535793	
chr1	3535915	3543996	3537578	3543206	-	Cre01.g022700.t1.1	Cre01.g022700.t1.1		3543616,3540943,3538899,3538337,3535915	3543996,3543228,3540790,3538784,3538147	
chr1	3544130	3553206	3544628	3553136	-	FAP159	Cre01.g022750.t1.1		3551885,3551459,3551016,3550609,3544130	3553206,3551651,3551205,3550859,3550477	Flagellar Associated Protein with leucine-rich repeats, found in the flagellar proteome
chr1	3553254	3556436	3553996	3555949	-	Cre01.g022800.t1.1	Cre01.g022800.t1.1		3555502,3555020,3554400,3553254	3556436,3555228,3554907,3554200	
chr1	3556906	3564242	3557192	3563890	+	Cre01.g022850.t1.2	Cre01.g022850.t1.2		3556906,3562164,3562957	3561998,3562820,3564242	
chr1	3564287	3572945	3566331	3572916	-	Cre01.g022900.t1.1	Cre01.g022900.t1.1		3570975,3570623,3570335,3569977,3569648,3569246,3568832,3568479,3567915,3564287	3572945,3570787,3570441,3570076,3569769,3569501,3569016,3568559,3568231,3567779	
chr1	3573010	3576065	3574152	3575800	-	Cre01.g022950.t1.2	Cre01.g022950.t1.2		3575773,3575558,3575288,3573010	3576065,3575634,3575433,3575114	
chr1	3576115	3582705	3577848	3582294	-	PHT1	Cre01.g023000.t1.1		3581910,3581568,3581205,3580659,3579897,3579569,3579268,3578681,3578292,3576115	3582705,3581629,3581231,3580885,3580201,3579680,3579380,3578875,3578393,3577965	putative Na+-dependent inorganic phosphate cotransporter
chr1	3582806	3586829	3583087	3586177	+	UBX2	Cre01.g023050.t1.2		3582806,3583571,3583838,3584362,3584599,3585111,3585461,3585792,3586057	3583201,3583615,3583900,3584409,3584688,3585169,3585524,3585908,3586829	
chr1	3586876	3589397	3586926	3589372	+	Cre01.g023100.t1.1	Cre01.g023100.t1.1		3586876,3587208,3587353,3587901,3588300,3588570,3588969,3589324	3587108,3587268,3587562,3588040,3588379,3588724,3589247,3589397	null-allele mutant was isolated (PMID 29743196)
chr1	3589400	3596115	3590481	3595895	-	MCM5	Cre01.g023150.t1.2		3595879,3595645,3595291,3594901,3594524,3594107,3593670,3593290,3592902,3592557,3592249,3591845,3591416,3590990,3589400	3596115,3595807,3595405,3594984,3594649,3594322,3593798,3593393,3593046,3592727,3592368,3592030,3591670,3591214,3590682	homology to MCM5 DNA replication protein
chr1	3596696	3599808	3596924	3599305	+	Cre01.g023200.t1.2	Cre01.g023200.t1.2		3596696,3597400,3597580,3597951,3598240,3598541,3599103	3597007,3597412,3597763,3598021,3598335,3598833,3599808	
chr1	3599810	3609525	3600359	3609353	-	Cre01.g023250.t1.1	Cre01.g023250.t1.1		3609314,3608878,3608321,3607871,3607437,3607031,3606701,3606281,3605868,3605417,3604852,3604566,3604300,3601161,3600896,3600540,3599810	3609525,3609065,3608390,3607944,3607495,3607217,3606732,3606391,3606017,3605465,3605027,3604617,3604357,3601226,3600934,3600656,3600428	
chr1	3610040	3616615	3610894	3615520	-	Cre01.g023300.t1.2	Cre01.g023300.t1.2		3616270,3615764,3615449,3615132,3614529,3614006,3613647,3612747,3612275,3611586,3610040	3616615,3615833,3615533,3615206,3614634,3614181,3613754,3612897,3612373,3611726,3611182	
chr1	3619130	3628725	3619832	3628531	-	THO2	Cre01.g023350.t1.1		3628477,3627969,3627536,3627026,3626227,3625409,3625033,3624588,3624191,3623667,3623286,3622925,3622383,3621932,3621621,3621207,3620718,3620155,3619130	3628725,3628088,3627586,3627166,3626331,3625537,3625140,3624747,3624296,3623769,3623417,3623010,3622506,3622012,3621699,3621292,3620846,3620265,3619937	belongs to M3 family of metalloproteases, like thimet oligopeptidase; most similar to eubacterial homologues; probably cytosolic
chr1	3629416	3634034	3629698	3633279	+	Cre01.g023400.t1.1	Cre01.g023400.t1.1		3629416,3630553,3630869,3631206,3631627,3631953,3632324,3632732,3633066	3630150,3630638,3631020,3631361,3631716,3632078,3632569,3632872,3634034	
chr1	3634258	3638015	3634957	3637936	-	Cre01.g023450.t1.2	Cre01.g023450.t1.2		3637921,3634258	3638015,3637861	
chr1	3638070	3643125	3638881	3643070	-	Cre01.g023500.t1.2	Cre01.g023500.t1.2		3638070	3643125	
chr1	3643180	3661345	3643593	3661148	-	FAP234	Cre01.g023550.t1.1		3661129,3660939,3660710,3660322,3659847,3659232,3658839,3658237,3657889,3657552,3657059,3656127,3655591,3655128,3654661,3653959,3653393,3652898,3652435,3652011,3651530,3651177,3650650,3650035,3649476,3649001,3648699,3648221,3647609,3647074,3646547,3645878,3645296,3644483,3644038,3643180	3661345,3661042,3660763,3660405,3659939,3659405,3658963,3658390,3658057,3657694,3657155,3656208,3655777,3655364,3654839,3654198,3653560,3652997,3652608,3652132,3651654,3651285,3650796,3650156,3649553,3649212,3648751,3648365,3647648,3647237,3646687,3646018,3645466,3644915,3644213,3643755	Conserved Flagellar Associated Protein with leucine-rich repeat; found in the flagellar proteome; makes complex with TTLL9 (see FAP267)  (PubMed ID:24196831 Kubo et al. Kamiya 2014) and (PubMed ID:26085508 Kubo et al. Witman 2015);
chr1	3661399	3666675	3661463	3664536	-	Cre01.g023600.t1.2	Cre01.g023600.t1.2		3665887,3665345,3664406,3664143,3663594,3663306,3662740,3662298,3661868,3661399	3666675,3665353,3664572,3664218,3663759,3663372,3663205,3662513,3662068,3661683	
chr1	3668302	3683595	3670355	3683167	-	Cre01.g023650.t1.1	Cre01.g023650.t1.1		3683101,3682265,3681711,3681385,3680928,3680401,3680050,3679312,3678949,3678477,3678216,3677811,3677329,3676941,3676493,3676063,3675359,3668302	3683595,3682602,3681821,3681439,3680971,3680499,3680096,3679429,3679021,3678565,3678312,3677936,3677438,3677016,3676570,3676130,3675606,3675028	
chr1	3684443	3698875	3684952	3698817	-	Cre01.g023750.t1.1	Cre01.g023750.t1.1		3698652,3697878,3697394,3696533,3695700,3695149,3693897,3693339,3692546,3692036,3691491,3690998,3690542,3690245,3689710,3689265,3688466,3688069,3687617,3686683,3685859,3684443	3698875,3698198,3697495,3696642,3696032,3695320,3694838,3693496,3693021,3692160,3691617,3691118,3690644,3690319,3689903,3689334,3688671,3688211,3687702,3687440,3686341,3685340	
chr1	3699196	3701364	3699311	3700874	+	Cre01.g023773.t1.2	Cre01.g023773.t1.2		3699196,3699682,3700005,3700468,3700823	3699516,3699714,3700133,3700544,3701364	
chr1	3701506	3707601	3701730	3706458	+	Cre01.g023787.t1.1	Cre01.g023787.t1.1		3701506,3702536,3702965,3703907,3704555,3705121,3705618,3706279	3702089,3702707,3703050,3704016,3704679,3705223,3705722,3707601	
chr1	3710580	3719595	3711310	3719416	-	Cre01.g023800.t1.1	Cre01.g023800.t1.1		3711964,3710580	3719595,3711586	
chr1	3719696	3722581	3720006	3721532	+	Cre01.g023850.t1.1	Cre01.g023850.t1.1		3719696,3720212,3720530,3720905	3720039,3720347,3720624,3722581	
chr1	3723250	3724655	3723886	3724100	-	Cre01.g023900.t1.1	Cre01.g023900.t1.1		3724631,3724379,3723250	3724655,3724505,3724147	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr1	3724710	3726085	3725395	3725778	-	Cre01.g023913.t1.2	Cre01.g023913.t1.2		3725591,3724710	3726085,3725475	
chr1	3728896	3733422	3729335	3732974	-	Cre01.g023950.t1.1	Cre01.g023950.t1.1		3730834,3730604,3728896	3733422,3730666,3730486	
chr1	3733613	3736886	3733799	3735801	+	Cre01.g024000.t1.1	Cre01.g024000.t1.1		3733613	3736886	
chr1	3737023	3740700	3737424	3739686	+	Cre01.g024050.t1.2	Cre01.g024050.t1.2		3737023,3737754,3738317,3738803,3739147,3739641	3737487,3738091,3738512,3738895,3739404,3740700	
chr1	3740720	3743200	3740827	3743065	-	Cre01.g024100.t1.1	Cre01.g024100.t1.1		3742727,3742381,3742060,3741651,3741394,3740720	3743200,3742496,3742172,3741806,3741449,3741170	
chr1	3743293	3745275	3743394	3744475	+	Cre01.g024150.t1.2	Cre01.g024150.t1.2		3743293	3745275	
chr1	3745583	3748454	3745706	3748093	+	Cre01.g024200.t1.1	Cre01.g024200.t1.1		3745583,3745829,3745976,3746266,3746626,3747059,3747422,3747767	3745737,3745907,3746154,3746339,3746856,3747209,3747514,3748454	
chr1	3748457	3758072	3749719	3757950	-	HEL4	Cre01.g024250.t1.1		3757799,3756872,3756504,3755991,3754518,3753949,3753163,3751609,3748457	3758072,3757323,3756629,3756197,3755546,3754103,3753673,3752988,3751387	
chr1	3758194	3766462	3758254	3766049	-	Cre01.g024251.t1.2	Cre01.g024251.t1.2		3766237,3765696,3765375,3764812,3764482,3764270,3764021,3763656,3763308,3763006,3762651,3762464,3762095,3761688,3761516,3760952,3760603,3760378,3760128,3759643,3759247,3758954,3758620,3758194	3766462,3766061,3765432,3764904,3764592,3764354,3764120,3763849,3763468,3763077,3762836,3762523,3762283,3761928,3761556,3761372,3760790,3760397,3760242,3759995,3759369,3759053,3758724,3758434	
chr1	3766803	3770344	3767363	3769880	+	Cre01.g024300.t1.2	Cre01.g024300.t1.2		3766803,3767665,3767889,3768201,3769010,3769604	3767504,3767729,3767961,3768872,3769438,3770344	
chr1	3770346	3774017	3770834	3773909	-	Cre01.g024350.t1.2	Cre01.g024350.t1.2		3773727,3773443,3773027,3772781,3772455,3771822,3771536,3770346	3774017,3773641,3773365,3772898,3772561,3772079,3771642,3771342	
chr1	3774153	3783474	3774241	3783328	+	TRS85	Cre01.g024400.t1.1		3774153,3774561,3774844,3775115,3775442,3775811,3776012,3776277,3776627,3776909,3777107,3777606,3778028,3778317,3778540,3778780,3779001,3779396,3779826,3780136,3780488,3780823,3781116,3782438,3782746,3783202	3774392,3774652,3774940,3775225,3775619,3775890,3776151,3776449,3776735,3776953,3777475,3777812,3778168,3778424,3778635,3778863,3779222,3779583,3779951,3780266,3780669,3780969,3782348,3782620,3783114,3783474	Expressed Protein. Similar to TRS85, a component of the TRAPP complex, involved in ER to Golgi vesicle transport.
chr1	3783477	3797692	3784162	3797601	-	Cre01.g024500.t1.1	Cre01.g024500.t1.1		3797552,3797381,3797183,3796829,3796677,3796282,3795961,3795340,3795066,3794157,3793960,3793819,3793016,3792671,3791844,3791405,3791159,3790825,3790511,3790100,3789690,3789351,3788900,3788507,3788339,3788074,3787069,3786649,3786269,3785763,3784766,3784352,3783477	3797692,3797472,3797210,3797037,3796722,3796581,3796208,3795780,3795212,3794984,3794065,3793868,3793252,3792877,3792531,3791724,3791272,3791018,3790700,3790390,3789950,3789595,3789249,3788778,3788404,3788254,3787937,3786942,3786481,3786122,3785659,3784612,3784162	
chr1	3797833	3802773	3798567	3801387	+	Cre01.g024550.t1.1	Cre01.g024550.t1.1		3797833,3798359,3799452,3799693,3799837,3800168,3800350,3800584,3800798,3801043,3801267	3798202,3799332,3799578,3799730,3799989,3800216,3800365,3800651,3800940,3801108,3802773	
chr1	3803233	3805577	3803367	3803953	+	Cre01.g024601.t1.1	Cre01.g024601.t1.1		3803233,3803875	3803670,3805577	
chr1	3806263	3819864	3806496	3819229	+	Cre01.g024650.t1.1	Cre01.g024650.t1.1		3806263,3806678,3807216,3807529,3807744,3807924,3808413,3808911,3809110,3809409,3810009,3810347,3810539,3810776,3811111,3811361,3811548,3811748,3811926,3814043,3814224,3814516,3817167,3817372,3817682,3817991,3818259,3818450,3818640,3818875	3806545,3806938,3807367,3807631,3807811,3808281,3808585,3808994,3809272,3809560,3810101,3810418,3810668,3810944,3811193,3811439,3811624,3811836,3813951,3814134,3814376,3816984,3817237,3817543,3817887,3818042,3818319,3818511,3818657,3819864	Contains several carbohydrate binding domains: C-type lectin, PAN/APPLE-like and a C-terminal serine/threonine protein kinase domain; null-allele mutant was isolated (PMID 29743196)
chr1	3819867	3832452	3820886	3832103	-	Cre01.g024750.t1.1	Cre01.g024750.t1.1		3832209,3831868,3831414,3830797,3830383,3830095,3829874,3829706,3829402,3828849,3828711,3828383,3828158,3827879,3827723,3825617,3825367,3825103,3822648,3822433,3822118,3821790,3821633,3821338,3819867	3832452,3832137,3831668,3831252,3830572,3830161,3829961,3829795,3829583,3829101,3828761,3828569,3828237,3828031,3827811,3827633,3825458,3825255,3824969,3822536,3822289,3821995,3821684,3821398,3821221	null-allele passenger mutation was isolated (PMID 29743196)
chr1	3832523	3845462	3833603	3845325	-	Cre01.g024800.t1.1	Cre01.g024800.t1.1		3845252,3844453,3843877,3843597,3843391,3843154,3842780,3842380,3842093,3841777,3841610,3841297,3841094,3840807,3840623,3838668,3838355,3838144,3837870,3835315,3835068,3834802,3834496,3834339,3834092,3832523	3845462,3844983,3844344,3843728,3843448,3843229,3842951,3842564,3842227,3841879,3841660,3841465,3841185,3840962,3840711,3840511,3838527,3838235,3838019,3837624,3835171,3834973,3834701,3834390,3834152,3833974	
chr1	3846103	3847714	3846208	3846936	+	RDP2	Cre01.g024850.t1.1		3846103,3846351,3846526,3846738	3846283,3846371,3846639,3847714	
chr1	3847773	3852874	3848052	3851462	+	Cre01.g024900.t1.1	Cre01.g024900.t1.1		3847773,3848400,3848530,3848717,3849303,3850187	3848113,3848437,3848578,3849199,3850054,3852874	
chr1	3853192	3858632	3853794	3858573	-	Cre01.g024950.t1.2	Cre01.g024950.t1.2		3858387,3858100,3857871,3857434,3857117,3856909,3856615,3856237,3855844,3855501,3855278,3855040,3854770,3854403,3854096,3853192	3858632,3858273,3857951,3857644,3857205,3856995,3856749,3856449,3856113,3855619,3855384,3855182,3854907,3854596,3854229,3854000	
chr1	3858743	3861424	3858803	3861071	+	SSA12	Cre01.g025000.t1.2		3858743,3859106,3859321,3859572,3859869,3860125,3860467,3860738	3858958,3859180,3859419,3859653,3859955,3860311,3860609,3861424	Expressed protein of unknown function, conserved only in ciliated organisms; identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr1	3861533	3863514	3861906	3862300	+	Cre01.g025025.t1.1	Cre01.g025025.t1.1		3861533,3861892	3861781,3863514	
chr1	3863943	3869649	3865025	3867918	+	Cre01.g025050.t1.2	Cre01.g025050.t1.2		3863943,3864981,3865262,3865558,3865777,3866125,3867661	3864687,3865138,3865407,3865648,3866024,3867504,3869649	
chr1	3870123	3873894	3870614	3873355	+	Cre01.g025100.t1.1	Cre01.g025100.t1.1		3870123,3870613,3870798,3871055,3871364,3871805,3872046,3872428,3872808,3873095	3870441,3870672,3870875,3871140,3871519,3871904,3872234,3872630,3872955,3873894	
chr1	3873897	3877242	3874387	3877074	-	CPLD15	Cre01.g025150.t1.2		3877013,3876737,3876518,3876233,3876011,3875588,3875198,3874790,3873897	3877242,3876847,3876579,3876354,3876071,3875849,3875367,3874928,3874545	Conserved in the Plant Lineage and Diatoms
chr1	3877297	3882212	3878436	3881978	-	MMP4	Cre01.g025200.t1.2		3882128,3881932,3881359,3880808,3880544,3880284,3879897,3879699,3879475,3879181,3878668,3877297	3882212,3882006,3881711,3881176,3880604,3880329,3880071,3879742,3879562,3879270,3879003,3878502	Conserved organelle protein with lipase active site
chr1	3882404	3886852	3882957	3886705	-	RFK2	Cre01.g025250.t1.1		3886570,3886445,3886260,3885826,3885496,3884982,3884694,3884511,3884025,3883826,3883467,3882404	3886852,3886504,3886361,3885913,3885601,3885066,3884768,3884543,3884185,3883883,3883586,3883107	biosynthesis of FMN from riboflavin and ATP
chr1	3886907	3890082	3887197	3889945	-	RAD51B	Cre01.g025300.t1.1		3889942,3889812,3889527,3889229,3888950,3888714,3888429,3888139,3887911,3887626,3887404,3886907	3890082,3889880,3889652,3889294,3889083,3888774,3888581,3888303,3887985,3887781,3887472,3887299	similar to RAD51 which forms nucleoprotein filament for strand invasion; homologous to RecA ATPase
chr1	3890195	3892402	3890644	3892051	-	FAP235	Cre01.g025350.t1.2		3892027,3891820,3891591,3891442,3890945,3890195	3892402,3891915,3891657,3891494,3891238,3890680	Flagellar Associated Protein, found in the flagellar proteome
chr1	3892466	3910702	3892830	3910538	-	HYDIN	Cre01.g025400.t1.2		3910427,3910227,3909854,3908198,3907641,3907072,3906531,3906139,3903473,3903092,3899902,3899505,3899241,3895730,3893953,3892466	3910702,3910340,3909976,3909609,3907968,3907358,3906814,3906283,3905939,3903283,3902931,3899775,3899385,3899029,3895557,3893806	hydrocephalus-inducing protein homolog, forms extension C2b of axonemal central pair
chr1	3911197	3914171	3911600	3913930	-	DRC9	Cre01.g025450.t1.2		3913834,3913457,3913159,3912671,3912371,3912016,3911197	3914171,3913678,3913257,3912889,3912511,3912192,3911867	Flagellar Associated Protein, found in the flagellar proteome; phosphorylation characterized by Boesger et al. (29) [PMID: 19429781]
chr1	3914226	3919091	3914318	3918606	-	Cre01.g025500.t1.1	Cre01.g025500.t1.1		3918413,3918165,3917658,3917298,3916765,3916432,3916103,3915687,3915359,3914716,3914226	3919091,3918241,3917800,3917454,3916942,3916530,3916242,3915848,3915549,3915124,3914570	
chr1	3919212	3927621	3919464	3927426	-	Cre01.g025551.t1.1	Cre01.g025551.t1.1		3927315,3926622,3926133,3924899,3924296,3920664,3919212	3927621,3927051,3926329,3925973,3924684,3924011,3920481	
chr1	3927742	3930236	3927936	3929979	+	Cre01.g025600.t1.2	Cre01.g025600.t1.2		3927742,3929832	3929571,3930236	
chr1	3930622	3932963	3930763	3931986	+	Cre01.g025650.t1.2	Cre01.g025650.t1.2		3930622,3931571	3930996,3932963	
chr1	3932976	3945541	3934273	3945311	-	Cre01.g025700.t1.1	Cre01.g025700.t1.1		3945197,3944836,3944403,3944178,3943921,3943540,3943102,3942699,3942394,3942086,3941808,3941400,3941080,3940649,3940355,3940147,3939868,3935558,3932976	3945541,3944949,3944516,3944236,3943993,3943687,3943241,3942815,3942546,3942170,3941879,3941568,3941226,3940934,3940456,3940215,3939971,3939706,3935285	null-allele passenger mutation was isolated (PMID 29743196)
chr1	3945686	3949181	3947821	3948699	-	Cre01.g025726.t1.1	Cre01.g025726.t1.1		3948695,3948501,3948108,3945686	3949181,3948580,3948144,3947871	
chr1	3949840	3955961	3950212	3955714	-	Cre01.g025750.t1.1	Cre01.g025750.t1.1		3955667,3955297,3955062,3954792,3954272,3953932,3953702,3953369,3952708,3952375,3952140,3951672,3951372,3951185,3950752,3950541,3949840	3955961,3955342,3955140,3954827,3954374,3953986,3953761,3953443,3952745,3952507,3952187,3951803,3951441,3951255,3950877,3950592,3950373	
chr1	3956046	3966421	3956263	3966288	-	Cre01.g025767.t1.2	Cre01.g025767.t1.2		3966195,3965865,3965699,3965402,3964973,3964683,3964418,3962141,3961836,3956046	3966421,3966092,3965763,3965523,3965303,3964853,3964534,3964317,3962007,3961658	null-allele mutant was isolated (PMID 29743196)
chr1	3966522	3970858	3966548	3970697	+	Cre01.g025808.t1.1	Cre01.g025808.t1.1		3966522,3969215	3969101,3970858	
chr1	3971638	3980621	3973430	3980433	-	INO	Cre01.g025850.t1.2		3980342,3980183,3975592,3975335,3974862,3974379,3973984,3971638	3980621,3980243,3979894,3975454,3974995,3974547,3974055,3973673	
chr1	3981014	3986531	3981623	3986265	-	Cre01.g025900.t1.2	Cre01.g025900.t1.2		3986090,3985619,3984869,3984318,3983722,3983139,3982673,3982199,3981014	3986531,3985695,3984944,3984425,3983835,3983332,3982828,3982343,3981826	
chr1	3986727	3997431	3987675	3997360	-	PPR8	Cre01.g025950.t1.2		3996651,3996275,3995787,3995433,3994791,3994392,3993936,3993616,3993210,3992968,3992525,3991522,3991292,3990949,3990626,3990213,3989857,3989251,3988625,3987768,3986727	3997431,3996383,3995874,3995582,3995156,3994502,3994058,3993696,3993335,3993104,3992711,3992187,3991357,3991044,3990703,3990314,3989986,3989542,3988972,3988387,3987675	
chr1	3998059	4007551	4001057	4007262	-	Cre01.g025983.t1.1	Cre01.g025983.t1.1		4007255,4006675,4006297,4005344,4004818,4002690,3998059	4007551,4006841,4006449,4005633,4005009,4004390,4001142	
chr1	4008190	4011125	4010783	4010955	-	Cre01.g026016.t1.1	Cre01.g026016.t1.1		4008190	4011125	
chr1	4011180	4015935	4011215	4015269	-	Cre01.g026050.t1.1	Cre01.g026050.t1.1		4015495,4015229,4011908,4011180	4015935,4015288,4014856,4011709	
chr1	4016007	4018785	4017063	4018657	-	XRP14	Cre01.g026100.t1.2		4018637,4018516,4018305,4018176,4017909,4017546,4016007	4018785,4018568,4018394,4018240,4017981,4017625,4017114	Involved in tRNA 5'-end maturation
chr1	4016007	4018785	4017063	4018657	-	RPP14	Cre01.g026100.t2.1		4018637,4018516,4018305,4018176,4017909,4017546,4016007	4018785,4018568,4018394,4018240,4017981,4017625,4017111	Involved in tRNA 5'-end maturation
chr1	4018926	4027207	4019103	4026544	+	Cre01.g026150.t1.1	Cre01.g026150.t1.1		4018926,4019757,4020213,4020762,4021646,4022245,4022988,4023558,4024295,4024923,4025415,4026265	4019434,4019893,4020656,4021053,4021870,4022509,4023073,4024029,4024780,4025093,4025904,4027207	
chr1	4027220	4029425	4027687	4028901	-	PPR9	Cre01.g026200.t1.2		4029353,4028825,4028369,4027975,4027220	4029425,4028965,4028590,4028045,4027771	
chr1	4029480	4035155	4029796	4034891	-	AGA1	Cre01.g026250.t1.2		4034835,4034587,4034248,4033924,4033641,4033278,4032974,4032680,4032195,4031756,4031159,4030732,4030271,4029480	4035155,4034651,4034327,4034031,4033724,4033382,4033093,4032772,4032374,4031955,4031369,4030829,4030547,4030060	alpha-galactosidase (melibiase); belongs to the family GH27 of O-glycosyl hydrolases of clan GH-D; contains ShK domain
chr1	4035266	4043836	4036376	4043419	+	Cre01.g026300.t1.2	Cre01.g026300.t1.2		4035266,4035627,4035858,4036239,4038249,4038528,4038847,4039269,4039506,4039906,4040288,4040569,4040870,4041225,4041543,4042743	4035518,4035667,4035989,4038082,4038369,4038672,4039142,4039360,4039628,4040059,4040401,4040701,4041061,4041372,4042550,4043836	
chr1	4043946	4050197	4044145	4049295	+	Cre01.g026350.t1.1	Cre01.g026350.t1.1		4043946,4044769,4045156,4047029,4049091	4044596,4044984,4046905,4048934,4050197	
chr1	4050246	4053267	4050397	4052801	+	EXS	Cre01.g026400.t1.1		4050246,4050474,4050582,4050952,4051535,4052130,4052309,4052576	4050405,4050516,4050821,4051258,4051888,4052199,4052402,4053267	Involved in the retention of luminal endoplasmic reticulum proteins, affecting glycoprotein processing in the Golgi
chr1	4053272	4056345	4053555	4055553	-	SRS1	Cre01.g026450.t1.2		4056263,4055514,4055274,4055083,4054885,4054280,4053792,4053272	4056345,4055589,4055342,4055118,4054959,4054770,4054028,4053625	pre-mRNA splicing factor ASF/SF2; contains two RNA recognition motifs (RRM) Alternative splicing factor ASF/SF2 (RRM superfamily)
chr1	4056400	4060645	4057318	4060414	-	ASP3	Cre01.g026500.t1.1		4060203,4059784,4059584,4059269,4059006,4058727,4058419,4058216,4057815,4056400	4060645,4059929,4059710,4059444,4059081,4058851,4058565,4058263,4057988,4057615	Aspartic protease, pepsin (A1) family; directed to secretory pathway
chr1	4060692	4065684	4061100	4065570	-	CCT7	Cre01.g026550.t1.1		4065396,4065187,4064900,4064274,4063629,4063370,4062924,4062554,4062188,4061948,4061644,4061381,4060692	4065684,4065291,4064989,4064417,4063800,4063440,4063085,4062706,4062343,4062025,4061781,4061473,4061268	T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (TCPH); subunit of cytosolic chaperonin complex. ts-lethal mutant was isolated (PMID 29743196)
chr1	4065903	4067835	4066612	4067689	-	UBC11	Cre01.g026600.t1.2		4067635,4067521,4067271,4067116,4066785,4065903	4067835,4067548,4067448,4067199,4066882,4066647	
chr1	4067936	4071177	4068062	4070786	+	Cre01.g026650.t1.2	Cre01.g026650.t1.2		4067936,4068541,4068921,4069189,4069569,4069957,4070210,4070516,4070666	4068280,4068687,4068946,4069283,4069697,4070008,4070273,4070558,4071177	null-allele mutant was isolated (PMID 29743196)
chr1	4071180	4077155	4071649	4077016	-	Cre01.g026700.t1.1	Cre01.g026700.t1.1		4076523,4076119,4074181,4073073,4072024,4071180	4077155,4076340,4075948,4074055,4072949,4071868	null-allele mutant was isolated (PMID 29743196)
chr1	4077210	4084155	4078064	4083682	-	Cre01.g026750.t1.1	Cre01.g026750.t1.1		4083135,4082786,4080629,4078396,4077210	4084155,4083007,4082618,4080499,4078286	
chr1	4084230	4090395	4084718	4090246	-	Cre01.g026800.t1.1	Cre01.g026800.t1.1		4089714,4089365,4087406,4085156,4084230	4090395,4089586,4089110,4087280,4084931	
chr1	4090460	4097245	4091157	4096400	-	Cre01.g026850.t1.1	Cre01.g026850.t1.1		4097031,4096754,4095859,4095512,4093395,4091476,4090460	4097245,4096830,4096638,4095733,4095354,4093306,4091370	
chr1	4097300	4105469	4097531	4105270	-	SSA14	Cre01.g026900.t1.2		4105055,4104656,4104270,4103990,4103170,4102824,4102467,4102089,4101666,4101323,4100829,4100388,4099586,4097300	4105469,4104800,4104368,4104061,4103319,4102913,4102587,4102208,4101794,4101453,4100944,4100460,4100132,4097531	Kynurenine 3-monooxygenase.  Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA).  Previously annotated as SSA14.  Catalyzes the formatio
chr1	4097300	4105469	4097794	4105270	-	SSA14	Cre01.g026900.t2.1		4105055,4104656,4104270,4103990,4103170,4102824,4102467,4102089,4101666,4101323,4100829,4100388,4099372,4097300	4105469,4104800,4104368,4104061,4103319,4102913,4102587,4102208,4101794,4101453,4100944,4100460,4100132,4097794	Kynurenine 3-monooxygenase.  Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA).  Previously annotated as SSA14.  Catalyzes the formatio
chr1	4105590	4111645	4106463	4111402	-	Cre01.g026950.t1.2	Cre01.g026950.t1.2		4110281,4107573,4107190,4105590	4111645,4110141,4107377,4106899	
chr1	4112494	4114965	4112553	4114824	-	RPL11	Cre01.g027000.t1.2		4114821,4114642,4114352,4114120,4113896,4112773,4112494	4114965,4114743,4114486,4114186,4113958,4112887,4112605	Cytosolic 60S large ribosomal subunit protein L11
chr1	4115295	4117035	4115703	4116906	-	Cre01.g027050.t1.1	Cre01.g027050.t1.1		4116873,4116504,4116232,4115975,4115295	4117035,4116608,4116315,4116079,4115817	
chr1	4117136	4119389	4117339	4118937	+	IMP2	Cre01.g027100.t1.2		4117136,4117931,4118473,4118802	4117557,4118033,4118538,4119389	serine protease (S26A family); type I signal peptidase; processes a subset of mitochondrion-imported proteins as they are translocated through the inner membrane into the intermembrane space
chr1	4119436	4129787	4119439	4128652	+	HEL5	Cre01.g027150.t1.1		4119436,4120155,4120763,4121240,4121696,4122231,4122627,4123059,4123358,4123919,4124197,4124703,4125041,4125422,4125691,4126304,4126799,4127287,4127615,4128017,4128437	4119819,4120434,4120937,4121298,4121830,4122455,4122833,4123165,4123494,4124026,4124371,4124823,4125193,4125472,4126066,4126527,4126891,4127376,4127719,4128182,4129787	DEAD/DEAH-box helicase, possibly plastid targeted
chr1	4129937	4133112	4131427	4132847	-	UBC12	Cre01.g027200.t1.2		4132965,4132768,4132513,4132358,4131849,4129937	4133112,4132847,4132627,4132410,4131977,4131594	
chr1	4133236	4139757	4133324	4139423	+	Cre01.g027250.t1.2	Cre01.g027250.t1.2		4133236,4133564,4133911,4134344,4134687,4135009,4135513,4135850,4136101,4136934,4137254,4137505,4137790,4138626,4139099	4133411,4133680,4133973,4134470,4134754,4135098,4135643,4135955,4136362,4137023,4137440,4137531,4138203,4138860,4139757	
chr1	4139804	4141687	4140223	4141183	+	Cre01.g027300.t1.1	Cre01.g027300.t1.1		4139804,4140122,4140403	4140017,4140298,4141687	
chr1	4141820	4158225	4142893	4158115	-	Cre01.g027350.t1.2	Cre01.g027350.t1.2		4157896,4157607,4157017,4156574,4155823,4155440,4154866,4154462,4153924,4153289,4152360,4151759,4151387,4151036,4150356,4150016,4149397,4148438,4147949,4147618,4146867,4146446,4146109,4145785,4145515,4145026,4144674,4144241,4143991,4143512,4141820	4158225,4157691,4157352,4156768,4156139,4155607,4155141,4154629,4154063,4153482,4152516,4152209,4151576,4151253,4150847,4150201,4149604,4149147,4148042,4147775,4147041,4146515,4146203,4145846,4145592,4145321,4144737,4144362,4144059,4143626,4143073	
chr1	4141820	4158225	4142893	4158115	-	Cre01.g027350.t2.1	Cre01.g027350.t2.1		4157896,4157607,4157017,4156574,4155823,4155440,4154866,4154462,4153924,4153289,4152360,4151759,4151387,4151036,4150356,4150016,4149397,4148438,4147949,4147618,4146867,4146446,4146109,4145785,4145515,4145026,4144674,4144241,4143991,4143512,4141820	4158225,4157691,4157349,4156768,4156139,4155607,4155141,4154629,4154063,4153482,4152516,4152209,4151576,4151253,4150847,4150201,4149604,4149147,4148042,4147775,4147041,4146515,4146203,4145846,4145592,4145321,4144737,4144362,4144059,4143626,4143073	
chr1	4141820	4158225	4142893	4158115	-	Cre01.g027350.t3.1	Cre01.g027350.t3.1		4157896,4157607,4157017,4156574,4155823,4155440,4154866,4154462,4153924,4153289,4152360,4151759,4151387,4151036,4150356,4150016,4149397,4148438,4147949,4147618,4146867,4146446,4146109,4145785,4145515,4145026,4144674,4144241,4143991,4143512,4141820	4158225,4157691,4157349,4156768,4156139,4155607,4155141,4154629,4154063,4153482,4152516,4152209,4151576,4151250,4150847,4150201,4149604,4149147,4148042,4147775,4147041,4146515,4146203,4145846,4145592,4145321,4144737,4144362,4144059,4143626,4143073	
chr1	4158336	4163717	4158599	4163478	+	Cre01.g027400.t1.1	Cre01.g027400.t1.1		4158336,4158828,4159245,4159871,4160183,4160353,4160797,4161123,4161405,4161906,4163031,4163291	4158740,4159118,4159729,4160027,4160245,4160619,4161009,4161268,4161789,4162813,4163120,4163717	
chr1	4158336	4163237	4158599	4163206	+	Cre01.g027400.t2.1	Cre01.g027400.t2.1		4158336,4158828,4159245,4159871,4160183,4160353,4160797,4161123,4161405,4161906,4163031	4158740,4159118,4159729,4160027,4160245,4160619,4161009,4161268,4161789,4162813,4163237	
chr1	4163240	4165425	4164006	4165256	-	TRX10	Cre01.g027450.t1.2		4165169,4164888,4164702,4164536,4164222,4163240	4165425,4164989,4164727,4164587,4164278,4164120	Unusual thioredoxin containing an unusual active site WCTKC (classically thioredoxins contain a WCGPC or WCPPC active site).
chr1	4165556	4167287	4165613	4166797	+	Cre01.g027500.t1.1	Cre01.g027500.t1.1		4165556,4166140,4166588	4165766,4166254,4167287	
chr1	4167300	4171523	4168036	4171502	-	Cre01.g027550.t1.1	Cre01.g027550.t1.1		4171403,4171006,4170601,4170071,4169631,4169168,4168880,4168387,4167300	4171523,4171112,4170691,4170241,4169694,4169363,4168971,4168580,4168168	May contain additional coding sequence PMID: 27175017
chr1	4171668	4172262	4171752	4172132	-	Cre01.g027575.t1.1	Cre01.g027575.t1.1		4171799,4171668	4172262,4171758	
chr1	4172403	4177970	4172591	4177728	+	Cre01.g027600.t1.1	Cre01.g027600.t1.1		4172403,4172757,4174803,4175823,4176101,4176429,4177518	4172663,4174694,4175585,4175873,4176193,4177100,4177970	
chr1	4177977	4184472	4178357	4184367	-	Cre01.g027650.t1.2	Cre01.g027650.t1.2		4177977	4184472	
chr1	4184573	4186994	4184667	4186473	+	Cre01.g027700.t1.2	Cre01.g027700.t1.2		4184573,4185413,4185853	4185201,4185593,4186994	
chr1	4187007	4188382	4187099	4188342	-	MFT7	Cre01.g027750.t1.1		4187933,4187007	4188382,4187533	putative MATE efflux family protein, related to Arabidopsis putative integral membrane protein
chr1	4188437	4195082	4189511	4194967	-	Cre01.g027764.t1.2	Cre01.g027764.t1.2		4194800,4194449,4194057,4193750,4193335,4193023,4192590,4192134,4191826,4191573,4191015,4190515,4188437	4195082,4194482,4194151,4193819,4193495,4193076,4192691,4192259,4191903,4191613,4191293,4190738,4190126	
chr1	4195193	4199464	4195310	4198977	+	ATPVH	Cre01.g027800.t1.2		4195193,4195564,4196000,4196264,4196598,4196931,4197328,4198081,4198508,4198830	4195496,4195666,4196084,4196381,4196759,4197053,4197474,4198341,4198567,4199464	Probable vacuolar ATP synthase subunit H, V-ATPase H subunit, Vacuolar proton pump H subunit
chr1	4199467	4201942	4199698	4201842	-	NUOAF2	Cre01.g027850.t1.1		4201763,4201407,4201108,4200618,4200221,4199936,4199467	4201942,4201645,4201167,4200827,4200308,4200018,4199791	Similar to complex I intermediate-associated protein 3; see NUOAF1
chr1	4202034	4204114	4202160	4204037	+	Cre01.g027900.t1.2	Cre01.g027900.t1.2		4202034,4202370,4202622,4203172,4203490,4203748,4203968	4202195,4202462,4202678,4203258,4203591,4203814,4204114	TB2/DP1, receptor expression-enhancing protein 1/2/3/4
chr1	4204163	4208957	4204356	4208328	+	IFT74	Cre01.g027950.t1.2		4204163,4205117,4205421,4205761,4206189,4206665,4207068,4207441,4207773,4208157	4204830,4205245,4205552,4205874,4206443,4206853,4207244,4207566,4207931,4208957	Component of core of IFT-B particle
chr1	4209043	4212864	4209276	4212207	+	Cre01.g028000.t1.1	Cre01.g028000.t1.1		4209043,4209471,4209775,4210175,4210527,4210921,4211257	4209336,4209629,4209929,4210342,4210656,4211083,4212864	
chr1	4212877	4216442	4213464	4216199	-	Cre01.g028050.t1.2	Cre01.g028050.t1.2		4216123,4214816,4212877	4216442,4215810,4214709	
chr1	4216617	4219682	4217423	4218895	-	Cre01.g028101.t1.1	Cre01.g028101.t1.1		4219369,4219230,4218891,4218583,4218315,4218100,4217720,4216617	4219682,4219265,4219030,4218728,4218337,4218178,4217842,4217552	null-allele passenger mutation was isolated (PMID 29743196)
chr1	4219783	4220735	4219862	4220286	+	CPLD69	Cre01.g028150.t1.2		4219783	4220735	Conserved in the Plant Lineage and Diatoms
chr1	4220737	4226132	4221706	4225996	-	HEL6	Cre01.g028200.t1.1		4225964,4225487,4225081,4224745,4224320,4223938,4223547,4223042,4222403,4221939,4220737	4226132,4225821,4225214,4224927,4224412,4224102,4223764,4223407,4222779,4222172,4221822	homology to Saccharomyces cerevisiae Dbp2p: essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing
chr1	4220737	4226132	4221706	4225996	-	HEL6	Cre01.g028200.t2.1		4225964,4225487,4225081,4224745,4224320,4223938,4223617,4221939,4220737	4226132,4225821,4225214,4224927,4224412,4224102,4223764,4222172,4221822	homology to Saccharomyces cerevisiae Dbp2p: essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing
chr1	4226180	4228882	4226726	4228731	-	GEA1	Cre01.g028250.t1.2		4228592,4228337,4227827,4227272,4226180	4228882,4228455,4228104,4227458,4227020	homology to Saccharomyces cerevisiae Dbp2p: essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing
chr1	4228993	4231614	4229124	4230459	+	Cre01.g028300.t1.2	Cre01.g028300.t1.2		4228993,4229590	4229182,4231614	
chr1	4231664	4236881	4231705	4236433	+	DEG8	Cre01.g028350.t1.1		4231664,4231911,4232335,4232822,4233107,4233602,4234131,4234342,4234682,4234954,4235214,4235806,4236385	4231822,4232071,4232407,4232873,4233219,4233786,4234165,4234413,4234815,4235019,4235346,4235927,4236881	DegP-type protease, thylakoid lumen; one PDZ domain
chr1	4236897	4242272	4237505	4242099	-	DDC1	Cre01.g028400.t1.1		4240332,4239472,4239165,4236897	4242272,4240213,4239311,4238983	Could be involved in the formation of tryptamine by decarboxylation of tryptophan; tryptamine is a substrate of strictosidine synthase, a key enzyme in monoterpene indole alkaloid biosynthesis; a strictosidine synthase homologue is found in Chlamydomonas
chr1	4242347	4247682	4242595	4247002	-	Cre01.g028423.t1.2	Cre01.g028423.t1.2		4247449,4246933,4246470,4246003,4245479,4245160,4244862,4244380,4244004,4243513,4243128,4242347	4247682,4247022,4246583,4246134,4245568,4245270,4244969,4244498,4244123,4243665,4243289,4242854	
chr1	4247910	4253252	4248408	4253180	-	Cre01.g028450.t1.2	Cre01.g028450.t1.2		4253070,4252420,4252115,4251540,4251059,4250667,4250123,4249651,4249257,4248920,4248668,4247910	4253252,4252522,4252220,4251887,4251156,4250819,4250239,4249746,4249358,4248986,4248732,4248459	
chr1	4253301	4258202	4253460	4258061	-	Cre01.g028500.t1.2	Cre01.g028500.t1.2		4257993,4257820,4257450,4257029,4256562,4256254,4255947,4255587,4255120,4254780,4253301	4258202,4257915,4257506,4257125,4256645,4256328,4256035,4255777,4255314,4254988,4254126	
chr1	4258323	4261294	4258449	4260869	+	OTU1	Cre01.g028550.t1.2		4258323,4258815,4259072,4259414,4259648,4260153,4260623	4258722,4258865,4259272,4259461,4259770,4260350,4261294	Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr1	4261297	4264142	4261809	4263940	-	Cre01.g028600.t1.2	Cre01.g028600.t1.2		4263888,4263352,4262783,4262461,4262154,4261297	4264142,4263539,4262943,4262582,4262275,4261959	; 3-oxoacyl-[acyl-carrier-protein] reductase-related protein
chr1	4270013	4279032	4271189	4278926	-	Cre01.g028650.t1.2	Cre01.g028650.t1.2		4278820,4278588,4278129,4277920,4275333,4275031,4274709,4274504,4274236,4273242,4272933,4270013	4279032,4278629,4278316,4277979,4275539,4275120,4274742,4274571,4274347,4274026,4272980,4271885	null-allele passenger mutation was isolated (PMID 29743196)
chr1	4279180	4283051	4279933	4280111	+	Cre01.g028713.t1.1	Cre01.g028713.t1.1		4279180,4279915	4279651,4283051	
chr1	4283113	4284024	4283140	4283438	+	Cre01.g028777.t1.2	Cre01.g028777.t1.2		4283113	4284024	
chr1	4291227	4294002	4292411	4293890	-	Cre01.g028850.t1.2	Cre01.g028850.t1.2		4293860,4293672,4293506,4293314,4292983,4292676,4291227	4294002,4293711,4293569,4293353,4293117,4292816,4292492	
chr1	4294103	4297064	4294195	4296273	+	Cre01.g028900.t1.1	Cre01.g028900.t1.1		4294103,4294515,4294792,4295117,4295535,4295964	4294258,4294571,4294935,4295302,4295591,4297064	
chr1	4297077	4300552	4297840	4300353	-	Cre01.g028950.t1.2	Cre01.g028950.t1.2		4300338,4300161,4299270,4298801,4298528,4298055,4297077	4300552,4300206,4299383,4298944,4298586,4298089,4297892	
chr1	4301353	4303931	4301666	4303449	+	COQD2	Cre01.g029000.t1.2		4301353,4301876,4302382,4302849,4303206	4301678,4302052,4302632,4302942,4303931	UbiE/COQ5 methyltransferase family; possibly functioning in chloroplast
chr1	4304680	4307102	4305273	4306908	-	Cre01.g029050.t1.2	Cre01.g029050.t1.2		4306893,4306710,4306274,4305899,4304680	4307102,4306820,4306429,4306052,4305536	
chr1	4307194	4309414	4307443	4309159	+	Cre01.g029100.t1.2	Cre01.g029100.t1.2		4307194,4307696,4308021,4308362,4308729,4309096	4307515,4307782,4308147,4308489,4308902,4309414	
chr1	4309417	4311992	4309791	4311847	-	DAU1	Cre01.g029150.t1.2		4311629,4311018,4310711,4310404,4309417	4311992,4311431,4310831,4310563,4310177	Outer row dynein assembly protein, ODA7 [PMID: 1719473]; identified by comparative genomics as being present only in organisms having motile (MOT) cilia.  Ortholog of human LRRC5,  mutations in which can result in primary ciliary dyskinesia [PMID: 19944]
chr1	4312133	4321294	4312205	4321155	+	ESP1	Cre01.g029200.t1.1		4312133,4312876,4313167,4313369,4313811,4314003,4314398,4314809,4315458,4315941,4316294,4316577,4318694,4319008,4320426,4320883	4312786,4313059,4313251,4313722,4313902,4314276,4314660,4315349,4315816,4316171,4316469,4318600,4318908,4320264,4320654,4321294	Separase homolog; Protease that cleaves cohesin proteins to initiate anaphase. ts lethal mutations block with multiply replicated DNA in a single nucleus (PMID 25336509)
chr1	4321296	4325362	4322179	4324969	-	AAH1	Cre01.g029250.t1.2		4324803,4324657,4324321,4323950,4323625,4323268,4323004,4322603,4321296	4325362,4324730,4324427,4323989,4323732,4323380,4323086,4322773,4322403	related to phenylalanine hydroxylase and tryptophan monooxygenase, not usually found in angiosperms
chr1	4325646	4327449	4326541	4327391	-	TPIC1	Cre01.g029300.t1.2		4325646	4327449	
chr1	4327587	4334812	4328094	4334101	-	FAP297	Cre01.g029350.t1.2		4334523,4333933,4333626,4333314,4332976,4332551,4332222,4331618,4331243,4330823,4330214,4329781,4329441,4328922,4328500,4327587	4334812,4334325,4333692,4333423,4333089,4332788,4332319,4332064,4331395,4331028,4330697,4329899,4329508,4329193,4328674,4328213	contains WD40 repeats; found in the flagellar proteome [PMID: 15998802]; together with FAP221, FAP46, FAP54, FAP74 and calmodulin, form a single complex in the C1d projection
chr1	4334923	4350481	4335173	4349755	+	Cre01.g029400.t1.2	Cre01.g029400.t1.2		4334923,4336116,4336729,4337229,4338555,4339394,4339672,4340404,4340795,4342065,4342945,4344153,4344724,4345364,4345841,4346205,4346535,4346763,4347249,4347518,4347805,4348138,4348343,4348789	4335804,4336561,4337101,4338142,4338995,4339528,4339955,4340542,4341846,4342700,4343758,4344293,4345200,4345476,4346003,4346327,4346582,4346880,4347292,4347601,4347897,4348144,4348503,4350481	
chr1	4350943	4357623	4351154	4357192	+	Cre01.g029450.t1.1	Cre01.g029450.t1.1		4350943,4351306,4351998,4352536,4352994,4353708,4354130,4354497,4355182,4355583,4355885,4356146,4356512,4356783,4357039	4351211,4351491,4352192,4352673,4353143,4353824,4354228,4354834,4355318,4355714,4355992,4356279,4356596,4356850,4357623	
chr1	4357855	4366252	4358946	4366024	-	CDPKK3	Cre01.g029500.t1.2		4366016,4365565,4365200,4364355,4363950,4363592,4363183,4362798,4361245,4360921,4359992,4357855	4366252,4365750,4365263,4364936,4364192,4363753,4363346,4362870,4362587,4361051,4360707,4359801	null-allele mutant was isolated (PMID 29743196)
chr1	4368468	4375062	4369975	4374690	-	Cre01.g029550.t1.1	Cre01.g029550.t1.1		4374823,4374207,4372609,4370330,4368468	4375062,4374699,4374016,4372426,4370109	
chr1	4375214	4378702	4375742	4378534	-	Cre01.g029600.t1.2	Cre01.g029600.t1.2		4377729,4377263,4377064,4376628,4376239,4375214	4378702,4377377,4377104,4376784,4376409,4375932	
chr1	4378845	4387792	4379218	4387656	-	VPS35	Cre01.g029650.t1.1		4387653,4387477,4386975,4386271,4385856,4385393,4384888,4384543,4383892,4383466,4382905,4382482,4382079,4381370,4380879,4380115,4379654,4378845	4387792,4387575,4387106,4386359,4385946,4385589,4384999,4384611,4383981,4383615,4383122,4382584,4382279,4381810,4381043,4380399,4379821,4379407	Expressed Protein. Similar to VPS35, a component of the Retromer Coat complex involved in endosomal to Golgi trafficking; may still need editing at 3' end due to sequence gap.
chr1	4388403	4390175	4388799	4389525	+	Cre01.g029700.t1.2	Cre01.g029700.t1.2		4388403,4388900,4389298	4388807,4388958,4390175	
chr1	4390588	4398402	4391125	4398217	-	DAAK1	Cre01.g029750.t1.1		4398193,4397985,4397186,4396313,4395403,4394530,4393662,4392778,4391975,4390588	4398402,4398098,4397842,4396972,4396059,4395189,4394276,4393407,4392589,4391737	3 nearly identical repeats of an adenylate kinase domain; corresponds approximately to GI:46518741; reduced in the flagellum of the outer dynein arm oda5 mutant [PMID: 156435].  Previously annotated as two distinct FAKs, but no current evidence for this
chr1	4398502	4402294	4398617	4402161	+	Cre01.g029800.t1.2	Cre01.g029800.t1.2		4398502,4398857,4400327,4400615,4401143	4398674,4400125,4400482,4401006,4402294	
chr1	4402307	4406952	4403111	4406583	-	Cre01.g029850.t1.2	Cre01.g029850.t1.2		4406359,4405748,4405391,4404942,4404624,4404423,4404179,4403855,4403464,4402307	4406952,4405922,4405474,4405183,4404755,4404495,4404292,4404040,4403710,4403233	Serine/Threonine Protein Kinase Homolog 19
chr1	4407053	4416544	4407266	4415267	+	Cre01.g029900.t1.2	Cre01.g029900.t1.2		4407053,4407951,4408346,4408608,4408874,4409087,4409666,4410032,4410383,4410636,4410884,4411738,4412061,4412531,4413688,4413975,4414260,4414575,4415023	4407677,4408162,4408400,4408748,4408970,4409412,4409825,4410253,4410488,4410745,4411598,4411852,4412336,4413449,4413823,4414058,4414336,4414737,4416544	
chr1	4417041	4420842	4418332	4420756	-	Cre01.g029950.t1.2	Cre01.g029950.t1.2		4420207,4419307,4418849,4417041	4420842,4420028,4419157,4418663	
chr1	4420963	4426484	4421592	4426258	+	Cre01.g030000.t1.1	Cre01.g030000.t1.1		4420963,4423127,4423440,4424970,4425288,4425648,4426062	4422885,4423223,4424677,4425050,4425425,4425802,4426484	
chr1	4426773	4428674	4426934	4427747	+	PRPL34	Cre01.g030050.t1.2		4426773,4427235,4427611	4427064,4427343,4428674	imported to chloroplast
chr1	4429093	4442052	4432055	4441707	-	PTK13	Cre01.g030100.t1.1		4441585,4440903,4440166,4437930,4437114,4436119,4435707,4435244,4434964,4434616,4434352,4433798,4433447,4433129,4432926,4432714,4432367,4429093	4442052,4441221,4440741,4439987,4437437,4436963,4435845,4435442,4435013,4434718,4434399,4433916,4433519,4433282,4432960,4432762,4432489,4432161	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr1	4429093	4442052	4432055	4441707	-	PTK13	Cre01.g030100.t2.1		4441585,4440903,4440166,4437930,4437114,4436119,4435707,4435244,4434964,4434616,4434352,4433798,4433447,4433129,4432926,4432714,4432367,4429093	4442052,4441221,4440741,4439987,4437437,4436963,4435842,4435442,4435013,4434718,4434399,4433916,4433519,4433282,4432960,4432762,4432489,4432161	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr1	4442170	4447442	4442724	4447296	-	Cre01.g030150.t1.2	Cre01.g030150.t1.2		4447152,4446985,4446059,4445735,4445349,4444819,4444363,4444069,4443686,4442965,4442170	4447442,4447053,4446871,4445854,4445513,4445132,4444602,4444213,4443789,4443415,4442838	
chr1	4448126	4451832	4448924	4451289	-	FAP6	Cre01.g030200.t1.2		4451195,4451026,4450865,4450685,4450445,4450198,4449886,4449643,4449237,4448126	4451832,4451129,4450963,4450795,4450607,4450379,4450043,4449753,4449396,4449017	conserved expressed protein in flagellar proteome [PMID: 15998802], related to protein phosphatase 2C; chloroplast targeted prediction in Arabidopsis
chr1	4451937	4455332	4452780	4455100	-	Cre01.g030250.t1.2	Cre01.g030250.t1.2		4455052,4454867,4454454,4454111,4453438,4453195,4451937	4455332,4454942,4454657,4454235,4453716,4453242,4453044	
chr1	4455453	4459494	4455509	4458798	+	Cre01.g030300.t1.1	Cre01.g030300.t1.1		4455453,4456047,4456294,4456834,4457101,4457552,4457894,4458369,4458564	4455794,4456097,4456448,4456927,4457417,4457666,4458108,4458453,4459494	
chr1	4455453	4459494	4455509	4458798	+	Cre01.g030300.t2.1	Cre01.g030300.t2.1		4455453,4456294,4456834,4457101,4457552,4457894,4458369,4458564	4455794,4456448,4456927,4457417,4457666,4458108,4458453,4459494	
chr1	4460051	4462934	4461222	4462685	-	CGL41	Cre01.g030350.t1.1		4462593,4462143,4461937,4461590,4460051	4462934,4462219,4462014,4461723,4461312	
chr1	4462987	4466612	4463173	4466305	-	Cre01.g030400.t1.1	Cre01.g030400.t1.1		4466236,4465991,4465840,4465593,4464677,4464320,4462987	4466612,4466076,4465889,4465663,4465499,4464582,4464196	
chr1	4466713	4476204	4466786	4475663	+	Cre01.g030450.t1.1	Cre01.g030450.t1.1		4466713,4467270,4467804,4468083,4468285,4468562,4468900,4469418,4469705,4470881,4471297,4471899,4472339,4473440,4473761,4474623,4475039,4475490	4467095,4467515,4467872,4468145,4468380,4468714,4469230,4469597,4470714,4471087,4471737,4472148,4473260,4473613,4474470,4474747,4475192,4476204	
chr1	4476403	4482784	4477014	4481809	+	CYG58	Cre01.g030500.t1.2		4476403,4477638,4479368,4479707,4479944,4480324,4480601	4477547,4479102,4479578,4479750,4480171,4480432,4482784	
chr1	4482993	4488714	4483125	4487962	+	Cre01.g030550.t1.2	Cre01.g030550.t1.2		4482993,4483876,4484261,4484710,4485030,4485554,4485983,4486248,4486425,4486650,4486982,4487410,4487848	4483239,4483977,4484452,4484768,4485150,4485682,4486033,4486292,4486550,4486731,4487093,4487542,4488714	Ubiquitin-associated protein, contains PUB/PUG domain.  May be a ubiquitin-associated/translation elongation factor, EF1B.  Proteins with PUB/PUG domains are often linked to the ubiquitin-proteasome system
chr1	4488853	4499253	4489180	4497522	+	MAPKKK4	Cre01.g030600.t1.1		4488853,4489446,4489707,4490056,4491271,4491840,4492152,4492770,4493822,4494357,4494607,4494832,4495187,4495358,4495669,4495993,4496178,4496420,4496685,4496848,4497058,4497447	4489363,4489555,4489833,4491032,4491709,4491989,4492586,4493622,4494156,4494460,4494690,4495040,4495207,4495489,4495823,4496065,4496278,4496469,4496719,4496886,4497224,4499253	MAPKKK4; MAP (Mitogen-Activated) Kinase Kinase Kinase Homolog 4; MEK Kinase 4; MAP3K4; null-allele mutant was isolated (PMID 29743196)
chr1	4499257	4504427	4499596	4504002	-	PHR5	Cre01.g030650.t1.2		4503847,4503408,4503050,4502765,4501897,4501661,4501371,4501094,4500931,4500543,4500182,4499257	4504427,4503642,4503179,4502890,4502551,4501748,4501516,4501148,4500983,4500682,4500303,4499974	Deoxyribodipyrimidine photolyase; contains 6-4 DNA-photolyase and FAD binding domains; involved in light-dependent DNA repair.  Putative cryptochrome DASH [PMID: 12535521, PMID: 1617454]
chr1	4504523	4514992	4504611	4512107	+	PTK14	Cre01.g030700.t1.1		4504523,4504866,4505053,4505282,4507397,4508025,4509024,4509297,4509666,4510059,4510332,4510581,4510800,4511096,4511263,4511445,4511666,4512004	4504785,4504975,4505197,4507240,4507871,4508745,4509138,4509481,4509862,4510198,4510404,4510681,4510849,4511130,4511301,4511454,4511785,4514992	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr1	4515097	4522202	4516366	4521915	-	Cre01.g030750.t1.1	Cre01.g030750.t1.1		4521807,4521594,4515097	4522202,4521671,4521472	
chr1	4522349	4528262	4523630	4528128	-	CSN2	Cre01.g030800.t1.2		4528028,4527732,4527263,4526874,4526406,4526063,4525596,4525157,4524885,4524437,4524021,4522349	4528262,4527813,4527340,4526976,4526557,4526192,4525715,4525267,4524994,4524506,4524161,4523762	similar to COP9 signalosome, subunit CSN2
chr1	4528373	4531761	4528481	4530758	+	POA4	Cre01.g030850.t1.2		4528373,4529165,4529800,4530178,4530611	4528617,4529337,4529947,4530338,4531761	20S proteasome alpha subunit D (type 7)
chr1	4531787	4535772	4532044	4535644	-	Cre01.g030900.t1.1	Cre01.g030900.t1.1		4534813,4534371,4533594,4533189,4532603,4531787	4535772,4534619,4534172,4533317,4532683,4532380	
chr1	4535937	4538005	4535978	4537578	+	Cre01.g030950.t1.1	Cre01.g030950.t1.1		4535937,4536139,4536443,4536787,4537031,4537491	4536064,4536202,4536565,4536870,4537117,4538005	
chr1	4538061	4540642	4538723	4540580	-	Cre01.g030968.t1.1	Cre01.g030968.t1.1		4540462,4538061	4540642,4540360	
chr1	4542361	4544452	4543667	4543842	-	Cre01.g030986.t1.1	Cre01.g030986.t1.1		4542361	4544452	
chr1	4544662	4550682	4547343	4550631	-	Cre01.g031004.t1.2	Cre01.g031004.t1.2		4550445,4549860,4549698,4547596,4544662	4550682,4549991,4549771,4549468,4547421	
chr1	4550921	4559082	4551556	4558732	-	Cre01.g031050.t1.2	Cre01.g031050.t1.2		4558558,4558341,4557696,4557096,4556723,4556399,4556129,4555875,4555328,4554938,4554608,4554316,4554031,4553453,4552548,4552235,4550921	4559082,4558445,4557848,4557305,4556876,4556535,4556222,4555978,4555648,4555065,4554737,4554435,4554162,4553911,4553295,4552414,4551774	
chr1	4550921	4558826	4551556	4558732	-	Cre01.g031050.t2.1	Cre01.g031050.t2.1		4558558,4558341,4557696,4557096,4556723,4556399,4556129,4555875,4555328,4554938,4554608,4554316,4554031,4553453,4552548,4552235,4550921	4558826,4558445,4557848,4557305,4556876,4556535,4556222,4555978,4555648,4555065,4554737,4554435,4554162,4553911,4553295,4552414,4551774	
chr1	4559895	4563800	4560587	4563778	-	TEF30	Cre01.g031100.t1.2		4563680,4563578,4563389,4562974,4562740,4562226,4561585,4561195,4560907,4559895	4563800,4563614,4563475,4563081,4562811,4562306,4561761,4561329,4560996,4560707	
chr1	4564172	4567209	4566730	4567028	-	SRP14	Cre01.g031200.t1.2		4564172	4567209	Expressed Protein. Similar to the SRP14 subunit of the Signal Recognition Particle. Involved in ER protein translocation.
chr1	4567301	4569357	4567518	4568750	+	Cre01.g031250.t1.2	Cre01.g031250.t1.2		4567301,4567723,4568241,4568701	4567639,4567782,4568394,4569357	
chr1	4569410	4579081	4569629	4578154	+	CDPK4	Cre01.g031300.t1.1		4569410,4569610,4570050,4570345,4570562,4570966,4571166,4571437,4571816,4572124,4573489,4574278,4575419,4576654,4577091,4577429,4577914	4569515,4569800,4570100,4570395,4570643,4571016,4571232,4571589,4571911,4573294,4573933,4575200,4576348,4576786,4577182,4577584,4579081	
chr1	4579084	4584069	4580188	4583802	-	Cre01.g031350.t1.2	Cre01.g031350.t1.2		4583322,4582454,4581943,4579084	4584069,4583051,4582212,4581495	
chr1	4584740	4586191	4584832	4585790	+	Cre01.g031400.t1.2	Cre01.g031400.t1.2		4584740,4585269,4585747	4584948,4585316,4586191	
chr1	4586199	4590639	4586932	4590195	-	Cre01.g031450.t1.2	Cre01.g031450.t1.2		4590325,4590155,4589829,4589493,4588764,4588175,4587423,4586199	4590639,4590205,4589993,4589546,4589149,4588475,4587941,4587282	
chr1	4590904	4598159	4591985	4598019	-	Cre01.g031500.t1.2	Cre01.g031500.t1.2		4597887,4597615,4597415,4597163,4596881,4596416,4596052,4595741,4595392,4595053,4594752,4594321,4594067,4593691,4593414,4593069,4592606,4592277,4590904	4598159,4597737,4597484,4597220,4596920,4596523,4596191,4595804,4595545,4595175,4594812,4594519,4594138,4593870,4593496,4593159,4592868,4592396,4592064	
chr1	4598214	4602149	4598913	4602063	-	CSB6	Cre01.g031550.t1.1		4601867,4601447,4600962,4600038,4599369,4599152,4598214	4602149,4601659,4601084,4600761,4599885,4599262,4599036	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	4602247	4604173	4602440	4603188	+	Cre01.g031600.t1.2	Cre01.g031600.t1.2		4602247,4602658,4603066	4602521,4602748,4604173	
chr1	4604220	4609073	4604986	4607800	+	CGLD12	Cre01.g031650.t1.1		4604220,4605198,4605374,4605794,4606107,4606320,4606707,4607089,4607453	4605057,4605240,4605589,4605939,4606174,4606520,4606869,4607207,4609073	similar to Def transferase, transferring glycosyl groups (pfam5637, Glyco_transf_34, galactosyl transferase GMA12/MNN1 family). Glycosyltransferases of this family contain a DXD motif
chr1	4609094	4613309	4609612	4613262	-	Cre01.g031700.t1.1	Cre01.g031700.t1.1		4613060,4612863,4612319,4612040,4611676,4611442,4610989,4610296,4610009,4609094	4613309,4612947,4612472,4612080,4611707,4611492,4611088,4610484,4610083,4609787	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr1	4609094	4613309	4609612	4613262	-	Cre01.g031700.t2.1	Cre01.g031700.t2.1		4613060,4612863,4612319,4612040,4611676,4610989,4610296,4610009,4609094	4613309,4612947,4612472,4612080,4611707,4611088,4610484,4610083,4609787	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr1	4609394	4613309	4609612	4613262	-	Cre01.g031700.t3.1	Cre01.g031700.t3.1		4613060,4612863,4612319,4612040,4611676,4610989,4610296,4610009,4609394	4613309,4612947,4612472,4612080,4611707,4611088,4610484,4610083,4609787	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr1	4613510	4615031	4613684	4613955	+	Cre01.g031726.t1.1	Cre01.g031726.t1.1		4613510	4615031	
chr1	4615071	4618659	4615447	4618474	-	Cre01.g031750.t1.2	Cre01.g031750.t1.2		4618212,4617933,4616776,4616177,4615783,4615071	4618659,4618063,4617737,4616372,4615962,4615528	
chr1	4618760	4627721	4618874	4627259	+	Cre01.g031800.t1.1	Cre01.g031800.t1.1		4618760,4619192,4619457,4619758,4620033,4620313,4621855,4622580,4623448,4623695,4623954,4624564,4624864,4625343,4625752,4626171,4626426,4626995	4618979,4619256,4619578,4619789,4620124,4621540,4622371,4623064,4623513,4623788,4624090,4624668,4625017,4625493,4625865,4626249,4626695,4627721	
chr1	4627770	4631275	4627921	4630798	+	Cre01.g031850.t1.1	Cre01.g031850.t1.1		4627770,4628420,4628750,4629086,4629397,4629971,4630567	4628236,4628476,4628854,4629223,4629667,4630314,4631275	1-aminocyclopropane-1-carboxylate deaminase, similar to Trp synthase.  1-aminocyclopropane-1-carboxylate is a key intermediate in the biosynthesis of the plant hormone ethylene.  Used Pyridoxal phosphate a co-factor
chr1	4633256	4634009	4633725	4633921	-	Cre01.g031875.t1.1	Cre01.g031875.t1.1		4633256	4634009	
chr1	4634082	4642299	4634907	4642006	-	Cre01.g031900.t1.1	Cre01.g031900.t1.1		4641983,4640736,4640415,4639768,4639394,4638904,4638332,4637767,4637158,4636643,4636225,4635776,4635277,4634082	4642299,4641806,4640505,4639930,4639488,4639066,4638510,4637954,4637289,4636784,4636353,4635895,4635375,4635012	
chr1	4642355	4652279	4642557	4652247	-	Cre01.g031951.t1.1	Cre01.g031951.t1.1		4652097,4651707,4651395,4651076,4650616,4649997,4649271,4647904,4647206,4645558,4643347,4642355	4652279,4652021,4651521,4651251,4650863,4650471,4649811,4649126,4647861,4647079,4645395,4643139	null-allele mutant was isolated (PMID 29743196)
chr1	4652390	4654771	4652454	4654284	+	Cre01.g032000.t1.1	Cre01.g032000.t1.1		4652390,4652840,4653219,4653618,4653821,4654051,4654233	4652667,4652986,4653407,4653670,4653917,4654116,4654771	
chr1	4654818	4656620	4655024	4656042	+	Cre01.g032050.t1.2	Cre01.g032050.t1.2		4654818	4656620	UAA transporter
chr1	4656736	4658889	4656839	4658119	-	Cre01.g032100.t1.1	Cre01.g032100.t1.1		4658006,4657637,4656736	4658889,4657875,4657426	
chr1	4661005	4663589	4661787	4663316	-	Cre01.g032139.t1.2	Cre01.g032139.t1.2		4663437,4663157,4662915,4662645,4662390,4661005	4663589,4663316,4663008,4662745,4662423,4661787	
chr1	4663710	4670695	4663885	4670273	+	FAP187	Cre01.g032150.t1.1		4663710,4664063,4664558,4665242,4665653,4666024,4666471,4666860,4667171,4667579,4667968,4668300,4668644,4669006,4669238,4669529,4669856	4664005,4664218,4664656,4665438,4665832,4666171,4666598,4666986,4667336,4667739,4668090,4668497,4668789,4669077,4669374,4669656,4670695	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr1	4670870	4681891	4670985	4681593	+	Cre01.g032200.t1.2	Cre01.g032200.t1.2		4670870,4671214,4671666,4672043,4672359,4672632,4672998,4673513,4673902,4674176,4674632,4675119,4676259,4677868,4678407,4678749,4679187,4680037,4680728,4681035,4681401	4671024,4671363,4671748,4672145,4672440,4672719,4673247,4673643,4673997,4674378,4674984,4676111,4677752,4678298,4678639,4679017,4679904,4680563,4680835,4681154,4681891	
chr1	4684120	4688011	4684324	4687325	+	Cre01.g032250.t1.1	Cre01.g032250.t1.1		4684120,4685217,4685646,4685924,4686270,4686669,4687232	4684950,4685318,4685789,4686020,4686469,4686897,4688011	
chr1	4688013	4690979	4688748	4690579	-	GBP1	Cre01.g032300.t1.2		4690437,4690176,4689643,4689081,4688013	4690979,4690222,4689885,4689197,4688865	[PMID: 8062839]
chr1	4691914	4695221	4692680	4695047	-	PIG8	Cre01.g032350.t1.2		4695021,4694876,4694676,4694366,4694046,4693722,4693408,4693019,4691914	4695221,4694954,4694725,4694542,4694107,4693898,4693539,4693144,4692913	induced by p53 in etoposide-treated cells, also known as Ei24 etoposide-induced protein 2.4 (PMID:8649819); candidate tumor suppressor gene coding for an apoptosis factor that is an ER-localized Bcl-2 binding protein (PMID:15781622); in C. reinhardtii, affected by agents known to interfere with p53 (PMID:16678168)
chr1	4695378	4701871	4695444	4701251	+	Cre01.g032400.t1.2	Cre01.g032400.t1.2		4695378,4696077,4696458,4696751,4697254,4697590,4697932,4698269,4698618,4699718,4699909,4700187,4700482,4701074	4695831,4696212,4696507,4696831,4697352,4697682,4698024,4698389,4699378,4699812,4700026,4700291,4700649,4701871	
chr1	4701874	4710119	4702109	4709989	-	Cre01.g032450.t1.2	Cre01.g032450.t1.2		4708691,4708263,4707927,4707635,4707153,4706902,4706618,4706346,4705973,4705759,4705460,4705088,4704610,4704111,4703801,4703579,4703395,4703145,4702851,4702507,4701874	4710119,4708344,4708051,4707784,4707392,4707014,4706730,4706458,4706102,4705806,4705597,4705253,4704752,4704359,4703918,4703664,4703463,4703240,4702957,4702663,4702316	
chr1	4710220	4716241	4710304	4715440	+	DNJ8	Cre01.g032500.t1.2		4710220,4710506,4710894,4711269,4711786,4712132,4712477,4712717,4713076,4713432,4713795,4714154,4714819,4715242	4710350,4710610,4711018,4711309,4711858,4712326,4712527,4712803,4713162,4713527,4713944,4714249,4714959,4716241	DnaJ-like protein; might be targeted to ER, as judged from homology with tomato Q7XYV1, Arabidopsis Q9LYW9, and rice Q6H7Q3, which by TargetP are all predicted to secretory pathway; contains C-terminal J-domain (pfam226) and N-terminal TPR domain (cd1
chr1	4716246	4726829	4716633	4726633	-	CGL127	Cre01.g032550.t1.1		4726474,4726184,4725918,4725672,4725385,4725126,4724903,4724509,4724140,4723766,4723390,4723034,4722814,4722608,4722249,4720975,4720276,4719961,4719648,4719282,4719047,4718725,4718417,4718131,4716816,4716246	4726829,4726297,4726004,4725767,4725467,4725210,4725003,4724761,4724394,4723950,4723610,4723275,4722927,4722658,4722413,4722031,4720816,4720105,4719732,4719499,4719169,4718925,4718575,4718248,4717958,4716656	
chr1	4727299	4731015	4727503	4730689	+	CGL25	Cre01.g032600.t1.1		4727299,4727824,4728132,4728391,4728582,4728852,4729112,4729580,4729948,4730237,4730536	4727666,4728037,4728247,4728458,4728686,4728937,4729407,4729809,4730059,4730403,4731015	GT8 family protein, Conserved in the Green Lineage
chr1	4731076	4734249	4731484	4733887	-	TAL1	Cre01.g032650.t1.2		4733662,4733539,4733112,4732717,4732326,4732077,4731791,4731076	4734249,4733579,4733382,4732887,4732546,4732163,4731863,4731595	EC 2.2.1.2; possible cytosolic isoform, although weak predicted organelle targeting by Target-P; catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate; this enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways
chr1	4731076	4734249	4731484	4733887	-	TAL1	Cre01.g032650.t2.1		4733662,4733539,4733163,4732717,4732326,4732077,4731791,4731076	4734249,4733579,4733382,4732887,4732546,4732163,4731863,4731595	EC 2.2.1.2; possible cytosolic isoform, although weak predicted organelle targeting by Target-P; catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate; this enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways
chr1	4736060	4739601	4736119	4739261	+	GLK1	Cre01.g032700.t1.2		4736060,4736323,4736559,4736941,4737305,4737658,4738027,4738333,4739052	4736236,4736430,4736758,4737040,4737395,4737755,4738122,4738459,4739601	Glucokinase; EC:2.7.1.2; Glucose Kinase; similar to Nostoc glucokinase (GenBank BAB74672); Target-P weakly predicts an organelle target sequence
chr1	4739604	4741147	4740117	4741099	-	Cre01.g032750.t1.2	Cre01.g032750.t1.2		4740993,4740754,4739604	4741147,4740902,4740417	
chr1	4741304	4747361	4741348	4746594	+	MRS6	Cre01.g032800.t1.2		4741304,4741958,4742397,4742902,4743938,4744326,4744724,4745686,4746069,4746375,4746594	4741593,4742033,4742540,4743645,4744039,4744404,4745500,4745807,4746119,4746480,4747361	Homology to CorA, a Mg2+ transporter protein; in yeast, is essential for group II intron splicing in mitochondria in response to Mg2+ (see PMID: 1154418)
chr1	4747410	4760123	4747478	4757513	+	PTK23	Cre01.g032850.t1.1		4747410,4747776,4748138,4748590,4749278,4749607,4750286,4751574,4751921,4752910,4753484,4753838,4754050,4754238,4754504,4754834,4755030,4755360,4755796,4756021,4756289,4756529,4756763,4757027,4757416	4747634,4747882,4748372,4749036,4749376,4750085,4751390,4751642,4752230,4753287,4753602,4753878,4754080,4754321,4754680,4754878,4755129,4755507,4755881,4756121,4756338,4756563,4756801,4757156,4760123	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr1	4760470	4767229	4762412	4764348	+	Cre01.g032900.t1.1	Cre01.g032900.t1.1		4760470,4760802,4762411,4762913,4763347,4763654,4763779,4764066	4760691,4760843,4762629,4763090,4763431,4763695,4763883,4767229	
chr1	4760470	4767229	4762412	4764348	+	Cre01.g032900.t2.1	Cre01.g032900.t2.1		4760470,4760802,4762411,4762913,4763347,4763779,4764066	4760691,4760843,4762629,4763090,4763431,4763883,4767229	
chr1	4760470	4767229	4762412	4764348	+	Cre01.g032900.t3.1	Cre01.g032900.t3.1		4760470,4760802,4761069,4762411,4762913,4763347,4763779,4764066	4760691,4760843,4761110,4762629,4763090,4763431,4763883,4767229	
chr1	4767560	4770103	4767606	4769520	+	Cre01.g032950.t1.2	Cre01.g032950.t1.2		4767560,4767899,4768186,4768574,4768780,4769484	4767796,4767940,4768227,4768618,4768871,4770103	
chr1	4770114	4779379	4771208	4779001	-	FAP334	Cre01.g033000.t1.2		4778983,4778367,4778016,4776256,4775706,4775047,4774415,4773546,4773148,4772737,4772253,4770114	4779379,4778540,4778087,4777706,4775889,4775517,4774771,4774094,4773210,4772841,4772513,4772108	
chr1	4779830	4783595	4780113	4783066	+	Cre01.g033050.t1.1	Cre01.g033050.t1.1		4779830,4780483,4780924,4781411,4781796,4782359,4782874	4780259,4780658,4781053,4781600,4782016,4782608,4783595	
chr1	4783740	4784189	4783833	4784002	+	Cre01.g033071.t1.1	Cre01.g033071.t1.1		4783740	4784189	
chr1	4784347	4797399	4786361	4797093	-	Cre01.g033091.t1.1	Cre01.g033091.t1.1		4796991,4796277,4795782,4794543,4793984,4793616,4793141,4792475,4792031,4790893,4790381,4789883,4784347	4797399,4796575,4796007,4795458,4794083,4793859,4793233,4792753,4792222,4791624,4790683,4790009,4789657	
chr1	4784347	4797399	4786361	4797093	-	Cre01.g033091.t2.1	Cre01.g033091.t2.1		4796991,4796277,4795782,4794543,4793984,4793616,4793141,4792475,4792031,4790893,4790381,4789883,4784347	4797399,4796575,4796007,4795458,4794083,4793859,4793233,4792753,4792222,4791621,4790683,4790009,4789657	
chr1	4784347	4797399	4786361	4797093	-	Cre01.g033091.t3.1	Cre01.g033091.t3.1		4796991,4796277,4795782,4794543,4793984,4793616,4793141,4792475,4792031,4790381,4789883,4784347	4797399,4796575,4796007,4795458,4794083,4793859,4793233,4792753,4792222,4790683,4790009,4789657	
chr1	4797830	4802112	4798054	4801015	+	Cre01.g033150.t1.2	Cre01.g033150.t1.2		4797830,4798432,4798765,4799166,4799505,4799911,4800401,4800848	4798183,4798506,4798869,4799207,4799543,4800055,4800562,4802112	
chr1	4802181	4805649	4802580	4804938	-	Cre01.g033200.t1.2	Cre01.g033200.t1.2		4805379,4804883,4804527,4804184,4803905,4802181	4805649,4805165,4804707,4804306,4803998,4803699	
chr1	4805770	4809757	4805841	4808904	+	Cre01.g033250.t1.2	Cre01.g033250.t1.2		4805770,4806087	4806000,4809757	
chr1	4811180	4814601	4811457	4813979	+	Cre01.g033300.t2.1	Cre01.g033300.t2.1		4811180,4811723,4811866,4812033,4812380,4812715,4813063,4813410,4813802	4811570,4811733,4811900,4812137,4812484,4812837,4813173,4813520,4814601	
chr1	4811030	4814601	4811457	4813979	+	Cre01.g033300.t1.2	Cre01.g033300.t1.2		4811030,4811723,4811866,4812033,4812380,4812715,4813063,4813410,4813802	4811570,4811733,4811900,4812137,4812484,4812837,4813173,4813520,4814601	
chr1	4814604	4822049	4815520	4822010	-	ALD2	Cre01.g033350.t1.2		4821817,4821610,4821223,4820891,4820577,4820135,4819798,4819325,4818789,4818323,4817961,4817602,4817148,4816566,4816044,4814604	4822049,4821740,4821261,4820979,4820715,4820179,4819890,4819417,4818869,4818430,4818055,4817696,4817323,4816794,4816216,4815631	
chr1	4822160	4824281	4822251	4823061	+	TIM9	Cre01.g033400.t1.2		4822160,4822412,4822932	4822343,4822502,4824281	Mitochondrial import inner membrane translocase subunit Tim9. Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane.
chr1	4824350	4828053	4824955	4826687	+	Cre01.g033450.t1.2	Cre01.g033450.t1.2		4824350,4825907,4826606	4825661,4826301,4828053	
chr1	4828100	4831528	4828428	4831111	+	Cre01.g033500.t1.2	Cre01.g033500.t1.2		4828100,4830458,4831030	4829710,4830855,4831528	
chr1	4831554	4835289	4832346	4835199	-	Cre01.g033516.t1.1	Cre01.g033516.t1.1		4835032,4834827,4834349,4833942,4833430,4833003,4831554	4835289,4834896,4834744,4834046,4833779,4833046,4832513	
chr1	4835344	4836159	4835524	4836008	-	Cre01.g033532.t1.1	Cre01.g033532.t1.1		4835860,4835344	4836159,4835652	
chr1	4836270	4840941	4836363	4839784	+	PDI2	Cre01.g033550.t1.2		4836270,4836894,4837196,4837551,4837879,4838190,4838927,4839646	4836475,4836955,4837297,4837611,4837927,4838256,4839100,4840941	
chr1	4865520	4872511	4865876	4872278	+	Cre01.g033700.t1.2	Cre01.g033700.t1.2		4865520,4866255,4866793,4867236,4867659,4868639,4869033,4869441,4870335,4870871,4871294,4871705	4865925,4866605,4866947,4867306,4867807,4868776,4869104,4869745,4870451,4870960,4871452,4872511	
chr1	4872560	4875421	4872884	4874458	+	Cre01.g033750.t1.1	Cre01.g033750.t1.1		4872560,4874372	4874178,4875421	
chr1	4875470	4876895	4875626	4876515	+	Cre01.g033763.t1.2	Cre01.g033763.t1.2		4875470,4875996,4876263	4875668,4876100,4876895	
chr1	4877030	4883281	4877385	4882724	+	Cre01.g033832.t1.1	Cre01.g033832.t1.1		4877030,4878169,4878661,4879226,4879679,4880167,4880550,4881249,4881822,4882331	4877724,4878264,4878830,4879343,4879807,4880214,4880786,4881441,4881946,4883281	
chr1	4883776	4893679	4886504	4893558	-	Cre01.g033900.t1.1	Cre01.g033900.t1.1		4893402,4892892,4891809,4889684,4889006,4883776	4893679,4892941,4891836,4890148,4889467,4888709	
chr1	4883776	4893679	4886504	4893558	-	Cre01.g033900.t2.1	Cre01.g033900.t2.1		4893402,4892892,4891809,4889684,4889006,4883776	4893679,4892941,4891836,4890148,4889467,4888706	
chr1	4893814	4898579	4894574	4898532	-	EXN2	Cre01.g033950.t1.1		4898082,4897752,4897450,4896735,4896197,4895060,4893814	4898579,4897799,4897611,4896863,4896332,4895981,4894725	ribonuclease H fold
chr1	4898724	4904939	4900062	4904571	-	IPB1	Cre01.g034000.t1.2		4903479,4903191,4902794,4902317,4901927,4901556,4901252,4900892,4900444,4898724	4904939,4903367,4902995,4902507,4902097,4901732,4901401,4901006,4900709,4900212	
chr1	4905289	4910789	4906093	4910577	-	Cre01.g034050.t1.2	Cre01.g034050.t1.2		4910465,4909803,4908753,4908122,4907518,4907127,4906645,4905289	4910789,4909975,4908851,4908304,4907715,4907260,4906758,4906313	
chr1	4911149	4923860	4911308	4923403	+	Cre01.g034100.t1.1	Cre01.g034100.t1.1		4911149,4911816,4912185,4912525,4912958,4913371,4913748,4914631,4915133,4915670,4916381,4917478,4918292,4918692,4919046,4919323,4920648,4921399,4921884,4922303,4922446,4922716,4923040	4911503,4911884,4912263,4912643,4913066,4913443,4914131,4914748,4915240,4915819,4916523,4917961,4918417,4918831,4919112,4919638,4921003,4921560,4921971,4922378,4922516,4922897,4923860	
chr1	4911149	4923860	4911308	4923403	+	Cre01.g034100.t2.1	Cre01.g034100.t2.1		4911149,4911816,4912185,4912525,4912958,4913371,4913748,4914631,4915133,4915670,4916381,4917478,4918292,4918692,4919046,4919323,4920648,4921399,4921884,4922716,4923040	4911503,4911884,4912263,4912643,4913066,4913443,4914131,4914748,4915240,4915819,4916523,4917961,4918417,4918831,4919112,4919638,4921003,4921560,4921971,4922897,4923860	
chr1	4923959	4941916	4924034	4941099	+	Cre01.g034150.t1.1	Cre01.g034150.t1.1		4923959,4924664,4925050,4925551,4925958,4926364,4926803,4927139,4927589,4928043,4928370,4928922,4929286,4929686,4929987,4930429,4930959,4932946,4933465,4934005,4934948,4935409,4935931,4936470,4936816,4937277,4938025,4938455,4938736,4939415,4939981,4940460	4924213,4924804,4925113,4925625,4926141,4926455,4926921,4927235,4927707,4928117,4928556,4929042,4929386,4929766,4930053,4930643,4932576,4933094,4933720,4934685,4935090,4935579,4936110,4936614,4937015,4937426,4938141,4938562,4938894,4939606,4940070,4941916	
chr1	4943699	4957440	4943792	4955640	+	Cre01.g034200.t1.1	Cre01.g034200.t1.1		4943699,4944444,4944830,4945341,4945524,4945872,4946181,4946478,4946671,4947013,4947321,4947639,4947891,4948160,4948563,4949013,4949383,4949615,4949901,4950572,4950870,4951265,4953058,4953466,4953810,4954194	4943938,4944540,4944916,4945370,4945605,4945924,4946249,4946524,4946824,4947072,4947383,4947712,4947936,4948382,4948735,4949089,4949494,4949723,4950115,4950658,4950938,4952778,4953280,4953566,4953918,4957440	
chr1	4957443	4959711	4958330	4959625	-	Cre01.g034250.t1.1	Cre01.g034250.t1.1		4959548,4959428,4959232,4959027,4958574,4957443	4959711,4959473,4959282,4959077,4958666,4958351	
chr1	4959809	4964160	4959937	4963988	+	Cre01.g034300.t1.2	Cre01.g034300.t1.2		4959809,4960152,4960408,4960607,4961128,4961810,4963184	4960012,4960225,4960459,4960867,4961554,4962954,4964160	
chr1	4964201	4967198	4966739	4967064	-	Cre01.g034325.t1.1	Cre01.g034325.t1.1		4964201	4967198	
chr1	4967246	4974558	4967346	4974091	-	Cre01.g034350.t1.1	Cre01.g034350.t1.1		4974033,4973827,4973002,4972699,4972351,4971457,4970367,4969683,4967246	4974558,4973863,4973208,4972750,4972520,4972006,4970788,4970208,4969347	
chr1	4974871	4978718	4975075	4978581	-	Cre01.g034380.t1.2	Cre01.g034380.t1.2		4978252,4977787,4977100,4976826,4976298,4975891,4974871	4978718,4977883,4977509,4976939,4976611,4976129,4975711	
chr1	4979311	4981138	4979930	4981044	-	PGL1	Cre01.g034400.t1.1		4979311	4981138	belongs to pentose phosphate pathway; probably chloroplast-targeted
chr1	4981239	4985958	4981320	4985337	+	Cre01.g034451.t1.1	Cre01.g034451.t1.1		4981239,4981559,4982184,4983248,4983780,4984476,4985229	4981415,4981592,4982330,4983388,4983883,4984740,4985958	
chr1	4985963	5004358	4986213	5004082	-	Cre01.g034500.t1.2	Cre01.g034500.t1.2		5004025,5002610,5002129,5001712,5001496,5001157,5000683,5000442,5000160,4999512,4999048,4998677,4996678,4996385,4993902,4991911,4990581,4988003,4985963	5004358,5003878,5002314,5001921,5001578,5001307,5000925,5000543,5000272,4999872,4999305,4998799,4998459,4996480,4996217,4993707,4991521,4990103,4987788	
chr1	5004617	5006325	5005061	5006158	-	FAP109	Cre01.g034550.t1.2		5006041,5005721,5005452,5004617	5006325,5005843,5005556,5005247	Found in the flagellar proteome
chr1	5006656	5015117	5006948	5014516	+	Cre01.g034600.t1.2	Cre01.g034600.t1.2		5006656,5007148,5007798,5008138,5008539,5009362,5010067,5010459,5010946,5011314,5012150,5012766,5013956	5006993,5007658,5007994,5008374,5009202,5009842,5010263,5010637,5011156,5012025,5012586,5013785,5015117	
chr1	5015206	5022847	5015361	5022663	+	Cre01.g034650.t1.2	Cre01.g034650.t1.2		5015206,5015682,5016076,5016392,5016698,5017122,5017643,5017918,5018837,5019289,5019755,5020191,5021000,5021403,5021863,5022354	5015508,5015792,5016122,5016450,5016969,5017348,5017728,5018006,5019046,5019468,5019994,5020678,5021103,5021761,5022126,5022847	
chr1	5023010	5026545	5023540	5026276	-	Cre01.g034700.t1.1	Cre01.g034700.t1.1		5026130,5025807,5025734,5025330,5023010	5026545,5025923,5025743,5025389,5024905	
chr1	5026606	5029795	5026745	5029669	-	Cre01.g034750.t1.1	Cre01.g034750.t1.1		5029516,5029380,5029134,5028934,5028342,5028024,5027626,5026606	5029795,5029445,5029251,5029024,5028755,5028192,5027871,5027480	
chr1	5029856	5032805	5030458	5032575	-	Cre01.g034800.t1.1	Cre01.g034800.t1.1		5031273,5030970,5029856	5032805,5031074,5030608	
chr1	5033791	5040455	5036650	5040315	-	Cre01.g034850.t1.1	Cre01.g034850.t1.1		5040225,5039955,5039553,5039381,5039146,5036865,5033791	5040455,5040152,5039621,5039438,5039194,5038981,5036697	
chr1	5040586	5043045	5041272	5042721	-	Cre01.g034875.t1.1	Cre01.g034875.t1.1		5042687,5040586	5043045,5041460	
chr1	5044756	5051367	5045498	5050469	+	CDPK5	Cre01.g034900.t1.2		5044756,5045877,5046701,5046958,5047282,5047736,5047950,5048146,5048352,5048755,5049552,5050297	5045584,5045940,5046802,5047107,5047494,5047804,5048001,5048233,5048540,5049337,5050165,5051367	
chr1	5051374	5059585	5052146	5059333	-	Cre01.g034950.t1.2	Cre01.g034950.t1.2		5059249,5058857,5058431,5057985,5057556,5056215,5055801,5055399,5055114,5054762,5053899,5053580,5053279,5052542,5051374	5059585,5058914,5058714,5058110,5057761,5056475,5055951,5055536,5055218,5054925,5053963,5053692,5053435,5052676,5052322	
chr1	5059690	5064055	5060270	5063987	-	Cre01.g035000.t1.2	Cre01.g035000.t1.2		5063150,5062493,5061602,5061172,5060799,5059690	5064055,5062612,5061733,5061322,5060905,5060510	
chr1	5064990	5066785	5065484	5066486	-	Cre01.g035050.t1.2	Cre01.g035050.t1.2		5065775,5065600,5064990	5066785,5065627,5065484	
chr1	5064990	5066785	5065484	5066486	-	Cre01.g035050.t2.1	Cre01.g035050.t2.1		5065775,5065593,5064990	5066785,5065627,5065484	
chr1	5067126	5072016	5067448	5069969	+	Cre01.g035100.t1.2	Cre01.g035100.t1.2		5067126,5067905,5068357,5068599,5068866,5069323,5069696	5067563,5067975,5068467,5068683,5069044,5069463,5072016	
chr1	5072227	5075175	5072516	5075052	-	Cre01.g035150.t1.1	Cre01.g035150.t1.1		5075007,5074605,5074203,5073977,5073517,5073210,5072227	5075175,5074873,5074383,5074086,5073701,5073376,5072756	
chr1	5075276	5077403	5075411	5077268	+	Cre01.g035200.t1.2	Cre01.g035200.t1.2		5075276,5075900,5076749	5075600,5076481,5077403	
chr1	5077410	5081325	5077631	5081260	-	Cre01.g035250.t1.2	Cre01.g035250.t1.2		5081142,5080859,5080592,5080182,5079830,5079370,5078865,5078327,5077977,5077410	5081325,5081013,5080717,5080378,5080017,5079485,5079017,5078557,5078177,5077805	
chr1	5081399	5085275	5081775	5085064	-	CPA2	Cre01.g035300.t1.2		5084935,5084512,5084112,5083704,5083407,5083089,5082775,5082367,5081399	5085275,5084616,5084202,5083821,5083495,5083141,5082858,5082504,5082087	Highly similar to plant N-carbamoylputrescine amidase (amidohydrolase), last step in the agmatinase pathway of polyamine (putrescine) biosynthesis; null-allele mutant was isolated (PMID 29743196)
chr1	5085408	5089573	5085735	5089243	-	Cre01.g035350.t1.2	Cre01.g035350.t1.2		5089102,5088948,5088605,5088175,5087854,5087575,5087226,5086739,5086270,5085408	5089573,5088983,5088688,5088320,5087947,5087633,5087311,5086820,5086383,5085952	
chr1	5090160	5095865	5093020	5095712	-	Cre01.g035400.t1.1	Cre01.g035400.t1.1		5095558,5095210,5094932,5090160	5095865,5095338,5095036,5094690	
chr1	5096409	5100565	5097330	5100430	-	Cre01.g035450.t1.2	Cre01.g035450.t1.2		5100318,5099709,5098949,5098710,5098117,5097719,5096409	5100565,5099835,5099045,5098773,5098220,5097814,5097462	
chr1	5100686	5112417	5100975	5111530	+	VPS34	Cre01.g035500.t1.2		5100686,5102201,5102880,5103543,5103920,5104328,5104942,5105378,5105679,5106697,5107420,5107801,5108187,5108473,5108744,5109784,5110350,5110961,5111398	5101770,5102398,5102996,5103795,5103999,5104441,5105025,5105443,5105848,5106786,5107508,5107901,5108225,5108565,5109382,5110028,5110482,5111098,5112417	Expressed Protein. Similar to VPS34, a phosphatidylinositol-3-kinase, involved in vacuolar transport and lipid metabolism; identical to partial cDNA sequence gi 2109288 gb U97662.1 CRU97662. Missing some exons due to sequence gaps
chr1	5112476	5117116	5112652	5116792	+	Cre01.g035550.t1.1	Cre01.g035550.t1.1		5112476,5112870,5113048,5113341,5113936,5114281,5114571,5114993,5115706,5116049,5116294,5116515	5112785,5112960,5113094,5113481,5114120,5114382,5114815,5115380,5115945,5116136,5116354,5117116	
chr1	5117150	5122825	5117308	5122682	-	MSC2	Cre01.g035600.t1.1		5122658,5122407,5122079,5121700,5121366,5121078,5120800,5120500,5120090,5119859,5119491,5119079,5118756,5118013,5117150	5122825,5122530,5122281,5121930,5121435,5121133,5120840,5120613,5120298,5119923,5119566,5119191,5118857,5118102,5117731	sequence similarity with bacterial (E. coli) mechanosensitive ion channel MscS
chr1	5123126	5128077	5123364	5127281	+	Cre01.g035650.t1.2	Cre01.g035650.t1.2		5123126,5123773,5124026,5124416,5124610,5124930,5125222,5125602,5125955	5123598,5123904,5124208,5124478,5124712,5125003,5125272,5125652,5128077	
chr1	5128080	5132975	5128175	5132915	-	Cre01.g035700.t1.2	Cre01.g035700.t1.2		5132684,5132251,5131191,5130984,5130722,5130382,5130160,5128080	5132975,5132382,5131373,5131046,5130824,5130506,5130210,5129825	
chr1	5133306	5139587	5133743	5138258	+	MSC3	Cre01.g035750.t1.2		5133306,5134201,5134708,5135067,5135296,5135496,5135814,5136175,5136416,5136719,5137187,5137436	5133923,5134470,5134777,5135125,5135336,5135606,5136022,5136239,5136491,5136831,5137288,5139587	sequence similarity with bacterial (E. coli) mechanosensitive ion channel MscS
chr1	5139600	5146305	5140894	5146041	-	IRK2	Cre01.g035800.t1.2		5146018,5144794,5144436,5144056,5143744,5143136,5142714,5142250,5141729,5139600	5146305,5144881,5144486,5144164,5143808,5143327,5142910,5142358,5141878,5141635	putative inward rectifier K+ channel
chr1	5146406	5155857	5146624	5155183	+	SEC24B	Cre01.g035850.t1.2		5146406,5146960,5147284,5148219,5148994,5149531,5150629,5150961,5151425,5152005,5152573,5152968,5153483,5154114,5154591,5154952	5146655,5147183,5148048,5148371,5149174,5149710,5150758,5151081,5151568,5152291,5152684,5153084,5153698,5154337,5154690,5155857	Hypothetical Conserved Protein. Similar to SEC24 component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex.
chr1	5155906	5161387	5155983	5160704	+	Cre01.g035900.t1.1	Cre01.g035900.t1.1		5155906,5156115,5158617	5155986,5158212,5161387	
chr1	5161390	5171795	5161865	5171734	-	Cre01.g035950.t1.1	Cre01.g035950.t1.1		5171401,5170230,5169734,5169243,5169042,5168585,5168154,5167657,5167229,5166820,5166484,5166083,5165826,5165407,5164889,5164042,5163360,5163104,5162740,5162220,5161390	5171795,5171118,5170041,5169356,5169098,5168681,5168272,5167734,5167381,5167027,5166569,5166163,5165908,5165527,5165083,5164514,5163691,5163267,5162924,5162391,5161940	
chr1	5172423	5177015	5172589	5176151	+	Cre01.g036000.t1.1	Cre01.g036000.t1.1		5172423,5172798,5173250,5173662,5173870,5174134,5174630	5172652,5173067,5173499,5173716,5173980,5174455,5177015	
chr1	5177017	5183912	5177206	5183596	-	MLH1	Cre01.g036050.t1.1		5183296,5183042,5182690,5182391,5181867,5181469,5181083,5180354,5179844,5179478,5179162,5178802,5178408,5178064,5177496,5177017	5183912,5183095,5182821,5182492,5182139,5181599,5181182,5180796,5180198,5179693,5179262,5178901,5178513,5178197,5177855,5177323	MutL homolog; involved in DNA mismatch repair, together with MSH proteins
chr1	5184083	5192058	5184284	5191247	+	Cre01.g036100.t1.1	Cre01.g036100.t1.1		5184083,5184417,5184698,5185123,5185594,5185855,5186140	5184336,5184553,5185025,5185467,5185713,5186044,5192058	
chr1	5192126	5197492	5193359	5197066	-	Cre01.g036150.t1.2	Cre01.g036150.t1.2		5196279,5195834,5194471,5193941,5192126	5197492,5195906,5195664,5194111,5193699	
chr1	5197593	5203094	5197697	5202090	+	Cre01.g036200.t1.2	Cre01.g036200.t1.2		5197593,5198703,5199274,5199956,5200452,5201478,5201820	5198152,5198862,5199402,5200102,5200712,5201585,5203094	null-allele mutant was isolated (PMID 29743196)
chr1	5203097	5214712	5204093	5214511	-	Cre01.g036250.t1.2	Cre01.g036250.t1.2		5214413,5214161,5213843,5213403,5213164,5212867,5212500,5212231,5211866,5211600,5211362,5211036,5210655,5210364,5208474,5203097	5214712,5214224,5213944,5213498,5213196,5212932,5212556,5212317,5211970,5211695,5211374,5211162,5210870,5210468,5210027,5208276	
chr1	5214917	5219882	5215477	5219768	-	Cre01.g036300.t1.1	Cre01.g036300.t1.1		5215670,5214917	5219882,5215477	
chr1	5219937	5232302	5220255	5232221	-	PMA1	Cre01.g036350.t1.1		5231777,5231336,5230843,5230245,5229595,5229187,5228972,5228592,5228125,5227524,5227093,5225690,5225372,5224928,5224429,5223967,5223713,5223482,5223082,5222774,5222254,5221808,5221368,5221004,5220819,5219937	5232302,5231443,5230941,5230364,5229764,5229261,5229042,5228713,5228243,5227649,5227164,5226931,5225426,5225134,5224522,5224151,5223794,5223547,5223177,5222826,5222382,5221894,5221493,5221114,5220854,5220603	
chr1	5232473	5235954	5232734	5235473	+	Cre01.g036400.t1.2	Cre01.g036400.t1.2		5232473,5232847,5233527,5233833,5234122,5234649,5235385	5232744,5233061,5233595,5233968,5234226,5234778,5235954	
chr1	5235957	5237792	5235976	5237742	-	Cre01.g036451.t1.1	Cre01.g036451.t1.1		5237575,5237221,5236766,5236491,5235957	5237792,5237396,5236960,5236576,5236336	
chr1	5237847	5240862	5237946	5240757	-	Cre01.g036500.t1.2	Cre01.g036500.t1.2		5240706,5240511,5240278,5239920,5239024,5238694,5238301,5237847	5240862,5240588,5240431,5240080,5239722,5238828,5238403,5238080	
chr1	5237847	5240862	5237946	5240306	-	Cre01.g036500.t2.1	Cre01.g036500.t2.1		5240706,5240511,5240278,5239920,5239024,5238694,5238301,5237847	5240862,5240588,5240431,5240080,5239722,5238828,5238403,5238080	
chr1	5241003	5243605	5241147	5242869	+	ERV14	Cre01.g036550.t1.2		5241003,5241271,5241846,5242484,5242827	5241156,5241345,5242019,5242597,5243605	Expressed Protein. Similar to Erv14p/cornichon, an ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation
chr1	5243607	5248982	5244126	5248884	-	EXN3	Cre01.g036600.t1.2		5248752,5248634,5248314,5247743,5247271,5246801,5246391,5245704,5245254,5243607	5248982,5248669,5248436,5247933,5247452,5247002,5246511,5245904,5245352,5244966	
chr1	5249552	5255384	5249890	5254954	+	Cre01.g036650.t1.1	Cre01.g036650.t1.1		5249552,5250298,5250531,5251073,5251389,5251601,5251913,5252045,5252337,5252651,5252925,5254245,5254815	5249946,5250367,5250632,5251201,5251454,5251768,5251955,5252210,5252525,5252755,5254002,5254621,5255384	
chr1	5255431	5261074	5255684	5260109	+	Cre01.g036700.t1.2	Cre01.g036700.t1.2		5255431,5256031,5256218,5256515,5256780,5256989,5257248,5257382,5257695,5258008,5258326,5258573,5259315,5259973	5255815,5256097,5256319,5256643,5256845,5257156,5257290,5257459,5257782,5258196,5258427,5259179,5259733,5261074	null-allele mutant was isolated (PMID 29743196)
chr1	5261077	5263550	5261727	5263510	-	DMA1	Cre01.g036750.t1.2		5263441,5263233,5262994,5262780,5262357,5262159,5261968,5261077	5263550,5263300,5263147,5262857,5262473,5262225,5262003,5261810	Putative DNA methylase, N-6 adenine-specific
chr1	5263649	5270964	5263734	5270570	+	KIN9-1	Cre01.g036800.t1.1		5263649,5264024,5264564,5265154,5265539,5265880,5266127,5266516,5266731,5267350,5267813,5268193,5268845,5269132,5269471,5269823,5270444	5263947,5264172,5264618,5265246,5265628,5265981,5266267,5266556,5266899,5267502,5268023,5268608,5268925,5269272,5269685,5270234,5270964	kinesin-9 family protein (peptide is shared with several kinesins)
chr1	5271013	5276339	5271231	5275725	+	PDY1	Cre01.g036850.t1.2		5271013,5271531,5272001,5272368,5272725,5273062,5273392,5273736,5274239,5274789,5275046,5275339,5275620	5271378,5271788,5272174,5272490,5272848,5273220,5273492,5273957,5274490,5274841,5275082,5275389,5276339	Contains a proline dehydrogenase domain (IPR2872) and a potential EF-hand. An EF-hand is also present in a Caenorhabditis elegans proline oxidase. In human, a proline oxidase gene is induced by p53 (PIG6) and mediates apoptosis through a calcineurin-dependent pathway [PMID: 15914462]. In Arabidopsis a proline oxidase gene is induced in response to osmotic stress [PMID:8776899].
chr1	5276708	5285842	5279039	5285707	-	Cre01.g036900.t1.1	Cre01.g036900.t1.1		5285395,5285095,5284827,5284260,5283722,5283398,5282299,5281482,5281072,5280751,5280291,5280022,5279695,5276708	5285842,5285172,5284926,5284546,5283799,5283536,5283215,5281717,5281116,5280844,5280452,5280084,5279754,5279312	
chr1	5285897	5290902	5287539	5290767	-	CBA1	Cre01.g036950.t1.2		5290658,5290268,5289954,5289419,5288906,5288258,5285897	5290902,5290435,5290032,5289594,5289185,5288462,5287692	
chr1	5291353	5296224	5291992	5296085	+	SCPL49	Cre01.g037000.t1.1		5291353,5292421,5292762,5292992,5293282,5293594,5293915,5294239,5294665,5295013,5295325,5295935	5292275,5292608,5292837,5293044,5293407,5293644,5294013,5294400,5294743,5295127,5295460,5296224	null-allele passenger mutation was isolated (PMID 29743196)
chr1	5291593	5296224	5292208	5296085	+	SCPL49	Cre01.g037000.t2.1		5291593,5292421,5292762,5292992,5293282,5293594,5293915,5294239,5294665,5295013,5295325,5295935	5292275,5292608,5292837,5293044,5293407,5293644,5294013,5294400,5294743,5295127,5295460,5296224	null-allele passenger mutation was isolated (PMID 29743196)
chr1	5296273	5299124	5296931	5298671	+	Cre01.g037050.t1.2	Cre01.g037050.t1.2		5296273,5296856,5297166,5297529,5297800,5298015,5298329,5298608	5296676,5296986,5297268,5297574,5297862,5298086,5298409,5299124	
chr1	5299201	5306736	5299388	5305869	+	Cre01.g037100.t1.1	Cre01.g037100.t1.1		5299201,5299683,5301144,5301509,5301983,5302252,5302482,5302813,5303125,5303354,5303741,5304138,5304374,5305149,5305575	5299522,5299749,5301245,5301571,5302042,5302323,5302649,5302855,5303202,5303441,5303929,5304245,5304621,5305312,5306736	
chr1	5306738	5314702	5308242	5314176	-	Cre01.g037150.t1.1	Cre01.g037150.t1.1		5314495,5312931,5312061,5311679,5311254,5310752,5310409,5310000,5309289,5308922,5308687,5306738	5314702,5314277,5312242,5311823,5311419,5310948,5310484,5310133,5309699,5309021,5308748,5308398	
chr1	5314813	5316434	5314979	5315678	+	Cre01.g037200.t1.2	Cre01.g037200.t1.2		5314813,5315462	5315096,5316434	
chr1	5317236	5319862	5318589	5319686	-	Cre01.g037250.t1.2	Cre01.g037250.t1.2		5319402,5317236	5319862,5318785	
chr1	5320673	5324204	5321152	5323603	+	Cre01.g037300.t1.2	Cre01.g037300.t1.2		5320673,5321412,5322147,5322562,5323471	5321310,5321890,5322383,5322635,5324204	
chr1	5320673	5324204	5321152	5323471	+	Cre01.g037300.t2.1	Cre01.g037300.t2.1		5320673,5321412,5322147,5322562,5323054,5323471	5321310,5321890,5322383,5322635,5323292,5324204	
chr1	5320673	5324204	5321152	5323108	+	Cre01.g037300.t3.1	Cre01.g037300.t3.1		5320673,5321412,5322147,5322562,5323054	5321310,5321890,5322383,5322635,5324204	
chr1	5324257	5329522	5324839	5329461	-	CGLD2	Cre01.g037350.t1.1		5328918,5328601,5328079,5327602,5327054,5326915,5326563,5325935,5325448,5324257	5329522,5328686,5328256,5327673,5327189,5326961,5326687,5326001,5325564,5325034	Conserved in the Green Lineage and Diatoms
chr1	5329643	5335994	5329831	5335607	+	CYN19-1	Cre01.g037400.t1.1		5329643,5330331,5330898,5331416,5331808,5332559,5333142,5333586,5333986,5334410,5334827,5335607	5330040,5330474,5331060,5331511,5332311,5332683,5333241,5333677,5334069,5334506,5334957,5335994	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type similar to At2g16600 (AtCYP19-1) and other cytosolic cyclophilins; has homology to mRNA splicing factor SYF2
chr1	5336063	5339804	5336274	5339557	+	Cre01.g037450.t1.1	Cre01.g037450.t1.1		5336063	5339804	
chr1	5339819	5341202	5340195	5341061	-	Cre01.g037476.t1.1	Cre01.g037476.t1.1		5340861,5339819	5341202,5340319	
chr1	5341443	5342724	5341477	5342572	+	Cre01.g037500.t1.2	Cre01.g037500.t1.2		5341443,5342012,5342441	5341783,5342120,5342724	
chr1	5342737	5359502	5343433	5358944	-	Cre01.g037550.t1.1	Cre01.g037550.t1.1		5358242,5358020,5357798,5357225,5356381,5355633,5355255,5354769,5354446,5354213,5353978,5353460,5353023,5351834,5351393,5350707,5350372,5349864,5349208,5348678,5348315,5347896,5347439,5347010,5346579,5345951,5345460,5345135,5344772,5344339,5343919,5342737	5359502,5358052,5357887,5357601,5356975,5356154,5355494,5355098,5354606,5354299,5354098,5353798,5353309,5352865,5351662,5351105,5350546,5350039,5349529,5349045,5348471,5348108,5347721,5347249,5346865,5346350,5345662,5345246,5344993,5344596,5344127,5343571	
chr1	5359585	5365332	5360673	5364601	-	Cre01.g037600.t1.1	Cre01.g037600.t1.1		5365032,5364573,5359585	5365332,5364652,5364437	
chr1	5365388	5367552	5365621	5367442	-	Cre01.g037650.t1.2	Cre01.g037650.t1.2		5367417,5367246,5367052,5366852,5366424,5366026,5365388	5367552,5367334,5367108,5366908,5366682,5366174,5365834	
chr1	5368063	5373836	5368943	5373756	-	FAD3	Cre01.g037700.t1.2		5373705,5373264,5372827,5372265,5371504,5371021,5370442,5369920,5369495,5368063	5373836,5373457,5372962,5372371,5371658,5371166,5370603,5370108,5369686,5369162	Linoleate desaturase; enzymes of this family catalyze the insertion of a double bond at the delta position of fatty acids
chr1	5373992	5377207	5374127	5376943	+	Cre01.g037751.t1.1	Cre01.g037751.t1.1		5373992,5374306,5374556	5374160,5374414,5377207	
chr1	5377218	5379815	5377967	5379535	-	TRX21	Cre01.g037800.t1.2		5379232,5379064,5378615,5377218	5379815,5379123,5378728,5378153	Shares some similarities with putative ATP binding protein. Contains a thioredoxin homology domain lacking the thioredoxin active site.
chr1	5379991	5382868	5380711	5382816	-	BCC2	Cre01.g037850.t1.1		5382674,5382538,5382407,5382099,5381540,5381200,5379991	5382868,5382584,5382466,5382278,5381608,5381268,5380840	Biotin-containing subunit of the chloroplastic acetyl-coenzyme A carboxylase
chr1	5383006	5385757	5383236	5385274	+	Cre01.g037900.t1.1	Cre01.g037900.t1.1		5383006,5383607,5383926,5384241,5384502,5384740,5384906,5385154	5383311,5383677,5383995,5384391,5384596,5384808,5384974,5385757	
chr1	5385806	5390197	5385979	5389055	+	Cre01.g037950.t1.1	Cre01.g037950.t1.1		5385806,5386352,5387095,5388122	5386166,5386969,5387948,5390197	
chr1	5390376	5407694	5390648	5407232	+	Cre01.g038000.t1.1	Cre01.g038000.t1.1		5390376,5390580,5390947,5391356,5391790,5393038,5393989,5394360,5394656,5395344,5395601,5395973,5396531,5397704,5398037,5398375,5398610,5399021,5399440,5400098,5400488,5400799,5401229,5401535,5402460,5402896,5403320,5404006,5404780,5405558,5406164,5406644	5390462,5390725,5391079,5391529,5392823,5393720,5394134,5394446,5394844,5395399,5395733,5396317,5397295,5397797,5398076,5398438,5398858,5399102,5399536,5400188,5400614,5400965,5401303,5401676,5402573,5402969,5403703,5404479,5405003,5405828,5406373,5407694	
chr1	5408676	5421947	5408928	5419475	+	COP7	Cre01.g038050.t1.1		5408676,5409122,5409501,5409671,5410089,5410578,5410961,5411334,5411628,5412313,5412756,5413106,5413772,5414474,5415959	5409047,5409200,5409539,5409742,5410264,5410641,5411039,5411403,5411760,5412394,5412908,5413575,5414224,5415757,5421947	Histidine kinase rhodopsin 3; contains bacteriorhodopsin, Histine kinase and response regulator receiver domains
chr1	5422356	5429002	5422816	5427722	+	Cre01.g038100.t1.2	Cre01.g038100.t1.2		5422356,5423225,5423465,5424071,5424540,5424964,5425256,5425612,5425956,5426178,5426986,5427419	5422948,5423266,5423538,5424185,5424631,5425071,5425379,5425758,5425990,5426298,5427135,5429002	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family that includes Low-CO2-inducible membrane protein LCI11
chr1	5429010	5440485	5429051	5440358	-	Cre01.g038151.t1.1	Cre01.g038151.t1.1		5440313,5439999,5439752,5439380,5439042,5438602,5438045,5437519,5437165,5436634,5435909,5435397,5435100,5434553,5434155,5433707,5432706,5432105,5431600,5431271,5430876,5429535,5429010	5440485,5440127,5439796,5439640,5439185,5438925,5438385,5437832,5437244,5436870,5436068,5435521,5435177,5434639,5434259,5433861,5433333,5432422,5431806,5431402,5430977,5430617,5429240	
chr1	5440594	5443937	5440762	5443261	+	Cre01.g038200.t1.2	Cre01.g038200.t1.2		5440594,5440934,5441767,5442193,5442342,5442632,5442847,5443084	5440821,5441028,5441924,5442247,5442479,5442714,5442897,5443937	
chr1	5443986	5446963	5444062	5446358	+	SDC1	Cre01.g038250.t1.2		5443986,5444375,5444563,5444847,5445232,5445555,5445910	5444290,5444451,5444683,5445053,5445384,5445736,5446963	Serine decarboxylase involved in ethanolamine production for PtdEtn biosynthesis
chr1	5446970	5449175	5447497	5449058	-	Cre01.g038300.t1.2	Cre01.g038300.t1.2		5448892,5448480,5447951,5446970	5449175,5448709,5448076,5447602	
chr1	5449806	5454187	5450041	5453381	+	Cre01.g038350.t1.1	Cre01.g038350.t1.1		5449806,5451661,5452035,5452264,5452944	5450216,5451717,5452073,5452761,5454187	
chr1	5454250	5454875	5454515	5454720	-	Cre01.g038376.t1.1	Cre01.g038376.t1.1		5454250	5454875	
chr1	5458365	5461675	5458441	5460984	+	CRT2	Cre01.g038400.t1.2		5458365,5458616,5458891,5459040,5459485,5459803,5460370,5460813	5458523,5458818,5458958,5459244,5459562,5460138,5460489,5461675	Calreticulin 2. Calreticulin (CRT) is a high-capacity calcium-binding protein mainly localized to the endoplasmic reticulum in eukaryotic cells. Higher plants contain two distinct groups of CRTs: a CRT1/CRT2 group and a CRT3 group. Similar to Arabidopsis At1g09210.1
chr1	5461726	5466946	5461847	5466290	+	Cre01.g038450.t1.2	Cre01.g038450.t1.2		5461726,5462242,5462865,5463677,5464137,5464934,5465318,5466148	5462024,5462376,5463176,5463745,5464688,5465149,5465928,5466946	
chr1	5466990	5471505	5467567	5471371	-	CYP746A1	Cre01.g038500.t1.2		5470482,5469924,5469474,5468998,5468457,5468036,5466990	5471505,5470073,5469735,5469322,5468587,5468263,5467838	Cytochrome P450. CYP746B1 is found in moss Physcomitrella patens
chr1	5471606	5479655	5471888	5477873	+	SQD2	Cre01.g038550.t1.1		5471606,5471754,5472247,5472878,5474392,5474778,5475219,5476012,5476510,5476873,5477296,5477671	5471661,5471961,5472533,5473022,5474507,5474956,5475363,5476278,5476596,5476948,5477380,5479655	sulfolipid synthase, adds sulfoquinovose to diacylglycerol to produce the plant sulfolipid, sulfoquinovosyldiacylglycerol
chr1	5479791	5483835	5479816	5482914	+	FAD7	Cre01.g038600.t1.2		5479791,5480282,5480501,5480808,5481016,5481391,5481783,5482186,5482510,5482866	5479966,5480354,5480597,5480879,5481199,5481534,5481980,5482296,5482689,5483835	
chr1	5484266	5486902	5484954	5486768	-	SRS2	Cre01.g038650.t1.2		5486643,5486439,5486159,5485829,5485456,5485113,5484266	5486902,5486516,5486255,5486006,5485588,5485310,5484961	SC35-like protein
chr1	5487046	5495557	5487280	5494480	+	CLV5	Cre01.g038700.t1.2		5487046,5487686,5488372,5488995,5489413,5489637,5490162,5490542,5491008,5491499,5491846,5492191,5492516,5492974,5493611,5493918	5487373,5487959,5488589,5489153,5489471,5489779,5490335,5490828,5491181,5491603,5491929,5492349,5492715,5493118,5493684,5495557	
chr1	5495560	5498615	5496195	5498313	-	MOT7	Cre01.g038750.t1.2		5498223,5498054,5497838,5497608,5497362,5497040,5496751,5496467,5495560	5498615,5498126,5497935,5497685,5497408,5497102,5496823,5496556,5496300	Flagellar Associated Protein; Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr1	5499000	5502175	5500022	5502043	-	MIP3	Cre01.g038800.t1.2		5501923,5501696,5501419,5501135,5500788,5500600,5500435,5499000	5502175,5501792,5501510,5501205,5500900,5500655,5500482,5500310	Related to plant plasma membrane SIP, aquaporin-like
chr1	5502286	5509356	5502399	5507808	+	Cre01.g038850.t1.1	Cre01.g038850.t1.1		5502286,5502547,5502836,5503361,5504448,5504736,5505373,5505676,5506892,5507194,5507505	5502477,5502732,5503156,5504233,5504534,5505161,5505512,5506702,5507050,5507376,5509356	
chr1	5509665	5512678	5509743	5512044	+	Cre01.g038900.t1.1	Cre01.g038900.t1.1		5509665,5510041,5510258,5510596,5510861,5511109,5511624,5511897	5509861,5510064,5510415,5510728,5510914,5511260,5511713,5512678	
chr1	5512906	5514829	5512972	5514513	+	SELF	Cre01.g038950.t1.2		5512906,5513532,5513899,5514309	5513191,5513563,5513962,5514829	Most similar to human SelF; contains Sep15/SelM thioredoxin-like domain; apparently not a Selenoprotein in Chlamydomonas
chr1	5514869	5518295	5515138	5518242	-	Cre01.g039000.t1.1	Cre01.g039000.t1.1		5518049,5515633,5515468,5514869	5518295,5517875,5515521,5515297	
chr1	5518396	5528197	5518454	5527187	+	Cre01.g039050.t1.1	Cre01.g039050.t1.1		5518396,5519246,5526437,5526761,5527048	5518575,5526288,5526631,5526885,5528197	
chr1	5528626	5530637	5528720	5530037	+	CSB7	Cre01.g039101.t1.1		5528626,5529688,5529914	5529569,5529798,5530637	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	5530717	5532247	5531555	5532114	-	TIC21	Cre01.g039150.t1.2		5530717	5532247	
chr1	5532346	5534187	5532409	5533550	+	IFT22	Cre01.g039200.t1.2		5532346,5532654,5532915,5533217,5533454	5532540,5532759,5533083,5533293,5534187	Flagellar Associated Protein, found in the Chlamydomonas flagellar proteome [PMID: 15998802]; belongs to core of IFT-B particle; has orthologs in most flagellated eukaryotes (RABL5 in human), a member of the Ras superfamily of GTPases but the GTP-specificity motif abrogated (ATPase?)
chr1	5534236	5536648	5534263	5536009	+	RPS2	Cre01.g039250.t1.1		5534236,5534382,5534489,5534845,5535146,5535580	5534277,5534399,5534666,5535003,5535208,5536648	Cytosolic 40S small ribosomal subunit protein S2
chr1	5534236	5536887	5534263	5536009	+	RPS2	Cre01.g039250.t2.1		5534236,5534382,5534489,5534845,5535146,5535580	5534277,5534399,5534666,5535003,5535208,5536887	Cytosolic 40S small ribosomal subunit protein S2
chr1	5537325	5542775	5537517	5542132	+	RB47	Cre01.g039300.t1.2		5537325,5537733,5538014,5538896,5539310,5540257,5540566,5540880,5541395	5537652,5537835,5538132,5539129,5539426,5540420,5540701,5541108,5542775	almost identical to T07933, polyadenylate-binding protein RB47 precursor, chloroplast-targeted [PMID: 9482869]; regulates translation of psbA; possibly controlled by RB60, a protein disulfide isomerase whose Volvox homolog is controlled by regA (regulator of somatic development)
chr1	5542788	5546603	5543680	5546535	-	NCR2	Cre01.g039350.t1.2		5546097,5544565,5544147,5542788	5546603,5545720,5544355,5543845	NADPH-cytochrome P450 reductase (NADPH-ferrihemoprotein reductase)
chr1	5546716	5551593	5546963	5550945	+	Cre01.g039400.t1.1	Cre01.g039400.t1.1		5546716,5547177,5547543,5547853,5548137,5548452,5548756,5549092,5549728,5550180,5550730	5547005,5547323,5547736,5548008,5548359,5548641,5548924,5549594,5550037,5550583,5551593	
chr1	5551824	5555405	5551977	5554814	+	Cre01.g039450.t1.1	Cre01.g039450.t1.1		5551824,5552589,5553127,5553516,5553797,5554039,5554373,5554664	5552015,5552778,5553183,5553641,5553871,5554177,5554473,5555405	
chr1	5555423	5565163	5556002	5565111	-	FAP89	Cre01.g039500.t1.2		5564954,5564692,5564369,5564114,5563825,5563366,5563062,5562529,5562208,5561578,5561217,5560834,5560326,5559781,5559491,5559188,5558971,5558688,5558425,5558165,5557722,5557468,5557296,5557100,5556526,5556234,5555423	5565163,5564755,5564540,5564210,5563920,5563511,5563160,5562878,5562349,5562063,5561416,5560972,5560520,5560035,5559616,5559313,5559096,5558828,5558550,5558290,5557889,5557623,5557339,5557190,5556906,5556365,5556107	Conserved uncharacterized Flagellar Associated Protein, similar to Notchless; found in the flagellar proteome [PMID: 15998802]
chr1	5565218	5572573	5565603	5572003	-	PLAP1	Cre01.g039550.t1.1		5572123,5568217,5567361,5566948,5566491,5566244,5565218	5572573,5572017,5568103,5567197,5566655,5566356,5565925	PAP-fibrillin family protein
chr1	5572704	5581795	5573134	5581590	+	Cre01.g039600.t1.1	Cre01.g039600.t1.1		5572704,5573808,5574486,5574874,5577861,5578516,5578862,5579319,5580089,5580377,5580936	5573645,5574254,5574620,5577596,5577962,5578620,5579044,5579855,5580203,5580732,5581795	
chr1	5581874	5584735	5581901	5582382	+	Cre01.g039626.t1.1	Cre01.g039626.t1.1		5581874	5584735	
chr1	5584747	5589023	5585012	5588894	-	PDF1C	Cre01.g039650.t1.2		5588889,5586084,5585767,5584747	5589023,5586276,5585880,5585174	Polypeptide deformylase,removes formyl group from initiator Met; organelle targetted; highly similar to nearby PDF1B but seems to lack N-terminal part and shows very low expression level: could be a pseudogene
chr1	5589397	5597283	5590200	5596605	-	Cre01.g039702.t1.1	Cre01.g039702.t1.1		5596421,5596242,5595696,5594935,5593999,5593748,5593439,5591537,5590558,5589397	5597283,5596283,5595725,5595493,5594055,5593856,5593528,5591845,5591114,5590351	
chr1	5597344	5600993	5598563	5600876	-	PDF1B	Cre01.g039750.t1.2		5600737,5600217,5599640,5599323,5597344	5600993,5600355,5599832,5599436,5598725	Polypeptide deformylase,removes formyl group from initiator Met; organelle targetted; linked to PDF1C
chr1	5601104	5606461	5601206	5605837	+	Cre01.g039800.t1.1	Cre01.g039800.t1.1		5601104,5601335,5601484,5601679,5605176,5605567	5601225,5601387,5601558,5605010,5605353,5606461	
chr1	5606468	5612294	5606958	5612159	-	CGL48	Cre01.g039850.t1.1		5612024,5611535,5611278,5611088,5610680,5610424,5610238,5609791,5609481,5609198,5608918,5608535,5608127,5607857,5607461,5606468	5612294,5611675,5611383,5611149,5610802,5610492,5610282,5610134,5609620,5609250,5609037,5608735,5608293,5607938,5607695,5607287	Conserved in the Green Lineage
chr1	5613074	5620255	5613152	5619885	+	TRZ4	Cre01.g039900.t1.2		5613074,5613359,5613735,5614079,5614660,5614905,5615254,5615582,5616023,5616785,5617269,5617773,5618242,5618795,5619279,5619774	5613296,5613487,5613789,5614150,5614740,5615140,5615388,5615755,5616591,5617042,5617467,5617907,5618580,5618920,5619386,5620255	Weak similarity to RNase Z, may be a beta-lactamase family protein
chr1	5621668	5626883	5622121	5626581	-	MFT32	Cre01.g039950.t1.2		5626521,5626171,5625827,5625521,5623764,5623317,5622781,5622487,5621668	5626883,5626304,5625990,5625597,5625365,5623443,5623034,5622611,5622227	Permease, Nodulin-like
chr1	5627004	5630032	5627142	5629506	+	RPL26	Cre01.g040000.t1.2		5627004,5627135,5627473,5627636,5627790,5628955,5629243,5629467	5627018,5627190,5627553,5627695,5627871,5629010,5629314,5630032	Cytosolic 60S large ribosomal subunit protein L26
chr1	5630078	5634233	5631069	5633764	-	TPK1	Cre01.g040050.t1.1		5633998,5633352,5632726,5632305,5631958,5631623,5630078	5634233,5633864,5633114,5632410,5632102,5631756,5631215	Pyrophosphorylate thiamine to form thiamine pyrophosphate (the active form of the cofactor)
chr1	5634364	5637686	5634483	5637483	+	Cre01.g040100.t1.2	Cre01.g040100.t1.2		5634364,5635264,5635654,5636056,5636568	5634685,5635400,5635731,5636232,5637686	
chr1	5637823	5643803	5638556	5643487	-	Cre01.g040150.t1.2	Cre01.g040150.t1.2		5643427,5642974,5642614,5642420,5641749,5641528,5641201,5639547,5639001,5637823	5643803,5643042,5642721,5642508,5641995,5641577,5641285,5640975,5639270,5638744	
chr1	5644051	5649011	5645148	5648759	-	WNK2	Cre01.g040200.t1.2		5648696,5648495,5648187,5647979,5647591,5647403,5647163,5646100,5644051	5649011,5648552,5648305,5648067,5647837,5647452,5647247,5647036,5645891	WNK (With No Lysine) protein kinase homolog
chr1	5649058	5653153	5649560	5653109	-	DNJ9	Cre01.g040250.t1.2		5652982,5652758,5652396,5651477,5651076,5650696,5650329,5650018,5649058	5653153,5652864,5652512,5652208,5651279,5650870,5650522,5650209,5649818	DnaJ-like protein; might be targeted to chloroplast, as judged from homology to rice Q5QMD6 and to Arabidopsis O8799 predicted (weakly) by TargetP to be chloroplast-targeted; contains O-methyltransferase in N-terminus (pfam1596) (but not the higher plan
chr1	5653208	5656673	5653441	5656213	-	Cre01.g040300.t1.2	Cre01.g040300.t1.2		5656499,5656078,5655837,5655489,5655034,5654698,5654260,5653208	5656673,5656238,5655942,5655595,5655184,5654855,5654410,5653680	
chr1	5657009	5666003	5657205	5665722	-	MSH8	Cre01.g040350.t1.1		5665591,5665207,5664729,5664351,5663961,5663390,5662954,5662536,5662128,5661796,5661363,5660994,5660493,5660012,5659675,5659473,5658602,5657009	5666003,5665355,5664895,5664430,5664118,5663490,5663118,5662728,5662276,5661909,5661524,5661111,5660676,5660164,5659711,5659526,5659204,5658294	a DNA helicase.  Forms a complex with MutL (see MLH genes); null-allele passenger mutation was isolated (PMID 29743196)
chr1	5666208	5672923	5666680	5672883	-	Cre01.g040379.t1.2	Cre01.g040379.t1.2		5672451,5671820,5671445,5671196,5670979,5670317,5669963,5669597,5669044,5668767,5668377,5667993,5667756,5667541,5667124,5666208	5672923,5671989,5671487,5671293,5671033,5670805,5670078,5669789,5669215,5668861,5668517,5668217,5667872,5667639,5667221,5666981	
chr1	5673024	5675438	5673199	5675171	+	Cre01.g040400.t1.2	Cre01.g040400.t1.2		5673024,5673593,5673956,5674363,5674841,5675081	5673268,5673727,5674003,5674512,5674912,5675438	
chr1	5676133	5679183	5677996	5678836	-	HDT1	Cre01.g040450.t1.2		5678455,5676133	5679183,5678071	Histidine-Aspartic Acid Phosphotransferase 1; Intermediate in Histidine phosphorylation cascade; Contains H residue that accepts phosphate group from histidine kinase and transfers to a receiver protein
chr1	5680947	5682083	5681678	5681847	-	Cre01.g040476.t1.1	Cre01.g040476.t1.1		5680947	5682083	
chr1	5682194	5685404	5682284	5684516	+	Cre01.g040500.t1.2	Cre01.g040500.t1.2		5682194,5682415,5682598,5682769	5682332,5682525,5682665,5685404	
chr1	5685448	5688043	5686232	5688013	-	Cre01.g040517.t1.1	Cre01.g040517.t1.1		5686594,5685448	5688043,5686232	
chr1	5690458	5691109	5690687	5690880	+	Cre01.g040533.t1.1	Cre01.g040533.t1.1		5690458	5691109	
chr1	5691112	5693397	5691907	5693292	-	Cre01.g040550.t1.1	Cre01.g040550.t1.1		5693258,5693135,5692850,5692571,5692248,5691112	5693397,5693177,5693002,5692690,5692413,5692138	
chr1	5693498	5704930	5693734	5704169	+	FAP327	Cre01.g040600.t1.1		5693498,5694080,5694657,5695186,5695985,5696270,5696642,5697105,5697427,5697656,5698073,5698564,5699018,5699358,5699732,5700550,5700967,5701213,5701536,5702108,5702507,5702992,5703336	5693813,5694518,5694977,5695836,5696144,5696425,5696809,5697254,5697480,5697850,5698267,5698686,5699086,5699525,5700292,5700728,5701044,5701341,5701704,5702278,5702668,5703166,5704930	
chr1	5704932	5712987	5705545	5712486	-	Cre01.g040650.t1.1	Cre01.g040650.t1.1		5712843,5712447,5712063,5711624,5710158,5709845,5709510,5709148,5708749,5708351,5707982,5707558,5707029,5706587,5704932	5712987,5712653,5712218,5711719,5711468,5709940,5709638,5709213,5709082,5708401,5708182,5707661,5707202,5706721,5706256	
chr1	5704932	5712617	5705545	5712486	-	Cre01.g040650.t2.1	Cre01.g040650.t2.1		5712447,5712063,5711624,5710158,5709845,5709510,5709148,5708749,5707982,5707558,5707029,5706587,5704932	5712617,5712218,5711719,5711468,5709940,5709638,5709213,5709082,5708182,5707661,5707202,5706721,5706256	
chr1	5704932	5712987	5705545	5712486	-	Cre01.g040650.t3.1	Cre01.g040650.t3.1		5712843,5712447,5712063,5711624,5710158,5709845,5709510,5709148,5708749,5707982,5707558,5707029,5706587,5704932	5712987,5712653,5712218,5711719,5711468,5709940,5709638,5709213,5709082,5708182,5707661,5707202,5706721,5706256	
chr1	5713088	5714959	5713503	5713803	+	Cre01.g040701.t1.1	Cre01.g040701.t1.1		5713088,5713361,5713502,5713704	5713294,5713445,5713620,5714959	
chr1	5715008	5718679	5715804	5716615	+	Cre01.g040750.t1.1	Cre01.g040750.t1.1		5715008	5718679	
chr1	5718728	5720949	5719450	5720210	+	Cre01.g040801.t1.1	Cre01.g040801.t1.1		5718728	5720949	
chr1	5720958	5734657	5721675	5734410	-	Cre01.g040850.t1.2	Cre01.g040850.t1.2		5734252,5733698,5733277,5732701,5732254,5731862,5731521,5731122,5730864,5730621,5729894,5729377,5728618,5728170,5727777,5726308,5725994,5725659,5724897,5724491,5724106,5723682,5723153,5722711,5720958	5734657,5733974,5733477,5732841,5732421,5731956,5731631,5731257,5730917,5730680,5730340,5729562,5729022,5728325,5727872,5727624,5726089,5725787,5725362,5724541,5724306,5723785,5723326,5722845,5722380	
chr1	5720958	5734657	5721675	5734410	-	Cre01.g040850.t2.1	Cre01.g040850.t2.1		5734252,5733698,5733277,5732701,5732254,5731862,5731521,5731122,5730864,5730621,5729894,5729377,5728618,5728170,5727777,5726308,5725994,5725659,5724897,5724106,5723682,5723153,5722711,5720958	5734657,5733974,5733477,5732841,5732421,5731956,5731631,5731257,5730917,5730680,5730340,5729562,5729022,5728325,5727872,5727624,5726089,5725787,5725362,5724306,5723785,5723326,5722845,5722380	
chr1	5734758	5736669	5734830	5735973	+	Cre01.g040900.t1.1	Cre01.g040900.t1.1		5734758,5735061,5735379,5735802	5734933,5735158,5735414,5736669	
chr1	5736788	5740459	5736826	5740405	+	Cre01.g040950.t1.2	Cre01.g040950.t1.2		5736788,5737412,5737844,5738360,5738692,5738954,5739317,5739702,5740060,5740372	5737288,5737675,5738197,5738512,5738832,5739118,5739515,5739879,5740306,5740459	
chr1	5740462	5743487	5741953	5743405	-	Cre01.g041000.t1.1	Cre01.g041000.t1.1		5743303,5743123,5742760,5740462	5743487,5743167,5742815,5742125	
chr1	5743588	5750639	5743850	5750183	+	AOC6	Cre01.g041050.t1.1		5743588,5744185,5744752,5745421,5745938,5746399,5746954,5747347,5747820,5748301,5748870,5749364	5743936,5744334,5744895,5745509,5746183,5746564,5747064,5747422,5747937,5748483,5748928,5750639	Related to human SLC7A family of solute carriers, involved in cationic amino acid transport (arginine, lysine, ornithine); this is probably the gene mutated in the L-MSX resistant mutant msr1, mapped to a compatible position on LG I
chr1	5743588	5752303	5743850	5751685	+	AOC6	Cre01.g041050.t2.1		5743588,5744185,5744752,5745421,5745938,5746399,5746954,5747347,5747820,5748301,5748870,5749364,5751196	5743936,5744334,5744895,5745509,5746183,5746564,5747064,5747422,5747937,5748483,5748928,5749522,5752303	Related to human SLC7A family of solute carriers, involved in cationic amino acid transport (arginine, lysine, ornithine); this is probably the gene mutated in the L-MSX resistant mutant msr1, mapped to a compatible position on LG I
chr1	5754448	5759789	5754520	5759299	+	HLM3	Cre01.g041100.t1.1		5754448,5754678,5754967,5755195,5756302,5756650,5757233,5757697,5758313,5758689,5758999	5754592,5754803,5755033,5755442,5756394,5756949,5757501,5757778,5758441,5758766,5759789	Protein contains an interrupted SET domain with similarity to Arabidopsis thaliana ATXR2, SET36, SDG36 (At3g2182).  ChromoDB SDG345
chr1	5759858	5769207	5760370	5767124	+	Cre01.g041150.t1.1	Cre01.g041150.t1.1		5759858,5760706,5760960,5761344,5761745,5762031,5762917,5763851,5765787	5760383,5760798,5761066,5761454,5761824,5762758,5763736,5765538,5769207	
chr1	5770302	5775039	5771051	5773344	+	Cre01.g041200.t1.1	Cre01.g041200.t1.1		5770302,5770874,5771799,5772075	5770493,5771597,5771915,5775039	
chr1	5775678	5783315	5775805	5781859	+	Cre01.g041256.t1.2	Cre01.g041256.t1.2		5775678,5775978,5776161,5777089,5777258,5777590,5778079,5778618,5779126,5779880,5780341,5780832,5781453	5775904,5776068,5776283,5777178,5777314,5777837,5778267,5778819,5779562,5780083,5780568,5781064,5783315	
chr1	5776758	5783315	5776857	5781859	+	Cre01.g041256.t2.1	Cre01.g041256.t2.1		5776758,5777089,5777258,5777590,5778079,5778618,5779126,5779880,5780341,5780832,5781453	5776909,5777178,5777314,5777837,5778267,5778819,5779562,5780083,5780568,5781064,5783315	
chr1	5783834	5787347	5784332	5787230	-	ALG10	Cre01.g041300.t1.2		5787191,5786871,5786237,5785387,5784902,5783834	5787347,5787035,5786584,5786018,5785096,5784504	GT59 family
chr1	5787448	5789492	5787582	5788916	+	Cre01.g041351.t1.1	Cre01.g041351.t1.1		5787448,5788262,5788682	5788009,5788419,5789492	
chr1	5790607	5797737	5791271	5796908	-	Cre01.g041400.t1.1	Cre01.g041400.t1.1		5797437,5797123,5796459,5795074,5794801,5794493,5792571,5791621,5790607	5797737,5797275,5796939,5795130,5794909,5794582,5792879,5792171,5791422	
chr1	5798552	5800097	5798775	5798989	-	Cre01.g041426.t1.1	Cre01.g041426.t1.1		5799691,5799522,5798552	5800097,5799583,5799078	
chr1	5800442	5806247	5802015	5805986	-	Cre01.g041450.t1.1	Cre01.g041450.t1.1		5805965,5805520,5805155,5804851,5804468,5803850,5803392,5802816,5800442	5806247,5805885,5805275,5804948,5804557,5804031,5803588,5802985,5802312	
chr1	5806358	5816599	5806981	5815954	+	Cre01.g041500.t1.1	Cre01.g041500.t1.1		5806358,5806719,5806944,5807447,5808698,5809045,5809409,5809845,5810326,5810899,5811418,5811808,5812248,5812739,5813590,5813935,5814413,5815465	5806603,5806830,5807120,5808339,5808856,5809152,5809519,5809931,5810556,5810988,5811537,5812020,5812382,5813386,5813832,5814027,5815183,5816599	
chr1	5816648	5823420	5817105	5821112	+	Cre01.g041550.t1.1	Cre01.g041550.t1.1		5816648,5817209,5817709,5819727,5820144,5820626	5817117,5817496,5819418,5819895,5820334,5823420	
chr1	5823928	5828899	5824072	5827569	+	Cre01.g041583.t1.1	Cre01.g041583.t1.1		5823928,5824514,5825267,5825696,5826058,5826812	5824405,5824639,5825404,5825817,5826180,5828899	null-allele mutant was isolated (PMID 29743196)
chr1	5826798	5828899	5826839	5827569	+	Cre01.g041583.t2.1	Cre01.g041583.t2.1		5826798	5828899	null-allele mutant was isolated (PMID 29743196)
chr1	5833263	5834627	5833695	5834574	-	Cre01.g041650.t1.1	Cre01.g041650.t1.1		5834418,5834166,5833263	5834627,5834324,5834001	
chr1	5833263	5834627	5834008	5834574	-	Cre01.g041650.t2.1	Cre01.g041650.t2.1		5834418,5834166,5833263	5834627,5834324,5834074	
chr1	5835478	5839549	5835578	5839431	+	Cre01.g041667.t1.1	Cre01.g041667.t1.1		5835478,5835853,5836713,5837457,5838436,5839162	5835588,5836009,5836773,5837561,5838652,5839549	
chr1	5838038	5839549	5838082	5839431	+	Cre01.g041667.t2.1	Cre01.g041667.t2.1		5838038,5838483,5839162	5838147,5838652,5839549	
chr1	5839842	5840707	5840239	5840477	-	Cre01.g041700.t1.2	Cre01.g041700.t1.2		5839842	5840707	
chr1	5843748	5848379	5844133	5846330	+	Cre01.g041752.t1.1	Cre01.g041752.t1.1		5843748,5844551,5844979,5845589	5844430,5844763,5845350,5848379	
chr1	5849598	5853409	5849795	5852559	+	Cre01.g041800.t2.1	Cre01.g041800.t2.1		5849598,5850191,5850615,5850792,5850938,5851087,5851270,5851509,5851747,5852050,5852262	5849976,5850517,5850715,5850855,5851014,5851155,5851421,5851583,5851947,5852074,5853409	
chr1	5848838	5853409	5849795	5852559	+	Cre01.g041800.t1.2	Cre01.g041800.t1.2		5848838,5849616,5849783,5850191,5850615,5850792,5850938,5851087,5851270,5851509,5851747,5852050,5852262	5849151,5849623,5849976,5850517,5850715,5850855,5851014,5851155,5851421,5851583,5851947,5852074,5853409	
chr1	5853628	5858039	5853693	5857641	+	Cre01.g041850.t1.1	Cre01.g041850.t1.1		5853628,5854030,5854754,5855258,5855746,5856316,5856709,5857311	5853890,5854272,5854966,5855379,5855917,5856376,5856939,5858039	
chr1	5858088	5861019	5858246	5860954	+	Cre01.g041855.t1.2	Cre01.g041855.t1.2		5858088,5858793,5859723,5860115,5860891	5858426,5859290,5859842,5860183,5861019	
chr1	5874975	5882780	5875993	5882751	-	Cre01.g041900.t1.1	Cre01.g041900.t1.1		5882548,5882286,5881865,5881621,5881235,5880907,5880234,5879985,5879833,5878476,5878027,5877707,5877161,5876846,5874975	5882780,5882431,5882143,5881667,5881458,5881069,5880512,5880073,5879895,5878564,5878135,5877784,5877328,5876924,5876635	
chr1	5883256	5889947	5883502	5888752	+	Cre01.g041950.t1.2	Cre01.g041950.t1.2		5883256,5883615,5884197,5884683,5885014,5885313,5885620,5886653,5887114,5887534,5887842,5888276	5883543,5883708,5884284,5884762,5885118,5885384,5886337,5886753,5887302,5887596,5887986,5889947	
chr1	5890245	5903530	5890848	5903448	-	Cre01.g042000.t1.2	Cre01.g042000.t1.2		5903364,5903020,5902499,5901160,5900612,5899432,5898813,5898548,5897630,5897245,5896528,5896243,5895951,5895537,5894651,5894128,5893497,5892991,5892057,5891449,5890245	5903530,5903147,5902694,5902199,5900852,5900406,5899181,5898599,5898323,5897414,5896688,5896369,5896142,5895637,5895308,5894272,5893878,5893221,5892827,5891896,5891279	
chr1	5903661	5907132	5903908	5906742	+	Cre01.g042050.t1.2	Cre01.g042050.t1.2		5903661,5903894,5904365,5905199,5905574,5906069,5906640	5903787,5903994,5904506,5905290,5905672,5906168,5907132	
chr1	5908144	5918940	5909706	5918548	-	Cre01.g042100.t1.2	Cre01.g042100.t1.2		5918506,5918045,5917722,5915148,5914783,5908144	5918940,5918362,5917798,5917529,5914942,5914617	
chr1	5919015	5922390	5920365	5922228	-	Cre01.g042150.t1.1	Cre01.g042150.t1.1		5922030,5921272,5920811,5919015	5922390,5921799,5920930,5920632	
chr1	5922722	5923990	5923106	5923746	-	Cre01.g042200.t1.1	Cre01.g042200.t1.1		5923594,5923407,5922722	5923990,5923462,5923198	
chr1	5924551	5932232	5924835	5932015	+	Cre01.g042250.t1.1	Cre01.g042250.t1.1		5924551,5925146,5927221,5927434,5927781,5928179,5928528,5928806,5929173,5929527,5930402,5931082,5931484	5924973,5926780,5927302,5927539,5927883,5928288,5928612,5928991,5929343,5930242,5930921,5931237,5932232	
chr1	5932743	5941730	5933754	5941498	-	SRR6	Cre01.g042300.t1.1		5941269,5940620,5938200,5936710,5936467,5935975,5935494,5934470,5932743	5941730,5941055,5940373,5938077,5936555,5936278,5935714,5934839,5934278	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr1	5943530	5963670	5944188	5962951	-	Cre01.g042352.t1.1	Cre01.g042352.t1.1		5962749,5962597,5962316,5961531,5961127,5960791,5960381,5960166,5959907,5959578,5959291,5958955,5958700,5958417,5957968,5957705,5957178,5956522,5956333,5955799,5955206,5954566,5953530,5947857,5944323,5943530	5963670,5962658,5962494,5962095,5961330,5960946,5960633,5960255,5960052,5959755,5959387,5959119,5958833,5958573,5958194,5957841,5957559,5957054,5956386,5956201,5955648,5955049,5954127,5953454,5947742,5944188	
chr1	5964795	5966690	5965845	5966510	-	Cre01.g042402.t1.1	Cre01.g042402.t1.1		5966476,5966059,5964795	5966690,5966267,5965911	
chr1	5967911	5982416	5968491	5981159	+	Cre01.g042450.t1.1	Cre01.g042450.t1.1		5967911,5968577,5969021,5969366,5969646,5970098,5970603,5971075,5971246,5971588,5971812,5972026,5972251,5972585,5972817,5973123,5973366,5973677,5974251,5974559,5975508,5976018,5976451,5976721,5976993,5978460,5978791,5979168,5979561,5979828,5980080,5980364,5980613	5968518,5968931,5969262,5969480,5969914,5970308,5970763,5971150,5971425,5971717,5971892,5972156,5972392,5972712,5973019,5973238,5973586,5974101,5974427,5975368,5975894,5976245,5976617,5976835,5978311,5978670,5979023,5979261,5979709,5979924,5980258,5980457,5982416	
chr1	5983951	6004186	5984721	6002760	+	Cre01.g042502.t1.1	Cre01.g042502.t1.1		5983951,5984672,5985230,5986000,5986407,5986696,5987077,5987280,5987557,5987928,5988200,5988486,5988755,5989134,5989487,5989769,5990274,5990942,5991487,5992039,5992638,5993560,5998847,6000573	5984581,5985017,5985806,5986203,5986538,5986948,5987166,5987425,5987734,5988024,5988364,5988619,5988911,5989360,5989623,5990150,5990806,5990995,5991889,5992481,5993121,5996179,6000500,6004186	
chr1	6004862	6010226	6005223	6010136	-	Cre01.g042550.t1.1	Cre01.g042550.t1.1		6009674,6009237,6008977,6008600,6008310,6007918,6007602,6006916,6006528,6006095,6005771,6004862	6010226,6009346,6009143,6008860,6008475,6008094,6007756,6007475,6006772,6006329,6005866,6005508	
chr1	6010670	6012595	6012165	6012562	-	Cre01.g042600.t1.2	Cre01.g042600.t1.2		6010670	6012595	
chr1	6012650	6015205	6012795	6014081	-	Cre01.g042650.t1.2	Cre01.g042650.t1.2		6014446,6014252,6013972,6013601,6013063,6012650	6015205,6014364,6014091,6013651,6013442,6012951	
chr1	6021460	6024465	6022018	6023840	-	Cre01.g042700.t1.2	Cre01.g042700.t1.2		6024222,6023731,6023499,6022949,6022582,6021460	6024465,6023843,6023549,6023328,6022804,6022440	
chr1	6031056	6036984	6031484	6036262	+	ACH1	Cre01.g042750.t1.2		6031056,6031443,6031786,6031930,6032095,6032253,6032478,6032794,6033297,6033759,6034190,6034681,6035005,6035286,6035668	6031290,6031601,6031848,6032001,6032139,6032328,6032616,6032929,6033521,6033976,6034440,6034882,6035135,6035503,6036984	Aconitate hydratase (EC 4.2.1.3), mitochondrial; citrate hydro-lyase; aconitase
chr1	6036989	6041433	6037825	6041399	-	DVR1	Cre01.g042800.t1.2		6041258,6040795,6040442,6039717,6039261,6038805,6038360,6036989	6041433,6041049,6040556,6039883,6039461,6038966,6038499,6037892	3,8-divinyl protochlorophyllide a 8-vinyl reductase, chloroplast precursor [PMID: 1584938]; predicted chloroplast transit peptide 1-58; [PMID: 15695432; PMID: 1584938].  This is an NAD-dependent epimerase/dehydratase (see SNE family)
chr1	6041480	6043815	6042015	6043760	-	Cre01.g042850.t1.2	Cre01.g042850.t1.2		6043528,6043253,6042895,6042425,6041480	6043815,6043323,6042993,6042560,6042194	
chr1	6043936	6048637	6044141	6047982	+	Cre01.g042900.t1.2	Cre01.g042900.t1.2		6043936,6044345,6044811,6045302,6045781,6046655,6047037,6047248,6047874	6044253,6044535,6044864,6045397,6045930,6046799,6047098,6047487,6048637	
chr1	6048643	6051724	6049638	6051613	-	Cre01.g042950.t1.2	Cre01.g042950.t1.2		6051563,6050937,6050504,6050209,6049959,6048643	6051724,6051054,6050607,6050291,6050002,6049734	
chr1	6051852	6056608	6051993	6056278	+	Cre01.g043000.t1.1	Cre01.g043000.t1.1		6051852,6053536,6054078,6054490,6054968,6055299,6055715,6056068	6053323,6053669,6054263,6054622,6055081,6055458,6055829,6056608	
chr1	6057593	6061035	6058743	6060982	-	SNR2	Cre01.g043050.t1.2		6060607,6060037,6059626,6059280,6057593	6061035,6060154,6059801,6059486,6058983	
chr1	6061090	6063405	6061509	6063375	-	Cre01.g043100.t1.2	Cre01.g043100.t1.2		6063112,6062809,6062490,6062185,6061817,6061090	6063405,6062927,6062557,6062265,6061911,6061600	
chr1	6063506	6065172	6063709	6064217	+	Cre01.g043150.t1.2	Cre01.g043150.t1.2		6063506	6065172	Putative basic-leucine zipper (bZIP) transcription factor
chr1	6065187	6067405	6065462	6067311	-	CGLD6	Cre01.g043200.t1.2		6067259,6066864,6066279,6066050,6065730,6065187	6067405,6067017,6066349,6066085,6065795,6065536	
chr1	6068116	6075799	6068605	6074759	+	Cre01.g043250.t1.1	Cre01.g043250.t1.1		6068116,6068549,6068826,6069344,6069589,6069867,6070151,6070606,6071056,6071313,6071651,6071998,6072282,6072485,6072695,6072876,6073178,6073430,6073798,6074052,6074504	6068429,6068701,6068960,6069387,6069733,6069923,6070481,6070876,6071132,6071371,6071836,6072120,6072371,6072596,6072730,6073075,6073308,6073571,6073894,6074311,6075799	
chr1	6075938	6078825	6076364	6078750	-	Cre01.g043300.t1.2	Cre01.g043300.t1.2		6078650,6078451,6078321,6077945,6077596,6077359,6076903,6076626,6075938	6078825,6078553,6078341,6078112,6077635,6077402,6077193,6076720,6076471	null-allele mutant was isolated (PMID 29743196)
chr1	6081229	6085440	6082518	6085241	-	CAO1	Cre01.g043350.t1.2		6084806,6084424,6083879,6083185,6081229	6085440,6084594,6084208,6083682,6083022	Chlorophyll a oxygenase; chlorophyll b synthase [GI:61742125; PMID: 1584938]; Predicted chloroplast transit peptide 1-29.  Previously annotated as CAO
chr1	6087120	6090415	6087952	6090142	-	Cre01.g043400.t1.2	Cre01.g043400.t1.2		6088879,6088518,6087120	6090415,6088685,6088306	null-allele mutant was isolated (PMID 29743196)
chr1	6090470	6093235	6090648	6093153	-	Cre01.g043450.t1.2	Cre01.g043450.t1.2		6093088,6092944,6092817,6092393,6092061,6091507,6090977,6090470	6093235,6092980,6092869,6092518,6092160,6091569,6091116,6090679	
chr1	6093290	6097337	6093445	6096875	-	Cre01.g043500.t1.1	Cre01.g043500.t1.1		6097004,6096836,6096653,6096279,6095698,6095277,6094724,6094254,6093290	6097337,6096898,6096719,6096358,6096138,6095429,6094816,6094424,6093958	
chr1	6100360	6109775	6102238	6107955	-	Cre01.g043550.t1.1	Cre01.g043550.t1.1		6109150,6107886,6106979,6105272,6100360	6109775,6107975,6107058,6105956,6104878	
chr1	6109840	6113643	6110408	6113460	-	Cre01.g043600.t1.1	Cre01.g043600.t1.1		6113442,6113267,6112887,6112255,6111846,6111332,6111021,6109840	6113643,6113373,6112942,6112671,6111932,6111555,6111087,6110719	
chr1	6114041	6118005	6114726	6117493	-	DLU2	Cre01.g043650.t1.1		6117825,6114041	6118005,6117573	outer dynein arm leucine-rich repeat protein
chr1	6118173	6122475	6118339	6122366	-	Cre01.g043700.t1.2	Cre01.g043700.t1.2		6122291,6122066,6121863,6121551,6121253,6120915,6120461,6119938,6119200,6118173	6122475,6122161,6121920,6121730,6121410,6121107,6120656,6120134,6119637,6118941	
chr1	6122589	6130017	6122803	6129511	+	BBS7	Cre01.g043750.t1.1		6122589,6122940,6123266,6123877,6124251,6124601,6125159,6125535,6125880,6126903,6127293,6127540,6127919,6128249,6128711,6128968,6129406	6122869,6123074,6123334,6124062,6124452,6124697,6125269,6125628,6126158,6127004,6127378,6127739,6128054,6128468,6128803,6129039,6130017	Flagellar protein, core component of the core BBSome complex that targets membrane proteins to cilia
chr1	6130044	6135545	6130568	6135401	-	Cre01.g043800.t1.1	Cre01.g043800.t1.1		6135398,6135193,6134872,6134669,6134440,6134197,6133776,6133484,6132911,6132393,6132135,6131731,6131544,6131191,6130928,6130044	6135545,6135303,6134932,6134736,6134475,6134272,6133944,6133622,6133206,6132699,6132265,6131944,6131597,6131250,6131017,6130766	
chr1	6135640	6136995	6135783	6136259	-	Cre01.g043817.t1.1	Cre01.g043817.t1.1		6136861,6136220,6135640	6136995,6136328,6136143	
chr1	6135640	6136995	6135783	6136259	-	Cre01.g043817.t2.1	Cre01.g043817.t2.1		6136861,6136220,6135640	6136995,6136321,6136143	
chr1	6137620	6148955	6139201	6148491	-	Cre01.g043850.t1.1	Cre01.g043850.t1.1		6148406,6147789,6147553,6147250,6146660,6141827,6141390,6141077,6140814,6140504,6140230,6140023,6139737,6137620	6148955,6148156,6147627,6147373,6147079,6146328,6141497,6141172,6140888,6140527,6140351,6140079,6139880,6139463	
chr1	6149656	6150127	6149818	6150104	+	Cre01.g043901.t1.1	Cre01.g043901.t1.1		6149656,6150104	6150023,6150127	
chr1	6150300	6155645	6151481	6155180	-	Cre01.g043950.t1.1	Cre01.g043950.t1.1		6155363,6154464,6154302,6152661,6150300	6155645,6155201,6154348,6154182,6152529	
chr1	6150300	6155645	6151481	6155180	-	Cre01.g043950.t2.1	Cre01.g043950.t2.1		6155363,6154464,6154302,6152661,6150300	6155645,6155193,6154348,6154182,6152529	
chr1	6156124	6158377	6156396	6158343	+	Cre01.g044000.t1.1	Cre01.g044000.t1.1		6156124,6156491,6157248,6157610,6158082,6158233,6158329	6156412,6156570,6157359,6157719,6158194,6158240,6158377	
chr1	6158380	6159585	6158626	6159343	-	Cre01.g044050.t1.2	Cre01.g044050.t1.2		6159251,6158904,6158380	6159585,6158951,6158687	
chr1	6163594	6169953	6164484	6169539	-	AMB3	Cre01.g044100.t1.2		6169239,6169008,6168823,6168668,6168348,6167906,6165515,6165206,6163594	6169953,6169112,6168915,6168745,6168527,6168186,6167759,6165361,6165060	Belongs to glycoside hydrolase family 14; alpha 1,4-glucan maltohydrolase (EC 3.2.1.2), hydrolyzes the alpha 1,4-glucosidic linkages of starch from the nonreducing ends.
chr1	6170468	6176593	6170848	6176390	-	Cre01.g044150.t1.1	Cre01.g044150.t1.1		6176354,6176012,6175017,6174607,6174112,6173820,6173330,6173088,6172874,6172670,6172442,6172138,6171599,6171324,6171162,6170468	6176593,6176176,6175641,6174810,6174269,6173873,6173608,6173174,6172907,6172763,6172478,6172200,6171874,6171440,6171233,6170995	
chr1	6176934	6179095	6177034	6178469	+	Cre01.g044200.t1.2	Cre01.g044200.t1.2		6176934,6177211,6177405,6177775,6178223	6177118,6177271,6177517,6178053,6179095	
chr1	6179404	6188537	6179539	6187521	+	CAM4	Cre01.g044250.t1.1		6179404,6180190,6180551,6180949,6181431,6181826,6182150,6182484,6185001,6187356	6179785,6180296,6180626,6181044,6181568,6181954,6182266,6184889,6187130,6188537	
chr1	6188658	6191793	6188874	6191544	-	Cre01.g044276.t1.1	Cre01.g044276.t1.1		6191269,6190631,6188658	6191793,6191064,6190349	
chr1	6192644	6200195	6193424	6199066	+	Cre01.g044300.t1.2	Cre01.g044300.t1.2		6192644,6193710,6193983,6194179,6194460,6194806,6195289,6195672,6195929,6196126,6196448,6196698,6196894,6197100,6197273,6197571,6197825,6198150,6198367,6198835	6193556,6193844,6194026,6194323,6194516,6195136,6195541,6195748,6195987,6196311,6196570,6196787,6197005,6197135,6197472,6197701,6197966,6198246,6198638,6200195	
chr1	6200724	6212845	6201060	6212022	+	Cre01.g044350.t1.1	Cre01.g044350.t1.1		6200724,6201245,6201562,6201797,6202229,6202752,6203034,6203537,6203771,6204008,6204431,6204774,6204963,6205528,6206029,6206432,6206707,6207201,6207584,6207927,6208233,6208506,6208862,6209188,6209585,6209865,6210026,6210332,6210591,6210777	6201174,6201302,6201615,6202042,6202273,6202828,6203263,6203626,6203841,6204224,6204645,6204823,6205067,6205763,6206152,6206497,6206892,6207300,6207756,6207973,6208385,6208644,6208954,6209375,6209696,6209913,6210081,6210424,6210635,6212845	
chr1	6212848	6214863	6213449	6214673	-	Cre01.g044400.t1.2	Cre01.g044400.t1.2		6214360,6213890,6212848	6214863,6214065,6213608	
chr1	6214994	6217955	6215379	6217737	+	Cre01.g044450.t1.1	Cre01.g044450.t1.1		6214994,6216481,6216705,6217006,6217514	6216372,6216561,6216852,6217147,6217955	
chr1	6226814	6228587	6226979	6228146	+	Cre01.g044550.t1.2	Cre01.g044550.t1.2		6226814,6227304,6227910,6228101	6227056,6227441,6227976,6228587	
chr1	6229754	6238692	6230523	6238113	+	Cre01.g044600.t1.2	Cre01.g044600.t1.2		6229754,6232813,6233197,6233431,6233710,6233960,6234269,6234724,6235087,6235483,6235899,6236171,6236481,6237184,6237577,6237885	6232575,6232902,6233262,6233551,6233815,6234048,6234447,6234879,6235191,6235713,6235985,6236323,6236801,6237364,6237737,6238692	
chr1	6239644	6246968	6239856	6246431	+	Cre01.g044650.t1.2	Cre01.g044650.t1.2		6239644,6240990,6241415,6241653,6241981,6242267,6242583,6243002,6243495,6243981,6244621,6244961,6245325,6245646,6246012,6246377	6240756,6241079,6241480,6241773,6242083,6242358,6242761,6243160,6243737,6244295,6244761,6245140,6245473,6245723,6246102,6246968	
chr1	6247588	6252753	6248138	6252599	-	Cre01.g044700.t1.2	Cre01.g044700.t1.2		6252542,6252335,6252011,6251776,6251411,6251084,6250758,6250286,6249942,6249596,6249132,6248598,6247588	6252753,6252417,6252059,6251861,6251525,6251204,6250857,6250346,6250078,6249680,6249305,6248801,6248309	
chr1	6252854	6257275	6252974	6255680	+	Cre01.g044750.t1.1	Cre01.g044750.t1.1		6252854,6253292,6253683,6254075,6254583,6254963,6255248,6255625	6253145,6253378,6253841,6254232,6254753,6255077,6255366,6257275	
chr1	6257324	6267945	6257462	6267171	+	PFL1	Cre01.g044800.t1.2		6257324,6257681,6257857,6258212,6264179,6264761,6265301,6265642,6266224,6266660	6257563,6257743,6258019,6258313,6264528,6265150,6265438,6266032,6266507,6267945	Pyruvate-formate lyase; may contain organelle targeting peptide; corresponds to GI:585666 (a C-terminal fragment), induced under phosphate deprivation; also known as formate acetyltransferase. Genbank AJ620191, GI:92084841; PMID: 16452484
chr1	6267888	6301273	6268210	6301073	-	Cre01.g044850.t1.2	Cre01.g044850.t1.2		6300953,6300524,6299873,6299430,6299033,6298663,6297968,6297507,6297034,6296620,6296209,6294395,6293932,6292892,6292468,6291996,6291392,6290961,6290607,6290078,6289745,6289365,6289003,6288641,6288251,6287772,6286971,6286530,6286228,6285424,6284913,6284327,6284013,6283190,6282898,6282641,6281767,6280681,6280213,6279799,6279371,6279017,6277962,6275989,6275328,6274456,6273887,6273387,6273065,6272698,6272323,6271955,6271245,6270844,6270386,6269105,6268629,6267888	6301273,6300587,6300023,6299548,6299229,6298758,6298551,6297701,6297268,6296890,6296466,6295973,6294082,6293452,6292751,6292264,6291579,6291086,6290786,6290450,6289866,6289439,6289140,6288764,6288359,6288059,6287549,6286673,6286353,6286039,6285146,6284740,6284132,6283792,6283034,6282713,6282445,6281524,6280437,6279982,6279554,6279180,6278804,6277785,6275771,6275061,6274314,6273655,6273264,6272904,6272452,6272183,6271725,6271085,6270602,6270192,6268959,6268420	
chr1	6301489	6309304	6301592	6308089	+	Cre01.g044900.t2.1	Cre01.g044900.t2.1		6301489,6301978,6302776,6303072,6303426,6303636,6303850,6304768,6304957,6305214,6305652,6305987,6306197,6306364,6306681,6307013,6307288,6307754,6308032	6301612,6302430,6302830,6303227,6303459,6303670,6303990,6304834,6305050,6305334,6305789,6306058,6306233,6306431,6306851,6307111,6307364,6307832,6309304	
chr1	6301384	6309304	6301592	6308089	+	Cre01.g044900.t1.2	Cre01.g044900.t1.2		6301384,6301978,6302776,6303072,6303426,6303636,6303850,6304768,6304957,6305214,6305652,6305987,6306197,6306364,6306681,6307013,6307288,6307754,6308032	6301612,6302430,6302830,6303227,6303459,6303670,6303990,6304834,6305050,6305334,6305789,6306058,6306233,6306431,6306851,6307111,6307364,6307832,6309304	
chr1	6309308	6315143	6309880	6314380	-	Cre01.g044950.t1.2	Cre01.g044950.t1.2		6314194,6313453,6313052,6312816,6312300,6311969,6311607,6311094,6310743,6309308	6315143,6313911,6313261,6312912,6312444,6312166,6311771,6311412,6310832,6310498	
chr1	6316086	6319103	6316759	6318952	-	PRL9	Cre01.g045000.t1.2		6318739,6318147,6317856,6317528,6317073,6316086	6319103,6318555,6317990,6317571,6317232,6316803	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr1	6319334	6321720	6319565	6320622	+	Cre01.g045050.t1.2	Cre01.g045050.t1.2		6319334	6321720	
chr1	6322006	6325299	6322702	6325202	-	Cre01.g045100.t1.2	Cre01.g045100.t1.2		6325132,6325000,6324318,6323776,6323396,6322006	6325299,6325016,6324506,6323857,6323526,6322783	null-allele mutant was isolated (PMID 29743196)
chr1	6325388	6333973	6326830	6333752	-	FAP304	Cre01.g045150.t1.2		6333729,6332976,6332208,6331874,6331389,6331146,6330910,6330423,6329985,6329625,6329159,6328841,6328436,6328105,6327475,6325388	6333973,6333354,6332357,6331943,6331495,6331184,6330976,6330516,6330153,6329711,6329251,6328924,6328609,6328197,6327563,6327017	
chr1	6335453	6338184	6335727	6337862	+	Cre01.g045200.t1.1	Cre01.g045200.t1.1		6335453,6336012,6336288,6336550,6336806,6337073,6337466,6337832	6335904,6336086,6336344,6336563,6336872,6337141,6337504,6338184	
chr1	6359148	6363883	6359261	6363263	+	DRC5	Cre01.g045350.t1.2		6359148,6359504,6359826,6360159,6361033,6361523,6361974,6362493,6363152	6359423,6359563,6359893,6360293,6361204,6361650,6362103,6362699,6363883	(PubMed ID:23427265 Bower et al. Porter 2013) and (PubMed ID:21700706 Lin et al. Nicastro 2011); gene deleted in pf4; conserved
chr1	6363937	6367852	6364246	6367729	-	CSB8	Cre01.g045400.t1.1		6367637,6367105,6366934,6366579,6366280,6365358,6364705,6364485,6363937	6367852,6367217,6366990,6366749,6366444,6366184,6365151,6364595,6364369	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	6363937	6366262	6364246	6366231	-	CSB8	Cre01.g045400.t2.1		6365146,6364705,6364485,6363937	6366262,6365071,6364595,6364369	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	6366327	6367852	6366420	6367729	-	CSB8	Cre01.g045400.t3.1		6367637,6367105,6366934,6366327	6367852,6367217,6366990,6366749	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	6368023	6368694	6368173	6368478	+	Cre01.g045426.t1.1	Cre01.g045426.t1.1		6368023,6368337	6368245,6368694	
chr1	6368717	6372162	6369608	6372059	-	Cre01.g045450.t1.2	Cre01.g045450.t1.2		6371915,6371433,6370939,6370428,6369969,6368717	6372162,6371534,6371118,6370634,6370031,6369692	
chr1	6372313	6385086	6372521	6384066	+	Cre01.g045500.t1.2	Cre01.g045500.t1.2		6372313,6372924,6373371,6373595,6374132,6374333,6374836,6377482,6378025,6378542,6379007,6379596,6380169,6380701,6381301,6382010,6382430,6383123,6383527,6383970	6372671,6373096,6373472,6373786,6374190,6374562,6377196,6377663,6378211,6378702,6379127,6379907,6380271,6380900,6381723,6382108,6382780,6383296,6383679,6385086	null-allele mutant was isolated (PMID 29743196)
chr1	6385833	6390918	6386093	6389834	+	APE2	Cre01.g045550.t1.2		6385833,6386289,6386580,6387574,6387966,6388619,6389177,6389585	6386201,6386404,6386648,6387727,6388178,6388728,6389378,6390918	Putative triose-phosphate transporter.  Located in zones of contact between the inner and outer membrane of the chloroplast (By similarity). Belongs to the TPT transporter family. TPT (TC2.A.7.9.1) subfamily transporter; null-allele mutant was isolated (PMID 29743196)
chr1	6392567	6400182	6392968	6400070	-	SRR12	Cre01.g045600.t1.1		6399952,6399349,6398997,6398533,6398282,6398008,6397776,6397217,6396828,6396399,6396098,6395795,6395333,6394841,6393802,6393509,6392567	6400182,6399588,6399088,6398724,6398347,6398082,6397856,6397364,6397009,6396452,6396157,6395902,6395460,6394997,6393908,6393590,6393076	Speract/scavenger receptor cysteine-rich (SRCR) family protein, transmembrane glycoprotein
chr1	6400287	6415382	6401012	6414886	-	Cre01.g045601.t1.2	Cre01.g045601.t1.2		6415200,6414707,6413476,6413103,6412654,6412355,6412071,6411693,6411284,6410966,6410689,6410361,6409991,6409724,6409427,6409055,6408678,6408464,6407930,6407636,6407377,6407160,6406912,6406730,6406477,6406123,6405844,6405523,6405201,6404959,6404497,6403951,6402951,6402499,6402310,6401947,6401276,6400287	6415382,6414986,6414203,6413203,6412724,6412454,6412146,6411750,6411437,6411068,6410830,6410468,6410151,6409811,6409571,6409208,6408835,6408524,6408115,6407697,6407450,6407193,6406967,6406804,6406565,6406220,6405890,6405690,6405298,6405047,6404725,6404133,6403122,6402701,6402354,6402091,6401479,6401052	
chr1	6415438	6421602	6416403	6421447	-	Cre01.g045640.t1.2	Cre01.g045640.t1.2		6421405,6421233,6421019,6420689,6420378,6420052,6419425,6418845,6417925,6417408,6416921,6415438	6421602,6421287,6421089,6420766,6420412,6420143,6419594,6418944,6418202,6417526,6417125,6416613	
chr1	6421730	6425014	6421916	6423171	+	ZNJ3	Cre01.g045650.t1.2		6421730,6422337,6422577,6423013	6422082,6422446,6422649,6425014	contains a Zn-finger domain with CXXCXGXG motif, also found in DnaJ co-chaperones; probably organelle-targeted
chr1	6425113	6432474	6425189	6431832	+	CAT2	Cre01.g045700.t1.1		6425113,6425740,6426209,6426737,6427218,6427709,6428235,6428514,6428945,6429488,6430046,6430629,6431079,6431559	6425311,6425830,6426327,6426930,6427294,6427822,6428298,6428671,6429168,6429829,6430321,6430788,6431222,6432474	Haem-containing catalase-peroxidases, a bifunctional antioxidant enzyme that exhibit both catalase (EC:1.11.1.6) and peroxidase (EC:1.11.1.7) activity; functions as an oligomer; the primary structure of the subunit can be divided into two similar halves, which may have arisen from a gene duplication event; most related to bacterial homologues, localization unsure
chr1	6439297	6441892	6441131	6441309	-	Cre01.g045752.t1.1	Cre01.g045752.t1.1		6439297	6441892	
chr1	6444017	6448082	6444724	6447765	-	Cre01.g045800.t1.1	Cre01.g045800.t1.1		6447696,6447383,6447004,6446377,6445556,6445319,6444017	6448082,6447614,6447211,6446791,6445606,6445453,6445066	
chr1	6448983	6450824	6449485	6450777	+	Cre01.g045825.t1.1	Cre01.g045825.t1.1		6448983,6450534	6449980,6450824	
chr1	6450913	6458194	6451053	6457811	+	Cre01.g045850.t1.1	Cre01.g045850.t1.1		6450913,6456707,6457470	6456190,6456949,6458194	
chr1	6338767	6346232	6339832	6345996	-	Cre01.g045902.t1.1	Cre01.g045902.t1.1		6345981,6345681,6345015,6344571,6344232,6343821,6343215,6342590,6342166,6341772,6341288,6340617,6340293,6338767	6346232,6345860,6345260,6344666,6344330,6343886,6343371,6342726,6342277,6341852,6341433,6340719,6340396,6339973	
chr1	6458437	6464582	6459300	6464462	-	DGAT1	Cre01.g045903.t1.1		6464306,6463173,6462817,6461686,6461087,6460318,6459877,6458437	6464582,6463373,6462897,6461832,6461199,6460429,6459934,6459644	Catalyzes the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol. May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	6465126	6467358	6465429	6466247	+	Cre01.g045950.t1.1	Cre01.g045950.t1.1		6465126,6465660,6466043	6465462,6465761,6467358	
chr1	6467953	6478194	6468225	6476076	+	Cre01.g046052.t1.1	Cre01.g046052.t1.1		6467953,6468355,6468569,6469124,6470313,6470688,6473198,6474712	6468277,6468439,6468903,6469944,6470411,6472743,6474211,6478194	
chr1	6478273	6484454	6478525	6483906	+	Cre01.g046150.t1.1	Cre01.g046150.t1.1		6478273,6479425,6479934,6480576,6481332,6481716,6482353,6482714,6483117,6483645	6478885,6479497,6480088,6480975,6481393,6481879,6482490,6482826,6483226,6484454	
chr1	6484612	6500252	6485465	6499893	-	Cre01.g046237.t1.1	Cre01.g046237.t1.1		6500028,6499833,6498074,6497073,6496366,6495810,6495622,6495248,6492713,6492190,6491935,6491512,6491014,6490439,6489940,6489339,6488943,6488541,6488024,6487672,6487310,6486783,6486441,6485964,6484612	6500252,6499914,6499520,6497781,6496717,6496149,6495701,6495355,6494314,6492357,6491964,6491639,6491157,6490550,6490065,6489543,6489167,6488669,6488249,6487804,6487389,6486864,6486561,6486040,6485576	ts lethal mutations isolated (PMID 25336509)
chr1	6484612	6500252	6485465	6499893	-	Cre01.g046237.t2.1	Cre01.g046237.t2.1		6500028,6499833,6498086,6497073,6496366,6495810,6495622,6495248,6492713,6492190,6491935,6491512,6491014,6490439,6489940,6489339,6488943,6488541,6488024,6487672,6487310,6486783,6486441,6485964,6484612	6500252,6499914,6499520,6497781,6496717,6496149,6495701,6495355,6494314,6492357,6491964,6491639,6491157,6490550,6490065,6489543,6489167,6488669,6488249,6487804,6487389,6486864,6486561,6486040,6485576	ts lethal mutations isolated (PMID 25336509)
chr1	6542256	6550887	6546477	6549970	+	Cre01.g046250.t1.2	Cre01.g046250.t1.2		6542256,6546468,6547258,6547666,6549278,6549718	6542583,6546657,6547458,6548826,6549340,6550887	May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	6500353	6508821	6500417	6508672	+	Cre01.g046324.t1.1	Cre01.g046324.t1.1		6500353,6500847,6501821,6502372,6502923,6503299,6503725,6504322,6504591,6504989,6505592,6506193,6506564,6506822,6507911,6508423,6508618	6500534,6501209,6502078,6502545,6503086,6503407,6504006,6504411,6504700,6505258,6505735,6506301,6506674,6507556,6508032,6508537,6508821	
chr1	6581276	6585780	6581731	6584672	+	Cre01.g046450.t1.2	Cre01.g046450.t1.2		6581276,6581998,6582997,6583323,6584435	6581855,6582788,6583139,6584250,6585780	
chr1	6525686	6530183	6526146	6529084	+	Cre01.g046500.t1.2	Cre01.g046500.t1.2		6525686,6526110,6526413,6527412,6527738,6528847	6525891,6526270,6527203,6527554,6528665,6530183	
chr1	6531216	6535718	6531669	6534610	+	Cre01.g046501.t1.1	Cre01.g046501.t1.1		6531216,6531936,6532935,6533261,6534373	6531793,6532726,6533077,6534188,6535718	
chr1	6536716	6541215	6537166	6540107	+	Cre01.g046502.t1.1	Cre01.g046502.t1.1		6536716,6537433,6538432,6538758,6539870	6537290,6538223,6538574,6539685,6541215	
chr1	6346353	6350170	6347038	6349765	+	Cre01.g046600.t1.1	Cre01.g046600.t1.1		6346353,6346977,6347317,6348002,6348460,6349131	6346703,6347166,6347725,6348141,6348795,6350170	
chr1	6350172	6356702	6351235	6356307	-	Cre01.g046650.t1.2	Cre01.g046650.t1.2		6354894,6354572,6354311,6353974,6353635,6353384,6353141,6352612,6352252,6350172	6356702,6354742,6354407,6354118,6353832,6353448,6353234,6352987,6352338,6352063	
chr1	6356861	6359002	6357536	6358888	-	Cre01.g046652.t1.1	Cre01.g046652.t1.1		6358571,6358286,6357927,6356861	6359002,6358376,6358103,6357704	
chr1	6551262	6555217	6552080	6553840	+	MSP1	Cre01.g046800.t1.1		6551262,6551443,6551980,6552257,6552876,6553226,6553707	6551341,6551598,6552100,6552383,6552966,6553376,6555217	model transcript sequence is correct, but protein is described in wrong frame; CDS starts at position 6551288, with UGA-encoded Sec residues at positions 47 and 104 in the protein sequence; contains SECIS in 3'-UTR; the second, best conserved Sec is within first of four transmembrane segments; family is present in algae, Amoebas, Sphaeroforma, but not animals; Sec transformed to Cys in some Chlorophyceae (C. eustigma, C. moewusii)
chr1	6555326	6560275	6556047	6559055	+	UBC13	Cre01.g046850.t1.2		6555326,6556231,6556652,6557424,6557978,6558494,6558898	6556086,6556300,6556764,6557486,6558058,6558552,6560275	
chr1	6567826	6569307	6567893	6569018	+	Cre01.g046950.t1.2	Cre01.g046950.t1.2		6567826,6568376,6568812	6567956,6568508,6569307	
chr1	6569358	6571907	6569412	6571290	+	Cre01.g047001.t1.1	Cre01.g047001.t1.1		6569358,6570126,6570769,6571212	6569807,6570248,6570850,6571907	
chr1	6574706	6575710	6574745	6575136	+	Cre01.g047050.t1.2	Cre01.g047050.t1.2		6574706	6575710	
chr1	6576710	6581055	6578117	6580723	-	Cre01.g047100.t1.1	Cre01.g047100.t1.1		6580658,6579998,6579648,6578537,6576710	6581055,6580493,6579790,6579464,6578354	
chr1	6586816	6591137	6587265	6590203	+	Cre01.g047200.t1.1	Cre01.g047200.t1.1		6586816,6587229,6587532,6588531,6588857,6589966	6587010,6587389,6588322,6588673,6589784,6591137	
chr1	6586816	6591137	6587265	6590203	+	Cre01.g047200.t2.1	Cre01.g047200.t2.1		6586816,6587229,6587532,6588531,6588857,6589966	6587014,6587389,6588322,6588673,6589784,6591137	
chr1	6591486	6593897	6591710	6593846	+	Cre01.g047218.t1.2	Cre01.g047218.t1.2		6591486,6591963,6592372,6592799,6593626	6591878,6592268,6592478,6593380,6593897	
chr1	6593956	6598297	6593984	6597941	+	Cre01.g047229.t1.2	Cre01.g047229.t1.2		6593956,6594211,6594852,6595283,6595923,6596890,6597272,6597676	6594086,6594466,6595018,6595402,6596612,6596973,6597363,6598297	
chr1	6598706	6608552	6599292	6606282	+	PHC52	Cre01.g047265.t1.1		6598706,6599529,6600320,6601224,6601663,6602327,6602823,6604843,6605254,6605696,6606050	6599350,6599568,6600864,6601410,6602102,6602513,6604641,6605002,6605335,6605830,6608552	null-allele mutant was isolated (PMID 29743196)
chr1	6608560	6611225	6608886	6611067	-	Cre01.g047300.t1.2	Cre01.g047300.t1.2		6610941,6610703,6610422,6610085,6609612,6609362,6608560	6611225,6610758,6610605,6610201,6609725,6609443,6609146	
chr1	6611336	6617929	6611430	6617221	+	Cre01.g047350.t1.1	Cre01.g047350.t1.1		6611336,6611609,6612446,6612844,6613274,6614093,6614487,6615004,6615353,6616090,6616671	6611517,6612205,6612533,6613026,6613755,6614359,6614817,6615197,6615872,6616429,6617929	
chr1	6623746	6632667	6623840	6632207	+	Cre01.g047400.t1.1	Cre01.g047400.t1.1		6623746,6624177,6624373,6624703,6625252,6625533,6625922,6626168,6626339,6626664,6627136,6627501,6627778,6628055,6628507,6629018,6629482,6629803,6630119,6630432,6630923,6631569,6632066	6624092,6624300,6624520,6625054,6625284,6625636,6626027,6626216,6626426,6626833,6627383,6627605,6627860,6628181,6628894,6629240,6629602,6629850,6630220,6630605,6631381,6631805,6632667	
chr1	6632678	6634775	6633151	6634179	-	CPLD17	Cre01.g047450.t1.1		6634575,6634136,6633903,6633606,6632678	6634775,6634453,6633987,6633688,6633342	OTU-like cysteine protease.  Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr1	6634876	6641787	6634940	6641175	+	Cre01.g047500.t1.2	Cre01.g047500.t1.2		6634876,6635200,6636271,6637140,6637512,6638082,6638490,6639048,6639360,6639598,6639958,6640240,6640840	6635035,6636052,6636837,6637280,6637648,6638173,6638839,6639215,6639398,6639699,6640020,6640384,6641787	
chr1	6641792	6644225	6642646	6644062	-	RAB6	Cre01.g047550.t1.2		6644020,6643847,6643711,6643532,6643307,6643001,6641792	6644225,6643927,6643781,6643620,6643418,6643091,6642796	Hypothetical Conserved Protein. Similar to the RabH/Rab6 type of small GTPase, involved in intra-Golgi vesicle trafficking
chr1	6644413	6646745	6645022	6646493	-	Cre01.g047600.t1.2	Cre01.g047600.t1.2		6646738,6646150,6645814,6645471,6644413	6646745,6646531,6645920,6645633,6645156	; 3-oxoacyl-[acyl-carrier-protein] reductase-related protein
chr1	6646846	6650544	6646956	6649949	+	Cre01.g047650.t1.2	Cre01.g047650.t1.2		6646846,6647315,6647731,6648110,6648567,6649002,6649483,6649862	6647128,6647572,6647921,6648391,6648749,6649103,6649644,6650544	
chr1	6650723	6656265	6651235	6655812	-	CYN40	Cre01.g047700.t1.2		6656256,6655742,6655450,6655010,6654550,6654325,6653783,6653400,6652922,6652381,6652024,6651708,6650723	6656265,6655893,6655493,6655112,6654706,6654394,6653836,6653478,6653049,6652532,6652150,6651777,6651315	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; C-terminal TPR domain involved in HSP90 interaction; cytosolic; similar to At2g15790 (AtCYP40, CYP40) and AT2G38730 (AtCYP22)
chr1	6656386	6659284	6656460	6658832	+	RPL18A	Cre01.g047750.t1.2		6656386,6656610,6656945,6658487	6656472,6656737,6657008,6659284	Cytosolic 60S large ribosomal subunit protein L18a
chr1	6659346	6662827	6659948	6662246	+	GRX6	Cre01.g047800.t1.1		6659346,6660340,6660877,6661317,6661798,6662135	6660206,6660469,6661043,6661400,6661893,6662827	Glutaredoxin 6, CGFS type glutaredoxin, probably chloroplastic. GRX domain on C-terminal part. N-terminal part: no homology with proteins of known function but strong homology with synechocystis slr1035. PMID: 16328797
chr1	6662830	6668395	6662987	6668351	-	Cre01.g047850.t1.2	Cre01.g047850.t1.2		6668255,6668041,6667714,6667416,6667163,6666890,6666517,6666191,6664171,6663859,6663450,6662830	6668395,6668061,6667872,6667491,6667209,6666925,6666606,6666344,6664247,6663981,6663607,6663201	
chr1	6668470	6673090	6668943	6672900	-	Cre01.g047900.t1.1	Cre01.g047900.t1.1		6672830,6672667,6672507,6672033,6671551,6671239,6670897,6670564,6670142,6669839,6669448,6668470	6673090,6672761,6672569,6672149,6671703,6671352,6671007,6670632,6670317,6669947,6669582,6669090	
chr1	6674452	6676061	6674511	6675629	+	IFT27	Cre01.g047950.t1.1		6674452,6674657,6674843,6675228,6675518	6674578,6674736,6675060,6675366,6676061	Small GTPase distantly related to Rab-like proteins from mammals, found in the flagellar proteome [PMID: 15998802]; belongs to core of IFT-B particle
chr1	6676226	6686485	6676399	6686348	-	Cre01.g048000.t1.1	Cre01.g048000.t1.1		6686222,6686040,6685795,6685455,6685208,6684983,6684721,6684526,6684267,6683947,6683629,6683320,6683059,6682756,6682508,6682203,6681921,6681607,6681211,6681026,6680751,6680586,6680415,6680101,6679942,6679570,6679311,6678983,6678566,6678270,6678065,6677635,6677379,6677057,6676226	6686485,6686140,6685926,6685518,6685318,6685039,6684879,6684614,6684375,6684119,6683791,6683484,6683193,6682893,6682597,6682354,6682104,6681761,6681451,6681115,6680918,6680633,6680483,6680301,6679983,6679793,6679429,6679176,6678860,6678416,6678162,6677956,6677533,6677237,6676959	
chr1	6686608	6689572	6686740	6689083	+	COA3	Cre01.g048050.t1.2		6686608,6687352,6687883,6688178,6688381,6688801	6687043,6687669,6687984,6688231,6688479,6689572	4-phospho-panto-thenoylcysteine synthetase/phosphopantothenate-cysteine ligase.  Probably catalyzes the second and third steps (out of five) of CoA synthesis from pantothenate
chr1	6689590	6696775	6690472	6696251	-	Cre01.g048100.t1.1	Cre01.g048100.t1.1		6696423,6696173,6695857,6694991,6693686,6692866,6692515,6690943,6689590	6696775,6696311,6696009,6695644,6694747,6693518,6692674,6692370,6690472	
chr1	6696920	6703835	6697219	6703753	-	Cre01.g048102.t1.2	Cre01.g048102.t1.2		6703479,6702926,6702570,6702251,6701208,6698601,6698310,6697888,6696920	6703835,6703260,6702672,6702399,6702040,6700968,6698408,6698168,6697640	
chr1	6703886	6706385	6704290	6706305	-	HLA8	Cre01.g048150.t1.2		6706198,6705936,6705660,6705262,6704815,6703886	6706385,6706071,6705812,6705365,6704901,6704576	Staphylococcal nuclease homolog. Thermonuclease family. Induced under high light condition [PMID: 12000678]. A part of post-transcriptional gene silencing machinery [PMID: 11782532]
chr1	6712049	6721154	6712474	6720945	-	Cre01.g048200.t1.1	Cre01.g048200.t1.1		6720440,6718974,6718707,6717913,6717523,6717303,6716167,6715758,6715415,6715081,6714840,6714399,6714064,6713871,6713502,6713254,6712049	6721154,6720308,6718818,6718539,6717714,6717363,6717091,6715984,6715552,6715224,6714937,6714653,6714244,6713930,6713729,6713350,6713094	
chr1	6721202	6723924	6721658	6723747	-	Cre01.g048250.t1.2	Cre01.g048250.t1.2		6723680,6723363,6722934,6722744,6722355,6722025,6721202	6723924,6723442,6723005,6722821,6722498,6722174,6721775	
chr1	6724045	6727996	6724317	6727676	+	Cre01.g048300.t1.1	Cre01.g048300.t1.1		6724045,6724608,6725409,6726956	6724476,6725243,6726755,6727996	
chr1	6727999	6732124	6728344	6732059	-	CGL53	Cre01.g048350.t1.2		6731957,6731599,6731416,6731220,6730973,6730804,6730433,6730146,6729825,6729590,6729364,6729155,6727999	6732124,6731688,6731464,6731289,6731032,6730845,6730622,6730242,6729972,6729666,6729443,6729242,6729030	Conserved in the Green Lineage
chr1	6732235	6741306	6732370	6741004	+	Cre01.g048400.t1.1	Cre01.g048400.t1.1		6732235,6732805,6733197,6733586,6733889,6734031,6734193,6734411,6734694,6734953,6735184,6735475,6735631,6735910,6736096,6736354,6736531,6736775,6737308,6737681,6737956,6738776,6739375,6739613,6739858,6740104,6740507,6740754,6740929	6732598,6733001,6733416,6733729,6733925,6734073,6734258,6734521,6734793,6735041,6735320,6735520,6735787,6735975,6736171,6736412,6736629,6737205,6737509,6737829,6738585,6739252,6739445,6739726,6739969,6740341,6740596,6740840,6741306	
chr1	6741313	6746304	6741698	6746203	-	Cre01.g048450.t1.1	Cre01.g048450.t1.1		6745573,6744430,6744019,6743454,6743020,6742675,6741313	6746304,6745380,6744158,6743515,6743192,6742772,6742509	
chr1	6746353	6748674	6746840	6748541	-	Cre01.g048501.t1.1	Cre01.g048501.t1.1		6748514,6748377,6748032,6747768,6746353	6748674,6748450,6748201,6747881,6747703	
chr1	6748963	6753424	6749540	6753023	-	Cre01.g048550.t1.1	Cre01.g048550.t1.1		6752375,6751684,6751321,6750824,6750388,6750097,6748963	6753424,6752223,6751460,6750885,6750476,6750186,6749834	
chr1	6753699	6760284	6754274	6759721	-	Cre01.g048600.t1.1	Cre01.g048600.t1.1		6759127,6758476,6757682,6757296,6757106,6756690,6756413,6755799,6755613,6755294,6754936,6753699	6760284,6758979,6758368,6757535,6757160,6756979,6756481,6756251,6755652,6755485,6755054,6754802	
chr1	6760435	6764495	6760534	6762608	+	Cre01.g048650.t1.1	Cre01.g048650.t1.1		6760435,6760935,6761091,6761285,6761866,6762325	6760795,6760977,6761167,6761460,6762129,6764495	
chr1	6764529	6771524	6765181	6770909	-	Cre01.g048701.t1.1	Cre01.g048701.t1.1		6770048,6769702,6769332,6768929,6768553,6768019,6767571,6766869,6765809,6764529	6771524,6769769,6769448,6768998,6768726,6768131,6767663,6766983,6766573,6765532	
chr1	6771579	6774128	6772114	6773995	-	PPR7	Cre01.g048750.t1.2		6773848,6773440,6772730,6771579	6774128,6773650,6772867,6772284	
chr1	6774179	6776224	6774457	6776197	-	Cre01.g048800.t1.1	Cre01.g048800.t1.1		6776014,6775865,6775382,6774745,6774179	6776224,6775942,6775723,6775019,6774584	Related to GCN5
chr1	6776785	6782324	6778307	6781419	-	Cre01.g048850.t1.2	Cre01.g048850.t1.2		6782187,6781227,6780892,6780443,6780049,6776785	6782324,6781447,6781113,6780607,6780167,6779886	
chr1	6782808	6791284	6783224	6791156	-	Cre01.g048900.t1.1	Cre01.g048900.t1.1		6791033,6790255,6789806,6789266,6788846,6788120,6787625,6786408,6785924,6784806,6784158,6783841,6783603,6782808	6791284,6790427,6789917,6789571,6788981,6788499,6787879,6787171,6786056,6785696,6784682,6783897,6783680,6783320	Global transcription factor containing Bromodomain, which may interact specifically with acetylated lysines.  ChromoDB GTE343
chr1	6791405	6797138	6791673	6796536	+	PYR5	Cre01.g048950.t1.2		6791405,6791880,6792249,6792647,6793311,6793876,6794387,6794729,6795136,6795469,6795898,6796330	6791760,6791939,6792347,6792778,6793436,6794043,6794481,6794870,6795235,6795660,6796035,6797138	Uridine 5'- monophosphate synthase (orotate phosphoribosyltransferase / orotidine-5'-phosphate decarboxylase); pyrimidine biosynthesis pathway; probably mitochondrion located, while higher plant and metazoan enzyme is cytosolic
chr1	6797438	6799596	6797469	6799016	+	CGL31	Cre01.g049000.t1.2		6797438,6797597,6797776,6797992,6798470,6798918	6797499,6797716,6797867,6798103,6798668,6799596	
chr1	6799599	6802356	6800313	6802245	-	Cre01.g049050.t1.2	Cre01.g049050.t1.2		6802173,6802049,6801674,6801391,6800922,6799599	6802356,6802099,6801781,6801483,6801047,6800589	
chr1	6802485	6811334	6802892	6810384	+	Cre01.g049100.t1.1	Cre01.g049100.t1.1		6802485,6803326,6803797,6804148,6804457,6804747,6805073,6808159,6808689,6809174,6809502,6809763,6810361	6803005,6803620,6803973,6804281,6804515,6804892,6808054,6808533,6808909,6809280,6809602,6810171,6811334	
chr1	6811509	6812804	6811993	6812216	-	Cre01.g049117.t1.1	Cre01.g049117.t1.1		6812622,6811509	6812804,6812225	
chr1	6812910	6819216	6812938	6816900	+	Cre01.g049132.t2.1	Cre01.g049132.t2.1		6812910,6813652,6813778,6814103,6814474,6814785,6815118,6815547,6815932,6816384,6816693	6813467,6813685,6813901,6814261,6814566,6814925,6815340,6815735,6816211,6816477,6819216	
chr1	6812605	6819216	6812938	6816900	+	Cre01.g049132.t1.2	Cre01.g049132.t1.2		6812605,6813652,6813778,6814103,6814474,6814785,6815118,6815547,6815932,6816384,6816693	6813467,6813685,6813901,6814261,6814566,6814925,6815340,6815735,6816211,6816477,6819216	
chr1	6820449	6830964	6821445	6830086	-	Cre01.g049200.t1.1	Cre01.g049200.t1.1		6830662,6830264,6829718,6827907,6827769,6827538,6827272,6826961,6826743,6826516,6826214,6825961,6825507,6824714,6824387,6824044,6823611,6823329,6822983,6822782,6822407,6820449	6830964,6830330,6830115,6828124,6827813,6827641,6827409,6827029,6826841,6826582,6826384,6826029,6825736,6825260,6824568,6824121,6823824,6823378,6823058,6822846,6822588,6822118	
chr1	6832395	6836116	6832704	6833241	+	Cre01.g049250.t1.2	Cre01.g049250.t1.2		6832395,6833219	6832982,6836116	
chr1	6837510	6842234	6838190	6841555	-	Cre01.g049300.t1.1	Cre01.g049300.t1.1		6840598,6840305,6839975,6839381,6837510	6842234,6840427,6840105,6839686,6839178	
chr1	6842295	6847994	6843176	6847859	-	Cre01.g049350.t1.1	Cre01.g049350.t1.1		6847824,6847631,6847360,6847066,6846773,6846479,6846269,6845952,6845648,6845368,6845043,6844680,6844414,6843952,6843563,6843363,6842295	6847994,6847733,6847521,6847100,6846893,6846556,6846307,6846065,6845696,6845483,6845107,6844747,6844508,6844146,6843667,6843422,6843236	
chr1	6848095	6850712	6848229	6850412	+	Cre01.g049400.t1.2	Cre01.g049400.t1.2		6848095,6848547,6848975,6849288	6848272,6848768,6849124,6850712	
chr1	6850719	6852914	6851247	6852702	-	Cre01.g049450.t1.2	Cre01.g049450.t1.2		6852579,6852451,6852263,6852047,6851680,6850719	6852914,6852513,6852338,6852162,6851839,6851390	
chr1	6853369	6854952	6854248	6854898	-	COX2B	Cre01.g049500.t1.2		6854461,6853369	6854952,6854273	In C. reinhardtii, subunit II is nuclear encoded with the N-terminal and C-terminal parts of the protein encoded by separate genes - N-terminus by COX2A and C-terminus by COX2B; respiratory complex IV; terminal oxidase of respiratory electron transport chain; heme-protein complex [PMID: 11094061; PMID: 11675593]
chr1	6854999	6858154	6855350	6858133	-	Cre01.g049550.t1.2	Cre01.g049550.t1.2		6858088,6857957,6857734,6857371,6856235,6855866,6855617,6854999	6858154,6858030,6857882,6857490,6857187,6856036,6855733,6855440	
chr1	6858209	6860964	6859277	6860854	-	CGLD22	Cre01.g049600.t1.2		6860579,6859685,6858209	6860964,6860446,6859407	
chr1	6862606	6872864	6863468	6872736	-	Cre01.g049650.t1.1	Cre01.g049650.t1.1		6872707,6872607,6872230,6872005,6871628,6871195,6870949,6870755,6869731,6869303,6867670,6862606	6872864,6872641,6872335,6872133,6871886,6871512,6871074,6870827,6870659,6869579,6869086,6867540	
chr1	6873295	6878288	6873677	6877723	+	Cre01.g049750.t1.2	Cre01.g049750.t1.2		6873295,6874419,6876052,6877370	6873902,6874604,6876172,6878288	
chr1	6879928	6923528	6881091	6922488	+	PHC59	Cre01.g049826.t1.1		6879928,6881018,6881869,6882208,6882495,6883991,6912967,6916252,6917392,6917688,6917951,6918506,6918838,6919233,6919885,6920292,6920794,6921139,6921489,6921715,6922220,6922452	6880512,6881641,6881961,6882306,6883799,6884750,6914783,6917273,6917507,6917794,6918264,6918650,6918931,6919778,6920047,6920542,6920963,6921221,6921611,6921779,6922298,6923528	null-allele passenger mutation was isolated (PMID 29743196)
chr1	6924508	6928437	6925205	6928195	+	Cre01.g049900.t1.1	Cre01.g049900.t1.1		6924508,6925149,6925317,6925505,6925758,6926027,6926298,6926620,6926921,6927433,6927847	6924892,6925223,6925373,6925591,6925889,6926107,6926444,6926730,6927154,6927555,6928437	
chr1	6928626	6936822	6928789	6935814	+	VLE1	Cre01.g049950.t1.1		6928626,6929023,6929324,6929720,6929913,6930202,6930427,6930690,6930997,6931257,6931481,6931880,6932176,6932361,6932646,6932909,6933149,6933492,6933815,6934128,6934435,6934750,6935034,6935406	6928882,6929142,6929528,6929807,6930034,6930324,6930553,6930792,6931122,6931347,6931702,6931973,6932251,6932442,6932724,6932984,6933371,6933654,6933965,6934253,6934572,6934847,6935253,6936822	subtilisin-like protease involved in the digestion of the sporangial/mother cell wall and hatching of daughter cells after mitosis in the Chlamydomonas vegetative cell cycle.  Characterized by Kubo et al. (2009) [PMID: 19179351]; null-allele mutant was isolated (PMID 29743196)
chr1	6938547	6941887	6939424	6941835	-	Cre01.g050000.t1.2	Cre01.g050000.t1.2		6941747,6941497,6939850,6938547	6941887,6941573,6940005,6939610	
chr1	6941942	6945857	6942195	6945742	-	GUM1	Cre01.g050050.t1.2		6945613,6945168,6944522,6944165,6943580,6943038,6942722,6941942	6945857,6945260,6944661,6944265,6943860,6943215,6942848,6942394	Putative guanidinoacetate N-methyltransferase with ankryin domain
chr1	6946001	6950914	6946401	6950890	-	DPD1	Cre01.g050100.t1.2		6950824,6950509,6950170,6949625,6949328,6948979,6948693,6948455,6948231,6947764,6947420,6947075,6946776,6946001	6950914,6950602,6950252,6949735,6949440,6949075,6948770,6948520,6948311,6947892,6947549,6947202,6946848,6946574	putative diaminopimelate (DAP) decarboxylase (EC:4.1.1.20); lysine synthesis enzyme (LysA); organelle (mitochondria) targeting predicted by Target-P; plastid location expected based on homology
chr1	6951055	6957310	6951354	6956086	+	NFO1	Cre01.g050150.t1.1		6951055,6951779,6952071,6952321,6952738,6954155,6954493,6954999,6955394,6955771,6956056	6951562,6951850,6952168,6952443,6952803,6954244,6954679,6955150,6955493,6955877,6957310	
chr1	6958612	6960907	6959682	6960744	-	CSB9	Cre01.g050200.t1.2		6960150,6959921,6958612	6960907,6960031,6959805	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr1	6968038	6969259	6968464	6969243	+	Cre01.g050300.t1.1	Cre01.g050300.t1.1		6968038,6968866,6969108,6969232	6968602,6969028,6969158,6969259	
chr1	6969308	6972453	6969832	6970354	+	Cre01.g050316.t1.1	Cre01.g050316.t1.1		6969308,6969521,6969798,6970285	6969409,6969600,6969928,6972453	
chr1	6969308	6972453	6969832	6970354	+	Cre01.g050316.t2.1	Cre01.g050316.t2.1		6969308,6969521,6969798,6970285	6969409,6969651,6969928,6972453	
chr1	6972962	6977057	6973895	6976495	-	RBL6	Cre01.g050350.t1.1		6976480,6976321,6975936,6975669,6975398,6975026,6974644,6972962	6977057,6976379,6976045,6975784,6975474,6975172,6974830,6974369	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579)
chr1	6977168	6979351	6977276	6978394	+	TIM22C	Cre01.g050400.t1.2		6977168,6977880	6977602,6979351	Similar to mitochondrial import inner membrane translocase TIM22, belongs to theTIM17/TIM22/TIM23 family. Four TIM22-related proteins are present in Arabidopsis, three in Chlamydomonas
chr1	6977168	6979351	6977522	6978394	+	TIM22C	Cre01.g050400.t2.1		6977168,6977880	6977602,6979351	Similar to mitochondrial import inner membrane translocase TIM22, belongs to theTIM17/TIM22/TIM23 family. Four TIM22-related proteins are present in Arabidopsis, three in Chlamydomonas
chr1	6979552	6988217	6980587	6987823	-	TTL6	Cre01.g050451.t1.1		6987806,6987419,6987166,6986814,6986297,6985946,6985694,6985399,6985105,6984601,6984281,6983960,6983300,6982997,6982243,6979552	6988217,6987518,6987201,6986943,6986505,6986020,6985756,6985536,6985234,6984934,6984368,6984085,6983728,6983106,6982719,6982064	
chr1	6988428	6994456	6988527	6993665	+	TCB1	Cre01.g050500.t1.1		6988428,6989215,6989785,6990374,6991280,6992459,6992956,6993512	6988939,6989333,6990184,6990633,6992221,6992653,6993189,6994456	PentratricoPeptide Repeat protein; homologous to HCF152 and containing a similar C-terminal domain
chr1	6994689	6996007	6995202	6995847	-	Cre01.g050550.t1.2	Cre01.g050550.t1.2		6995706,6995583,6995437,6994689	6996007,6995639,6995465,6995266	
chr1	6996432	7002327	6996989	7002114	-	Cre01.g050600.t1.1	Cre01.g050600.t1.1		7001999,7001694,7001040,7000335,7000035,6999547,6999172,6998719,6997822,6997465,6996432	7002327,7001770,7001175,7000737,7000086,6999690,6999306,6998856,6997988,6997558,6997166	
chr1	7002370	7011655	7004734	7011444	-	Cre01.g050608.t1.1	Cre01.g050608.t1.1		7010422,7010039,7009086,7007759,7002370	7011655,7010143,7009901,7008944,7007557	
chr1	7002370	7011655	7004734	7011444	-	Cre01.g050608.t2.1	Cre01.g050608.t2.1		7010422,7010039,7009086,7007768,7002370	7011655,7010143,7009901,7008944,7007557	
chr1	7011710	7015505	7012478	7014716	-	Cre01.g050616.t1.1	Cre01.g050616.t1.1		7015121,7014898,7014211,7013021,7011710	7015505,7015012,7014732,7013112,7012478	
chr1	7011710	7015525	7012478	7015279	-	Cre01.g050624.t1.1	Cre01.g050624.t1.1		7015274,7015121,7014898,7014211,7013021,7011710	7015525,7015203,7015026,7014732,7013112,7012478	
chr1	7011710	7015525	7012478	7015210	-	Cre01.g050624.t2.1	Cre01.g050624.t2.1		7015125,7014898,7014211,7013021,7011710	7015525,7015026,7014732,7013112,7012478	
chr1	7015846	7025077	7016068	7024001	+	Cre01.g050650.t1.2	Cre01.g050650.t1.2		7015846,7016188,7016418,7016656,7017172,7017538,7018118,7018511,7018886,7019202,7019490,7019931,7020385,7020736,7021154	7016091,7016245,7016472,7017014,7017288,7017786,7018289,7018680,7019006,7019263,7019683,7020121,7020434,7020906,7025077	
chr1	7026656	7031017	7026860	7030573	+	Cre01.g050700.t1.1	Cre01.g050700.t1.1		7026656,7027360,7027528,7027869,7028229,7028486,7028708,7028953,7029451,7029802,7030129	7026974,7027411,7027642,7027925,7028328,7028579,7028774,7029130,7029600,7029945,7031017	
chr1	7026656	7031017	7026860	7030573	+	Cre01.g050700.t2.1	Cre01.g050700.t2.1		7026656,7027360,7027528,7027869,7028229,7028486,7028708,7028953,7029451,7029802,7030132	7026974,7027411,7027642,7027925,7028328,7028579,7028774,7029130,7029600,7029945,7031017	
chr1	7031066	7036531	7031487	7035702	+	Cre01.g050750.t1.1	Cre01.g050750.t1.1		7031066,7031739,7032092,7032278,7032984,7033200,7033500,7033765,7033907,7034053,7034358,7034625	7031559,7031849,7032153,7032431,7033080,7033322,7033627,7033797,7033954,7034121,7034507,7036531	null-allele passenger mutation was isolated (PMID 29743196)
chr1	7037126	7044497	7037264	7044043	+	Cre01.g050800.t1.1	Cre01.g050800.t1.1		7037126,7037347,7037689,7037884,7038211,7038457,7038857,7039114,7039486,7039667,7039920,7040096,7040436,7040722,7040935,7041130,7041347,7041567,7041769,7042405,7042620,7042888,7043112,7043346,7043609,7043773	7037279,7037476,7037762,7038095,7038367,7038702,7038952,7039389,7039575,7039774,7039973,7040275,7040558,7040784,7040991,7041237,7041493,7041626,7041879,7042492,7042726,7042953,7043197,7043508,7043656,7044497	
chr1	7046335	7052187	7046591	7051108	+	PKL1	Cre01.g050850.t1.2		7046335,7046833,7046987,7047215,7047374,7047719,7048083,7048432,7049166,7049453,7049766,7050134,7050451,7050757	7046739,7046907,7047132,7047297,7047565,7047950,7048235,7048968,7049180,7049609,7049992,7050322,7050618,7052187	Serine/threonine protein phosphatase 1 Beta (PP1b); has a Kelch repeat at the N-terminus; found in the flagellar proteome [PMID: 15998802]. Similar to Arabidopsis BSL phosphatases. ts-lethal mutations block in G2 (PMID 25336509)
chr1	7046335	7052187	7046591	7051108	+	PKL1	Cre01.g050850.t2.1		7046335,7046833,7046987,7047215,7047374,7047719,7048083,7048432,7049453,7049766,7050134,7050451,7050757	7046739,7046907,7047132,7047297,7047565,7047950,7048235,7048968,7049609,7049992,7050322,7050618,7052187	Serine/threonine protein phosphatase 1 Beta (PP1b); has a Kelch repeat at the N-terminus; found in the flagellar proteome [PMID: 15998802]. Similar to Arabidopsis BSL phosphatases. ts-lethal mutations block in G2 (PMID 25336509)
chr1	7052326	7054967	7052780	7054583	+	Cre01.g050900.t1.1	Cre01.g050900.t1.1		7052326,7052711,7052912,7053624,7053964,7054206,7054490	7052606,7052807,7053421,7053737,7054029,7054298,7054967	
chr1	7057409	7061075	7058375	7060831	-	Cre01.g050950.t1.2	Cre01.g050950.t1.2		7060483,7059927,7059072,7058697,7057409	7061075,7060256,7059667,7058823,7058489	
chr1	7062109	7066026	7062202	7065752	+	Cre01.g051000.t1.1	Cre01.g051000.t1.1		7062109,7062545,7062976,7063319,7063597,7064010,7064352,7064640,7064850,7065133,7065371,7065595	7062340,7062724,7063164,7063432,7063705,7064139,7064436,7064699,7064998,7065215,7065455,7066026	Ribosomal L11 methyltransferase-like; null-allele mutant was isolated (PMID 29743196)
chr1	7066456	7071310	7066567	7070288	+	FAP225	Cre01.g051050.t1.2		7066456,7066728,7066959,7067159,7067473,7067704,7068031,7068375,7068716,7070152	7066635,7066772,7067015,7067315,7067565,7067856,7068213,7068521,7069953,7071310	Flagellar Associated Protein, found in the flagellar proteome
chr1	7071856	7077573	7072138	7077183	+	Cre01.g051100.t1.2	Cre01.g051100.t1.2		7071856,7072808,7073212,7073596,7074044,7074347,7075784,7076156,7076540,7076901	7072510,7072978,7073421,7073766,7074170,7074576,7075939,7076293,7076737,7077573	
chr1	7077646	7078437	7077764	7078405	+	Cre01.g051137.t1.1	Cre01.g051137.t1.1		7077646,7078054,7078327	7077845,7078182,7078437	
chr1	7078516	7088297	7079221	7086637	+	Cre01.g051174.t1.1	Cre01.g051174.t1.1		7078516,7082514,7082679,7083177,7083567,7084753	7082190,7082589,7082783,7083263,7084502,7088297	Basic-leucine zipper (bZIP) transcription factor, related to JUN transcription factor
chr1	7088526	7093788	7088593	7093697	+	Cre01.g051211.t1.1	Cre01.g051211.t1.1		7088526,7090138,7090502,7090927,7091092,7091361,7091640,7091964,7092371,7092662	7089975,7090213,7090748,7090959,7091188,7091420,7091697,7092101,7092466,7093788	
chr1	7093795	7096710	7094703	7096597	-	DLE1	Cre01.g051250.t1.2		7096540,7096314,7095600,7095122,7093795	7096710,7096451,7095731,7095172,7094805	LC4 component of outer arm dynein; calmodulin homolog.
chr1	7096816	7105697	7097036	7105208	+	Cre01.g051300.t1.1	Cre01.g051300.t1.1		7096816,7097306,7097674,7097960,7098335,7098727,7099159,7099596,7099915,7100260,7100702,7100939,7101360,7101693,7101984,7102403,7102808,7103761,7104339,7104652,7104953	7097087,7097476,7097799,7098100,7098397,7098867,7099385,7099710,7100042,7100400,7100795,7101147,7101460,7101793,7102131,7102629,7102921,7103936,7104426,7104801,7105697	
chr1	7105700	7109825	7105872	7109749	-	Cre01.g051350.t1.1	Cre01.g051350.t1.1		7109734,7108995,7108562,7108355,7108159,7107760,7106983,7106688,7106358,7105700	7109825,7109474,7108831,7108372,7108224,7108001,7107392,7106850,7106525,7106194	
chr1	7109946	7112877	7110056	7111822	+	ERD2A	Cre01.g051400.t1.2		7109946,7110263,7110432,7111019,7111396,7111721	7110150,7110344,7110615,7111134,7111469,7112877	Expressed Protein. Conserved protein similar to KDEL receptor involved in ER retention of lumenal proteins.
chr1	7109946	7112877	7110444	7111822	+	ERD2A	Cre01.g051400.t2.1		7109946,7110263,7110432,7111019,7111396,7111721	7110150,7110344,7110615,7111134,7111469,7112877	Expressed Protein. Conserved protein similar to KDEL receptor involved in ER retention of lumenal proteins.
chr1	7112968	7115155	7113711	7114659	-	Cre01.g051450.t1.1	Cre01.g051450.t1.1		7114908,7114574,7114345,7114136,7112968	7115155,7114660,7114400,7114243,7113969	
chr1	7112968	7115155	7113711	7114659	-	Cre01.g051450.t2.1	Cre01.g051450.t2.1		7114874,7114574,7114345,7114136,7112968	7115155,7114660,7114400,7114243,7113969	
chr1	7115256	7116794	7115698	7116269	+	Cre01.g051466.t1.1	Cre01.g051466.t1.1		7115256,7115826	7115726,7116794	
chr1	7118126	7119547	7118492	7119095	+	Cre01.g051482.t1.1	Cre01.g051482.t1.1		7118126,7118947	7118533,7119547	
chr1	7122680	7124615	7123308	7124552	-	ULP1	Cre01.g051500.t1.2		7124516,7124291,7123785,7123526,7122680	7124615,7124378,7123865,7123632,7123350	
chr1	7124716	7139845	7124816	7139084	+	HEL8	Cre01.g051550.t1.1		7124716,7125104,7125802,7126084,7126502,7127061,7127568,7128152,7128591,7128888,7129205,7130103,7130396,7130872,7131540,7132029,7132380,7132974,7133319,7133722,7134025,7136444,7136787,7137394,7137793,7138216	7124968,7125443,7125861,7126201,7126681,7127158,7127717,7128373,7128694,7128972,7129327,7130188,7130459,7130988,7131663,7132105,7132711,7133121,7133520,7133801,7134188,7136591,7137074,7137632,7138053,7139845	contains a conserved C-terminal C2H2 Zn-finger domain; this particular helicase has been identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia
chr1	7141726	7143951	7141862	7143550	+	Cre01.g051625.t1.1	Cre01.g051625.t1.1		7141726,7142778	7141924,7143951	null-allele mutant was isolated (PMID 29743196)
chr1	7192701	7198230	7192924	7196950	+	Cre01.g051700.t1.1	Cre01.g051700.t1.1		7192701,7193262,7193396,7194810,7195313,7196001,7196199,7196497,7196883	7193042,7193311,7194649,7195094,7195862,7196080,7196335,7196664,7198230	
chr1	7192701	7198230	7192924	7196950	+	Cre01.g051700.t2.1	Cre01.g051700.t2.1		7192701,7193262,7193396,7195313,7196001,7196199,7196497,7196883	7193042,7193311,7194649,7195862,7196080,7196335,7196664,7198230	
chr1	7198411	7206255	7199059	7205057	+	Cre01.g051750.t1.1	Cre01.g051750.t1.1		7198411,7199004,7199389,7199593,7199903,7200202,7200396,7200679,7200968,7201246,7201581,7201890,7202901,7203750,7204083,7204582,7204973	7198775,7199173,7199457,7199708,7200001,7200272,7200506,7200779,7201063,7201320,7201713,7202731,7203574,7203890,7204320,7204794,7206255	
chr1	7198411	7207232	7199059	7205057	+	Cre01.g051750.t2.1	Cre01.g051750.t2.1		7198411,7199004,7199389,7199593,7199903,7200202,7200396,7200679,7200968,7201246,7201581,7201890,7202901,7203750,7204083,7204582,7204973	7198775,7199173,7199457,7199708,7200001,7200272,7200506,7200779,7201063,7201320,7201713,7202731,7203574,7203890,7204320,7204794,7207232	
chr1	7207255	7212170	7208174	7212046	-	AST2	Cre01.g051800.t1.1		7212004,7211723,7211455,7211293,7211131,7210906,7210674,7210274,7209956,7209695,7209281,7208920,7208490,7207255	7212170,7211818,7211570,7211338,7211137,7210931,7210766,7210415,7210063,7209753,7209454,7209031,7208678,7208299	Transaminase A; Target-P gives weak prediction of mitochondrial targeting
chr1	7212427	7217720	7212831	7216957	-	Cre01.g051850.t1.1	Cre01.g051850.t1.1		7217515,7217129,7216821,7214834,7213894,7213537,7213208,7212427	7217720,7217402,7217022,7216683,7214697,7213733,7213331,7213062	
chr1	7217851	7219662	7217949	7219641	+	Cre01.g051875.t1.1	Cre01.g051875.t1.1		7217851,7218142,7218245,7218525,7218828,7219080,7219236,7219641	7218082,7218169,7218318,7218627,7218933,7219122,7219333,7219662	
chr1	7219711	7221792	7220068	7221307	+	RIP1	Cre01.g051900.t1.2		7219711,7220309,7220511,7220738,7221109	7220225,7220399,7220649,7220941,7221792	
chr1	7221795	7226310	7222180	7226091	-	ASP2	Cre01.g051950.t1.2		7225993,7225802,7225428,7225011,7224644,7224341,7224015,7223816,7223448,7221795	7226310,7225922,7225554,7225186,7224719,7224468,7224164,7223857,7223627,7223224	Aspartic peptidase, pepsin (A1) family; similar to chloroplast nucleoid DNA binding protein (CND41) identified in tobacco (PMID: 10683432); its reported chloroplast localization is uncertain, and it usually shows a typical signal peptide; could be secreted or lysosomial
chr1	7226441	7231202	7226493	7230055	+	Cre01.g052000.t1.2	Cre01.g052000.t1.2		7226441,7226641,7227181,7227484,7227891,7228237,7228531,7228864,7229627,7229905	7226548,7226709,7227314,7227564,7228033,7228357,7228664,7229349,7229741,7231202	
chr1	7231251	7233554	7231447	7233197	+	CBP3	Cre01.g052050.t1.2		7231251,7231564,7231924,7232132,7232520,7232716,7232929	7231492,7231735,7231983,7232307,7232588,7232792,7233554	Ubiquinol-cytochrome C chaperone family protein [PMID: 1571684]; [= human QCRAF3 subunit], probably mitochondrial
chr1	7233589	7235618	7234339	7235564	-	PRPL18	Cre01.g052100.t1.2		7235518,7235240,7235007,7234814,7234521,7233589	7235618,7235325,7235072,7234903,7234628,7234381	imported to chloroplast; Chloroplast large ribosomal subunit protein L18
chr1	7236155	7244350	7237152	7244233	-	FAP87	Cre01.g052150.t1.1		7244212,7243597,7242892,7242449,7241977,7241667,7241230,7240676,7240336,7239937,7239197,7238931,7238715,7238436,7238119,7237980,7237717,7237467,7236155	7244350,7243980,7243395,7242601,7242203,7241785,7241494,7240925,7240434,7240149,7239502,7239002,7238768,7238576,7238181,7238021,7237818,7237565,7237233	Flagellar protein with ankyrin repeats; found in the flagellar proteome [PMID: 15998802]
chr1	7244398	7247168	7245073	7247078	-	Cre01.g052200.t1.2	Cre01.g052200.t1.2		7246874,7246530,7246262,7245854,7245265,7244398	7247168,7246680,7246317,7245958,7245464,7245119	
chr1	7247281	7249117	7247428	7248407	+	TRXx	Cre01.g052250.t1.2		7247281,7247706,7247979,7248281	7247575,7247798,7248050,7249117	Chloroplastic localization confirmed experimentally in Arabidopsis. TRXx could be involved in oxidative stress responses as it is the most efficient chloroplastic TRX for reduction of 2-cys Peroxiredoxins, chloroplastic TRX dependent peroxidases [PMID: 12707279; PMID: 10580150].
chr1	7249341	7254427	7249588	7252733	+	E2F1	Cre01.g052300.t1.1		7249341,7249709,7249948,7250419,7250670,7251077,7251431,7251779,7252386	7249594,7249756,7250137,7250552,7250837,7251130,7251609,7252194,7254427	E2F family transcription factor.  Putative function in G1/S and S/M.  Positive regulator that controls commitment and S/M size checkpoints. Mutations at this locus suppress the small-cell phenotype of mutants in the MAT3 gene encoding a retinoblastoma-like transcription factor
chr1	7255111	7256678	7255327	7255917	+	MRPL20	Cre01.g052350.t1.1		7255111,7255761	7255519,7256678	
chr1	7256891	7258862	7256997	7257577	+	CPLD43	Cre01.g052400.t1.2		7256891	7258862	involved in heme c covalent linkage to cytochrome b6; belongs to YggT family; onserved among organisms performing oxygenic photosynthesis. The protein is localized to the chloroplast. PMID: 17535914
chr1	7258865	7266710	7259599	7266681	-	Cre01.g052450.t1.1	Cre01.g052450.t1.1		7266546,7266381,7266184,7265980,7265317,7264875,7262841,7261616,7261297,7261090,7260761,7260306,7259871,7258865	7266710,7266470,7266284,7266081,7265674,7265092,7264665,7262547,7261384,7261141,7260837,7260464,7260035,7259677	
chr1	7267855	7275060	7268655	7274954	-	Cre01.g052500.t1.1	Cre01.g052500.t1.1		7274828,7274632,7274265,7273715,7272980,7272534,7271862,7271191,7270570,7270098,7269396,7268927,7267855	7275060,7274706,7274371,7273816,7273467,7272781,7272251,7271615,7270706,7270174,7269902,7269199,7268676	
chr1	7275981	7282546	7276435	7281506	+	Cre01.g052550.t1.1	Cre01.g052550.t1.1		7275981,7277109,7278307,7278778,7279398	7277008,7278161,7278558,7279039,7282546	
chr1	7282641	7292962	7283403	7292620	+	Cre01.g052601.t1.1	Cre01.g052601.t1.1		7282641,7283296,7283909,7284181,7284631,7285150,7285648,7286134,7286609,7287521,7292101,7292400	7282892,7283594,7283975,7284285,7284795,7285281,7285749,7286220,7286867,7287811,7292206,7292962	May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	7292965	7310550	7293458	7310355	-	VIP2	Cre01.g052650.t1.1		7309980,7309283,7308678,7308305,7307920,7307548,7307035,7306681,7306339,7305372,7304973,7304378,7304019,7302853,7302317,7298557,7298266,7297658,7297246,7295924,7295342,7294640,7294336,7292965	7310550,7309720,7308767,7308397,7308021,7307637,7307155,7306790,7306439,7305467,7305044,7304738,7304114,7303830,7302478,7299449,7298326,7298068,7297420,7296955,7295739,7295072,7294418,7294142	
chr1	7311841	7342424	7311933	7341732	+	Cre01.g052750.t1.1	Cre01.g052750.t1.1		7311841,7312061,7312179,7312797,7313206,7313528,7313973,7314226,7314620,7315478,7315867,7316104,7316444,7316773,7317546,7317943,7318233,7318534,7318741,7319501,7321083,7321416,7321758,7322325,7322748,7323137,7323412,7323659,7324149,7324413,7324704,7325039,7325328,7325634,7326014,7326847,7327178,7327511,7327904,7328327,7328830,7329149,7329435,7329916,7330389,7330805,7331171,7331688,7331924,7332380,7332899,7333177,7333524,7333812,7334364,7334829,7335068,7335421,7336233,7336614,7336835,7337235,7337513,7338288,7338600,7338887,7339270,7339636,7340200,7341123	7311990,7312103,7312264,7312928,7313319,7313715,7314030,7314340,7315112,7315610,7315915,7316219,7316575,7316913,7317660,7318064,7318305,7318567,7319383,7320824,7321172,7321532,7322050,7322424,7322880,7323215,7323465,7323957,7324239,7324489,7324821,7325107,7325435,7325783,7326643,7326969,7327262,7327688,7328140,7328432,7328922,7329220,7329614,7330121,7330443,7330990,7331282,7331790,7332081,7332513,7332979,7333275,7333618,7333875,7334596,7334892,7335193,7335951,7336344,7336666,7336953,7337293,7337597,7338422,7338690,7339009,7339392,7339868,7340953,7342424	Transient receptor potential (TRP) ion channel
chr1	7342585	7351700	7344440	7351480	-	Cre01.g052800.t1.1	Cre01.g052800.t1.1		7351474,7350962,7350792,7349615,7349235,7348865,7348405,7348228,7347986,7347534,7347047,7345816,7342585	7351700,7350995,7350816,7349660,7349360,7348993,7348561,7348265,7348043,7347783,7347274,7346946,7345704	
chr1	7342585	7350200	7344440	7349929	-	Cre01.g052800.t2.1	Cre01.g052800.t2.1		7349912,7349615,7349235,7348865,7348405,7348228,7347986,7347534,7347047,7345816,7342585	7350200,7349660,7349360,7348993,7348561,7348265,7348043,7347783,7347274,7346946,7345704	
chr1	7356808	7367075	7357189	7364762	+	Cre01.g052850.t1.1	Cre01.g052850.t1.1		7356808,7357549,7357925,7358336,7358756,7359045,7359449,7360321	7357192,7357674,7358053,7358492,7358793,7359102,7359695,7367075	
chr1	7367328	7373639	7367772	7372539	+	PSO2	Cre01.g052950.t1.1		7367328,7368108,7368369,7368879,7369278,7369929,7370126,7370448	7367910,7368226,7368633,7369097,7369777,7369986,7370236,7373639	
chr1	7373686	7379583	7373800	7378670	+	GPD2	Cre01.g053000.t1.2		7373686,7374243,7374480,7374790,7375500,7375705,7376034,7376305,7376510,7376865,7377199,7377528,7377791,7378240,7378475	7374086,7374325,7374602,7374969,7375550,7375865,7376151,7376355,7376695,7377002,7377318,7377635,7378069,7378332,7379583	closely related to nearby GPD3
chr1	7379638	7381749	7379949	7381418	+	Cre01.g053050.t1.2	Cre01.g053050.t1.2		7379638,7380212,7381418	7380019,7380642,7381749	
chr1	7381798	7386950	7383156	7384845	+	Cre01.g053100.t1.1	Cre01.g053100.t1.1		7381798,7382206,7382618,7383034,7383970,7384434	7382014,7382485,7382711,7383329,7384219,7386950	
chr1	7388167	7394161	7388424	7393220	+	GPD3	Cre01.g053150.t1.2		7388167,7388723,7388995,7389309,7389754,7389979,7390172,7390496,7390757,7390952,7391308,7391675,7391983,7392241,7392685,7393025	7388563,7388805,7389117,7389488,7389777,7390029,7390332,7390613,7390807,7391137,7391445,7391794,7392090,7392519,7392777,7394161	Closely related to nearby GPD2
chr1	7388167	7394161	7388424	7393220	+	GPD3	Cre01.g053150.t2.1		7388167,7388723,7388995,7389309,7389979,7390172,7390496,7390757,7390952,7391308,7391675,7391983,7392241,7392685,7393025	7388563,7388805,7389117,7389488,7390029,7390332,7390613,7390807,7391137,7391445,7391794,7392090,7392519,7392777,7394161	Closely related to nearby GPD2
chr1	7394255	7401077	7394869	7400624	-	Cre01.g053200.t1.1	Cre01.g053200.t1.1		7400404,7399212,7398681,7398282,7397802,7396857,7396531,7396231,7395880,7395601,7394255	7401077,7400295,7398806,7398327,7398125,7397553,7396703,7396328,7395976,7395656,7395368	
chr1	7401241	7418187	7402147	7418094	-	Cre01.g053250.t1.1	Cre01.g053250.t1.1		7417839,7417692,7417067,7416848,7416090,7415613,7415237,7414999,7414756,7414453,7414085,7413613,7413282,7412906,7412525,7411899,7411451,7410931,7409976,7409509,7408955,7408490,7408057,7407646,7407302,7407046,7406756,7406461,7405966,7405658,7405298,7404944,7404601,7404166,7403853,7403435,7403113,7402764,7402469,7401241	7418187,7417720,7417172,7416935,7416283,7415714,7415357,7415024,7414856,7414487,7414256,7413741,7413435,7413079,7412614,7412291,7411684,7411245,7410819,7409810,7409307,7408789,7408351,7407768,7407432,7407118,7406835,7406571,7406099,7405736,7405397,7405006,7404700,7404293,7403981,7403497,7403158,7402853,7402563,7402240	
chr1	7418242	7422877	7418579	7422736	-	Cre01.g053288.t1.2	Cre01.g053288.t1.2		7422708,7422165,7421739,7421197,7420754,7420030,7419786,7419231,7418242	7422877,7422377,7421845,7421406,7420870,7420201,7419839,7419336,7418934	
chr1	7418242	7422877	7418579	7422736	-	Cre01.g053288.t2.1	Cre01.g053288.t2.1		7422708,7422201,7421739,7421197,7420754,7420030,7419786,7419231,7418242	7422877,7422377,7421845,7421406,7420870,7420201,7419839,7419336,7418934	
chr1	7423018	7427549	7423208	7426840	+	AIH1	Cre01.g053300.t1.1		7423018,7423193,7424017,7424431,7424994,7425539,7426086,7426663	7423033,7423814,7424115,7424568,7425136,7425869,7426448,7427549	converts agmatin to N-carbamoyl-putrescine; involved in agmatine pathway of polyamine (putrescine) biosynthesis; could be organelle-targeted
chr1	7427722	7430827	7428977	7430774	-	Cre01.g053350.t1.1	Cre01.g053350.t1.1		7430756,7427722	7430827,7430702	
chr1	7430912	7437377	7430929	7437346	-	Cre01.g053360.t1.2	Cre01.g053360.t1.2		7437238,7437015,7436779,7436360,7435952,7435498,7435044,7434586,7434017,7433588,7433169,7432264,7431874,7430912	7437377,7437081,7436858,7436525,7436084,7435684,7435232,7434721,7434157,7433764,7433337,7432868,7431985,7431551	
chr1	7441258	7454647	7442429	7454221	-	CYA1	Cre01.g053450.t1.1		7454436,7453989,7453753,7453640,7453252,7452684,7452282,7451742,7450798,7447555,7447229,7446504,7445548,7444966,7444585,7444162,7443848,7443486,7442823,7441258	7454647,7454307,7453905,7453688,7453304,7453159,7452525,7452083,7451487,7450670,7447335,7447082,7446355,7445268,7444747,7444411,7443994,7443685,7443248,7442656	contains a Class III nucleotidyl cyclase domain and a P-loop NTPase domain
chr1	7454815	7457897	7454934	7457117	+	Cre01.g053500.t1.1	Cre01.g053500.t1.1		7454815,7455198,7455632,7455944,7456246,7456590,7456820	7455036,7455465,7455698,7456068,7456342,7456650,7457897	
chr1	7457902	7463777	7458251	7463537	-	Cre01.g053550.t1.1	Cre01.g053550.t1.1		7463374,7463091,7462338,7461677,7461450,7461002,7460703,7460351,7460029,7459044,7458559,7457902	7463777,7463299,7462895,7462186,7461581,7461326,7460908,7460573,7460189,7459914,7458886,7458363	
chr1	7463873	7465649	7464180	7464685	+	MRPL27	Cre01.g053600.t1.2		7463873	7465649	
chr1	7470228	7480549	7471017	7479886	+	Cre01.g053700.t1.1	Cre01.g053700.t1.1		7470228,7471481,7471710,7472045,7472359,7472624,7472806,7473052,7473343,7473695,7474252,7478074,7478371,7479046	7471334,7471553,7471789,7472242,7472434,7472669,7472868,7473167,7473508,7474083,7477950,7478188,7478879,7480549	
chr1	7480643	7483527	7481598	7483457	-	LPL3	Cre01.g053750.t1.2		7483290,7482959,7482701,7482354,7482013,7480643	7483527,7483085,7482818,7482505,7482132,7481691	
chr1	7483628	7486114	7483767	7485559	+	Cre01.g053800.t1.1	Cre01.g053800.t1.1		7483628,7484026	7483929,7486114	
chr1	7486953	7491997	7488280	7491809	-	Cre01.g053850.t1.2	Cre01.g053850.t1.2		7491734,7490081,7489601,7486953	7491997,7491271,7489936,7489366	
chr1	7492168	7497679	7492379	7497138	+	Cre01.g053900.t1.1	Cre01.g053900.t1.1		7492168,7492556,7492879,7493221,7493622,7493944,7494214,7494588,7494931,7495297,7495596,7495943,7496280,7496877	7492412,7492684,7493064,7493392,7493702,7494016,7494351,7494732,7495048,7495470,7495684,7496048,7496677,7497679	
chr1	7497778	7503749	7498125	7502480	+	Cre01.g053950.t1.1	Cre01.g053950.t1.1		7497778,7498617,7498932,7499520,7499906,7500423	7498305,7498723,7499209,7499698,7500296,7503749	
chr1	7503809	7507987	7504392	7507745	-	Cre01.g054000.t1.2	Cre01.g054000.t1.2		7507568,7507299,7506900,7506235,7505773,7505074,7504679,7503809	7507987,7507379,7507126,7506652,7506012,7505538,7504912,7504467	
chr1	7508088	7510723	7508156	7509316	+	Cre01.g054050.t1.2	Cre01.g054050.t1.2		7508088,7508556,7508792,7509217	7508411,7508618,7508905,7510723	
chr1	7510902	7517437	7511561	7517343	-	Cre01.g054100.t1.1	Cre01.g054100.t1.1		7517321,7517110,7516870,7516593,7516354,7516172,7515708,7515220,7514813,7514459,7514248,7513931,7513364,7512960,7512668,7512381,7511976,7510902	7517437,7517180,7516932,7516690,7516408,7516201,7515952,7515383,7514913,7514493,7514282,7514131,7513701,7513091,7512749,7512439,7512106,7511745	
chr1	7517530	7524552	7517680	7522806	+	NTRC1	Cre01.g054150.t1.2		7517530,7518165,7518554,7518739,7519599,7520175,7520829,7521448,7521978,7522650	7517864,7518304,7518569,7518791,7519901,7520334,7520908,7521552,7522391,7524552	NADPH-dependent thioredoxin reductase C type (NTR/thioredoxin fusion); NTRC is a two domain protein containing an NADPH dependent thioredoxin reductase (N-terminal part) and a thioredoxin (C-terminal part). The protein was shown to be localized in chloroplasts in rice and appears to protect from abiotic stress in Arabidopsis [PMID: 15292215].
chr1	7525878	7527389	7526128	7526492	+	Cre01.g054200.t1.2	Cre01.g054200.t1.2		7525878	7527389	
chr1	7527783	7534487	7528760	7534408	-	CYP743A1	Cre01.g054250.t1.2		7534261,7533998,7533624,7533372,7533011,7532293,7531812,7531484,7530820,7530536,7530113,7529736,7529402,7529133,7527783	7534487,7534088,7533727,7533428,7533105,7532631,7532003,7531580,7531185,7530620,7530161,7529859,7529518,7529234,7528916	Hypothetical cytochrome P450. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan.
chr1	7535792	7542651	7535913	7541497	+	Cre01.g054300.t1.1	Cre01.g054300.t1.1		7535792,7536062,7540292,7540771,7541118,7541434	7535973,7540147,7540564,7540861,7541212,7542651	
chr1	7542892	7543803	7543316	7543755	+	Cre01.g054350.t1.1	Cre01.g054350.t1.1		7542892	7543803	
chr1	7544533	7547042	7544735	7546592	+	Cre01.g054400.t1.1	Cre01.g054400.t1.1		7544533,7544945,7545283,7545784,7546283,7546550	7544766,7545060,7545445,7545928,7546361,7547042	
chr1	7547066	7554271	7548497	7554043	-	Cre01.g054433.t1.1	Cre01.g054433.t1.1		7552167,7550624,7549072,7547066	7554271,7551969,7549228,7548547	
chr1	7549796	7554271	7550295	7554043	-	Cre01.g054433.t2.1	Cre01.g054433.t2.1		7552167,7550624,7549796	7554271,7551969,7550319	
chr1	7555078	7562841	7557317	7562596	-	Cre01.g054500.t1.2	Cre01.g054500.t1.2		7562525,7562117,7561783,7561320,7560494,7560108,7559198,7558867,7557597,7555078	7562841,7562259,7561913,7561444,7561186,7560306,7559915,7559018,7558559,7557407	
chr1	7563446	7568361	7564140	7568272	-	Cre01.g054550.t1.2	Cre01.g054550.t1.2		7567258,7566993,7566422,7565656,7565408,7565130,7564671,7563446	7568361,7567112,7566819,7566230,7565483,7565257,7564969,7564383	null-allele mutant was isolated (PMID 29743196)
chr1	7568502	7572953	7568856	7572830	+	Cre01.g054600.t1.1	Cre01.g054600.t1.1		7568502,7568931,7570298,7570887,7571638,7571858,7572146,7572587	7568862,7569836,7570695,7571461,7571713,7571985,7572450,7572953	
chr1	7572956	7576721	7573579	7576430	-	Cre01.g054650.t1.1	Cre01.g054650.t1.1		7576405,7575457,7574087,7572956	7576721,7576199,7575223,7573690	
chr1	7576962	7580363	7577106	7580036	+	Cre01.g054700.t1.2	Cre01.g054700.t1.2		7576962,7577678,7577970,7578248,7578645,7579107,7579817	7577394,7577767,7578020,7578343,7578788,7579232,7580363	
chr1	7580442	7583593	7580566	7583065	+	Cre01.g054750.t1.2	Cre01.g054750.t1.2		7580442,7581018,7581472,7581882,7582450	7580770,7581299,7581699,7582211,7583593	
chr1	7585526	7599331	7586457	7599102	-	Cre01.g054800.t1.2	Cre01.g054800.t1.2		7598984,7598798,7598445,7598029,7597609,7596819,7596320,7595969,7595392,7594931,7594453,7594107,7593740,7593337,7592952,7592483,7591703,7591078,7590669,7590189,7589593,7589134,7588708,7588125,7587546,7587069,7585526	7599331,7598853,7598529,7598142,7597797,7596952,7596579,7596050,7595460,7594974,7594607,7594264,7593856,7593432,7593124,7592672,7591783,7591303,7590732,7590354,7589752,7589357,7588815,7588308,7587826,7587247,7586563	May contain additional coding sequence in intronic N-island PMID: 27175017
chr1	7600264	7602491	7601122	7602430	-	Cre01.g054850.t1.2	Cre01.g054850.t1.2		7601870,7600264	7602491,7601249	
chr1	7602622	7610725	7602955	7609400	+	Cre01.g054900.t1.2	Cre01.g054900.t1.2		7602622,7603263,7603621,7605222,7605572,7606681,7607439,7608104	7603008,7603449,7604853,7605278,7606405,7606919,7607838,7610725	null-allele passenger mutation was isolated (PMID 29743196)
chr1	7611032	7617093	7611436	7615716	+	Cre01.g054950.t1.2	Cre01.g054950.t1.2		7611032,7611378,7611928,7612238,7612549,7612990,7614233,7614832,7615652	7611262,7611491,7611993,7612276,7612633,7613045,7614309,7615328,7617093	
chr1	7617202	7620859	7617500	7619173	+	Cre01.g055000.t1.1	Cre01.g055000.t1.1		7617202,7617798,7618298,7618794	7617547,7617986,7618402,7620859	
chr1	7620866	7623451	7621048	7623327	-	Cre01.g055050.t1.2	Cre01.g055050.t1.2		7623228,7622399,7622145,7621721,7620866	7623451,7622519,7622182,7621797,7621565	
chr1	7623740	7626289	7623928	7625291	+	Cre01.g055100.t1.1	Cre01.g055100.t1.1		7623740,7624309,7624679	7624049,7624478,7626289	
chr1	7626316	7629431	7626835	7629366	-	Cre01.g055151.t1.1	Cre01.g055151.t1.1		7629346,7628808,7628360,7627960,7627464,7626316	7629431,7629271,7628454,7628088,7627562,7626955	
chr1	7629497	7632111	7630640	7631826	-	CPL7	Cre01.g055200.t1.2		7631775,7631637,7631328,7629497	7632111,7631713,7631409,7630982	Similar to GIF3, GRF-interacting factor of A. thaliana. ts-lethal mutations block in S/M (PMID 25336509)
chr1	7633244	7636311	7633877	7635905	-	Cre01.g055250.t1.2	Cre01.g055250.t1.2		7635698,7634778,7633244	7636311,7635389,7634174	
chr1	7636412	7638073	7636778	7637194	+	Cre01.g055300.t1.1	Cre01.g055300.t1.1		7636412,7636752,7637074	7636621,7636946,7638073	
chr1	7638122	7641933	7638234	7641332	+	Cre01.g055316.t1.1	Cre01.g055316.t1.1		7638122,7638351,7638737,7639016,7639768,7640082,7641332	7638240,7638441,7638884,7639157,7639908,7641048,7641933	
chr1	7638122	7641193	7638234	7640283	+	Cre01.g055316.t2.1	Cre01.g055316.t2.1		7638122,7638351,7638737,7639016,7639768,7640082	7638240,7638441,7638884,7639157,7639908,7641193	
chr1	7641992	7651533	7642137	7650374	+	Cre01.g055350.t1.2	Cre01.g055350.t1.2		7641992,7642789,7643415,7643786,7644602,7645281,7646489,7647982	7642524,7643102,7643511,7644154,7644912,7646277,7647804,7651533	
chr1	7651956	7656431	7652752	7656317	-	Cre01.g055400.t1.2	Cre01.g055400.t1.2		7656269,7655586,7655363,7654676,7653587,7653286,7651956	7656431,7655798,7655407,7655197,7653631,7653389,7652858	
chr1	7656592	7657913	7656733	7657615	+	Cre01.g055404.t1.1	Cre01.g055404.t1.1		7656592,7657049	7656893,7657913	
chr1	7657922	7667101	7658940	7666967	-	Cre01.g055408.t1.1	Cre01.g055408.t1.1		7666915,7666772,7666569,7665574,7665188,7664678,7664171,7663395,7663027,7662456,7662153,7661724,7661272,7660680,7660270,7659719,7659325,7657922	7667101,7666824,7666658,7665657,7665294,7664789,7664353,7663496,7663204,7662570,7662213,7661901,7661329,7660833,7660393,7659925,7659416,7659090	
chr1	7667214	7669721	7667361	7669533	-	Cre01.g055412.t1.1	Cre01.g055412.t1.1		7669398,7668914,7668423,7668111,7667787,7667214	7669721,7669273,7668487,7668209,7667898,7667538	
chr1	7669822	7672258	7670356	7671710	+	Cre01.g055416.t1.1	Cre01.g055416.t1.1		7669822,7670243,7670617,7671538	7670095,7670362,7670753,7672258	
chr1	7672442	7676373	7672716	7675473	+	Cre01.g055420.t1.1	Cre01.g055420.t1.1		7672442,7672918,7673106,7673394,7673600,7674101,7674462,7674863,7675299	7672795,7673021,7673324,7673537,7673812,7674244,7674632,7675051,7676373	
chr1	7676522	7679623	7676571	7678769	+	PIGP	Cre01.g055424.t1.1		7676522,7676734,7677011,7677406,7677634,7678405,7678769	7676632,7676806,7677079,7677455,7678175,7678557,7679623	
chr1	7679930	7683441	7681096	7682988	-	Cre01.g055428.t1.1	Cre01.g055428.t1.1		7683164,7682924,7682372,7679930	7683441,7683047,7682526,7682095	
chr1	7683572	7693253	7683818	7691634	+	Cre01.g055432.t1.1	Cre01.g055432.t1.1		7683572,7686006,7686164,7686770,7687199,7687526,7688235,7688724,7689088,7689873,7691587	7685669,7686049,7686233,7686887,7687302,7687756,7688367,7688830,7689553,7691273,7693253	
chr1	7694086	7696231	7694428	7695983	-	Cre01.g055436.t1.1	Cre01.g055436.t1.1		7695901,7695648,7695146,7694086	7696231,7695740,7695468,7694827	
chr1	7696382	7700573	7697446	7700257	+	CSR8	Cre01.g055440.t1.1		7696382,7697417,7697811,7698329,7698611,7699132,7699468,7699804	7697034,7697491,7698035,7698430,7698827,7699199,7699608,7700573	
chr1	7700647	7703091	7701515	7702740	-	Cre01.g055444.t1.1	Cre01.g055444.t1.1		7702328,7700647	7703091,7701964	
chr1	7703166	7705141	7703654	7704143	-	Cre01.g055448.t1.1	Cre01.g055448.t1.1		7704719,7704022,7703166	7705141,7704381,7703779	
chr1	7705290	7711082	7705380	7710171	+	ALS2	Cre01.g055453.t1.1		7705290,7705492,7705667,7706060,7706758,7707196,7707461,7708064,7708359,7708721,7709070,7709413,7709700,7710070	7705411,7705607,7705699,7706186,7706843,7707271,7707606,7708239,7708429,7708848,7709174,7709541,7709853,7711082	Acetolactate synthase, small subunit (EC 2.2.1.6); (acetohydroxy acid synthase, small subunit); precursor; expected plastidic by homology, although predicted as mitochondrial by Target-P.  Previously annotated as ALSS1
chr1	7711086	7714001	7711427	7713902	-	Cre01.g055457.t1.1	Cre01.g055457.t1.1		7713668,7713152,7712758,7712262,7711086	7714001,7713418,7712976,7712594,7712039	
chr1	7711086	7714001	7711427	7713902	-	Cre01.g055457.t2.1	Cre01.g055457.t2.1		7713668,7713152,7712758,7712262,7711086	7714001,7713415,7712976,7712594,7712039	
chr1	7714177	7717001	7714709	7716973	-	Cre01.g055461.t1.1	Cre01.g055461.t1.1		7716970,7716869,7716402,7716029,7715589,7715030,7714177	7717001,7716905,7716463,7716054,7715688,7715269,7714748	
chr1	7719445	7724150	7721039	7723937	-	Cre01.g055465.t1.1	Cre01.g055465.t1.1		7723712,7723057,7722724,7722270,7721791,7721491,7719445	7724150,7723227,7722769,7722345,7721874,7721560,7721264	
chr1	7724251	7729832	7725207	7727461	+	Cre01.g055469.t1.1	Cre01.g055469.t1.1		7724251,7724810,7725762,7726091,7726384,7726883,7727363	7724484,7725522,7725824,7726208,7726502,7727090,7729832	
chr1	7730001	7739042	7730182	7737614	+	Cre01.g055473.t1.1	Cre01.g055473.t1.1		7730001,7730985,7731699,7732072,7732707,7734165,7736155	7730695,7731343,7731795,7732389,7733993,7735939,7739042	
chr1	7739115	7742696	7741351	7742670	-	Cre01.g055477.t1.1	Cre01.g055477.t1.1		7742649,7742295,7741887,7741495,7739115	7742696,7742497,7741975,7741521,7741416	
chr1	7764436	7770910	7764890	7770294	-	Cre01.g055500.t1.1	Cre01.g055500.t1.1		7770445,7770181,7769971,7769666,7767004,7766084,7765285,7764436	7770910,7770338,7770024,7769819,7769529,7766702,7765880,7765058	
chr1	7783858	7787774	7784859	7787580	-	COX11	Cre01.g055550.t1.2		7787319,7787001,7786697,7786302,7785843,7785439,7783858	7787774,7787069,7786732,7786357,7785986,7785655,7785021	protein involved in assembly of copper in mitochondrial cytochrome c oxidase, similar to yeast COX11
chr1	7787881	7804142	7788075	7803529	+	KIL15	Cre01.g055600.t1.1		7787881,7788198,7788854,7789313,7789642,7790803,7791249,7794513,7794806,7795467,7795858,7796238,7796659,7796972,7800219,7800589,7801218,7801578	7788105,7788254,7789019,7789506,7790333,7790882,7791575,7794549,7794953,7795589,7795959,7796386,7796734,7799800,7800310,7801038,7801307,7804142	Putative kinesin motor-like protein, closest match to kinesin-15 family.  Sequence gap in gene sequence and gaps nearby preclude a clear assignment; null-allele mutant was isolated (PMID 29743196)
chr1	7804241	7814032	7804336	7813671	+	Cre01.g055966.t1.1	Cre01.g055966.t1.1		7804241,7804614,7807031,7808372,7808698,7808969,7809576,7810127,7810480,7811342,7811760	7804480,7806651,7808115,7808463,7808727,7809025,7809719,7810171,7810923,7811531,7814032	
chr1	7814037	7816550	7814706	7816317	-	Cre01.g056331.t1.1	Cre01.g056331.t1.1		7816200,7815959,7815594,7815235,7814037	7816550,7816078,7815716,7815305,7814866	
chr1	7816685	7823070	7817069	7822674	-	Cre01.g056696.t1.1	Cre01.g056696.t1.1		7821545,7820878,7820408,7819915,7819592,7819032,7818416,7817631,7816685	7823070,7821266,7820496,7819944,7819648,7819436,7818860,7818186,7817464	
chr1	7816685	7823070	7817069	7822674	-	Cre01.g056696.t2.1	Cre01.g056696.t2.1		7821545,7820878,7820408,7819915,7819592,7819032,7818416,7817631,7817304,7816685	7823070,7821266,7820496,7819944,7819648,7819436,7818860,7818186,7817464,7817228	
chr1	7823221	7828602	7823324	7828028	+	Cre01.g057061.t1.1	Cre01.g057061.t1.1		7823221,7823962,7824475,7824933,7825936,7826434	7823555,7824173,7824572,7825616,7826116,7828602	
chr1	7829361	7831492	7829896	7831474	+	Cre01.g057426.t1.1	Cre01.g057426.t1.1		7829361,7831187	7829930,7831492	
chr1	7831659	7836400	7833051	7836154	-	Cre01.g057791.t1.1	Cre01.g057791.t1.1		7834429,7831659	7836400,7834155	
chr1	7838261	7839852	7838572	7839150	+	Cre01.g058156.t1.1	Cre01.g058156.t1.1		7838261,7838571,7838919	7838445,7838581,7839852	
chr1	7840560	7847420	7842132	7847305	-	ALG11	Cre01.g058521.t1.1		7847209,7847013,7846452,7845996,7845605,7845229,7844830,7844397,7843900,7843463,7842513,7840560	7847420,7847074,7846494,7846088,7845727,7845391,7844990,7844483,7844112,7843604,7842829,7842261	GT59 family
chr1	7847521	7852952	7847762	7852517	+	Cre01.g058886.t1.1	Cre01.g058886.t1.1		7847521,7847841,7848500,7849212,7849689,7850098,7850515,7850969,7851374,7852181	7847779,7847886,7848577,7849275,7849879,7850172,7850667,7851043,7851541,7852952	
chr1	7853011	7857412	7853171	7855638	+	Cre01.g059252.t1.1	Cre01.g059252.t1.1		7853011,7853308,7853557,7853770,7854303,7854706,7855336	7853208,7853464,7853584,7854096,7854410,7855183,7857412	
chr1	7857471	7862202	7857800	7860404	+	Cre01.g059617.t1.1	Cre01.g059617.t1.1		7857471,7858014,7858485,7858939,7859352,7860102	7857921,7858041,7858728,7859046,7859823,7862202	
chr1	7862281	7867072	7862438	7865032	+	Cre01.g059982.t1.1	Cre01.g059982.t1.1		7862281,7862574,7862823,7863037,7863532,7863946,7864730	7862475,7862730,7862850,7863324,7863639,7864447,7867072	
chr1	7867151	7871532	7867557	7869879	+	Cre01.g060347.t1.1	Cre01.g060347.t1.1		7867151,7867494,7867829,7868048,7868540,7868875,7869577	7867345,7867736,7867856,7868335,7868647,7869298,7871532	
chr1	7871581	7873902	7871609	7873557	+	Cre01.g060712.t1.1	Cre01.g060712.t1.1		7871581,7872948,7873329	7872616,7873074,7873902	
chr1	7874571	7878454	7874804	7877145	+	CGL93	Cre01.g061077.t1.1		7874571,7874994,7875196,7875539,7876316,7876780,7877050	7874911,7875056,7875313,7875706,7876480,7876885,7878454	null-allele mutant was isolated (PMID 29743196)
chr1	7879079	7881180	7879839	7880907	-	Cre01.g061442.t1.1	Cre01.g061442.t1.1		7880798,7880489,7879079	7881180,7880597,7879924	
chr1	7881273	7884412	7881418	7883466	+	Cre01.g061807.t1.1	Cre01.g061807.t1.1		7881273,7881614,7882023,7882231,7882968,7883337	7881507,7881702,7882114,7882557,7883012,7884412	
chr1	7884521	7885332	7884630	7885228	+	HBV1	Cre01.g062172.t1.1		7884521,7884994	7884762,7885332	
chr1	7885355	7887040	7885885	7886929	-	Cre01.g062537.t1.1	Cre01.g062537.t1.1		7886878,7886738,7886252,7885355	7887040,7886774,7886508,7886047	
chr1	7888039	7890983	7888273	7890724	-	Cre01.g062902.t1.1	Cre01.g062902.t1.1		7890526,7890232,7889659,7889184,7888039	7890983,7890301,7889746,7889262,7888591	
chr1	7891077	7896508	7891149	7895861	+	BLP1	Cre01.g063267.t1.1		7891077,7891365,7891704,7892087,7892494,7893498,7893849,7894159,7894508,7895006,7895606	7891236,7891421,7891883,7892236,7892636,7893618,7893909,7894355,7894723,7895161,7896508	
chr1	7896511	7900936	7897497	7900719	-	Cre01.g063632.t1.1	Cre01.g063632.t1.1		7899787,7899255,7898733,7898440,7896511	7900936,7899385,7898824,7898543,7898233	
chr1	7901087	7907704	7901179	7906321	+	Cre01.g063997.t1.1	Cre01.g063997.t1.1		7901087,7901516,7902017,7902645,7903146,7903567,7904073,7904340	7901383,7901802,7902314,7902927,7903344,7903693,7904155,7907704	
chr1	7901087	7907704	7901179	7906321	+	Cre01.g063997.t2.1	Cre01.g063997.t2.1		7901087,7901516,7902017,7902645,7903146,7903567,7904073,7904340	7901383,7901802,7902314,7902858,7903344,7903693,7904155,7907704	
chr1	7908147	7920725	7908576	7918276	+	Cre01.g064362.t1.1	Cre01.g064362.t1.1		7908147,7908858,7909071,7909510,7909997,7911007,7912702,7914393,7914670,7915115,7915441,7915588,7915902,7916100,7916602,7917046,7917252,7917455,7917779,7918185	7908768,7908970,7909374,7909851,7910787,7912435,7914212,7914442,7914935,7915158,7915459,7915702,7915930,7916356,7916690,7917096,7917270,7917500,7917888,7920725	null-allele mutant was isolated (PMID 29743196)
chr1	7921527	7932387	7922194	7930824	+	Cre01.g064727.t1.1	Cre01.g064727.t1.1		7921527,7922417,7922745,7923258,7924293,7925455,7927494,7927760,7928209,7928487,7928834,7929098,7929608,7929928,7930155,7930418,7930587	7922247,7922609,7923086,7924162,7925280,7927319,7927543,7927989,7928252,7928617,7928862,7929354,7929696,7929978,7930173,7930463,7932387	
chr1	7932907	7933718	7933011	7933375	+	Cre01.g065092.t1.1	Cre01.g065092.t1.1		7932907	7933718	
chr1	7933787	7936928	7933932	7936344	+	Cre01.g065457.t1.1	Cre01.g065457.t1.1		7933787,7935888,7936143	7935772,7936021,7936928	
chr1	7937777	7945698	7938005	7944431	+	IFT122	Cre01.g065822.t1.1		7937777,7938136,7938284,7938454,7938697,7939415,7939940,7940259,7940645,7940984,7942113,7942418,7942844,7943249,7943527,7944215	7938038,7938187,7938375,7938543,7938837,7939576,7940097,7940499,7940848,7941967,7942298,7942693,7943098,7943367,7944037,7945698	
chr1	7945877	7949992	7946006	7949519	+	ZRT4	Cre01.g066187.t1.1		7945877,7946338,7946883,7947371,7947737,7948622,7948874,7949069,7949350	7946058,7946437,7946956,7947615,7948405,7948691,7948926,7949109,7949992	Related to bacterial zupT homologs; appears as CrZIP9 in PMID: 15710683; PMID: 16766055
chr1	7950137	7953206	7951378	7952660	-	Cre01.g066552.t1.1	Cre01.g066552.t1.1		7952608,7952152,7951908,7951648,7950137	7953206,7952380,7951999,7951757,7951417	
chr1	7954526	7956348	7954736	7956324	-	LHCBM1	Cre01.g066917.t1.1		7956208,7955888,7955303,7954985,7954526	7956348,7955970,7955634,7955154,7954806	
chr1	7957465	7961476	7959912	7961384	-	Cre01.g067282.t1.1	Cre01.g067282.t1.1		7960879,7957465	7961476,7959923	
chr1	7960687	7962712	7960715	7962033	+	Cre01.g067647.t1.1	Cre01.g067647.t1.1		7960687,7961617	7961094,7962712	
chr1	7964897	7970623	7965186	7970376	+	PPR5	Cre01.g068012.t1.1		7964897,7965489,7965944,7966340,7966820,7967021,7967469,7967738,7968017,7968430,7968834,7969628	7965258,7965651,7966092,7966537,7966873,7967230,7967537,7967869,7968154,7968519,7969396,7970623	Found in the flagellar proteome
chr1	7970697	7975933	7970772	7975596	+	Cre01.g068377.t1.1	Cre01.g068377.t1.1		7970697,7971097,7971338,7972048,7972403,7973743,7974037,7974315,7974656,7975317	7970886,7971219,7971728,7972206,7972566,7973909,7974223,7974380,7975048,7975933	
chr1	7975997	7981480	7976044	7979127	+	Cre01.g068742.t1.1	Cre01.g068742.t1.1		7975997,7976267,7976467,7976624,7976848,7977472,7977744	7976184,7976403,7976555,7976740,7977299,7977559,7981480	
chr1	7987241	7988416	7987902	7988274	-	COX191	Cre01.g069107.t1.1		7988211,7987241	7988416,7988037	Putative protein required for assembly of cytochrome c oxidase; similar to PET191 of Saccharomyces cerevisiae; PMID: 15710684.  Previously annotated as PET191
chr1	7988517	7994478	7988712	7993832	+	Cre01.g069472.t1.1	Cre01.g069472.t1.1		7988517,7988891,7989311,7990507,7990711,7991290,7991644,7992106,7992375,7992687,7993388,7993706	7988800,7989022,7989438,7990560,7990907,7991474,7991902,7992202,7992444,7993180,7993465,7994478	
chr1	7994482	8001216	7995047	8000914	-	Cre01.g069837.t1.1	Cre01.g069837.t1.1		8000693,8000432,8000097,7999741,7999296,7997566,7996936,7994482	8001216,8000536,8000265,7999956,7999555,7999110,7997444,7996768	
chr1	8001317	8003688	8001473	8002816	+	Cre01.g070202.t1.1	Cre01.g070202.t1.1		8001317,8001744,8002102,8002335,8002629	8001510,8001897,8002184,8002446,8003688	null-allele passenger mutation was isolated (PMID 29743196)
chr1	8003705	8007306	8004112	8007154	-	Cre01.g070567.t1.1	Cre01.g070567.t1.1		8006789,8006580,8006221,8005820,8005475,8005113,8004835,8004454,8003705	8007306,8006666,8006380,8006032,8005639,8005222,8004979,8004522,8004262	
chr1	8007900	8017985	8009708	8017955	-	Cre01.g070932.t1.1	Cre01.g070932.t1.1		8017882,8017713,8017124,8016991,8016734,8016542,8014947,8013808,8013384,8012445,8011506,8011245,8010483,8007900	8017985,8017813,8017246,8017037,8016872,8016628,8016455,8014785,8013687,8013240,8012235,8011351,8011020,8010308	
chr1	8018040	8019365	8018634	8019094	-	Cre01.g071297.t1.1	Cre01.g071297.t1.1		8018040	8019365	
chr1	8019966	8025667	8020244	8024697	+	ACS1	Cre01.g071662.t1.1		8019966,8020644,8020871,8021144,8021606,8021873,8022050,8022338,8022571,8022677,8022914,8023095,8023286,8023545,8023737,8024019,8024350,8024547	8020339,8020776,8020888,8021278,8021755,8021926,8022218,8022469,8022591,8022771,8023022,8023152,8023439,8023668,8023781,8024180,8024441,8025667	Acetyl-CoA synthetase (EC 6.2.1.1); Acetate-CoA ligase; Not in mitochondrion or plastid based on Target-P prediction (predicted as other with high reliability); similar to rice ACS (GenBank XP_466041)
chr1	8028756	8032424	8029005	8032424	+	Cre01.g072027.t1.1	Cre01.g072027.t1.1		8028756,8031079	8030881,8032424	
chr10	3314	5025	4612	4997	-	Cre10.g417426.t1.1	Cre10.g417426.t1.1		4724,3314	5025,4639	
chr10	8650	11645	9291	11262	-	Cre10.g417450.t1.1	Cre10.g417450.t1.1		11259,9987,8650	11645,10364,9870	
chr10	13640	17398	14359	17288	-	CYN20-5	Cre10.g417500.t1.2		17225,17092,16658,16369,15811,15583,15338,15135,14956,14751,14538,13640	17398,17147,16803,16505,15974,15616,15400,15198,14996,14804,14615,14431	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; contains an unusual N-terminal domain with signature of nuclear movement protein NudC (pfam3593)/alpha-crystallin/HSP2 (p23 co-chaperone of HSP90, cd237)
chr10	17526	20329	17585	19821	+	CLPT3	Cre10.g417550.t1.1		17526,18400,18654,19102,19253,19451,19719	17948,18499,18866,19130,19324,19483,20329	Homologue of plant ClpT (formerly called ClpS) proteins associated with ClpP complex (PMID: 14593120); has similarity to the N-terminal domain of ClpA chaperone that binds the ClpS adaptator
chr10	21410	22175	21863	22083	-	Cre10.g417576.t1.1	Cre10.g417576.t1.1		21410	22175	
chr10	22247	27905	23329	27639	-	Cre10.g417600.t1.1	Cre10.g417600.t1.1		27548,26950,26124,25818,25671,24957,24728,24531,24008,23755,22247	27905,27048,26783,25969,25687,25291,24879,24547,24391,23857,23461	
chr10	28013	32092	28185	31082	+	Cre10.g417650.t1.1	Cre10.g417650.t1.1		28013,28553,29118,29312,29539,29989,30285,30450,30634,30957	28238,28687,29175,29400,29659,30019,30349,30472,30743,32092	
chr10	33446	34066	33484	33752	+	Cre10.g417675.t1.1	Cre10.g417675.t1.1		33446	34066	
chr10	34615	37744	35098	37732	-	RPL3	Cre10.g417700.t1.2		37710,37315,36919,36366,35910,35582,34615	37744,37446,37114,36561,36206,35716,35281	Cytosolic 60S large ribosomal subunit protein L3
chr10	37886	39976	39045	39496	+	Cre10.g417730.t1.2	Cre10.g417730.t1.2		37886,38819,38998	38599,38903,39976	
chr10	37886	39976	39045	39496	+	Cre10.g417730.t2.1	Cre10.g417730.t2.1		37886,38819,38998	38599,38907,39976	
chr10	40360	41015	40640	40902	-	Cre10.g417741.t1.1	Cre10.g417741.t1.1		40360	41015	
chr10	41126	45377	41339	43995	+	Cre10.g417750.t1.1	Cre10.g417750.t1.1		41126,41703,41989,42199,42511,42981,43227,43672	41481,41791,42075,42323,42653,43081,43332,45377	
chr10	50016	58677	50425	57274	+	Cre10.g417850.t1.1	Cre10.g417850.t1.1		50016,50410,50807,53670,55091,56625	50341,50639,53529,54975,56405,58677	
chr10	59725	61295	60120	61162	-	Cre10.g417900.t1.2	Cre10.g417900.t1.2		61086,60389,59725	61295,60987,60246	
chr10	61370	69195	62665	69145	-	Cre10.g417950.t1.2	Cre10.g417950.t1.2		68870,68321,68023,67642,67134,66625,65328,64989,64504,64015,63556,63093,61370	69195,68454,68122,67726,67363,66871,65491,65178,64680,64227,63681,63353,62848	
chr10	69332	71597	69754	70973	+	Cre10.g418000.t1.2	Cre10.g418000.t1.2		69332,70159,70868	69943,70284,71597	
chr10	71646	77630	72069	77432	+	Cre10.g418050.t1.2	Cre10.g418050.t1.2		71646,72016,72334,72860,73443,73988,74778,75396,76559,76861,77249	71698,72249,72564,73210,73817,74538,75078,76325,76735,76977,77630	
chr10	77648	80876	78345	80722	-	POA3	Cre10.g418100.t1.1		80560,80394,79888,79528,79133,78715,77648	80876,80481,80003,79586,79256,78840,78432	(PSA4) 20S proteasome alpha subunit C (type 4)
chr10	81326	84079	81636	83376	+	FAP178	Cre10.g418150.t1.2		81326,81947,82482,83153	81833,81998,82678,84079	Flagellar Associated Protein, found in the flagellar proteome; Similar to Testis and Spermatogenesis Cell Related Protein 2
chr10	81436	84079	81636	83376	+	FAP178	Cre10.g418150.t2.1		81436,81947,82482,83153	81833,81998,82678,84079	Flagellar Associated Protein, found in the flagellar proteome; Similar to Testis and Spermatogenesis Cell Related Protein 2
chr10	84126	85667	84127	85175	+	Cre10.g418200.t1.2	Cre10.g418200.t1.2		84126,84457,84827	84329,84569,85667	
chr10	85670	95045	86247	94803	-	BLD10	Cre10.g418250.t1.2		94602,94130,93943,93778,93461,93250,92997,92759,92349,92079,91428,90970,90674,90391,90181,89511,89255,89023,88773,88431,88109,87769,87494,87226,86928,86645,85670	95045,94391,93996,93850,93668,93371,93141,92863,92599,92253,91991,91299,90838,90546,90266,90024,89371,89088,88855,88557,88282,87996,87631,87327,87083,86749,86463	Basal body protein localized to the cartwheel structure at the proximal end. bld10 mutants have no basal bodies or flagella.
chr10	95107	99335	96543	99027	-	Cre10.g418300.t1.2	Cre10.g418300.t1.2		98987,98548,98023,97691,97270,95107	99335,98727,98208,97788,97361,97069	
chr10	99386	101781	100063	101568	-	Cre10.g418350.t1.1	Cre10.g418350.t1.1		101401,101002,99386	101781,101087,100236	
chr10	101909	106337	102750	105631	+	Cre10.g418400.t1.1	Cre10.g418400.t1.1		101909,102629,104102,104951,105523	102264,103944,104716,105364,106337	
chr10	101909	106717	102750	105631	+	Cre10.g418400.t2.1	Cre10.g418400.t2.1		101909,102629,104102,104951,105523	102264,103944,104716,105364,106717	
chr10	106740	108465	107306	107735	-	Cre10.g418450.t1.2	Cre10.g418450.t1.2		107633,106740	108465,107453	
chr10	109277	118705	111627	118382	-	Cre10.g418500.t1.1	Cre10.g418500.t1.1		118143,117883,117700,117476,117100,116732,116200,115587,115117,114755,114308,113936,113555,112585,109277	118705,117988,117765,117534,117283,116965,116587,116056,115233,114817,114565,114150,113753,112872,112185	
chr10	109277	118705	111627	118382	-	Cre10.g418500.t2.1	Cre10.g418500.t2.1		118143,117883,117700,117476,117100,116732,116200,115587,115117,114755,114308,113936,113555,112585,109277	118705,117988,117765,117534,117283,116965,116587,116047,115233,114817,114565,114150,113753,112872,112185	
chr10	118812	121275	120471	120724	-	Cre10.g418550.t1.2	Cre10.g418550.t1.2		120950,118812	121275,120831	
chr10	121416	130531	122015	128139	+	RLS3	Cre10.g418600.t1.1		121416,125689,126058,126346,126648,127905	125551,125889,126109,126408,127676,130531	Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342).
chr10	130760	132215	130923	131206	-	Cre10.g418626.t1.1	Cre10.g418626.t1.1		131466,130760	132215,131237	
chr10	132949	135663	134703	135543	-	Cre10.g418650.t1.1	Cre10.g418650.t1.1		135259,135032,132949	135663,135140,134829	
chr10	136065	138955	137150	138874	-	DMA4	Cre10.g418700.t1.2		138845,138698,138518,138210,137753,136065	138955,138724,138557,138275,137969,137365	Putative DNA methylase, N-6 adenine-specific
chr10	139066	145497	139252	144995	+	Cre10.g418750.t1.1	Cre10.g418750.t1.1		139066,139634,140784,142949	139372,140575,142733,145497	
chr10	146200	158665	147544	158469	-	Cre10.g418800.t1.1	Cre10.g418800.t1.1		158444,158179,156102,154888,154148,150765,149088,146200	158665,158370,158038,155943,154771,154033,150645,148996	ts-lethal mutant was isolated (PMID 29743196)
chr10	158712	161435	159468	161395	-	Cre10.g418851.t1.1	Cre10.g418851.t1.1		161056,160683,160293,159980,158712	161435,160801,160499,160061,159681	
chr10	161899	172025	163315	171645	-	Cre10.g418900.t1.2	Cre10.g418900.t1.2		171463,169956,169687,169513,169236,168993,168594,168343,168085,167755,167405,167135,166845,166052,161899	172025,171222,169746,169526,169317,169115,168804,168464,168144,167852,167540,167251,166972,166385,165871	
chr10	172860	180095	173955	179957	-	KIN10-2	Cre10.g418950.t1.1		179894,179691,179481,179296,179128,178801,178594,178341,178018,177745,177468,177260,176887,176540,176256,175920,175614,175278,174985,174770,174483,174293,172860	180095,179777,179621,179392,179210,178965,178700,178431,178133,177892,177604,177341,177099,176744,176401,176148,175807,175412,175148,174882,174640,174346,174057	Kinesin family member, kinesin-4/10 family, homolog of Volvox carteri invA [GI:31879428, PMID: 12809605]. Needed in Volvox for involution
chr10	172860	180095	173955	179957	-	KIN10-2	Cre10.g418950.t2.1		179894,179691,179481,179296,179128,178801,178594,178341,178018,177745,177468,177260,176887,176540,176256,175920,175614,175278,174985,174770,174483,174293,172860	180095,179777,179621,179392,179210,178965,178700,178431,178133,177892,177604,177341,177099,176744,176401,176148,175807,175412,175148,174882,174637,174346,174057	Kinesin family member, kinesin-4/10 family, homolog of Volvox carteri invA [GI:31879428, PMID: 12809605]. Needed in Volvox for involution
chr10	180476	184717	181229	184282	+	Cre10.g418976.t1.1	Cre10.g418976.t1.1		180476,182294,183639,184282	181232,183010,184195,184717	
chr10	184806	188314	184903	186899	+	Cre10.g419000.t1.2	Cre10.g419000.t1.2		184806,185138,185344,185623,185946,186320	184999,185225,185439,185804,186104,188314	
chr10	189636	196223	190129	195926	-	ATP1B	Cre10.g419050.t1.1		195554,195117,194821,194544,194056,193575,192860,192549,192084,191684,191426,191099,190839,190476,189636	196223,195211,194878,194597,194340,193784,192980,192644,192357,191812,191465,191252,190936,190697,190333	alpha subunit of the mitochondrial ATP synthase [= human ATP5A1, yeast ATP1]; part of the F1 sector; isoform of ATP1A
chr10	189636	196223	190129	195926	-	ATP1B	Cre10.g419050.t2.1		195554,195117,194821,194544,194056,193575,192860,192549,192084,191684,191426,191111,190839,190476,189636	196223,195211,194878,194597,194340,193784,192980,192644,192357,191812,191465,191252,190936,190697,190333	alpha subunit of the mitochondrial ATP synthase [= human ATP5A1, yeast ATP1]; part of the F1 sector; isoform of ATP1A
chr10	196272	203723	197754	203001	-	Cre10.g419100.t1.1	Cre10.g419100.t1.1		202937,202766,202400,201971,201603,201303,200987,200829,200724,200435,200185,199998,199833,199544,199231,198960,198495,196272	203723,202855,202526,202148,201746,201431,201130,200861,200748,200486,200227,200093,199871,199632,199362,199153,198788,198326	
chr10	203944	209246	204162	208449	+	Cre10.g419150.t1.1	Cre10.g419150.t1.1		203944,204398,204857,205399,205844,206113,206431,206754,207060,207306,207629,207969,208233	204223,204708,205242,205556,205943,206270,206594,206870,207151,207462,207844,208058,209246	
chr10	209984	225095	210345	225075	+	Cre10.g419200.t1.1	Cre10.g419200.t1.1		209984,210762,211369,211692,212404,212637,213186,213274,213645,213952,215112,215423,216359,216743,217038,217391,217947,218225,218615,219195,220559,221026,221292,221588,223296,223583,223858,224073,224562,224785,225039	210585,211112,211538,212242,212515,212907,213202,213499,213828,214976,215234,216160,216607,216805,217184,217807,218054,218400,218736,220339,220618,221100,221341,223105,223404,223633,223914,224239,224675,224806,225095	
chr10	209984	224975	210345	224924	+	Cre10.g419200.t2.1	Cre10.g419200.t2.1		209984,210762,211369,211692,212404,212637,213186,213274,213645,213952,215112,215423,216359,216743,217038,217391,217947,218225,218615,219195,220559,221026,221292,221588,223296,223583,223858,224073,224182,224562,224785,224924	210585,211112,211538,212242,212515,212907,213202,213499,213828,214976,215234,216160,216607,216805,217184,217807,218054,218400,218736,220339,220618,221100,221341,223105,223404,223633,223914,224104,224239,224675,224806,224975	
chr10	225634	227297	225952	226817	+	Cre10.g419250.t1.2	Cre10.g419250.t1.2		225634,225712,226143,226398,226599	225666,226007,226208,226463,227297	
chr10	227414	229000	227454	228974	+	Cre10.g419300.t1.2	Cre10.g419300.t1.2		227414,228221,228939	227972,228513,229000	
chr10	229008	237053	230019	236415	-	Cre10.g419350.t1.1	Cre10.g419350.t1.1		236672,235734,235306,234851,234610,234431,233886,233567,233367,230785,230410,229008	237053,236558,235581,235104,234669,234485,234152,233715,233447,233185,230535,230214	
chr10	237108	245803	238366	244783	-	Cre10.g419400.t1.1	Cre10.g419400.t1.1		245032,244126,243697,243284,243059,242787,242432,242073,241785,238908,238691,237108	245803,244917,243972,243525,243112,242874,242611,242206,241865,241563,238789,238474	
chr10	246918	248723	247525	248458	-	Cre10.g419443.t1.2	Cre10.g419443.t1.2		248455,248284,246918	248723,248388,247636	
chr10	248824	256777	248982	254489	+	Cre10.g419450.t1.1	Cre10.g419450.t1.1		248824,249157,249607,249955,250183,252177,252342,252821,253179,253508	249087,249351,249782,250077,252009,252240,252689,253054,253382,256777	
chr10	258174	263285	258522	262051	+	Cre10.g419500.t1.2	Cre10.g419500.t1.2		258174,258726,258943,260981,261394,261672,261952	258525,258791,259044,261067,261512,261759,263285	
chr10	263342	266453	263925	266026	-	Cre10.g419550.t1.2	Cre10.g419550.t1.2		266289,265901,265416,265032,264552,264261,263342	266453,266162,265549,265267,264746,264338,264015	
chr10	263342	266453	263925	265263	-	Cre10.g419550.t2.1	Cre10.g419550.t2.1		266289,265416,265032,264552,264261,263342	266453,265549,265267,264746,264338,264015	
chr10	269258	272873	271408	272655	-	Cre10.g419600.t1.2	Cre10.g419600.t1.2		272457,272065,271744,269258	272873,272259,271812,271498	
chr10	272974	274746	273214	274202	+	Cre10.g419650.t1.2	Cre10.g419650.t1.2		272974,273780,274079	273466,273905,274746	
chr10	274794	278057	274876	277564	+	CGL6	Cre10.g419700.t1.1		274794,275332,275588,275910,276300,276753,277009,277321	275005,275412,275659,276063,276572,276844,277137,278057	
chr10	278444	281167	278608	280595	+	RPB3	Cre10.g419750.t1.2		278444,279605,280029,280307	279274,279706,280091,281167	ts-lethal mutant was isolated (PMID 29743196)
chr10	281228	284436	282218	284259	-	PIS1	Cre10.g419800.t1.2		284201,283954,283538,283131,282744,282444,281228	284436,284128,283682,283226,282843,282529,282302	condenses CDP-DAG with I-3-P
chr10	284564	291335	284690	290831	+	Cre10.g419850.t1.2	Cre10.g419850.t1.2		284564,285101,285500,285797,286118,286466,286625,287036,287921,288205,288808,289146,289358,290035,290324	284758,285395,285648,285923,286259,286515,286822,287797,288061,288630,288979,289204,289885,290145,291335	
chr10	291338	295853	292691	295421	-	Cre10.g419900.t1.1	Cre10.g419900.t1.1		295349,294821,294599,294319,294088,293844,293190,292946,291338	295853,295048,294700,294371,294201,293913,293337,292983,292712	
chr10	293308	295853	293337	295421	-	Cre10.g419900.t2.1	Cre10.g419900.t2.1		295349,294821,294599,294336,294088,293844,293469,293308	295853,295048,294700,294371,294262,293913,293723,293337	
chr10	296224	303805	296461	302547	+	Cre10.g419950.t1.1	Cre10.g419950.t1.1		296224,296772,297016,297341,297601,297924,298267,298493,298834,299280,299705,300073,300499,300829,301142,301694,301934,302369	296579,296836,297186,297448,297687,298058,298326,298569,298939,299384,299840,300152,300540,300906,301194,301742,302016,303805	
chr10	303808	305953	303844	305442	-	Cre10.g420000.t1.1	Cre10.g420000.t1.1		305639,305415,304744,304289,304002,303808	305953,305536,305237,304336,304155,303844	
chr10	307134	309162	307261	308574	+	Cre10.g420050.t1.1	Cre10.g420050.t1.1		307134,308246,308561	308134,308346,309162	
chr10	310358	314503	311308	314250	-	DNJ35	Cre10.g420100.t1.2		314183,314054,313784,313356,313044,312729,312411,312165,311951,311662,310358	314503,314085,313849,313499,313167,312832,312543,312237,312023,311738,311441	DnaJ-like protein, probably cytosolic since it contains no N-terminal extension and homologs in Arabidopsis (Q9SR91), tobacco (Q9SP9), and rice (Q688X8) are predicted by TargetP to be cytosolic; contains N-terminal J-domain (pfam226) and DnaJ C termina
chr10	314652	319243	314876	319001	-	Cre10.g420150.t1.1	Cre10.g420150.t1.1		318404,318080,317664,317245,316767,316375,315989,315792,314652	319243,318187,317866,317560,317066,316559,316214,315857,315545	
chr10	319809	324313	320575	323621	-	PHC55	Cre10.g420200.t1.2		323517,323110,322871,319809	324313,323384,322990,322644	
chr10	319809	324313	320575	323621	-	PHC55	Cre10.g420200.t2.1		324016,323517,323110,322871,319809	324313,323630,323384,322990,322644	
chr10	325374	326401	325435	326038	+	Cre10.g420226.t1.1	Cre10.g420226.t1.1		325374,325692,326022	325605,325850,326401	
chr10	326534	332035	326730	331886	+	Cre10.g420250.t1.1	Cre10.g420250.t1.1		326534,327283,329873,330505,331618,331836	326841,327438,329951,330686,331687,332035	
chr10	332041	332993	332286	332816	-	PSAE	Cre10.g420350.t1.2		332782,332620,332467,332041	332993,332711,332532,332388	Acceptor side subunit, involved in ferredoxin docking
chr10	333094	345547	333223	344623	+	Cre10.g420400.t1.1	Cre10.g420400.t1.1		333094,333542,333847,334415,334761,335203,335749,336218,336626,337278,337796,338200,338602,339053,339772,340106,340925,341594,342295,342655,343402,343779,344139,344578	333242,333705,334152,334547,334877,335360,335921,336269,337045,337487,337904,338324,338766,339441,339955,340194,341174,341815,342419,342775,343509,343877,344249,345547	
chr10	345614	360468	346506	359230	+	Cre10.g420450.t1.2	Cre10.g420450.t1.2		345614,346480,347043,347572,347999,348389,348715,349237,349670,350078,350303,350834,351107,351311,351609,351821,352123,352396,352803,353146,353424,353904,354306,354796,355235,355588,355998,356262,356721,357229,357508,357806,358243,358535,358786,359185	345919,346585,347342,347726,348153,348468,348920,349345,349791,350176,350612,350903,351146,351397,351659,351918,352198,352492,352909,353227,353611,353952,354371,354917,355333,355624,356005,356449,356819,357315,357574,357910,358349,358568,358845,360468	
chr10	360562	373123	363472	373072	-	Cre10.g420500.t1.1	Cre10.g420500.t1.1		372697,372233,371996,371707,371197,370722,370277,369994,369450,369100,368651,368188,367798,367257,366891,366439,366131,365363,364941,364377,360562	373123,372376,372085,371739,371427,371026,370397,370043,369702,369204,368748,368343,367918,367355,366947,366583,366223,365847,365135,364598,364126	
chr10	373198	381233	373816	381173	-	Cre10.g420512.t1.1	Cre10.g420512.t1.1		381113,380835,378686,377973,377665,377378,376509,376232,375657,375408,375148,374748,374416,373198	381233,380924,380637,378039,377703,377461,377155,376355,375964,375433,375225,374820,374430,374168	
chr10	373198	381233	373816	381173	-	Cre10.g420512.t2.1	Cre10.g420512.t2.1		381113,380835,378686,377973,377665,377378,376509,376232,375657,375408,375148,374748,373198	381233,380924,380637,378039,377703,377461,377155,376355,375964,375433,375225,374820,374168	
chr10	381308	384933	381829	384482	-	Cre10.g420537.t1.2	Cre10.g420537.t1.2		382799,381308	384933,382594	
chr10	387023	393004	387474	392351	+	TSP4	Cre10.g420550.t1.1		387023,387707,387925,388521,388864,389337,389786,390329,390591,390865,391150,391460,391831,392226	387584,387788,388077,388583,388964,389460,389911,390417,390684,390939,391221,391612,391975,393004	C-terminal peptidase, Tail-specific peptidase, possibly the D1 processing peptidase; contains a PDZ domain
chr10	393073	396634	393437	395785	+	Cre10.g420551.t1.2	Cre10.g420551.t1.2		393073,393702,394709,395415,395782	393539,394511,395206,395543,396634	
chr10	396723	404175	396799	404100	+	Cre10.g420561.t1.2	Cre10.g420561.t1.2		396723,396955,397911,398228,398664,399065,399482,399745,400240,400527,400856,401165,401428,401653,401955,402249,402652,403049,403788,404028	396856,397626,398034,398457,398901,399228,399557,399924,400369,400625,400983,401263,401470,401807,402098,402432,402896,403503,403967,404175	
chr10	406263	416562	407006	415783	+	Cre10.g420600.t1.1	Cre10.g420600.t1.1		406263,407273,407603,408469,408886,409257,409448,409727,410164,410388,410722,411087,412122,412419,412814,413261,413639,413886,414283,414603,414892,415179,415415,415654	407036,407402,408165,408606,409026,409320,409491,409915,410247,410551,410836,411920,412212,412575,413006,413384,413753,414015,414395,414690,414972,415252,415514,416562	null-allele mutant was isolated (PMID 29743196)
chr10	417143	434000	417555	432166	+	Cre10.g420650.t1.2	Cre10.g420650.t1.2		417143,417979,418519,418934,419249,419542,420114,420567,420981,421759,422288,422861,423564,424107,424424,425445,426368,426825,428587,428994,429291,430462,430922,431359,431719	417658,418193,418624,419081,419338,419646,420204,420664,421274,421819,422362,423133,423800,424235,424507,426083,426509,428323,428685,429130,430249,430679,431028,431452,434000	
chr10	434067	435202	434700	435093	-	ATP15	Cre10.g420700.t1.2		434912,434067	435202,434747	F1F-ATP synthase epsilon chain, polypeptide of 8.3 kDa, mitochondrial precursor; [=yeast ATP15, human ATP5E]; part of the F1 sector
chr10	436080	437322	436130	437073	-	RPL30	Cre10.g420750.t1.2		437258,437049,436798,436534,436327,436080	437322,437101,436903,436635,436395,436162	Cytosolic 60S large ribosomal subunit protein L30
chr10	437423	452974	437691	452193	+	FAP46	Cre10.g420800.t1.1		437423,438156,438496,438766,439123,439740,440175,440598,440955,441311,441788,442049,442884,443309,443631,443994,444236,444534,445021,445457,445887,446624,446987,447273,447727,448215,448854,449215,449551,449830,450206,450519,450877,451130,451919	437862,438214,438598,438960,439593,439994,440411,440768,441140,441583,441909,442773,443164,443458,443840,444115,444336,444811,445260,445666,446480,446797,447103,447524,448023,448643,449069,449331,449665,450054,450375,450656,450978,451704,452974	Found in the flagellar proteome [PMID: 15998802]; together with FAP221,FAP54, FAP74, C1d-87 and calmodulin, form a single complex in the C1d projection  FAP46 20421426  C1d-HC2n Flagellar Associated Protein 46
chr10	452977	455662	453312	455449	-	Cre10.g420850.t1.1	Cre10.g420850.t1.1		455403,455189,454589,454286,452977	455662,455257,455011,454454,454141	
chr10	455773	464402	456202	464278	-	HEL44	Cre10.g420900.t1.2		464199,463770,463457,462797,462370,461536,461235,460838,460459,459986,459544,459148,458702,458249,457795,457383,456921,455773	464402,463879,463616,463239,462429,461754,461312,460971,460558,460075,459712,459275,458845,458416,457968,457490,457044,456504	
chr10	464523	470693	465356	469561	+	Cre10.g420950.t1.2	Cre10.g420950.t1.2		464523,465252,465878,468613	464854,465615,468441,470693	
chr10	470843	476144	470926	475634	+	Cre10.g421000.t1.1	Cre10.g421000.t1.1		470843,471188,471577,472241,472410,472942,473343,474058,474421,474918,475382	471064,471412,471966,472291,472724,473141,473865,474168,474561,475253,476144	
chr10	476603	484524	476886	483324	+	Cre10.g421021.t1.2	Cre10.g421021.t1.2		476603,477798,478032,478296	476975,477874,478075,484524	
chr10	484527	492122	484873	491960	-	Cre10.g421050.t1.1	Cre10.g421050.t1.1		491874,491357,491075,490670,490072,489722,489482,489009,488377,487262,486903,486585,486108,485765,484527	492122,491626,491193,490776,490483,489895,489557,489258,488817,488189,487143,486654,486398,485969,485583	null-allele passenger mutation was isolated (PMID 29743196)
chr10	492353	494386	492492	493319	+	Cre10.g421079.t1.2	Cre10.g421079.t1.2		492353,492624,492994,493241	492529,492756,493057,494386	
chr10	494443	500954	494651	499917	+	Cre10.g421100.t1.1	Cre10.g421100.t1.1		494443,495108,497664	494971,497514,500954	
chr10	501073	519985	501625	518770	+	Cre10.g421150.t1.1	Cre10.g421150.t1.1		501073,502108,502506,502908,503344,503698,504004,504336,505188,505657,505986,506361,506704,507011,507421,507790,508041,508236,508626,509158,509457,509886,510431,510717,511200,511590,511844,512140,512858,513166,513636,514097,514396,514777,515447,515851,516298,516816,517111,517568,517948,518222,518591	501743,502242,502656,503056,503367,503859,504129,504485,505498,505807,506129,506521,506788,507174,507617,507908,508133,508437,508978,509283,509676,510253,510536,510860,511373,511708,511903,512634,513004,513366,513965,514252,514584,515223,515593,516045,516621,516977,517302,517798,518100,518377,519985	null-allele mutant was isolated (PMID 29743196)
chr10	521233	522906	521369	522683	+	Cre10.g421200.t1.1	Cre10.g421200.t1.1		521233,521975,522299	521706,522057,522906	
chr10	522953	530574	523174	530313	+	EXO70	Cre10.g421250.t1.2		522953,523783,524113,524558,524878,525255,525551,525848,526234,526579,526941,527246,527642,528012,528438,529686,530039	523540,523927,524231,524737,524949,525326,525637,525955,526377,526731,527046,527505,527728,528110,528497,529765,530574	Hypothetical Conserved Protein. Similar to Exo70, a subunit of the Exocyst.
chr10	530577	536382	530890	535679	-	Cre10.g421300.t1.2	Cre10.g421300.t1.2		535593,535111,534762,534545,534122,533814,533516,533253,532997,532741,532329,532067,531798,531526,531219,530577	536382,535206,534819,534618,534209,533939,533551,533328,533043,532805,532387,532107,531845,531609,531307,530936	
chr10	536562	542782	537033	541957	+	MMP25	Cre10.g421350.t1.2		536562,537402,537967,538359,538889,539369,539993,540665,541073,541472	537133,537505,538038,538640,539142,539519,540265,540844,541289,542782	Matrix metalloproteinase belonging to the M11 peptidase family
chr10	542787	549502	543393	548912	-	Cre10.g421400.t1.2	Cre10.g421400.t1.2		549265,548351,547888,546426,545593,542787	549502,548964,548147,547692,546211,544994	
chr10	551173	556581	552950	556281	-	Cre10.g421450.t1.1	Cre10.g421450.t1.1		556240,556036,551173	556581,556087,555872	
chr10	557172	560763	557270	560071	+	Cre10.g421500.t1.1	Cre10.g421500.t1.1		557172,557963,559861	557738,559540,560763	
chr10	560776	570021	563021	569518	-	Cre10.g421550.t1.1	Cre10.g421550.t1.1		569917,569413,569079,566577,566445,564038,563336,560776	570021,569538,569122,568800,566513,566248,563839,563132	
chr10	560776	570021	563021	569518	-	Cre10.g421550.t2.1	Cre10.g421550.t2.1		569733,569413,569079,566577,566445,564038,563336,560776	570021,569538,569122,568800,566513,566248,563839,563132	
chr10	570076	572471	572132	572298	-	Cre10.g421576.t1.1	Cre10.g421576.t1.1		570076	572471	
chr10	572582	581433	572887	580604	+	TST2	Cre10.g421600.t1.2		572582,573185,573824,574191,574778,575834,576312,576720,577144,577560,577959,578288,578572,578928,579327,579699,580133,580553	572941,573235,573970,574271,575003,575934,576384,576841,577209,577684,578046,578362,578679,579043,579474,579820,580250,581433	
chr10	581436	585331	582167	585126	-	Cre10.g421650.t1.2	Cre10.g421650.t1.2		585069,584664,584322,584017,583559,582764,581436	585331,584769,584377,584123,583721,583020,582453	
chr10	585675	595188	586445	595074	-	GPD4	Cre10.g421700.t1.2		594755,594428,594127,593676,593312,592979,592715,592254,591859,591534,591238,590907,590599,590198,589787,589465,589199,588817,587774,587504,586789,585675	595188,594510,594249,593746,593420,593029,592766,592362,591976,591596,591276,590972,590679,590335,589824,589546,589306,588909,587833,587605,586881,586565	null-allele mutant was isolated (PMID 29743196)
chr10	595236	597114	596042	597084	-	CGL32	Cre10.g421750.t1.1		596919,596589,595236	597114,596841,596224	
chr10	595236	597221	596042	596770	-	CGL32	Cre10.g421750.t2.1		596919,596589,595236	597221,596841,596224	
chr10	597372	600852	597840	600291	+	Cre10.g421800.t2.1	Cre10.g421800.t2.1		597372,598369,598690,598935,599305,599759,599979,600279	598038,598422,598770,599018,599414,599858,600092,600852	
chr10	597222	600852	597840	600291	+	Cre10.g421800.t1.2	Cre10.g421800.t1.2		597222,598369,598690,598935,599305,599759,599979,600279	598038,598422,598770,599018,599414,599858,600092,600852	
chr10	601282	603833	601399	602341	+	Cre10.g421850.t1.2	Cre10.g421850.t1.2		601282,602194	601792,603833	
chr10	603836	623361	605036	622598	-	SRR27	Cre10.g421900.t1.1		622483,622229,622019,621378,620809,620453,620187,619782,619006,618613,618053,617688,617342,616759,616539,616348,616049,615830,615206,614861,614524,614340,613860,611870,611244,610847,610497,610210,609530,609127,608704,608551,607257,607075,606700,606495,606147,603836	623361,622326,622059,621927,621053,620548,620317,620006,619684,618859,618457,617832,617560,617199,616592,616434,616159,615886,615646,615025,614604,614377,614036,613741,611655,611100,610697,610306,610052,609307,608890,608608,608380,607106,606914,606546,606368,605969	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912); part of a group of 5 closely-related SRR proteins; null-allele passenger mutation was isolated (PMID 29743196)
chr10	624896	632672	626561	632440	-	TEF26	Cre10.g421950.t1.2		632418,631643,631279,630954,630627,630342,630012,629754,629375,629084,628755,628388,627948,627547,627212,626821,624896	632672,632281,631378,631103,630726,630440,630088,629840,629528,629214,628890,628495,628073,627621,627299,626939,626618	Protein with unknown function, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr10	624896	632901	626561	632440	-	TEF26	Cre10.g421950.t2.1		632418,631643,631279,630954,630627,630342,630012,629754,629375,629084,628755,628388,627948,627547,627212,626821,624896	632901,632281,631378,631103,630726,630440,630088,629840,629528,629214,628890,628495,628073,627621,627299,626939,626618	Protein with unknown function, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr10	633602	640123	633657	639673	+	Cre10.g422000.t1.2	Cre10.g422000.t1.2		633602,633872,634328,634762,635331,635877,636280,636654,637128,637558,637829,638284,638686,639049,639405	633677,634022,634420,634848,635483,636010,636384,636810,637284,637604,637918,638440,638747,639167,640123	5' terminal exon needs editing (lacks initiator methionin)
chr10	640172	645093	640205	644815	+	Cre10.g422050.t1.2	Cre10.g422050.t1.2		640172,640656,641241,641655,642300,643888	640361,641011,641448,642035,643646,645093	
chr10	645096	649521	645432	649206	-	Cre10.g422100.t1.2	Cre10.g422100.t1.2		649151,648879,647649,646433,646072,645096	649521,649039,648678,647469,646199,645799	
chr10	649822	656758	649863	656537	+	Cre10.g422150.t1.1	Cre10.g422150.t1.1		649822,650273,650756,651014,651474,651905,652230,652596,653638,654150,654458,654701,654970,655308,655664,656005	650106,650364,650797,651088,651543,651980,652342,652734,653747,654282,654542,654771,655073,655377,655742,656758	
chr10	656766	665741	657491	665488	-	CTP4	Cre10.g422201.t1.1		665142,664436,664108,663662,663194,662817,662384,661839,661439,660929,660460,660116,659361,658851,658191,656766	665741,664494,664226,663800,663390,662953,662490,662082,661624,661138,660647,660194,659866,659066,658356,657733	Putative copper-translocating P-type ATPase, heavy metal translocating P-type ATPase
chr10	665862	675747	666129	673102	+	Cre10.g422250.t1.1	Cre10.g422250.t1.1		665862,667707,668245	667374,668054,675747	
chr10	676380	678971	676745	678698	-	PRX6	Cre10.g422300.t1.2		678590,678302,678100,677878,677541,677129,676380	678971,678351,678163,677925,677696,677263,676775	chloroplastic thioredoxin dependent peroxidase, chloroplast precursor. Attached to thylakoids in Arabidopsis [PMID: 16507087; PMID: 15531707; PMID: 14976238; PMID: 12529539; PMID: 15890615]
chr10	680832	681903	681058	681601	+	Cre10.g422326.t1.1	Cre10.g422326.t1.1		680832,681440	681125,681903	
chr10	682112	690885	684090	690650	+	Cre10.g422350.t1.1	Cre10.g422350.t1.1		682112,682379,683861,684224,684448,684918,685384,685898,686359,686873,687334,687847,688308,688817,689261,689867,690075,690258,690607	682128,682485,684124,684361,684535,685160,685506,686140,686481,687115,687456,688089,688430,689059,689740,689968,690176,690518,690885	
chr10	692266	697051	693027	697010	-	Cre10.g422400.t1.1	Cre10.g422400.t1.1		696908,696588,696392,695910,695595,694521,694157,692266	697051,696677,696425,695920,695706,695380,694204,693855	
chr10	697106	698421	697329	698143	-	Cre10.g422419.t1.2	Cre10.g422419.t1.2		698070,697882,697487,697106	698421,697923,697631,697339	
chr10	700952	706603	701048	705958	+	GGT1	Cre10.g422450.t1.2		700952,701830,702527,703120,703623,704044,704264,704816,705077,705448,705821	701233,702026,702710,703213,703793,704106,704550,704900,705214,705568,706603	
chr10	706652	712423	706896	711944	+	Cre10.g422500.t1.1	Cre10.g422500.t1.1		706652,707165,707573,707759,708807,709460,709994,710624,711596	706920,707334,707627,708505,709214,709645,710433,711323,712423	
chr10	712431	715671	712981	715549	-	Cre10.g422550.t1.2	Cre10.g422550.t1.2		713704,712431	715671,713434	
chr10	715808	721499	716410	721384	-	NUO6	Cre10.g422600.t1.1		721307,720884,720392,719933,719607,718975,718578,718247,717939,717584,717191,716773,715808	721499,721031,720541,720096,719667,719089,718672,718412,718015,717676,717310,716877,716494	Mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 51 kD subunit, mitochondrial. =NDUFV1. Chain F. gi 34328784 gb AAQ63696.1  [PMID: 15710684; PMID: 15450959]
chr10	721962	725903	722223	725770	+	Cre10.g422650.t1.1	Cre10.g422650.t1.1		721962,722457,722922,723468,723962,724209,724487,724738,725239	722388,722685,723268,723770,723984,724311,724537,725109,725903	
chr10	725960	729503	726124	728967	+	Cre10.g422700.t1.2	Cre10.g422700.t1.2		725960,726284,726557,726884,727403,728518,728885	726204,726404,726652,727113,727562,728642,729503	
chr10	730987	734240	731995	732806	-	Cre10.g422718.t1.2	Cre10.g422718.t1.2		733869,732601,732300,730987	734240,732883,732344,732087	
chr10	738437	746320	739477	746026	-	MOT10	Cre10.g422750.t1.1		745887,745525,745035,744681,744413,744105,743789,743545,743224,742774,742472,741966,741670,741276,740799,740376,739965,738437	746320,745622,745132,744780,744457,744159,743879,743572,743351,742909,742558,741995,741770,741387,740954,740510,740121,739704	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr10	746574	752550	748103	751794	-	Cre10.g422800.t1.1	Cre10.g422800.t1.1		752013,749373,746574	752550,751904,749231	Contains HRDC (Helicase and RNase D C-terminal) and DnaJ domains
chr10	753061	758772	753189	757553	+	Cre10.g422850.t1.1	Cre10.g422850.t1.1		753061,753495,753877,754241,754503,754740,754971,755507,755767,756128,756402,756870,757472	753225,753580,754014,754300,754578,754822,755166,755590,755865,756187,756539,756962,758772	
chr10	758115	759940	758580	758937	-	Cre10.g422876.t1.1	Cre10.g422876.t1.1		759213,758870,758115	759940,759037,758684	
chr10	760081	771235	760529	768331	+	Cre10.g422900.t1.1	Cre10.g422900.t1.1		760081,760489,761064,762168,762701,763335,764082,764379,764708,765768,766192,766643,766810,767066,767545,767840,768196	760301,760901,761950,762603,763168,763925,764184,764506,765586,765875,766389,766684,766896,767162,767651,767947,771235	
chr10	771775	773210	772331	772845	-	Cre10.g423000.t1.2	Cre10.g423000.t1.2		773037,771775	773210,772942	
chr10	774211	779222	774515	777475	+	Cre10.g423050.t1.2	Cre10.g423050.t1.2		774211,777259	776960,779222	
chr10	779271	782246	780094	781584	+	Cre10.g423083.t2.1	Cre10.g423083.t2.1		779271,780090,781545	779569,781231,782246	
chr10	779097	782246	780094	781282	+	Cre10.g423083.t1.1	Cre10.g423083.t1.1		779097,780090,781232	779795,781148,782246	
chr10	784981	787522	785289	787488	+	Cre10.g423150.t1.1	Cre10.g423150.t1.1		784981,785557,787441	785414,787364,787522	
chr10	788611	795636	788979	794902	+	Cre10.g423200.t1.1	Cre10.g423200.t1.1		788611,789247,791945,792379,792630,792938,793381,793736,794000,794241,794569,794821	789104,791149,792211,792477,792784,793061,793608,793822,794096,794347,794676,795636	
chr10	798235	802160	798970	802029	-	MDY2	Cre10.g423250.t1.2		801963,801379,801113,800653,800307,800063,799605,799278,798235	802160,801493,801226,800826,800464,800152,799761,799396,799039	Malate dehydrogenase ( MDH) (= malic dehydrogenase) [EC:1.1.1.37]; NAD-dependent; putative glyoxysomal localization; PMID: 1921471
chr10	802302	811359	802459	810783	+	Cre10.g423300.t1.1	Cre10.g423300.t1.1		802302,802662,803024,803391,803939,804324,804707,805170,806219,806688,807118,807406,807832,808171,808606,808922,809852,810067,810558	802523,802812,803155,803719,804060,804385,804832,805329,806348,806887,807221,807521,807950,808265,808689,809045,809896,810126,811359	
chr10	811365	814648	812197	814391	-	Cre10.g423350.t1.2	Cre10.g423350.t1.2		814302,813923,813178,812773,811365	814648,814150,813271,812951,812393	
chr10	814751	819512	814779	819097	+	Cre10.g423400.t1.1	Cre10.g423400.t1.1		814751,815267,815529,815599,815937,816160,816463,817559,817951,818253,818682	815097,815357,815534,815714,815982,816266,816572,817595,818103,818398,819512	
chr10	814751	819512	814779	819097	+	Cre10.g423400.t2.1	Cre10.g423400.t2.1		814751,815267,815599,815937,816160,816463,817559,817951,818253,818682	815097,815357,815714,815982,816266,816572,817595,818103,818398,819512	
chr10	824818	826960	825195	826869	-	COA4	Cre10.g423450.t1.2		826832,826624,826333,826095,824818	826960,826763,826459,826156,825915	Similar to Arabidopsis halotolerance protein Hal3a, PMID: 1652125; PMID: 11279129. Probably catalyzes the second and third steps (out of five) of CoA synthesis from pantothenate
chr10	827143	830140	828028	830105	-	HMOX1	Cre10.g423500.t1.2		829939,829777,829607,829228,828799,828530,827143	830140,829871,829700,829341,828917,828580,828181	Heme oxygenase; HMOX; HO; Catalyzes the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide; Involved in the synthesis of phytochromobilin, the pigment cofactor of phytochrome, in plants [PMID: 16115609]
chr10	830261	835431	831022	834824	+	Cre10.g423550.t1.1	Cre10.g423550.t1.1		830261,831004,831325,831683,832069,832421,832913,833308,833638,833909,834154,834503	830554,831112,831393,831763,832156,832494,833005,833390,833760,833995,834283,835431	Alanine racemase/threonine aldolase
chr10	835435	847080	835551	846644	-	Cre10.g423600.t1.1	Cre10.g423600.t1.1		846475,846052,845536,845222,844902,843417,842435,842073,841147,840906,840588,839904,839556,839114,838413,837896,837227,835435	847080,846290,845780,845336,844982,843805,843226,842178,841908,841010,840752,840354,839714,839292,838724,838188,837634,837091	
chr10	847507	849836	848506	849801	-	PRPL11	Cre10.g423650.t1.2		849683,849391,849218,849045,847507	849836,849470,849310,849108,848682	imported to chloroplast; Chloroplast large ribosomal subunit protein L11
chr10	849981	853392	850240	853058	+	Cre10.g423700.t1.1	Cre10.g423700.t1.1		849981,850454,850879,851090,851572,852093,852538,852855	850337,850667,850921,851353,851859,852307,852638,853392	
chr10	853521	857431	854045	856629	+	COQ3	Cre10.g423750.t1.2		853521,853787,854732,855084,855447,855786,856321	853674,854412,854888,855231,855484,855904,857431	Similar to yeast hexaprenyldihydroxybenzoate methyltransferase (GI:92090588), involved in Coenzyme Q biosynthesis
chr10	857515	867610	858122	867515	-	Cre10.g423800.t1.1	Cre10.g423800.t1.1		867497,867170,866344,866157,865947,865381,865002,864674,863973,863339,862112,861676,861190,860378,859918,859261,858917,858625,857515	867610,867262,866395,866233,866013,865742,865149,864833,864162,863659,862231,861790,861347,860842,860035,859537,859010,858722,858420	
chr10	867809	872865	867981	872016	+	SRR26	Cre10.g423850.t1.1		867809,868173,868324,868889,869159,869508,869765,870080,870856,871123	868081,868250,868548,868981,869198,869593,869878,870712,870930,872865	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) proteins; part of a group of 5 closely-related SRR proteins
chr10	867809	873042	867981	872016	+	SRR26	Cre10.g423850.t2.1		867809,868173,868324,868889,869159,869508,869765,870080,870856,871123	868081,868250,868548,868981,869198,869593,869878,870712,870930,873042	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) proteins; part of a group of 5 closely-related SRR proteins
chr10	874581	875610	874936	875519	+	Cre10.g423900.t1.2	Cre10.g423900.t1.2		874581	875610	
chr10	875856	878712	876039	877870	+	Cre10.g423950.t1.2	Cre10.g423950.t1.2		875856,876125,876279,876595,876916,877676	876057,876215,876415,876695,877004,878712	
chr10	878715	881870	878746	881769	-	Cre10.g424000.t1.1	Cre10.g424000.t1.1		881766,880107,878715	881870,881516,879910	
chr10	881983	888600	883141	888295	-	Cre10.g424050.t1.1	Cre10.g424050.t1.1		888260,888093,887780,883719,881983	888600,888196,887898,887628,883539	
chr10	889335	892908	889786	892864	-	Cre10.g424100.t1.2	Cre10.g424100.t1.2		892813,892616,892457,892067,891533,891146,889335	892908,892717,892502,892176,891673,891333,889991	identical to GI:14571671=CAC42762 (ppaI); probably chloroplastic (by homology)
chr10	893041	895094	893234	894284	+	TF2A4	Cre10.g424150.t1.2		893041,893755,894134	893360,893838,895094	
chr10	895241	901092	895564	900713	+	Cre10.g424200.t1.1	Cre10.g424200.t1.1		895241,895827,896236,896542,896896,897187,897694,898212,898679,899114,899702	895727,896014,896358,896624,896972,897350,897814,898414,898907,899385,901092	
chr10	901531	903901	902119	903732	-	FAP90	Cre10.g424250.t1.2		903637,903364,903059,902747,901531	903901,903496,903196,902848,902380	Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG13 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]
chr10	904051	910532	904224	909582	+	KIN16-1	Cre10.g424300.t1.2		904051,904416,904806,905281,906035,906478,906802,907293,908748	904269,904502,904913,905817,906216,906601,907035,908525,910532	kinesin-16 family, a new family separated from the standard polyphyletic kinesin-12 family (PMID: 16481395)
chr10	910581	915628	910670	915097	+	Cre10.g424350.t1.1	Cre10.g424350.t1.1		910581,910878,912319,912852,913376,913816,914228,914929	910752,912021,912584,913003,913497,913930,914407,915628	
chr10	916201	919059	916275	918589	+	PBB1	Cre10.g424400.t1.2		916201,916471,916711,916977,917479,918050,918509	916404,916612,916807,917046,917621,918201,919059	20S proteasome beta subunit B, type beta 2; (PSMB7) (PSMB10) (PUP1), trypsin-like activity
chr10	919065	921500	919940	920961	-	TOM40	Cre10.g424450.t1.2		919065	921500	
chr10	921836	925162	921994	924419	+	CPK4	Cre10.g424500.t1.2		921836,922353,922809,923127,923380,923887,924246	922112,922540,922896,923179,923541,924037,925162	PfkB-type carbohydrate kinase family protein, ribokinase
chr10	925649	930487	925721	927821	+	Cre10.g424550.t1.1	Cre10.g424550.t1.1		925649,926028,926518,926898,927215	925882,926160,926726,927045,930487	
chr10	931227	946037	931666	945878	-	Cre10.g424600.t1.1	Cre10.g424600.t1.1		945553,944553,943654,943251,942843,942529,942102,941721,941128,940645,939935,939375,938935,938565,937858,937156,936597,936280,935702,935311,934781,934380,933993,933568,933349,932706,931227	946037,945288,944246,943387,943053,942578,942245,941800,941287,940835,940232,939584,939138,938681,938084,937306,936663,936409,935806,935374,934930,934526,934152,933771,933408,932901,932309	
chr10	946138	948035	946271	947115	+	Cre10.g424650.t1.2	Cre10.g424650.t1.2		946138,946417,946796,947049	946336,946510,946837,948035	
chr10	949091	961417	951389	960819	-	Cre10.g424700.t1.1	Cre10.g424700.t1.1		960657,959581,958497,958073,957590,957138,956742,956218,955466,955020,954740,953689,953473,953044,952671,952193,951877,949091	961417,959715,958574,958203,957803,957366,956943,956432,955966,955129,954829,953794,953507,953251,952756,952264,951948,951614	
chr10	963632	972467	964553	972017	-	PPD1	Cre10.g424750.t1.2		971945,971414,970998,970548,970073,969610,969078,968576,968068,967703,967323,966967,966598,965903,965455,964936,963632	972467,971519,971125,970670,970290,969802,969206,968816,968309,967851,967470,967070,966760,966134,965569,965155,964652	Pyruvate phosphate dikinase (PPDK) (EC 2.7.9.1); Pyruvate orthophosphate dikinase (PODK); Target-P predicts no organelle targeting sequence; similar to PPDK from Phytophthora (GenBank AAK74150), probably cytosolic
chr10	972682	981422	973824	981291	-	CTP2	Cre10.g424775.t1.1		980879,980527,978965,978546,978301,978033,977611,977224,976707,976280,975148,974669,972682	981422,980738,979252,978693,978347,978113,977758,977339,976886,976474,975903,974956,974373	Heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein; related to AtPAA1 and AtPAA2, chloroplastic copper transporters in A. thaliana; PMID: 1571683; PMID: 15772282; PMID: 1551454
chr10	972682	979567	973824	979516	-	CTP2	Cre10.g424775.t2.1		979492,978965,978546,978301,978033,977611,977224,976707,976280,975148,974669,972682	979567,979252,978693,978347,978113,977758,977339,976886,976474,975903,974956,974373	Heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein; related to AtPAA1 and AtPAA2, chloroplastic copper transporters in A. thaliana; PMID: 1571683; PMID: 15772282; PMID: 1551454
chr10	979622	981422	980076	981291	-	CTP2	Cre10.g424775.t3.1		980879,980527,979622	981422,980738,980142	Heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein; related to AtPAA1 and AtPAA2, chloroplastic copper transporters in A. thaliana; PMID: 1571683; PMID: 15772282; PMID: 1551454
chr10	981533	988221	982224	988018	-	Cre10.g424850.t1.2	Cre10.g424850.t1.2		987910,987020,986610,986038,985613,985161,984526,984013,983677,983260,982840,982456,981533	988221,987106,986701,986149,985748,985243,984666,984201,983784,983388,983013,982547,982240	U4/U6 small nuclear ribonucleoprotein; similar to PRP31
chr10	988328	992109	988412	991600	+	PFH1	Cre10.g424900.t1.2		988328,988747,989283,990217,990858,991391	988520,989007,989398,990361,991029,992109	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Studied in detail by Keskiaho et al. (27) [PMID: 172223] as v2 C_3612, who named this Cr-P4H-1; next to PFH2
chr10	1000276	1013108	1000566	1011750	+	Cre10.g425000.t1.1	Cre10.g425000.t1.1		1000276,1001130,1001820,1002139,1002692,1003379,1004115,1004557,1004853,1005381,1005947,1006459,1007905,1008416,1008840,1009421,1009731,1010106	1000984,1001419,1001876,1002348,1002897,1003544,1004336,1004685,1005079,1005721,1006137,1007701,1008158,1008610,1009163,1009507,1009916,1013108	null-allele passenger mutation was isolated (PMID 29743196)
chr10	1013173	1023775	1015223	1023649	-	ROC59	Cre10.g425050.t1.1		1023580,1022824,1022461,1022103,1021648,1020973,1019389,1019123,1018718,1018308,1017063,1016643,1016235,1015812,1013173	1023775,1022979,1022619,1022252,1021824,1021182,1019654,1019271,1018857,1018469,1018087,1016869,1016380,1015984,1015437	WD4-repeat protein involved in circadian rhythms with possible histone acetyltransferase activity.  Matsuo et al.'s (28) roc28 and roc59 (rhythm of chloroplast) circadian rhythm mutant loci map here; mutant shows delayed phase angle (DPA) phenotype
chr10	1025916	1038285	1026066	1038135	+	Cre10.g425100.t1.2	Cre10.g425100.t1.2		1025916,1026360,1026832,1027215,1027726,1028235,1028587,1029059,1030999,1031416,1031888,1032436,1032971,1033395,1033732,1034162,1034774,1035240,1037353	1026195,1026570,1026934,1027426,1027939,1028356,1028749,1030713,1031136,1031558,1032190,1032627,1033039,1033475,1033844,1034291,1035048,1037044,1038285	
chr10	1038386	1040767	1038594	1040585	+	Cre10.g425150.t1.1	Cre10.g425150.t1.1		1038386,1040390	1040193,1040767	
chr10	1040916	1046197	1041167	1045844	+	Cre10.g425200.t1.1	Cre10.g425200.t1.1		1040916,1041406,1041809,1042441,1042797,1043022,1043386,1043921,1044754,1045675	1041217,1041463,1042156,1042557,1042889,1043145,1043580,1044543,1044866,1046197	
chr10	1046199	1070795	1047077	1070333	-	Cre10.g425251.t1.1	Cre10.g425251.t1.1		1070567,1070282,1069914,1069364,1067438,1060304,1054075,1053800,1048776,1046199	1070795,1070449,1070082,1069727,1069269,1067239,1060227,1053982,1053685,1048631	
chr10	1070847	1074855	1071301	1074768	-	Cre10.g425300.t1.1	Cre10.g425300.t1.1		1074522,1074282,1073908,1073246,1072986,1072614,1072217,1071761,1070847	1074855,1074336,1074069,1073392,1073024,1072693,1072312,1071909,1071530	
chr10	1074956	1085077	1075076	1083842	+	Cre10.g425350.t1.2	Cre10.g425350.t1.2		1074956,1076720,1077478,1077743,1083236	1076528,1077289,1077564,1082911,1085077	
chr10	1085080	1090125	1085722	1089859	-	Cre10.g425400.t1.2	Cre10.g425400.t1.2		1088971,1086519,1085080	1090125,1088681,1086220	
chr10	1090220	1094195	1090837	1094064	-	AOF5	Cre10.g425450.t1.2		1093980,1093616,1093287,1092824,1092297,1091891,1091378,1090220	1094195,1093642,1093365,1092979,1092594,1092108,1091619,1091128	Putative flavin-containing amine oxidase
chr10	1094346	1112847	1094565	1112187	+	Cre10.g425501.t1.1	Cre10.g425501.t1.1		1094346,1094946,1095294,1095763,1096708,1097060,1097853,1098598,1098929,1099567,1100387,1100889,1101221,1101707,1102329,1102824,1103325,1103743,1104291,1104635,1104885,1105401,1105793,1106098,1106625,1107136,1107655,1108290,1108581,1109019,1109616,1111407,1112010	1094679,1095008,1095442,1096084,1096827,1097607,1098384,1098681,1099396,1100130,1100604,1100964,1101361,1101824,1102441,1102989,1103473,1103895,1104359,1104643,1105067,1105539,1105860,1106228,1106827,1107299,1107806,1108423,1108714,1109254,1111125,1111682,1112847	
chr10	1112886	1117365	1113075	1117278	-	Cre10.g425550.t1.1	Cre10.g425550.t1.1		1117201,1116686,1116360,1115962,1114934,1114441,1113682,1113338,1112886	1117365,1117076,1116445,1116112,1115721,1114746,1114125,1113548,1113087	
chr10	1117460	1128985	1117708	1128456	-	Cre10.g425600.t1.1	Cre10.g425600.t1.1		1127846,1125275,1124052,1123181,1122788,1122081,1121833,1121514,1121251,1118975,1118411,1118057,1117460	1128985,1127619,1125034,1123607,1122993,1122353,1121910,1121556,1121349,1119209,1118514,1118191,1117840	
chr10	1117460	1128985	1117708	1128456	-	Cre10.g425600.t2.1	Cre10.g425600.t2.1		1127846,1125275,1124052,1123181,1122788,1122081,1121833,1121514,1121251,1118975,1118411,1118057,1117460	1128985,1127544,1125034,1123607,1122993,1122353,1121910,1121556,1121349,1119209,1118514,1118191,1117840	
chr10	1129036	1131825	1129582	1131753	-	Cre10.g425650.t1.2	Cre10.g425650.t1.2		1131586,1131048,1130731,1130350,1129036	1131825,1131168,1130793,1130514,1129816	
chr10	1132016	1135205	1132126	1135121	+	Cre10.g425675.t1.1	Cre10.g425675.t1.1		1132016,1132640,1133000,1133467,1133873,1134161,1134586,1135021	1132287,1132773,1133093,1133642,1133992,1134306,1134800,1135205	
chr10	1140336	1147847	1140762	1147240	+	Cre10.g425700.t1.2	Cre10.g425700.t1.2		1140336,1140901,1142165,1142701,1143210,1143686,1144148,1144564,1145206,1145732,1146348,1146958	1140770,1141647,1142325,1142905,1143336,1143938,1144334,1144660,1145418,1145893,1146527,1147847	
chr10	1148006	1152387	1148211	1151647	+	Cre10.g425750.t1.1	Cre10.g425750.t1.1		1148006,1148373,1148517,1148766,1149094,1149393,1149821,1150276,1150931,1151504	1148256,1148444,1148627,1148825,1149147,1149545,1149985,1150620,1151051,1152387	
chr10	1152390	1157445	1153239	1157231	-	ORN1	Cre10.g425800.t1.2		1157112,1156871,1154467,1153942,1153577,1152390	1157445,1156947,1154543,1154145,1153687,1153362	Homolog of bacterial oligoribonuclease (Orn), ribonuclease H superfamily, DEDD exonuclease; REX2, REXO2; current gene model shows no organellar targeting peptide, but extension to next upstream AUG adds N-terminal MNLNIAAKTLAGPKPGAATKPISSVGSPRKSRPTVSSYAAVAAG which forms a chloroplast targeting peptide according to TargetP or Predalgo
chr10	1158096	1161387	1158356	1160070	+	Cre10.g425850.t1.2	Cre10.g425850.t1.2		1158096,1158688,1158923,1159221,1159563,1159933	1158414,1158747,1158960,1159292,1159656,1161387	
chr10	1162268	1165014	1162556	1164386	+	LHCA5	Cre10.g425900.t1.2		1162268,1163092,1163481,1163762,1164019,1164299	1162762,1163330,1163552,1163826,1164123,1165014	
chr10	1165082	1169256	1165673	1169177	-	Cre10.g425950.t1.2	Cre10.g425950.t1.2		1169078,1168950,1168791,1168152,1167305,1166866,1166451,1166066,1165082	1169256,1169003,1168851,1168228,1167397,1166939,1166650,1166221,1165852	
chr10	1169348	1171190	1169633	1171036	+	URM1	Cre10.g426000.t1.2		1169348,1169886,1170420,1170710,1170966	1169659,1169958,1170505,1170757,1171190	Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity; cd1764
chr10	1171238	1178677	1171716	1178337	+	CTPA1	Cre10.g426050.t1.2		1171238,1172142,1172516,1172924,1173570,1174046,1176617,1177028,1177400,1177914	1171789,1172206,1172704,1173001,1173652,1174817,1176772,1177063,1177504,1178677	C-terminal peptidase, Tail-specific peptidase, possibly the D1 processing peptidase; contains a PDZ domain
chr10	1175322	1176537	1175673	1176064	-	Cre10.g426102.t1.1	Cre10.g426102.t1.1		1176482,1175322	1176537,1176131	
chr10	1179034	1185427	1180040	1185345	-	MGL1	Cre10.g426152.t1.1		1185227,1185096,1184472,1183985,1183479,1182788,1182267,1181851,1181424,1181119,1179034	1185427,1185146,1184576,1184062,1183606,1183065,1182450,1182030,1181487,1181229,1180840	involved in Methionine degradation; PLP-dependent enzyme
chr10	1185482	1190967	1186023	1190816	-	OPR44	Cre10.g426200.t1.1		1189943,1185482	1190967,1189701	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr10	1191108	1194026	1191219	1193570	+	Cre10.g426250.t1.1	Cre10.g426250.t1.1		1191108,1192145,1192469,1193339	1191436,1192233,1192582,1194026	
chr10	1194032	1205487	1195011	1205376	-	PYK6	Cre10.g426292.t1.1		1205244,1204963,1204670,1204385,1203860,1203505,1203207,1202715,1202258,1201859,1201454,1201036,1200326,1199900,1198932,1198762,1198174,1197665,1197252,1196890,1196495,1195946,1194032	1205487,1205059,1204749,1204441,1204005,1203571,1203292,1202811,1202398,1201930,1201574,1201109,1200412,1200136,1199668,1198865,1198259,1197832,1197302,1196991,1196569,1196340,1195636	
chr10	1205932	1209097	1207049	1208984	-	Cre10.g426335.t1.2	Cre10.g426335.t1.2		1208911,1208793,1208654,1208481,1208056,1207480,1205932	1209097,1208833,1208700,1208490,1208215,1207691,1207103	
chr10	1205932	1209097	1207049	1208984	-	Cre10.g426335.t2.1	Cre10.g426335.t2.1		1208911,1208793,1208654,1208481,1208065,1207480,1205932	1209097,1208833,1208700,1208490,1208215,1207691,1207103	
chr10	1209147	1212101	1209935	1212042	-	Cre10.g426350.t1.1	Cre10.g426350.t1.1		1211812,1211385,1211040,1210617,1210259,1209147	1212101,1211556,1211151,1210726,1210326,1210086	Conserved expressed protein
chr10	1209264	1212101	1209935	1212042	-	Cre10.g426350.t3.1	Cre10.g426350.t3.1		1211812,1211385,1211040,1210617,1210259,1209264	1212101,1211556,1211151,1210726,1210326,1210086	Conserved expressed protein
chr10	1209147	1212048	1209935	1211826	-	Cre10.g426350.t2.1	Cre10.g426350.t2.1		1211812,1211385,1211040,1210617,1210259,1209147	1212048,1211556,1211151,1210726,1210326,1210086	Conserved expressed protein
chr10	1212208	1214573	1212252	1213888	+	TRX22	Cre10.g426400.t1.1		1212208,1213194,1213572	1212648,1213318,1214573	
chr10	1214538	1219225	1214714	1218577	+	Cre10.g426450.t1.2	Cre10.g426450.t1.2		1214538,1215053,1215433,1215942,1216611,1217101,1217640	1214771,1215151,1215570,1216355,1216809,1217326,1219225	
chr10	1219338	1222979	1219854	1221387	+	Cre10.g426500.t1.2	Cre10.g426500.t1.2		1219338,1220253	1219980,1222979	
chr10	1223678	1227373	1223833	1226318	+	Cre10.g426550.t1.2	Cre10.g426550.t1.2		1223678,1225211	1225081,1227373	
chr10	1227452	1233617	1228394	1233499	-	CYP739A6	Cre10.g426600.t1.2		1233311,1232835,1232136,1231858,1231420,1231089,1230513,1230043,1229908,1229416,1228864,1228680,1227452	1233617,1233027,1232261,1231947,1231472,1231179,1230655,1230190,1229960,1229525,1229030,1228733,1228535	Cytochrome P450, The CYP85 clan families CYP85 and CYP90 make brassinosteroid. in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols.
chr10	1234077	1235067	1234789	1235003	-	Cre10.g426616.t1.1	Cre10.g426616.t1.1		1234077	1235067	
chr10	1235178	1236859	1235604	1235988	+	Cre10.g426632.t1.1	Cre10.g426632.t1.1		1235178,1235741	1235672,1236859	
chr10	1236862	1240787	1236946	1239743	-	Cre10.g426650.t1.1	Cre10.g426650.t1.1		1240284,1239539,1239155,1238754,1238455,1237470,1236862	1240787,1239761,1239332,1238889,1238635,1237641,1237203	
chr10	1236862	1240787	1236946	1240317	-	Cre10.g426650.t2.1	Cre10.g426650.t2.1		1240284,1239539,1239155,1238754,1238455,1237470,1236862	1240787,1239610,1239332,1238889,1238635,1237641,1237203	
chr10	1240844	1246377	1241538	1246264	-	CYP739A4	Cre10.g426700.t1.1		1246108,1245865,1245723,1245378,1245164,1244760,1244298,1243710,1243339,1241928,1240844	1246377,1245932,1245780,1245454,1245218,1244885,1244412,1243989,1243486,1242311,1241715	Cytochrome P450. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols.
chr10	1246442	1252817	1246854	1252424	-	CYP739A5	Cre10.g426750.t1.2		1252224,1252076,1251723,1251302,1250734,1250334,1248965,1248698,1248147,1247799,1247231,1246442	1252817,1252093,1251894,1251427,1250970,1250440,1249112,1248750,1248256,1247811,1247438,1247010	Cytochrome P450. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols.
chr10	1252928	1258179	1253073	1256894	+	Cre10.g426800.t1.1	Cre10.g426800.t1.1		1252928,1253564,1254013,1255326,1255775,1256279,1256690	1253316,1253743,1255056,1255556,1256046,1256471,1258179	
chr10	1258228	1262299	1258306	1261908	+	Cre10.g426850.t1.1	Cre10.g426850.t1.1		1258228,1258844,1259210,1259991,1260383,1261253,1261611	1258573,1259038,1259776,1260281,1260825,1261439,1262299	
chr10	1262368	1267379	1262512	1267186	+	Cre10.g426900.t1.1	Cre10.g426900.t1.1		1262368,1263117,1263792,1264345,1265426,1265897,1266504,1266853	1262680,1263251,1264121,1264992,1265641,1266333,1266681,1267379	
chr10	1267438	1271690	1267840	1271423	+	CYP739A3	Cre10.g426950.t1.2		1267438,1268090,1268446,1268891,1269227,1269564,1269981,1270359,1270874,1271282	1267875,1268282,1268613,1268980,1269370,1269784,1270128,1270521,1271094,1271690	Cytochrome P450. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols.
chr10	1271701	1276377	1271958	1276263	-	MOC2	Cre10.g427000.t1.2		1276238,1276056,1275879,1275617,1275223,1274812,1274527,1274111,1273863,1273455,1273067,1272514,1271701	1276377,1276131,1275960,1275703,1275306,1274910,1274592,1274295,1273947,1273673,1273236,1272739,1272054	Putative mTERF domain containing protein; possibly a mitochondrial transcription termination factor
chr10	1276505	1279849	1276610	1279380	+	MNP1	Cre10.g427050.t1.2		1276505,1277153,1277593,1277960,1278397,1278728,1279173	1276875,1277278,1277663,1278071,1278496,1278887,1279849	Similar to bacterial MRP proteins. Predicted mitochondrial localization. MNP = MRP/NBP35-like P-loop NTPase
chr10	1281482	1284187	1281972	1283929	-	Cre10.g427150.t1.2	Cre10.g427150.t1.2		1283720,1283420,1283053,1282516,1281482	1284187,1283568,1283138,1282638,1282236	Isy1-like splicing family protein, involved in optimizing splicing
chr10	1284288	1285982	1284412	1285723	+	Cre10.g427200.t1.1	Cre10.g427200.t1.1		1284288,1284740,1284943,1285294	1284563,1284789,1285137,1285982	
chr10	1284288	1285982	1284412	1285723	+	Cre10.g427200.t2.1	Cre10.g427200.t2.1		1284288,1284740,1284943,1285294	1284563,1284789,1285089,1285982	
chr10	1286138	1287261	1286265	1286662	+	PRO1	Cre10.g427250.t1.2		1286138	1287261	actin-binding protein; localizes to cell body and flagella [PMID: 11739661]; (PRF1). tslethal mutant arrests with unreplicated DNA (PMID 25336509)
chr10	1287308	1290784	1287518	1290348	+	RSP2	Cre10.g427300.t1.2		1287308,1287728,1288041,1289808	1287655,1287806,1289501,1290784	Radial spoke protein 2 (RSP2). Originally identified as PF24 locus [PMID: 16507594; PMID: 7204490; PMID: 14871938; GI:37528882]
chr10	1290792	1296247	1291696	1295474	-	CYP39A2	Cre10.g427350.t1.1		1295463,1295121,1294887,1294734,1294502,1294271,1293863,1293472,1292957,1292543,1292365,1292011,1290792	1296247,1295264,1294932,1294799,1294561,1294360,1294012,1293683,1293104,1292705,1292388,1292207,1291840	
chr10	1296348	1298266	1296692	1297050	+	Cre10.g427400.t1.2	Cre10.g427400.t1.2		1296348,1296691	1296607,1298266	
chr10	1298272	1308257	1298829	1308233	-	Cre10.g427453.t1.1	Cre10.g427453.t1.1		1307315,1307102,1306840,1306337,1305516,1305161,1304859,1304269,1303800,1303357,1302885,1302528,1301921,1298272	1308257,1307196,1306945,1306738,1306181,1305394,1305044,1304724,1304168,1303716,1303232,1302758,1302367,1301820	
chr10	1308342	1312377	1308483	1311927	-	CYP739A1	Cre10.g427500.t1.2		1312069,1311759,1311418,1311215,1310972,1310599,1310311,1309913,1309540,1309154,1308342	1312377,1311963,1311576,1311304,1311115,1310780,1310458,1310108,1309760,1309360,1308483	Cytochrome P450. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols.
chr10	1312671	1317477	1313526	1317018	-	Cre10.g427550.t1.1	Cre10.g427550.t1.1		1317134,1316908,1316527,1316141,1315803,1315528,1314884,1314494,1313996,1312671	1317477,1317028,1316631,1316281,1315851,1315575,1314963,1314703,1314220,1313704	
chr10	1317562	1322457	1318180	1322187	-	KAT1	Cre10.g427600.t1.2		1322065,1321673,1321435,1320972,1320531,1320093,1319883,1319624,1319335,1318837,1318468,1317562	1322457,1321829,1321494,1321206,1320744,1320201,1319918,1319725,1319475,1319040,1318650,1318294	Microtubule-severing protein katanin, p60 (catalytic) subunit. Genbank accession AF205377; PMID: 10401578
chr10	1322578	1326401	1322839	1326182	+	Cre10.g427650.t1.2	Cre10.g427650.t1.2		1322578,1323083,1323341,1323676,1324048,1324420,1324640,1324966,1326056	1322927,1323171,1323496,1323924,1324293,1324509,1324809,1325917,1326401	
chr10	1326455	1331817	1328273	1331486	-	HEL47	Cre10.g427700.t1.2		1331167,1330512,1329865,1329400,1328747,1328510,1326455	1331817,1331041,1330254,1329525,1329182,1328620,1328302	
chr10	1333388	1340229	1333655	1339203	+	KIN9-3	Cre10.g427750.t1.2		1333388,1333869,1334111,1334455,1334745,1335090,1335397,1335699,1335996,1336195,1336590,1336994,1337607,1338078,1338401,1339044	1333739,1333943,1334161,1334527,1334887,1335242,1335498,1335836,1336042,1336398,1336836,1337457,1337817,1338191,1338838,1340229	kinesin-9 family
chr10	1341171	1347306	1341541	1345498	+	Cre10.g427800.t1.1	Cre10.g427800.t1.1		1341171,1342302,1342928,1343541,1343910,1344321,1344905	1341890,1342643,1343388,1343783,1344137,1344726,1347306	
chr10	1347594	1369700	1348918	1369347	-	Cre10.g427850.t1.1	Cre10.g427850.t1.1		1369279,1369103,1368683,1368190,1367924,1367694,1367378,1367093,1366575,1366218,1365914,1365524,1365250,1364909,1364591,1364207,1363749,1363353,1362816,1362491,1362117,1361946,1361466,1360424,1360013,1359660,1358662,1356042,1355655,1354277,1353905,1353715,1353346,1353113,1352880,1352259,1351782,1351458,1351105,1350810,1350431,1350093,1349810,1349543,1347594	1369700,1369148,1368765,1368267,1367975,1367809,1367420,1367138,1366786,1366340,1366015,1365712,1365300,1364989,1364719,1364292,1363878,1363474,1363002,1362661,1362174,1361971,1361626,1361322,1360183,1359861,1359383,1358479,1355791,1355450,1354037,1353773,1353497,1353169,1352914,1352442,1352044,1351612,1351260,1350911,1350605,1350130,1349939,1349648,1349360	
chr10	1372685	1373720	1373237	1373558	-	CSB38	Cre10.g427896.t1.2		1373703,1373474,1372685	1373720,1373584,1373360	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr10	1373931	1384330	1375027	1383893	-	Cre10.g427900.t1.1	Cre10.g427900.t1.1		1383863,1383271,1382964,1382600,1381273,1380858,1380446,1380146,1379738,1379504,1377970,1377718,1377464,1376804,1376354,1376006,1375562,1373931	1384330,1383326,1383033,1382667,1382402,1381117,1380623,1380262,1379917,1379629,1379405,1377808,1377565,1377357,1376611,1376047,1375789,1375309	
chr10	1385353	1394170	1386257	1393864	-	Cre10.g427950.t1.1	Cre10.g427950.t1.1		1393720,1393329,1393093,1391804,1391211,1390981,1390758,1390532,1390220,1389989,1388929,1388598,1388471,1387891,1387458,1387275,1386730,1385353	1394170,1393427,1393209,1392959,1391629,1391066,1390852,1390627,1390414,1390114,1389890,1388751,1388497,1388333,1387715,1387316,1387068,1386542	null-allele passenger mutation was isolated (PMID 29743196)
chr10	1394225	1400190	1394708	1400063	-	Cre10.g428000.t1.1	Cre10.g428000.t1.1		1399723,1398322,1397867,1397566,1395801,1394225	1400190,1399559,1398064,1397702,1397343,1395605	
chr10	1400249	1407190	1400810	1407112	-	Cre10.g428050.t1.1	Cre10.g428050.t1.1		1407065,1406900,1406778,1406541,1406183,1405886,1405462,1405012,1404589,1404198,1403876,1403587,1403128,1402839,1402436,1401981,1401076,1400249	1407190,1406984,1406825,1406653,1406356,1405947,1405664,1405200,1404750,1404377,1404046,1403745,1403322,1402967,1402717,1402307,1401866,1400928	null-allele mutant was isolated (PMID 29743196)
chr10	1407351	1411114	1407866	1410862	+	TMG5	Cre10.g428100.t1.1		1407351,1407742,1408107,1408959,1409347,1409659,1410323,1410769	1407625,1407893,1408745,1409141,1409576,1409985,1410509,1411114	
chr10	1411130	1416731	1411450	1416580	-	Cre10.g428150.t1.1	Cre10.g428150.t1.1		1416159,1415709,1415225,1414897,1414386,1413984,1413516,1412886,1412746,1412365,1412067,1411813,1411130	1416731,1415860,1415326,1414971,1414568,1414075,1413738,1413033,1412798,1412453,1412195,1411897,1411576	null-allele mutant was isolated (PMID 29743196)
chr10	1416831	1419793	1417027	1419240	+	Cre10.g428200.t1.2	Cre10.g428200.t1.2		1416831,1417425,1417817,1418140,1418515,1419058	1417272,1417614,1417882,1418229,1418812,1419793	null-allele mutant was isolated (PMID 29743196)
chr10	1419795	1421920	1419839	1421862	-	Cre10.g428250.t1.1	Cre10.g428250.t1.1		1421652,1421405,1420809,1420397,1419908,1419795	1421920,1421560,1421237,1420620,1420294,1419852	
chr10	1422031	1425452	1422134	1424794	+	Cre10.g428300.t1.1	Cre10.g428300.t1.1		1422031,1422393,1422726,1423081,1423841,1424140,1424766	1422316,1422489,1422929,1423599,1423966,1424501,1425452	
chr10	1425454	1427013	1426281	1426801	-	Cre10.g428350.t1.2	Cre10.g428350.t1.2		1425454	1427013	
chr10	1427161	1430852	1427265	1430632	+	PUS7	Cre10.g428400.t1.1		1427161,1427663,1428137,1428358,1429268,1429521,1429882,1430177	1427527,1427995,1428210,1428980,1429373,1429720,1429985,1430852	Possibly targeted to the mitochondria. Also contains a motif RluA found on 23S RNA-specific pseudouridine synthase.
chr10	1430875	1435980	1431317	1435887	-	Cre10.g428433.t1.1	Cre10.g428433.t1.1		1435788,1435314,1434964,1434730,1434470,1433835,1433595,1433049,1432644,1432338,1431953,1430875	1435980,1435389,1435026,1434781,1434571,1434012,1433666,1433176,1432808,1432426,1431961,1431871	Excises oxidized bases; null-allele mutant was isolated (PMID 29743196)
chr10	1430875	1435980	1431317	1435887	-	Cre10.g428433.t2.1	Cre10.g428433.t2.1		1435788,1435314,1434964,1434730,1434470,1433835,1433595,1433049,1432644,1432338,1430875	1435980,1435389,1435026,1434781,1434571,1434012,1433666,1433176,1432808,1432426,1431871	Excises oxidized bases; null-allele mutant was isolated (PMID 29743196)
chr10	1436111	1441212	1436312	1440764	+	PFH2	Cre10.g428500.t1.1		1436111,1436543,1437029,1437434,1437782,1438400,1438945,1439609,1439994,1440276,1440554	1436403,1436610,1437127,1437522,1437866,1438531,1439007,1439716,1440108,1440370,1441212	contains C-terminal ShK domain, Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_1329
chr10	1441801	1443432	1442740	1443029	+	Cre10.g428525.t1.1	Cre10.g428525.t1.1		1441801,1442007,1442330,1442693	1441924,1442110,1442452,1443432	
chr10	1443565	1447780	1443751	1447696	-	Cre10.g428550.t1.2	Cre10.g428550.t1.2		1447525,1447149,1446785,1445823,1445511,1445230,1444949,1444373,1443565	1447780,1447325,1446924,1446479,1445570,1445293,1445032,1444559,1444170	Involved in folate biosynthesis, probably mitochondrial enzyme.  Converts p-aminobenzoic acid into folate
chr10	1447891	1451822	1448289	1451599	+	Cre10.g428600.t1.1	Cre10.g428600.t1.1		1447891,1449649,1450048,1450444	1449524,1449796,1450245,1451822	
chr10	1451881	1458452	1452085	1457297	+	CDPKK1	Cre10.g428650.t1.2		1451881,1452228,1452517,1452724,1452913,1453447,1454611,1455078,1455505,1455855,1456376,1456835,1457255	1452141,1452457,1452663,1452826,1453057,1453728,1454813,1455264,1455757,1456133,1456521,1456948,1458452	null-allele mutant was isolated (PMID 29743196)
chr10	1458455	1464380	1458663	1464153	-	DIC6	Cre10.g428664.t1.1		1464099,1463742,1463079,1462443,1461849,1461369,1461040,1460458,1459673,1459224,1458455	1464380,1463940,1463176,1462601,1461918,1461580,1461205,1460634,1460238,1459355,1459017	
chr10	1464491	1471408	1464584	1470909	+	Cre10.g428678.t1.1	Cre10.g428678.t1.1		1464491,1465068,1466154,1466451,1466872,1467397,1467894,1468223,1468545,1469019,1469611,1470289,1470699	1464740,1465307,1466258,1466576,1467029,1467544,1468040,1468336,1468740,1469187,1469980,1470399,1471408	tRNA uridine 5-carboxymethylaminomethyl modification enzyme, glucose-inhibited division protein Am oxidoreductase motifs
chr10	1471424	1475670	1472028	1475449	-	Cre10.g428692.t1.1	Cre10.g428692.t1.1		1474753,1474125,1473616,1472731,1471424	1475670,1474598,1473885,1473426,1472577	
chr10	1475725	1480100	1475839	1479949	-	Cre10.g428706.t1.1	Cre10.g428706.t1.1		1479274,1478569,1478083,1476737,1475725	1480100,1478970,1478301,1477843,1476298	
chr10	1480168	1484610	1480657	1484504	-	Cre10.g428720.t1.1	Cre10.g428720.t1.1		1480168	1484610	
chr10	1484715	1489960	1485231	1489557	-	Cre10.g428734.t1.1	Cre10.g428734.t1.1		1488660,1488327,1486513,1485800,1484715	1489960,1488413,1488156,1486270,1485465	
chr10	1490371	1506382	1490468	1505953	+	Cre10.g428750.t1.1	Cre10.g428750.t1.1		1490371,1491026,1491381,1492404,1492943,1493411,1493772,1494302,1494575,1495095,1495640,1496366,1496802,1497267,1497785,1498254,1499215,1499798,1500416,1500868,1501181,1501617,1503132,1503521,1504692,1505029,1505333,1505767	1490726,1491115,1491899,1492571,1493082,1493546,1493933,1494382,1494787,1495251,1496158,1496578,1496985,1497414,1497970,1498994,1499538,1500121,1500534,1501008,1501394,1502100,1503309,1503709,1504843,1505159,1505527,1506382	
chr10	1506685	1510823	1506774	1510043	+	Cre10.g428800.t1.2	Cre10.g428800.t1.2		1506685,1506969,1507341,1507708,1508544,1509017,1509944	1506864,1507114,1507512,1508331,1508770,1509752,1510823	null-allele mutant was isolated (PMID 29743196)
chr10	1510872	1511969	1511119	1511474	+	DLT1	Cre10.g428850.t1.2		1510872	1511969	LC9 component of outer arm dynein; Tctex1 homolog (Tctex-1 binds to the cytoplasmic tail of rhodopsin) [PMID: 16195342]
chr10	1512022	1515623	1512545	1515305	+	CGL72	Cre10.g428900.t1.1		1512022,1512859,1513420,1513906,1514505,1515092	1512626,1513016,1513495,1514025,1514672,1515623	null-allele passenger mutation was isolated (PMID 29743196)
chr10	1515672	1519913	1516336	1519839	+	Cre10.g428950.t1.2	Cre10.g428950.t1.2		1515672,1516578,1516782,1517009,1517318,1517633,1518086,1518512,1518926,1519354,1519792	1516475,1516601,1516864,1517068,1517438,1517745,1518283,1518574,1519072,1519408,1519913	
chr10	1519916	1528781	1520821	1528738	-	Cre10.g428966.t1.2	Cre10.g428966.t1.2		1528735,1528544,1528271,1527938,1527707,1527118,1526861,1521540,1519916	1528781,1528675,1528338,1528103,1527805,1527486,1526896,1526678,1521250	
chr10	1528836	1534021	1529727	1533958	-	Cre10.g429000.t1.1	Cre10.g429000.t1.1		1533793,1533218,1528836	1534021,1533433,1532622	
chr10	1528836	1534011	1529727	1532905	-	Cre10.g429000.t2.1	Cre10.g429000.t2.1		1533218,1532791,1528836	1534011,1532972,1532721	
chr10	1532906	1534021	1532936	1533958	-	Cre10.g429000.t3.1	Cre10.g429000.t3.1		1533793,1533218,1532906	1534021,1533433,1532972	
chr10	1534076	1540761	1534449	1540740	-	Cre10.g429017.t1.2	Cre10.g429017.t1.2		1540644,1540262,1539961,1539554,1539175,1538653,1534076	1540761,1540495,1540028,1539719,1539273,1539042,1538508	
chr10	1540816	1552631	1541165	1552487	-	Cre10.g429050.t1.1	Cre10.g429050.t1.1		1552399,1552045,1551543,1550859,1550020,1549507,1549093,1548117,1544791,1544443,1544030,1543750,1543178,1542650,1542282,1541956,1540816	1552631,1552147,1551702,1551372,1550601,1549800,1549262,1548954,1547954,1544547,1544151,1543852,1543331,1542848,1542398,1542026,1541773	Similar to the Xeroderma pignmentosum group G protein, XPGC, and Rad2 yeast homolog [PMID: 17992532]
chr10	1552730	1558141	1553416	1557853	-	Cre10.g429100.t1.2	Cre10.g429100.t1.2		1557850,1557529,1556857,1556404,1555905,1555335,1554710,1554246,1553803,1552730	1558141,1557652,1557052,1556587,1556113,1555464,1554967,1554426,1553983,1553591	
chr10	1558282	1563331	1558529	1562896	+	PRT1	Cre10.g429150.t1.2		1558282,1558649,1559101,1560021,1560489,1560964,1561503,1561828,1562246,1562693	1558544,1558711,1559163,1560099,1560640,1561098,1561616,1561980,1562318,1563331	Similar to phosphoribosyl transferase in Arabidopsis
chr10	1563662	1569332	1563679	1568565	+	Cre10.g429200.t1.1	Cre10.g429200.t1.1		1563662,1564077,1564340,1564780,1565167,1565429,1565711,1566133,1566594,1567069,1567458,1568106	1563962,1564159,1564435,1564866,1565214,1565566,1565913,1566272,1566691,1567287,1567901,1569332	
chr10	1570302	1579563	1570627	1577315	+	Cre10.g429250.t1.1	Cre10.g429250.t1.1		1570302,1570999,1572925,1574975,1575312,1575740,1576061,1576463,1576888	1570784,1572670,1574717,1575118,1575327,1575891,1576224,1576734,1579563	
chr10	1579566	1584631	1579966	1584504	-	Cre10.g429300.t1.1	Cre10.g429300.t1.1		1583437,1582554,1582302,1581843,1580710,1579566	1584631,1583224,1582344,1582117,1581603,1580469	
chr10	1584786	1589411	1585334	1589313	-	Cre10.g429350.t1.2	Cre10.g429350.t1.2		1589145,1588741,1588366,1587912,1587431,1587202,1584786	1589411,1588851,1588445,1588026,1587571,1587254,1586988	
chr10	1590072	1596853	1590235	1596096	+	MCG1	Cre10.g429400.t1.1		1590072,1590384,1590549,1590747,1593822	1590303,1590432,1590650,1593524,1596853	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; stabilizes petG mRNA; two alternative transcripts
chr10	1597042	1603683	1597553	1601645	+	Cre10.g429450.t1.1	Cre10.g429450.t1.1		1597042,1597407,1597550,1597816,1598250,1598515,1598841,1600743	1597293,1597418,1597587,1597837,1598411,1598696,1600559,1603683	null-allele passenger mutation was isolated (PMID 29743196)
chr10	1603686	1608084	1605252	1607701	-	Cre10.g429500.t1.1	Cre10.g429500.t1.1		1607895,1603686	1608084,1607768	
chr10	1608372	1610243	1608626	1609126	+	MRPS16	Cre10.g429550.t1.2		1608372,1608600,1608763,1608975	1608532,1608696,1608808,1610243	The model is truncated at the N-terminus, lacking the sequence MVGGLRVKLVRWGFNKRPFYVLSI that can serve as an N-terminal mTP
chr10	1610292	1613464	1610418	1612887	+	Cre10.g429600.t1.2	Cre10.g429600.t1.2		1610292,1610532,1610751,1611056,1611325	1610460,1610680,1610820,1611122,1613464	
chr10	1613562	1619433	1613640	1618537	+	Cre10.g429601.t1.1	Cre10.g429601.t1.1		1613562,1614037,1614469,1615005,1615406,1615754,1617195,1617526,1618276	1613883,1614197,1614577,1615070,1615568,1616930,1617294,1617717,1619433	
chr10	1619556	1622711	1619828	1622465	-	Cre10.g429650.t1.1	Cre10.g429650.t1.1		1622454,1622247,1621996,1621601,1621251,1620419,1619556	1622711,1622307,1622047,1621702,1621444,1620970,1620176	
chr10	1622902	1626176	1623558	1623739	+	Cre10.g429702.t1.1	Cre10.g429702.t1.1		1622902	1626176	
chr10	1632872	1656483	1633223	1654672	+	Cre10.g429750.t1.1	Cre10.g429750.t1.1		1632872,1633426,1633559,1633884,1634684,1635055,1635228,1635579,1636090,1636428,1636909,1637200,1637585,1637945,1638288,1638508,1639021,1639489,1639811,1640206,1640467,1641481,1641811,1642218,1642729,1643188,1643586,1643894,1644304,1644807,1646928,1647650,1647897,1648482,1649253,1649585,1649881,1650187,1650548,1650892,1651212,1651593,1652362,1652737,1653342,1653809,1654101,1654553	1633291,1633495,1633633,1633904,1634739,1635109,1635343,1635727,1636179,1636522,1636998,1637441,1637687,1638073,1638368,1638797,1639168,1639585,1639950,1640264,1640563,1641582,1641925,1642429,1642953,1643364,1643744,1644035,1644464,1646679,1647415,1647741,1648160,1648749,1649405,1649686,1649985,1650338,1650620,1651002,1651346,1651937,1652496,1652943,1653524,1653922,1654215,1656483	
chr10	1656486	1662311	1656909	1661983	-	COQ8	Cre10.g429800.t1.2		1661894,1660836,1660274,1660049,1659424,1658686,1658262,1657944,1657595,1657251,1656486	1662311,1661777,1660604,1660201,1659582,1658874,1658444,1658040,1657668,1657412,1657035	70 kDa protein similar to yeast COQ8 protein involved in ubiquinone-10 biosynthesis (PMID: 11279158); previously called ABC1 (for Activity of bc1 complex") (PMID: 14695938); similar to At4g01660 gene product (PMID: 15710684)
chr10	1662429	1666391	1662867	1666149	-	Cre10.g429850.t1.2	Cre10.g429850.t1.2		1666077,1665548,1665305,1664803,1664054,1663779,1663431,1662429	1666391,1665594,1665374,1664981,1664102,1663849,1663509,1663116	
chr10	1666492	1673553	1666638	1673222	+	CGL156	Cre10.g429880.t1.1		1666492,1666906,1667554,1667910,1668350,1668891,1669348,1669678,1670019,1670755,1671922,1672266,1672585,1673138	1666764,1667047,1667649,1668076,1668518,1669036,1669511,1669846,1670368,1671034,1672044,1672364,1672848,1673553	Conserved in the Green Lineage
chr10	1666492	1671633	1666638	1671092	+	CGL156	Cre10.g429880.t2.1		1666492,1666906,1667551,1667910,1668350,1668891,1669348,1669678,1670019,1670755	1666764,1667047,1667649,1668076,1668518,1669036,1669511,1669846,1670368,1671633	Conserved in the Green Lineage
chr10	1666492	1671663	1666638	1671092	+	CGL156	Cre10.g429880.t3.1		1666492,1666906,1667554,1667910,1668350,1668891,1669348,1669678,1670019,1670755	1666764,1667047,1667649,1668076,1668518,1669036,1669511,1669846,1670368,1671663	Conserved in the Green Lineage
chr10	1671712	1673553	1671769	1673222	+	CGL156	Cre10.g429880.t4.1		1671712,1671922,1672266,1672585,1673138	1671790,1672044,1672364,1672848,1673553	Conserved in the Green Lineage
chr10	1673555	1676004	1674245	1675941	-	Cre10.g430000.t1.1	Cre10.g430000.t1.1		1675818,1675390,1674828,1674589,1673555	1676004,1675494,1675194,1674653,1674380	
chr10	1676152	1678397	1676272	1677789	+	UBC20	Cre10.g430050.t1.2		1676152,1676728,1676980,1677444	1676429,1676801,1677075,1678397	
chr10	1678406	1683991	1678898	1683959	-	ELG22	Cre10.g430100.t1.1		1683777,1683308,1682926,1682544,1682344,1682176,1681731,1681308,1680933,1680691,1680465,1680114,1679789,1679473,1679150,1678406	1683991,1683489,1683023,1682581,1682363,1682192,1681929,1681438,1681044,1680776,1680567,1680316,1679867,1679589,1679252,1678983	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr10	1684112	1689556	1684275	1688813	+	LPA1	Cre10.g430150.t1.2		1684112,1684998,1685723,1686360,1686814,1687062,1687384,1687756,1688126,1688389,1688684	1684680,1685108,1685825,1686517,1686864,1687161,1687471,1687819,1688200,1688454,1689556	Homologous to Low PSII Accumulation (LPA1) gene of Arabidopsis.  Also known as REP27
chr10	1689774	1695891	1690702	1695704	-	ARS3	Cre10.g430200.t2.1		1695610,1695406,1694895,1694548,1694328,1693961,1693745,1693353,1692938,1692687,1692360,1692036,1691814,1691152,1689774	1695891,1695518,1695034,1694591,1694431,1694154,1693781,1693584,1693012,1692805,1692468,1692214,1691900,1691492,1690952	
chr10	1689584	1695891	1690702	1695704	-	ARS3	Cre10.g430200.t1.2		1695610,1695406,1694895,1694548,1694328,1693961,1693745,1693353,1692938,1692687,1692360,1692036,1691814,1691152,1689584	1695891,1695518,1695034,1694591,1694431,1694154,1693781,1693584,1693012,1692805,1692468,1692214,1691900,1691492,1690952	
chr10	1696543	1702374	1696788	1701934	+	ELG21	Cre10.g430250.t1.2		1696543,1697182,1697521,1697938,1698442,1698720,1699236,1699646,1699922,1700193,1700504,1700924,1701220,1701746	1696943,1697207,1697670,1698035,1698479,1698959,1699368,1699771,1700014,1700318,1700677,1701002,1701336,1702374	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr10	1702377	1705842	1703825	1705623	-	Cre10.g430300.t1.2	Cre10.g430300.t1.2		1705449,1705204,1704761,1704262,1702377	1705842,1705294,1704878,1704416,1704040	
chr10	1706483	1709636	1706695	1708645	+	Cre10.g430350.t1.2	Cre10.g430350.t1.2		1706483,1706897,1707190,1708013,1708422	1706752,1706955,1707797,1708157,1709636	
chr10	1709647	1710682	1709946	1710535	-	Cre10.g430376.t1.1	Cre10.g430376.t1.1		1709647	1710682	
chr10	1710731	1711852	1710787	1711736	-	RPL37	Cre10.g430400.t1.2		1711702,1711494,1711190,1710731	1711852,1711607,1711291,1710822	Cytosolic 60S large ribosomal subunit protein L37
chr10	1712056	1716907	1712753	1716736	-	Cre10.g430450.t1.2	Cre10.g430450.t1.2		1716458,1716225,1715665,1715090,1714771,1714385,1714015,1713671,1713094,1712056	1716907,1716306,1715802,1715140,1714866,1714444,1714199,1713772,1713181,1712789	
chr10	1717191	1725730	1718633	1725628	-	Cre10.g430501.t1.1	Cre10.g430501.t1.1		1725559,1725252,1724534,1723481,1723007,1722535,1722107,1721711,1721413,1720635,1720113,1719771,1719375,1719030,1717191	1725730,1725424,1724988,1723539,1723135,1722627,1722210,1721858,1721478,1720801,1720332,1719848,1719527,1719122,1718699	
chr10	1727609	1729862	1728596	1729668	-	Cre10.g430550.t1.2	Cre10.g430550.t1.2		1729427,1729215,1728825,1727609	1729862,1729262,1729036,1728638	
chr10	1730603	1731894	1730735	1731862	+	Cre10.g430600.t1.1	Cre10.g430600.t1.1		1730603,1730990,1731376	1730898,1731282,1731894	
chr10	1732107	1734072	1733202	1733775	-	Cre10.g430626.t1.1	Cre10.g430626.t1.1		1733755,1732107	1734072,1733428	
chr10	1734407	1738882	1736236	1738733	-	Cre10.g430650.t1.2	Cre10.g430650.t1.2		1738706,1738410,1736784,1736402,1734407	1738882,1738458,1738258,1736599,1736254	
chr10	1739003	1761889	1739150	1761741	+	FAP308	Cre10.g430700.t1.1		1739003,1739451,1740199,1741070,1741425,1741895,1743076,1743707,1744077,1744736,1745323,1745851,1746358,1746947,1747673,1748080,1748723,1749241,1749932,1750266,1750619,1751190,1751940,1752365,1752746,1753129,1753545,1753861,1754263,1754843,1755301,1755781,1756146,1756917,1757360,1757573,1757798,1758072,1758476,1759056,1759538,1759865,1760256,1760750	1739191,1739827,1740566,1741149,1741545,1742041,1743435,1743814,1744436,1745155,1745502,1746071,1746715,1747158,1747808,1748322,1749017,1749473,1750024,1750438,1750808,1751400,1752085,1752532,1752948,1753306,1753656,1754046,1754551,1755035,1755574,1755957,1756348,1757083,1757420,1757632,1757842,1758164,1758586,1759187,1759621,1760068,1760509,1761889	null-allele mutant was isolated (PMID 29743196)
chr10	1762740	1767762	1765414	1767072	-	Cre10.g430750.t1.1	Cre10.g430750.t1.1		1767001,1766856,1766721,1766503,1766235,1762740	1767762,1766915,1766793,1766592,1766408,1765918	
chr10	1768391	1777432	1769917	1777207	-	Cre10.g430800.t1.1	Cre10.g430800.t1.1		1777142,1776818,1776149,1775792,1775546,1774837,1774395,1772013,1771607,1771167,1770802,1768391	1777432,1777052,1776592,1775947,1775626,1774944,1774529,1772175,1771773,1771262,1770921,1770109	
chr10	1777563	1782254	1777768	1781063	+	Cre10.g430850.t1.2	Cre10.g430850.t1.2		1777563,1777957,1779539,1779901,1780310	1777780,1779246,1779761,1780148,1782254	
chr10	1782413	1791777	1782470	1791451	+	Cre10.g430900.t1.1	Cre10.g430900.t1.1		1782413,1782640,1782991,1783225,1783857,1784215,1784793,1785665,1786414,1787730,1788380,1788799,1789410,1790312,1790619,1790875,1791303	1782557,1782746,1783081,1783700,1784046,1784580,1785338,1786238,1787569,1788162,1788583,1789188,1790107,1790423,1790753,1790939,1791777	
chr10	1791867	1801782	1792255	1801730	-	RAD54B	Cre10.g430950.t1.1		1801673,1801358,1800718,1800388,1800021,1799635,1799440,1799126,1798704,1798495,1798314,1798080,1797799,1797451,1797097,1796713,1796387,1795919,1795621,1795477,1795208,1794199,1791867	1801782,1801605,1800984,1800502,1800182,1799860,1799483,1799263,1798853,1798530,1798352,1798122,1797944,1797552,1797273,1796778,1796532,1796045,1795733,1795510,1795334,1794992,1794064	ChromDB CHR3414, a SWI2/SNF2-like protein in the RAD54/ATRX subclass; the yeast homologue RAD54 facilitates strand invasion by the RAD51 nucleoprotein filament
chr10	1801837	1806472	1803005	1805776	-	Cre10.g431000.t1.1	Cre10.g431000.t1.1		1805917,1805522,1805086,1804640,1804175,1803821,1801837	1806472,1805807,1805242,1804876,1804255,1803863,1803679	null-allele passenger mutation was isolated (PMID 29743196)
chr10	1806683	1818551	1806809	1817783	+	SRR13	Cre10.g431050.t1.1		1806683,1807005,1807262,1807626,1807939,1808301,1808613,1808849,1809134,1809495,1809781,1810085,1810481,1810682,1810808,1811117,1811414,1811700,1812011,1812302,1812522,1812764,1813724,1813908,1814106,1814476,1814845,1815188,1815464,1815788,1816097,1816539,1816822,1817275,1817662	1806832,1807141,1807498,1807754,1808123,1808504,1808720,1809010,1809259,1809626,1809907,1810218,1810573,1810725,1810877,1811249,1811562,1811821,1812171,1812395,1812601,1813596,1813783,1813969,1814357,1814694,1815043,1815335,1815620,1816011,1816432,1816673,1816923,1817398,1818551	speract/scavenger receptor cysteine-rich (SRCR) family protein, transmembrane glycoprotein
chr10	1806683	1818551	1806809	1817783	+	SRR13	Cre10.g431050.t2.1		1806683,1807005,1807262,1807626,1807939,1808301,1808613,1808849,1809134,1809495,1809781,1810085,1810481,1810682,1810808,1811117,1811414,1811700,1812011,1812302,1812522,1812764,1813724,1813908,1814106,1814476,1814845,1815188,1815464,1815788,1816097,1816539,1816822,1817278,1817662	1806832,1807141,1807498,1807754,1808123,1808504,1808720,1809010,1809259,1809626,1809907,1810218,1810573,1810725,1810877,1811249,1811562,1811821,1812171,1812395,1812601,1813596,1813783,1813969,1814357,1814694,1815043,1815335,1815620,1816011,1816432,1816673,1816923,1817398,1818551	speract/scavenger receptor cysteine-rich (SRCR) family protein, transmembrane glycoprotein
chr10	1820867	1829272	1821979	1829115	-	Cre10.g431100.t1.1	Cre10.g431100.t1.1		1829072,1828928,1828749,1827319,1826927,1825238,1824872,1824521,1820867	1829272,1828982,1828833,1828664,1827185,1826748,1825061,1824682,1824367	
chr10	1829382	1835221	1829487	1834851	+	FAP256	Cre10.g431150.t1.1		1829382,1829636,1829819,1830164,1830522,1830897,1831162,1831357,1831632,1832024,1832419,1832726,1833128,1833488,1833850,1834288,1834734	1829547,1829703,1829906,1830388,1830667,1831002,1831269,1831414,1831871,1832269,1832537,1832955,1833266,1833651,1834085,1834526,1835221	found in the flagellar proteome; localizes to the tip of the central and outer doublet microtubules, and remains there during assembly and disassembly; homologous to vertebrate centrosomal protein CEP104; in Matsuo et al. (2008), roc22 (rhythm of chloroplast 22) circadian rhythm mutant locus maps here; this mutation leads to a low-amplitude rhythm phenotype
chr10	1835313	1842994	1835449	1842655	+	Cre10.g431200.t1.2	Cre10.g431200.t1.2		1835313,1836436,1836827,1837558,1838847	1836276,1836700,1837416,1838652,1842994	
chr10	1843251	1854632	1845429	1854236	-	CYG5	Cre10.g431250.t1.1		1853599,1852764,1850583,1849382,1848075,1847755,1847249,1846912,1846662,1846302,1846014,1845721,1843251	1854632,1853485,1852544,1850398,1849231,1847867,1847510,1847015,1846768,1846434,1846086,1845850,1845567	Probable domain of larger protein similar to guanylate cyclase beta-2 chain from Bos taurus XP_587526.2
chr10	1855023	1858550	1855661	1857535	+	TGL16	Cre10.g431350.t1.1		1855023,1856190,1856912,1857204,1857463	1855896,1856702,1856989,1857316,1858550	
chr10	1858557	1861972	1859049	1861870	-	TRZ1	Cre10.g431400.t1.2		1861815,1861460,1861266,1861084,1860899,1860624,1860300,1860166,1859924,1859642,1859351,1858557	1861972,1861617,1861312,1861154,1860966,1860713,1860374,1860214,1859988,1859751,1859441,1859178	sequence similarity with Arabidopsis TRZ1, a nuclear tRNase Z, b-lactamase family; could be involved in tRNA 3'-end processing
chr10	1862153	1865721	1862278	1864591	+	Cre10.g431450.t1.1	Cre10.g431450.t1.1		1862153,1862378,1862500,1862803,1862954,1863252,1863523	1862281,1862428,1862636,1862875,1863024,1863363,1865721	Related to GCN5
chr10	1865787	1871249	1866647	1871133	-	Cre10.g431500.t1.1	Cre10.g431500.t1.1		1871104,1870687,1870030,1868918,1868187,1867753,1866984,1865787	1871249,1871026,1870527,1869939,1868759,1867953,1867576,1866847	
chr10	1871388	1874934	1871470	1874539	+	ADH6	Cre10.g431550.t1.1		1871388,1871681,1872056,1872402,1872591,1872952,1873229,1873450,1873950,1874272	1871515,1871851,1872147,1872456,1872674,1873035,1873318,1873636,1874128,1874934	Alcohol dehydrogenase, zinc-containing
chr10	1877083	1878046	1877260	1877708	+	Cre10.g431602.t1.1	Cre10.g431602.t1.1		1877083,1877573	1877353,1878046	
chr10	1878901	1884206	1879903	1883906	-	Cre10.g431650.t1.2	Cre10.g431650.t1.2		1883835,1883722,1883226,1882831,1882410,1882080,1881857,1881628,1881190,1878901	1884206,1883758,1883375,1882935,1882612,1882125,1881947,1881703,1881372,1880894	
chr10	1884327	1886031	1884648	1885746	+	Cre10.g431700.t1.2	Cre10.g431700.t1.2		1884327,1884986,1885243,1885499	1884788,1885076,1885370,1886031	
chr10	1886087	1893348	1886111	1892812	+	Cre10.g431750.t1.1	Cre10.g431750.t1.1		1886087,1886244,1886470,1887217,1887624,1889761,1890189,1892556	1886149,1886332,1887089,1887474,1889652,1890032,1892320,1893348	
chr10	1893637	1897398	1893959	1896682	+	ARS5	Cre10.g431800.t1.2		1893637,1894418,1894905,1895319,1895835	1894202,1894738,1895080,1895639,1897398	
chr10	1897401	1900376	1898328	1900125	-	PGM18	Cre10.g431850.t1.2		1900071,1899388,1898954,1897401	1900376,1899537,1899058,1898550	Putative phosphoglycerate mutase
chr10	1901677	1905769	1902007	1904215	+	Cre10.g431900.t1.2	Cre10.g431900.t1.2		1901677,1902518,1902835,1903367,1903889,1904139	1902062,1902615,1902884,1903460,1903920,1905769	
chr10	1906507	1916553	1907012	1914543	+	Cre10.g431950.t1.2	Cre10.g431950.t1.2		1906507,1907528,1908076,1908513,1909216,1910727,1911083,1911671,1912114,1912543,1912874,1913287,1913590,1913792,1914152	1907330,1907634,1908229,1908968,1910469,1910931,1911363,1911860,1912292,1912701,1913089,1913391,1913630,1913935,1916553	
chr10	1916561	1929198	1917139	1928953	-	DDB1	Cre10.g432000.t1.2		1928813,1928552,1927913,1927259,1926844,1926471,1925953,1925361,1924944,1924584,1924124,1923908,1923677,1923237,1922776,1922265,1921699,1921269,1920890,1920526,1920012,1919622,1919090,1918845,1918253,1917824,1916561	1929198,1928600,1927972,1927334,1926974,1926575,1926081,1925549,1925070,1924696,1924369,1923934,1923778,1923323,1922886,1922415,1921941,1921495,1921084,1920663,1920320,1919743,1919213,1918898,1918489,1917967,1917232	Homologous to eukaryotic UV-DDB1(UV-damaged DNA binding complex subunit 1 protein); Nucleus
chr10	1929347	1932928	1929584	1932125	+	FAP284	Cre10.g432050.t1.2		1929347,1929980,1930217,1930585,1931037,1931302,1931636,1931978	1929675,1930089,1930326,1930743,1931121,1931388,1931794,1932928	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr10	1929347	1932797	1929584	1932125	+	FAP284	Cre10.g432050.t2.1		1929347,1929980,1930217,1930585,1931037,1931302,1931636,1931978	1929675,1930089,1930326,1930743,1931121,1931388,1931794,1932797	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr10	1934188	1936144	1934310	1935185	+	Cre10.g432100.t1.2	Cre10.g432100.t1.2		1934188,1934993	1934553,1936144	
chr10	1936181	1945276	1937622	1945093	-	Cre10.g432150.t1.2	Cre10.g432150.t1.2		1945087,1944748,1944530,1944245,1944005,1943747,1943252,1942847,1936181	1945276,1944792,1944607,1944290,1944102,1943866,1943605,1943092,1942743	
chr10	1946081	1947686	1946618	1947381	-	Cre10.g432200.t1.2	Cre10.g432200.t1.2		1946081	1947686	
chr10	1948371	1956866	1950034	1956336	-	Cre10.g432250.t1.1	Cre10.g432250.t1.1		1956330,1955941,1955562,1955238,1954418,1953969,1948371	1956866,1956063,1955705,1955357,1954729,1954214,1953835	
chr10	1957617	1970238	1958009	1969704	+	Cre10.g432301.t1.1	Cre10.g432301.t1.1		1957617,1957971,1958705,1958893,1959088,1959385,1959992,1960246,1960503,1960739,1961034,1961316,1962930,1963502,1963661,1963867,1964134,1964516,1964709,1965012,1965204,1965475,1968653,1968890,1969458	1957895,1958492,1958764,1958969,1959170,1959806,1960138,1960356,1960616,1960855,1961210,1962773,1963310,1963534,1963723,1963965,1964403,1964569,1964780,1965080,1965320,1968543,1968709,1969327,1970238	
chr10	1970261	1978256	1970502	1977689	-	Cre10.g432350.t1.1	Cre10.g432350.t1.1		1977624,1977386,1976613,1976105,1973963,1973560,1970261	1978256,1977474,1977241,1976398,1975937,1973843,1973403	
chr10	1970261	1978256	1970502	1977689	-	Cre10.g432350.t2.1	Cre10.g432350.t2.1		1977624,1977386,1976613,1976105,1973963,1973560,1970261	1978256,1977474,1977241,1976398,1975937,1973789,1973403	
chr10	1978387	1982717	1978576	1982572	+	OPR46	Cre10.g432400.t1.2		1978387,1979406,1979766,1980474,1980918,1981248,1981695	1979218,1979501,1980202,1980754,1981057,1981492,1982717	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr10	1982727	1991966	1983675	1991154	-	Cre10.g432450.t1.1	Cre10.g432450.t1.1		1991496,1991059,1990573,1989851,1989644,1988151,1987851,1987462,1987133,1986825,1986498,1986192,1985778,1985505,1985193,1984831,1984453,1982727	1991966,1991266,1990948,1990448,1989741,1989497,1988009,1987719,1987239,1986909,1986611,1986302,1986035,1985630,1985324,1984998,1984605,1984224	
chr10	1992096	2000796	1992382	2000675	-	Cre10.g432500.t1.2	Cre10.g432500.t1.2		2000566,2000412,2000093,1999796,1999340,1998977,1998626,1998259,1997591,1997339,1997071,1996810,1996517,1996134,1995838,1995585,1995149,1994820,1994553,1994274,1993620,1992096	2000796,2000493,2000337,1999992,1999570,1999152,1998793,1998490,1997941,1997468,1997221,1996876,1996642,1996363,1995958,1995716,1995387,1994956,1994713,1994378,1994069,1993456	Condensin complex component, non-SMC subunit (Cnd1 homolog).  ChromoDB CPD341
chr10	2000947	2007298	2001092	2006501	+	KCN2	Cre10.g432550.t1.2		2000947,2001395,2001803,2002251,2002551,2003203,2003689,2004055,2004390,2005039,2005321,2005611,2006047,2006465	2001276,2001494,2001916,2002367,2002727,2003348,2003782,2004149,2004682,2005145,2005390,2005709,2006181,2007298	Belongs to Kv class; contains one K+ selective pore domain; sequence shows the K+ filter selection and voltage sensor regions; closely related to KCN1
chr10	2007315	2019815	2008725	2019575	-	ARS18	Cre10.g432600.t1.1		2019455,2019219,2018907,2018554,2018077,2017094,2016917,2016509,2015922,2015595,2013968,2013671,2013148,2012550,2012031,2011675,2010610,2010159,2009191,2007315	2019815,2019254,2019063,2018686,2018173,2017514,2016953,2016618,2016378,2015711,2015320,2013844,2013331,2012759,2012177,2011743,2011536,2010341,2009711,2009074	
chr10	2019956	2023039	2020097	2022650	+	Cre10.g432650.t1.1	Cre10.g432650.t1.1		2019956,2020331,2020624,2020909,2021189,2021486,2021800,2022175,2022519	2020199,2020386,2020753,2021013,2021290,2021560,2021925,2022331,2023039	
chr10	2023060	2025965	2023542	2025924	-	SMP10	Cre10.g432700.t1.1		2025607,2025206,2024724,2024382,2023060	2025965,2025242,2024759,2024447,2024052	Predicted snRNP core protein; SMP10 name replaces previous PRP1 name.
chr10	2026126	2028808	2026354	2028472	+	Cre10.g432750.t1.1	Cre10.g432750.t1.1		2026126,2026620,2027295,2027809	2026476,2026995,2027567,2028808	
chr10	2028946	2032487	2029084	2032114	+	Cre10.g432770.t1.2	Cre10.g432770.t1.2		2028946,2029194,2029385,2029643,2030004,2030537,2031037	2029097,2029245,2029460,2029714,2030219,2030752,2032487	
chr10	2032490	2036015	2033084	2035710	-	RPSA	Cre10.g432800.t1.2		2035695,2034981,2033543,2032490	2036015,2035564,2033712,2033155	Cytosolic 40S small ribosomal subunit protein Sa
chr10	2037044	2039825	2037684	2039653	-	FAP77	Cre10.g432850.t1.2		2039526,2039352,2038796,2037044	2039825,2039448,2039036,2037960	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG1 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]; weak Similarity to Breast Cancer 1
chr10	2040876	2045857	2040955	2044929	+	Cre10.g432900.t1.2	Cre10.g432900.t1.2		2040876,2041147,2041543,2041906,2042285,2042645,2042912,2043353,2043746,2044052,2044345,2044869	2041070,2041253,2041602,2042021,2042345,2042748,2043032,2043520,2043814,2044132,2044518,2045857	
chr10	2046156	2049703	2046302	2048919	+	Cre10.g432950.t1.1	Cre10.g432950.t1.1		2046156,2048232	2048012,2049703	
chr10	2049748	2060504	2050301	2060203	-	TSG2	Cre10.g433000.t1.1		2060356,2059840,2059456,2058782,2058376,2057946,2057641,2057149,2056776,2056494,2055978,2055490,2054946,2054669,2054143,2053441,2053119,2052705,2052243,2051758,2051188,2050798,2049748	2060504,2060203,2059605,2058859,2058495,2058046,2057763,2057312,2056956,2056623,2056157,2055657,2055226,2054730,2054296,2053667,2053204,2052857,2052335,2051898,2051367,2050878,2050415	
chr10	2060667	2068637	2060768	2068022	+	DRP8	Cre10.g433050.t1.1		2060667,2061052,2061351,2061650,2061905,2062226,2062449,2062720,2063056,2063347,2063759,2064104,2064419,2064799,2065134,2065520,2065769,2066188,2066498,2066828,2067126,2067521,2067773	2060922,2061150,2061436,2061736,2062022,2062314,2062526,2062868,2063184,2063416,2063881,2064224,2064621,2064873,2065316,2065633,2065983,2066269,2066593,2066911,2067293,2067616,2068637	Similar to Arabidopsis DRP5B (formerly ARC5)
chr10	2068696	2074705	2069344	2074424	-	Cre10.g433100.t1.2	Cre10.g433100.t1.2		2073707,2073279,2071978,2071442,2070940,2070586,2070199,2069785,2068696	2074705,2073388,2072161,2071587,2071162,2070711,2070405,2069883,2069494	
chr10	2074816	2081197	2075070	2080858	+	Cre10.g433150.t1.2	Cre10.g433150.t1.2		2074816,2075645,2076158,2076646,2076951,2077383,2077834,2078305,2078729,2079859,2080510	2075326,2075808,2076348,2076715,2077107,2077500,2077948,2078439,2079722,2080244,2081197	
chr10	2081200	2085845	2081943	2084999	-	XUV3	Cre10.g433200.t1.2		2085144,2084891,2084461,2083696,2083374,2082871,2082637,2081200	2085845,2085026,2084695,2084266,2083558,2083173,2082696,2082407	
chr10	2086396	2090847	2087283	2090343	+	XUV4	Cre10.g433250.t1.2		2086396,2087256,2087587,2088016,2088733,2089118,2089595,2089879	2087138,2087391,2087821,2088586,2088917,2089420,2089654,2090847	
chr10	2090850	2096705	2091467	2096091	-	Cre10.g433300.t1.1	Cre10.g433300.t1.1		2096054,2095286,2094820,2094466,2094233,2094015,2093534,2093199,2092854,2092298,2090850	2096705,2095734,2095056,2094513,2094326,2094075,2093705,2093239,2092982,2092487,2091995	
chr10	2096960	2116195	2099808	2115808	-	Cre10.g433350.t1.1	Cre10.g433350.t1.1		2115699,2115316,2113843,2113604,2113299,2112807,2112355,2110322,2109951,2108815,2108387,2107492,2106958,2103866,2102069,2101400,2096960	2116195,2115491,2113971,2113647,2113379,2112867,2112537,2112067,2110046,2109784,2108541,2107839,2107267,2106755,2103736,2101878,2101118	
chr10	2118789	2121725	2120107	2121621	-	Cre10.g433400.t1.2	Cre10.g433400.t1.2		2121563,2121364,2120828,2118789	2121725,2121462,2120954,2120144	
chr10	2121846	2127645	2122059	2127160	+	Cre10.g433450.t1.2	Cre10.g433450.t1.2		2121846,2122324,2122977,2123721,2124170,2124854,2125232,2125549,2126151,2126425,2127037	2122099,2122591,2123429,2123858,2124302,2124958,2125289,2125846,2126190,2126646,2127645	
chr10	2127863	2131185	2130836	2131088	-	Cre10.g433476.t1.1	Cre10.g433476.t1.1		2131052,2127863	2131185,2130992	
chr10	2131370	2138125	2131580	2137520	-	PWR10	Cre10.g433500.t1.1		2137710,2134666,2134188,2132737,2131370	2138125,2137543,2134450,2133927,2132573	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr10	2138230	2156145	2139058	2156011	-	DNL4	Cre10.g433550.t1.1		2155849,2155197,2154837,2154148,2153578,2153079,2152672,2152034,2151459,2151029,2150685,2150351,2149859,2149313,2148878,2148507,2148220,2147890,2147585,2147264,2146848,2146444,2145370,2144593,2144218,2143831,2143099,2142553,2142141,2138230	2156145,2155325,2154962,2154204,2153793,2153142,2152736,2152168,2151700,2151116,2150747,2150416,2149979,2149389,2148949,2148545,2148254,2147982,2147697,2147338,2146985,2146610,2145498,2145006,2144309,2143955,2143415,2142735,2142394,2141876	ATP-dependent DNA ligase; most similar to Arabidopsis LIG4 (AT5G57160)
chr10	2157713	2165835	2158327	2165746	-	Cre10.g433600.t1.2	Cre10.g433600.t1.2		2165659,2165295,2164813,2164292,2163788,2162886,2162480,2162235,2161910,2161432,2160993,2160372,2159876,2159551,2158882,2157713	2165835,2165426,2164887,2164345,2163855,2163015,2162559,2162328,2161969,2161584,2161097,2160550,2159982,2159632,2159060,2158545	
chr10	2165986	2169687	2166226	2169441	+	Cre10.g433650.t1.1	Cre10.g433650.t1.1		2165986,2167406,2168028,2168928	2167198,2167749,2168679,2169687	
chr10	2171106	2185095	2173196	2184073	-	Cre10.g433700.t1.1	Cre10.g433700.t1.1		2184336,2184070,2183795,2183276,2182562,2181254,2180936,2178144,2176940,2176623,2176170,2175842,2171106	2185095,2184153,2183917,2183667,2183065,2182406,2181070,2180739,2177900,2176758,2176388,2175965,2175730	null-allele passenger mutation was isolated (PMID 29743196)
chr10	2171106	2185095	2173196	2184073	-	Cre10.g433700.t2.1	Cre10.g433700.t2.1		2184336,2184070,2183795,2183276,2182562,2181254,2180936,2178144,2176940,2176623,2176170,2175842,2171106	2185095,2184201,2183917,2183667,2183065,2182406,2181070,2180739,2177900,2176758,2176388,2175965,2175730	null-allele passenger mutation was isolated (PMID 29743196)
chr10	2186181	2193074	2186287	2192098	+	PAP1	Cre10.g433750.t1.1		2186181,2186457,2186859,2187441,2187744,2188193,2188917,2189285,2189554,2190166,2190539,2191351,2192074	2186386,2186646,2186956,2187506,2187914,2188546,2189051,2189391,2189890,2190426,2190655,2191803,2193074	Class-I Nucleotidyl-transferase; adds poly(A) tails to nuclear transcripts
chr10	2193077	2196552	2193951	2196293	-	CSE21	Cre10.g433800.t1.2		2196023,2195729,2194879,2194543,2193077	2196552,2195789,2195486,2194758,2194356	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr10	2197527	2201532	2197954	2201334	-	Cre10.g433850.t1.1	Cre10.g433850.t1.1		2200848,2199954,2199502,2197527	2201532,2200783,2199694,2199346	
chr10	2201873	2204247	2202052	2203253	+	Cre10.g433866.t1.1	Cre10.g433866.t1.1		2201873,2202724,2202991,2203210	2202268,2202909,2203025,2204247	
chr10	2201873	2204247	2202052	2203253	+	Cre10.g433866.t2.1	Cre10.g433866.t2.1		2201873,2202727,2202991,2203210	2202268,2202909,2203025,2204247	
chr10	2204533	2216454	2204885	2216023	+	Cre10.g433900.t1.1	Cre10.g433900.t1.1		2204533,2205035,2205231,2206980,2207317,2207653,2208015,2208571,2208966,2209519,2210111,2210324,2210557,2210852,2211150,2211417,2211802,2214314,2215007,2215288,2215692	2204955,2205156,2206821,2207203,2207485,2207891,2208442,2208813,2209366,2209987,2210201,2210428,2210723,2211060,2211294,2211648,2214189,2214866,2215179,2215502,2216454	
chr10	2204533	2216454	2204885	2216023	+	Cre10.g433900.t2.1	Cre10.g433900.t2.1		2204533,2205035,2205231,2206980,2207317,2207653,2208015,2208571,2208966,2209522,2210111,2210324,2210557,2210852,2211150,2211417,2211802,2214314,2215007,2215288,2215692	2204955,2205156,2206821,2207203,2207485,2207891,2208442,2208813,2209366,2209987,2210201,2210428,2210723,2211060,2211294,2211648,2214189,2214866,2215179,2215502,2216454	
chr10	2216469	2219252	2217269	2218795	-	Cre10.g433950.t1.1	Cre10.g433950.t1.1		2218751,2218537,2218350,2217801,2217631,2217486,2216469	2219252,2218589,2218450,2217920,2217710,2217511,2217301	
chr10	2226175	2228322	2227110	2227763	-	Cre10.g434001.t2.1	Cre10.g434001.t2.1		2227334,2226175	2228322,2227122	
chr10	2226175	2228182	2227110	2227763	-	Cre10.g434001.t3.1	Cre10.g434001.t3.1		2227334,2226175	2228182,2227122	
chr10	2225897	2228062	2227110	2227763	-	Cre10.g434001.t1.1	Cre10.g434001.t1.1		2227334,2225897	2228062,2227122	
chr10	2248393	2253850	2248720	2253623	+	Cre10.g434150.t1.1	Cre10.g434150.t1.1		2248393,2248637,2248914,2249746,2250279,2250519,2251059,2251356,2251696,2251920,2252219	2248532,2248742,2249597,2250033,2250337,2250821,2251166,2251454,2251743,2252021,2253850	
chr10	2254250	2256162	2255014	2256055	-	Cre10.g434200.t1.1	Cre10.g434200.t1.1		2255773,2255456,2254250	2256162,2255512,2255197	
chr10	2256243	2259692	2257666	2259600	-	Cre10.g434250.t1.2	Cre10.g434250.t1.2		2259236,2259048,2258502,2256243	2259692,2259155,2258630,2257791	
chr10	2260633	2263844	2260743	2263709	+	Cre10.g434300.t1.1	Cre10.g434300.t1.1		2260633,2261100,2261668,2262017,2262641,2263032,2263354	2260910,2261511,2261865,2262100,2262865,2263105,2263844	
chr10	2263855	2268812	2264743	2268324	-	CTR2	Cre10.g434350.t1.1		2268190,2267809,2267032,2266754,2266440,2265982,2265633,2263855	2268812,2267987,2267621,2266908,2266524,2266246,2265836,2265432	Fits the pattern for TM2 and TM3: MxxxM-X13-GxxxG per Vinzenz Unger
chr10	2269087	2278032	2269730	2277942	-	PF6	Cre10.g434400.t1.2		2277873,2277371,2276829,2275123,2272843,2271829,2271510,2271041,2269087	2278032,2277624,2277214,2276669,2274963,2272687,2271691,2271352,2270906	Together with  C1a-86, C1a-34, C1a-32, C1a-18, and calmodulin, forms the central pair projection C1a;  may play a role in modulating both inner and outer dynein arm activity
chr10	2278168	2281281	2278275	2280971	+	NUOA9	Cre10.g434450.t1.2		2278168,2278480,2278670,2278977,2279548,2279906,2280291,2280586,2280898	2278330,2278574,2278825,2279134,2279694,2280115,2280411,2280764,2281281	Putative NADH:ubiquinone oxidoreductase (Complex I) 39 kDa subunit precursor, mitochondrial [gi 33943527 gb AAQ55458.1 , =NDUFA9; PMID: 15710684; PMID: 15450959]
chr10	2281753	2288694	2282122	2287291	+	Cre10.g434500.t1.1	Cre10.g434500.t1.1		2281753,2282245,2283386,2283744,2284101,2284452,2284738,2286601	2282151,2283160,2283587,2283901,2284245,2284615,2286438,2288694	
chr10	2289977	2291438	2290021	2291357	-	Cre10.g434550.t1.2	Cre10.g434550.t1.2		2289977	2291438	
chr10	2293403	2302279	2293841	2301445	+	FAP148	Cre10.g434600.t1.2		2293403,2294166,2294603,2294991,2295559,2296025,2296573,2297104,2300473,2301003	2293890,2294467,2294722,2295217,2295754,2296392,2296843,2300320,2300854,2302279	Flagellar Associated Protein with cation channel domain, found in the flagellar proteome
chr10	2302473	2307474	2302880	2306535	+	CTR3	Cre10.g434650.t1.1		2302473,2303281,2303653,2304402,2304744,2305022,2305660,2306096	2303170,2303459,2304071,2304556,2304831,2305459,2305817,2307474	copper transport related; high similarity to CTR type copper ion transporter CTR2 (q.v.), of which it is a close neighbour in the genome (33.5 kb away); has the motif MxxxM-X13-GxxxG per Vinzenz Unger, but appears to lack TM2 and TM3; appears to have cleavable signal sequence; putative copper transport accessory protein
chr10	2307477	2312742	2308131	2312026	-	Cre10.g434700.t1.2	Cre10.g434700.t1.2		2312367,2311155,2310588,2307477	2312742,2312065,2310916,2310264	
chr10	2312913	2314674	2313247	2314576	+	Cre10.g434726.t1.1	Cre10.g434726.t1.1		2312913,2314096	2313289,2314674	
chr10	2315063	2319544	2315335	2318946	+	AAI1	Cre10.g434750.t1.2		2315063,2315942,2316252,2316590,2317742,2318018,2318313,2318556	2315818,2316082,2316408,2316707,2317868,2318170,2318411,2319544	acetohydroxy acid isomeroreductase (EC 1.1.1.86); ILVC; ketol-acid reductoisomerase; expected plastidic by homology, but predicted as mitochondrial by Target-P
chr10	2319546	2322246	2319915	2322212	-	Cre10.g434800.t1.1	Cre10.g434800.t1.1		2321979,2321821,2321560,2321215,2320756,2320299,2319546	2322246,2321887,2321665,2321323,2320876,2320385,2320119	
chr10	2322713	2336172	2323881	2335841	-	Cre10.g434850.t1.1	Cre10.g434850.t1.1		2335414,2334912,2334524,2333437,2333044,2332382,2331859,2331612,2331157,2330822,2330186,2327928,2327475,2326921,2325918,2324143,2322713	2336172,2335207,2334739,2334276,2333195,2332859,2332056,2331672,2331440,2330968,2330601,2330008,2327720,2327166,2326738,2325766,2323967	
chr10	2336543	2343564	2336740	2343124	+	Cre10.g434900.t1.1	Cre10.g434900.t1.1		2336543,2337492,2337880,2338256,2338751,2339155,2339868,2340391,2340922,2341344,2341652,2343013	2337245,2337618,2337955,2338381,2338809,2339257,2340074,2340561,2340981,2341425,2341872,2343564	
chr10	2343613	2346874	2343718	2345108	+	Cre10.g434950.t1.2	Cre10.g434950.t1.2		2343613,2344330,2344602,2345078	2344139,2344371,2344699,2346874	
chr10	2347788	2349432	2348241	2349403	-	Cre10.g434967.t1.1	Cre10.g434967.t1.1		2349386,2347788	2349432,2349163	
chr10	2354037	2355092	2354773	2354942	-	Cre10.g434983.t1.1	Cre10.g434983.t1.1		2354037	2355092	
chr10	2355167	2356552	2356001	2356490	-	Cre10.g435000.t1.2	Cre10.g435000.t1.2		2356473,2355167	2356552,2356164	
chr10	2359363	2364074	2359876	2362889	+	Cre10.g435050.t1.1	Cre10.g435050.t1.1		2359363,2359852,2360343,2361384,2361643,2362092,2362472,2362841	2359639,2360021,2361194,2361467,2361850,2362281,2362615,2364074	
chr10	2359493	2364074	2359876	2362889	+	Cre10.g435050.t2.1	Cre10.g435050.t2.1		2359493,2359852,2360343,2361384,2361643,2362092,2362472,2362841	2359639,2360021,2361194,2361467,2361850,2362281,2362615,2364074	
chr10	2365313	2367724	2365367	2366703	+	Cre10.g435100.t1.2	Cre10.g435100.t1.2		2365313,2365924,2366173,2366673	2365755,2365929,2366270,2367724	
chr10	2371663	2374194	2371856	2373214	+	Cre10.g435200.t1.2	Cre10.g435200.t1.2		2371663,2372466,2372687,2373184	2372277,2372471,2372784,2374194	
chr10	2374225	2388212	2375419	2387858	-	NIC13	Cre10.g435250.t1.1		2387732,2387234,2383689,2383285,2382727,2382422,2382012,2381330,2380819,2380435,2379794,2379152,2378644,2378291,2377887,2377553,2377162,2376730,2376216,2374225	2388212,2387323,2383761,2383375,2382950,2382453,2382131,2381508,2380954,2380584,2380128,2379314,2378782,2378355,2377946,2377612,2377224,2376816,2376346,2375594	A nitrilase/cyanide hydratase family protein
chr10	2388323	2395248	2388475	2394390	+	AAP1	Cre10.g435300.t1.2		2388323,2389220,2389540,2390115,2390459,2391068,2391464,2391846,2392362,2392792,2393263,2393696,2394294	2388638,2389283,2389625,2390206,2390659,2391219,2391590,2391902,2392535,2392976,2393339,2393835,2395248	Similar to Arabidopsis NCBI accession # CAB86013. Probably organelle-located, by TargetP prediction and similarity to AT5G04710
chr10	2388323	2395474	2388475	2394390	+	AAP1	Cre10.g435300.t2.1		2388323,2389220,2389540,2390115,2390459,2391068,2391464,2391846,2392362,2392792,2393263,2393696,2394294	2388638,2389283,2389625,2390206,2390659,2391219,2391590,2391902,2392535,2392976,2393339,2393835,2395474	Similar to Arabidopsis NCBI accession # CAB86013. Probably organelle-located, by TargetP prediction and similarity to AT5G04710
chr10	2395523	2398240	2395833	2396990	+	ESU1	Cre10.g435350.t2.1		2395523,2396136,2396317,2396852	2395883,2396226,2396403,2398240	The endosulfine domain is a conserved region found in both cAMP-regulated phosphoprotein 19 (ARPP-19) and Alpha/Beta endosulfine. No function has yet been assigned to ARPP-19. Endosulfine is the endogenous ligand for the ATP-dependent potassium (K ATP) channels; this is the shorter and more abundant of two isoforms differing at N-terminus (none appears organelle-targeted)
chr10	2395363	2398240	2396193	2396990	+	ESU1	Cre10.g435350.t1.1		2395363,2396136,2396317,2396852	2395883,2396226,2396403,2398240	The endosulfine domain is a conserved region found in both cAMP-regulated phosphoprotein 19 (ARPP-19) and Alpha/Beta endosulfine. No function has yet been assigned to ARPP-19. Endosulfine is the endogenous ligand for the ATP-dependent potassium (K ATP) channels; this is the shorter and more abundant of two isoforms differing at N-terminus (none appears organelle-targeted)
chr10	2398743	2404914	2398958	2404099	+	Cre10.g435400.t1.2	Cre10.g435400.t1.2		2398743,2399559,2399925,2400206,2400946,2401294,2401676,2402116,2402718,2403088,2403673,2404042	2398990,2399622,2400029,2400274,2400999,2401404,2401735,2402427,2402888,2403291,2403798,2404914	
chr10	2404917	2409272	2406724	2408223	-	CPL2	Cre10.g435450.t1.2		2408615,2408450,2407133,2404917	2409272,2408503,2408384,2406945	Conserved, expressed, transcription factor like protein
chr10	2409323	2412392	2409566	2412342	-	EFT2	Cre10.g435500.t1.1		2412156,2411648,2411132,2410880,2410392,2410012,2409323	2412392,2411992,2411246,2410989,2410577,2410124,2409699	Elongation factor Ts-like protein, homolog of Arabidopsis AAV43776 - pfam889, EF_TS
chr10	2412493	2415774	2412556	2415018	+	DOH1	Cre10.g435550.t1.2		2412493,2412788,2413202,2413460,2414161,2414775	2412713,2412908,2413295,2413636,2414328,2415774	hydroxylates deoxyhypusine, the last step in formation of hypusine (PMID: 17476569); this unusual aminoacid is found uniquely on a specific residue of eIF5 and is important for the control of cellular proliferation and growth (PMID: 16600425); ts-lethal mutant was isolated (PMID 29743196)
chr10	2415777	2417432	2415836	2417323	-	Cre10.g435600.t1.1	Cre10.g435600.t1.1		2417262,2417085,2416816,2416457,2416061,2415777	2417432,2417188,2416935,2416537,2416141,2415980	
chr10	2417543	2423444	2417686	2422470	+	HPT1	Cre10.g435650.t1.1		2417543,2417826,2418242,2418929,2419149,2419658,2420199,2420540,2421096,2421350,2421735,2422237	2417742,2418027,2418541,2418965,2419309,2419821,2420255,2420810,2421158,2421478,2421966,2423444	membrane hexose-phosphate transporter, Major Facilitator Superfamily; similarity to bacterial uhpC protein, with dual transport and sensing role for glucose-6-phosphate, and to putative glycerol-3-phosphate transporter of Cyanidioschyzon merolae (CMQ264C)
chr10	2423447	2430622	2425690	2430029	-	Cre10.g435750.t1.1	Cre10.g435750.t1.1		2430149,2429352,2429169,2428924,2428609,2428286,2427998,2427683,2427443,2427141,2426816,2426514,2426112,2423447	2430622,2430056,2429197,2428997,2428727,2428362,2428119,2427763,2427508,2427239,2426881,2426631,2426266,2425849	
chr10	2431277	2433802	2432232	2433027	-	Cre10.g435775.t1.1	Cre10.g435775.t1.1		2432865,2431277	2433802,2432643	
chr10	2437765	2444392	2438559	2444253	-	CSP41B	Cre10.g435800.t1.2		2444190,2443839,2443390,2443041,2441952,2441017,2440582,2440142,2439704,2439379,2438916,2437765	2444392,2443968,2443478,2443124,2441997,2441069,2440698,2440306,2439832,2439504,2439045,2438633	Cleaves RNA in vitro, but appears necessary for stabilizing Cp mRNA in Arabidopsis and spinach; Arabidopsis homolog binds multiple mRNA and rRNA and interacts with Csp41a in multimeric complexes; also found associated with ribosomes and RNA polymerase; cp ribosome-associated protein RAP38; similar to NAD-dependent nucleoside-diphosphate-sugar epimerase/dehydratase
chr10	2444440	2447872	2445051	2447708	-	CPLD24	Cre10.g435850.t1.2		2447681,2447501,2447164,2446899,2446572,2446215,2446026,2445658,2445291,2444440	2447872,2447566,2447244,2446935,2446642,2446299,2446087,2445759,2445446,2445165	Conserved expressed protein, perhaps chloroplast targeted
chr10	2447993	2452884	2448093	2452753	+	Cre10.g435900.t1.1	Cre10.g435900.t1.1		2447993,2448517,2449314,2449814,2450336,2450694,2451453,2451819,2452105,2452654	2448329,2449045,2449581,2449962,2450416,2451061,2451528,2451908,2452359,2452884	
chr10	2452887	2457512	2453320	2457508	-	OPR47	Cre10.g435950.t1.1		2457143,2456325,2455902,2455465,2455194,2454810,2454390,2453958,2452887	2457512,2456979,2456137,2455669,2455278,2455018,2454518,2454112,2453696	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr10	2457560	2474452	2458224	2474423	-	Cre10.g436000.t1.1	Cre10.g436000.t1.1		2474312,2473942,2473658,2473414,2473148,2472873,2472624,2472227,2471916,2471710,2471427,2471216,2470915,2470458,2470011,2469798,2469494,2468978,2468710,2468377,2468083,2467812,2467433,2467092,2466729,2466457,2466053,2465688,2465302,2464779,2464485,2464059,2463699,2463263,2462859,2462405,2462028,2461725,2461299,2461015,2460552,2460036,2459475,2459151,2458761,2457560	2474452,2474114,2473793,2473503,2473248,2472969,2472761,2472448,2472040,2471764,2471590,2471286,2471017,2470728,2470225,2469852,2469628,2469243,2468800,2468502,2468230,2467923,2467659,2467198,2466863,2466588,2466251,2465869,2465415,2464928,2464655,2464188,2463862,2463517,2462996,2462631,2462204,2461831,2461541,2461103,2460696,2460231,2459809,2459275,2459004,2458496	
chr10	2474544	2475753	2474608	2475314	+	FSD1	Cre10.g436050.t1.2		2474544	2475753	superoxide dismutase [Fe], chloroplast precursor; iron superoxide dismutase; (FeSOD)
chr10	2475757	2477852	2475832	2477578	-	Cre10.g436053.t1.1	Cre10.g436053.t1.1		2477264,2477130,2476684,2476343,2475757	2477852,2477183,2476854,2476483,2476091	
chr10	2477953	2484191	2478260	2482874	+	MLK1	Cre10.g436100.t1.1		2477953,2478436,2479112,2479669,2480166,2480985,2482162,2482565	2478353,2478618,2479446,2480024,2480818,2481986,2482446,2484191	Mixed lineage protein kinase with a GAF domain, which is a domain present in phytochrome and CGMP-specific phosphodiesterases. A serine/threonine protein kinase which has a GAF domain, a potential chromophore binding domain.
chr10	2477953	2484191	2478260	2482874	+	MLK1	Cre10.g436100.t2.1		2477953,2478439,2479112,2479669,2480166,2480985,2482162,2482565	2478353,2478618,2479446,2480024,2480818,2481986,2482446,2484191	Mixed lineage protein kinase with a GAF domain, which is a domain present in phytochrome and CGMP-specific phosphodiesterases. A serine/threonine protein kinase which has a GAF domain, a potential chromophore binding domain.
chr10	2484432	2486762	2484724	2486251	+	COA6	Cre10.g436150.t1.1		2484432,2484982,2485269,2485544,2485843,2486140	2484847,2485042,2485414,2485630,2485986,2486762	Catalyzes the final step (of five) of pantothenate biosynthesis from CoA.  Similary to COA7
chr10	2487253	2503624	2487476	2502586	+	Cre10.g436200.t1.1	Cre10.g436200.t1.1		2487253,2487638,2488051,2488481,2488997,2489245,2489564,2491190,2494286,2494647,2494967,2495362,2495883,2496916	2487563,2487836,2488299,2488756,2489125,2489432,2491072,2494123,2494504,2494823,2495230,2495700,2496752,2503624	
chr10	2503753	2507094	2504206	2506674	+	Cre10.g436250.t1.2	Cre10.g436250.t1.2		2503753,2504835,2505197,2505507,2506146	2504527,2505028,2505213,2505847,2507094	
chr10	2507220	2508952	2507686	2508844	-	Cre10.g436300.t1.2	Cre10.g436300.t1.2		2508781,2508515,2508198,2507921,2507220	2508952,2508641,2508253,2508021,2507765	
chr10	2509084	2512492	2509511	2512400	-	SHKF1	Cre10.g436350.t1.1		2512205,2511860,2510863,2510508,2510131,2509084	2512492,2511988,2511033,2510647,2510247,2509758	possible shikimate kinase (EC 2.7.1.71); based on similarity to rice shikimate kinase (GenBank BAD83413); predicted plastid location by Target-P and by homology
chr10	2512603	2515603	2512665	2514820	+	Cre10.g436400.t1.1	Cre10.g436400.t1.1		2512603,2513236,2514478	2513007,2513733,2515603	
chr10	2515617	2520772	2516473	2520285	-	Cre10.g436450.t1.2	Cre10.g436450.t1.2		2520554,2520264,2519989,2519616,2518330,2517239,2515617	2520772,2520443,2520114,2519744,2519205,2518026,2517050	
chr10	2515617	2521052	2516473	2520285	-	Cre10.g436450.t2.1	Cre10.g436450.t2.1		2520554,2520264,2519989,2519616,2518330,2517239,2515617	2521052,2520443,2520114,2519744,2519205,2518026,2517050	
chr10	2521153	2525244	2521232	2524478	+	Cre10.g436500.t1.2	Cre10.g436500.t1.2		2521153,2521568,2521927,2522378,2522935,2523560,2524075,2524376	2521316,2521676,2522009,2522485,2523165,2523684,2524168,2525244	SurE is known to be related to starvation survival
chr10	2526075	2528332	2526133	2527601	+	LCI5	Cre10.g436550.t1.2		2526075,2526451,2526775	2526199,2526512,2528332	low-complexity repeat protein, probably serving as a linker between RuBisCO proteins in the pyrenoid matrix; regulated by CCM1 [PMID: 15235119]; phopshorylated under low CO2; essential for pyrenoid formation
chr10	2528337	2531992	2528790	2531861	-	Cre10.g436600.t1.2	Cre10.g436600.t1.2		2530928,2530625,2529638,2529264,2528337	2531992,2530752,2530297,2529432,2528964	
chr10	2532123	2537691	2532170	2537004	+	HEL45	Cre10.g436650.t1.1		2532123,2532280,2532613,2533599,2533955,2534319,2534876,2535233,2535691,2535976,2536332,2536795	2532196,2532345,2533354,2533706,2534039,2534446,2535005,2535406,2535767,2536100,2536621,2537691	
chr10	2537953	2539668	2538055	2539482	+	Cre10.g436700.t1.2	Cre10.g436700.t1.2		2537953,2538531,2538812,2539163,2539437	2538187,2538606,2538905,2539274,2539668	
chr10	2539677	2567402	2540644	2566978	-	Cre10.g436800.t1.1	Cre10.g436800.t1.1		2566835,2566220,2565891,2565613,2565286,2564695,2564350,2564093,2563725,2563431,2563091,2562888,2562563,2562287,2562033,2561737,2561266,2561073,2560538,2560065,2559077,2558744,2558290,2557848,2557624,2557319,2556980,2556179,2555751,2555469,2555280,2554968,2554705,2553961,2553582,2553243,2552956,2552310,2551957,2551628,2551336,2551083,2550831,2550526,2549895,2549516,2549123,2548724,2548381,2548001,2547788,2547465,2547194,2546888,2546257,2545902,2545536,2545247,2544893,2544304,2543682,2541909,2541686,2539677	2567402,2566331,2566085,2565753,2565387,2565083,2564530,2564179,2563834,2563526,2563235,2562943,2562692,2562352,2562191,2561906,2561531,2561128,2560919,2560411,2559892,2558968,2558607,2558001,2557676,2557471,2557123,2556771,2556000,2555636,2555327,2555130,2554800,2554493,2553809,2553428,2553093,2552789,2552101,2551797,2551431,2551239,2550913,2550649,2550219,2549762,2549325,2548943,2548575,2548213,2547871,2547620,2547320,2547033,2546649,2546117,2545744,2545349,2545042,2544746,2544084,2543554,2541784,2541521	
chr10	2539677	2567202	2540644	2566978	-	Cre10.g436800.t2.1	Cre10.g436800.t2.1		2566835,2566220,2565891,2565613,2565286,2564695,2564350,2564093,2563725,2563431,2563091,2562888,2562563,2562287,2562033,2561737,2561266,2561073,2560538,2560065,2559077,2558744,2558290,2557848,2557624,2557319,2556980,2556179,2555751,2555469,2555280,2554968,2554705,2553961,2553582,2553243,2552956,2552310,2551957,2551628,2551336,2551083,2550831,2550526,2549895,2549516,2549123,2548724,2548381,2548001,2547788,2547465,2547194,2546888,2546257,2545902,2545536,2545247,2544893,2544304,2543682,2541909,2541686,2539677	2567202,2566331,2566085,2565753,2565387,2565083,2564530,2564179,2563834,2563526,2563235,2562943,2562692,2562352,2562191,2561906,2561531,2561128,2560919,2560411,2559892,2558968,2558607,2558001,2557676,2557471,2557123,2556771,2556000,2555636,2555327,2555130,2554800,2554493,2553809,2553428,2553093,2552789,2552101,2551797,2551431,2551239,2550913,2550649,2550219,2549762,2549325,2548943,2548575,2548213,2547871,2547620,2547320,2547033,2546649,2546117,2545744,2545349,2545042,2544746,2544084,2543554,2541784,2541521	
chr10	2568272	2571283	2568628	2570801	+	Cre10.g436850.t1.2	Cre10.g436850.t1.2		2568272,2568916,2569189,2569480,2569809,2570017,2570258,2570586	2568631,2568993,2569242,2569574,2569884,2570136,2570324,2571283	
chr10	2571336	2574951	2571802	2574861	-	TAM41	Cre10.g436900.t1.2		2574833,2574712,2574502,2574250,2573925,2573608,2573312,2572895,2572510,2571336	2574951,2574767,2574558,2574318,2574047,2573691,2573452,2573052,2572650,2572232	Matrix factor involved in mitochondrial protein import. Similar to Arabidopsis Tam41 (AT3G47630.2) and to yeast Tam41 (YGR046W).
chr10	2575045	2579621	2575460	2579471	-	Cre10.g436950.t1.2	Cre10.g436950.t1.2		2579338,2579008,2577719,2577440,2577196,2577051,2575869,2575045	2579621,2579183,2578625,2577558,2577300,2577088,2576037,2575673	
chr10	2580334	2583404	2580437	2582881	+	Cre10.g437000.t1.2	Cre10.g437000.t1.2		2580334,2580866,2581161,2581337,2581646,2581789,2582047,2582464	2580581,2580952,2581201,2581388,2581688,2581875,2582318,2583404	
chr10	2583406	2585851	2583679	2585700	-	ATP11	Cre10.g437050.t1.2		2585646,2585520,2585141,2584789,2584416,2584047,2583406	2585851,2585552,2585251,2584874,2584532,2584167,2583811	Putative assembly factor 1 for the F1 component of the mitochondrial ATP synthase complex; homolog of yeast protein ATP11 (named ATPAF1 in mammals) [PMID: 1532796; PMID: 11410595]. N-terminal mitochondrial targeting sequence predicted by TargetP.
chr10	2585971	2588239	2586270	2588202	-	Cre10.g437100.t1.1	Cre10.g437100.t1.1		2588151,2587814,2587535,2587119,2586908,2586668,2585971	2588239,2588077,2587623,2587359,2587005,2586769,2586460	
chr10	2588402	2595471	2589990	2595155	-	PPR6	Cre10.g437150.t1.2		2594537,2594225,2593843,2593045,2592591,2592013,2591476,2591186,2588402	2595471,2594266,2594012,2593255,2592677,2592382,2591755,2591293,2590993	PentratricoPeptide Repeat protein with a SmR-like and a cyclin domain
chr10	2598172	2606166	2598601	2604023	+	Cre10.g437201.t1.1	Cre10.g437201.t1.1		2598172,2598970,2600417,2600803,2603548,2603745	2598819,2600159,2600577,2603320,2603616,2606166	
chr10	2606176	2607961	2606334	2607804	-	Cre10.g437250.t1.2	Cre10.g437250.t1.2		2607572,2607290,2606726,2606176	2607961,2607429,2606785,2606463	
chr10	2608142	2625757	2608539	2625174	+	Cre10.g437300.t1.1	Cre10.g437300.t1.1		2608142,2608476,2609231,2609569,2610376,2610720,2611047,2611397,2611708,2612063,2612378,2613020,2613224,2613537,2613758,2614314,2614643,2615080,2615432,2616466,2616952,2619614,2620214,2622371,2622726,2623704	2608380,2609098,2609400,2610194,2610466,2610841,2611231,2611527,2611832,2612231,2612809,2613060,2613296,2613583,2614094,2614488,2614917,2615281,2616270,2616765,2619526,2620050,2622180,2622566,2623451,2625757	
chr10	2625882	2631811	2626089	2630443	+	MCP12	Cre10.g437350.t1.2		2625882,2626500,2626856,2627443,2627814,2628171,2628389,2628733,2629066,2629596	2626367,2626548,2627129,2627584,2627953,2628194,2628504,2628898,2629351,2631811	calcium-binding EF hand domain
chr10	2632792	2635112	2633400	2634601	+	Cre10.g437400.t1.2	Cre10.g437400.t1.2		2632792,2633683,2634170	2633464,2633934,2635112	
chr10	2635157	2639941	2636517	2639670	-	Cre10.g437450.t1.2	Cre10.g437450.t1.2		2639819,2639652,2639313,2639020,2638323,2637912,2637645,2637399,2637001,2635157	2639941,2639716,2639555,2639169,2638569,2638015,2637755,2637464,2637234,2636727	
chr10	2640042	2641313	2640118	2640859	+	TOM7	Cre10.g437500.t1.2		2640042,2640760	2640205,2641313	Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane of 7 kDa) InterPro:IPR012621
chr10	2641726	2648021	2642519	2647442	-	Cre10.g437550.t1.1	Cre10.g437550.t1.1		2647235,2646918,2646611,2646230,2645935,2644708,2641726	2648021,2646956,2646783,2646346,2646001,2645739,2644517	
chr10	2651832	2652353	2651890	2652107	+	Cre10.g437601.t1.1	Cre10.g437601.t1.1		2651832	2652353	
chr10	2654006	2659511	2654599	2659405	-	Cre10.g437650.t1.1	Cre10.g437650.t1.1		2659270,2658773,2658440,2657351,2655937,2654006	2659511,2658951,2658626,2658178,2657245,2655852	
chr10	2659792	2661963	2660031	2661604	+	Cre10.g437700.t1.2	Cre10.g437700.t1.2		2659792,2660193,2660478,2660992,2661215,2661371	2660130,2660285,2660883,2661081,2661289,2661963	
chr10	2659792	2661963	2660031	2661604	+	Cre10.g437700.t2.1	Cre10.g437700.t2.1		2659792,2660193,2660478,2661215,2661371	2660130,2660285,2660883,2661289,2661963	
chr10	2660171	2661963	2660204	2661604	+	Cre10.g437700.t3.1	Cre10.g437700.t3.1		2660171,2660478,2661215,2661371	2660285,2660883,2661289,2661963	
chr10	2661976	2674691	2663164	2674535	-	Cre10.g437800.t1.1	Cre10.g437800.t1.1		2674407,2674012,2673655,2673416,2672969,2672681,2672413,2672172,2671855,2671510,2671203,2670783,2670433,2669923,2669708,2669398,2663910,2663405,2661976	2674691,2674141,2673768,2673497,2673189,2672762,2672552,2672288,2672016,2671596,2671275,2670951,2670597,2670210,2669837,2669517,2669122,2663684,2663287	
chr10	2674746	2677991	2675012	2677824	-	CIA6	Cre10.g437829.t1.2		2677703,2677144,2676166,2675635,2674746	2677991,2677512,2676986,2675916,2675519	Conserved in the Green Lineage; contains SET domain methyltransferase domain, but no activity was demonstrated; mutant shows impaired growth under very low CO2; lower expression of CCP1, LCIB and CAH4 and a disorganized pyrenoid
chr10	2678102	2680723	2678240	2680411	+	Cre10.g437850.t1.1	Cre10.g437850.t1.1		2678102,2678346,2679051,2679517,2679937	2678258,2678399,2679239,2679639,2680723	
chr10	2680725	2684571	2681915	2684487	-	Cre10.g437900.t1.1	Cre10.g437900.t1.1		2684401,2684154,2683884,2683630,2683403,2683130,2682919,2682377,2682223,2680725	2684571,2684277,2684021,2683759,2683452,2683255,2683026,2682716,2682257,2682017	Putative pre-mRNA-splicing factor, similar to PRP39 and plant protein of unknown function
chr10	2680725	2684571	2681915	2684487	-	Cre10.g437900.t2.1	Cre10.g437900.t2.1		2684401,2684154,2683884,2683630,2683403,2683130,2682919,2682377,2682223,2680725	2684571,2684277,2684021,2683759,2683452,2683255,2683026,2682713,2682257,2682017	Putative pre-mRNA-splicing factor, similar to PRP39 and plant protein of unknown function
chr10	2684806	2695221	2685611	2694788	-	Cre10.g437950.t1.2	Cre10.g437950.t1.2		2695146,2694547,2694298,2693842,2693411,2692813,2692463,2692088,2691626,2691223,2690806,2690279,2689798,2689501,2688538,2688223,2688025,2687645,2687182,2686795,2686325,2684806	2695221,2694859,2694451,2693953,2693512,2692941,2692564,2692228,2691719,2691393,2690945,2690511,2689959,2689602,2689300,2688323,2688070,2687808,2687358,2686896,2686631,2686175	
chr10	2695332	2699010	2695445	2698225	+	Cre10.g438000.t1.1	Cre10.g438000.t1.1		2695332,2695816,2696077,2696417,2696732,2696950,2697171,2698225	2695651,2695894,2696287,2696519,2696793,2697059,2698136,2699010	
chr10	2699396	2703581	2700471	2703518	-	KAS3	Cre10.g438050.t1.1		2703191,2702909,2702323,2702047,2701756,2701464,2700795,2699396	2703581,2703007,2702669,2702155,2701862,2701572,2701234,2700652	
chr10	2703692	2706820	2703756	2706447	+	PGP2	Cre10.g438100.t1.2		2703692,2703918,2704174,2704582,2704937,2705179,2705520,2705802,2706116,2706363	2703829,2703985,2704332,2704716,2705028,2705297,2705594,2705870,2706156,2706820	Phosphoglycolate phosphatase (EC 3.1.3.18), chloroplast precursor; similar to Chlamydomonas PGP1
chr10	2706972	2711755	2707176	2711297	+	Cre10.g438150.t1.2	Cre10.g438150.t1.2		2706972,2707282,2707441,2707694,2707995,2708559,2708930,2709327,2709635,2710079	2707193,2707357,2707550,2707759,2708288,2708644,2709013,2709445,2709820,2711755	
chr10	2712452	2719459	2712670	2718948	+	Cre10.g438200.t1.2	Cre10.g438200.t1.2		2712452,2712776,2712935,2713341,2713661,2714249,2714620,2715005,2715312,2715752,2716014,2716464,2716824,2717433	2712687,2712851,2713044,2713406,2713978,2714334,2714703,2715123,2715497,2715817,2716136,2716601,2717141,2719459	
chr10	2719855	2724856	2719979	2723921	+	LAT2	Cre10.g438250.t1.1		2719855,2720222,2720526,2721349,2721638	2720051,2720356,2721101,2721480,2724856	Null mutants are sensitive to the actin-depolymerizing drug Latrunculin B; belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr10	2724859	2727684	2725010	2727599	-	LTH4	Cre10.g438300.t1.2		2727536,2727234,2726512,2726232,2724859	2727684,2727356,2727150,2726366,2725856	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr10	2729755	2733776	2730181	2732807	+	LTH3	Cre10.g438350.t1.1		2729755,2730310,2730632,2731345,2731580	2730187,2730462,2731189,2731482,2733776	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr10	2733779	2737224	2733797	2736764	-	LTH2	Cre10.g438400.t1.1		2736680,2736432,2735612,2735182,2733779	2737224,2736563,2736304,2735376,2734904	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr10	2738637	2742124	2739199	2741038	-	LTH1	Cre10.g438450.t1.1		2741832,2741581,2740915,2740531,2738637	2742124,2741712,2741454,2740728,2740309	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox; null-allele mutant was isolated (PMID 29743196)
chr10	2742509	2746209	2743215	2746034	-	FAP264	Cre10.g438500.t1.2		2745988,2745588,2745246,2744508,2744103,2743806,2743468,2742509	2746209,2745716,2745463,2744774,2744177,2743943,2743542,2743302	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome; initially identified by comparative genomics as being present only in organisms having motile (MOT) cilia, but has homologs in land plants; contains leucine-rich repeat
chr10	2746305	2747264	2746460	2746806	+	TATA1	Cre10.g438550.t1.2		2746305	2747264	The TAT translocon translocates proteins with a Twin Arginine Transit peptide through the thylakoid membrane
chr10	2747675	2749676	2747807	2748522	+	Cre10.g438600.t1.2	Cre10.g438600.t1.2		2747675,2748209,2748471	2747858,2748295,2749676	
chr10	2749679	2751792	2749807	2751722	-	ADK2	Cre10.g438650.t1.2		2751653,2751482,2751236,2750892,2750525,2750099,2749679	2751792,2751562,2751319,2751029,2750632,2750230,2749957	Putative adenylate kinase
chr10	2751903	2759645	2752134	2759397	+	Cre10.g438700.t1.1	Cre10.g438700.t1.1		2751903,2752519,2752862,2753142,2753573,2753917,2754247,2754930,2755420,2756219,2756939,2757324,2758236,2759025	2752284,2752650,2752918,2753285,2753629,2754056,2754649,2755073,2755665,2756533,2757064,2757552,2758612,2759645	
chr10	2759795	2761601	2759871	2761442	+	Cre10.g438750.t1.2	Cre10.g438750.t1.2		2759795,2760013,2760161,2760596,2760949,2761264	2759946,2760095,2760304,2760776,2761046,2761601	
chr10	2762025	2769166	2762191	2768184	+	Cre10.g438783.t1.1	Cre10.g438783.t1.1		2762025,2762571,2764072,2764378,2764731,2765024,2765255,2765524,2765792,2767732	2762357,2763865,2764137,2764504,2764845,2765133,2765357,2765695,2767520,2769166	
chr10	2762025	2769166	2762191	2768184	+	Cre10.g438783.t2.1	Cre10.g438783.t2.1		2762025,2762571,2764072,2764378,2764731,2765024,2765255,2765524,2765816,2767732	2762357,2763865,2764137,2764504,2764845,2765133,2765357,2765695,2767520,2769166	
chr10	2769177	2772294	2770414	2772227	-	ROC76	Cre10.g438850.t1.2		2771436,2771270,2771017,2769177	2772294,2771345,2771163,2770831	BZIP transcription factor involved in circadian rhythms; in Matsuo et al. (2008), roc76 (rhythm of chloroplast) circadian rhythm mutant locus maps here
chr10	2772415	2776496	2773240	2775192	+	Cre10.g438883.t1.1	Cre10.g438883.t1.1		2772415,2772938,2774170,2774727	2772754,2773973,2774477,2776496	
chr10	2772415	2776496	2773240	2775192	+	Cre10.g438883.t2.1	Cre10.g438883.t2.1		2772415,2772938,2774170,2774727	2772667,2773973,2774477,2776496	
chr10	2776579	2782954	2777052	2782716	-	Cre10.g438950.t1.1	Cre10.g438950.t1.1		2782635,2782145,2781720,2781026,2779709,2778184,2777500,2776579	2782954,2782543,2781863,2781502,2780872,2779497,2777959,2777351	
chr10	2783115	2788440	2783211	2788232	+	Cre10.g439000.t1.1	Cre10.g439000.t1.1		2783115,2783602,2784034,2784347,2784702,2785097,2785468,2785905,2786148,2787079,2787525,2788070	2783421,2783690,2784175,2784483,2784864,2785231,2785599,2785988,2786773,2787275,2787799,2788440	
chr10	2788510	2789544	2788996	2789507	-	Cre10.g439026.t1.1	Cre10.g439026.t1.1		2788510	2789544	
chr10	2789580	2793664	2790815	2793311	-	MCP7	Cre10.g439050.t1.2		2793160,2792914,2792539,2791996,2791381,2789580	2793664,2793039,2792714,2792184,2791473,2791241	
chr10	2793819	2798556	2793963	2798224	+	CCT1	Cre10.g439100.t1.2		2793819,2794194,2794863,2795290,2795781,2796157,2796451,2796715,2797026,2797342,2797724,2798140	2794107,2794283,2795024,2795490,2795963,2796273,2796530,2796859,2797161,2797499,2797879,2798556	T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) (TCPA); subunit of cytosolic chaperonin complex
chr10	2798559	2801184	2799037	2801069	-	RPT5	Cre10.g439150.t1.2		2800428,2799757,2798559	2801184,2799997,2799442	26S proteasome regulatory complex, base subcomplex, ATPase RPT5 (subunit 6A). ts lethal mutations isolated (PMID 25336509)
chr10	2801286	2803611	2801456	2802720	+	CDD5	Cre10.g439200.t1.2		2801286	2803611	
chr10	2803665	2807236	2803922	2806818	+	Cre10.g439250.t1.2	Cre10.g439250.t1.2		2803665,2805046,2805399,2805849,2806050,2806181,2806394,2806602	2804860,2805219,2805680,2805881,2806098,2806267,2806474,2807236	
chr10	2807239	2812004	2807760	2811883	-	Cre10.g439300.t1.2	Cre10.g439300.t1.2		2810837,2810343,2809995,2809728,2809490,2808394,2807239	2812004,2810636,2810159,2809776,2809622,2809241,2808138	
chr10	2812215	2815236	2812345	2814788	+	Cre10.g439350.t1.2	Cre10.g439350.t1.2		2812215,2812543,2812753,2813373,2813733,2814015,2814349,2814688	2812461,2812650,2812782,2813439,2813812,2814127,2814430,2815236	
chr10	2815306	2819193	2815415	2818643	+	GAT1	Cre10.g439400.t1.1		2815306,2815735,2816011,2816349,2816777,2817181,2817729,2818292	2815664,2815809,2816190,2816457,2816944,2817398,2817980,2819193	
chr10	2819470	2821919	2819559	2820585	+	Cre10.g439450.t1.1	Cre10.g439450.t1.1		2819470,2819712,2819862,2820130	2819614,2819771,2819969,2821919	
chr10	2822215	2825697	2823056	2825184	+	Cre10.g439500.t1.1	Cre10.g439500.t1.1		2822215,2823043,2823633,2824087,2824587	2822945,2823206,2823770,2824278,2825697	
chr10	2827725	2831765	2827910	2831061	+	Cre10.g439550.t1.1	Cre10.g439550.t1.1		2827725,2828601,2829023,2829499,2829886,2830454,2830824	2828288,2828714,2829228,2829588,2830133,2830542,2831765	
chr10	2827725	2831765	2827910	2831061	+	Cre10.g439550.t2.1	Cre10.g439550.t2.1		2827725,2828601,2829119,2829499,2829886,2830454,2830824	2828288,2828714,2829228,2829588,2830133,2830542,2831765	
chr10	2831769	2838234	2832174	2838200	-	Cre10.g439600.t1.1	Cre10.g439600.t1.1		2838035,2837655,2837179,2836840,2836405,2836002,2835723,2835175,2834522,2834017,2833320,2832861,2831769	2838234,2837936,2837367,2836930,2836523,2836162,2835828,2835349,2834894,2834192,2833755,2832957,2832453	
chr10	2838335	2844076	2838550	2842927	+	COG8	Cre10.g439650.t1.2		2838335,2839002,2839644,2840014,2840680,2841007,2841463,2841870,2842291,2842695	2838658,2839160,2839734,2840174,2840785,2841215,2841624,2842110,2842528,2844076	Expressed Protein. Similar to COG8/Dor1p, component of oligomeric golgi complex 8, involved in vesicle tethering and other Golgi functions
chr10	2844165	2849400	2844508	2847480	+	CGL28	Cre10.g439700.t1.2		2844165,2844656,2844790,2845256,2845649,2846102,2846474,2846884,2847154	2844572,2844724,2844882,2845509,2845790,2846226,2846675,2847003,2849400	Conserved in the Green Lineage
chr10	2849495	2864616	2849814	2863858	+	Cre10.g439750.t1.2	Cre10.g439750.t1.2		2849495,2851340,2851692,2852608,2853213,2853766,2854396,2854936,2855405,2855868,2857680,2857975,2858370,2858984,2859476,2859931,2860220,2860741,2861443,2861949,2862362,2862668,2863033,2863435,2863828	2851107,2851495,2852369,2852892,2853464,2853927,2854579,2855189,2855562,2856080,2857786,2858098,2858700,2859171,2859613,2860057,2860398,2861266,2861700,2862122,2862460,2862844,2863092,2863638,2864616	
chr10	2864875	2868572	2865058	2867635	+	Cre10.g439800.t1.2	Cre10.g439800.t1.2		2864875,2867419	2867200,2868572	
chr10	2868876	2872703	2868926	2871922	+	Cre10.g439850.t1.2	Cre10.g439850.t1.2		2868876,2869139,2869369,2869544,2869750,2870234,2870581,2870980	2869025,2869303,2869481,2869658,2870019,2870350,2870679,2872703	
chr10	2872785	2882936	2872874	2881868	+	HSP70G	Cre10.g439900.t1.2		2872785,2873151,2873617,2874304,2875011,2875766,2876215,2876590,2877270,2877724,2878365,2878677,2879130,2879566,2880090,2880502,2880886,2881335	2873028,2873273,2873756,2874411,2875217,2875936,2876298,2876789,2877450,2877945,2878503,2878972,2879246,2879763,2880248,2880633,2881096,2882936	one of 9 genes encoding HSP70-like proteins in Chlamydomonas; it is more similar to HSP110-like proteins, as is HSP70E; probably located in the ER lumen, as it homologue Hyou1, by its C-terminal KGEEL sequence
chr10	2882939	2890384	2884248	2890032	-	Cre10.g439950.t1.1	Cre10.g439950.t1.1		2889405,2889193,2888798,2888100,2886386,2885779,2885370,2885121,2882939	2890384,2889295,2888911,2888653,2887487,2886255,2885596,2885241,2884985	
chr10	2890486	2901654	2890933	2901530	-	OPR120	Cre10.g440000.t1.1		2901503,2896682,2895834,2895078,2894441,2894067,2892603,2891944,2890486	2901654,2901425,2896385,2895403,2894710,2894219,2893733,2892278,2891633	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; necessary for trans-splicing of psaA mRNA; mutated in strain F19
chr10	2901812	2905839	2901854	2905299	+	CSP41A	Cre10.g440050.t1.2		2901812,2902325,2902800,2903222,2903987,2904393,2904975	2902061,2902504,2903029,2903376,2904098,2904504,2905839	Homologous to CSP41b; Arabidopsis homologs form multimeric complexes and bind multiple mRNA and rRNA; similar to NAD-dependent nucleoside-diphosphate-sugar epimerase/dehydratase
chr10	2905842	2907217	2906586	2907180	-	Cre10.g440100.t1.2	Cre10.g440100.t1.2		2907137,2906979,2905842	2907217,2907064,2906901	
chr10	2907315	2909319	2907459	2908422	+	Cre10.g440150.t1.2	Cre10.g440150.t1.2		2907315,2907997,2908271	2907617,2908092,2909319	
chr10	2909322	2918297	2909656	2918068	-	SMC5B	Cre10.g440200.t1.1		2917889,2917728,2917426,2917237,2916853,2916431,2916068,2915687,2915350,2915025,2914699,2914446,2914035,2913719,2913424,2913002,2912694,2912382,2912110,2911729,2911392,2911159,2910800,2910490,2910270,2909901,2909322	2918297,2917782,2917489,2917295,2917054,2916504,2916217,2915791,2915495,2915136,2914839,2914581,2914287,2913853,2913528,2913218,2912821,2912517,2912202,2911889,2911520,2911249,2910942,2910592,2910341,2910068,2909698	Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. This is one of two SMC5 genes near each other on scaffold 10.
chr10	2918439	2921382	2918583	2920511	+	PGM19	Cre10.g440250.t1.1		2918439,2918910,2919393,2919691,2920082	2918697,2919003,2919512,2919917,2921382	
chr10	2921412	2930357	2921602	2930064	-	SMC5A	Cre10.g440300.t1.1		2930010,2929783,2928897,2928581,2928225,2927841,2927501,2927096,2926767,2926398,2925986,2925777,2925285,2925025,2924699,2924351,2923837,2923507,2923189,2922897,2922555,2922178,2921835,2921412	2930357,2929914,2929355,2928718,2928329,2927986,2927651,2927257,2926845,2926638,2926139,2925853,2925417,2925120,2924826,2924486,2924190,2923641,2923293,2923037,2922626,2922309,2922026,2921650	Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. This is one of two SMC5 genes near each other on scaffold 10.
chr10	2930468	2939949	2930693	2938690	+	Cre10.g440350.t1.1	Cre10.g440350.t1.1		2930468,2930823,2931533,2932207,2932813,2933179,2933630,2934156,2934644,2934945,2935278,2937152,2938117,2938454	2930753,2931016,2931728,2932329,2932884,2933334,2933804,2934309,2934723,2935126,2937012,2937955,2938284,2939949	null-allele mutant was isolated (PMID 29743196)
chr10	2939966	2941557	2940417	2941473	-	Cre10.g440400.t1.2	Cre10.g440400.t1.2		2941367,2940897,2939966	2941557,2940998,2940470	
chr10	2941658	2943237	2941716	2942588	+	PSB28	Cre10.g440450.t1.2		2941658,2941903,2942378	2941759,2942084,2943237	Chloroplast precursor; Synechocystis homolog associates with stromal side of RC47 intermediate during repair; can be crosslinked with cyt b559
chr10	2943252	2951677	2943668	2951595	-	Cre10.g440500.t1.1	Cre10.g440500.t1.1		2951498,2951242,2945475,2945194,2944623,2944216,2943252	2951677,2951435,2951152,2945343,2944966,2944520,2944049	
chr10	2943252	2951677	2943668	2951595	-	Cre10.g440500.t2.1	Cre10.g440500.t2.1		2951498,2951242,2945475,2945194,2944623,2944216,2943252	2951677,2951435,2951131,2945343,2944966,2944520,2944049	
chr10	2951812	2972837	2952361	2972606	-	Cre10.g440550.t1.1	Cre10.g440550.t1.1		2971099,2970790,2969640,2968959,2968575,2968288,2967209,2966824,2966433,2965537,2965134,2964849,2964442,2964113,2963597,2963312,2962899,2961770,2961239,2960715,2960245,2958872,2958400,2958138,2957708,2957379,2956898,2956565,2956195,2955758,2955352,2954895,2954499,2953875,2952794,2951812	2972837,2970956,2970366,2969491,2968807,2968428,2968087,2966976,2966609,2966213,2965330,2964971,2964570,2964304,2963761,2963380,2963114,2961883,2961419,2961025,2960526,2960099,2958763,2958256,2957903,2957457,2957105,2956698,2956281,2955903,2955553,2955094,2954697,2954132,2953645,2952595	
chr10	2972938	2976610	2973184	2976037	+	Cre10.g440600.t1.2	Cre10.g440600.t1.2		2972938,2973466,2974026,2974356,2975057,2975371,2975674,2975914	2973378,2973903,2974198,2974876,2975218,2975569,2975795,2976610	
chr10	2976612	2978707	2977278	2978656	-	Cre10.g440650.t1.1	Cre10.g440650.t1.1		2978374,2978153,2977774,2976612	2978707,2978241,2977956,2977540	
chr10	2978922	2981827	2979956	2981746	-	Cre10.g440700.t1.1	Cre10.g440700.t1.1		2981588,2981351,2981058,2980516,2980326,2978922	2981827,2981452,2981154,2980787,2980364,2980203	
chr10	2981923	2987989	2982307	2987661	+	TOP3	Cre10.g440750.t1.2		2981923,2982726,2983143,2983545,2984059,2984813,2985137,2985542,2985872,2986204,2986504,2986839,2987087,2987519	2982415,2982891,2983279,2983730,2984646,2984929,2985289,2985716,2985960,2986263,2986676,2986919,2987314,2987989	DNA gyrase subunit B; similar to Arabidopsis thaliana, ATF21E1
chr10	2987992	2991267	2988185	2991073	-	Cre10.g440800.t1.1	Cre10.g440800.t1.1		2991050,2988634,2988340,2987992	2991267,2990860,2988399,2988221	
chr10	2991332	2995927	2992085	2995635	-	GPX4	Cre10.g440850.t1.1		2995540,2995096,2994850,2993931,2993648,2993312,2993013,2992913,2992845,2992642,2992398,2991332	2995927,2995160,2994950,2994635,2993761,2993423,2993091,2992937,2992857,2992711,2992521,2992229	Possibly chloroplastic (prediction).
chr10	2991332	2995927	2992085	2995635	-	GPX4	Cre10.g440850.t2.1		2995540,2995096,2994850,2993931,2993648,2993312,2993024,2992845,2992642,2992398,2991332	2995927,2995160,2994950,2994635,2993761,2993423,2993091,2992857,2992711,2992521,2992229	Possibly chloroplastic (prediction).
chr10	2996048	2997689	2996400	2997421	+	RRP43	Cre10.g440900.t1.2		2996048	2997689	putative PH domain-containing exosome subunit of the Rrp42 group
chr10	2997692	3005361	2998009	3005102	-	FAP192	Cre10.g440950.t1.2		3005051,3004690,3004261,3003943,3003671,3002835,3002341,3001853,3001451,3000644,3000313,2999831,2999305,2998732,2998311,2997692	3005361,3004803,3004455,3004083,3003770,3003480,3002551,3002148,3001687,3001284,3000469,3000047,2999548,2999024,2998505,2998105	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr10	3005474	3009315	3005701	3008846	+	Cre10.g441000.t1.2	Cre10.g441000.t1.2		3005474,3005821,3006040,3006500,3006980,3007289,3007689,3007973,3008354,3008633	3005734,3005866,3006257,3006761,3007116,3007492,3007838,3008152,3008500,3009315	
chr10	3014930	3018648	3017007	3018557	-	Cre10.g441050.t1.2	Cre10.g441050.t1.2		3018350,3018246,3018100,3017950,3017771,3017521,3017351,3014930	3018648,3018275,3018140,3017994,3017825,3017631,3017379,3017200	
chr10	3019010	3023095	3019319	3023053	-	PIGT	Cre10.g441100.t1.2		3022975,3022834,3022585,3022407,3021770,3021480,3020428,3019913,3019010	3023095,3022887,3022713,3022457,3022002,3021619,3021344,3020236,3019694	GPI (glycosyl phosphatidyl inositol) transamidase (here: GPI16/PIG-T subunit / sub-complex of the GPI transamidase); part of a multiprotein complex; GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins; essential N-glycosylated transmembrane glycoprotein
chr10	3023266	3027727	3023358	3027518	+	Cre10.g441150.t1.1	Cre10.g441150.t1.1		3023266,3023880,3024246,3027139,3027392	3023405,3024105,3026969,3027228,3027727	
chr10	3023506	3027727	3024051	3027518	+	Cre10.g441150.t2.1	Cre10.g441150.t2.1		3023506,3023880,3024246,3027139,3027392	3023608,3024105,3026969,3027228,3027727	
chr10	3027729	3033925	3028756	3033711	-	LAL3	Cre10.g441200.t1.2		3033630,3033195,3033008,3032736,3031275,3030810,3029949,3029383,3029125,3027729	3033925,3033533,3033040,3032846,3032621,3031004,3030408,3029711,3029196,3028846	contains a La domain and DM15 domains in its C-terminal half; similar to At5g21160, a La-like protein (PMID: 17459889)
chr10	3034664	3037626	3034927	3037005	+	Cre10.g441250.t1.2	Cre10.g441250.t1.2		3034664,3035020,3035397,3035652,3035977,3036234,3036470,3036654,3036842	3034936,3035220,3035486,3035774,3036063,3036338,3036562,3036724,3037626	contains a single domain, TM231 of unknown function
chr10	3037628	3044395	3038170	3043966	-	Cre10.g441300.t1.1	Cre10.g441300.t1.1		3044156,3043935,3043644,3043295,3042919,3040757,3040570,3040258,3039931,3039585,3037628	3044395,3043971,3043835,3043555,3043112,3042834,3040639,3040447,3040089,3039807,3039458	
chr10	3044556	3045517	3044974	3045152	+	Cre10.g441326.t1.1	Cre10.g441326.t1.1		3044556,3044692,3044927	3044618,3044814,3045517	
chr10	3045710	3051020	3046216	3050843	-	Cre10.g441350.t1.1	Cre10.g441350.t1.1		3050738,3050596,3050284,3049599,3049082,3048393,3047787,3047338,3047003,3046412,3045710	3051020,3050658,3050398,3050216,3049482,3048919,3048222,3047547,3047173,3046882,3046300	
chr10	3045710	3051020	3046216	3050843	-	Cre10.g441350.t2.1	Cre10.g441350.t2.1		3050738,3050596,3050284,3049599,3049082,3048393,3047787,3047338,3047003,3046412,3045710	3051020,3050658,3050398,3050216,3049482,3048919,3048054,3047547,3047173,3046882,3046300	
chr10	3051210	3054279	3051941	3054190	-	NOP58	Cre10.g441400.t1.2		3054112,3053988,3053817,3053634,3052586,3052284,3051210	3054279,3054029,3053907,3053745,3053429,3052457,3052127	Structural Component of C/D snoRNPs. Required for pre-Ribosomal RNA processing and snoRNA guided pre-rRNA methylation; shows sequence similarities to NOP56
chr10	3054658	3060665	3054992	3060526	-	Cre10.g441450.t1.2	Cre10.g441450.t1.2		3060421,3060226,3059906,3059482,3059108,3058621,3058390,3057885,3057459,3057108,3056620,3056284,3055899,3054658	3060665,3060300,3059986,3059697,3059242,3058788,3058458,3058048,3057647,3057243,3056856,3056441,3056071,3055714	
chr10	3060806	3064357	3060863	3063722	+	Cre10.g441500.t1.2	Cre10.g441500.t1.2		3060806,3061317,3061871,3062254,3062705,3063047,3063533	3061029,3061482,3061944,3062348,3062791,3063160,3064357	
chr10	3064360	3070115	3064568	3069705	-	MAM3B	Cre10.g441550.t1.1		3069675,3069419,3069118,3068761,3068493,3068253,3067857,3067485,3067131,3064782,3064360	3070115,3069534,3069196,3068834,3068555,3068339,3067983,3067585,3067248,3067013,3064646	contains a DUF21 transmembrane domain of unknown function usually associated with CBS domains (found in Hemolysins and Mg2+/CO2 transporters CorB CorC); similarity to many Arabidopsis proteins and to yeast Mam3p, involved in mitochondrial biogenesis
chr10	3070590	3075375	3071065	3074686	-	OPR48	Cre10.g441600.t1.1		3075055,3074086,3073830,3072792,3072462,3071993,3071652,3070590	3075375,3074925,3073916,3073616,3072627,3072227,3071756,3071423	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 129 codons at 5'-end: MAACLRQIRSIGEALLPLEAGVLQVSAARTTSCREALEGTLGLARGQSQVGTGASAICVGTSREAQPSSDSGACSTSYGAAQLTGTAWRSSVAREPCTHTAQAFPLPRDWILQGRGRTWSAEASGRPHA
chr10	3075526	3108634	3075589	3107948	+	Cre10.g441650.t1.1	Cre10.g441650.t1.1		3075526,3075897,3076159,3076700,3077921,3078971,3079586,3080211,3080899,3082754,3083081,3083856,3084312,3084573,3085008,3085729,3085997,3086307,3086619,3087645,3087950,3088277,3088770,3089787,3090112,3090600,3091095,3091418,3091999,3092259,3092513,3092807,3093864,3094289,3094711,3095007,3097598,3097797,3098069,3098492,3098950,3100347,3100694,3100957,3101342,3101710,3101968,3104221,3104611,3104980,3105341,3105768,3106017,3106495,3106831,3107261	3075761,3076081,3076549,3077762,3078782,3079444,3080043,3080783,3082627,3082873,3083770,3084204,3084439,3084846,3085559,3085889,3086158,3086510,3087480,3087816,3088184,3088658,3089091,3090017,3090365,3090878,3091297,3091873,3092148,3092416,3092681,3093763,3094194,3094636,3094895,3097436,3097663,3097952,3098354,3098838,3100203,3100569,3100832,3101176,3101494,3101832,3104046,3104469,3104868,3105120,3105601,3105869,3106379,3106708,3107108,3108634	
chr10	3108770	3118105	3109716	3117568	-	Cre10.g441700.t1.1	Cre10.g441700.t1.1		3117837,3117559,3116615,3116226,3115788,3115433,3114896,3114575,3114258,3113511,3113244,3112781,3112311,3111772,3110674,3110054,3108770	3118105,3117727,3117284,3116430,3116100,3115561,3115279,3114763,3114419,3114147,3113388,3113122,3112598,3112172,3111655,3110525,3109926	
chr10	3120881	3123676	3121612	3123619	-	Cre10.g441750.t1.2	Cre10.g441750.t1.2		3123560,3123408,3122899,3122410,3122167,3121840,3120881	3123676,3123479,3122978,3122687,3122269,3122033,3121693	
chr10	3123806	3128397	3124335	3127847	+	Cre10.g441800.t1.1	Cre10.g441800.t1.1		3123806,3124091,3124240,3124582,3124821,3125130,3125727,3126058,3126559,3126993,3127412	3123985,3124139,3124358,3124695,3125001,3125600,3125909,3126420,3126852,3127283,3128397	
chr10	3128400	3151425	3128956	3151208	-	Cre10.g441850.t1.1	Cre10.g441850.t1.1		3150647,3150451,3150189,3149931,3149672,3149439,3149132,3148854,3148710,3148500,3148286,3147930,3147695,3147403,3146984,3146540,3146244,3145960,3145638,3145285,3144664,3144334,3144080,3143792,3143524,3143375,3143166,3142240,3141810,3141472,3141153,3140855,3140450,3139633,3139410,3139031,3138845,3138355,3138001,3137567,3137327,3136843,3136531,3135981,3135380,3135081,3134627,3134373,3134095,3133723,3133358,3132852,3130099,3129393,3128400	3151425,3150566,3150371,3150113,3149854,3149573,3149346,3149010,3148776,3148601,3148417,3148202,3147830,3147610,3147263,3146908,3146412,3146120,3145829,3145539,3145188,3144557,3144227,3143947,3143688,3143428,3143273,3143076,3142142,3141684,3141367,3141056,3140631,3140321,3139552,3139308,3138938,3138729,3138219,3137902,3137446,3137235,3136727,3136382,3135854,3135296,3134995,3134525,3134270,3133990,3133636,3133247,3132705,3129974,3129271	
chr10	3128400	3151425	3128956	3151208	-	Cre10.g441850.t2.1	Cre10.g441850.t2.1		3150647,3150451,3150189,3149931,3149672,3149439,3149132,3148854,3148710,3148500,3148286,3147930,3147695,3147403,3146984,3146540,3146244,3145960,3145638,3145285,3144664,3144334,3144080,3143792,3143524,3143375,3143166,3142240,3141810,3141472,3141153,3140855,3140450,3139633,3139410,3139031,3138845,3138355,3138001,3137567,3137327,3136843,3136531,3135981,3135380,3135081,3134627,3134373,3134095,3133723,3133358,3132852,3130099,3129393,3128400	3151425,3150566,3150371,3150113,3149854,3149573,3149346,3149010,3148776,3148601,3148417,3148202,3147830,3147610,3147263,3146908,3146412,3146120,3145829,3145497,3145188,3144557,3144227,3143947,3143688,3143428,3143273,3143076,3142142,3141684,3141367,3141056,3140631,3140321,3139552,3139308,3138938,3138729,3138219,3137902,3137446,3137235,3136727,3136382,3135854,3135296,3134995,3134525,3134270,3133990,3133636,3133247,3132705,3129974,3129271	
chr10	3151526	3153527	3151825	3153506	+	FAP145	Cre10.g441900.t1.1		3151526,3152229,3152695,3152921,3153272	3151845,3152513,3152797,3153073,3153527	Flagellar Associated Protein weakly similar to Translin-Associated Factor X (Tsnax) Interacting Protein 1 Found in the flagellar proteome
chr10	3153530	3155355	3154028	3155218	-	LSM2	Cre10.g441950.t1.2		3155176,3154961,3154363,3153530	3155355,3155080,3154413,3154097	gi 15704973 gb BI729278.1 BI729278 like Sm-D1 protein, sm protein, snRNA associated
chr10	3155496	3159897	3155586	3159182	+	Cre10.g442000.t1.2	Cre10.g442000.t1.2		3155496,3155843,3156091,3156379,3156637,3157225,3157643,3158480,3158794	3155753,3155910,3156239,3156443,3156809,3157451,3158260,3158640,3159897	
chr10	3159903	3160875	3160412	3160653	-	Cre10.g442041.t1.2	Cre10.g442041.t1.2		3159903	3160875	
chr10	3161016	3165571	3161391	3165366	+	Cre10.g442050.t1.1	Cre10.g442050.t1.1		3161016,3161558,3161817,3162740,3163063	3161488,3161701,3162622,3162890,3165571	
chr10	3167726	3170967	3167846	3170739	+	Cre10.g442150.t1.1	Cre10.g442150.t1.1		3167726,3169113,3169364,3170051,3170312,3170673	3168980,3169250,3169821,3170141,3170497,3170967	
chr10	3171016	3173346	3171046	3173115	+	ERG6	Cre10.g442200.t1.2		3171016,3171507,3172024,3172431	3171231,3171814,3172244,3173346	3-beta hydroxysteroid dehydrogenase/isomerase family
chr10	3173396	3178676	3173661	3178370	+	Cre10.g442250.t1.2	Cre10.g442250.t1.2		3173396,3173997,3174288,3174646,3174964,3176547,3176862,3177354	3173877,3174110,3174436,3174706,3176362,3176690,3177122,3178676	
chr10	3178680	3182954	3179527	3182324	-	Cre10.g442300.t1.2	Cre10.g442300.t1.2		3182635,3182193,3181857,3181692,3181517,3178680	3182954,3182381,3181991,3181733,3181550,3181387	
chr10	3178680	3182925	3179527	3182324	-	Cre10.g442300.t2.1	Cre10.g442300.t2.1		3182635,3182193,3181857,3181692,3181517,3178680	3182925,3182441,3181991,3181733,3181550,3181387	
chr10	3183010	3185525	3183420	3185274	-	Cre10.g442350.t1.1	Cre10.g442350.t1.1		3185217,3184721,3184552,3184095,3183010	3185525,3184876,3184605,3184406,3183891	
chr10	3185666	3187505	3185797	3187069	+	Cre10.g442400.t1.2	Cre10.g442400.t1.2		3185666,3186306,3186816	3186022,3186529,3187505	
chr10	3187746	3189757	3187836	3189276	+	Cre10.g442450.t1.2	Cre10.g442450.t1.2		3187746,3188209,3188658	3188094,3188469,3189757	
chr10	3190483	3193588	3191941	3193000	-	Cre10.g442500.t1.2	Cre10.g442500.t1.2		3192810,3190483	3193588,3192693	
chr10	3193729	3196720	3193940	3194999	+	Cre10.g442550.t1.2	Cre10.g442550.t1.2		3193729,3194247	3194130,3196720	
chr10	3196853	3202788	3199489	3202500	-	XUV5	Cre10.g442600.t1.2		3202413,3202263,3201979,3201225,3200919,3200461,3200254,3199755,3196853	3202788,3202335,3202134,3201795,3201103,3200763,3200313,3200087,3199620	null-allele mutant was isolated (PMID 29743196)
chr10	3196853	3202788	3199489	3202500	-	XUV5	Cre10.g442600.t2.1		3202413,3202263,3201979,3201225,3200919,3200461,3200254,3199755,3196853	3202788,3202335,3202134,3201795,3201103,3200763,3200313,3200063,3199620	null-allele mutant was isolated (PMID 29743196)
chr10	3203161	3207958	3203345	3207872	-	Cre10.g442650.t1.2	Cre10.g442650.t1.2		3207848,3207714,3207439,3207062,3206310,3205716,3205055,3204263,3203161	3207958,3207761,3207576,3207334,3206871,3205807,3205561,3204784,3203657	
chr10	3212829	3217370	3213107	3216462	+	Cre10.g442700.t1.2	Cre10.g442700.t1.2		3212829,3213332,3213727,3214294,3214540,3214758,3215165,3215749,3216182	3213266,3213532,3213837,3214417,3214596,3214867,3215340,3215928,3217370	ChromoDB RUVBL342
chr10	3217429	3219775	3217544	3219379	+	Cre10.g442750.t1.2	Cre10.g442750.t1.2		3217429,3217658,3218082,3218352,3218579,3218836,3218994,3219237	3217583,3217731,3218142,3218397,3218659,3218870,3219088,3219775	
chr10	3219889	3224940	3220250	3223683	+	XUV6	Cre10.g442800.t1.1		3219889,3220481,3220800,3221122,3221881,3222285,3222731,3222969,3223552	3220394,3220553,3220961,3221695,3222065,3222587,3222790,3223316,3224940	
chr10	3224988	3233668	3225277	3233264	-	TOP1A	Cre10.g442850.t1.1		3233467,3232847,3232120,3231843,3231555,3231032,3230558,3230020,3229608,3229148,3228767,3228213,3227463,3226886,3226543,3226030,3224988	3233668,3233298,3232455,3231941,3231666,3231333,3230717,3230146,3229788,3229366,3228919,3228360,3227957,3227268,3226719,3226206,3225844	contains HMG-box
chr10	3233769	3238970	3233801	3238529	+	Cre10.g442900.t1.1	Cre10.g442900.t1.1		3233769,3234101,3235046,3235276,3237502,3238421	3234006,3234819,3235132,3237426,3237603,3238970	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr10	3239019	3242680	3239100	3241850	+	Cre10.g442950.t1.2	Cre10.g442950.t1.2		3239019,3239565,3239913,3240157,3240584,3240941,3241419,3241742	3239141,3239703,3239946,3240311,3240776,3241191,3241529,3242680	
chr10	3242683	3253398	3243371	3253102	-	ATM3	Cre10.g443000.t1.2		3253042,3252801,3252414,3251627,3251305,3250888,3250477,3250006,3249775,3249491,3249041,3248404,3247985,3247507,3246965,3246397,3246080,3245238,3242683	3253398,3252949,3252531,3252097,3251445,3251013,3250593,3250132,3249839,3249541,3249196,3248590,3248118,3247614,3247165,3246498,3246179,3245844,3244983	Related to the Chlamydomonas Cds1 protein, a mitochondrial half-size ABC transporter involved in cadmium detoxification [PMID: 11267764, PMID: 15710683], and to the S. pombe HMT1, a vacuolar phytochelatin-cadmium transporter.
chr10	3253453	3256956	3255101	3256888	-	PFH3	Cre10.g443050.t1.2		3256785,3256613,3256465,3256010,3255548,3253453	3256956,3256686,3256516,3256271,3255852,3255382	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_1526; contains C-terminal ShK domain
chr10	3257453	3261028	3258029	3260540	-	Cre10.g443100.t1.2	Cre10.g443100.t1.2		3259940,3259585,3259353,3258866,3258406,3257453	3261028,3259722,3259451,3259025,3258527,3258173	
chr10	3261189	3267136	3261767	3266768	+	Cre10.g443150.t1.2	Cre10.g443150.t1.2		3261189,3261645,3265641,3266258	3261432,3265529,3266063,3267136	
chr10	3269501	3275248	3270060	3275114	-	CCT3	Cre10.g443250.t1.2		3275027,3274812,3274681,3274323,3273092,3272666,3271764,3271449,3271255,3270853,3270495,3269501	3275248,3274952,3274750,3274537,3273221,3272810,3271973,3271547,3271312,3271015,3270631,3270273	T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma) (TCPC); subunit of cytosolic chaperonin complex. Transcript upregulated during flagellar regeneration; PMID: 15738400
chr10	3275379	3280410	3275459	3279747	+	CNK5	Cre10.g443300.t1.2		3275379,3275569,3275735,3275920,3276091,3276329,3276763,3277104,3277557,3277866,3278615,3279445	3275491,3275656,3275802,3275970,3276187,3276594,3276919,3277241,3277673,3278364,3279238,3280410	NimA related kinase homolog 5 [gi:34334399, PMID: 15068267]; null-allele mutant was isolated (PMID 29743196)
chr10	3280469	3290690	3280627	3288832	+	Cre10.g443350.t1.2	Cre10.g443350.t1.2		3280469,3281286,3281620,3281980,3282289,3282686,3282991,3283296,3283485,3283784,3284281,3284720,3285134,3285836,3286258,3286687,3287265,3287627,3287938,3288322,3288688	3281056,3281363,3281807,3282067,3282402,3282816,3283105,3283389,3283558,3283876,3284445,3284874,3285556,3286031,3286428,3287016,3287381,3287751,3288106,3288429,3290690	
chr10	3291269	3299438	3291761	3297250	+	Cre10.g443400.t1.1	Cre10.g443400.t1.1		3291269,3291984,3292206,3294994,3295755,3296575,3297070	3291887,3292046,3294795,3295577,3296346,3296909,3299438	
chr10	3299699	3302100	3300332	3302042	+	Cre10.g443450.t1.2	Cre10.g443450.t1.2		3299699,3300576,3301143,3301400,3301696,3301817,3302042	3300392,3300742,3301245,3301440,3301739,3301831,3302100	
chr10	3302103	3305068	3303174	3304765	-	PCD3	Cre10.g443500.t1.2		3304375,3303927,3302103	3305068,3304070,3303513	
chr10	3305759	3315889	3306014	3314769	+	Cre10.g443550.t1.2	Cre10.g443550.t1.2		3305759,3306844,3307602,3308056,3308585,3309037,3309341,3310076,3310431,3310933,3311394,3311806,3312325,3312762,3313292,3313662,3314103,3314654	3306395,3306938,3307766,3308128,3308833,3309203,3309644,3310174,3310571,3311154,3311525,3312042,3312438,3312908,3313471,3313775,3314386,3315889	null-allele mutant was isolated (PMID 29743196)
chr10	3316099	3322173	3316391	3320425	+	Cre10.g443600.t1.1	Cre10.g443600.t1.1		3316099,3316530,3316775,3316973,3317224,3317708,3317963,3318724	3316431,3316594,3316849,3317083,3317416,3317762,3318419,3322173	
chr10	3322299	3326420	3322396	3326039	+	Cre10.g443650.t1.1	Cre10.g443650.t1.1		3322299,3322723,3323142,3323940,3324252,3324931,3325359,3325737	3322433,3322932,3323649,3324081,3324368,3325041,3325449,3326420	
chr10	3326469	3336890	3326512	3335976	+	Cre10.g443700.t1.1	Cre10.g443700.t1.1		3326469,3326982,3328769,3329355,3330711,3331370,3331862,3332639,3333150,3333678,3334740,3335186	3326678,3328342,3328925,3330332,3331041,3331571,3332110,3332910,3333363,3334280,3334873,3336890	
chr10	3336896	3338619	3337829	3338506	-	Cre10.g443750.t1.2	Cre10.g443750.t1.2		3338378,3338100,3336896	3338619,3338262,3337901	
chr10	3338703	3343358	3339302	3343118	-	Cre10.g443801.t1.1	Cre10.g443801.t1.1		3343054,3342350,3341976,3341597,3340800,3340330,3339893,3338703	3343358,3342690,3342029,3341742,3340881,3340479,3340048,3339545	
chr10	3343469	3349282	3343671	3348935	+	Cre10.g443850.t1.1	Cre10.g443850.t1.1		3343469,3344517,3344752,3345056,3345387,3345879,3346133,3346450,3346812,3347202,3347726,3348380,3348807	3344101,3344584,3344835,3345145,3345553,3345965,3346235,3346529,3346953,3347337,3347854,3348559,3349282	
chr10	3349329	3357630	3349483	3357035	+	BOR1	Cre10.g443900.t1.1		3349329,3349819,3350071,3350458,3351003,3351453,3351760,3352836,3353493,3354127,3355304,3355835,3356386	3349602,3349901,3350129,3350616,3351116,3351510,3351881,3353109,3353641,3355140,3355489,3355947,3357630	Homologous to Arabidopsis borate transporter, AtBor1. Contains HCO3- transporter family. (pfam00955). This family contains Band 3 anion exchange proteins that exchange Cl-/HCO3-. This family also includes cotransporters of Na+/HCO3-
chr10	3357640	3362478	3360037	3362429	-	Cre10.g443950.t1.1	Cre10.g443950.t1.1		3362170,3361789,3360901,3357640	3362478,3362024,3361335,3360631	
chr10	3362599	3365850	3362665	3364517	+	Cre10.g444000.t1.2	Cre10.g444000.t1.2		3362599,3363231,3363829,3364429	3363044,3363369,3364131,3365850	
chr10	3369573	3376722	3370537	3376531	-	Cre10.g444044.t1.1	Cre10.g444044.t1.1		3376231,3374505,3370671,3369573	3376722,3376089,3374021,3370587	
chr10	3377843	3379409	3377883	3378796	+	Cre10.g444086.t1.2	Cre10.g444086.t1.2		3377843,3378118,3378468,3378618,3378796	3377922,3378180,3378518,3378729,3379409	
chr10	3379417	3380442	3379663	3379829	-	Cre10.g444094.t1.1	Cre10.g444094.t1.1		3380118,3379417	3380442,3379998	
chr10	3380497	3383262	3380924	3383218	-	Cre10.g444100.t1.1	Cre10.g444100.t1.1		3382959,3382578,3381690,3380497	3383262,3382813,3382124,3381536	
chr10	3383383	3386424	3383452	3385178	+	Cre10.g444150.t1.1	Cre10.g444150.t1.1		3383383,3384041,3384518,3385090	3383831,3384179,3384820,3386424	null-allele mutant was isolated (PMID 29743196)
chr10	3386467	3388212	3386617	3387936	-	Cre10.g444183.t1.1	Cre10.g444183.t1.1		3388160,3387902,3387654,3387227,3386467	3388212,3387953,3387710,3387324,3386983	
chr10	3388287	3391922	3388303	3390568	-	Cre10.g444216.t1.1	Cre10.g444216.t1.1		3391531,3390826,3390511,3390136,3389846,3389609,3389382,3388982,3388605,3388287	3391922,3390997,3390696,3390232,3389924,3389700,3389455,3389056,3388708,3388325	
chr10	3392093	3398584	3392626	3398182	+	Cre10.g444250.t1.1	Cre10.g444250.t1.1		3392093,3393030,3393299,3393660,3394033,3394426,3394655,3394892,3395166,3395528,3395943,3397738	3392824,3393102,3393417,3393731,3394115,3394459,3394727,3394959,3395282,3395770,3397490,3398584	
chr10	3398587	3400792	3399982	3400553	-	IQA4	Cre10.g444300.t1.2		3398587	3400792	contains a dekaoctopeptide repeat RADASIQAAQQRAAIYRE and a highly charged C-terminus
chr10	3400893	3404424	3402476	3402973	+	Cre10.g444317.t1.2	Cre10.g444317.t1.2		3400893,3401839,3402414,3402862	3401624,3402311,3402743,3404424	
chr10	3404427	3409002	3405593	3408746	-	Cre10.g444400.t1.1	Cre10.g444400.t1.1		3408500,3407936,3407581,3407216,3406850,3406459,3404427	3409002,3408318,3407740,3407386,3406978,3406575,3406277	
chr10	3409055	3416522	3409387	3416331	-	SSA17	Cre10.g444450.t1.1		3416249,3416113,3415866,3415546,3415307,3414919,3413537,3413292,3413072,3412785,3412607,3412341,3412161,3411959,3411762,3411391,3410510,3410237,3410026,3409764,3409055	3416522,3416162,3416011,3415693,3415357,3415193,3414797,3413378,3413146,3412901,3412675,3412487,3412208,3412030,3411854,3411607,3411289,3410418,3410106,3409889,3409630	Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA); null-allele mutant was isolated (PMID 29743196)
chr10	3416577	3418886	3417327	3418857	-	Cre10.g444500.t1.2	Cre10.g444500.t1.2		3418816,3418612,3418406,3418033,3417784,3416577	3418886,3418678,3418467,3418180,3417834,3417405	
chr10	3419003	3426047	3419194	3425551	+	SPP1A	Cre10.g444550.t1.2		3419003,3419669,3420054,3420544,3420858,3421166,3421596,3422093,3422516,3422928,3423325,3423819,3424042,3424404,3424741,3425138	3419276,3419823,3420212,3420651,3420919,3421314,3421735,3422273,3422701,3422994,3423495,3423908,3424114,3424544,3424876,3426047	SppA, protease IV, signal peptide peptidase, serine endopeptidase of S49 family (ClpP clan); contains 2 functional S49 domains; probably associated with thylakoid membrane and involved in cleavage of membrane proteins or signal peptide; called SPPA1-1 in Sokolenko, 2005, Physiol. Plantarum 123:391; null-allele mutant was isolated (PMID 29743196)
chr10	3426183	3433546	3426417	3432610	+	Cre10.g444600.t1.1	Cre10.g444600.t1.1		3426183,3426694,3427144,3427567,3428111	3426542,3426745,3427278,3427966,3433546	
chr10	3434307	3443992	3434588	3443770	-	Cre10.g444650.t1.1	Cre10.g444650.t1.1		3442133,3441949,3441685,3440347,3440032,3439461,3438672,3436495,3434307	3443992,3441996,3441777,3441474,3440197,3439791,3439231,3438501,3436244	
chr10	3445284	3453070	3446150	3452942	-	SBE3	Cre10.g444700.t1.1		3452881,3452406,3452127,3451920,3451507,3451187,3450763,3450279,3449980,3449526,3449173,3448739,3448182,3447688,3447331,3446904,3446604,3445284	3453070,3452815,3452202,3452002,3451637,3451293,3450850,3450474,3450051,3449667,3449307,3448886,3448313,3447793,3447445,3447097,3446768,3446396	catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position
chr10	3453977	3455632	3454370	3455125	-	Cre10.g444726.t1.1	Cre10.g444726.t1.1		3455044,3453977	3455632,3454511	
chr10	3456123	3459632	3456822	3459340	-	Cre10.g444750.t1.1	Cre10.g444750.t1.1		3459220,3459095,3458921,3458791,3458411,3458302,3458024,3457849,3457640,3457468,3457280,3457055,3456123	3459632,3459107,3458946,3458862,3458557,3458340,3458135,3457917,3457679,3457505,3457356,3457120,3456897	
chr10	3460143	3463024	3460232	3462400	+	CGL63	Cre10.g444800.t1.2		3460143,3460539,3461023,3461284,3461566,3461713,3461987,3462316	3460466,3460605,3461100,3461420,3461618,3461777,3462048,3463024	
chr10	3463073	3480036	3463204	3479160	+	CAV7	Cre10.g444850.t1.1		3463073,3463429,3463762,3465376,3465615,3465910,3466129,3466425,3466752,3467095,3468939,3469176,3469488,3470009,3470222,3470502,3471053,3473987,3474365,3474700,3475076,3475380,3475661,3475968,3476281,3476558,3477080,3477682,3477938,3478346	3463326,3463622,3465222,3465479,3465758,3466008,3466230,3466610,3466916,3468815,3469029,3469346,3469810,3470124,3470265,3470901,3473853,3474241,3474568,3474962,3475194,3475512,3475822,3476145,3476361,3476899,3477465,3477785,3478169,3480036	Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582)
chr10	3481693	3485244	3481975	3484604	+	MFT4	Cre10.g444900.t1.1		3481693,3482154,3482352,3483057,3483483,3483743,3484087,3484508	3482010,3482273,3482864,3483279,3483627,3483931,3484373,3485244	putative MATE efflux family protein, Na+-driven multidrug efflux pump
chr10	3485249	3487172	3485546	3487067	-	Cre10.g444950.t1.2	Cre10.g444950.t1.2		3487052,3486948,3486100,3485829,3485249	3487172,3486990,3486872,3485906,3485687	
chr10	3489763	3495854	3490029	3495022	+	SLT2	Cre10.g445000.t1.2		3489763,3490252,3490574,3490859,3491165,3491314,3491791,3492284,3492564,3492770,3492999,3493366,3494008,3494190,3494399,3494773	3490104,3490411,3490708,3491039,3491190,3491612,3492076,3492375,3492618,3492867,3493250,3493807,3494019,3494261,3494616,3495854	SAC1-like transporter 2, putative sodium/sulfate co-transporter, transcript is up-regulated during sulfur-deprivation; related to the SAC1 protein which regulates sulfur-deficiency responses [PMID: 16307308]
chr10	3489901	3495854	3490029	3495022	+	SLT2	Cre10.g445000.t2.1		3489901,3490252,3490574,3490859,3491165,3491314,3491791,3492284,3492564,3492770,3492999,3493366,3494008,3494190,3494399,3494773	3490104,3490411,3490708,3491039,3491190,3491612,3492076,3492375,3492618,3492867,3493250,3493807,3494019,3494261,3494616,3495854	SAC1-like transporter 2, putative sodium/sulfate co-transporter, transcript is up-regulated during sulfur-deprivation; related to the SAC1 protein which regulates sulfur-deficiency responses [PMID: 16307308]
chr10	3495903	3502674	3496084	3501536	+	SLT3	Cre10.g445050.t1.2		3495903,3496155,3496406,3496969,3497291,3497556,3497976,3498227,3498481,3498731,3499144,3499437,3499679,3500102,3500653,3500858,3501036	3496093,3496209,3496510,3497103,3497445,3497818,3498028,3498285,3498579,3498899,3499287,3499534,3499930,3500504,3500691,3500941,3502674	SAC1-like transporter 3, putative sodium/sulfate co-transporter, transcript is down-regulated during sulfur-deprivation; related to the SAC1 protein which regulates sulfur-deficiency responses [PMID: 16307308]
chr10	3503277	3506724	3503892	3506628	-	CGL50	Cre10.g445100.t1.1		3506607,3506192,3505787,3505446,3504940,3504175,3503277	3506724,3506407,3505897,3505529,3505038,3504213,3503964	
chr10	3506833	3513903	3507303	3512274	+	EXN12	Cre10.g445150.t1.1		3506833,3507132,3507693,3508092,3508382,3508886,3509265,3509779,3510006,3510483,3511265,3511593,3512064	3507006,3507528,3507788,3508176,3508584,3508965,3509389,3509864,3510178,3511050,3511442,3511831,3513903	
chr10	3521163	3523034	3521256	3522666	+	Cre10.g445151.t1.2	Cre10.g445151.t1.2		3521163,3521462,3521878,3522666	3521382,3521695,3522022,3523034	
chr10	3517697	3519782	3518815	3519555	-	Cre10.g445153.t1.1	Cre10.g445153.t1.1		3519536,3517697	3519782,3519144	
chr10	3527863	3531234	3527938	3528281	+	Cre10.g445177.t1.1	Cre10.g445177.t1.1		3527863,3528096	3527984,3531234	
chr10	3527863	3530641	3527938	3528281	+	Cre10.g445177.t2.1	Cre10.g445177.t2.1		3527863,3528096	3527984,3530641	
chr10	3531413	3534304	3532022	3532332	+	Cre10.g445201.t1.1	Cre10.g445201.t1.1		3531413,3532019	3531483,3534304	
chr10	3531983	3534304	3532022	3532332	+	Cre10.g445201.t2.1	Cre10.g445201.t2.1		3531983	3534304	
chr10	3531983	3535064	3532022	3532332	+	Cre10.g445201.t3.1	Cre10.g445201.t3.1		3531983	3535064	
chr10	3541197	3549642	3541410	3549116	-	Cre10.g445226.t1.1	Cre10.g445226.t1.1		3549109,3548399,3546882,3545747,3542796,3541197	3549642,3548919,3548099,3546638,3545327,3542489	
chr10	3551317	3552542	3551444	3551922	+	Cre10.g445251.t1.1	Cre10.g445251.t1.1		3551317	3552542	
chr10	3552997	3558138	3553646	3555565	+	Cre10.g445275.t1.1	Cre10.g445275.t1.1		3552997,3553578,3554502,3555411	3553461,3554001,3555219,3558138	
chr10	3558541	3559936	3558655	3559435	-	Cre10.g445299.t1.1	Cre10.g445299.t1.1		3559428,3558968,3558541	3559936,3559238,3558698	
chr10	3563151	3564336	3563952	3564289	-	Cre10.g445323.t1.1	Cre10.g445323.t1.1		3563151	3564336	
chr10	3564587	3567678	3564858	3565884	+	Cre10.g445347.t1.1	Cre10.g445347.t1.1		3564587,3565730	3565538,3567678	
chr10	3580981	3582446	3581335	3581703	-	Cre10.g445371.t1.1	Cre10.g445371.t1.1		3581498,3580981	3582446,3581340	
chr10	3585407	3589598	3585632	3587578	+	Cre10.g445395.t1.1	Cre10.g445395.t1.1		3585407,3586527,3586837,3587545	3585742,3586593,3586935,3589598	
chr10	3587282	3587816	3587309	3587511	-	Cre10.g445419.t1.1	Cre10.g445419.t1.1		3587282	3587816	
chr10	3589697	3592208	3589955	3590878	+	Cre10.g445443.t1.1	Cre10.g445443.t1.1		3589697,3590142,3590854	3589971,3590341,3592208	
chr10	3592267	3597078	3593297	3596150	+	Cre10.g445467.t1.1	Cre10.g445467.t1.1		3592267,3593198,3593774,3594134,3594617,3595253,3595799,3596150	3592623,3593383,3593856,3594173,3594671,3595361,3595915,3597078	
chr10	3592267	3598188	3593297	3595864	+	Cre10.g445467.t2.1	Cre10.g445467.t2.1		3592267,3593198,3593774,3594134,3594617,3595253,3595799	3592623,3593383,3593856,3594173,3594671,3595361,3598188	
chr10	3625181	3633896	3625762	3633473	-	Cre10.g445600.t1.1	Cre10.g445600.t1.1		3633283,3632884,3632600,3632304,3632039,3631742,3631370,3631037,3630733,3630287,3629562,3629229,3628790,3628501,3628174,3627891,3627655,3627366,3626366,3626080,3625181	3633896,3632951,3632746,3632396,3632195,3631893,3631468,3631192,3630798,3630524,3630173,3629428,3629084,3628659,3628374,3628027,3627729,3627510,3627121,3626218,3625898	
chr10	3634327	3645088	3634627	3643775	+	SMC3	Cre10.g445650.t1.2		3634327,3634734,3635038,3635174,3635391,3635663,3635925,3636127,3636517,3636849,3637162,3637453,3637866,3638219,3638585,3638731,3638983,3639323,3639595,3639859,3640134,3640435,3640637,3640834,3641240,3641598,3641954,3642240,3642685,3642947,3643210,3643541	3634642,3634809,3635076,3635241,3635462,3635742,3635997,3636279,3636663,3637001,3637323,3637605,3637986,3638388,3638629,3638845,3639127,3639443,3639738,3639972,3640265,3640514,3640721,3641098,3641388,3641729,3642080,3642394,3642813,3643036,3643308,3645088	Structural Maintenance of Chromosomes protein 3 homolog, ChromDB CPC3403; Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation; ts-lethal mutant was isolated (PMID 29743196)
chr10	3645177	3654348	3645966	3653187	+	Cre10.g445700.t1.1	Cre10.g445700.t1.1		3645177,3645901,3647222,3647489,3648681,3648987,3649167,3649442,3649767,3649935	3645772,3647034,3647357,3648510,3648845,3649046,3649299,3649644,3649823,3654348	
chr10	3655337	3657279	3655419	3655714	+	Cre10.g445750.t1.2	Cre10.g445750.t1.2		3655337	3657279	
chr10	3657557	3662688	3657641	3661845	+	Cre10.g445800.t1.1	Cre10.g445800.t1.1		3657557,3658111,3658297,3658512,3658642,3658872,3660728	3657749,3658178,3658393,3658550,3658746,3660409,3662688	
chr10	3662700	3670466	3664131	3670353	-	Cre10.g445850.t1.1	Cre10.g445850.t1.1		3670221,3669696,3669079,3668733,3668473,3668241,3667895,3667536,3667266,3666955,3666586,3666266,3662700	3670466,3669839,3669209,3668873,3668518,3668353,3667982,3667758,3667366,3667155,3666819,3666421,3666072	
chr10	3670657	3677588	3670854	3676952	+	Cre10.g445900.t1.1	Cre10.g445900.t1.1		3670657,3671098,3671302,3671559,3671794,3672773,3673820,3674179,3674485,3674765,3675075,3675456,3675750,3676203,3676365,3676618,3676828	3670875,3671170,3671381,3671633,3672609,3673631,3673901,3674277,3674615,3674926,3675269,3675643,3675970,3676251,3676445,3676712,3677588	
chr10	3684257	3689852	3684483	3688731	+	Cre10.g445952.t1.1	Cre10.g445952.t1.1		3684257,3684468,3685611,3687009,3687349,3687762	3684351,3685470,3686891,3687254,3687648,3689852	
chr10	3691118	3696878	3691311	3696147	+	Cre10.g446000.t1.1	Cre10.g446000.t1.1		3691118,3691658,3692177,3692866,3693198,3693588,3693806,3695589,3695811	3691551,3691896,3692262,3693071,3693328,3693680,3695354,3695642,3696878	
chr10	3696927	3698858	3696952	3698839	+	Cre10.g446050.t1.1	Cre10.g446050.t1.1		3696927,3697372,3697629,3697920,3698545,3698832	3697175,3697454,3697744,3698111,3698712,3698858	
chr10	3698861	3701008	3699754	3700893	-	TRXy	Cre10.g446100.t1.2		3700757,3700547,3700341,3700161,3698861	3701008,3700610,3700410,3700217,3699886	Initially identified in Chlamydomonas [PMID: 12753911]; chloroplastic localization confirmed experimentally in Arabidopsis [PMID: 15531707] . TRX y could be involved in oxidative stress responses as it is the most efficient chloroplastic TRX for reduction of Peroxiredoxin-Q, a chloroplastic TRX dependent peroxidase [PMID: 15531707; PMID: 14976238].
chr10	3701127	3704148	3701674	3703754	+	Cre10.g446150.t1.2	Cre10.g446150.t1.2		3701127,3702003,3702414,3702865,3703098,3703588	3701828,3702172,3702566,3702972,3703369,3704148	
chr10	3704151	3706346	3704854	3706203	-	Cre10.g446200.t1.2	Cre10.g446200.t1.2		3705978,3705617,3705214,3704151	3706346,3705732,3705355,3705061	
chr10	3706487	3713658	3706784	3712869	+	Cre10.g446250.t1.1	Cre10.g446250.t1.1		3706487,3708237,3708532,3708935,3709393,3710123,3710467,3711068,3711401,3711945	3708056,3708440,3708801,3709170,3709969,3710285,3710579,3711170,3711654,3713658	
chr10	3713747	3720230	3714105	3718611	+	Cre10.g446275.t1.1	Cre10.g446275.t1.1		3713747,3714624,3716339,3717127	3714496,3716260,3716999,3720230	
chr10	3720916	3724499	3721005	3723604	+	Cre10.g446300.t1.2	Cre10.g446300.t1.2		3720916,3721280,3721421,3721701,3721899,3722227,3722588,3722968	3721103,3721353,3721479,3721730,3721940,3722369,3722687,3724499	
chr10	3724507	3727322	3725177	3727293	-	CGLD14	Cre10.g446350.t1.1		3727168,3726989,3726818,3726654,3726496,3726160,3725946,3725683,3725487,3724507	3727322,3727065,3726850,3726693,3726548,3726311,3726002,3725732,3725561,3725292	
chr10	3727453	3732639	3727517	3731982	+	KAT3	Cre10.g446400.t1.1		3727453,3727761,3728396,3728761,3729030,3729349,3729675,3730138,3730418,3730713,3730998,3731296,3731614,3731862	3727691,3727871,3728552,3728902,3729165,3729465,3729828,3730193,3730525,3730847,3731072,3731441,3731722,3732639	
chr10	3733155	3737784	3733412	3735884	+	Cre10.g446450.t1.2	Cre10.g446450.t1.2		3733155,3733914,3734103,3734338,3734715,3735025,3735542	3733823,3733976,3734159,3734511,3734804,3735198,3737784	
chr10	3737787	3740818	3738442	3740699	-	CPL24	Cre10.g446500.t1.1		3740585,3740358,3740017,3739725,3739280,3738646,3737787	3740818,3740452,3740233,3739898,3739400,3738734,3738520	Conserved in photosynthetic organisms; contains pfam07534: TLD domain; null-allele mutant was isolated (PMID 29743196)
chr10	3740943	3742444	3740989	3741854	+	ATPVF	Cre10.g446550.t1.2		3740943,3741143,3741289,3741592,3741809	3741046,3741224,3741413,3741648,3742444	Probable vacuolar ATP synthase subunit F; V-ATPase F subunit; Vacuolar proton pump F subunit
chr10	3742819	3756772	3743982	3756240	-	Cre10.g446600.t1.2	Cre10.g446600.t1.2		3754470,3749447,3742819	3756772,3754238,3749273	
chr10	3756913	3767282	3757596	3767088	-	Cre10.g446650.t1.1	Cre10.g446650.t1.1		3765853,3765678,3765389,3765114,3764894,3764656,3764373,3764105,3763908,3763637,3763438,3763255,3763053,3762843,3762553,3762278,3762051,3761769,3761297,3761077,3760791,3760483,3760222,3756913	3767282,3765738,3765573,3765279,3765013,3764761,3764523,3764249,3764003,3763713,3763534,3763323,3763122,3762934,3762684,3762379,3762130,3761943,3761406,3761170,3760926,3760621,3760372,3760086	Related to MER3
chr10	3767428	3771122	3768071	3770826	-	ANK28	Cre10.g446700.t1.2		3770643,3770034,3769771,3769496,3768899,3768467,3767428	3771122,3770432,3769899,3769606,3769345,3768778,3768248	protein of unknown function with ankyrin repeats
chr10	3772493	3776480	3772705	3776105	+	Cre10.g446750.t1.1	Cre10.g446750.t1.1		3772493,3772935,3773241,3773561,3773832,3774213,3774422,3774582,3776105	3772747,3773044,3773335,3773726,3774012,3774313,3774499,3775896,3776480	
chr10	3772493	3776480	3772705	3776281	+	Cre10.g446750.t2.1	Cre10.g446750.t2.1		3772493,3772935,3773241,3773561,3773832,3774213,3774422,3775622,3776105	3772747,3773044,3773335,3773726,3774012,3774313,3774499,3775896,3776480	
chr10	3776653	3780574	3776939	3779399	+	Cre10.g446800.t1.2	Cre10.g446800.t1.2		3776653,3777319,3778197,3778566,3778944,3779258	3777178,3777868,3778424,3778717,3779067,3780574	
chr10	3780837	3804032	3781627	3803586	-	Cre10.g446850.t1.1	Cre10.g446850.t1.1		3803820,3803572,3797275,3795283,3793922,3793702,3792796,3789098,3788707,3788300,3787945,3787525,3787186,3786717,3786436,3786114,3785692,3785295,3784872,3784292,3784066,3783761,3783484,3783068,3782720,3780837	3804032,3803659,3803407,3796422,3795106,3793800,3793500,3792604,3788933,3788465,3788109,3787589,3787378,3787047,3786577,3786261,3785919,3785426,3785012,3784659,3784131,3783821,3783558,3783163,3782857,3782512	
chr10	3804188	3807942	3804646	3807820	-	Cre10.g446900.t1.2	Cre10.g446900.t1.2		3807659,3807301,3806640,3806182,3805919,3805539,3805085,3804188	3807942,3807404,3806997,3806311,3806011,3805733,3805343,3804903	
chr10	3808103	3810501	3808225	3810343	+	Cre10.g446950.t1.1	Cre10.g446950.t1.1		3808103,3808481,3810274	3808392,3809987,3810501	
chr10	3810613	3812484	3810781	3811625	+	Cre10.g447000.t1.2	Cre10.g447000.t1.2		3810613,3811006,3811320,3811586	3810916,3811076,3811386,3812484	
chr10	3812491	3814657	3813670	3814345	-	Cre10.g447050.t1.1	Cre10.g447050.t1.1		3814323,3814061,3812491	3814657,3814161,3813742	
chr10	3814773	3816894	3814862	3816187	+	Cre10.g447100.t1.2	Cre10.g447100.t1.2		3814773,3816046	3815483,3816894	
chr10	3824143	3827925	3824319	3827811	+	Cre10.g447200.t1.1	Cre10.g447200.t1.1		3824143,3824633,3825141,3825792,3825898,3826155,3826521,3826902,3827080	3824551,3825001,3825596,3825811,3826034,3826380,3826839,3827003,3827925	
chr10	3827927	3829022	3828185	3828991	-	Cre10.g447225.t1.1	Cre10.g447225.t1.1		3828631,3828458,3827927	3829022,3828571,3828395	
chr10	3829093	3832204	3829502	3832179	+	Cre10.g447250.t1.1	Cre10.g447250.t1.1		3829093,3829442,3829689,3829953,3830217,3830464,3830711,3830958,3831205,3831445,3831692,3831932,3832179	3829311,3829551,3829798,3830062,3830254,3830573,3830774,3831067,3831268,3831554,3831801,3832041,3832204	
chr10	3829133	3832204	3829502	3832179	+	Cre10.g447250.t2.1	Cre10.g447250.t2.1		3829133,3829442,3829689,3829953,3830217,3830464,3830711,3830958,3831205,3831445,3831692,3831932,3832179	3829311,3829551,3829798,3830016,3830326,3830573,3830748,3831067,3831268,3831554,3831801,3832041,3832204	
chr10	3832221	3837782	3833378	3837672	-	DDI1	Cre10.g447300.t1.2		3837621,3837372,3836944,3836692,3836453,3836200,3835973,3834654,3834299,3833981,3833586,3832221	3837782,3837481,3837178,3836777,3836531,3836274,3836056,3834773,3834421,3834113,3833845,3833441	contains UBA domain
chr10	3837913	3845094	3838158	3844319	+	SEC23B	Cre10.g447350.t1.2		3837913,3838648,3839051,3839331,3839770,3840253,3840912,3841464,3841739,3842319,3842701,3843009,3843310	3838266,3838803,3839140,3839474,3840029,3840402,3841080,3841581,3842109,3842483,3842838,3843115,3845094	Expressed Protein. Similar to Sec23 component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex.
chr10	3845097	3847402	3846235	3847207	-	Cre10.g447400.t1.2	Cre10.g447400.t1.2		3847101,3845097	3847402,3846984	
chr10	3847653	3850434	3848327	3849305	+	Cre10.g447450.t1.2	Cre10.g447450.t1.2		3847653,3848550	3848433,3850434	
chr10	3850437	3856412	3850943	3856304	-	KIN16-2	Cre10.g447500.t1.1		3856109,3855720,3855320,3854890,3854655,3854269,3854013,3853544,3852976,3852578,3852132,3850437	3856412,3855810,3855554,3855076,3854714,3854437,3854068,3853837,3853323,3852712,3852325,3851964	kinesin-16 family, a new family separated from the polyphyletic kinesin-12 family (PMID: 16481395)
chr10	3856513	3863934	3856752	3863406	+	Cre10.g447550.t1.1	Cre10.g447550.t1.1		3856513,3857578,3858636,3858944,3859376,3859709,3860070,3860279,3860692,3861071,3861297,3861744,3862395,3862763	3857299,3858417,3858748,3859195,3859524,3859823,3860114,3860535,3860824,3861106,3861410,3862097,3862630,3863934	
chr10	3864449	3867132	3865650	3866714	-	Cre10.g447600.t1.2	Cre10.g447600.t1.2		3866524,3864449	3867132,3866405	
chr10	3867293	3869739	3867562	3868545	+	Cre10.g447650.t1.2	Cre10.g447650.t1.2		3867293,3867787	3867668,3869739	
chr10	3871521	3884762	3872351	3884676	-	Cre10.g447700.t1.1	Cre10.g447700.t1.1		3884473,3883603,3883124,3882914,3882064,3880306,3879592,3879228,3878756,3878212,3878027,3877661,3877285,3875524,3874983,3874469,3873969,3873495,3873181,3871521	3884762,3883705,3883416,3882968,3882664,3881817,3880055,3879345,3879055,3878516,3878043,3877763,3877434,3877098,3875309,3874774,3874282,3873814,3873353,3873068	
chr10	3884857	3889342	3885454	3889252	-	Cre10.g447735.t1.2	Cre10.g447735.t1.2		3889012,3888809,3888432,3887296,3885838,3884857	3889342,3888878,3888565,3888164,3887182,3885685	
chr10	3889876	3894647	3890671	3893726	+	AOF2	Cre10.g447767.t1.1		3889876,3891244,3891677,3892273,3892624,3893032	3891015,3891460,3892093,3892386,3892808,3894647	Flavin containing amine oxidoreductase
chr10	3894650	3898145	3895111	3897956	-	Cre10.g447800.t1.2	Cre10.g447800.t1.2		3897829,3897394,3894650	3898145,3897540,3897120	
chr10	3898326	3903519	3899258	3903150	+	YEE2	Cre10.g447850.t1.2		3898326,3899227,3899722,3900095,3900366,3900726,3900987,3901325,3901676,3902112,3902452,3903045	3899069,3899488,3899845,3900141,3900396,3900781,3901036,3901464,3901891,3902224,3902608,3903519	contains 2 DUF395 domains, found in YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains several conserved glycines and an invariant cysteine that is probably an important functional residue
chr10	3903566	3906224	3903876	3905406	+	Cre10.g447900.t1.2	Cre10.g447900.t1.2		3903566,3904086,3904316,3904736,3905029,3905406	3904023,3904160,3904540,3904799,3905175,3906224	
chr10	3903566	3906157	3903876	3905271	+	Cre10.g447900.t2.1	Cre10.g447900.t2.1		3903566,3904086,3904316,3904736,3905029,3905271	3904023,3904160,3904540,3904799,3905175,3906157	
chr10	3906271	3908280	3906519	3907632	+	Cre10.g447950.t1.2	Cre10.g447950.t1.2		3906271,3906508,3906745,3907042,3907482	3906356,3906573,3906909,3907296,3908280	
chr10	3908497	3910915	3908781	3910799	-	Cre10.g448000.t1.1	Cre10.g448000.t1.1		3909841,3909615,3909398,3909136,3908497	3910915,3909662,3909492,3909200,3909025	
chr10	3910965	3913315	3911300	3912751	-	Cre10.g448051.t1.1	Cre10.g448051.t1.1		3912979,3912725,3912256,3911932,3911593,3910965	3913315,3912873,3912380,3912089,3911715,3911375	
chr10	3913416	3915917	3913497	3915863	+	Cre10.g448100.t1.2	Cre10.g448100.t1.2		3913416,3913875,3913981,3914242	3913701,3913882,3914070,3915917	
chr10	3915938	3919665	3916703	3919525	-	Cre10.g448150.t1.1	Cre10.g448150.t1.1		3919352,3919099,3918803,3917603,3915938	3919665,3919158,3918884,3917909,3917458	
chr10	3919720	3925125	3919902	3924695	-	ARL9	Cre10.g448200.t1.1		3924692,3924331,3924211,3923966,3923659,3923454,3923008,3922290,3921870,3921652,3920624,3919720	3925125,3924460,3924269,3923991,3923761,3923498,3923304,3922835,3921991,3921703,3921417,3920476	
chr10	3925226	3931067	3925408	3929597	+	Cre10.g448250.t1.1	Cre10.g448250.t1.1		3925226,3925846,3926457,3927332,3927662,3928018,3928416	3925532,3926287,3926640,3927434,3927803,3928145,3931067	
chr10	3931070	3937105	3931887	3936909	-	Cre10.g448300.t1.1	Cre10.g448300.t1.1		3936891,3936682,3936209,3935958,3935576,3934943,3932786,3931070	3937105,3936787,3936423,3936043,3935768,3935337,3934439,3932484	
chr10	3937170	3941015	3938118	3940985	-	Cre10.g448350.t1.1	Cre10.g448350.t1.1		3940889,3940546,3940335,3939738,3939311,3939037,3938704,3938396,3937170	3941015,3940645,3940472,3940014,3939446,3939198,3938814,3938536,3938178	
chr10	3941116	3942691	3941150	3942237	+	Cre10.g448400.t1.1	Cre10.g448400.t1.1		3941116,3941380,3941556,3941907	3941293,3941437,3941660,3942691	
chr10	3942700	3948815	3943782	3948694	-	XUV2	Cre10.g448450.t1.1		3948565,3948369,3948001,3947582,3947327,3946933,3946610,3946286,3946073,3945948,3945673,3945224,3944901,3944582,3944228,3942700	3948815,3948406,3948174,3947791,3947419,3947090,3946732,3946356,3946200,3945979,3945770,3945386,3945040,3944716,3944400,3943984	related to plants; also related to bacterial inner membrane proteins
chr10	3949156	3954275	3949944	3953679	+	Cre10.g448500.t1.1	Cre10.g448500.t1.1		3949156,3950166,3950571,3950868,3951152,3951429,3951675,3951944,3952288,3952505,3952812,3953121,3953363,3953607	3950040,3950248,3950686,3951008,3951222,3951548,3951830,3952045,3952350,3952623,3952929,3953234,3953488,3954275	
chr10	3956410	3959895	3956874	3959204	-	Cre10.g448550.t1.1	Cre10.g448550.t1.1		3959494,3959331,3959184,3958824,3958566,3958242,3957905,3957402,3956410	3959895,3959391,3959245,3958982,3958653,3958348,3957998,3957658,3957196	
chr10	3960196	3967237	3960337	3966639	+	Cre10.g448600.t1.2	Cre10.g448600.t1.2		3960196,3961113,3961981,3962396,3962858,3963238,3963713,3964433,3964835,3965567,3966188,3966549	3960882,3961587,3962056,3962506,3962919,3963353,3963827,3964512,3965093,3965820,3966284,3967237	
chr10	3967240	3973195	3967697	3973108	-	KDG5	Cre10.g448650.t1.1		3972748,3972475,3972063,3971578,3971122,3970602,3970115,3969764,3969309,3968716,3967240	3973195,3972600,3972146,3971655,3971224,3970939,3970177,3969847,3969463,3968869,3968171	
chr10	3973250	3979065	3973534	3978894	-	Cre10.g448700.t1.2	Cre10.g448700.t1.2		3978780,3978483,3977969,3977374,3976981,3976609,3976315,3975951,3975419,3974911,3974367,3973958,3973250	3979065,3978695,3978124,3977643,3977091,3976710,3976384,3976041,3975578,3975008,3974610,3974086,3973705	
chr10	3979186	3984077	3979637	3983846	+	Cre10.g448750.t1.1	Cre10.g448750.t1.1		3979186,3980208,3980520,3980897,3981190,3981350,3981867,3982161,3982313,3982660,3983051,3983253,3983596,3983735	3979912,3980303,3980685,3981008,3981251,3981670,3982010,3982209,3982455,3982781,3983084,3983401,3983620,3984077	
chr10	3984128	3986130	3984382	3985897	+	Cre10.g448800.t1.1	Cre10.g448800.t1.1		3984128,3984703,3984917,3985235,3985449,3985660	3984570,3984756,3985085,3985284,3985554,3986130	
chr10	3986186	3992077	3986265	3991907	+	ODA5AK	Cre10.g448850.t1.2		3986186,3986637,3986965,3987255,3987695,3987986,3988403,3988845,3989163,3989728,3990105,3990697,3991035,3991715	3986433,3986755,3987073,3987446,3987769,3988208,3988632,3988978,3989496,3989879,3990345,3990819,3991418,3992077	Similar to Calpain cystein proteases
chr10	3992160	3995155	3992773	3995015	-	Cre10.g448900.t1.1	Cre10.g448900.t1.1		3994894,3994487,3994143,3992160	3995155,3994666,3994372,3993778	
chr10	3995266	3999447	3995604	3997872	+	Cre10.g448950.t1.1	Cre10.g448950.t1.1		3995266,3995902,3996148,3996524,3996940,3997431	3995799,3996007,3996300,3996681,3997239,3999447	
chr10	3999946	4003457	4000115	4002082	+	Cre10.g448977.t1.2	Cre10.g448977.t1.2		3999946,4000655,4000855,4001122,4001379,4001608,4001818	4000143,4000759,4000928,4001204,4001436,4001673,4003457	
chr10	4003565	4005935	4003702	4005431	+	LZY1	Cre10.g449000.t1.1		4003565,4003863,4004080,4004333,4004700,4004948	4003763,4003942,4004172,4004473,4004774,4005935	Putative aminotransferase, class I and II; possible valine-pyruvate transaminase (EC 2.6.1.66)
chr10	4006946	4010817	4007025	4010795	+	Cre10.g449020.t1.1	Cre10.g449020.t1.1		4006946,4007255,4007489,4007824,4008285,4008689,4009388,4009606,4009812,4010114,4010446,4010717	4007130,4007340,4007551,4008066,4008417,4009176,4009479,4009640,4009898,4010170,4010571,4010817	
chr10	4006946	4010817	4007415	4010795	+	Cre10.g449020.t2.1	Cre10.g449020.t2.1		4006946,4007255,4007489,4007824,4008285,4008689,4009388,4009606,4009812,4010114,4010446,4010717	4007130,4007423,4007551,4008066,4008417,4009176,4009479,4009640,4009898,4010170,4010571,4010817	
chr10	4010820	4014755	4011129	4014314	-	Cre10.g449050.t1.2	Cre10.g449050.t1.2		4014165,4013971,4013370,4012983,4012698,4012411,4011929,4011556,4010820	4014755,4014029,4013580,4013095,4012773,4012507,4012107,4011684,4011229	
chr10	4015020	4019555	4016375	4018969	-	MCP25	Cre10.g449100.t1.2		4018848,4018693,4018476,4018217,4017842,4017450,4017012,4016775,4015020	4019555,4018753,4018585,4018314,4017919,4017602,4017190,4016841,4016525	
chr10	4019706	4021287	4019977	4021181	+	Cre10.g449127.t1.2	Cre10.g449127.t1.2		4019706,4019974	4019831,4021287	
chr10	4021336	4022520	4021384	4022113	+	Cre10.g449138.t1.1	Cre10.g449138.t1.1		4021336,4022113	4022010,4022520	
chr10	4022530	4026710	4023156	4026321	-	Cre10.g449150.t1.1	Cre10.g449150.t1.1		4026263,4025861,4024139,4023768,4023457,4022530	4026710,4026150,4025719,4023916,4023611,4023305	
chr10	4026895	4042865	4027475	4042326	-	ANK5	Cre10.g449200.t1.1		4042680,4041984,4040815,4039417,4038127,4037618,4037172,4036879,4036307,4035812,4035166,4033596,4032827,4032449,4032154,4031811,4031471,4026895	4042865,4042333,4041769,4040730,4039166,4038019,4037461,4037053,4036738,4036147,4035597,4034999,4033456,4032682,4032263,4031964,4031663,4031257	protein of unknown function with ankyrin repeats; null-allele mutant was isolated (PMID 29743196)
chr10	4042936	4050327	4043118	4049132	+	KAP1	Cre10.g449250.t1.2		4042936,4043328,4043481,4043731,4044242,4044719,4045036,4045308,4045532,4045898,4046201,4046438,4046802,4047091,4047287,4047688,4048148,4048487,4048771,4048971	4043199,4043395,4043571,4044007,4044357,4044805,4045188,4045363,4045598,4046029,4046296,4046602,4046945,4047162,4047448,4047918,4048324,4048630,4048834,4050327	Kinesin-associated protein; probable non-motor subunit of kinesin-II, the anterograde motor for intraflagellar transport.
chr10	4053310	4062785	4054416	4062106	-	Cre10.g449300.t1.1	Cre10.g449300.t1.1		4061810,4061654,4061311,4061072,4060795,4060528,4060251,4059974,4059706,4059439,4059172,4058895,4058619,4058343,4058076,4057799,4057523,4057256,4056979,4056702,4056425,4056208,4055941,4055664,4055387,4055121,4054845,4053310	4062785,4061745,4061398,4061161,4060884,4060617,4060340,4060063,4059795,4059528,4059261,4058984,4058708,4058432,4058165,4057888,4057612,4057345,4057068,4056791,4056514,4056297,4056030,4055753,4055476,4055210,4054934,4054657	
chr10	4062880	4064425	4063443	4064306	-	Cre10.g449350.t1.2	Cre10.g449350.t1.2		4064156,4063835,4062880	4064425,4063930,4063638	
chr10	4064478	4068385	4065256	4068288	-	Cre10.g449400.t1.1	Cre10.g449400.t1.1		4067999,4066112,4065476,4064478	4068385,4067850,4065923,4065327	
chr10	4068436	4071735	4068970	4071261	-	Cre10.g449450.t1.1	Cre10.g449450.t1.1		4070653,4069745,4069279,4068436	4071735,4070498,4069600,4069152	
chr10	4071800	4073425	4072172	4073351	-	Cre10.g449501.t1.1	Cre10.g449501.t1.1		4073230,4072836,4071800	4073425,4073013,4072542	
chr10	4073585	4075625	4073991	4075547	-	PRX3	Cre10.g449550.t1.2		4075523,4075263,4075048,4074792,4074413,4073585	4075625,4075346,4075091,4074906,4074556,4074066	thioredoxin dependent peroxidase, probably cytosolic
chr10	4075726	4078550	4075752	4078144	+	SPR1	Cre10.g449600.t1.1		4075726,4076546,4076891,4077111,4077802	4076394,4076767,4076944,4077632,4078550	
chr10	4078560	4082275	4078719	4082154	-	Cre10.g449650.t1.1	Cre10.g449650.t1.1		4080961,4079362,4078560	4082275,4080796,4079055	
chr10	4083989	4094005	4084869	4093885	-	Cre10.g449700.t1.1	Cre10.g449700.t1.1		4093803,4093345,4092998,4092778,4092494,4092206,4091907,4091633,4090504,4090286,4089995,4089701,4089195,4088825,4088605,4087759,4087532,4086728,4086394,4086096,4085614,4085273,4083989	4094005,4093406,4093081,4092878,4092637,4092294,4092076,4091770,4091498,4090367,4090143,4089842,4089478,4089058,4088666,4088478,4087636,4087395,4086558,4086266,4085810,4085423,4085082	
chr10	4094603	4177585	4095389	4177253	-	PKS1	Cre10.g449750.t1.1		4176461,4175547,4175172,4174681,4174097,4173720,4173364,4172862,4169591,4169105,4168724,4168294,4167887,4165803,4164983,4164702,4164082,4163448,4163087,4162708,4161759,4160098,4153979,4148545,4147973,4147624,4147273,4141268,4140947,4140610,4135893,4134509,4134108,4129650,4129251,4128876,4128521,4127183,4123328,4122842,4116814,4116504,4116196,4110232,4109770,4109352,4106471,4106094,4105869,4103307,4102476,4102020,4101640,4101316,4100950,4100396,4098904,4098204,4097814,4094603	4177585,4176243,4175321,4174866,4174308,4173891,4173554,4173173,4172643,4169472,4168917,4168551,4168130,4167655,4165685,4164871,4164522,4163894,4163275,4162918,4162454,4161567,4159948,4153855,4148320,4147840,4147524,4147184,4141156,4140833,4140521,4135787,4134401,4133978,4129519,4129089,4128732,4128382,4127001,4123203,4122672,4116657,4116377,4116031,4110071,4109614,4109239,4106282,4105940,4105712,4103167,4102197,4101749,4101481,4101056,4100672,4100214,4098649,4097939,4097640	Contains beta-ketoacyl-ACP synthase domains and polyketide sythase KR domains; the largest gene in Chlamydomonas; null-allele mutant was isolated (PMID 29743196)
chr10	4178024	4181079	4178832	4180707	-	Cre10.g449800.t1.1	Cre10.g449800.t1.1		4181044,4180487,4179808,4179154,4178024	4181079,4180879,4179973,4179365,4179050	
chr10	4181185	4187129	4181847	4186844	-	Cre10.g449850.t1.1	Cre10.g449850.t1.1		4186559,4186278,4185979,4183133,4181185	4187129,4186419,4186016,4185817,4182933	
chr10	4187294	4190739	4188624	4190313	-	Cre10.g449901.t1.1	Cre10.g449901.t1.1		4189893,4189491,4189239,4187294	4190739,4189594,4189266,4188942	
chr10	4190804	4205819	4191370	4205595	-	Cre10.g449950.t1.2	Cre10.g449950.t1.2		4205454,4205068,4204756,4204471,4203972,4203531,4203018,4202372,4201746,4200974,4199958,4199499,4198859,4197967,4197510,4196120,4195223,4194639,4193844,4193448,4192923,4192460,4190804	4205819,4205138,4204806,4204546,4204179,4203716,4203123,4202568,4201891,4201407,4200480,4199545,4199249,4198581,4197691,4197221,4195846,4194806,4194257,4193599,4193127,4192567,4192147	
chr10	4205995	4211439	4206843	4211246	-	Cre10.g450000.t1.2	Cre10.g450000.t1.2		4209558,4208705,4207611,4207142,4205995	4211439,4209419,4208540,4207445,4206959	
chr10	4211574	4216699	4212095	4216383	-	Cre10.g450050.t1.1	Cre10.g450050.t1.1		4216140,4215527,4215325,4215114,4214925,4214718,4214405,4214104,4213839,4213455,4212950,4212484,4211574	4216699,4216015,4215382,4215152,4214995,4214773,4214497,4214190,4213924,4213542,4213130,4212625,4212361	
chr10	4216800	4233761	4217100	4233019	+	Cre10.g450100.t1.1	Cre10.g450100.t1.1		4216800,4218084,4218825,4223394,4224419,4224819,4225268,4225911,4226469,4226777,4227170,4227525,4227895,4228264,4228778,4229426,4229709,4230072,4232625	4217853,4218511,4223171,4224144,4224511,4224918,4225566,4226012,4226570,4226881,4227238,4227644,4228052,4228409,4228854,4229473,4229874,4232451,4233761	
chr10	4233774	4237229	4234662	4236730	-	Cre10.g450150.t1.2	Cre10.g450150.t1.2		4236667,4235091,4233774	4237229,4236509,4234857	
chr10	4237634	4242869	4240187	4242448	-	Cre10.g450200.t1.2	Cre10.g450200.t1.2		4242268,4240612,4237634	4242869,4242057,4240382	
chr10	4243109	4246159	4244089	4245105	-	Cre10.g450254.t1.2	Cre10.g450254.t1.2		4246039,4244221,4243109	4246159,4245802,4244089	
chr10	4246280	4249554	4246404	4249389	+	Cre10.g450300.t1.1	Cre10.g450300.t1.1		4246280,4247558,4248202,4248963	4247349,4247990,4248674,4249554	
chr10	4249662	4251349	4250227	4251217	-	IFT25	Cre10.g450350.t1.2		4251018,4250876,4250612,4249662	4251349,4250944,4250726,4250414	Found in the flagellar proteome [PMID: 15998802]; belongs to core of IFT-B particle; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr10	4251476	4254030	4252094	4253953	-	NUO5	Cre10.g450400.t1.2		4253752,4253390,4252826,4252424,4251476	4254030,4253643,4252982,4252519,4252235	NADH:ubiquinone oxidoreductase (Complex I) 24 kD subunit, mitochondrial; gi 34328782 gb AAQ63695.1  =NUOE [PMID: 15710684; PMID: 15450959]
chr10	4255251	4258109	4255781	4257990	-	FAP18	Cre10.g450450.t1.2		4257957,4256922,4256491,4256187,4255251	4258109,4257812,4256736,4256330,4256042	Flagellar Associated Protein, found in the flagellar proteome; high E/A/P content.  Similar to IgA-specific serine peptidase
chr10	4258498	4264436	4259626	4264322	-	Cre10.g450500.t1.1	Cre10.g450500.t1.1		4264175,4264018,4263618,4263192,4261896,4261682,4261461,4261145,4260657,4260366,4258498	4264436,4264077,4263740,4263426,4262837,4261750,4261502,4261218,4260904,4260465,4259872	
chr10	4264560	4271252	4264617	4270869	+	Cre10.g450550.t1.1	Cre10.g450550.t1.1		4264560,4264990,4265489,4265882,4266398,4266679,4266940,4267481,4267924,4268230,4268447,4268756,4269182,4269671,4270269	4264775,4265133,4265548,4265950,4266444,4266722,4267049,4267592,4267985,4268278,4268513,4268866,4269263,4269794,4271252	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr10	4271300	4279861	4271666	4279073	+	Cre10.g450600.t1.1	Cre10.g450600.t1.1		4271300,4272347,4272826,4273156,4273494,4273948,4274465,4274930,4276493,4277416,4277782,4278134,4278439	4271935,4272454,4272922,4273220,4273587,4274096,4274612,4276108,4277194,4277547,4277928,4278210,4279861	
chr10	4280360	4282637	4281292	4281673	+	Cre10.g450626.t1.1	Cre10.g450626.t1.1		4280360,4281267,4281623	4280657,4281539,4282637	
chr10	4282890	4290070	4283226	4289384	+	Cre10.g450650.t1.2	Cre10.g450650.t1.2		4282890,4284260,4284554,4284877,4285291,4285584,4285995,4286478,4286886,4287525,4287915,4288432,4288752,4289006,4289299	4284020,4284397,4284653,4284944,4285378,4285726,4286265,4286725,4287396,4287716,4288127,4288518,4288805,4289082,4290070	
chr10	4290280	4292452	4290396	4292157	+	CSB39	Cre10.g450700.t1.1		4290280,4291808,4292034	4291689,4291918,4292452	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr10	4292560	4294619	4292785	4293387	+	Cre10.g450750.t1.2	Cre10.g450750.t1.2		4292560,4293056	4292808,4294619	
chr10	4295790	4298331	4296567	4297783	+	Cre10.g450800.t1.2	Cre10.g450800.t1.2		4295790,4296730,4297022,4297278,4297479,4297741	4296576,4296870,4297135,4297334,4297562,4298331	
chr10	4298394	4307439	4298886	4307411	-	Cre10.g450850.t1.1	Cre10.g450850.t1.1		4307182,4306274,4305914,4305601,4305279,4304753,4304486,4304116,4303534,4303126,4302638,4302324,4301912,4301469,4300942,4300555,4299992,4299566,4298394	4307439,4306358,4306012,4305697,4305343,4304843,4304524,4304231,4303678,4303182,4302846,4302396,4302028,4301549,4301166,4300680,4300084,4299667,4299369	null-allele mutant was isolated (PMID 29743196)
chr10	4307585	4313989	4308158	4313894	-	Cre10.g450879.t1.2	Cre10.g450879.t1.2		4313876,4313656,4313243,4312732,4312270,4311900,4311542,4311056,4310527,4309875,4308875,4307585	4313989,4313745,4313311,4312854,4312365,4312056,4311606,4311139,4310661,4310006,4309164,4308564	
chr10	4314100	4318261	4314219	4317433	+	Cre10.g450900.t1.2	Cre10.g450900.t1.2		4314100,4314503,4315116,4315420,4315681,4316260,4316848,4317394	4314374,4314717,4315224,4315525,4315805,4316408,4316954,4318261	
chr10	4318330	4324011	4318459	4323817	+	Cre10.g450926.t1.1	Cre10.g450926.t1.1		4318330,4318686,4319148,4319310,4319639,4319850,4320907,4321204,4323109	4318511,4318777,4319176,4319464,4319715,4319906,4321050,4321314,4324011	
chr10	4324027	4326709	4324947	4325936	-	Cre10.g450950.t1.2	Cre10.g450950.t1.2		4325927,4325633,4325366,4325199,4324027	4326709,4325773,4325476,4325255,4325052	
chr10	4326788	4331029	4327099	4330897	-	Cre10.g451000.t1.2	Cre10.g451000.t1.2		4330691,4330327,4329841,4329170,4328761,4328289,4327915,4327575,4326788	4331029,4330504,4329912,4329497,4328966,4328336,4328024,4327728,4327360	modifies tRNAs for Asn, Asp, His, and Tyr with hypermodified base, queuine, at position 34 (the first/wobble posiition of the anticodon)
chr10	4331084	4335869	4331335	4335831	-	Cre10.g451050.t1.1	Cre10.g451050.t1.1		4333818,4332914,4332453,4331084	4335869,4333429,4332635,4332196	
chr10	4335949	4341509	4336754	4341226	-	Cre10.g451100.t1.1	Cre10.g451100.t1.1		4340595,4339959,4339289,4338712,4338150,4337902,4337432,4335949	4341509,4340207,4339376,4338835,4338212,4337988,4337572,4337261	
chr10	4341645	4346109	4341829	4344366	+	Cre10.g451150.t1.1	Cre10.g451150.t1.1		4341645,4342214,4343673,4344166	4341902,4343503,4343918,4346109	
chr10	4346160	4348839	4346957	4348163	+	Cre10.g451200.t1.2	Cre10.g451200.t1.2		4346160,4347119,4347421,4347674,4347871,4348121	4346966,4347262,4347531,4347730,4347954,4348839	
chr10	4349046	4366261	4350212	4365944	-	Cre10.g451250.t1.1	Cre10.g451250.t1.1		4365858,4365664,4365330,4364943,4364697,4364314,4363611,4363005,4362796,4362543,4362308,4359817,4356765,4355368,4354723,4354397,4353974,4353672,4353286,4352889,4352365,4350808,4349046	4366261,4365773,4365421,4365078,4364749,4364485,4364146,4363479,4362843,4362569,4362393,4362139,4359640,4356431,4355089,4354507,4354163,4353759,4353357,4353027,4352662,4352240,4350593	
chr10	4366316	4372021	4366924	4371928	-	EXN13	Cre10.g451300.t1.1		4371053,4370620,4370204,4369305,4368880,4368454,4368020,4367603,4366316	4372021,4370863,4370368,4369832,4369035,4368606,4368166,4367742,4367213	
chr10	4372076	4372871	4372238	4372735	-	Cre10.g451350.t1.1	Cre10.g451350.t1.1		4372652,4372496,4372076	4372871,4372557,4372420	
chr10	4373022	4380953	4373124	4379937	+	CNX1E	Cre10.g451400.t1.1		4373022,4373394,4373613,4373951,4376612,4377612,4378140,4378557,4379129,4379667	4373233,4373458,4373733,4374098,4376736,4377715,4378236,4378721,4379361,4380953	molybdopterin biosynthesis enzyme; related to C terminal region of Molybdopterin biosynthesis CNX1 protein (Molybdenum cofactor biosynthesis enzyme CNX1); Homologous to Arabidopsis thaliana Cnx1E
chr10	4386192	4398715	4386543	4395796	+	Cre10.g451450.t1.1	Cre10.g451450.t1.1		4386192,4386967,4387340,4387939,4389019,4389690,4390121,4391190,4392717,4393059,4393537,4394351,4394597,4395075,4395411,4395690	4386780,4387079,4387703,4388820,4389377,4389888,4390987,4392422,4392835,4393377,4394116,4394421,4394778,4395129,4395481,4398715	
chr10	4399617	4401621	4400917	4401119	-	Cre10.g451477.t1.1	Cre10.g451477.t1.1		4399617	4401621	
chr10	4405152	4408403	4405268	4408272	+	SRR28A	Cre10.g451500.t1.2		4405152,4405445,4405755,4405976,4406480,4406830,4407159,4407512,4408002	4405317,4405538,4405834,4406194,4406502,4406994,4407259,4407617,4408403	Should probably be fused with upstream gene model, Scavenger receptor cysteine-rich protein, to form a very large protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain; part of a group of 5 closely-related SRR proteins.
chr10	4408462	4470573	4408571	4469677	+	SRR28B	Cre10.g451600.t1.1		4408462,4408849,4409179,4409339,4409681,4409979,4410324,4410594,4410977,4411211,4411612,4411944,4412403,4412788,4413146,4413561,4413961,4414413,4414903,4415221,4415650,4416153,4416469,4416685,4416896,4417420,4417857,4418286,4418646,4419042,4419414,4420346,4420575,4420832,4421221,4421818,4422149,4422438,4422942,4423267,4423518,4424024,4424453,4424704,4425164,4425581,4425788,4426002,4426317,4426698,4427005,4427304,4427539,4427863,4428133,4428656,4428978,4429285,4429731,4433015,4433357,4433597,4433905,4434102,4434377,4434847,4435052,4435212,4435390,4435607,4436002,4436231,4436482,4436627,4436970,4437265,4437643,4437981,4438397,4438736,4439358,4439605,4439915,4440376,4440657,4441260,4441758,4441992,4442330,4442730,4442992,4443357,4443601,4443768,4444038,4444325,4444735,4444955,4445215,4445512,4445823,4445976,4446209,4446631,4447207,4447377,4447765,4447997,4448256,4448518,4449026,4449261,4449614,4450026,4450389,4450808,4451096,4451409,4451884,4452181,4452510,4452911,4453383,4453784,4454379,4454669,4455094,4455517,4455767,4456092,4456409,4456666,4456888,4457183,4457428,4457659,4458326,4458505,4459150,4459393,4459776,4460105,4460486,4460904,4461325,4461643,4462022,4462193,4462494,4462764,4463051,4463425,4463797,4464231,4464585,4464940,4465302,4465774,4465999,4466246,4466478,4466822,4467373,4467765,4468273,4468852	4408667,4409065,4409219,4409425,4409818,4410105,4410406,4410723,4411088,4411375,4411807,4412093,4412513,4412881,4413321,4413714,4414079,4414525,4415025,4415357,4415801,4416266,4416527,4416748,4417223,4417570,4418034,4418525,4418828,4419170,4420172,4420419,4420646,4420995,4421384,4421967,4422261,4422673,4423038,4423355,4423732,4424228,4424526,4424970,4425348,4425623,4425878,4426076,4426439,4426801,4427084,4427416,4427689,4427972,4428372,4428806,4429057,4429488,4429859,4433227,4433395,4433746,4433999,4434161,4434564,4434918,4435093,4435240,4435474,4435696,4436097,4436358,4436534,4436844,4437039,4437306,4437761,4438201,4438448,4439087,4439482,4439769,4440110,4440502,4440932,4441564,4441828,4442131,4442455,4442871,4443173,4443383,4443649,4443846,4444157,4444603,4444833,4445085,4445303,4445576,4445878,4446018,4446361,4446935,4447256,4447479,4447840,4448057,4448275,4448599,4449124,4449415,4449770,4450223,4450580,4450855,4451173,4451548,4451965,4452248,4452697,4453094,4453538,4453965,4454549,4454897,4455311,4455628,4455916,4456169,4456493,4456711,4456993,4457344,4457506,4457787,4458354,4458960,4459203,4459559,4459902,4460281,4460633,4461030,4461395,4461731,4462087,4462282,4462576,4462871,4463153,4463564,4463895,4464358,4464667,4465011,4465506,4465841,4466055,4466335,4466612,4467107,4467557,4467908,4468446,4470573	Should probably be fused with upstream gene model, Scavenger receptor cysteine-rich protein, to form a very large protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain; part of a group of 5 closely-related SRR proteins.
chr10	4408462	4443440	4408571	4443416	+	SRR28B	Cre10.g451600.t2.1		4408462,4408849,4409179,4409339,4409681,4409979,4410324,4410594,4410977,4411211,4411612,4411944,4412403,4412788,4413146,4413561,4413961,4414413,4414903,4415221,4415650,4416153,4416469,4416685,4416896,4417420,4417857,4418286,4418646,4419042,4419414,4420346,4420575,4420832,4421221,4421818,4422149,4422438,4422942,4423267,4423518,4424024,4424453,4424704,4425164,4425581,4425788,4426002,4426317,4426698,4427005,4427304,4427539,4427863,4428133,4428656,4428978,4429285,4429731,4433015,4433357,4433597,4433905,4434102,4434377,4434847,4435052,4435212,4435390,4435607,4436002,4436231,4436482,4436627,4436970,4437265,4437643,4437981,4438397,4438736,4439358,4439605,4439915,4440376,4440657,4441260,4441758,4441992,4442330,4442730,4442992,4443357	4408667,4409065,4409219,4409425,4409818,4410105,4410406,4410723,4411088,4411375,4411807,4412093,4412513,4412881,4413321,4413714,4414079,4414525,4415025,4415357,4415801,4416266,4416527,4416748,4417223,4417570,4418034,4418525,4418828,4419170,4420172,4420419,4420646,4420995,4421384,4421967,4422261,4422673,4423038,4423355,4423732,4424228,4424526,4424970,4425348,4425623,4425878,4426076,4426439,4426801,4427084,4427416,4427689,4427972,4428372,4428806,4429057,4429488,4429859,4433227,4433395,4433746,4433999,4434161,4434564,4434918,4435093,4435240,4435474,4435696,4436097,4436358,4436534,4436844,4437039,4437306,4437761,4438201,4438448,4439087,4439482,4439769,4440110,4440502,4440932,4441564,4441828,4442131,4442455,4442871,4443173,4443440	Should probably be fused with upstream gene model, Scavenger receptor cysteine-rich protein, to form a very large protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain; part of a group of 5 closely-related SRR proteins.
chr10	4443492	4470573	4444040	4469677	+	SRR28B	Cre10.g451600.t3.1		4443492,4443768,4444038,4444325,4444735,4444955,4445215,4445512,4445823,4445976,4446209,4446631,4447207,4447377,4447765,4447997,4448256,4448518,4449026,4449261,4449614,4450026,4450389,4450808,4451096,4451409,4451884,4452181,4452510,4452911,4453383,4453784,4454379,4454669,4455094,4455517,4455767,4456092,4456409,4456666,4456888,4457183,4457428,4457659,4458326,4458505,4459150,4459393,4459776,4460105,4460486,4460904,4461325,4461643,4462022,4462193,4462494,4462764,4463051,4463425,4463797,4464231,4464585,4464940,4465302,4465774,4465999,4466246,4466478,4466822,4467373,4467765,4468273,4468852	4443649,4443846,4444157,4444603,4444833,4445085,4445303,4445576,4445878,4446018,4446361,4446935,4447256,4447479,4447840,4448057,4448275,4448599,4449124,4449415,4449770,4450223,4450580,4450855,4451173,4451548,4451965,4452248,4452697,4453094,4453538,4453965,4454549,4454897,4455311,4455628,4455916,4456169,4456493,4456711,4456993,4457344,4457506,4457787,4458354,4458960,4459203,4459559,4459902,4460281,4460633,4461030,4461395,4461731,4462087,4462282,4462576,4462871,4463153,4463564,4463895,4464358,4464667,4465011,4465506,4465841,4466055,4466335,4466612,4467107,4467557,4467908,4468446,4470573	Should probably be fused with upstream gene model, Scavenger receptor cysteine-rich protein, to form a very large protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain; part of a group of 5 closely-related SRR proteins.
chr10	4471526	4481481	4472188	4480976	-	Cre10.g451700.t1.1	Cre10.g451700.t1.1		4480629,4479944,4479619,4479194,4478911,4478462,4477493,4477027,4474776,4471526	4481481,4480388,4479746,4479291,4479017,4478580,4478159,4477155,4476551,4474558	
chr10	4481576	4488961	4483265	4487811	-	PHC25	Cre10.g451752.t1.1		4488290,4488164,4487765,4487187,4486644,4486282,4485900,4485547,4485336,4484876,4484640,4484338,4483954,4483698,4481576	4488961,4488204,4487830,4487338,4486755,4486383,4486038,4485750,4485348,4485082,4484729,4484493,4484121,4483825,4483410	
chr10	4490232	4491963	4490977	4491613	+	Cre10.g451800.t1.2	Cre10.g451800.t1.2		4490232,4491166,4491338	4491032,4491243,4491963	
chr10	4492021	4496661	4492263	4496534	-	Cre10.g451850.t1.1	Cre10.g451850.t1.1		4496510,4496214,4495722,4495473,4494803,4494630,4494239,4493917,4493655,4493389,4492977,4492021	4496661,4496288,4496026,4495487,4495365,4494725,4494345,4494027,4493735,4493471,4493141,4492636	
chr10	4496857	4500497	4498247	4500423	-	THS1	Cre10.g451900.t1.1		4500314,4499870,4496857	4500497,4500135,4499369	putative threonine synthase (EC:4.2.3.1); organelle (mitochondria) targeting predicted by Target-P; plastid location expected based on homology
chr10	4501000	4506271	4501903	4506190	-	AAT1	Cre10.g451950.t1.2		4505913,4505749,4505302,4505015,4504656,4504273,4503697,4503311,4502809,4502509,4502201,4501000	4506271,4505798,4505409,4505116,4504788,4504416,4503785,4503424,4502968,4502647,4502336,4502017	Alanine aminotransferase (EC 2.6.1.2); CO2-responsive gene; predicted mitochondrial by Target-P [PMID: 8883380]
chr10	4506372	4509013	4506463	4508386	+	Cre10.g452000.t1.2	Cre10.g452000.t1.2		4506372,4506909,4507480,4507848	4506598,4507112,4507619,4509013	
chr10	4509503	4513091	4510153	4512802	-	LHCA4	Cre10.g452050.t1.2		4512721,4512240,4511957,4511748,4511466,4511145,4510746,4510458,4509503	4513091,4512305,4512040,4511800,4511505,4511311,4510842,4510565,4510252	
chr10	4516052	4517927	4516536	4517366	-	Cre10.g452076.t1.1	Cre10.g452076.t1.1		4517216,4516052	4517927,4516932	
chr10	4520613	4523220	4520677	4522374	+	PSBY	Cre10.g452100.t1.1		4520613,4521309	4520821,4523220	PsbY is found in higher plants and is a homolog of Ycf32 in Cyanobacteria and Chromophyta. Expressed as a precursor polyprotein which is processed into two Ycf32-related proteins (PsbY-A1 and -A2) in higher plants. PMID: 16143838; contains five PSBY repeats; the homologues in higher plant have only two repeats (PMID: 9512354), while 5 are found in the unique Ostreococcus PsbY; the function of PsbY in PSII is unclear : a Synechocystis mutant is slightly more sensitive to high light in Ca-depleted medium (PMID: 12461137)
chr10	4523232	4527237	4523938	4527153	-	Cre10.g452150.t1.2	Cre10.g452150.t1.2		4527051,4526649,4526114,4525492,4525212,4524964,4524727,4524373,4523232	4527237,4526795,4526221,4525813,4525297,4525072,4524788,4524429,4524181	null-allele passenger mutation was isolated (PMID 29743196)
chr10	4527292	4541967	4527674	4540964	-	Cre10.g452200.t1.1	Cre10.g452200.t1.1		4541407,4540844,4540138,4539441,4539115,4538428,4537894,4537433,4537087,4536717,4534530,4534202,4533904,4533506,4533005,4531981,4531289,4530771,4530201,4529417,4528069,4527292	4541967,4541018,4540377,4539870,4539194,4538762,4538008,4537681,4537203,4536900,4536583,4534298,4534052,4533592,4533241,4532750,4531583,4531013,4530392,4529931,4529131,4527773	
chr10	4542046	4545787	4542291	4545759	-	FAP41	Cre10.g452250.t1.1		4545324,4544392,4544171,4543898,4543662,4543451,4543250,4543028,4542046	4545787,4545051,4544239,4543939,4543673,4543501,4543300,4543078,4542840	redox sensitive
chr10	4545892	4550507	4546303	4550136	-	Cre10.g452300.t1.2	Cre10.g452300.t1.2		4549431,4548932,4548241,4547773,4547451,4547058,4546825,4546523,4545892	4550507,4549076,4548690,4547869,4547526,4547205,4546899,4546631,4546337	
chr10	4552550	4555246	4552624	4554411	+	Cre10.g452350.t1.1	Cre10.g452350.t1.1		4552550,4552949,4553338,4553741,4554072,4554389	4552730,4553010,4553467,4553829,4554124,4555246	
chr10	4557178	4560309	4557219	4559383	+	CSF1	Cre10.g452400.t1.2		4557178	4560309	Belongs to a large family of proteins found only in Chlamydomonas and Volvox
chr10	4560312	4574000	4561575	4573903	-	TIC110	Cre10.g452450.t1.2		4573768,4573418,4572904,4572640,4571741,4571309,4570935,4570542,4570159,4569799,4569549,4569112,4568693,4568208,4567741,4567245,4566497,4566054,4565813,4565534,4565260,4564985,4564577,4564166,4563875,4563541,4563253,4562917,4562533,4562180,4560312	4574000,4573598,4572983,4572735,4571854,4571389,4571003,4570643,4570241,4569888,4569598,4569289,4568801,4568275,4567792,4567415,4566655,4566167,4565909,4565616,4565337,4565040,4564640,4564301,4563942,4563645,4563337,4562987,4562643,4562254,4561755	Similar to 110 kDa putative component of the chloroplast inner membrane translocon (PMID: 15829604). Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr10	4574148	4581693	4574266	4581551	+	Cre10.g452500.t1.2	Cre10.g452500.t1.2		4574148,4574714,4575071,4575795,4576291,4576651,4576992,4577394,4577810,4578217,4578577,4578923,4579264,4579539,4580026,4580447,4580817,4581290	4574393,4574772,4575644,4575990,4576370,4576733,4577173,4577520,4577956,4578383,4578763,4579099,4579346,4579773,4580187,4580593,4581002,4581693	
chr10	4581798	4588609	4582095	4588374	+	HOP1	Cre10.g452550.t1.2		4581798,4582217,4582492,4582764,4583121,4583484,4583949,4584377,4584753,4585549,4585747,4586440,4586829,4587191,4587782,4588148	4582098,4582312,4582570,4582813,4583225,4583615,4584062,4584478,4584815,4585600,4586273,4586541,4586981,4587596,4587953,4588609	HORMA-domain containing meiosis-specific protein; binds DSBs and oligomerizes early during meiotic prophase, forming axial and lateral elements of the synaptonemal complex
chr10	4588627	4593217	4588937	4593015	-	Cre10.g452600.t1.2	Cre10.g452600.t1.2		4592736,4592463,4591876,4591605,4590451,4588627	4593217,4592582,4592205,4591667,4590549,4590281	
chr10	4593375	4597741	4593540	4597124	+	TIM17	Cre10.g452650.t1.2		4593375,4594214,4594820,4595963,4596420,4597025	4593726,4594312,4594930,4596098,4596547,4597741	Mitochondrial import inner membrane translocase subunit Tim17. Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane
chr10	4597788	4600991	4597956	4600057	+	Cre10.g452700.t1.2	Cre10.g452700.t1.2		4597788,4598188,4598440,4598791,4600057	4598095,4598262,4598465,4599157,4600991	
chr10	4597788	4599399	4597956	4599136	+	Cre10.g452700.t2.1	Cre10.g452700.t2.1		4597788,4598188,4598440,4598791	4598095,4598262,4598465,4599399	
chr10	4600999	4606347	4602416	4606083	-	Cre10.g452750.t1.2	Cre10.g452750.t1.2		4606080,4605582,4605051,4604786,4604264,4603800,4603214,4602849,4600999	4606347,4605775,4605133,4604865,4604377,4603906,4603310,4602943,4602654	
chr10	4608866	4611901	4608940	4611116	+	LCIB	Cre10.g452800.t1.2		4608866,4609311,4609445,4609621,4609985,4610441	4609191,4609359,4609487,4609778,4610155,4611901	low-CO2 inducible protein; homologous to LCIC with which it forms a complex; regulated by CCM1; LCIB is indispensable for the CO2-concentrating mechanism especially under low-CO2 conditions; localization is diffuse in chloroplast stroma under high-CO2 and low-CO2 conditions, but aggregated around pyrenoid as ring-like structure under very low-CO2 conditions; LCIB expression is also detected under HC conditions; Mutations in this gene include  pmp1 (Spalding et al., 1983 [PMID: 16663206]) and ad1 (Wang et al., [PMID:16777959]). Crystal structure of LCIB and LCIC harbor motifs bearing close resemblance to the active site of canonical beta type carbonic anhydrase, suggesting that LCIB/LCIC complex is required for the uptake of external CO2 into the stromal bicarbonate pool and the prevention of CO2 leakage from the pyrenoid.
chr10	4612304	4616017	4613134	4615964	-	Cre10.g452850.t1.1	Cre10.g452850.t1.1		4615907,4615765,4615579,4615099,4614565,4614190,4613548,4612304	4616017,4615842,4615662,4615396,4614914,4614289,4613992,4613255	
chr10	4616072	4620387	4616904	4620325	-	SMY2	Cre10.g452900.t1.2		4620248,4620103,4619486,4619011,4618631,4618314,4618006,4617687,4616072	4620387,4620142,4619702,4619135,4618742,4618463,4618122,4617777,4617568	
chr10	4620508	4633319	4620706	4632408	+	TRP1	Cre10.g452950.t1.1		4620508,4620977,4621469,4621864,4622250,4622653,4623125,4623445,4623807,4624225,4624669,4625127,4625671,4626154,4626571,4626929,4627209,4627942,4628540,4628879,4629246,4629647,4629961,4630449,4630873,4631268,4631481,4631874,4632267	4620767,4621121,4621499,4621926,4622360,4622697,4623178,4623512,4623936,4624375,4624823,4625189,4625730,4626313,4626688,4626997,4627281,4628043,4628593,4628923,4629395,4629721,4630036,4630549,4630977,4631342,4631609,4631969,4633319	Putative TRP-like ion channel protein, expressed in high light
chr10	4633368	4635896	4633679	4635324	+	Cre10.g453000.t1.2	Cre10.g453000.t1.2		4633368,4634143,4634568,4635096	4633915,4634301,4634670,4635896	
chr10	4636124	4639827	4637205	4639460	-	CYCM1	Cre10.g453050.t1.2		4639302,4639127,4638840,4638173,4636124	4639827,4639208,4638974,4638590,4638017	Volvocales specific cyclin; null-allele mutant was isolated (PMID 29743196)
chr10	4636124	4639604	4637205	4639460	-	CYCM1	Cre10.g453050.t2.1		4639302,4639127,4638840,4638173,4636124	4639604,4639208,4638974,4638590,4638017	Volvocales specific cyclin; null-allele mutant was isolated (PMID 29743196)
chr10	4643387	4653159	4643617	4652289	+	Cre10.g453100.t1.2	Cre10.g453100.t1.2		4643387,4643763,4644156,4644466,4644889,4645405,4645796,4646300,4647071,4647545,4648009,4648453,4649220,4649707,4650214,4650748,4651250,4651533,4652058	4643673,4643930,4644236,4644530,4644969,4645442,4645860,4646444,4647236,4647611,4648105,4648605,4649321,4649791,4650358,4650871,4651307,4651828,4653159	
chr10	4643387	4653159	4643617	4652289	+	Cre10.g453100.t2.1	Cre10.g453100.t2.1		4643387,4643763,4644156,4644466,4644889,4645405,4645796,4646300,4647071,4647545,4648009,4648453,4649220,4649707,4650214,4650748,4651250,4651533,4652067	4643673,4643930,4644236,4644530,4644969,4645442,4645860,4646444,4647236,4647611,4648105,4648605,4649321,4649791,4650358,4650871,4651307,4651828,4653159	
chr10	4658298	4661906	4658448	4661505	+	Cre10.g453200.t1.1	Cre10.g453200.t1.1		4658298,4658910,4659351,4659531,4659927,4660395	4658794,4659215,4659437,4659703,4660103,4661906	
chr10	4658298	4662289	4658448	4661505	+	Cre10.g453200.t2.1	Cre10.g453200.t2.1		4658298,4658910,4659351,4659531,4659927,4660395	4658794,4659215,4659437,4659703,4660103,4662289	
chr10	4662335	4666667	4663345	4666277	-	Cre10.g453250.t1.2	Cre10.g453250.t1.2		4666189,4665147,4663720,4662335	4666667,4666036,4664354,4663418	
chr10	4666722	4670207	4667687	4670014	-	Cre10.g453300.t1.1	Cre10.g453300.t1.1		4668355,4668078,4666722	4670207,4668209,4667855	
chr10	4670337	4673977	4670546	4673894	-	Cre10.g453350.t1.2	Cre10.g453350.t1.2		4673642,4673307,4672864,4671812,4670929,4670337	4673977,4673557,4673056,4672497,4671542,4670698	
chr10	4674102	4692077	4675817	4692001	-	MSC4	Cre10.g453400.t1.1		4691940,4688119,4687602,4686324,4685810,4685212,4684703,4682461,4681520,4681097,4680859,4680497,4680151,4679768,4679443,4679003,4678593,4678002,4677489,4677229,4677003,4676671,4674102	4692077,4691780,4687751,4686431,4685916,4685356,4684795,4684410,4682282,4681179,4680928,4680611,4680250,4679863,4679507,4679083,4678718,4678097,4677573,4677319,4677040,4676754,4676345	protein of unknown function with mechanosensitive ion channel (MSC) like domain
chr10	4692240	4693599	4692355	4692689	+	SMP4	Cre10.g453450.t1.2		4692240	4693599	putative Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2)
chr10	4694568	4700659	4694728	4699820	+	Cre10.g453500.t1.2	Cre10.g453500.t1.2		4694568,4695579,4696079,4696667,4696981	4695211,4695725,4696402,4696773,4700659	
chr10	4701348	4705629	4701839	4704705	+	Cre10.g453550.t1.1	Cre10.g453550.t1.1		4701348,4701776	4701524,4705629	
chr10	4705915	4710295	4707544	4710215	-	DES	Cre10.g453600.t1.2		4709249,4708914,4708332,4705915	4710295,4709021,4708442,4707790	cytochrome b5 domain-fused desaturase with omega 13-desaturase activity; a front-end desaturase involved in production of pinolenic and coniferonic acids
chr10	4705915	4710547	4707544	4710215	-	DES	Cre10.g453600.t2.1		4709249,4708914,4708332,4705915	4710547,4709021,4708442,4707790	cytochrome b5 domain-fused desaturase with omega 13-desaturase activity; a front-end desaturase involved in production of pinolenic and coniferonic acids
chr10	4711048	4729289	4711328	4729009	+	Cre10.g453650.t1.2	Cre10.g453650.t1.2		4711048,4711601,4711894,4712167,4712713,4713124,4713486,4714049,4714514,4715142,4715388,4716049,4716554,4716973,4717421,4718048,4718635,4719224,4719504,4719791,4720027,4720399,4720580,4720973,4721346,4722105,4722833,4723230,4723645,4724028,4725185,4725670,4726086,4726565,4727111,4727498,4727989	4711448,4711713,4711965,4712326,4712867,4713175,4713584,4714156,4714921,4715210,4715742,4716251,4716644,4717206,4717855,4718382,4718729,4719275,4719574,4719833,4720092,4720461,4720647,4721102,4721746,4722328,4722918,4723449,4723751,4724629,4725344,4725744,4726217,4726726,4727173,4727575,4729289	
chr10	4729408	4732559	4729595	4731780	+	Cre10.g453700.t1.1	Cre10.g453700.t1.1		4729408,4731333,4731612	4731185,4731467,4732559	
chr10	4732618	4735866	4732645	4734946	+	Cre10.g453707.t1.1	Cre10.g453707.t1.1		4732618,4734399,4734778	4734262,4734533,4735866	
chr10	4735988	4740269	4736387	4739396	+	Cre10.g453728.t1.1	Cre10.g453728.t1.1		4735988,4737631,4738013,4739396	4737494,4737765,4738995,4740269	
chr10	4740908	4743969	4740953	4742926	+	Cre10.g453750.t1.1	Cre10.g453750.t1.1		4740908,4742719	4742582,4743969	
chr10	4744148	4746969	4744260	4746449	+	Cre10.g453766.t1.1	Cre10.g453766.t1.1		4744148,4744454,4745902,4746281	4744265,4745765,4746036,4746969	
chr10	4783078	4785869	4783465	4785247	+	Cre10.g453782.t1.1	Cre10.g453782.t1.1		4783078,4784700,4785079	4784563,4784834,4785869	
chr10	4785958	4789149	4785990	4788417	+	CTPA3	Cre10.g453800.t1.1		4785958,4787720,4788051	4787583,4787854,4789149	C-terminal peptidase, Tail-specific peptidase, possibly the D1 processing peptidase; contains a PDZ domain
chr10	4789198	4797360	4789329	4795194	+	Cre10.g453807.t1.2	Cre10.g453807.t1.2		4789198,4789558,4790324,4790972,4791403,4791833,4792202,4792478,4793005,4793248,4793789,4794484,4794958	4789462,4789660,4790476,4791055,4791493,4791922,4792255,4792780,4793031,4793376,4793989,4794613,4797360	
chr10	4789198	4797360	4789329	4795194	+	Cre10.g453807.t2.1	Cre10.g453807.t2.1		4789198,4789558,4790324,4790972,4791403,4791833,4792202,4792478,4793248,4793789,4794484,4794958	4789462,4789660,4790476,4791055,4791493,4791922,4792255,4792780,4793376,4793989,4794613,4797360	
chr10	4797898	4801487	4798669	4800730	-	Cre10.g453850.t1.2	Cre10.g453850.t1.2		4800642,4797898	4801487,4800477	
chr10	4801640	4811207	4802489	4811040	-	CYN71	Cre10.g453900.t1.2		4810920,4810736,4810212,4808506,4807997,4807393,4807038,4806621,4806293,4805849,4805646,4805376,4804920,4804610,4804312,4803823,4803463,4802928,4801640	4811207,4810831,4810332,4808567,4808077,4807497,4807110,4806772,4806442,4805989,4805685,4805422,4805053,4804704,4804370,4803967,4803589,4803027,4802570	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; similar to AtCYP71; null-allele mutant was isolated (PMID 29743196)
chr10	4811618	4826539	4811794	4825186	+	Cre10.g454000.t1.2	Cre10.g454000.t1.2		4811618,4812276,4812799,4814375,4816403,4816977,4817570,4818225,4818667,4819508,4819876,4820440,4820858,4821369,4823296,4824763	4812131,4812499,4814205,4816042,4816567,4817111,4817763,4818414,4819146,4819618,4820135,4820545,4821064,4822979,4824549,4826539	null-allele mutant was isolated (PMID 29743196)
chr10	4826628	4832389	4826662	4832056	+	Cre10.g454025.t1.1	Cre10.g454025.t1.1		4826628,4827317,4827863,4828285,4828583,4828966,4830210,4830627,4830973	4826911,4827640,4827991,4828347,4828701,4829516,4830322,4830683,4832389	
chr10	4826628	4829939	4826662	4829537	+	Cre10.g454025.t2.1	Cre10.g454025.t2.1		4826628,4827317,4827863,4828285,4828583,4828966	4826911,4827640,4827991,4828347,4828701,4829939	
chr10	4829988	4832389	4830019	4832056	+	Cre10.g454025.t3.1	Cre10.g454025.t3.1		4829988,4830210,4830627,4830973	4830044,4830322,4830683,4832389	
chr10	4832442	4837127	4832476	4836710	+	Cre10.g454100.t1.2	Cre10.g454100.t1.2		4832442,4832930,4833683,4834083,4834485,4835027,4835420,4835873,4836261,4836446	4832588,4833023,4833782,4834148,4834551,4835121,4835527,4835980,4836317,4837127	
chr10	4837196	4839817	4837778	4839586	-	SAT3	Cre10.g454150.t1.2		4839533,4839297,4838760,4838300,4837196	4839817,4839362,4838853,4838393,4837981	
chr10	4841152	4844777	4842193	4844602	-	Cre10.g454200.t1.2	Cre10.g454200.t1.2		4844338,4843846,4843441,4843027,4842591,4841152	4844777,4844026,4843532,4843164,4842683,4842295	
chr10	4845933	4848869	4846081	4847850	+	FKB16-9	Cre10.g454250.t1.2		4845933,4846506,4846948,4847309,4847693	4846362,4846653,4846989,4847403,4848869	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); possibly targeted to thylakoid lumen (by homology to At5g45680 and presence of a RR motif); [PMID: 15701785]
chr10	4848918	4855739	4849009	4855224	+	Cre10.g454300.t1.1	Cre10.g454300.t1.1		4848918,4849129,4849856,4850275,4850791,4851205,4851671,4851954,4853167,4853691,4854176,4855020	4849034,4849266,4849954,4850477,4850910,4851478,4851745,4852993,4853429,4853842,4854732,4855739	
chr10	4856788	4869501	4857048	4868450	+	Cre10.g454350.t1.1	Cre10.g454350.t1.1		4856788,4857178,4857375,4857710,4858261,4859754,4863899	4857095,4857230,4857474,4858025,4859576,4863564,4869501	
chr10	4870787	4877260	4871181	4876867	+	Cre10.g454400.t1.1	Cre10.g454400.t1.1		4870787,4873315,4873612,4873957,4874591,4875245,4875813,4876354,4876735	4872969,4873414,4873721,4874370,4874698,4875412,4875941,4876464,4877260	
chr10	4878047	4885560	4878513	4882868	+	Cre10.g454450.t1.1	Cre10.g454450.t1.1		4878047,4878760,4879210,4879437,4879702,4880771,4881760,4882299,4882595	4878639,4878838,4879302,4879529,4880027,4880929,4882005,4882379,4885560	
chr10	4878047	4885560	4878513	4883720	+	Cre10.g454450.t2.1	Cre10.g454450.t2.1		4878047,4878760,4879210,4879437,4879702,4880771,4881760,4882299,4882595,4883661	4878639,4878838,4879302,4879529,4880027,4880929,4882005,4882379,4882712,4885560	
chr10	4885571	4887166	4886763	4887049	-	Cre10.g454500.t1.1	Cre10.g454500.t1.1		4886927,4885571	4887166,4886854	
chr10	4887217	4888486	4887521	4888334	-	COX19	Cre10.g454550.t2.1		4888241,4887915,4887217	4888486,4888012,4887618	Similar to Cox19 protein, involved in assembly of cytochrome oxidase PMID: 15710684
chr10	4885630	4888486	4886591	4888334	-	COX19	Cre10.g454550.t1.2		4888241,4887915,4887474,4885630	4888486,4888012,4887618,4886591	Similar to Cox19 protein, involved in assembly of cytochrome oxidase PMID: 15710684
chr10	4888584	4892266	4888716	4890762	+	Cre10.g454600.t1.1	Cre10.g454600.t1.1		4888584,4889883	4889382,4892266	
chr10	4892490	4895816	4894405	4895639	-	RPC5	Cre10.g454650.t1.2		4892490	4895816	
chr10	4895977	4900546	4896176	4900493	-	Cre10.g454700.t1.2	Cre10.g454700.t1.2		4900463,4900242,4900047,4899684,4899295,4898475,4898108,4897690,4895977	4900546,4900387,4900176,4899977,4899435,4899078,4898243,4897778,4897303	null-allele mutant was isolated (PMID 29743196)
chr10	4900660	4906766	4901240	4906617	-	Cre10.g454734.t1.1	Cre10.g454734.t1.1		4906443,4906155,4905642,4905294,4904937,4904250,4903694,4903503,4900660	4906766,4906358,4905800,4905401,4905014,4904345,4903770,4903545,4902911	
chr10	4900660	4906766	4901240	4906617	-	Cre10.g454734.t2.1	Cre10.g454734.t2.1		4906443,4906155,4905642,4905294,4904937,4904250,4900660	4906766,4906358,4905800,4905401,4905014,4904345,4902911	
chr10	4906876	4910177	4906998	4909313	+	Cre10.g454800.t1.2	Cre10.g454800.t1.2		4906876,4907184,4908004,4908538,4909292	4907035,4907352,4908130,4908792,4910177	
chr10	4910181	4919296	4912101	4918410	-	Cre10.g454850.t1.2	Cre10.g454850.t1.2		4918894,4917855,4917414,4916487,4915363,4914900,4910181	4919296,4918562,4917687,4917121,4915410,4915002,4914578	
chr10	4919397	4934947	4919472	4932450	+	PDE29	Cre10.g454900.t1.2		4919397,4920339,4920631,4921008,4921440,4922031,4922721,4922988,4923576,4923968,4924681,4924979,4925452,4925844,4927975,4928394,4928685,4929176,4929531,4930101,4930498,4930943,4931394,4931854	4919568,4920416,4920681,4921172,4921638,4922308,4922807,4923299,4923625,4924070,4924762,4925075,4925515,4927655,4928084,4928441,4928796,4929223,4929615,4930216,4930775,4931072,4931568,4934947	null-allele mutant was isolated (PMID 29743196)
chr10	4934956	4937176	4935955	4937155	-	Cre10.g454951.t1.1	Cre10.g454951.t1.1		4936832,4934956	4937176,4935955	
chr10	4937277	4943158	4937385	4941525	+	Cre10.g455000.t1.2	Cre10.g455000.t1.2		4937277,4937829,4938254,4938614,4938722,4939028,4939353,4939719,4939902,4940297,4940652,4941118,4941453	4937485,4937927,4938280,4938631,4938924,4939226,4939555,4939741,4940107,4940584,4940865,4941268,4943158	
chr10	4937277	4943158	4937385	4941525	+	Cre10.g455000.t2.1	Cre10.g455000.t2.1		4937277,4937829,4938254,4938614,4938722,4939028,4939353,4939719,4939902,4940297,4940757,4941118,4941453	4937485,4937927,4938280,4938631,4938924,4939226,4939555,4939741,4940107,4940584,4940865,4941268,4943158	
chr10	4943511	4947256	4944386	4946768	-	Cre10.g455050.t1.2	Cre10.g455050.t1.2		4947240,4945706,4943511	4947256,4946938,4945571	
chr10	4945281	4947256	4945303	4946768	-	Cre10.g455050.t2.1	Cre10.g455050.t2.1		4947240,4945706,4945390,4945281	4947256,4946938,4945571,4945313	
chr10	4958804	4963366	4959646	4962671	-	SOUL6	Cre10.g455100.t1.1		4963258,4962649,4962266,4962049,4961638,4961243,4960861,4960106,4958804	4963366,4962746,4962330,4962102,4961736,4961356,4960941,4960522,4959781	
chr10	4963501	4966866	4966035	4966806	-	Cre10.g455150.t1.2	Cre10.g455150.t1.2		4966707,4966239,4963501	4966866,4966377,4966055	
chr10	4966977	4982028	4967327	4981217	+	Cre10.g455190.t1.1	Cre10.g455190.t1.1		4966977,4967601,4968487,4968978,4969535,4969972,4970386,4970609,4971167,4971602,4972285,4972797,4973258,4973612,4973999,4974900,4975460,4976106,4976540,4977016,4977683,4978043,4978391,4978797,4979419,4980720,4980983	4967375,4967684,4968573,4969022,4969627,4970060,4970438,4970799,4971386,4971712,4972553,4972913,4973314,4973701,4974700,4974992,4975504,4976201,4976693,4977305,4977748,4978129,4978460,4979074,4979526,4980776,4982028	
chr10	4982167	4987771	4982306	4987266	+	CSR4	Cre10.g455231.t1.2		4982167,4983204,4983839,4984170,4984644,4985016,4985361,4985740,4986213,4986558,4986842,4987107	4982915,4983377,4983950,4984293,4984719,4985057,4985438,4985839,4986282,4986615,4986907,4987771	
chr10	4987808	4992876	4988303	4992523	-	Cre10.g455250.t1.2	Cre10.g455250.t1.2		4991997,4991354,4990793,4990479,4990080,4989574,4989220,4988720,4987808	4992876,4991700,4991099,4990567,4990177,4989792,4989307,4988782,4988489	
chr10	4992977	4994247	4993287	4993672	+	SMP1	Cre10.g455300.t1.2		4992977	4994247	putative sm protein 1, small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3)
chr10	4994297	5003292	4994439	5002656	+	Cre10.g455350.t1.2	Cre10.g455350.t1.2		4994297,4994786,4995277,4995712,4996377,4996912,4997347,4997956,5001268,5001709,5002014	4994546,4994911,4995428,4996121,4996544,4997127,4997666,5000863,5001345,5001759,5003292	
chr10	5003406	5006667	5003553	5006196	+	RME2	Cre10.g455400.t1.2		5003406,5003509,5003787,5004430,5005202,5005577,5005864	5003437,5003559,5004257,5004909,5005372,5005649,5006667	Putative RNA methylase with conserved N-6 adenine-specific DNA methylase site
chr10	5006676	5011245	5007389	5011124	-	Cre10.g455451.t1.1	Cre10.g455451.t1.1		5010647,5010263,5009687,5009239,5008793,5008144,5007818,5006676	5011245,5010382,5009770,5009304,5008867,5008206,5007856,5007521	
chr10	5012396	5015025	5012585	5014422	+	Cre10.g455500.t1.2	Cre10.g455500.t1.2		5012396,5012903,5013052,5013706,5014016,5014404	5012816,5012960,5013551,5013850,5014218,5015025	Global transcription factor group E, containing bromodomains.  May be a histone acetyltransferase.  ChromoDB GTE341
chr10	5016266	5019957	5016398	5019472	+	Cre10.g455551.t1.1	Cre10.g455551.t1.1		5016266,5017772,5018150,5018812,5019144,5019472	5017509,5017905,5018514,5018914,5019224,5019957	
chr10	5020046	5029227	5020174	5028059	+	ORC1	Cre10.g455600.t1.1		5020046,5020543,5021403,5022092,5022345,5022676,5023211,5023642,5024055,5024464,5024792,5025074,5025517,5025990,5026332,5026926,5027458,5027993	5020286,5021153,5021636,5022157,5022407,5022837,5023450,5023767,5024235,5024579,5024896,5025181,5025626,5026068,5026526,5027063,5027625,5029227	Homologous to eukaryotic ORC1, DNA replication control protein. s-lethal mutations block DNA replication (PMID 25336509)
chr10	5029286	5033881	5029819	5032388	+	Cre10.g455625.t1.1	Cre10.g455625.t1.1		5029286,5030647,5031980	5030240,5031830,5033881	
chr10	5034122	5036815	5034678	5036570	-	Cre10.g455650.t1.2	Cre10.g455650.t1.2		5036383,5035515,5034122	5036815,5036127,5035234	
chr10	5037160	5045085	5038483	5044815	-	PAP5	Cre10.g455700.t1.2		5043339,5042457,5042007,5041072,5040616,5040046,5039721,5039292,5037160	5045085,5043193,5042203,5041694,5040764,5040247,5039834,5039378,5038978	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; conserved in green algae
chr10	5045236	5063727	5045453	5062404	+	Cre10.g455750.t1.1	Cre10.g455750.t1.1		5045236,5046126,5046398,5047316,5048065,5048636,5049002,5049947,5050285,5050582,5050922,5051436,5051822,5052082,5052422,5053093,5053472,5053852,5054169,5054722,5055094,5055339,5055739,5056226,5056504,5057081,5057360,5057729,5058744,5059113,5059930,5060189,5060566,5060876,5061134,5061320,5061579,5061937,5062376	5045743,5046235,5047128,5047684,5048328,5048776,5049724,5050115,5050446,5050661,5050978,5051603,5051908,5052294,5052474,5053195,5053541,5053998,5054313,5054803,5055147,5055523,5056012,5056289,5056919,5057211,5057423,5058513,5058869,5059668,5060028,5060269,5060686,5060979,5061155,5061384,5061667,5062128,5063727	SNF2-related protein.  ChromDB CHR3415
chr10	5063730	5068225	5063881	5067904	-	Cre10.g455800.t1.1	Cre10.g455800.t1.1		5067830,5067481,5067077,5065665,5064343,5063730	5068225,5067649,5067266,5066797,5065374,5064061	
chr10	5063730	5068225	5063881	5067904	-	Cre10.g455800.t2.1	Cre10.g455800.t2.1		5067830,5067481,5067077,5065665,5064343,5063730	5068225,5067649,5067266,5066794,5065374,5064061	
chr10	5068410	5076985	5069040	5076893	-	MCM7	Cre10.g455850.t1.2		5076853,5076652,5076362,5076039,5075604,5075097,5074701,5074091,5073566,5073035,5072646,5072298,5071906,5071517,5071286,5070928,5070518,5070107,5069819,5069412,5068410	5076985,5076734,5076421,5076209,5075642,5075282,5074835,5074189,5073702,5073227,5072742,5072413,5072019,5071617,5071331,5071034,5070648,5070258,5069887,5069549,5069160	Homology to MCM7 DNA replication protein
chr10	5077416	5080777	5078144	5080747	+	Cre10.g455900.t1.2	Cre10.g455900.t1.2		5077416,5079317,5079690,5080081,5080554	5079080,5079370,5079836,5080277,5080777	
chr10	5080780	5084575	5082119	5084451	-	FAP407	Cre10.g455950.t1.1		5084072,5083549,5083176,5082809,5082449,5080780	5084575,5083625,5083309,5082957,5082624,5082161	AGG3 Paralog Similar to Quinone Reductase
chr10	5084630	5088065	5085480	5087692	-	FAP191	Cre10.g456000.t1.2		5087626,5087340,5087071,5086725,5086231,5085851,5084630	5088065,5087541,5087147,5086852,5086379,5086026,5085522	Flagellar Associated Protein similar to quinone reductase; one of four highly similar, tandemly-repeated flavodoxins. Other proteins in cluster include the flagellar associated proteins FAP142/AGG3, and AGG4. Found in the flagellar proteome [PMID: 159988]
chr10	5089898	5092265	5090227	5091589	-	Cre10.g456050.t2.1	Cre10.g456050.t2.1		5091517,5091378,5091210,5090850,5090485,5089898	5092265,5091419,5091280,5091052,5090660,5090269	Flagellar Flavodoxine
chr10	5088120	5092265	5090227	5091589	-	Cre10.g456050.t1.2	Cre10.g456050.t1.2		5091517,5091378,5091210,5090850,5090485,5088120	5092265,5091419,5091280,5091052,5090660,5090269	Flagellar Flavodoxine
chr10	5094450	5097067	5095420	5096994	-	AGG3	Cre10.g456100.t1.2		5096922,5096754,5096467,5096097,5095725,5094450	5097067,5096795,5096537,5096299,5095900,5095462	One of four highly similar, tandemly-repeated flavodoxins. Other proteins in cluster include the flagellar associated proteins FAP191, and AGG4. Found in the flagellar proteome as FAP142 [PMID: 15998802]; Associated with detergent-resistant membranes and involved in phototaxis [PMID: 16753570]; involved in phototaxis
chr10	5097326	5103739	5097757	5103207	+	HLD3	Cre10.g456150.t1.2		5097326,5098670,5099319,5099694,5100103,5101165,5101467,5101920,5102402,5102733,5103021	5097820,5098736,5099389,5099786,5100171,5101259,5101634,5102049,5102503,5102786,5103739	
chr10	5104136	5106979	5104264	5106916	+	RPS24	Cre10.g456200.t1.2		5104136,5104416,5104538,5104777,5106359,5106905	5104336,5104457,5104618,5104866,5106458,5106979	Cytosolic 40S small ribosomal subunit protein S24
chr10	5105110	5105395	5105136	5105326	-	Cre10.g456226.t1.1	Cre10.g456226.t1.1		5105110	5105395	
chr10	5108956	5111954	5109115	5110875	+	TRX25	Cre10.g456250.t1.2		5108956,5109875,5110202,5110505,5110782	5109358,5109968,5110302,5110618,5111954	null-allele mutant was isolated (PMID 29743196)
chr10	5112571	5119965	5113227	5119331	-	MBD1	Cre10.g456300.t1.1		5119115,5118563,5115962,5115416,5115086,5114713,5114232,5112571	5119965,5118978,5118333,5115582,5115147,5114898,5114316,5113881	Gene product is required for accumulation of the chloroplast psbD mRNA - originally NAC2 [PMID: 10880449] (No Accumulation of CP47)
chr10	5120175	5127785	5120648	5127541	-	KIN7-2	Cre10.g456350.t1.2		5126917,5126708,5126379,5126019,5125743,5125447,5125074,5124334,5124056,5123446,5123130,5122835,5122606,5122332,5122160,5121797,5121397,5120175	5127785,5126795,5126563,5126208,5125888,5125596,5125306,5124973,5124208,5123933,5123327,5122997,5122683,5122464,5122218,5122021,5121649,5121205	kinesin-7 family
chr10	5127896	5133272	5128117	5132983	+	DAT1	Cre10.g456400.t1.1		5127896,5128247,5128397,5128714,5129210,5129480,5129755,5130082,5130339,5130683,5131001,5131332,5131572,5131804,5132104	5128164,5128284,5128506,5128834,5129334,5129551,5129874,5130181,5130411,5130823,5131131,5131396,5131694,5131914,5133272	related to dicarboxylate amino acids cation sodium proton (DAACS) transporter; DAACS family transporter absent in plants
chr10	5127896	5133272	5128117	5132983	+	DAT1	Cre10.g456400.t2.1		5127896,5128250,5128397,5128714,5129210,5129480,5129755,5130082,5130339,5130683,5131001,5131332,5131572,5131804,5132104	5128164,5128284,5128506,5128834,5129334,5129551,5129874,5130181,5130411,5130823,5131131,5131396,5131694,5131914,5133272	related to dicarboxylate amino acids cation sodium proton (DAACS) transporter; DAACS family transporter absent in plants
chr10	5134494	5136937	5135192	5136277	+	Cre10.g456420.t1.1	Cre10.g456420.t1.1		5134494,5135497,5136238	5135214,5135924,5136937	
chr10	5135436	5136937	5135594	5135975	+	Cre10.g456420.t2.1	Cre10.g456420.t2.1		5135436,5135925	5135841,5136937	
chr10	5134654	5135387	5134750	5134964	+	Cre10.g456440.t2.1	Cre10.g456440.t2.1		5134654	5135387	
chr10	5134494	5135387	5134750	5134964	+	Cre10.g456440.t1.2	Cre10.g456440.t1.2		5134494	5135387	
chr10	5140446	5145330	5140695	5143717	+	Cre10.g456480.t1.1	Cre10.g456480.t1.1		5140446,5143393	5142936,5145330	
chr10	5146166	5155447	5146274	5152806	+	Cre10.g456500.t1.1	Cre10.g456500.t1.1		5146166,5148993,5150246	5148799,5150024,5155447	
chr10	5155806	5157017	5156252	5156663	+	Cre10.g456550.t1.1	Cre10.g456550.t1.1		5155806,5156175,5156627	5156090,5156447,5157017	
chr10	5157096	5159665	5157138	5158424	+	CSC5	Cre10.g456554.t1.2		5157096,5157511,5158119	5157273,5157862,5159665	function unknown; homologs in Gonium, not Volvox
chr10	5160276	5171461	5160520	5170862	+	Cre10.g456600.t1.1	Cre10.g456600.t1.1		5160276,5160599,5160811,5161241,5161712,5162113,5162565,5162799,5163056,5163342,5163650,5163897,5164103,5164389,5164777,5165025,5165321,5165645,5166030,5166339,5166638,5166855,5167004,5167355,5167643,5167885,5168237,5168559,5169047,5169437,5169800,5170014	5160523,5160685,5160929,5161277,5161931,5162180,5162663,5162849,5163136,5163498,5163765,5163957,5164251,5164519,5164861,5165134,5165438,5165814,5166155,5166453,5166702,5166891,5167144,5167473,5167719,5168006,5168346,5168748,5169187,5169553,5169872,5171461	null-allele mutant was isolated (PMID 29743196)
chr10	5171490	5174913	5172317	5174787	-	AOF6	Cre10.g456650.t1.1		5174593,5174009,5171490	5174913,5174318,5173700	Putative flavin-containing amine oxidase
chr10	5175384	5180606	5175701	5179147	+	CASC3	Cre10.g456700.t1.2		5175384,5175679,5176103,5176540,5176983,5177886,5179033	5175473,5175912,5176328,5176663,5177584,5178771,5180606	Contains CASC3/Barentsz eIF4AIII binding domain involved in post-transcriptional regulation of mRNA in metazoa
chr10	5180737	5183457	5180845	5182466	+	Cre10.g456750.t1.2	Cre10.g456750.t1.2		5180737,5181174,5181440,5181729,5182093,5182345	5180909,5181264,5181583,5181858,5182223,5183457	Catalyzes the reduction of dehydroascorbate to ascorbate in environmental stress adaptation. Similar to Arabidopsis At1g1957.1
chr10	5183634	5192321	5183934	5191312	+	Cre10.g456800.t1.1	Cre10.g456800.t1.1		5183634,5184228,5184479,5184708,5185019,5185409,5185619,5186376,5186889,5187254,5187693,5188154,5188899,5189533,5189857,5190333	5184036,5184292,5184539,5184752,5185250,5185471,5186188,5186728,5187047,5187466,5187857,5188663,5189207,5189672,5190006,5192321	
chr10	5192624	5196445	5192881	5196397	+	Cre10.g456851.t1.1	Cre10.g456851.t1.1		5192624,5193535,5193780,5195097,5195472,5195854,5196397	5193406,5193609,5193863,5195246,5195554,5196243,5196445	
chr10	5196454	5206173	5197662	5205736	-	Cre10.g456900.t1.2	Cre10.g456900.t1.2		5205608,5205127,5204689,5204299,5203883,5203585,5203214,5202760,5201911,5201489,5201181,5200692,5200275,5199866,5198350,5198111,5196454	5206173,5205349,5204823,5204370,5203984,5203629,5203258,5202916,5202080,5201594,5201294,5200946,5200405,5200003,5198409,5198212,5197854	
chr10	5206228	5221353	5206318	5220962	-	CEP10	Cre10.g456950.t1.1		5220876,5220526,5220281,5219939,5219512,5219186,5218898,5218594,5218409,5217987,5217655,5217204,5216975,5216328,5216162,5215835,5215383,5214958,5214735,5214362,5213890,5213570,5213262,5212860,5212477,5212165,5211830,5211410,5210820,5210509,5210165,5209829,5209373,5208532,5208202,5207706,5207304,5206228	5221353,5220607,5220382,5220053,5219693,5219316,5218933,5218700,5218444,5218114,5217741,5217513,5217086,5216832,5216196,5215968,5215565,5215107,5214805,5214496,5214052,5213703,5213368,5212971,5212585,5212278,5211984,5211579,5211123,5210609,5210315,5209949,5209639,5209237,5208295,5208020,5207469,5207124	Cysteine-type endopeptidase, papain type
chr10	5221664	5226455	5221772	5226192	+	CYN65	Cre10.g457000.t1.1		5221664,5222257,5222722,5223039,5223251,5224302,5224675,5224981,5225226,5225673,5225934	5221839,5222513,5222874,5223084,5223974,5224434,5224765,5225051,5225355,5225794,5226455	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; N-terminal domain contains modified RING Zinc-finger (U-box); no targeting peptide, probably cytosolic; similar to AtCYP65
chr10	5226458	5230753	5227083	5230586	-	Cre10.g457050.t1.1	Cre10.g457050.t1.1		5230513,5230238,5229863,5229182,5228949,5228646,5228278,5227900,5226458	5230753,5230270,5230057,5229666,5229068,5228818,5228501,5228167,5227636	null-allele mutant was isolated (PMID 29743196)
chr10	5230858	5233833	5231453	5233780	-	Cre10.g457100.t1.2	Cre10.g457100.t1.2		5233715,5233052,5232744,5232542,5232149,5231794,5230858	5233833,5233277,5232872,5232585,5232287,5231952,5231612	
chr10	5233934	5244535	5234121	5241792	+	Cre10.g457150.t1.2	Cre10.g457150.t1.2		5233934,5234554,5234963,5235341,5235634,5235926,5236324,5236684,5236990,5237326,5237582,5238195,5238498,5238975,5239372,5239750,5240121,5240603,5241224,5241459	5234228,5234671,5235091,5235475,5235691,5235975,5236422,5236779,5237078,5237386,5238038,5238296,5238655,5239183,5239549,5239978,5240420,5240901,5241286,5244535	
chr10	5244584	5247955	5244643	5245737	+	Cre10.g457194.t1.2	Cre10.g457194.t1.2		5244584,5244727,5244950,5245149,5245503	5244666,5244844,5244998,5245282,5247955	
chr10	5244584	5247955	5244643	5245503	+	Cre10.g457194.t2.1	Cre10.g457194.t2.1		5244584,5244727,5244950,5245149,5245335	5244666,5244844,5244998,5245282,5247955	
chr10	5244584	5247955	5244643	5245712	+	Cre10.g457194.t3.1	Cre10.g457194.t3.1		5244584,5244727,5244950,5245149,5245697	5244666,5244844,5244998,5245282,5247955	
chr10	5247514	5250395	5248549	5249474	+	Cre10.g457228.t1.1	Cre10.g457228.t1.1		5247514,5248504,5248926,5249474	5248310,5248621,5249059,5250395	
chr10	5248004	5250395	5248549	5249474	+	Cre10.g457228.t2.1	Cre10.g457228.t2.1		5248004,5248926,5249474	5248621,5249059,5250395	
chr10	5250398	5252093	5250501	5251140	-	Cre10.g457262.t1.1	Cre10.g457262.t1.1		5251331,5250742,5250398	5252093,5251147,5250532	
chr10	5252624	5258132	5253435	5257706	+	Cre10.g457297.t1.1	Cre10.g457297.t1.1		5252624,5252758,5252984,5254377,5254870,5255284,5256188,5256664	5252639,5252868,5254206,5254751,5255073,5255994,5256270,5258132	null-allele mutant was isolated (PMID 29743196)
chr10	5258997	5276203	5259977	5275380	-	Cre10.g457331.t1.1	Cre10.g457331.t1.1		5275948,5275780,5275571,5275353,5275092,5274862,5274570,5274182,5273845,5273628,5273374,5273009,5272662,5272355,5272042,5271852,5271670,5271390,5271125,5270794,5270412,5270094,5269764,5269517,5269270,5268754,5268526,5267930,5267645,5267098,5264873,5264677,5264381,5264019,5263792,5263525,5263269,5261898,5261701,5261549,5261283,5260899,5260619,5260398,5258997	5276203,5275837,5275624,5275418,5275159,5274913,5274685,5274336,5273996,5273756,5273462,5273200,5272857,5272521,5272203,5271941,5271751,5271576,5271258,5270874,5270491,5270209,5269993,5269648,5269386,5269130,5268604,5268421,5267816,5267495,5266975,5264778,5264542,5264183,5263899,5263632,5263403,5263170,5261738,5261601,5261439,5261084,5260738,5260547,5260253	
chr10	5276251	5295153	5276986	5294805	-	Cre10.g457400.t1.1	Cre10.g457400.t1.1		5294746,5294609,5294356,5294055,5293716,5293278,5293068,5292827,5292346,5291991,5291646,5291340,5291018,5290789,5290584,5290292,5290059,5289797,5289431,5289118,5288853,5288637,5288393,5288073,5287699,5287417,5287101,5286755,5286360,5285569,5285301,5283152,5282802,5281989,5281773,5281498,5281167,5280943,5280667,5280394,5279501,5279218,5278908,5278643,5278312,5278151,5277956,5277755,5277525,5277307,5276251	5295153,5294678,5294409,5294182,5293770,5293402,5293110,5292873,5292587,5292142,5291774,5291428,5291209,5290879,5290688,5290458,5290220,5289886,5289512,5289304,5288986,5288717,5288472,5288215,5287937,5287548,5287214,5286930,5286549,5286213,5285475,5285176,5283064,5282669,5281864,5281642,5281331,5281062,5280777,5280528,5280211,5279340,5278969,5278784,5278470,5278195,5278030,5277809,5277619,5277369,5277187	
chr10	5295499	5299133	5296733	5298876	-	Cre10.g457450.t1.1	Cre10.g457450.t1.1		5298574,5298312,5298059,5297793,5297226,5295499	5299133,5298407,5298182,5297885,5297429,5297096	
chr10	5299264	5302136	5299515	5301505	+	Cre10.g457500.t1.1	Cre10.g457500.t1.1		5299264,5299899,5300390,5300733,5301033,5301382	5299518,5300133,5300514,5300893,5301201,5302136	
chr10	5302657	5306298	5303358	5306114	-	ATG18	Cre10.g457550.t1.2		5305956,5305757,5305499,5305164,5304931,5304758,5304390,5303993,5302657	5306298,5305806,5305616,5305254,5304996,5304835,5304614,5304082,5303850	Phosphoinositide binding protein; required for vesicle formation in autophagy; binds PtdIns(3,5)P2, PI3P and PI4P; WD-40 repeat containing protein and PROPPIN family member; relocalizes from the vacuole to cytoplasm upon DNA replication stress; mammalian homologs include: WIPI1, WIPI2, WIPI3 and WIPI4/WDR45; mutations in human WDR45 cause static encephalopathy of childhood with neurodegeneration in adulthood (SENDA)
chr10	5307778	5310538	5308606	5310313	-	Cre10.g457600.t1.1	Cre10.g457600.t1.1		5310216,5310074,5309733,5309085,5307778	5310538,5310135,5309874,5309470,5308828	
chr10	5310664	5313045	5310750	5311749	+	Cre10.g457650.t1.2	Cre10.g457650.t1.2		5310664,5311009,5311246,5311635	5310903,5311104,5311293,5313045	
chr10	5313053	5317193	5314326	5317054	-	Cre10.g457700.t1.2	Cre10.g457700.t1.2		5316999,5316868,5316729,5316595,5316401,5316055,5315261,5314719,5313053	5317193,5316924,5316787,5316663,5316501,5316143,5315521,5314922,5314544	
chr10	5317410	5324273	5318148	5324075	-	SULTR1	Cre10.g457750.t1.2		5323842,5323305,5323023,5322594,5322124,5321869,5321619,5321244,5320905,5320580,5320135,5319824,5319550,5319280,5318882,5318624,5317410	5324273,5323407,5323071,5322805,5322283,5321879,5321714,5321294,5320997,5320705,5320309,5319990,5319655,5319434,5318942,5318763,5318319	
chr10	5325567	5328016	5325664	5327519	+	Cre10.g457801.t1.1	Cre10.g457801.t1.1		5325567,5325757,5326939,5327192	5325670,5325834,5327046,5328016	
chr10	5328576	5330561	5328707	5330098	+	Cre10.g457850.t1.2	Cre10.g457850.t1.2		5328576,5329165,5329500,5329844	5328844,5329303,5329578,5330561	
chr10	5330571	5334876	5330689	5334628	-	Cre10.g457900.t1.2	Cre10.g457900.t1.2		5334450,5333776,5332729,5331478,5330571	5334876,5334302,5333638,5332583,5331316	
chr10	5334977	5339273	5335395	5338115	+	Cre10.g457950.t1.1	Cre10.g457950.t1.1		5334977,5335362,5337216,5337415,5337614,5337774	5335201,5337082,5337281,5337480,5337679,5339273	
chr10	5339387	5343738	5339561	5343321	+	Cre10.g458000.t1.2	Cre10.g458000.t1.2		5339387,5340223,5340475,5340979,5341318,5341666,5342081,5342543,5342910	5340017,5340319,5340619,5341158,5341444,5341818,5342266,5342677,5343738	
chr10	5343746	5349716	5344572	5349423	-	BCA3	Cre10.g458050.t1.2		5349321,5348905,5348546,5348034,5347722,5347289,5346853,5346605,5346257,5345858,5345615,5345274,5344957,5343746	5349716,5349051,5348626,5348071,5347903,5347416,5347086,5346692,5346421,5345964,5345746,5345365,5345077,5344749	putative branched-chain amino acid aminotransferase (BCAT1) (EC:2.6.1.42); class IV aminotransferase
chr10	5349829	5353276	5350354	5353190	-	YEE1	Cre10.g458100.t1.2		5353057,5352756,5352457,5352214,5351969,5351779,5351276,5350953,5349829	5353276,5352872,5352577,5352337,5352059,5351821,5351579,5351065,5350772	contains DUF395 domain, found in YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains several conserved glycines and an invariant cysteine that is probably an important functional residue
chr10	5353327	5357386	5354449	5357375	-	Cre10.g458150.t1.1	Cre10.g458150.t1.1		5357342,5356952,5356883,5356602,5356427,5353327	5357386,5357041,5356910,5356782,5356525,5356088	
chr10	5360467	5361998	5360572	5361839	+	Cre10.g458183.t1.1	Cre10.g458183.t1.1		5360467,5361330,5361812	5360853,5361408,5361998	
chr10	5362071	5366036	5362650	5365806	-	Cre10.g458216.t1.1	Cre10.g458216.t1.1		5365689,5365434,5362071	5366036,5365523,5365269	
chr10	5366491	5369326	5366862	5369256	-	Cre10.g458250.t1.1	Cre10.g458250.t1.1		5368910,5368507,5368199,5367918,5367526,5367211,5366491	5369326,5368625,5368258,5368059,5367611,5367321,5367015	
chr10	5369477	5373311	5369654	5372507	+	Cre10.g458300.t1.2	Cre10.g458300.t1.2		5369477,5369829,5370111,5370412,5371895	5369743,5369933,5370247,5371712,5373311	
chr10	5373737	5433028	5373874	5432711	+	SRR16	Cre10.g458350.t1.1		5373737,5374343,5374666,5374972,5375193,5375558,5375794,5376016,5376473,5376624,5376823,5377098,5377473,5378197,5378298,5378603,5378781,5378972,5379162,5379413,5379833,5380307,5380846,5381253,5381701,5381942,5382342,5382694,5383141,5383562,5383858,5384166,5384586,5384887,5385251,5385767,5386102,5387239,5388007,5388296,5388580,5389040,5389226,5389783,5389989,5390357,5390697,5390933,5391432,5391861,5392078,5392493,5392754,5393069,5393266,5393545,5393800,5394323,5394790,5395211,5395447,5395720,5395964,5396424,5397012,5397420,5397786,5398026,5398242,5398519,5398934,5399354,5399520,5400268,5400441,5400593,5400835,5401389,5401648,5401977,5402312,5402595,5402860,5403384,5403743,5403944,5404318,5404548,5404903,5405242,5405542,5405858,5406329,5406654,5406923,5407054,5407370,5407685,5408000,5408224,5408416,5408669,5408903,5409290,5409781,5410160,5410329,5410571,5410893,5411190,5411547,5411882,5412215,5412494,5412839,5413396,5413725,5414136,5414535,5414846,5415293,5415591,5415857,5416080,5416437,5416854,5417029,5417348,5417700,5417999,5418205,5418499,5418827,5419244,5419457,5419777,5419945,5420206,5420559,5421111,5421549,5421786,5422081,5422565,5422889,5423152,5423418,5423628,5423880,5424260,5424550,5424866,5425197,5425505,5425843,5426090,5426318,5426627,5426904,5427237,5427682,5427933,5428188,5428547,5428779,5429012,5429464,5429825,5430032,5430305,5430616,5431021,5431769	5373965,5374439,5374727,5375060,5375364,5375642,5375873,5376303,5376528,5376675,5376937,5377353,5377673,5378214,5378494,5378639,5378850,5379023,5379237,5379637,5380106,5380655,5381065,5381552,5381794,5382168,5382495,5382773,5383339,5383646,5383994,5384362,5384723,5385012,5385620,5385956,5387056,5387876,5388156,5388453,5388924,5389097,5389582,5389886,5390227,5390513,5390803,5391295,5391664,5391903,5392294,5392588,5392869,5393148,5393375,5393648,5394187,5394628,5395077,5395360,5395590,5395821,5396236,5396609,5397191,5397653,5397882,5398067,5398289,5398745,5399207,5399408,5399930,5400277,5400495,5400662,5401191,5401548,5401804,5402160,5402468,5402738,5403213,5403586,5403801,5404095,5404418,5404711,5405072,5405396,5405691,5406211,5406476,5406755,5406969,5407116,5407537,5407832,5408101,5408276,5408478,5408760,5408960,5409662,5409886,5410235,5410392,5410660,5410994,5411359,5411712,5412106,5412279,5412698,5413129,5413468,5413910,5414385,5414690,5415075,5415404,5415649,5415923,5416241,5416613,5416894,5417140,5417503,5417759,5418083,5418250,5418604,5418988,5419285,5419586,5419811,5420034,5420311,5420857,5421212,5421636,5421852,5422333,5422705,5422934,5423276,5423464,5423684,5423982,5424382,5424639,5424948,5425266,5425555,5425950,5426129,5426394,5426698,5427014,5427368,5427753,5427989,5428335,5428614,5428835,5429101,5429601,5429888,5430139,5430430,5430803,5431563,5433028	Scavenger receptor cysteine-rich protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins; null-allele mutant was isolated (PMID 29743196)
chr10	5373737	5433028	5373874	5432711	+	SRR16	Cre10.g458350.t2.1		5373737,5374343,5374666,5374972,5375193,5375558,5375794,5376016,5376473,5376624,5376823,5377098,5377473,5378197,5378298,5378603,5378781,5378972,5379162,5379413,5379833,5380307,5380846,5381253,5381701,5381942,5382342,5382694,5383141,5383562,5383858,5384166,5384586,5384887,5385251,5385767,5386102,5387239,5388007,5388296,5388580,5389040,5389226,5389783,5389989,5390357,5390697,5390933,5391432,5391861,5392078,5392493,5392754,5393069,5393266,5393551,5393800,5394323,5394790,5395211,5395447,5395720,5395964,5396424,5397012,5397420,5397786,5398026,5398242,5398519,5398934,5399354,5399520,5400268,5400441,5400593,5400835,5401389,5401648,5401977,5402312,5402595,5402860,5403384,5403743,5403944,5404318,5404548,5404903,5405242,5405542,5405858,5406329,5406654,5406923,5407054,5407370,5407685,5408000,5408224,5408416,5408669,5408903,5409290,5409781,5410160,5410329,5410571,5410893,5411190,5411547,5411882,5412215,5412494,5412839,5413396,5413725,5414136,5414535,5414846,5415293,5415591,5415857,5416080,5416437,5416854,5417029,5417348,5417700,5417999,5418205,5418499,5418827,5419244,5419457,5419777,5419945,5420206,5420559,5421111,5421549,5421786,5422081,5422565,5422889,5423152,5423418,5423628,5423880,5424260,5424550,5424866,5425197,5425505,5425843,5426090,5426318,5426627,5426904,5427237,5427682,5427933,5428188,5428547,5428779,5429012,5429464,5429825,5430032,5430305,5430616,5431021,5431769	5373965,5374439,5374727,5375060,5375364,5375642,5375873,5376303,5376528,5376675,5376937,5377353,5377673,5378214,5378494,5378639,5378850,5379023,5379237,5379637,5380106,5380655,5381065,5381552,5381794,5382168,5382495,5382773,5383339,5383646,5383994,5384362,5384723,5385012,5385620,5385956,5387056,5387876,5388156,5388453,5388924,5389097,5389582,5389886,5390227,5390513,5390803,5391295,5391664,5391903,5392294,5392588,5392869,5393148,5393375,5393648,5394187,5394628,5395077,5395360,5395590,5395821,5396236,5396609,5397191,5397653,5397882,5398067,5398289,5398745,5399207,5399408,5399930,5400277,5400495,5400662,5401191,5401548,5401804,5402160,5402468,5402738,5403213,5403586,5403801,5404095,5404418,5404711,5405072,5405396,5405691,5406211,5406476,5406755,5406969,5407116,5407537,5407832,5408101,5408276,5408478,5408760,5408960,5409662,5409886,5410235,5410392,5410660,5410994,5411359,5411712,5412106,5412279,5412698,5413129,5413468,5413910,5414385,5414690,5415075,5415404,5415649,5415923,5416241,5416613,5416894,5417140,5417503,5417759,5418083,5418250,5418604,5418988,5419285,5419586,5419811,5420034,5420311,5420857,5421212,5421636,5421852,5422333,5422705,5422934,5423276,5423464,5423684,5423982,5424382,5424639,5424948,5425266,5425555,5425950,5426129,5426394,5426698,5427014,5427368,5427753,5427989,5428335,5428614,5428835,5429101,5429601,5429888,5430139,5430430,5430803,5431563,5433028	Scavenger receptor cysteine-rich protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins; null-allele mutant was isolated (PMID 29743196)
chr10	5373737	5433028	5373874	5432711	+	SRR16	Cre10.g458350.t3.1		5373737,5374343,5374666,5374972,5375193,5375558,5375794,5376016,5376473,5376624,5376823,5377098,5377473,5378298,5378603,5378781,5378972,5379162,5379413,5379833,5380307,5380846,5381253,5381701,5381942,5382342,5382694,5383141,5383562,5383858,5384166,5384586,5384887,5385251,5385767,5386102,5387239,5388007,5388296,5388580,5389040,5389226,5389783,5389989,5390357,5390697,5390933,5391432,5391861,5392078,5392493,5392754,5393069,5393266,5393545,5393800,5394323,5394790,5395211,5395447,5395720,5395964,5396424,5397012,5397420,5397786,5398026,5398242,5398519,5398934,5399354,5399520,5400268,5400441,5400593,5400835,5401389,5401648,5401977,5402312,5402595,5402860,5403384,5403743,5403944,5404318,5404548,5404903,5405242,5405542,5405858,5406329,5406654,5406923,5407054,5407370,5407685,5408000,5408224,5408416,5408669,5408903,5409290,5409781,5410160,5410329,5410571,5410893,5411190,5411547,5411882,5412215,5412494,5412839,5413396,5413725,5414136,5414535,5414846,5415293,5415591,5415857,5416080,5416437,5416854,5417029,5417348,5417700,5417999,5418205,5418499,5418827,5419244,5419457,5419777,5419945,5420206,5420559,5421111,5421549,5421786,5422081,5422565,5422889,5423152,5423418,5423628,5423880,5424260,5424550,5424866,5425197,5425505,5425843,5426090,5426318,5426627,5426904,5427237,5427682,5427933,5428188,5428547,5428779,5429012,5429464,5429825,5430032,5430305,5430616,5431021,5431769	5373965,5374439,5374727,5375060,5375364,5375642,5375873,5376303,5376528,5376675,5376937,5377353,5377673,5378494,5378639,5378850,5379023,5379237,5379637,5380106,5380655,5381065,5381552,5381794,5382168,5382495,5382773,5383339,5383646,5383994,5384362,5384723,5385012,5385620,5385956,5387056,5387876,5388156,5388453,5388924,5389097,5389582,5389886,5390227,5390513,5390803,5391295,5391664,5391903,5392294,5392588,5392869,5393148,5393375,5393648,5394187,5394628,5395077,5395360,5395590,5395821,5396236,5396609,5397191,5397653,5397882,5398067,5398289,5398745,5399207,5399408,5399930,5400277,5400495,5400662,5401191,5401548,5401804,5402160,5402468,5402738,5403213,5403586,5403801,5404095,5404418,5404711,5405072,5405396,5405691,5406211,5406476,5406755,5406969,5407116,5407537,5407832,5408101,5408276,5408478,5408760,5408960,5409662,5409886,5410235,5410392,5410660,5410994,5411359,5411712,5412106,5412279,5412698,5413129,5413468,5413910,5414385,5414690,5415075,5415404,5415649,5415923,5416241,5416613,5416894,5417140,5417503,5417759,5418083,5418250,5418604,5418988,5419285,5419586,5419811,5420034,5420311,5420857,5421212,5421636,5421852,5422333,5422705,5422934,5423276,5423464,5423684,5423982,5424382,5424639,5424948,5425266,5425555,5425950,5426129,5426394,5426698,5427014,5427368,5427753,5427989,5428335,5428614,5428835,5429101,5429601,5429888,5430139,5430430,5430803,5431563,5433028	Scavenger receptor cysteine-rich protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins; null-allele mutant was isolated (PMID 29743196)
chr10	5433287	5434541	5433425	5433663	+	Cre10.g458400.t1.2	Cre10.g458400.t1.2		5433287	5434541	
chr10	5436288	5438246	5436878	5438145	-	GPX5	Cre10.g458450.t1.1		5438035,5437794,5437370,5437165,5436288	5438246,5437876,5437505,5437213,5436989	GPX5 is also named GPXH. GPXH gene expression is induced by singlet oxygen [PMID: 16160847; PMID: 15597886; PMID: 15517390; PMID: 11485197]. Homologous to glutathione peroxidase from other organisms. Probably cytosolic (no obvious N-terminal transit peptide).
chr10	5438301	5444563	5439158	5444476	-	ASK1	Cre10.g458500.t1.2		5444236,5443828,5443497,5443128,5442624,5442021,5441848,5441496,5440861,5440380,5440041,5439698,5439401,5438301	5444563,5443953,5443576,5443251,5442710,5442164,5441890,5441597,5440958,5440456,5440236,5439868,5439514,5439266	putative aspartate kinase, monofunctional (EC:2.7.2.4); possibly plastid targeted, based on Target-P prediction
chr10	5444687	5447129	5444724	5446601	+	Cre10.g458550.t1.2	Cre10.g458550.t1.2		5444687,5444901,5445108,5445478,5445789,5446231,5446529	5444795,5444955,5445214,5445517,5445860,5446287,5447129	
chr10	5447279	5450396	5447868	5450182	-	FAP245	Cre10.g458600.t1.1		5450289,5450065,5449888,5449651,5448911,5447279	5450396,5450187,5449977,5449718,5449514,5448366	Flagellar Associated Protein, found in the flagellar proteome
chr10	5450446	5451446	5450656	5451212	-	Cre10.g458626.t1.1	Cre10.g458626.t1.1		5450446	5451446	
chr10	5451637	5457906	5451897	5457674	-	Cre10.g458650.t1.1	Cre10.g458650.t1.1		5457602,5457398,5454594,5454141,5452477,5451637	5457906,5457520,5457259,5454216,5453913,5452251	
chr10	5458007	5460318	5458197	5459848	+	Cre10.g458700.t1.2	Cre10.g458700.t1.2		5458007,5458539,5458969,5459539	5458296,5458637,5459124,5460318	
chr10	5458007	5460438	5458197	5460387	+	Cre10.g458700.t2.1	Cre10.g458700.t2.1		5458007,5458539,5458969,5459539,5460387	5458296,5458637,5459124,5460324,5460438	
chr10	5460367	5461984	5460619	5461004	+	Cre10.g458750.t1.2	Cre10.g458750.t1.2		5460367,5460573,5460936	5460494,5460716,5461984	
chr10	5460487	5461984	5460619	5461004	+	Cre10.g458750.t2.1	Cre10.g458750.t2.1		5460487,5460573,5460936	5460494,5460716,5461984	
chr10	5462097	5467498	5462296	5466047	+	SRR31	Cre10.g458800.t1.2		5462097,5462693,5462901,5463352,5463829,5464078,5464544,5464758,5465064,5465379,5465659,5465984	5462354,5462750,5463025,5463506,5463923,5464364,5464600,5464891,5465156,5465460,5465768,5467498	part of a group of 5 closely-related SRR proteins
chr10	5467567	5472015	5467705	5471669	+	SRR32	Cre10.g458850.t1.2		5467567,5468008,5468448,5468950,5469333,5469759,5470018,5470453,5470779,5471108,5471388,5471606	5467763,5468202,5468608,5469041,5469565,5469815,5470208,5470527,5470857,5471165,5471451,5472015	part of a group of 5 closely-related SRR proteins
chr10	5472907	5478314	5473162	5477730	+	SRR33	Cre10.g458900.t1.1		5472907,5473605,5473925,5474564,5475095,5475329,5475739,5476065,5476544,5476800,5477125,5477371,5477667	5473232,5473781,5474079,5474655,5475154,5475495,5475795,5476225,5476618,5476872,5477179,5477434,5478314	part of a group of 5 closely-related SRR proteins
chr10	5478351	5486844	5479016	5486631	-	Cre10.g458950.t1.2	Cre10.g458950.t1.2		5485659,5485362,5484838,5484294,5483302,5482748,5482019,5481592,5481093,5480574,5480061,5479596,5479342,5478351	5486844,5485454,5484969,5484395,5483418,5482795,5482257,5481685,5481212,5480743,5480235,5479651,5479492,5479142	
chr10	5486891	5490536	5487090	5490140	-	Cre10.g459000.t1.1	Cre10.g459000.t1.1		5490297,5490103,5489771,5489435,5489054,5488797,5488519,5487970,5487715,5486891	5490536,5490142,5489854,5489504,5489232,5488892,5488596,5488087,5487761,5487515	
chr10	5490647	5496828	5490705	5495535	+	Cre10.g459050.t1.1	Cre10.g459050.t1.1		5490647,5493843,5494293,5495154	5493569,5493970,5494960,5496828	
chr10	5496913	5501286	5498075	5501134	-	Cre10.g459100.t1.1	Cre10.g459100.t1.1		5500938,5499685,5499111,5498687,5496913	5501286,5499720,5499406,5498833,5498543	
chr10	5502127	5504186	5502159	5503705	+	Cre10.g459151.t1.1	Cre10.g459151.t1.1		5502127,5502502,5503078,5503413	5502365,5502637,5503190,5504186	
chr10	5504975	5511406	5506073	5510976	-	PMA2	Cre10.g459200.t1.2		5511217,5510972,5510797,5510457,5510158,5509874,5509574,5509207,5508726,5508205,5507876,5504975	5511406,5511010,5510894,5510720,5510352,5510013,5509731,5509395,5509015,5508531,5507998,5507531	Putative plasma membrane-type proton ATPase GI:16751320; Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr10	5512770	5514666	5513627	5514461	-	Cre10.g459226.t1.1	Cre10.g459226.t1.1		5514026,5512770	5514666,5513861	
chr10	5514717	5515416	5514799	5515127	-	RPL35A	Cre10.g459250.t1.2		5514717	5515416	Cytosolic 60S large ribosomal subunit protein L35a
chr10	5516767	5520802	5518185	5520686	-	Cre10.g459300.t1.2	Cre10.g459300.t1.2		5520350,5519944,5519042,5516767	5520802,5520252,5519782,5518848	
chr10	5520849	5528522	5521400	5528440	-	OPR49	Cre10.g459350.t1.1		5527252,5526929,5525707,5525285,5524617,5523759,5523415,5523200,5522940,5522526,5522086,5520849	5528522,5527029,5526601,5525395,5525023,5524285,5523452,5523256,5522999,5522632,5522142,5521722	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr10	5528623	5530416	5528854	5529800	+	Cre10.g459400.t1.2	Cre10.g459400.t1.2		5528623,5529611	5528968,5530416	
chr10	5530427	5536792	5530494	5536444	-	SUB10	Cre10.g459450.t1.2		5536171,5535735,5535414,5534897,5534231,5533766,5533237,5532893,5532536,5532065,5531550,5531234,5530881,5530427	5536792,5535945,5535502,5535149,5534740,5534035,5533360,5533062,5532604,5532192,5531760,5531331,5530999,5530570	
chr10	5537000	5545331	5537214	5544650	+	NGB1	Cre10.g459500.t1.1		5537000,5538277,5538617,5538854,5539268,5539734,5540560,5540926,5541293,5541755,5542128,5542591,5543065,5543786,5544203,5544557	5537551,5538344,5538673,5539008,5539307,5539883,5540646,5540990,5541431,5541944,5542201,5542668,5543244,5544015,5544335,5545331	Involved in the biogenesis of the 60S ribosomal subunit (By similarity); Probably nuclear; nucleolar; Belongs to the GTP1/OBG family; NOG subfamily.
chr10	5545777	5552812	5546596	5552514	-	Cre10.g459550.t1.1	Cre10.g459550.t1.1		5552188,5551752,5551417,5551024,5550656,5550284,5549511,5548906,5548518,5548152,5547639,5547409,5547116,5545777	5552812,5551892,5551519,5551077,5550790,5550379,5549682,5549042,5548634,5548300,5547723,5547460,5547194,5546939	
chr10	5552923	5562154	5552987	5561630	+	Cre10.g459600.t1.1	Cre10.g459600.t1.1		5552923,5553669,5554847,5555205,5557025,5557363,5557899,5558262,5558727,5559356,5559729,5560128,5560722	5553477,5553958,5554951,5555600,5557096,5557494,5558078,5558570,5559211,5559548,5559931,5560489,5562154	
chr10	5562233	5566726	5562500	5565067	+	Cre10.g459650.t1.1	Cre10.g459650.t1.1		5562233,5562954,5563360,5564044	5562839,5563196,5563821,5566726	
chr10	5567019	5579132	5567133	5579019	-	Cre10.g459700.t1.1	Cre10.g459700.t1.1		5578846,5577862,5576475,5574882,5573816,5572873,5572111,5571249,5570786,5570261,5568690,5567019	5579132,5578618,5576962,5576176,5573872,5573597,5572668,5571648,5570962,5570428,5570065,5568258	
chr10	5579233	5580045	5579338	5579642	+	NUOA1	Cre10.g459750.t1.2		5579233,5579628	5579522,5580045	NADH:ubiquinone oxidoreductase (Complex I) subunit MWFE-like protein, mitochondrial; [= NDUFA1 subunit]; gb AAS48198  [PMID: 15450959; PMID: 15710684]
chr10	5580047	5584472	5580066	5584373	-	Cre10.g459800.t1.2	Cre10.g459800.t1.2		5584043,5583620,5583148,5582428,5582107,5581565,5581264,5581022,5580491,5580047	5584472,5583706,5583196,5582565,5582195,5581639,5581333,5581086,5580568,5580135	
chr10	5584577	5585202	5584641	5585013	-	Cre10.g459850.t1.2	Cre10.g459850.t1.2		5584926,5584577	5585202,5584806	
chr10	5585267	5591712	5585938	5591615	-	PFH4	Cre10.g459900.t1.1		5591560,5591356,5591263,5590848,5590391,5589059,5588746,5588136,5587610,5587230,5587102,5586766,5585267	5591712,5591474,5591291,5590944,5590473,5589146,5588786,5588218,5587671,5587325,5587122,5586816,5586241	contains C-terminal ShK domain, Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_843
chr10	5585267	5591712	5585938	5591615	-	PFH4	Cre10.g459900.t2.1		5591560,5591356,5591263,5590848,5590391,5589059,5588746,5588136,5587610,5587230,5586766,5585267	5591712,5591474,5591291,5590944,5590473,5589146,5588786,5588218,5587671,5587325,5586816,5586241	contains C-terminal ShK domain, Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_843
chr10	5592059	5597972	5592538	5597630	-	Cre10.g459950.t1.1	Cre10.g459950.t1.1		5597615,5597069,5596775,5595732,5595437,5594894,5594461,5593989,5593172,5592059	5597972,5597303,5596789,5596288,5595537,5594996,5594571,5594120,5593518,5592893	
chr10	5592059	5597972	5592538	5597630	-	Cre10.g459950.t2.1	Cre10.g459950.t2.1		5597615,5597069,5595732,5595437,5594894,5594461,5593989,5593172,5592059	5597972,5597303,5596288,5595537,5594996,5594571,5594120,5593518,5592893	
chr10	5598073	5602567	5598231	5602331	+	Cre10.g460000.t1.1	Cre10.g460000.t1.1		5598073,5598933,5599287,5599588,5600031,5600439,5600700,5601329	5598783,5599030,5599405,5599709,5600146,5600502,5600813,5602567	
chr10	5602643	5607668	5602867	5606956	+	FLU	Cre10.g460050.t1.1		5602643,5603282,5603949,5604420,5605034,5605570,5605895,5606400,5606837	5603076,5603402,5603984,5604615,5605297,5605658,5605960,5606457,5607668	Two alternative spliced variant l-FLP and s-FLP [PMID: 15630026]. Flu is a negative regulator of tetrapyrrole biosynthesis by interaction with the glutamyl-tRNA reductase through the tetratricopeptide repeat domain [PMID: 12459457, PMID: 11606728]; also known as tigrina D in barley [PMID: 14550558]
chr10	5602772	5607668	5602867	5606956	+	FLU	Cre10.g460050.t2.1		5602772,5603282,5604420,5605034,5605570,5605895,5606400,5606837	5603076,5603402,5604615,5605297,5605658,5605960,5606457,5607668	Two alternative spliced variant l-FLP and s-FLP [PMID: 15630026]. Flu is a negative regulator of tetrapyrrole biosynthesis by interaction with the glutamyl-tRNA reductase through the tetratricopeptide repeat domain [PMID: 12459457, PMID: 11606728]; also known as tigrina D in barley [PMID: 14550558]
chr10	5607777	5618602	5608266	5618332	-	Cre10.g460100.t1.2	Cre10.g460100.t1.2		5617847,5617501,5617147,5616768,5616458,5615674,5615188,5613760,5612379,5610984,5610717,5607777	5618602,5617589,5617253,5616817,5616602,5616007,5615410,5615056,5613200,5611944,5610757,5610333	null-allele mutant was isolated (PMID 29743196)
chr10	5618687	5631442	5620232	5630521	-	Cre10.g460150.t1.2	Cre10.g460150.t1.2		5631171,5630733,5630516,5630201,5629935,5629532,5628694,5628258,5627675,5625293,5624401,5623776,5623611,5623197,5622897,5622550,5622234,5621942,5621498,5620933,5620475,5618687	5631442,5630832,5630577,5630340,5629978,5629623,5629325,5628322,5628000,5627354,5624611,5624004,5623648,5623267,5622972,5622584,5622298,5622044,5621630,5621075,5620650,5620260	Transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration)
chr10	5631815	5634460	5632483	5634146	-	Cre10.g460201.t1.1	Cre10.g460201.t1.1		5633822,5633634,5633357,5633034,5631815	5634460,5633663,5633404,5633099,5632732	
chr10	5634507	5637642	5634746	5637411	-	Cre10.g460250.t1.2	Cre10.g460250.t1.2		5637132,5636674,5636430,5635340,5634507	5637642,5636795,5636478,5636162,5635000	
chr10	5637743	5639608	5637795	5639563	+	GPM2	Cre10.g460300.t1.2		5637743,5638013,5638429,5638837,5639336	5637861,5638165,5638545,5639041,5639608	phosphoglycerate/bisphosphoglycerate mutase family protein
chr10	5639617	5641242	5640925	5641172	-	Cre10.g460326.t1.1	Cre10.g460326.t1.1		5639617	5641242	
chr10	5641433	5647024	5641868	5646139	+	PGA4	Cre10.g460350.t1.1		5641433,5641785,5642335,5642993,5643354,5643750,5644694,5645164,5645713	5641574,5641934,5642472,5643115,5643464,5644438,5644832,5645217,5647024	Contains carbohydrate/purine kinase, PfkB, conserved site
chr10	5647027	5649962	5647580	5649733	-	Cre10.g460400.t1.1	Cre10.g460400.t1.1		5649687,5649373,5648095,5647027	5649962,5649437,5649227,5647773	
chr10	5647027	5649962	5647580	5649418	-	Cre10.g460400.t2.1	Cre10.g460400.t2.1		5649538,5649373,5648095,5647027	5649962,5649437,5649227,5647773	
chr10	5650103	5660272	5650550	5660128	-	Cre10.g460466.t1.1	Cre10.g460466.t1.1		5659912,5659288,5658596,5658371,5657948,5657623,5656201,5655687,5654814,5654283,5653805,5653521,5653153,5652759,5651919,5650969,5650103	5660272,5659491,5658721,5658426,5658121,5657683,5656688,5655965,5655006,5654329,5653999,5653605,5653221,5652839,5652083,5651633,5650550	null-allele mutant was isolated (PMID 29743196)
chr10	5660323	5673592	5660654	5673368	-	APC2b	Cre10.g460532.t1.1		5673330,5673181,5672865,5672518,5671882,5671435,5670589,5670162,5669425,5668839,5668198,5667581,5667118,5666752,5666212,5664950,5663974,5663312,5662552,5662074,5661794,5661069,5660323	5673592,5673250,5673047,5672634,5672052,5671642,5670942,5670460,5669916,5668965,5668289,5667686,5667325,5666824,5666280,5665810,5664018,5663420,5662652,5662317,5661901,5661175,5660753	Subunit 2 of Anaphase Promoting Complex. Cell cycle regulated E3 ubiquitin ligase.  Cullin-related protein; ts-lethal mutants arrest with 2C DNA content and fail to initiate cleavage plane and complete mitosis (PMID 29743196)
chr10	5683187	5693472	5684040	5693259	-	CYN53	Cre10.g460600.t1.1		5693129,5692602,5691636,5691215,5690798,5690511,5690089,5689781,5689489,5689154,5688678,5688325,5687921,5687344,5686657,5685917,5685535,5684971,5684447,5683187	5693472,5692909,5691743,5691271,5690887,5690561,5690197,5689824,5689513,5689251,5688721,5688406,5687992,5687441,5686732,5686072,5685657,5685089,5684525,5684157	Peptidyl-prolyl cis-trans isomerase (rotamase) with two cyclophilin domains in tandem; similar and linked to CYN52; contains N-terminal PAN domain of unknown function, shared with CYN51
chr10	5693581	5699644	5693755	5698965	+	CYN52	Cre10.g460650.t1.2		5693581,5693879,5694283,5694835,5695093,5695375,5695642,5696084,5696580,5696884,5697273,5697696,5698079,5698500,5698821	5693789,5694036,5694391,5694903,5695190,5695427,5695714,5696158,5696677,5696959,5697413,5697818,5698197,5698578,5699644	Peptidyl-prolyl cis-trans isomerase (rotamase) with two cyclophilin domains in tandem; similar to CYN53 and CYN51, linked to CYN53
chr10	5699693	5702874	5699883	5702132	+	Cre10.g460700.t1.1	Cre10.g460700.t1.1		5699693,5700153,5700582,5700933,5701520	5700003,5700392,5700794,5701259,5702874	
chr10	5706670	5710911	5707368	5710691	+	Cre10.g460750.t1.1	Cre10.g460750.t1.1		5706670,5707803,5708425,5708825,5709225,5709721,5710647	5707478,5708010,5708454,5708854,5709254,5709796,5710911	
chr10	5710960	5715244	5711937	5714264	+	Cre10.g460800.t1.2	Cre10.g460800.t1.2		5710960,5711415,5711775,5712388,5714264	5711221,5711636,5712105,5713668,5715244	
chr10	5716060	5719077	5716194	5718475	+	Cre10.g460850.t1.1	Cre10.g460850.t1.1		5716060,5716629,5717239,5717639,5718126,5718431	5716304,5716824,5717268,5717659,5718180,5719077	
chr10	5719262	5720279	5719500	5720250	-	Cre10.g460901.t1.1	Cre10.g460901.t1.1		5720239,5719974,5719262	5720279,5720045,5719648	
chr10	5721694	5722979	5722309	5722785	-	Cre10.g460950.t1.2	Cre10.g460950.t1.2		5722595,5721694	5722979,5722344	
chr10	5730830	5751133	5731319	5750687	+	Cre10.g461000.t1.2	Cre10.g461000.t1.2		5730830,5731786,5732162,5732749,5733268,5735927,5736417,5736847,5737154,5738092,5738773,5739695,5740307,5740852,5741908,5742399,5743064,5744062,5745890,5746793,5747509,5748065,5748792,5749280	5731415,5731905,5732401,5733007,5735722,5736050,5736716,5736941,5737841,5738560,5739448,5740033,5740490,5740984,5742055,5742599,5743525,5745379,5746138,5747269,5747721,5748271,5749103,5751133	
chr10	5751540	5756072	5751688	5755368	+	ATPVA1	Cre10.g461050.t1.2		5751540,5751798,5752023,5752144,5752377,5752807,5753612,5753980,5754366,5754855,5755276	5751726,5751936,5752079,5752314,5752553,5753139,5753795,5754152,5754613,5755093,5756072	Vacuolar ATP synthase subunit A, V-ATPase A, vacuolar proton pump alpha subunit
chr10	5756240	5758500	5756470	5757791	+	Cre10.g461100.t1.1	Cre10.g461100.t1.1		5756240,5756857,5757187,5757640	5756666,5756887,5757258,5758500	
chr10	5760250	5765301	5760293	5763763	+	Cre10.g461150.t1.2	Cre10.g461150.t1.2		5760250,5762266,5762590,5763148,5763269,5763489	5760522,5762471,5762976,5763179,5763388,5765301	The 3' UTR of this gene is highly similar to that of the nearby ATPvA1 and other genes, even though the genes share no similarity in their coding region, possibly an overlooke transposon
chr10	5765306	5768549	5765711	5767778	-	Cre10.g461200.t1.1	Cre10.g461200.t1.1		5767316,5766966,5765306	5768549,5767118,5766755	
chr10	5769039	5775067	5769178	5774723	+	Cre10.g461250.t1.1	Cre10.g461250.t1.1		5769039,5769282,5769535,5769797,5770339,5770698,5771006,5771363,5771763,5772084,5772358,5772659,5773041,5773591,5774069,5774609	5769214,5769361,5769604,5769970,5770516,5770883,5771169,5771491,5771930,5772171,5772446,5772814,5773196,5773783,5774247,5775067	ts-lethal mutant block at S/M (PMID 29743196)
chr10	5775210	5779751	5775373	5779704	+	Cre10.g461300.t1.1	Cre10.g461300.t1.1		5775210,5775559,5775641,5775941,5776215,5776868,5777204,5777794,5778095,5778539,5778860,5779504,5779704	5775481,5775582,5775783,5776040,5776364,5776947,5777534,5777970,5778324,5778778,5779260,5779590,5779751	
chr10	5775210	5779751	5775655	5779704	+	Cre10.g461300.t2.1	Cre10.g461300.t2.1		5775210,5775941,5776215,5776868,5777204,5777794,5778095,5778539,5778860,5779504,5779704	5775783,5776040,5776364,5776947,5777534,5777970,5778324,5778778,5779260,5779590,5779751	
chr10	5775340	5779751	5775655	5779704	+	Cre10.g461300.t3.1	Cre10.g461300.t3.1		5775340,5775559,5775641,5775941,5776215,5776868,5777204,5777794,5778095,5778539,5778860,5779504,5779704	5775481,5775582,5775783,5776040,5776364,5776947,5777534,5777970,5778324,5778778,5779260,5779590,5779751	
chr10	5779800	5785196	5779935	5783453	+	Cre10.g461319.t1.2	Cre10.g461319.t1.2		5779800,5779927,5780142,5780402,5780630,5780988,5781374,5781753,5781994,5782404,5782844	5779808,5780006,5780259,5780494,5780814,5781159,5781574,5781848,5782170,5782574,5785196	
chr10	5786260	5789509	5786391	5789246	+	BUG23	Cre10.g461350.t1.1		5786260,5786588,5787165,5787477,5787940,5788331,5788883	5786508,5786839,5787263,5787581,5788035,5788534,5789509	Basal body protein of unknown function; found in basal body proteome [PMID: 15964273]. Transcript upregulated during flagellar regeneration.
chr10	5791636	5802099	5793454	5801780	-	Cre10.g461400.t1.1	Cre10.g461400.t1.1		5801584,5801342,5800912,5800601,5800332,5800044,5799459,5797442,5796996,5791636	5802099,5801409,5801196,5800743,5800474,5800204,5799889,5799317,5797270,5796860	
chr10	5802200	5806797	5802672	5804466	+	Cre10.g461450.t1.2	Cre10.g461450.t1.2		5802200,5802665,5804043	5802537,5803836,5806797	
chr10	5802200	5806797	5802672	5804466	+	Cre10.g461450.t2.1	Cre10.g461450.t2.1		5802200,5802665,5804043	5802525,5803836,5806797	
chr10	5807620	5819911	5807848	5818853	+	Cre10.g461500.t1.2	Cre10.g461500.t1.2		5807620,5808781,5809279,5809498,5810018,5810594,5810981,5812185,5812481,5813397,5813798,5814251,5815255,5815734,5817309,5817959,5818649	5808646,5809150,5809326,5809640,5810196,5810686,5811778,5812278,5813029,5813620,5813954,5814922,5815533,5817124,5817703,5818413,5819911	
chr10	5820304	5827039	5821183	5826807	-	Cre10.g461550.t1.2	Cre10.g461550.t1.2		5826919,5826687,5823572,5820304	5827039,5826828,5826455,5823420	
chr10	5827134	5829759	5827695	5829729	-	Cre10.g461575.t1.1	Cre10.g461575.t1.1		5829526,5829388,5829162,5828752,5828584,5828333,5827134	5829759,5829457,5829189,5828807,5828615,5828366,5828055	
chr10	5827134	5829759	5828105	5829729	-	Cre10.g461575.t2.1	Cre10.g461575.t2.1		5829526,5829388,5829162,5828752,5828584,5827134	5829759,5829457,5829189,5828807,5828610,5828366	
chr10	5827134	5829759	5828042	5829729	-	Cre10.g461575.t3.1	Cre10.g461575.t3.1		5829526,5829388,5829162,5828752,5828584,5827134	5829759,5829457,5829189,5828807,5828615,5828055	
chr10	5829810	5831398	5830187	5831146	-	Cre10.g461650.t1.2	Cre10.g461650.t1.2		5830466,5829810	5831398,5830257	
chr10	5831570	5847977	5831711	5847471	+	Cre10.g461700.t1.1	Cre10.g461700.t1.1		5831570,5832162,5832927,5833281,5833735,5833952,5834924,5835306,5836128,5836695,5837000,5838011,5839113,5839561,5840179,5840411,5841079,5841478,5842240,5842556,5843383,5843831,5844129,5844574,5845025,5845940,5846328	5831967,5832697,5832971,5833580,5833779,5834746,5835121,5835728,5836522,5836767,5837794,5838894,5839164,5839995,5840241,5840807,5841188,5842080,5842334,5843174,5843472,5843929,5844284,5844783,5845663,5846143,5847977	
chr10	5848201	5866629	5848980	5866478	-	DMC5	Cre10.g461750.t1.1		5866456,5866164,5865466,5865163,5864715,5864361,5863876,5863541,5862951,5862579,5862251,5862058,5861639,5860984,5860661,5860082,5859556,5859341,5858808,5857956,5857491,5857124,5856657,5856079,5855729,5855374,5855140,5854658,5854242,5853783,5853207,5852883,5852609,5852099,5851731,5851013,5850671,5850325,5849964,5849703,5849346,5848201	5866629,5866256,5866043,5865278,5864803,5864551,5863991,5863622,5863022,5862719,5862454,5862104,5861861,5861327,5860724,5860213,5859786,5859400,5859068,5858564,5857754,5857270,5856734,5856513,5855872,5855472,5855206,5854977,5854358,5853929,5853266,5852937,5852691,5852267,5851839,5851159,5850755,5850398,5850087,5849756,5849411,5849073	Putative DNMT1-type cytosine-C5 specific DNA methylase; protein contains both a methylase domain and a bromo adjacent homology (BAH) domain.  ChromoDB DMT341
chr10	5866800	5879491	5867434	5879475	+	Cre10.g461850.t1.1	Cre10.g461850.t1.1		5866800,5867395,5873769,5874181,5875322,5876189,5876550,5877805,5878279,5878935	5867240,5868921,5873892,5874783,5875928,5876280,5877590,5878034,5878753,5879491	
chr10	5879540	5883851	5879612	5882724	+	Cre10.g461851.t1.1	Cre10.g461851.t1.1		5879540,5880051,5880540,5880970,5881460,5881685,5882121,5882629	5879850,5880322,5880807,5881362,5881497,5881955,5882309,5883851	
chr10	5879540	5883851	5879612	5882724	+	Cre10.g461851.t2.1	Cre10.g461851.t2.1		5879540,5880051,5880540,5880970,5881460,5881685,5882121,5882629	5879850,5880322,5880807,5881350,5881497,5881955,5882309,5883851	
chr10	5879730	5883851	5879756	5882724	+	Cre10.g461851.t3.1	Cre10.g461851.t3.1		5879730,5880054,5880540,5880970,5881460,5881685,5882121,5882629	5879850,5880322,5880807,5881362,5881497,5881955,5882309,5883851	
chr10	5885997	5887362	5887006	5887208	-	Cre10.g461874.t1.1	Cre10.g461874.t1.1		5885997	5887362	
chr10	5887463	5888854	5887587	5888535	+	Cre10.g461895.t1.2	Cre10.g461895.t1.2		5887463,5887942,5888282	5887601,5888037,5888854	
chr10	5888933	5895520	5889061	5894927	+	Cre10.g461900.t1.2	Cre10.g461900.t1.2		5888933,5889605,5890155,5890647,5891062,5891621,5892050,5892745,5893209,5893578,5894127,5894619,5894882	5889227,5889687,5890183,5890755,5891172,5891652,5892170,5892861,5893279,5893692,5894267,5894675,5895520	
chr10	5895675	5897800	5896506	5897662	-	PBE1	Cre10.g461950.t1.2		5896927,5895675	5897800,5896593	20S proteasome beta subunit E, type beta 5; (PRE2), (PSB5), chymotrypsin-like activity
chr10	5897903	5902624	5898040	5900566	+	Cre10.g462000.t1.1	Cre10.g462000.t1.1		5897903,5898238,5898688,5899180,5899643,5900131,5900538	5898086,5898399,5898892,5899360,5899724,5900305,5902624	
chr10	5897903	5902624	5898040	5900566	+	Cre10.g462000.t2.1	Cre10.g462000.t2.1		5897903,5898241,5898688,5899180,5899643,5900131,5900538	5898086,5898399,5898892,5899360,5899724,5900305,5902624	
chr10	5902630	5910312	5903451	5910060	-	PTK20	Cre10.g462050.t1.1		5909937,5909684,5909427,5908860,5908337,5907773,5907224,5906279,5905930,5905708,5905401,5905118,5904781,5904598,5904385,5904124,5903811,5902630	5910312,5909737,5909543,5909029,5908410,5907933,5907541,5907041,5906020,5905738,5905547,5905219,5904941,5904682,5904409,5904191,5903861,5903646	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr10	5911343	5924364	5911538	5923931	+	Cre10.g462100.t1.1	Cre10.g462100.t1.1		5911343,5912156,5912736,5913558,5914028,5914679,5915249,5915813,5916124,5916525,5917945,5918634,5918844,5919492,5920015,5921285	5911816,5912261,5913216,5913754,5914395,5914764,5915500,5915900,5916199,5917646,5918460,5918681,5919245,5919647,5921073,5924364	
chr10	5924387	5935412	5925779	5935135	-	Cre10.g462150.t1.1	Cre10.g462150.t1.1		5928754,5928190,5927489,5927066,5926491,5924387	5935412,5928594,5927965,5927257,5926721,5926235	
chr10	5935593	5941064	5936193	5940627	+	HDA17	Cre10.g462200.t1.2		5935593,5936585,5937220,5937678,5938142,5938607,5938866,5939260,5939547	5936316,5936658,5937316,5937857,5938237,5938645,5938941,5939378,5941064	Belongs to SIR2 family; ChromDB SRT3402
chr10	5941102	5945162	5941529	5945044	-	REF1	Cre10.g462250.t1.2		5944648,5944425,5943788,5943464,5943133,5942825,5942433,5942130,5941102	5945162,5944552,5943833,5943519,5943229,5942901,5942546,5942223,5941535	Nuclear protein that binds to RNA and to Mex67p, required for export of poly(A)+ mRNA from the nucleus; member of the REF (RNA and export factor binding proteins) family; homologue of YRA1 and YRA2 yeast proteins. Contains one RNA recognition motif (RRM); null-allele mutant was isolated (PMID 29743196)
chr10	5945263	5957649	5945405	5957052	+	Cre10.g462300.t1.1	Cre10.g462300.t1.1		5945263,5945754,5946521,5947600,5947991,5948546,5949026,5949446,5950308,5950585,5951444,5952078,5952519,5952974,5954907,5955530,5955965,5956566	5945438,5945846,5947120,5947741,5948151,5948637,5949086,5949604,5950376,5950731,5951569,5952158,5952578,5953033,5954996,5955622,5956075,5957649	
chr10	5960733	5971328	5961474	5969869	+	Cre10.g462350.t1.1	Cre10.g462350.t1.1		5960733,5961799,5962225,5962599,5962917,5963370,5963672,5964133,5964374,5964737,5966109,5966547,5966874,5967222,5967547,5967908,5968104,5968314,5968787,5969746	5961636,5961945,5962312,5962673,5963081,5963422,5963767,5964164,5964522,5965979,5966274,5966743,5966913,5967278,5967628,5967948,5968163,5968466,5968828,5971328	
chr10	5971883	5976144	5972091	5974931	+	Cre10.g462400.t1.1	Cre10.g462400.t1.1		5971883,5972931	5972800,5976144	
chr10	5976167	5978462	5976368	5978111	-	Cre10.g462450.t1.2	Cre10.g462450.t1.2		5977748,5976167	5978462,5977544	
chr10	5977078	5978462	5977140	5978111	-	Cre10.g462450.t2.1	Cre10.g462450.t2.1		5977748,5977253,5977078	5978462,5977544,5977157	
chr10	5978544	5980922	5979150	5980873	-	PUS16	Cre10.g462500.t1.1		5980861,5980586,5980296,5979772,5978544	5980922,5980665,5980428,5980065,5979426	linked to PUS15
chr10	5980997	5982892	5981897	5982807	-	Cre10.g462550.t1.2	Cre10.g462550.t1.2		5980997	5982892	
chr10	5982950	5984892	5983087	5984737	-	PUS15	Cre10.g462600.t1.1		5984710,5984553,5984310,5984067,5983646,5983219,5982950	5984892,5984643,5984406,5984180,5983787,5983308,5983099	linked to PUS16
chr10	5984943	5987242	5985656	5987032	-	Cre10.g462650.t1.2	Cre10.g462650.t1.2		5986739,5986226,5985880,5984943	5987242,5986662,5986050,5985656	
chr10	5988813	5991474	5988929	5990796	+	Cre10.g462700.t1.1	Cre10.g462700.t1.1		5988813,5989177,5989651,5990019,5990577	5989054,5989316,5989733,5990147,5991474	
chr10	5991523	5999424	5991626	5998956	+	Cre10.g462750.t1.1	Cre10.g462750.t1.1		5991523,5991833,5992140,5993165,5993764,5994551,5995032,5995497,5996133,5996701,5997272,5997718,5998107	5991749,5991905,5992764,5993488,5993916,5994764,5995203,5995915,5996270,5996935,5997333,5997864,5999424	
chr10	5999473	6000654	5999551	6000566	+	Cre10.g462783.t1.1	Cre10.g462783.t1.1		5999473	6000654	
chr10	6000713	6004994	6000799	6004531	+	Cre10.g462816.t1.1	Cre10.g462816.t1.1		6000713,6001702,6002136,6002629,6003046,6003442,6004284	6001216,6001842,6002261,6002758,6003276,6004018,6004994	
chr10	6005002	6013665	6005492	6013410	-	Cre10.g462850.t1.1	Cre10.g462850.t1.1		6013151,6012458,6011886,6010976,6010363,6006749,6006480,6005002	6013665,6012823,6012118,6011218,6010431,6009880,6006566,6006059	
chr10	6014106	6017697	6014321	6017144	+	Cre10.g462901.t1.1	Cre10.g462901.t1.1		6014106,6015587	6015407,6017697	
chr10	6018004	6019585	6018797	6019520	-	PRPL33	Cre10.g462950.t1.2		6019301,6018004	6019585,6018884	imported to chloroplast; Chloroplast large ribosomal subunit protein L33
chr10	6019726	6036137	6020024	6035274	+	Cre10.g463026.t1.1	Cre10.g463026.t1.1		6019726,6020379,6021394,6022098,6022431,6023036,6023630,6024932,6027478,6027870,6028516,6028827,6029347,6030216,6030787,6031599,6032307,6032584,6033138,6033537,6033966,6034381,6034686	6020105,6020621,6021533,6022175,6022536,6023245,6024460,6026214,6027600,6027936,6028599,6028979,6029847,6030467,6030843,6031934,6032406,6032774,6033369,6033719,6034072,6034446,6036137	
chr10	6036436	6038837	6037002	6038731	+	Cre10.g463100.t1.2	Cre10.g463100.t1.2		6036436,6037546	6037374,6038837	
chr10	6038850	6043575	6039556	6042832	-	Cre10.g463150.t1.1	Cre10.g463150.t1.1		6042664,6042422,6041670,6041349,6040853,6040259,6038850	6043575,6042460,6042030,6041431,6040919,6040505,6039737	
chr10	6043676	6048927	6043811	6047901	+	Cre10.g463200.t1.2	Cre10.g463200.t1.2		6043676,6044174,6044746,6045412,6045825,6046085,6046445,6047820	6043882,6044247,6045028,6045514,6045887,6046196,6047475,6048927	
chr10	6048940	6055115	6049701	6054773	-	Cre10.g463250.t1.1	Cre10.g463250.t1.1		6054549,6054132,6052535,6051796,6051307,6050785,6050135,6048940	6055115,6054269,6053742,6052178,6051527,6050895,6050495,6049803	null-allele mutant was isolated (PMID 29743196)
chr10	6055216	6068137	6055315	6067292	+	Cre10.g463300.t1.2	Cre10.g463300.t1.2		6055216,6055833,6056446,6056795,6057121,6057668,6058176,6058629,6059198,6059695,6060094,6060584,6061021,6061658,6062251,6062645,6063358,6063774,6064170,6064535,6065086,6065604,6066205,6066567,6067076	6055531,6055947,6056546,6056857,6057210,6057799,6058252,6058830,6059242,6059796,6060198,6060649,6061136,6061819,6062308,6062761,6063507,6063868,6064287,6064632,6065351,6065758,6066260,6066684,6068137	
chr10	6068144	6071251	6068389	6071024	-	HRP3	Cre10.g463350.t1.2		6070954,6070554,6070045,6069679,6069400,6069139,6068144	6071251,6070657,6070259,6069802,6069462,6069237,6068911	cell wall protein; contains (hydroxy)proline-rich (HR) domain with (SP)n repeats
chr10	6071396	6072627	6071804	6072460	+	Cre10.g463355.t1.2	Cre10.g463355.t1.2		6071396,6072305	6071973,6072627	
chr10	6072767	6077625	6073267	6076831	-	Cre10.g463370.t1.2	Cre10.g463370.t1.2		6076755,6076647,6076426,6075693,6075200,6074790,6074303,6073939,6072767	6077625,6076668,6076514,6075775,6075414,6074910,6074368,6074037,6073639	
chr10	6077675	6081025	6078694	6080612	-	Cre10.g463400.t1.1	Cre10.g463400.t1.1		6080557,6080175,6079469,6077675	6081025,6080308,6079690,6079066	
chr10	6081156	6084297	6081397	6083329	+	Cre10.g463450.t1.1	Cre10.g463450.t1.1		6081156,6081715,6082090,6082597,6083141	6081466,6081749,6082342,6082990,6084297	
chr10	6084346	6091917	6084587	6089138	+	Cre10.g463500.t1.1	Cre10.g463500.t1.1		6084346,6085095,6085944,6087431,6087592,6087824,6088027,6088503,6088991	6084727,6085711,6087198,6087467,6087647,6087920,6088332,6088805,6091917	
chr10	6093116	6099757	6094180	6097817	+	Cre10.g463550.t1.1	Cre10.g463550.t1.1		6093116,6093975,6095868,6096101,6096409,6096627,6097104,6097751	6093857,6095697,6095904,6096156,6096505,6096932,6097499,6099757	
chr10	6100046	6112271	6100284	6110205	+	TGL17	Cre10.g463600.t1.2		6100046,6100693,6101109,6101538,6103225,6103644,6104018,6104297,6104576,6105025,6105411	6100346,6100845,6101322,6102960,6103338,6103797,6104096,6104363,6104820,6105195,6112271	
chr10	6112282	6114425	6113415	6114102	-	Cre10.g463650.t1.2	Cre10.g463650.t1.2		6114347,6114067,6113817,6112282	6114425,6114201,6113889,6113472	
chr10	6114480	6118125	6115203	6117647	-	Cre10.g463700.t1.1	Cre10.g463700.t1.1		6117392,6117122,6116494,6114480	6118125,6117304,6116779,6116150	
chr10	6118289	6129555	6118929	6129350	-	CYG27	Cre10.g463750.t1.1		6129259,6128778,6128315,6128044,6127612,6126620,6125455,6125183,6124873,6124618,6121070,6120697,6120225,6119956,6118289	6129555,6128904,6128414,6128125,6127712,6127378,6126405,6125269,6124968,6124685,6124399,6120770,6120383,6120062,6119631	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr10	6130645	6132925	6130998	6132779	-	Cre10.g463800.t1.2	Cre10.g463800.t1.2		6132659,6132296,6131993,6131509,6131159,6130645	6132925,6132409,6132157,6131690,6131249,6131034	
chr10	6130751	6132925	6130998	6132779	-	Cre10.g463800.t2.1	Cre10.g463800.t2.1		6132659,6132296,6131993,6131509,6131159,6130751	6132925,6132409,6132157,6131690,6131249,6131034	
chr10	6133086	6138035	6133890	6137913	-	Cre10.g463850.t1.2	Cre10.g463850.t1.2		6137722,6137581,6137419,6137172,6136992,6136442,6136194,6135524,6134650,6134347,6134143,6133086	6138035,6137647,6137505,6137287,6137037,6136866,6136300,6135995,6135386,6134492,6134217,6133977	
chr10	6138206	6150987	6138311	6149784	+	Cre10.g463900.t1.1	Cre10.g463900.t1.1		6138206,6138844,6139158,6139621,6140679,6145524,6145765,6145982,6146353,6146918,6147231,6147815,6148054,6148478,6148973,6149451	6138463,6138916,6139242,6140474,6140778,6145621,6145813,6146100,6146472,6146958,6147585,6147877,6148198,6148758,6149158,6150987	
chr10	6144856	6150987	6145016	6149784	+	Cre10.g463900.t3.1	Cre10.g463900.t3.1		6144856,6145524,6145765,6145982,6146353,6146918,6147231,6147815,6148054,6148478,6148973,6149451	6145041,6145621,6145813,6146100,6146472,6146958,6147585,6147877,6148198,6148758,6149158,6150987	
chr10	6138206	6142737	6138311	6140960	+	Cre10.g463900.t2.1	Cre10.g463900.t2.1		6138206,6138844,6139158,6139621,6140679,6140952	6138463,6138916,6139242,6140474,6140778,6142737	
chr10	6151013	6156815	6152034	6156735	-	Cre10.g463934.t1.1	Cre10.g463934.t1.1		6156554,6155634,6154160,6152609,6151013	6156815,6155912,6155433,6152765,6152084	
chr10	6151013	6156815	6153831	6156735	-	Cre10.g463934.t2.1	Cre10.g463934.t2.1		6156554,6155634,6154160,6151013	6156815,6155912,6155433,6153855	
chr10	6157056	6160197	6157163	6159954	+	Cre10.g463968.t1.1	Cre10.g463968.t1.1		6157056,6157490,6159022,6159738	6157346,6157538,6159224,6160197	
chr10	6160210	6164065	6160980	6164040	-	Cre10.g464037.t1.2	Cre10.g464037.t1.2		6163473,6163108,6162764,6160210	6164065,6163212,6162818,6162476	
chr10	6164114	6170265	6165245	6170082	-	Cre10.g464050.t1.1	Cre10.g464050.t1.1		6169951,6169577,6168965,6168432,6167911,6167624,6167008,6166486,6166112,6165675,6164114	6170265,6169718,6169052,6168514,6167994,6167674,6167163,6166592,6166199,6165800,6165287	
chr10	6170561	6175145	6170871	6174476	+	Cre10.g464100.t1.2	Cre10.g464100.t1.2		6170561,6171816,6171990,6172369,6173592,6174024,6174317	6171603,6171837,6172202,6173414,6173933,6174173,6175145	
chr10	6175431	6181292	6175566	6181182	+	Cre10.g464133.t1.1	Cre10.g464133.t1.1		6175431,6176350,6176624,6176821,6178064,6180064,6180547	6176142,6176457,6176678,6177477,6178123,6180123,6181292	
chr10	6179181	6181292	6179359	6181182	+	Cre10.g464133.t2.1	Cre10.g464133.t2.1		6179181,6180064,6180547	6179477,6180123,6181292	
chr10	6181295	6189780	6182155	6189016	-	Cre10.g464200.t1.1	Cre10.g464200.t1.1		6187841,6187279,6186664,6185406,6184276,6183601,6183115,6182706,6181295	6189780,6187534,6187002,6186531,6185204,6184070,6183445,6182870,6182440	
chr10	6189835	6192500	6189903	6192394	-	Cre10.g464250.t1.2	Cre10.g464250.t1.2		6192252,6192012,6191683,6191335,6190989,6190576,6190238,6189835	6192500,6192075,6191788,6191416,6191107,6190665,6190288,6189948	null-allele mutant was isolated (PMID 29743196)
chr10	6192621	6198492	6192754	6197919	+	Cre10.g464264.t1.2	Cre10.g464264.t1.2		6192621,6193248,6193677,6194569,6195307,6196761,6197655	6192903,6193375,6194033,6194741,6195421,6197365,6198492	
chr10	6198671	6202562	6199076	6202072	+	Cre10.g464300.t1.1	Cre10.g464300.t1.1		6198671,6199035,6199612,6200244,6201698,6202072	6198921,6199292,6199677,6201371,6201896,6202562	
chr10	6202611	6204852	6202671	6204309	+	Cre10.g464325.t1.1	Cre10.g464325.t1.1		6202611,6203016,6203245,6204075	6202764,6203105,6203823,6204852	
chr10	6205943	6210320	6206333	6210110	-	Cre10.g464350.t1.2	Cre10.g464350.t1.2		6210030,6209894,6209705,6208937,6208183,6207761,6207002,6206535,6205943	6210320,6209955,6209736,6209463,6208621,6207923,6207148,6206768,6206368	
chr10	6205943	6210320	6206333	6210110	-	Cre10.g464350.t2.1	Cre10.g464350.t2.1		6210030,6209894,6209705,6208937,6208183,6207761,6207002,6206535,6205943	6210320,6209955,6209736,6209460,6208621,6207923,6207148,6206768,6206368	
chr10	6210375	6213750	6210712	6213717	-	SSA20	Cre10.g464400.t1.1		6213142,6212649,6212385,6212106,6211734,6211412,6210894,6210375	6213750,6212752,6212508,6212186,6211942,6211519,6211198,6210736	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr10	6213799	6220740	6214319	6220658	-	Cre10.g464450.t1.1	Cre10.g464450.t1.1		6220248,6219780,6219309,6218806,6218338,6217353,6216562,6216208,6215903,6214825,6213799	6220740,6219945,6219468,6218909,6218412,6218087,6217122,6216309,6215943,6215296,6214592	
chr10	6220841	6224199	6221043	6222753	+	PDO1	Cre10.g464500.t1.2		6220841,6221365,6221546,6221718,6222106,6222497	6221162,6221451,6221583,6221928,6222261,6224199	
chr10	6224521	6231686	6224934	6230734	+	LAT1	Cre10.g464550.t1.2		6224521,6225230,6225518,6228120,6228681,6229137,6229427,6229805	6225042,6225379,6227968,6228476,6228881,6229227,6229570,6231686	null mutants sentitive to the actin-depolymerizing drug Latrunculin B; 1-nt deletion mutant in potential N-terminal extension (annotated in v5.5 as 5'-UTR) also LatB-sensitive
chr10	6232112	6235270	6232837	6235133	-	CAM14	Cre10.g464600.t1.1		6235133,6234823,6234504,6233885,6233275,6232112	6235270,6234994,6234604,6233952,6233443,6232939	Calmodulin-like protein and early zygote expressed protein [PMID: 1848763]
chr10	6235381	6238071	6235520	6237532	+	CGL36	Cre10.g464650.t1.2		6235381,6236117,6236397,6236806,6237102,6237472	6235868,6236200,6236474,6236893,6237199,6238071	
chr10	6238075	6239930	6238313	6239547	-	Cre10.g464700.t1.2	Cre10.g464700.t1.2		6238075	6239930	
chr10	6240085	6242785	6240265	6242368	-	Cre10.g464750.t1.2	Cre10.g464750.t1.2		6242522,6242347,6242124,6241401,6240867,6240085	6242785,6242385,6242206,6241752,6241007,6240484	Related to GCN5
chr10	6243075	6244040	6243107	6243359	-	Cre10.g464776.t1.1	Cre10.g464776.t1.1		6243203,6243075	6244040,6243143	
chr10	6243691	6255722	6244066	6253872	+	Cre10.g464800.t1.2	Cre10.g464800.t1.2		6243691,6244257,6244499,6244790,6244932,6245115,6245445,6245618,6245935,6247132,6247519,6248037,6248382,6248715,6249018,6249221,6249520,6250916,6251168,6252769,6253267,6253590	6244125,6244349,6244625,6244878,6244977,6245156,6245508,6245747,6246917,6247300,6247831,6248277,6248582,6248758,6249049,6249338,6250722,6251051,6252624,6253014,6253422,6255722	null-allele mutant was isolated (PMID 29743196)
chr10	6255778	6259485	6255892	6258870	+	MSRA5	Cre10.g464850.t1.2		6255778,6256295,6256653,6256981,6257212,6257565,6257733,6258246,6258756	6256003,6256470,6256746,6257000,6257264,6257613,6257793,6258350,6259485	catalyzes the thioredoxin-dependent reduction of L-methionine (S)-S-oxide in oxidized proteins
chr10	6259755	6266470	6261033	6266348	-	Cre10.g464900.t1.1	Cre10.g464900.t1.1		6266149,6265724,6265377,6264811,6264435,6263742,6263396,6262911,6262519,6262202,6261844,6261452,6259755	6266470,6265903,6265455,6265141,6264624,6264100,6263594,6263120,6262617,6262281,6261973,6261629,6261190	
chr10	6266621	6281183	6267895	6280670	+	Cre10.g464950.t1.1	Cre10.g464950.t1.1		6266621,6267770,6268655,6269215,6270429,6270934,6271280,6271739,6272202,6272528,6272926,6274164,6274619,6275043,6275572,6276386,6276853,6278080,6278452,6279320,6279629,6280262	6266825,6268222,6268907,6269930,6270506,6271000,6271335,6271882,6272240,6272608,6273018,6274260,6274757,6275267,6275997,6276583,6277138,6278141,6278947,6279403,6279961,6281183	
chr10	6281535	6286760	6282812	6286619	-	Cre10.g465000.t1.1	Cre10.g465000.t1.1		6286426,6286300,6285729,6285439,6285129,6284800,6284574,6284199,6283718,6283416,6283071,6281535	6286760,6286341,6285743,6285641,6285327,6285002,6284596,6284404,6284005,6283524,6283218,6282884	null-allele passenger mutation was isolated (PMID 29743196)
chr10	6287232	6288340	6287365	6287933	-	Cre10.g465026.t1.1	Cre10.g465026.t1.1		6287855,6287457,6287232	6288340,6287540,6287389	
chr10	6289321	6293862	6289484	6293348	+	Cre10.g465050.t1.1	Cre10.g465050.t1.1		6289321,6290187,6290554,6290864,6291109	6290039,6290420,6290721,6290982,6293862	
chr10	6293911	6295372	6294802	6295140	+	Cre10.g465101.t1.1	Cre10.g465101.t1.1		6293911,6294611,6294885	6294298,6294814,6295372	
chr10	6295517	6299410	6297734	6299316	-	Cre10.g465150.t1.2	Cre10.g465150.t1.2		6295517	6299410	
chr10	6299475	6303190	6299578	6303058	-	Cre10.g465200.t1.2	Cre10.g465200.t1.2		6302958,6302512,6301293,6301024,6300377,6299475	6303190,6302610,6301325,6301074,6300764,6300215	
chr10	6303970	6305390	6305137	6305363	-	Cre10.g465226.t1.1	Cre10.g465226.t1.1		6303970	6305390	
chr10	6307020	6309150	6307393	6308934	-	RSP11	Cre10.g465250.t1.2		6308901,6308715,6308465,6307802,6307020	6309150,6308809,6308588,6308047,6307510	Flagellar radial spoke protein 11 (RSP11) at radial spoke stalk; containing an RIIa domain initially found in the regulatory subunit of cAMP dependent protein kinase. Gene originally termed PF25 [PMID: 16507594; PMID: 7204490; PMID: 16267272; GI:83284717].
chr10	6309215	6328590	6310286	6328483	-	Cre10.g465300.t1.1	Cre10.g465300.t1.1		6328349,6328201,6327865,6325781,6325548,6325239,6324776,6324512,6324265,6322701,6318764,6317712,6317245,6316755,6316409,6316023,6315344,6311103,6309215	6328590,6328279,6328000,6327672,6325647,6325337,6324954,6324536,6324356,6324015,6322625,6318434,6317478,6316836,6316501,6316178,6315649,6315030,6310957	null-allele mutant was isolated (PMID 29743196)
chr10	6328735	6335560	6330578	6335175	-	Cre10.g465350.t1.2	Cre10.g465350.t1.2		6335344,6335070,6334802,6334543,6334280,6334017,6333812,6333531,6333172,6332910,6332660,6331950,6330812,6328735	6335560,6335186,6334943,6334680,6334417,6334154,6333891,6333582,6333309,6333047,6332785,6332263,6330988,6330632	
chr10	6336085	6338100	6336521	6336927	-	Cre10.g465375.t1.1	Cre10.g465375.t1.1		6338010,6337233,6336085	6338100,6337395,6336964	
chr10	6338221	6342391	6338375	6342227	+	Cre10.g465400.t1.2	Cre10.g465400.t1.2		6338221,6338917,6339670,6339949,6340796,6341500	6338552,6339102,6339750,6340413,6341289,6342391	
chr10	6342451	6350332	6342673	6349381	+	Cre10.g465450.t1.2	Cre10.g465450.t1.2		6342451,6343269,6343819,6344334,6344974,6345836,6346281,6346523,6346959,6347926,6348601,6348877	6343161,6343500,6343980,6344417,6345576,6346102,6346373,6346563,6347067,6348072,6348681,6350332	
chr10	6351871	6355120	6352417	6355097	-	Cre10.g465500.t1.1	Cre10.g465500.t1.1		6354995,6354735,6354397,6353886,6353563,6352806,6351871	6355120,6354876,6354472,6354108,6353637,6353323,6352574	
chr10	6351871	6355120	6352417	6354901	-	Cre10.g465500.t2.1	Cre10.g465500.t2.1		6354735,6354397,6353886,6353563,6352806,6351871	6355120,6354472,6354108,6353637,6353323,6352574	
chr10	6355995	6366372	6357917	6365814	-	CLPD1	Cre10.g465550.t1.1		6365514,6365233,6364925,6364536,6364152,6363666,6363147,6362893,6362525,6362106,6361648,6361310,6360886,6360350,6359997,6359657,6359152,6358811,6358477,6355995	6366372,6365430,6365022,6364623,6364217,6363838,6363305,6363004,6362650,6362219,6361884,6361381,6361038,6360511,6360102,6359811,6359313,6358957,6358598,6358269	probably chloroplastic (by homology); possibly acting as ATP-dependent subunit of Clp protease
chr10	6366897	6369092	6367394	6368722	-	Cre10.g465575.t1.1	Cre10.g465575.t1.1		6368919,6368635,6368142,6366897	6369092,6368758,6368579,6367499	
chr10	6369813	6373466	6369858	6371406	+	Cre10.g465600.t1.2	Cre10.g465600.t1.2		6369813,6370362,6371194	6370164,6370866,6373466	
chr10	6373723	6389424	6373969	6388792	+	Cre10.g465650.t1.2	Cre10.g465650.t1.2		6373723,6374408,6375171,6376977,6377558,6378030,6378239,6378580,6378821,6379155,6380123,6380686,6381116,6381519,6382177,6383061,6383431,6383796,6384416,6384778,6385244,6385673,6386210,6387024,6387688,6388060	6373977,6374931,6376741,6377183,6377713,6378059,6378289,6378642,6378907,6379310,6380306,6380924,6381289,6381803,6382407,6383159,6383505,6383963,6384523,6384969,6385498,6385912,6386752,6387416,6387852,6389424	
chr10	6389483	6396324	6389512	6395600	+	Cre10.g465700.t1.2	Cre10.g465700.t1.2		6389483,6390172,6390841,6391276,6392126,6392635,6393040,6393523,6394290,6394636,6394893	6389960,6390467,6390942,6391871,6392355,6392723,6393204,6393840,6394375,6394670,6396324	
chr10	6396873	6400447	6398231	6398764	+	Cre10.g465726.t1.1	Cre10.g465726.t1.1		6396873,6397770,6398149,6398630	6397448,6397910,6398289,6400447	
chr10	6400413	6405434	6400899	6405120	+	Cre10.g465750.t1.1	Cre10.g465750.t1.1		6400413,6400724,6401064,6401469,6401690,6402145,6402695,6403186,6403703,6404179,6404507,6404873	6400631,6400947,6401195,6401504,6401864,6402359,6402964,6403392,6403903,6404289,6404613,6405434	
chr10	6405583	6406204	6405647	6406122	+	Cre10.g465757.t1.1	Cre10.g465757.t1.1		6405583	6406204	
chr10	6406208	6408412	6406773	6408048	-	CSB40	Cre10.g465763.t1.1		6408027,6407584,6407355,6407062,6406208	6408412,6407946,6407465,6407239,6406773	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr10	6411073	6421204	6411418	6419933	+	Cre10.g465793.t1.1	Cre10.g465793.t1.1		6411073,6412499,6412944,6413749,6414461,6416462,6419202,6419883	6411473,6412799,6413415,6414222,6416264,6417807,6419358,6421204	
chr10	6421261	6423002	6421824	6422831	-	Cre10.g465822.t1.2	Cre10.g465822.t1.2		6422814,6422705,6422535,6422287,6421261	6423002,6422731,6422628,6422409,6422067	
chr10	6423107	6429212	6423670	6428514	-	Cre10.g465850.t1.2	Cre10.g465850.t1.2		6428998,6428689,6428503,6427120,6426697,6426290,6425582,6424955,6424506,6424185,6423107	6429212,6428812,6428571,6428203,6426840,6426421,6425740,6425122,6424637,6424268,6423829	
chr10	6429668	6432962	6430309	6432707	-	CDKA1	Cre10.g465900.t1.2		6432698,6432402,6432195,6431974,6431695,6431081,6430692,6429668	6432962,6432586,6432315,6432023,6431818,6431215,6430891,6430466	P34 cdc2/CDK1 ortholog; orthologous to plant CDKA; PSTAIRE motif; null mutant delays G1/S; null-allele mutant was isolated (PMID 29743196)
chr10	6433023	6434822	6433587	6434721	-	CGL148	Cre10.g465950.t1.2		6434448,6434020,6433023	6434822,6434253,6433770	
chr10	6434877	6435932	6434900	6435816	-	Cre10.g466000.t1.2	Cre10.g466000.t1.2		6435750,6435509,6435145,6434877	6435932,6435631,6435235,6434935	
chr10	6436033	6438648	6436277	6437866	+	Cre10.g466050.t1.2	Cre10.g466050.t1.2		6436033,6436641,6437167	6436450,6436974,6438648	
chr10	6436033	6438648	6436692	6437866	+	Cre10.g466050.t2.1	Cre10.g466050.t2.1		6436033,6436638,6437167	6436450,6436974,6438648	
chr10	6440848	6442982	6441835	6442706	-	Cre10.g466100.t1.2	Cre10.g466100.t1.2		6442432,6442199,6440848	6442982,6442345,6441835	
chr10	6445283	6450267	6445522	6449854	+	Cre10.g466150.t1.2	Cre10.g466150.t1.2		6445283,6446060,6447744,6448133,6448503,6449038	6445759,6447208,6447823,6448264,6448782,6450267	
chr10	6450503	6452774	6450651	6451196	+	Cre10.g466175.t1.2	Cre10.g466175.t1.2		6450503,6450734	6450663,6452774	
chr10	6455473	6459944	6455708	6458292	+	CYCAB1	Cre10.g466200.t1.1		6455473,6455868,6456027,6456156,6456306,6456605,6457125,6457650	6455774,6455948,6456066,6456214,6456350,6456889,6457421,6459944	Related to A/B cyclins. Appears to be Volvocalean specific subclade of A and B type cyclins.
chr10	6463037	6471502	6463452	6471427	-	PRP20	Cre10.g466250.t1.2		6471286,6471081,6470793,6470437,6469807,6469100,6468537,6468123,6467669,6467038,6466340,6465594,6465170,6464494,6463983,6463037	6471502,6471125,6470884,6470563,6469991,6469445,6468701,6468245,6467839,6467409,6466699,6465788,6465452,6464873,6464090,6463626	involved in pre-mRNA splicing.  Contains WD-repeats and related to PRP19
chr10	6471633	6477294	6471825	6476794	+	Cre10.g466300.t1.2	Cre10.g466300.t1.2		6471633,6471992,6472192,6472453,6473164,6473487,6474001,6474871,6475285,6476246,6476601	6471895,6472026,6472309,6472504,6473265,6473766,6474176,6475043,6475859,6476382,6477294	
chr10	6478243	6485152	6480638	6484854	-	Cre10.g466350.t1.1	Cre10.g466350.t1.1		6484797,6484620,6484477,6484329,6483324,6482671,6482202,6481815,6478243	6485152,6484649,6484509,6484403,6483479,6482763,6482396,6481979,6481562	Related to OST1 of Arabidopsis
chr10	6486587	6490912	6486794	6490795	-	Cre10.g466400.t1.1	Cre10.g466400.t1.1		6490646,6490026,6489484,6489143,6488471,6487789,6487334,6486587	6490912,6490380,6489555,6489263,6488598,6487935,6487375,6487007	
chr10	6486587	6490912	6486794	6490795	-	Cre10.g466400.t2.1	Cre10.g466400.t2.1		6490646,6490026,6489484,6489143,6488471,6487789,6486587	6490912,6490380,6489555,6489263,6488598,6487935,6487007	
chr10	6491013	6496684	6491125	6495909	+	Cre10.g466450.t1.1	Cre10.g466450.t1.1		6491013,6491214,6491393,6491857,6492675,6493075,6493591,6493857,6494573,6495064,6495824	6491143,6491312,6491693,6492443,6492764,6493230,6493650,6494284,6494623,6495519,6496684	
chr10	6497237	6500152	6498608	6500021	-	CPL12	Cre10.g466500.t1.2		6499929,6499714,6499551,6499420,6499261,6498877,6497237	6500152,6499823,6499637,6499474,6499309,6499033,6498652	Glyoxylase family protein - has a strong match with lactoylglutathione lyase of Arabidopsis
chr10	6500797	6501922	6501423	6501828	-	Cre10.g466526.t1.1	Cre10.g466526.t1.1		6501603,6500797	6501922,6501450	
chr10	6502273	6507514	6502507	6507055	+	Cre10.g466550.t1.2	Cre10.g466550.t1.2		6502273,6502852,6503154,6503580,6504013,6504570,6505064,6505538,6506257,6506574,6507012	6502667,6502982,6503290,6503775,6504189,6504812,6505195,6506081,6506438,6506713,6507514	
chr10	6507527	6510262	6507548	6510003	-	Cre10.g466600.t1.1	Cre10.g466600.t1.1		6509973,6509660,6509205,6508576,6507960,6507527	6510262,6509920,6509410,6509037,6508047,6507674	
chr10	6507527	6510262	6507548	6510003	-	Cre10.g466600.t2.1	Cre10.g466600.t2.1		6509973,6509660,6509205,6508576,6507960,6507527	6510262,6509683,6509410,6509037,6508047,6507674	
chr10	6510393	6513323	6510763	6512752	+	FAP252	Cre10.g466650.t1.2		6510393,6511024,6511629,6512248,6512485	6510819,6511443,6511851,6512340,6513323	Flagellar Associated Protein; found in the flagellar proteome; in basal body proteome as BUG1 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 157384]; Altered pI in DRC mutant axonemes; not conserved
chr10	6513583	6517112	6513902	6517068	-	Cre10.g466700.t1.1	Cre10.g466700.t1.1		6517059,6516396,6516151,6515952,6515525,6515074,6514860,6514432,6514252,6513583	6517112,6516617,6516195,6515996,6515590,6515257,6514921,6514550,6514288,6514109	
chr10	6517293	6521178	6517534	6519740	+	SAT1	Cre10.g466750.t2.1		6517293,6517866,6518268,6518595,6519033,6519311	6517631,6518090,6518380,6518831,6519110,6521178	EC 2.3.1.30; identical to GenBank AAM23309 (PMID 12481091) except for short sequence at beginning of 5' UTR; differs from the other isoform in the 5' UTR; involved in cysteine and methionine biosynthesis; Target-P predicts plastid targeting
chr10	6517206	6521178	6517534	6519740	+	SAT1	Cre10.g466750.t1.1		6517206,6517510,6517866,6518268,6518595,6519033,6519311	6517233,6517631,6518090,6518380,6518831,6519110,6521178	EC 2.3.1.30; identical to GenBank AAM23309 (PMID 12481091) except for short sequence at beginning of 5' UTR; differs from the other isoform in the 5' UTR; involved in cysteine and methionine biosynthesis; Target-P predicts plastid targeting
chr10	6521576	6525594	6521738	6525040	+	Cre10.g466800.t1.1	Cre10.g466800.t1.1		6521576,6521891,6522224,6522501,6522859,6523506,6523839,6524146,6524378,6524994	6521787,6521945,6522365,6522603,6523327,6523566,6523956,6524171,6524490,6525594	
chr10	6525791	6528394	6526145	6528134	-	FKB18	Cre10.g466850.t1.1		6528105,6527779,6527435,6527177,6526790,6525791	6528394,6527834,6527508,6527263,6526942,6526259	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); probably directed to thylakoid lumen (homology to AtFKBP18 and bipartite cTP: 29 + RR motif); present in thylakoid proteome based on mass spectrometric peptide identification [PMID: 17078018]
chr10	6530771	6533872	6532307	6533577	-	Cre10.g466900.t1.2	Cre10.g466900.t1.2		6533396,6533183,6532907,6530771	6533872,6533224,6532954,6532621	
chr10	6533973	6537454	6534220	6536017	+	Cre10.g466950.t1.1	Cre10.g466950.t1.1		6533973,6534507,6534776,6535268	6534421,6534629,6535058,6537454	
chr10	6533973	6537454	6534220	6535067	+	Cre10.g466950.t2.1	Cre10.g466950.t2.1		6533973,6534507,6534776	6534421,6534629,6537454	
chr10	6537470	6540862	6538341	6540698	-	IFT57	Cre10.g467000.t1.2		6540683,6540430,6540338,6540189,6540013,6539658,6539472,6539170,6538920,6537470	6540862,6540615,6540364,6540247,6540100,6539905,6539538,6539313,6539039,6538797	Component of peripheral subcomplex of IFT-B particle
chr10	6540963	6543364	6541157	6543137	+	DAP2	Cre10.g467050.t1.2		6540963,6541515,6541845,6542136,6542488	6541256,6541751,6542027,6542269,6543364	Predominantly cytoplasmic; identified by comparative genomics as being present only in organisms having motile (MOT) cilia; null-allele passenger mutation was isolated (PMID 29743196)
chr10	6543375	6547392	6543755	6547210	-	Cre10.g467100.t1.1	Cre10.g467100.t1.1		6547131,6546473,6546151,6545860,6545616,6545380,6545140,6544869,6544493,6543375	6547392,6546966,6546279,6546005,6545702,6545476,6545241,6544986,6544710,6544373	
chr10	6547513	6550204	6547666	6549282	+	ROC69	Cre10.g467150.t1.1		6547513,6547988,6548462,6548768,6548941,6549200	6547679,6548211,6548626,6548819,6549016,6550204	In Matsuo et al. (2008), roc69 (rhythm of chloroplast) circadian rhythm mutant locus maps near this gene
chr10	6551126	6569587	6551342	6568812	+	ATR1	Cre10.g467200.t1.1		6551126,6551468,6551889,6552140,6552433,6552753,6552941,6553811,6554110,6554872,6555618,6556168,6556343,6556728,6557211,6557521,6557848,6558065,6558331,6558648,6558878,6559238,6559460,6559606,6559794,6560027,6560442,6560774,6561111,6561402,6561624,6561886,6562181,6562503,6562762,6563154,6563634,6563909,6564112,6564593,6564843,6565115,6565289,6565543,6565843,6566083,6566463,6566698,6567040,6567241,6567552,6567840,6568193,6568497	6551363,6551615,6552042,6552255,6552629,6552845,6553084,6553992,6554705,6555521,6556007,6556262,6556547,6557099,6557385,6557744,6557967,6558196,6558525,6558768,6559158,6559369,6559537,6559715,6559943,6560338,6560652,6561009,6561245,6561492,6561755,6562082,6562340,6562601,6563049,6563429,6563765,6564019,6564232,6564737,6565034,6565207,6565406,6565752,6565977,6566124,6566606,6566865,6567128,6567438,6567722,6567981,6568297,6569587	DNA damage sensing protein kinase homolog; related to ataxia telangiectasia RAD3/ATRprotein. PI3K related
chr11	1772882	1781127	1773769	1780996	-	Cre11.g467350.t1.2	Cre11.g467350.t1.2		1780814,1780392,1779835,1779449,1779084,1778663,1778044,1777700,1777125,1776875,1776553,1776186,1775649,1775345,1774623,1774187,1772882	1781127,1780473,1779939,1779560,1779282,1778747,1778246,1777817,1777199,1776996,1776609,1776321,1775782,1775399,1774826,1774314,1773824	
chr11	1781519	1786093	1782819	1785992	-	Cre11.g467400.t1.2	Cre11.g467400.t1.2		1785866,1785666,1785369,1784854,1781519	1786093,1785731,1785455,1784976,1784226	
chr11	1787394	1793135	1787498	1792253	+	SOM3	Cre11.g467450.t1.1		1787394,1788169,1788836,1789261,1789680,1789931,1790494,1791489,1791819,1792075	1787893,1788238,1788930,1789306,1789793,1790122,1791046,1791571,1791877,1793135	
chr11	1793138	1806763	1794267	1806536	-	Cre11.g467500.t1.2	Cre11.g467500.t1.2		1806470,1805995,1805137,1804319,1803716,1803297,1802972,1802423,1801932,1801286,1800759,1800340,1799792,1799421,1798856,1798480,1798211,1797651,1797254,1796930,1796269,1795849,1795386,1794953,1793138	1806763,1806106,1805760,1804501,1803866,1803404,1803150,1802538,1802062,1801459,1800922,1800531,1800093,1799496,1799006,1798561,1798299,1797774,1797394,1797022,1796376,1795929,1795460,1795096,1794426	
chr11	2230	8305	5170	8206	-	Cre11.g467522.t1.1	Cre11.g467522.t1.1		7714,5282,2230	8305,5440,5197	
chr11	8407	13165	8979	13042	-	Cre11.g467523.t1.1	Cre11.g467523.t1.1		10306,9091,8407	13165,9285,9006	
chr11	30440	34699	31266	34534	-	Cre11.g467524.t1.1	Cre11.g467524.t1.1		34473,33109,32893,32668,32356,32113,31918,31639,30440	34699,33222,32992,32738,32423,32163,31980,31737,31434	
chr11	34836	37967	34929	37593	+	Cre11.g467525.t1.1	Cre11.g467525.t1.1		34836,35292,35911,36949,37119,37246	34977,35714,36731,37029,37180,37967	
chr11	37980	40030	38532	39884	-	Cre11.g467526.t1.1	Cre11.g467526.t1.1		39737,39208,38972,37980	40030,39353,39118,38626	
chr11	40146	45687	40531	44270	+	Cre11.g467527.t1.1	Cre11.g467527.t1.1		40146,40522,41110,41466,41754,42192,42526,42894,43387,43830,44114	40325,40715,41325,41626,41849,42311,42612,43070,43614,43952,45687	
chr11	45700	61235	46673	60872	-	CAV4	Cre11.g467528.t1.1		61054,60455,60127,59666,59361,59076,58701,58369,57961,57528,56291,56078,55814,55587,55280,54616,53283,53010,52764,52431,52054,51574,51009,50640,50186,49845,49617,49470,48917,48345,48076,47731,47492,47246,45700	61235,60895,60230,59865,59494,59200,58921,58493,58164,57791,57307,56141,55956,55648,55484,55131,54458,53128,52908,52601,52255,51722,51387,50810,50409,50053,49730,49490,49160,48620,48221,47917,47585,47304,47105	Calcium channel, 4-domain, voltage-dependent, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels
chr11	45700	61425	46673	60872	-	CAV4	Cre11.g467528.t2.1		61330,60455,60127,59666,59361,59076,58701,58369,57961,57528,56291,56078,55814,55587,55280,54616,53283,53010,52764,52431,52054,51574,51009,50640,50186,49845,49617,49470,48917,48345,48076,47731,47492,47246,45700	61425,60895,60230,59865,59494,59200,58921,58493,58164,57791,57307,56141,55956,55648,55484,55131,54458,53128,52908,52601,52255,51722,51387,50810,50409,50053,49730,49490,49160,48620,48221,47917,47585,47304,47105	Calcium channel, 4-domain, voltage-dependent, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels
chr11	45700	61235	46673	60872	-	CAV4	Cre11.g467528.t3.1		61054,60803,60455,60127,59666,59361,59076,58701,58369,57961,57528,56291,56078,55814,55587,55280,54616,53283,53010,52764,52431,52054,51574,51009,50640,50186,49845,49617,49470,48917,48345,48076,47731,47492,47246,45700	61235,60895,60649,60230,59865,59494,59200,58921,58493,58164,57791,57307,56141,55956,55648,55484,55131,54458,53128,52908,52601,52255,51722,51387,50810,50409,50053,49730,49490,49160,48620,48221,47917,47585,47304,47105	Calcium channel, 4-domain, voltage-dependent, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels
chr11	66016	75447	66363	74126	+	Cre11.g467529.t1.1	Cre11.g467529.t1.1		66016,66789,67081,67499,68091,68465,68795,69013,70248,70524,70870,71149,73374,73877	66554,66855,67185,67939,68142,68557,68829,69607,70378,70667,71003,73243,73715,75447	
chr11	75467	82655	76018	82372	-	Cre11.g467530.t1.1	Cre11.g467530.t1.1		82139,81892,81625,81339,80731,80311,79798,79410,78511,77949,77237,75467	82655,81979,81701,81433,80967,80533,80084,79633,78924,78348,77340,77053	null-allele mutant was isolated (PMID 29743196)
chr11	83045	86815	83739	86737	-	Cre11.g467531.t1.1	Cre11.g467531.t1.1		86575,86264,86037,85792,85533,85161,84901,84547,84323,83974,83045	86815,86390,86101,85911,85594,85290,84997,84735,84382,84143,83823	
chr11	86916	89667	88741	89400	+	Cre11.g467532.t1.1	Cre11.g467532.t1.1		86916,87563,87740,88273,88496,88707,89159,89400	87468,87655,88153,88374,88585,89036,89327,89667	
chr11	86916	89667	88741	89400	+	Cre11.g467532.t2.1	Cre11.g467532.t2.1		86916,87563,87740,88273,88496,88707,89212,89400	87468,87655,88153,88374,88585,89036,89327,89667	
chr11	86916	89667	88741	89400	+	Cre11.g467532.t3.1	Cre11.g467532.t3.1		86916,87563,87740,88273,88496,88707,89151,89400	87468,87655,88153,88374,88585,89036,89327,89667	
chr11	89996	91987	90184	91723	+	Cre11.g467533.t1.1	Cre11.g467533.t1.1		89996,90735,91058,91410	90652,90932,91179,91987	
chr11	92410	93655	93158	93508	-	Cre11.g467534.t1.1	Cre11.g467534.t1.1		93371,92410	93655,93189	
chr11	97546	101293	97897	100506	+	MCP26	Cre11.g467535.t1.1		97546,98861,99391,99942,100368	98455,99025,99702,100019,101293	
chr11	101476	110954	102202	109280	+	Cre11.g467536.t1.1	Cre11.g467536.t1.1		101476,102055,102852,103335,108265	101838,102580,103130,108070,110954	
chr11	112966	119337	113267	118400	+	PPR12	Cre11.g467537.t1.1		112966,113613,113858,114157,114512,116333,117366,117947,118246	113376,113735,114080,114370,116182,117212,117814,118047,119337	
chr11	119426	124335	120069	122789	+	GOX8	Cre11.g467538.t1.1		119426,119967,120695,121800,122567	119665,120526,121627,122383,124335	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); in tandem with GOX6 and GOX7
chr11	125056	129137	125767	128459	+	GOX6	Cre11.g467539.t1.1		125056,125684,126343,127481,128246	125308,126191,127275,128064,129137	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); in tandem with GOX8 and GOX7
chr11	132496	137407	133104	136444	+	GOX7	Cre11.g467540.t1.1		132496,133635,134011,135069,135493,135865,136231	133405,133738,134836,135369,135643,135996,137407	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); in tandem with GOX6 and GOX8
chr11	132496	137407	133104	136444	+	GOX7	Cre11.g467540.t2.1		132496,132919,133635,134011,135069,135493,135865,136231	132660,133405,133738,134836,135369,135643,135996,137407	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); in tandem with GOX6 and GOX8
chr11	137410	143795	138772	143607	-	Cre11.g467541.t1.1	Cre11.g467541.t1.1		143460,142685,142106,141292,140820,140336,140062,139600,139330,137410	143795,142844,142490,141427,140867,140583,140176,139782,139417,138954	May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	143926	150806	144222	150608	+	Cre11.g467542.t1.1	Cre11.g467542.t1.1		143926,145505,145855,146938,147274,148188	145109,145785,146745,147065,147976,150806	
chr11	151013	152385	151462	152231	-	Cre11.g467543.t1.1	Cre11.g467543.t1.1		152087,151013	152385,151606	
chr11	152506	155977	152800	155214	+	IDI1	Cre11.g467544.t1.1		152506,152988,153382,153866,154434,155016	152825,153062,153518,154033,154592,155977	Isopentenyl-diphosphate delta-isomerase type 1(isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase ) (IPI) (PMID: 10750717; PMID:9736763); putative chloroplast precursor; may display dual targeting to chloroplast and cytosol
chr11	156529	158290	156605	158130	+	Cre11.g467545.t1.1	Cre11.g467545.t1.1		156529,156941,157395,158081	156851,157108,157750,158290	
chr11	158294	167518	158885	167298	-	Cre11.g467546.t1.1	Cre11.g467546.t1.1		167262,163734,163227,162650,162243,160464,159914,159428,158294	167518,166849,163455,162790,162332,161087,160126,159520,159167	
chr11	167646	172901	167789	172373	+	Cre11.g467547.t1.1	Cre11.g467547.t1.1		167646,168132,168405,169898,170582,171258,171668	167929,168231,169307,169978,170757,171444,172901	
chr11	172903	174488	173381	174136	-	Cre11.g467548.t1.1	Cre11.g467548.t1.1		173724,172903	174488,173524	
chr11	174589	178940	174852	178328	+	Cre11.g467549.t1.1	Cre11.g467549.t1.1		174589,175921,176204,176879,177283,177983	175698,175995,176545,177006,177688,178940	
chr11	1806884	1813071	1806985	1812308	+	Cre11.g467550.t1.2	Cre11.g467550.t1.2		1806884,1807457,1808233,1808640,1809158,1809567,1810190,1810616,1811112,1811474,1812151	1807025,1807626,1808316,1808741,1809271,1809668,1810255,1810757,1811187,1811593,1813071	
chr11	178950	181108	180066	180999	-	Cre11.g467551.t1.1	Cre11.g467551.t1.1		180987,180643,178950	181108,180720,180336	
chr11	213053	223648	213125	223069	-	Cre11.g467552.t1.1	Cre11.g467552.t1.1		222383,220601,219465,219146,218650,217852,217469,217172,216860,216486,215951,215740,215243,214966,214564,213837,213053	223648,220698,219508,219174,218747,218447,217621,217216,216984,216585,216073,215805,215320,215010,214629,213984,213613	
chr11	223849	235930	224014	235257	+	Cre11.g467553.t1.1	Cre11.g467553.t1.1		223849,224406,224920,225569,227351,227756,230110,230586,231194,231708,232129,233275,233646,234020,234339,235137	224314,224516,225014,225619,227465,227845,230184,230642,231232,231815,232217,233339,233761,234070,234419,235930	May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	235989	240850	236369	240779	+	Cre11.g467554.t1.1	Cre11.g467554.t1.1		235989,236596,237094,237588,237975,238635,239081,239622,240077,240408	236382,236681,237243,237647,238031,238775,239164,239882,240146,240850	
chr11	240853	245128	242228	244644	-	Cre11.g467555.t1.1	Cre11.g467555.t1.1		244515,243912,243371,240853	245128,244010,243601,243146	
chr11	245289	255550	245450	254783	+	Cre11.g467556.t1.1	Cre11.g467556.t1.1		245289,246198,246918,247340,247583,247850,248227,248579,249089,249843,250233,250657,250917,251881,252384,252737,253819,254665	245696,246590,247040,247390,247648,248060,248378,248663,249204,250110,250435,250798,251335,252066,252479,253647,254451,255550	null-allele mutant was isolated (PMID 29743196)
chr11	255839	261710	256330	261365	+	Cre11.g467557.t1.1	Cre11.g467557.t1.1		255839,256577,259034,259545,259746,260120	256382,258837,259255,259560,259816,261710	
chr11	266863	272028	267645	271264	-	Cre11.g467558.t1.1	Cre11.g467558.t1.1		269661,266863	272028,269447	
chr11	272703	281938	273897	281778	-	Cre11.g467559.t1.1	Cre11.g467559.t1.1		281775,281656,281479,281074,280391,279905,279639,279058,278521,277684,277035,276057,275693,275167,274307,272703	281938,281709,281568,281157,280480,279994,279747,279182,278667,277809,277316,276674,275759,275331,274425,274098	
chr11	282109	294068	282293	293996	-	DYX1C1	Cre11.g467560.t1.1		293768,293437,292936,292206,291531,289334,288966,287846,286569,285649,285264,284564,284086,283421,282109	294068,293582,293072,292660,291611,289464,289140,287926,286640,285779,285455,284758,284193,283491,283000	
chr11	282109	294068	282293	293996	-	DYX1C1	Cre11.g467560.t2.1		293768,293437,292936,292206,291531,289334,288966,287846,285649,285264,284564,284086,283421,282109	294068,293582,293072,292660,291611,289464,289140,287926,285779,285455,284758,284193,283491,283000	
chr11	294229	296621	294305	295681	+	FAP222	Cre11.g467561.t1.1		294229,294682,295006,295263,295611	294440,294739,295076,295369,296621	
chr11	296949	308639	297188	307126	+	Cre11.g467562.t1.1	Cre11.g467562.t1.1		296949,297415,297825,298509,300775,301464,303856	297284,297495,298316,300422,301209,303644,308639	
chr11	309147	313458	309749	313352	-	Cre11.g467563.t1.1	Cre11.g467563.t1.1		313036,312674,312374,312013,311711,311294,311024,310785,310402,309147	313458,312818,312483,312143,311773,311368,311105,310815,310486,309857	
chr11	313629	317100	313762	316535	+	ARL16	Cre11.g467564.t1.1		313629,314291,314913,315496,315728,316090,316376	313852,314327,315027,315545,315813,316200,317100	ARF-like 16, a member of the ARF/Sar1 GTPase family. Orthologs in a wide array of eukaryotes (ARL16 in human) but function yet to be determined
chr11	317212	324148	320161	324101	-	Cre11.g467565.t1.1	Cre11.g467565.t1.1		320244,317212	324148,320183	
chr11	324746	326748	325917	326332	-	Cre11.g467566.t1.1	Cre11.g467566.t1.1		326256,324746	326748,326123	
chr11	327092	331330	327182	331193	-	UBQ1	Cre11.g467567.t1.1		331145,330972,330143,329760,329377,328994,328611,328229,327851,327469,327092	331330,331026,330370,329987,329604,329221,328838,328456,328078,327696,327313	Post-translationally modifies proteins to tag them for proteasome-mediated degradation, internalization etc.; contains two ubiquitin domains in tandem (alternatively spliced form contains only one); post-translationally modifies proteins to tag them for p
chr11	331493	336818	331866	336583	-	Cre11.g467568.t1.1	Cre11.g467568.t1.1		336279,335978,335621,335288,334816,334540,333732,332568,331493	336818,336030,335712,335404,334934,334597,334075,333486,331866	
chr11	337493	339583	338289	339514	-	ATPD	Cre11.g467569.t1.1		339049,338736,337493	339583,338924,338295	ATP synthase CF1 delta chain, chloroplast precursor [gi:2493039, PMID: 8543042]
chr11	342079	343380	342293	343172	+	Cre11.g467570.t1.1	Cre11.g467570.t1.1		342079,342544,343016	342365,342720,343380	
chr11	343573	344938	343608	344816	-	Cre11.g467571.t1.1	Cre11.g467571.t1.1		344745,344597,344092,343774,343573	344938,344623,344397,343863,343608	
chr11	345319	346800	345763	346330	+	Cre11.g467572.t1.1	Cre11.g467572.t1.1		345319,345617,345762,346126	345553,345703,345820,346800	
chr11	345319	346900	345763	346330	+	Cre11.g467572.t2.1	Cre11.g467572.t2.1		345319,345762,346126	345703,345820,346900	
chr11	348422	351813	348750	351148	+	LHCA3	Cre11.g467573.t1.1		348422,348913,349131,349806,350261,350613,350871,351131	348774,348999,349208,350108,350348,350701,350988,351813	
chr11	351816	358381	352383	358261	-	Cre11.g467574.t2.1	Cre11.g467574.t2.1		358102,357396,356846,356175,355789,354258,353431,351816	358381,357686,357044,356323,355929,354353,353609,352468	
chr11	354662	358381	355198	358261	-	Cre11.g467574.t3.1	Cre11.g467574.t3.1		358102,357396,356846,356175,355793,354662	358381,357686,357044,356323,355929,355283	
chr11	351806	354431	352383	354384	-	Cre11.g467574.t1.1	Cre11.g467574.t1.1		354258,353431,351806	354431,353609,352468	
chr11	358482	373014	358567	372643	+	CLPB4	Cre11.g467575.t1.1		358482,359537,360344,360803,361273,361727,361969,362621,363057,363527,364135,364800,365180,365637,366092,366557,367734,368220,368723,369205,369488,369925,370390,371017,371429,371851,372208	358840,359655,360446,360915,361405,361769,362159,362761,363218,363589,364204,364859,365289,365770,366152,366643,367846,368338,368787,369271,369567,369999,370545,371094,371531,371954,373014	predicted cytosolic
chr11	358482	373014	358567	372643	+	CLPB4	Cre11.g467575.t2.1		358482,359537,360344,360803,361273,361727,361969,362621,363057,363527,364135,365180,365637,366092,366557,367734,368220,368723,369205,369488,369925,370390,371017,371429,371851,372208	358840,359655,360446,360915,361405,361769,362159,362761,363218,363589,364204,365289,365770,366152,366643,367846,368338,368787,369271,369567,369999,370545,371094,371531,371954,373014	predicted cytosolic
chr11	373133	377811	373720	377520	-	Cre11.g467576.t1.1	Cre11.g467576.t1.1		377672,377417,377234,376834,376605,376263,375930,375572,375293,375098,374672,374404,374065,373133	377811,377524,377248,376992,376652,376348,376004,375661,375324,375128,374840,374465,374096,373766	
chr11	373133	377811	373720	377520	-	Cre11.g467576.t2.1	Cre11.g467576.t2.1		377672,377432,377234,376834,376605,376263,375930,375572,375293,375098,374672,374404,374065,373133	377811,377524,377248,376992,376652,376348,376004,375661,375324,375128,374840,374465,374096,373766	
chr11	373133	377811	373720	377520	-	Cre11.g467576.t3.1	Cre11.g467576.t3.1		377672,377417,376834,376605,376263,375930,375572,375293,375098,374672,374404,374065,373133	377811,377524,376992,376652,376348,376004,375661,375324,375128,374840,374465,374096,373766	
chr11	377922	383803	378241	382755	+	Cre11.g467577.t1.1	Cre11.g467577.t1.1		377922,378732,379114,379609,380156,380675,382004	378295,378953,379338,379941,380257,381675,383803	
chr11	383976	386621	384139	386490	-	Cre11.g467578.t1.1	Cre11.g467578.t1.1		386586,386363,385965,384775,383976	386621,386499,386070,384853,384208	
chr11	388115	391211	388866	391051	-	CSC6	Cre11.g467579.t1.1		390601,390401,389869,389433,388115	391211,390466,390193,389585,389162	function unknown; homologs in Gonium, not Volvox
chr11	391610	402971	393076	402616	-	FAP370	Cre11.g467580.t1.1		400726,396238,395700,395339,394526,393650,391610	402971,400572,395874,395469,394933,394213,393415	Cr specific protein
chr11	403622	410991	404582	409400	+	Cre11.g467581.t1.1	Cre11.g467581.t1.1		403622,404166,405018,407538,408255,408599	403853,404684,407112,407965,408419,410991	
chr11	403622	410991	404582	409400	+	Cre11.g467581.t2.1	Cre11.g467581.t2.1		403622,404166,405018,407538,408255,408599	403853,404684,407112,407941,408419,410991	
chr11	411152	413586	411336	412519	+	FAP306	Cre11.g467582.t1.1		411152,411745,412080,412503	411655,411827,412231,413586	
chr11	414042	419244	414240	418308	+	Cre11.g467583.t1.1	Cre11.g467583.t1.1		414042,415986,418308	415625,418257,419244	
chr11	419312	423986	419624	422763	+	Cre11.g467584.t1.1	Cre11.g467584.t1.1		419312,420122,420924,421512,422299	419795,420616,421322,422064,423986	
chr11	424042	428604	424132	427379	+	Cre11.g467585.t1.1	Cre11.g467585.t1.1		424042,425220,425608,426149,426915	424141,425306,426006,426701,428604	
chr11	425193	428604	425213	427379	+	Cre11.g467585.t2.1	Cre11.g467585.t2.1		425193,425608,426149,426915	425306,426006,426701,428604	
chr11	430502	434961	431269	433744	+	Cre11.g467586.t1.1	Cre11.g467586.t1.1		430502,431932,432515,433280	431623,432318,433067,434961	
chr11	434966	438294	436000	438179	-	Cre11.g467587.t1.1	Cre11.g467587.t1.1		438008,437256,436561,434966	438294,437681,436947,436363	
chr11	439960	446071	442676	445741	-	Cre11.g467588.t1.1	Cre11.g467588.t1.1		445570,444817,444122,443371,439960	446071,445242,444508,443923,443140	
chr11	446121	452211	448827	451885	-	Cre11.g467589.t1.1	Cre11.g467589.t1.1		451714,450961,450266,449522,446121	452211,451386,450652,450074,449291	
chr11	453755	457001	454917	456682	-	Cre11.g467590.t1.1	Cre11.g467590.t1.1		456908,456618,456484,456192,455651,453755	457001,456702,456525,456282,455787,455261	
chr11	457142	462253	457355	461783	+	Cre11.g467591.t1.1	Cre11.g467591.t1.1		457142,457774,458469,458716,459496,460011,460615,461042,461421,461684	457561,458056,458573,459043,459617,460122,460703,461119,461492,462253	
chr11	462302	470833	463267	469331	+	Cre11.g467592.t1.1	Cre11.g467592.t1.1		462302,463026,463532,464218,464644,465015,465524,465912,467480,467786,468315,469111	462592,463361,463700,464372,464777,465097,465604,467038,467591,468008,468688,470833	
chr11	470916	472941	471803	472720	-	Cre11.g467593.t1.1	Cre11.g467593.t1.1		472643,470916	472941,472386	
chr11	473142	474946	473298	474207	+	Cre11.g467594.t1.1	Cre11.g467594.t1.1		473142,473630	473375,474946	
chr11	475632	478437	475769	476873	+	Cre11.g467595.t1.1	Cre11.g467595.t1.1		475632,476308	475846,478437	
chr11	481795	488361	482445	488085	-	Cre11.g467596.t1.1	Cre11.g467596.t1.1		487968,487626,487207,486426,485965,485491,485260,484917,484139,483802,483291,482856,481795	488361,487720,487330,486690,486050,485547,485326,484975,484597,483870,483439,483042,482487	
chr11	488711	508561	489440	508034	-	Cre11.g467597.t1.1	Cre11.g467597.t1.1		507953,507419,506983,506477,506005,505759,505295,504700,504538,504089,503550,502947,502479,501923,501448,501016,500578,500166,499612,498991,498550,498202,497572,497156,496652,495623,495112,494543,493709,493263,492727,492370,491851,491334,491097,490722,490445,489986,488711	508561,507679,507031,506613,506133,505800,505372,504809,504589,504230,503674,503044,502597,502241,501574,501170,500650,500219,499697,499091,498660,498354,497839,497298,496807,495759,495193,494663,493826,493336,492821,492408,491984,491382,491137,490825,490504,490132,489534	May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	508662	518198	508888	515315	+	Cre11.g467598.t1.1	Cre11.g467598.t1.1		508662,509359,510342,510566,511189,511858,512271,513868,514221,514745,515216	508952,509527,510467,510900,511580,512085,513636,513950,514400,514885,518198	
chr11	518778	520575	519382	520417	-	Cre11.g467599.t1.1	Cre11.g467599.t1.1		520340,518778	520575,519956	
chr11	1813212	1819113	1814398	1818476	-	Cre11.g467600.t1.1	Cre11.g467600.t1.1		1818728,1817804,1817494,1817189,1816770,1816537,1815969,1815562,1813212	1819113,1818492,1817604,1817263,1816989,1816572,1816238,1815789,1815114	
chr11	520726	522587	520992	521923	+	Cre11.g467601.t1.1	Cre11.g467601.t1.1		520726,521322	521069,522587	
chr11	522646	535727	523436	534778	+	Cre11.g467602.t1.1	Cre11.g467602.t1.1		522646,524144,524379,524656,524923,525200,525477,525744,526011,526288,526564,526840,527107,527384,527661,527938,528205,528472,528749,529016,529293,529570,529846,530122,530399,530676,530953,531230,531496,531773,532050,532327,532604,532880,534778	523616,524229,524468,524745,525012,525289,525566,525833,526100,526377,526653,526929,527196,527473,527750,528027,528294,528561,528838,529105,529382,529659,529935,530211,530488,530765,531042,531319,531585,531862,532139,532416,532693,533907,535727	
chr11	535730	537612	536568	537467	-	Cre11.g467603.t1.1	Cre11.g467603.t1.1		537248,536964,536699,535730	537612,537150,536735,536568	
chr11	538566	544177	538958	542376	+	Cre11.g467604.t1.1	Cre11.g467604.t1.1		538566,541443	541064,544177	
chr11	544446	555482	544878	553619	+	Cre11.g467605.t1.1	Cre11.g467605.t1.1		544446,545087,545447,546828,549826,550218,550420,550822,552037,552439,552806	544894,545145,546601,549515,549979,550291,550680,551727,552153,552516,555482	null-allele mutant was isolated (PMID 29743196)
chr11	555606	557331	555918	556195	+	Cre11.g467606.t1.1	Cre11.g467606.t1.1		555606,556145	556045,557331	
chr11	557466	562134	557543	561473	+	Cre11.g467607.t1.1	Cre11.g467607.t1.1		557466,557957,558505,558745,558929,559145,559811,560258,560748,561213	557796,558391,558593,558785,559018,559359,559878,560474,560942,562134	
chr11	562486	570827	562823	569490	+	Cre11.g467608.t1.1	Cre11.g467608.t1.1		562486,563197,563475,563754,564713,564933,565340,565650,566316,566670,566956,567653,568135,568379,569062,569411	562917,563236,563565,564283,564758,565064,565462,565724,566470,566787,567165,567765,568152,568515,569158,570827	
chr11	562486	570827	562823	569490	+	Cre11.g467608.t2.1	Cre11.g467608.t2.1		562486,563197,563475,563754,564713,564933,565340,565650,566316,566670,566956,567653,568379,569062,569411	562917,563236,563565,564283,564758,565064,565462,565724,566470,566787,567165,567765,568515,569158,570827	
chr11	576740	586565	577543	586427	-	Cre11.g467609.t1.1	Cre11.g467609.t1.1		586284,586011,584976,584553,584152,583590,583247,582818,582464,582127,581610,580910,579206,578689,578335,578032,576740	586565,586090,585732,584654,584203,583937,583342,582967,582550,582192,581745,581184,579331,578871,578433,578160,577594	May contain additional coding sequence in intronic N-island PMID: 27175017; null-allele mutant was isolated (PMID 29743196)
chr11	586986	597757	587118	597231	+	Cre11.g467610.t1.1	Cre11.g467610.t1.1		586986,587348,587861,588155,588561,588924,589486,590161,590554,590981,591535,592213,592605,593329,593715,594061,594361,594675,595036,595892,596214,596594,597126	587205,587452,587920,588226,588629,589017,589577,590289,590631,591142,591654,592299,592709,593475,593822,594177,594417,594752,595218,596023,596310,596730,597757	
chr11	597760	606665	599214	606469	-	Cre11.g467611.t1.1	Cre11.g467611.t1.1		606364,606189,605828,605480,604922,604497,604107,603612,602879,602215,601539,601179,600862,600189,597760	606665,606295,605912,605599,604999,604594,604192,603681,603014,602292,601623,601225,600918,600505,599320	
chr11	606791	613535	607335	613460	-	Cre11.g467612.t1.1	Cre11.g467612.t1.1		613354,613116,612847,612450,612085,611708,611006,610581,609132,608745,608454,607788,606791	613535,613225,612945,612588,612188,611779,611116,610664,609197,608785,608505,607852,607543	
chr11	617120	626505	618848	626354	-	Cre11.g467613.t1.1	Cre11.g467613.t1.1		626284,625877,625354,624713,624362,623755,623055,622678,622250,621693,621380,620943,620578,620203,619673,619284,617120	626505,626083,625560,624922,624571,623967,623264,622887,622459,621902,621586,621149,620784,620409,619879,619493,618937	
chr11	626580	631025	626695	630931	-	Cre11.g467614.t1.1	Cre11.g467614.t1.1		630873,630532,630139,629663,629462,629043,628560,628307,628080,627673,627208,626861,626580	631025,630690,630198,629836,629512,629102,628673,628393,628148,627879,627417,627067,626700	
chr11	631156	633837	631214	633359	+	Cre11.g467615.t1.1	Cre11.g467615.t1.1		631156,631388,631715,631922,632268,632678,633008,633345	631278,631537,631774,631998,632409,632737,633124,633837	
chr11	633842	641015	634383	640278	-	IFT56	Cre11.g467616.t1.1		640224,639981,639776,639077,638591,637803,637392,637032,636436,635997,635584,634994,633842	641015,640151,639898,639235,638647,637946,637505,637172,636618,636066,635723,635080,634605	TPR protein; belongs to core of IFT-B particle
chr11	644486	648157	644590	647365	+	LCI19	Cre11.g467617.t1.1		644486,645047,645388,645937,646263,646467,646900,647244	644800,645123,645562,646049,646287,646541,646985,648157	Putative gamma hydroxybutyrate dehydrogenase catalyzes the conversion of succinic semialdehyde to gamma hydroxybutyrate at the branch pathway of GABA shunt. Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]. Acclim
chr11	648206	652091	648264	651564	+	Cre11.g467618.t1.1	Cre11.g467618.t1.1		648206,648568,650898	648335,650725,652091	
chr11	652166	660327	652190	659939	+	Cre11.g467619.t1.1	Cre11.g467619.t1.1		652166,652891,654060,654993,655435,656103	652526,653907,654139,655064,655799,660327	
chr11	660367	667905	660780	667878	-	Cre11.g467620.t1.1	Cre11.g467620.t1.1		667842,667675,667517,667298,666838,666357,665931,665467,664986,664639,664236,663764,663271,662869,662523,662099,661706,660367	667905,667749,667594,667404,666916,666434,666030,665564,665066,664785,664307,663853,663412,663035,662621,662245,661822,661368	
chr11	670570	674355	671591	674206	-	CSU7	Cre11.g467621.t1.1		673972,673627,672999,672833,670570	674355,673893,673511,672910,672509	probably tranposon-derived
chr11	670570	674355	671591	674206	-	CSU7	Cre11.g467621.t2.1		673972,673627,672999,672833,670570	674355,673893,673511,672910,672503	probably tranposon-derived
chr11	680217	685228	680613	684516	+	Cre11.g467622.t1.1	Cre11.g467622.t1.1		680217,680558,681025,681534,681974,682528,682797,683141,683670,684065,684447	680400,680797,681175,681651,682108,682588,682857,683177,683810,684142,685228	
chr11	685517	691302	685862	690986	+	Cre11.g467623.t1.1	Cre11.g467623.t1.1		685517,688268,688850,689051,689691,690203	687927,688407,688915,689158,689804,691302	
chr11	685517	691302	685862	690986	+	Cre11.g467623.t2.1	Cre11.g467623.t2.1		685517,688268,688850,689051,689691,690203	687927,688386,688915,689158,689804,691302	
chr11	691367	698749	691693	698219	+	Cre11.g467624.t1.1	Cre11.g467624.t1.1		691367,693145,693665,693962,694488,694889,697181	692870,693263,693730,694075,694601,697051,698749	
chr11	698827	706448	699127	705351	+	Cre11.g467626.t1.1	Cre11.g467626.t1.1		698827,700251,700780,701576,704250	699964,700559,701211,703975,706448	null-allele passenger mutation was isolated (PMID 29743196)
chr11	706557	712788	706720	712435	+	Cre11.g467627.t1.1	Cre11.g467627.t1.1		706557,706926,707340,707584,707877,708143,708553,708921,709296,710118,710432,710971,711246,711889,712420	706809,707061,707403,707643,707929,708301,708697,709117,709364,710202,710562,711077,711513,711996,712788	
chr11	712791	716036	713266	715630	-	Cre11.g467628.t1.1	Cre11.g467628.t1.1		715436,715064,714380,712791	716036,715340,714949,714211	
chr11	717067	743508	717486	742005	+	Cre11.g467629.t1.1	Cre11.g467629.t1.1		717067,717797,718024,718280,718737,719056,719389,720302,720603,720901,721248,721611,724058,724576,724818,725178,725456,725799,726212,726664,727121,727388,727741,728088,728445,728966,729519,729852,730270,730533,731011,731399,731587,731943,732619,732916,733993,734255,735419,736064,736336,736601,736855,737256,737617,737895,738210,738435,739067,739355,739649,740022,740330,740659,741079,741526,741755,741957	717560,717848,718119,718405,718862,719121,719458,720396,720680,721002,721355,721729,724162,724642,724901,725317,725542,725876,726344,726793,727234,727502,727811,728217,728765,729273,729601,730019,730362,730730,731153,731462,731760,732460,732754,733206,734040,735223,735797,736146,736494,736723,736989,737405,737676,738021,738301,738913,739208,739474,739775,740170,740497,740829,741364,741592,741806,743508	
chr11	717067	743508	717486	742005	+	Cre11.g467629.t2.1	Cre11.g467629.t2.1		717067,717797,718024,718280,718737,719056,719389,720302,720603,720901,721248,721611,724576,724818,725178,725456,725799,726212,726664,727121,727388,727741,728088,728445,728966,729519,729852,730270,730533,731011,731399,731587,731943,732619,732916,733993,734255,735419,736064,736336,736601,736855,737256,737617,737895,738210,738435,739067,739355,739649,740022,740330,740659,741079,741526,741755,741957	717560,717848,718119,718405,718862,719121,719458,720396,720680,721002,721355,721729,724642,724901,725317,725542,725876,726344,726793,727234,727502,727811,728217,728765,729273,729601,730019,730362,730730,731153,731462,731760,732460,732754,733206,734040,735223,735797,736146,736494,736723,736989,737405,737676,738021,738301,738913,739208,739474,739775,740170,740497,740829,741364,741592,741806,743508	
chr11	743511	748564	743674	748434	-	AMI2	Cre11.g467630.t1.1		748397,747992,747531,747091,746901,746444,745608,745190,744925,744489,744287,743511	748564,748239,747764,747257,746913,746610,745785,745297,745035,744611,744358,743839	
chr11	743511	748564	743674	748434	-	AMI2	Cre11.g467630.t2.1		748397,747992,747531,746444,745608,745190,744925,744489,744287,743511	748564,748239,747764,746610,745785,745297,745035,744611,744358,743839	
chr11	743511	748564	743674	748434	-	AMI2	Cre11.g467630.t3.1		748397,747992,747531,747091,745608,745190,744925,744489,744287,743511	748564,748239,747764,747257,745785,745297,745035,744611,744358,743839	
chr11	748857	754148	749310	753296	+	CGL90	Cre11.g467631.t1.1		748857,749625,749842,750114,750511,750999,751613,752089,752465	749442,749672,749901,750278,750680,751113,751716,752236,754148	
chr11	748857	754148	749310	753647	+	CGL90	Cre11.g467631.t2.1		748857,749625,749842,750114,750511,750999,751613,752089,752465,753583	749442,749672,749901,750278,750680,751113,751716,752236,753111,754148	
chr11	754207	762481	754357	761812	+	Cre11.g467632.t1.1	Cre11.g467632.t1.1		754207,754838,755692,756010,756497,757240,757683,757920,758158,758535,758885,759173,759684,759899,760374,760835,761170,761473	754511,755441,755872,756295,756948,757446,757742,757975,758307,758656,758952,759373,759755,760088,760507,760916,761270,762481	
chr11	762500	768671	763001	768644	-	Cre11.g467633.t1.1	Cre11.g467633.t1.1		768400,768014,767629,767266,766679,766329,765747,765517,765221,764859,764489,763917,763592,762500	768671,768093,767690,767359,766793,766402,765918,765574,765362,764915,764571,764123,763643,763271	
chr11	768807	775538	768934	774582	+	Cre11.g467634.t1.1	Cre11.g467634.t1.1		768807,769164,770456,771217,773466	768988,770285,771037,773322,775538	
chr11	775627	779715	775734	778757	+	MOT22	Cre11.g467635.t1.1		775627,775970,776254,776540,777138,777612,778075,778470	775875,776062,776405,776777,777359,777662,778216,779715	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr11	779732	786326	780418	786210	-	Cre11.g467636.t1.1	Cre11.g467636.t1.1		784860,783922,781750,779732	786326,784632,783798,781606	
chr11	786411	790426	786862	790243	-	Cre11.g467637.t1.1	Cre11.g467637.t1.1		790181,789744,789435,789221,788748,788257,787883,787570,787266,786411	790426,789925,789533,789272,789055,788536,787966,787759,787375,787019	
chr11	790501	793486	790787	793460	-	Cre11.g467638.t1.1	Cre11.g467638.t1.1		793309,792925,792556,792327,792111,791889,791653,791270,790501	793486,793047,792602,792406,792150,791979,791686,791437,791097	
chr11	793533	800876	794051	800756	-	Cre11.g467639.t1.1	Cre11.g467639.t1.1		800600,799982,799636,799257,798879,798662,798302,797857,797414,796903,796402,796197,795873,795504,795091,794716,793533	800876,800362,799749,799304,798989,798707,798384,797953,797571,797027,796624,796280,795953,795608,795224,794788,794351	null-allele mutant was isolated (PMID 29743196)
chr11	800977	802082	801109	801467	+	Cre11.g467640.t1.1	Cre11.g467640.t1.1		800977	802082	
chr11	805803	812146	806588	811608	-	Cre11.g467641.t1.1	Cre11.g467641.t1.1		811533,809305,808863,808520,808127,807878,807596,807319,806999,805803	812146,811388,809130,808627,808380,807953,807732,807454,807120,806802	
chr11	812271	817566	813289	817267	-	Cre11.g467642.t1.1	Cre11.g467642.t1.1		817104,816681,816234,815965,815658,815270,814888,814635,813615,812271	817566,816803,816280,816044,815697,815394,814943,814743,813774,813418	null-allele mutant was isolated (PMID 29743196)
chr11	817677	819748	817747	819284	+	Cre11.g467643.t1.1	Cre11.g467643.t1.1		817677,818090,818434,818640,818874,819221	817834,818181,818470,818693,818954,819748	
chr11	819842	824570	820028	823923	+	CLPB1	Cre11.g467644.t1.1		819842,820348,821174,821743,822570	820154,820908,821401,822252,824570	cytosolic, orthologous to the HSP101 isoform
chr11	824581	827546	824921	825988	-	Cre11.g467645.t1.1	Cre11.g467645.t1.1		827491,827284,826503,826251,825883,825403,824581	827546,827377,826603,826296,826025,825468,825236	
chr11	827594	828826	827687	828150	-	Cre11.g467646.t1.1	Cre11.g467646.t1.1		828145,827594	828826,828084	
chr11	829391	833744	830226	833561	-	Cre11.g467647.t1.1	Cre11.g467647.t1.1		833504,833005,832559,831920,831506,831276,830887,830619,829391	833744,833227,832647,832013,831606,831321,831029,830684,830352	
chr11	833907	836885	834389	836323	+	RBL3	Cre11.g467648.t1.1		833907,834859,835471,835850	834579,835061,835609,836885	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); probably inactive,as it lacks some of the catalytic residues
chr11	837864	845933	838205	843917	+	OPR107	Cre11.g467649.t1.1		837864,838334,838506,838737,839892,840378,840808,841096,841610,842012,842459,842993	838251,838430,838563,839741,840164,840545,840933,841416,841890,842213,842755,845933	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr11	1820904	1825885	1821310	1823996	+	Cre11.g467650.t1.1	Cre11.g467650.t1.1		1820904,1821279,1821759,1822041,1822312,1822535,1822855,1823217,1823480	1821121,1821473,1821880,1822208,1822385,1822712,1823100,1823321,1825885	
chr11	1820904	1825885	1821310	1823996	+	Cre11.g467650.t2.1	Cre11.g467650.t2.1		1820904,1821279,1821759,1822041,1822312,1822535,1822861,1823217,1823480	1821121,1821473,1821880,1822208,1822385,1822712,1823100,1823321,1825885	
chr11	846336	866053	847342	865432	-	Cre11.g467651.t1.1	Cre11.g467651.t1.1		865640,865420,865134,864844,864309,863643,863044,862575,862209,861942,861525,861219,860711,860215,859957,859369,858955,858651,853440,853175,852794,852104,851684,851360,846336	866053,865531,865164,864908,864417,863761,863129,862659,862290,862027,861644,861345,860973,860484,860037,859658,859045,858728,858331,853283,852892,852592,851815,851515,851110	
chr11	866678	873343	867060	872698	-	Cre11.g467652.t1.1	Cre11.g467652.t1.1		871201,868512,867962,867602,866678	873343,870860,868047,867736,867130	
chr11	873408	879973	874208	879699	-	Cre11.g467653.t1.1	Cre11.g467653.t1.1		879592,879094,878826,878348,877670,877304,877062,876652,875564,873408	879973,879391,878837,878549,878130,877423,877133,876810,876373,875345	null-allele mutant was isolated (PMID 29743196)
chr11	880040	891773	880653	891667	-	Cre11.g467654.t1.1	Cre11.g467654.t1.1		891205,890446,890036,889556,889266,888837,888391,887907,887447,887152,886616,885793,885211,884775,883652,883278,882543,882161,881697,881133,880040	891773,890616,890115,889625,889323,889009,888504,888012,887551,887246,886711,885843,885279,884822,883704,883432,882657,882296,881832,881245,880722	
chr11	880040	891773	880653	891667	-	Cre11.g467654.t2.1	Cre11.g467654.t2.1		891205,890446,890036,889556,889266,888837,888391,887907,887447,887152,886616,885793,885211,883652,883278,882543,882161,881697,881133,881013,880040	891773,890616,890115,889625,889323,889009,888504,888012,887551,887246,886711,885843,885279,883704,883432,882657,882296,881832,881245,881042,880722	
chr11	880040	891773	880653	891667	-	Cre11.g467654.t3.1	Cre11.g467654.t3.1		891205,890446,890036,889556,889266,888837,888391,887907,887447,887152,886616,885793,885211,883652,883278,882543,882161,881697,881133,880040	891773,890616,890115,889625,889323,889009,888504,888012,887551,887246,886711,885843,885279,883704,883432,882657,882296,881832,881245,880722	
chr11	891844	896075	892972	895810	-	IMP1	Cre11.g467655.t1.1		895702,895162,894582,894140,893568,891844	896075,895285,894652,894196,893678,893029	serine protease (S26A family); type I signal peptidase; processes a subset of mitochondrion-imported proteins as they are translocated through the inner membrane into the intermembrane space
chr11	896174	904578	897309	903560	+	Cre11.g467656.t1.1	Cre11.g467656.t1.1		896174,896891,897295,898050,898433,898823,899138,899532,899776,900073,900399,900712,901007,901289,901879,902222,902501,902944,903466	896542,896915,897578,898136,898518,898922,899195,899579,899838,900153,900439,900755,901088,901356,902003,902266,902554,903014,904578	
chr11	904994	910047	905086	908383	+	Cre11.g467657.t1.1	Cre11.g467657.t1.1		904994,905701,906679	905195,906461,910047	
chr11	910752	919235	910854	918907	+	Cre11.g467658.t1.1	Cre11.g467658.t1.1		910752,913085,914077,914665,915959,916498,917768,918408	912744,913932,914373,915681,916288,917499,918214,919235	
chr11	919308	922323	919756	922242	-	Cre11.g467659.t1.1	Cre11.g467659.t1.1		922033,921880,921299,920960,920046,919308	922323,921955,921376,921040,920587,919886	
chr11	922544	935445	922752	933816	+	ELG17	Cre11.g467660.t1.1		922544,923121,923528,923750,924257,924639,924996,925275,925807,926029,926370,926860,927089,927808,928470,929045,929578,930015,930453,930729,931377,931928,932732,933016,933380,933708	922821,923250,923566,923906,924381,924727,925065,925417,925887,926075,926498,926927,927320,927921,928579,929115,929653,930190,930476,930865,931495,932112,932772,933112,933481,935445	Belongs to the family of exostosin-like glycosyltransferases
chr11	936094	937555	936528	937510	+	Cre11.g467661.t1.1	Cre11.g467661.t1.1		936094	937555	
chr11	937604	941079	937635	939746	+	Cre11.g467662.t1.1	Cre11.g467662.t1.1		937604,937861,939243,939646	937686,939044,939515,941079	
chr11	942254	969075	942804	968712	+	Cre11.g467663.t1.1	Cre11.g467663.t1.1		942254,942759,943086,943559,943898,944204,944756,945509,945840,946392,946792,949602,950885,951549,952085,952454,952765,953093,953927,954584,956442,956884,957709,958224,958507,959189,960183,960939,963259,963785,964027,964279,964844,965289,965766	942643,942867,943236,943695,944035,944553,945159,945653,945951,946544,949452,950716,951311,951912,952200,952602,952987,953791,954467,956259,956747,957527,958084,958354,958996,959805,960780,963163,963637,963856,964165,964682,964954,965474,969075	
chr11	973934	978602	974751	977979	+	Cre11.g467664.t1.1	Cre11.g467664.t1.1		973934,974687,975083,975703,976052,976300,976659,976845,977134,977440,977823	974383,974798,975546,975852,976128,976432,976710,976983,977206,977522,978602	
chr11	973934	978602	974751	977979	+	Cre11.g467664.t2.1	Cre11.g467664.t2.1		973934,974320,974687,975083,975703,976052,976300,976659,976845,977134,977440,977823	974005,974383,974798,975546,975852,976128,976432,976710,976983,977206,977522,978602	
chr11	978976	1010000	979770	1010000	-	Cre11.g467665.t1.1	Cre11.g467665.t1.1		1009953,1009575,1009311,1008084,1006583,1004946,1004480,1004199,1003816,1002918,1000700,1000223,999539,998915,998645,998049,997412,996668,994223,993741,993516,993299,992888,991169,990836,988609,988129,987928,987694,987281,986965,986640,986402,978976	1010000,1009785,1009345,1009159,1007741,1006403,1004807,1004320,1003952,1003644,1002751,1000522,1000038,999293,998775,998514,997893,997217,996504,994122,993587,993392,993210,992752,990991,990668,988510,987999,987799,987558,987066,986769,986445,986247	
chr11	1013644	1018965	1014174	1018923	-	LCI13	Cre11.g467666.t1.1		1018798,1018395,1017874,1017581,1017300,1016884,1016578,1016287,1016051,1015719,1015381,1015024,1014664,1013644	1018965,1018467,1017942,1017675,1017389,1016970,1016656,1016418,1016130,1015797,1015476,1015166,1014759,1014370	Low-CO2 inducible gene revealed by cDNA array analyses. Similar to KDEL (Lys-Asp-Glu-Leu) containing protein in many species, but LCI13 dose not contain KEDL motif, but CAP10, putative lipopolysaccharide-modifying enzyme (smart00672); regulated by CCM1; null-allele mutant was isolated (PMID 29743196)
chr11	1019012	1021005	1019504	1020905	-	Cre11.g467667.t1.1	Cre11.g467667.t1.1		1020827,1020476,1020325,1020055,1019817,1019012	1021005,1020543,1020379,1020116,1019865,1019555	
chr11	1019012	1021005	1019504	1020880	-	Cre11.g467667.t2.1	Cre11.g467667.t2.1		1020827,1020325,1020055,1019817,1019012	1021005,1020379,1020116,1019865,1019555	
chr11	1021500	1023214	1021577	1022600	+	NUOB22	Cre11.g467668.t1.1		1021500,1021852,1021997,1022172,1022540	1021694,1021893,1022078,1022224,1023214	Mitochondrial NADH-ubiquinone oxidoreductase (Complex I) B22 subunit-like protein (NUOB22, LYR protein family; human NDUFB9) [PMID: 15450959; PMID: 15710684]
chr11	1023546	1032387	1023821	1031488	+	Cre11.g467669.t1.1	Cre11.g467669.t1.1		1023546,1024115,1024481,1024942,1025352,1025704,1026301,1026763,1027146,1027494,1027949,1028255,1028491,1028702,1029056,1029557,1029807,1030245,1030571,1031022,1031326	1023896,1024291,1024603,1025053,1025470,1025865,1026390,1026872,1027223,1027619,1028008,1028345,1028559,1028756,1029203,1029626,1029881,1030392,1030674,1031114,1032387	
chr11	1036076	1042998	1036182	1042615	+	Cre11.g467670.t1.1	Cre11.g467670.t1.1		1036076,1036923,1037086,1037591,1037945,1038358,1038732,1039239,1039546,1039949,1040339,1040816,1041182,1041556,1041958,1042168,1042515	1036292,1036995,1037154,1037685,1038031,1038444,1038827,1039286,1039612,1040025,1040417,1040911,1041324,1041651,1042007,1042219,1042998	
chr11	1036076	1042998	1036182	1042615	+	Cre11.g467670.t2.1	Cre11.g467670.t2.1		1036076,1036923,1037086,1037591,1037945,1038358,1038732,1038991,1039239,1039546,1039949,1040339,1040816,1041182,1041556,1041958,1042168,1042515	1036292,1036995,1037154,1037685,1038031,1038444,1038810,1039007,1039286,1039612,1040025,1040417,1040911,1041324,1041651,1042007,1042219,1042998	
chr11	1043046	1047345	1043075	1046586	+	Cre11.g467671.t1.1	Cre11.g467671.t1.1		1043046,1043961,1044428,1044875,1045258,1045655,1046229	1043615,1044071,1044511,1044997,1045371,1045999,1047345	
chr11	1048790	1052805	1050137	1052499	-	Cre11.g467672.t1.1	Cre11.g467672.t1.1		1052416,1051429,1051116,1050838,1050485,1048790	1052805,1052345,1051253,1050899,1050648,1050249	
chr11	1053456	1063479	1053672	1061616	+	PDE24	Cre11.g467673.t1.1		1053456,1053821,1054181,1054675,1055080,1055603,1056044,1056336,1056634,1057051,1058013,1059034,1059366,1059675,1059919,1060336,1060796,1061250	1053753,1054117,1054298,1054901,1055322,1055727,1056150,1056409,1056723,1057947,1058753,1059191,1059528,1059759,1060034,1060598,1060955,1063479	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain
chr11	1064136	1070927	1065139	1068539	+	Cre11.g467674.t1.1	Cre11.g467674.t1.1		1064136,1064882,1065113,1065410,1066763,1067399	1064724,1064946,1065139,1066578,1067237,1070927	
chr11	1071346	1081387	1071460	1080076	+	Cre11.g467675.t1.1	Cre11.g467675.t1.1		1071346,1071665,1072309,1072689,1073206,1073711,1074117,1074486,1074828,1075272,1075701,1077120,1078556,1079455	1071596,1071792,1072437,1072794,1073362,1073831,1074221,1074625,1074998,1075458,1076614,1078413,1079242,1081387	
chr11	1082696	1093087	1082743	1092531	+	Cre11.g467676.t1.1	Cre11.g467676.t1.1		1082696,1087860,1089355,1089845,1091766,1092078,1092417	1087772,1089003,1089460,1091455,1091815,1092105,1093087	
chr11	1093312	1097145	1093521	1097104	-	Cre11.g467677.t1.1	Cre11.g467677.t1.1		1097080,1096643,1096227,1095624,1095236,1094779,1094349,1093312	1097145,1096795,1096267,1095726,1095386,1094901,1094438,1094060	
chr11	1093312	1097145	1093521	1096964	-	Cre11.g467677.t2.1	Cre11.g467677.t2.1		1096961,1096643,1096227,1095624,1095236,1094779,1094349,1093312	1097145,1096795,1096267,1095726,1095386,1094901,1094438,1094060	
chr11	1097316	1116834	1097514	1115220	+	COP6	Cre11.g467678.t1.1		1097316,1097903,1098166,1098559,1099026,1099881,1100617,1101183,1101742,1102091,1102504,1102795,1103169,1104564,1104900,1105441,1105717,1106273,1106761,1108675,1109144,1109534,1109885,1110397,1110652,1111000,1111732,1115039	1097705,1097993,1098295,1098631,1099195,1100119,1100765,1101243,1101861,1102183,1102572,1102896,1103234,1104656,1104986,1105526,1105789,1106422,1108188,1108878,1109310,1109693,1110011,1110446,1110756,1111179,1114736,1116834	Histidine cyclase rhodopsin 2; contains bacteriorhodopsin, Histine kinase, response regulator receiver and Guanylate/adenylate cyclase catalytic domains
chr11	1116860	1122975	1119028	1122431	-	Cre11.g467679.t1.1	Cre11.g467679.t1.1		1120614,1120200,1119823,1119442,1116860	1122975,1120316,1119926,1119588,1119198	
chr11	1123136	1130227	1123691	1129154	+	Cre11.g467680.t1.1	Cre11.g467680.t1.1		1123136,1124053,1124376,1124759,1125078,1125596,1125938,1127157	1123721,1124175,1124422,1124818,1125278,1125689,1126823,1130227	
chr11	1130369	1135815	1130925	1135609	-	Cre11.g467681.t1.1	Cre11.g467681.t1.1		1135537,1135297,1134852,1134569,1133937,1133267,1133001,1132600,1131707,1131417,1130369	1135815,1135437,1135035,1134674,1134204,1133702,1133119,1132707,1131919,1131509,1131273	
chr11	1135936	1140047	1136127	1139311	+	Cre11.g467682.t1.1	Cre11.g467682.t1.1		1135936,1136446,1136685,1136923,1137164,1137560,1137979,1138368,1138880	1136232,1136493,1136786,1136958,1137235,1137667,1138077,1138428,1140047	
chr11	1140060	1146445	1141807	1146374	-	Cre11.g467683.t1.1	Cre11.g467683.t1.1		1146232,1145788,1145299,1144899,1144435,1143910,1143572,1143083,1140060	1146445,1146015,1145510,1145090,1144601,1144061,1143660,1143368,1142868	
chr11	1146613	1152195	1148167	1151625	-	Cre11.g467684.t1.1	Cre11.g467684.t1.1		1151932,1151262,1150623,1150137,1149818,1149104,1146613	1152195,1151698,1150972,1150318,1149906,1149593,1148856	
chr11	1152260	1154565	1153551	1154310	-	Cre11.g467685.t1.1	Cre11.g467685.t1.1		1154188,1154001,1152260	1154565,1154034,1153734	
chr11	1154620	1159945	1155353	1159595	-	Cre11.g467686.t1.1	Cre11.g467686.t1.1		1159717,1159591,1159188,1158823,1158378,1157807,1157411,1156989,1156408,1154620	1159945,1159603,1159471,1158951,1158529,1157964,1157499,1157193,1156662,1156210	
chr11	1154620	1159945	1155353	1159180	-	Cre11.g467686.t2.1	Cre11.g467686.t2.1		1159144,1158823,1158378,1157807,1157411,1156989,1156408,1154620	1159945,1158951,1158529,1157964,1157499,1157193,1156662,1156210	
chr11	1160073	1165931	1160766	1165604	-	Cre11.g467687.t1.1	Cre11.g467687.t1.1		1165448,1164828,1164277,1163724,1163158,1163045,1162833,1162414,1162007,1161599,1161302,1160073	1165931,1164938,1164362,1163794,1163237,1163089,1162921,1162505,1162104,1161681,1161353,1160937	
chr11	1166032	1180933	1166189	1179811	+	Cre11.g467688.t1.1	Cre11.g467688.t1.1		1166032,1166793,1167117,1167509,1168021,1168412,1168792,1169246,1169508,1170494,1170940,1171553,1172387,1172825,1173176,1173622,1173939,1174919,1175276,1175819,1176350,1176873,1177093,1177289,1177853,1178204,1178622,1179199,1179637	1166291,1166865,1167287,1167780,1168167,1168585,1169010,1169318,1170277,1170592,1171163,1172156,1172538,1172930,1173357,1173712,1174346,1175050,1175329,1175886,1176470,1176920,1177131,1177414,1177945,1178313,1178709,1179270,1180933	
chr11	1166032	1180933	1166189	1179811	+	Cre11.g467688.t2.1	Cre11.g467688.t2.1		1166032,1166793,1167117,1167509,1168021,1168412,1168792,1169246,1169508,1170494,1170940,1171553,1172387,1172825,1173176,1173622,1173939,1174919,1175276,1175819,1176350,1176873,1177093,1177289,1177853,1178204,1178622,1179199,1179637	1166291,1166865,1167287,1167780,1168167,1168585,1169010,1169318,1170277,1170592,1171163,1172156,1172538,1172912,1173357,1173712,1174346,1175050,1175329,1175886,1176470,1176920,1177131,1177414,1177945,1178313,1178709,1179270,1180933	
chr11	1181185	1184519	1181210	1182474	+	PETC	Cre11.g467689.t1.1		1181185,1181629,1181852,1182092,1182369	1181425,1181746,1181953,1182172,1184519	Rieske [2Fe-2S] subunit of plastoquinol-plastocyanin oxido-reductase, chloroplast precursor
chr11	1184536	1188021	1185421	1187747	-	Cre11.g467690.t1.1	Cre11.g467690.t1.1		1187703,1187451,1186845,1186218,1184536	1188021,1187613,1186940,1186319,1185949	
chr11	1188182	1196693	1188338	1196531	+	Cre11.g467691.t1.1	Cre11.g467691.t1.1		1188182,1188751,1189390,1189720,1190439,1190946,1191272,1191749,1192157,1196075	1188452,1188822,1189481,1189827,1190614,1191022,1191315,1191872,1195789,1196693	
chr11	1196742	1201044	1196853	1199734	+	Cre11.g467692.t1.1	Cre11.g467692.t1.1		1196742,1197471,1198121,1198648,1198896,1199208	1197237,1197829,1198382,1198717,1199028,1201044	
chr11	1201262	1206655	1201351	1205776	+	Cre11.g467693.t1.1	Cre11.g467693.t1.1		1201262,1201891,1202771,1203157,1203596,1205269,1205776	1201735,1202490,1202840,1203289,1204531,1205300,1206655	
chr11	1201262	1204279	1201351	1204122	+	Cre11.g467693.t2.1	Cre11.g467693.t2.1		1201262,1201891,1202771,1203157,1203596	1201735,1202490,1202840,1203289,1204279	
chr11	1209416	1210751	1209445	1210112	-	Cre11.g467694.t1.1	Cre11.g467694.t1.1		1209874,1209416	1210751,1209816	
chr11	1209416	1210231	1209445	1209963	-	Cre11.g467694.t2.1	Cre11.g467694.t2.1		1209874,1209416	1210231,1209710	
chr11	1210829	1214511	1212145	1214396	-	Cre11.g467695.t1.1	Cre11.g467695.t1.1		1214179,1213894,1213461,1213209,1212743,1210829	1214511,1213977,1213656,1213304,1212918,1212624	
chr11	1215666	1219861	1216316	1219696	-	Cre11.g467696.t1.1	Cre11.g467696.t1.1		1219595,1219098,1218661,1218428,1217788,1216997,1215666	1219861,1219142,1218800,1218469,1218081,1217730,1216793	
chr11	1215666	1219861	1216316	1219696	-	Cre11.g467696.t2.1	Cre11.g467696.t2.1		1219595,1218661,1218428,1217788,1216997,1215666	1219861,1218800,1218469,1218081,1217730,1216793	
chr11	1219972	1221943	1220070	1221232	+	Cre11.g467697.t1.1	Cre11.g467697.t1.1		1219972,1220697,1220986	1220142,1220822,1221943	
chr11	1219972	1221943	1221033	1221232	+	Cre11.g467697.t2.1	Cre11.g467697.t2.1		1219972,1220697,1220986	1220137,1220822,1221943	
chr11	1220562	1221943	1221033	1221232	+	Cre11.g467697.t4.1	Cre11.g467697.t4.1		1220562,1220986	1220696,1221943	
chr11	1219972	1221943	1221033	1221232	+	Cre11.g467697.t3.1	Cre11.g467697.t3.1		1219972,1220697,1220986	1220055,1220822,1221943	
chr11	1222236	1225641	1222457	1225284	-	Cre11.g467698.t1.1	Cre11.g467698.t1.1		1223181,1222236	1225641,1222937	
chr11	1225742	1234920	1226117	1234160	+	SEC1	Cre11.g467699.t1.1		1225742,1226369,1227466,1228282,1229181,1229708,1230442,1230839,1231184,1231686,1232342,1232655,1233160,1233574,1234026	1226121,1226852,1227579,1228417,1229251,1229821,1230500,1230919,1231324,1231792,1232420,1232782,1233230,1233740,1234920	SM/Sec1-family protein, SEC1 homolog; binds SNAREs at the plasma membrane
chr11	1826115	1831677	1827000	1831639	-	UROD1	Cre11.g467700.t1.1		1831585,1830883,1830505,1830094,1829643,1829240,1828887,1828518,1828156,1827826,1827580,1826115	1831677,1831053,1830570,1830240,1829735,1829353,1828946,1828616,1828213,1827941,1827651,1827123	
chr11	1235067	1241441	1236580	1241314	-	Cre11.g467701.t1.1	Cre11.g467701.t1.1		1240996,1240558,1240198,1239894,1239304,1238889,1237905,1236890,1235067	1241441,1240734,1240254,1240030,1239451,1238925,1238590,1237561,1236673	
chr11	1241496	1245851	1241793	1245582	-	Cre11.g467702.t1.1	Cre11.g467702.t1.1		1245564,1245265,1244711,1244155,1243536,1242784,1242298,1241496	1245851,1245388,1245045,1244302,1243655,1243091,1242398,1242112	
chr11	1245952	1251004	1246130	1250773	+	Cre11.g467703.t1.1	Cre11.g467703.t1.1		1245952,1246489,1246783,1247498,1247845,1249024,1249508	1246256,1246599,1247155,1247625,1248804,1249276,1251004	
chr11	1251062	1261973	1251109	1260767	+	Cre11.g467704.t1.1	Cre11.g467704.t1.1		1251062,1252154,1253065,1254046,1254442,1254981,1255352,1256933,1257908,1258976,1259380,1259889,1260311	1251856,1252353,1253746,1254140,1254706,1255088,1255690,1257132,1258625,1259070,1259644,1259996,1261973	
chr11	1261975	1274521	1262915	1274395	-	Cre11.g467705.t1.1	Cre11.g467705.t1.1		1274200,1273730,1273271,1272979,1272691,1272287,1271878,1271571,1271043,1270790,1270056,1269595,1269206,1268929,1268603,1268128,1267869,1267060,1266522,1265813,1264860,1263157,1261975	1274521,1273978,1273426,1273098,1272795,1272420,1271926,1271633,1271132,1270873,1270229,1269827,1269284,1268952,1268682,1268279,1267924,1267167,1266743,1266064,1265571,1263293,1262915	
chr11	1274576	1282091	1274671	1281879	-	Cre11.g467706.t1.1	Cre11.g467706.t1.1		1281835,1281137,1280703,1280228,1279592,1279146,1278685,1277972,1277388,1276947,1276436,1275860,1274576	1282091,1281558,1280797,1280278,1279750,1279293,1278740,1278142,1277498,1277041,1276556,1275937,1275577	
chr11	1282624	1284201	1283395	1284005	-	ATP4	Cre11.g467707.t1.1		1282624	1284201	Mitochondrial ATP synthase, H+ transporting, delta chain. Gene in other organisms variously named ATP4, ATPD, ATP16 [PMID: 1370454; PMID: 2536736]
chr11	1284663	1288928	1285159	1288592	-	Cre11.g467708.t1.1	Cre11.g467708.t1.1		1288457,1287651,1287031,1286766,1286181,1285498,1284663	1288928,1287857,1287207,1286876,1286252,1285632,1285279	
chr11	1284663	1288928	1285159	1288592	-	Cre11.g467708.t2.1	Cre11.g467708.t2.1		1288457,1287651,1287031,1286181,1285498,1284663	1288928,1287857,1287207,1286252,1285632,1285279	
chr11	1289773	1291961	1290759	1291803	-	Cre11.g467709.t1.1	Cre11.g467709.t1.1		1291683,1291027,1289773	1291961,1291279,1290866	
chr11	1292715	1295811	1293673	1295390	-	VSP1	Cre11.g467710.t1.1		1295341,1295066,1294286,1292715	1295811,1295244,1294703,1294044	Extracellular matrix protein (cell wall protein); vegetative HRGP and tyrosine-rich wall protein; structural protein [PMID: 7689882; Genbank entry L16461]
chr11	1292715	1295811	1293673	1295180	-	VSP1	Cre11.g467710.t2.1		1295493,1295066,1294286,1292715	1295811,1295244,1294703,1294044	Extracellular matrix protein (cell wall protein); vegetative HRGP and tyrosine-rich wall protein; structural protein [PMID: 7689882; Genbank entry L16461]
chr11	1295906	1315001	1296749	1314809	-	Cre11.g467711.t1.1	Cre11.g467711.t1.1		1314683,1313558,1312538,1312232,1311404,1310923,1310227,1309757,1309434,1309065,1308657,1307980,1307604,1307035,1306546,1305891,1305572,1304833,1304174,1303698,1303370,1302885,1302479,1302107,1301558,1301114,1300751,1300486,1300056,1299773,1299568,1299182,1298714,1298369,1297905,1297432,1295906	1315001,1314201,1312620,1312353,1311564,1311091,1310361,1309875,1309510,1309162,1308776,1308087,1307702,1307111,1306834,1306023,1305653,1305220,1304305,1303847,1303546,1303001,1302539,1302156,1301653,1301230,1300862,1300562,1300185,1299831,1299600,1299297,1298876,1298587,1297970,1297547,1297092	
chr11	1295906	1315001	1296749	1314809	-	Cre11.g467711.t2.1	Cre11.g467711.t2.1		1314683,1313558,1312538,1312232,1311993,1311404,1310923,1310227,1309757,1309434,1309065,1308657,1307980,1307604,1307035,1306546,1305891,1305572,1304833,1304174,1303698,1303370,1302885,1302479,1302107,1301558,1301114,1300751,1300486,1300056,1299773,1299568,1299182,1298714,1298459,1297905,1297432,1295906	1315001,1314201,1312620,1312353,1312037,1311564,1311091,1310361,1309875,1309510,1309162,1308776,1308087,1307702,1307111,1306834,1306023,1305653,1305220,1304305,1303847,1303546,1303001,1302539,1302156,1301653,1301230,1300862,1300562,1300185,1299831,1299600,1299297,1298876,1298587,1297970,1297547,1297092	
chr11	1295906	1315001	1296749	1314809	-	Cre11.g467711.t3.1	Cre11.g467711.t3.1		1314683,1313558,1312538,1312232,1311404,1310923,1310227,1309757,1309434,1309065,1308657,1307980,1307604,1307035,1306546,1305891,1305572,1304833,1304174,1303698,1303370,1302885,1302479,1302107,1301558,1301114,1300751,1300486,1300056,1299773,1299568,1299182,1298714,1298459,1297905,1297432,1295906	1315001,1314201,1312620,1312353,1311564,1311091,1310361,1309875,1309510,1309162,1308776,1308087,1307702,1307111,1306834,1306023,1305653,1305220,1304305,1303847,1303546,1303001,1302539,1302156,1301653,1301230,1300862,1300562,1300185,1299831,1299600,1299297,1298876,1298587,1297970,1297547,1297092	
chr11	1315112	1333013	1315333	1332025	+	Cre11.g467712.t1.1	Cre11.g467712.t1.1		1315112,1315560,1316099,1316832,1317471,1318333,1318852,1319277,1319626,1320082,1320660,1321180,1321935,1322450,1322806,1323193,1323840,1324171,1324662,1325000,1325663,1326013,1326228,1326672,1326964,1327424,1327916,1328390,1328745,1329409,1329790,1330173,1330584,1331007,1331542	1315347,1315639,1316476,1317136,1318031,1318458,1318980,1319402,1319694,1320195,1320767,1321254,1322039,1322587,1322892,1323282,1323887,1324260,1324709,1325125,1325787,1326088,1326391,1326771,1327047,1327582,1328017,1328446,1328831,1329501,1329909,1330331,1330720,1331124,1333013	
chr11	1333062	1334533	1333164	1333921	+	Cre11.g467713.t1.1	Cre11.g467713.t1.1		1333062,1333309,1333532,1333688	1333219,1333398,1333606,1334533	
chr11	1334537	1337551	1335499	1337137	-	Cre11.g467714.t1.1	Cre11.g467714.t1.1		1335786,1334537	1337551,1335549	
chr11	1334537	1337551	1335499	1337137	-	Cre11.g467714.t2.1	Cre11.g467714.t2.1		1336285,1335786,1334537	1337551,1335912,1335549	
chr11	1349101	1355486	1352041	1354920	-	Cre11.g467715.t1.1	Cre11.g467715.t1.1		1354912,1353668,1353356,1349101	1355486,1354457,1353437,1353096	
chr11	1355670	1360596	1358144	1360114	-	Cre11.g467716.t1.1	Cre11.g467716.t1.1		1360490,1360100,1359353,1359079,1355670	1360596,1360179,1359896,1359163,1358914	
chr11	1360707	1364503	1361117	1364377	-	Cre11.g467717.t1.1	Cre11.g467717.t1.1		1364215,1363903,1363449,1362353,1362078,1361558,1360707	1364503,1363980,1363702,1362487,1362139,1361679,1361297	
chr11	1364607	1368046	1364693	1367189	+	HSC20A	Cre11.g467718.t1.1		1364607,1365509,1366032,1366973	1365172,1365590,1366211,1368046	Similar to Arabidopsis At5g06410, the putative homologue of yeast Jac1p and E. coli HscB, co-chaperone involved in iron-sulfur cluster assembly. Likely localized to mitochondria.
chr11	1373371	1376556	1374233	1376442	-	Cre11.g467719.t1.1	Cre11.g467719.t1.1		1375905,1375382,1375053,1373371	1376556,1375553,1375132,1374575	
chr11	1376727	1397774	1377832	1397503	+	Cre11.g467720.t1.1	Cre11.g467720.t1.1		1376727,1377795,1378950,1379377,1379918,1380344,1380846,1381187,1382705,1383066,1383426,1384872,1385664,1385922,1386474,1386802,1387204,1387791,1388410,1388763,1389203,1391071,1391472,1392459,1393192,1397164,1397503	1377236,1378732,1379219,1379675,1380158,1380722,1380995,1382415,1382924,1383282,1384701,1384949,1385708,1386032,1386629,1386987,1387311,1387931,1388514,1388951,1390844,1391177,1392311,1393028,1394594,1397343,1397774	null-allele passenger mutation was isolated (PMID 29743196)
chr11	1376727	1397774	1377832	1397164	+	Cre11.g467720.t2.1	Cre11.g467720.t2.1		1376727,1377795,1378950,1379377,1379918,1380344,1380846,1381187,1382705,1383066,1383426,1384872,1385664,1385922,1386474,1386802,1387204,1387791,1388410,1388763,1389203,1391071,1391472,1392459,1393192,1397164	1377236,1378732,1379219,1379675,1380158,1380722,1380995,1382415,1382924,1383282,1384701,1384949,1385708,1386032,1386629,1386987,1387311,1387931,1388514,1388951,1390844,1391177,1392311,1393028,1394594,1397774	null-allele passenger mutation was isolated (PMID 29743196)
chr11	1399367	1402841	1399752	1401942	+	Cre11.g467721.t1.1	Cre11.g467721.t1.1		1399367,1400328,1400516,1400802,1401208,1401480	1400042,1400370,1400614,1401022,1401316,1402841	
chr11	1403043	1404506	1403911	1404335	-	Cre11.g467722.t1.1	Cre11.g467722.t1.1		1403043	1404506	
chr11	1404867	1415769	1405162	1415303	+	KAS1	Cre11.g467723.t1.1		1404867,1405342,1405623,1406056,1406467,1406714,1407484,1408090,1408894,1409506,1409997,1410287,1410855,1411196,1414657,1415303	1405229,1405453,1405724,1406110,1406535,1406780,1407584,1408227,1408964,1409634,1410125,1410431,1410956,1412070,1415204,1415769	
chr11	1404867	1415769	1405162	1415303	+	KAS1	Cre11.g467723.t2.1		1404867,1405342,1405623,1406056,1406467,1406714,1407484,1408090,1408894,1409506,1409997,1410287,1410855,1411196,1414657,1415303	1405229,1405453,1405724,1406110,1406535,1406780,1407584,1408227,1408964,1409634,1410125,1410431,1410956,1412070,1415160,1415769	
chr11	1415771	1418026	1416485	1417779	-	Cre11.g467724.t1.1	Cre11.g467724.t1.1		1417922,1417751,1417450,1417038,1415771	1418026,1417824,1417538,1417094,1416707	
chr11	1419071	1423136	1419698	1423051	-	Cre11.g467725.t1.1	Cre11.g467725.t1.1		1422881,1422525,1421876,1421595,1421172,1420854,1420644,1420337,1419071	1423136,1422672,1422143,1421674,1421246,1420928,1420679,1420440,1420035	
chr11	1423191	1427876	1423358	1427774	-	Cre11.g467726.t1.1	Cre11.g467726.t1.1		1427716,1427541,1426951,1426583,1426111,1425884,1425477,1424744,1424409,1424086,1423191	1427876,1427620,1427374,1426652,1426387,1425964,1425545,1425215,1424458,1424222,1423692	
chr11	1427987	1432442	1428071	1432328	+	Cre11.g467727.t1.1	Cre11.g467727.t1.1		1427987,1428438,1428691,1429028,1429294,1429471,1429717,1429945,1430228,1430765,1431123,1431490	1428376,1428533,1428773,1429164,1429330,1429534,1429810,1430018,1430381,1430937,1431344,1432442	
chr11	1432543	1434738	1432596	1434034	+	Cre11.g467728.t1.1	Cre11.g467728.t1.1		1432543,1432829,1433196	1432643,1433020,1434738	
chr11	1435979	1438586	1436744	1437665	-	Cre11.g467729.t1.1	Cre11.g467729.t1.1		1438294,1438115,1437388,1435979	1438586,1438215,1438016,1437211	
chr11	1438641	1444236	1439001	1444134	-	Cre11.g467730.t1.1	Cre11.g467730.t1.1		1444007,1443828,1443201,1443094,1442807,1442472,1442109,1441829,1441423,1441292,1440826,1440375,1439597,1438641	1444236,1443928,1443746,1443147,1442905,1442546,1442261,1441927,1441568,1441299,1441111,1440616,1440266,1439001	
chr11	1441411	1444236	1441927	1444134	-	Cre11.g467730.t3.1	Cre11.g467730.t3.1		1444007,1443828,1443094,1442109,1441411	1444236,1443928,1443746,1442905,1441927	
chr11	1438641	1441356	1439001	1441074	-	Cre11.g467730.t2.1	Cre11.g467730.t2.1		1441292,1440826,1440375,1439597,1438641	1441356,1441111,1440616,1440266,1439001	
chr11	1444497	1445178	1444574	1445037	+	Cre11.g467731.t1.1	Cre11.g467731.t1.1		1444497	1445178	
chr11	1446309	1448246	1446950	1447995	-	Cre11.g467732.t1.1	Cre11.g467732.t1.1		1447718,1447256,1446309	1448246,1447541,1446987	
chr11	1448537	1450087	1448650	1449810	+	Cre11.g467733.t1.1	Cre11.g467733.t1.1		1448537,1449042	1448980,1450087	
chr11	1450137	1452090	1450295	1451656	+	Cre11.g467734.t1.1	Cre11.g467734.t1.1		1450137,1451382,1451557	1450988,1451450,1452090	
chr11	1452821	1454889	1452959	1454652	-	Cre11.g467735.t1.1	Cre11.g467735.t1.1		1454643,1454249,1454057,1453809,1453448,1452821	1454889,1454413,1454137,1453883,1453516,1453268	null-allele passenger mutation was isolated (PMID 29743196)
chr11	1455031	1458048	1455948	1457920	-	Cre11.g467736.t1.1	Cre11.g467736.t1.1		1457785,1457421,1457100,1456750,1456505,1455031	1458048,1457585,1457180,1456824,1456573,1456248	
chr11	1458766	1468886	1459043	1468722	-	Cre11.g467737.t1.1	Cre11.g467737.t1.1		1468627,1468470,1468284,1466546,1466294,1465963,1465723,1465498,1465203,1464874,1464644,1464069,1462748,1458766	1468886,1468552,1468333,1468195,1466398,1466133,1465770,1465575,1465367,1465000,1464753,1464489,1463870,1462605	
chr11	1468981	1471056	1469266	1470382	+	Cre11.g467738.t1.1	Cre11.g467738.t1.1		1468981,1469577,1469975,1470206	1469385,1469706,1470125,1471056	
chr11	1471162	1474971	1471245	1474592	+	IFT54	Cre11.g467739.t1.1		1471162,1471539,1471696,1471882,1472189,1472633,1472952,1473204,1473626,1474035,1474499	1471374,1471607,1471785,1471974,1472474,1472798,1473033,1473368,1473867,1474152,1474971	belongs to peripheral subcomplex of IFT-B particle; similar to human TRAF3IP1
chr11	1475591	1477922	1476472	1477789	-	Cre11.g467740.t1.1	Cre11.g467740.t1.1		1476872,1475591	1477922,1476614	
chr11	1478047	1487466	1478254	1487151	+	Cre11.g467741.t1.1	Cre11.g467741.t1.1		1478047,1479236,1479442,1479720,1479893,1480262,1480765,1481779	1479081,1479317,1479548,1479786,1480130,1480617,1481662,1487466	
chr11	1487647	1490828	1487723	1490115	+	Cre11.g467742.t1.1	Cre11.g467742.t1.1		1487647,1487886,1488089,1488426,1488983,1489530,1490025	1487800,1487984,1488166,1488681,1489118,1489666,1490828	
chr11	1491037	1492958	1491064	1492842	+	Cre11.g467743.t1.1	Cre11.g467743.t1.1		1491037,1491291,1491542,1491957,1492198,1492542	1491129,1491359,1491713,1492107,1492340,1492958	
chr11	1492973	1498836	1493416	1498608	-	Cre11.g467744.t1.1	Cre11.g467744.t1.1		1498589,1498149,1494949,1492973	1498836,1498389,1497946,1494736	
chr11	1499171	1508644	1499495	1507677	+	GCP3	Cre11.g467745.t1.1		1499171,1499697,1499981,1500311,1500806,1501084,1501470,1501808,1502083,1502711,1503148,1503540,1504138,1504585,1504985,1505644,1506134,1506608,1506956,1507533	1499605,1499822,1500134,1500538,1500892,1501280,1501551,1501874,1502291,1502969,1503263,1503701,1504206,1504768,1505263,1505762,1506307,1506745,1507090,1508644	Putative gamma tubulin ring complex protein 3 SPC97/DGRIP91; ts-lethal mutant block at S/M (PMID 29743196)
chr11	1508685	1513660	1508985	1513443	-	Cre11.g467746.t1.1	Cre11.g467746.t1.1		1513191,1511223,1508685	1513660,1512798,1510940	
chr11	1513869	1521100	1514900	1520887	-	Cre11.g467747.t1.1	Cre11.g467747.t1.1		1520802,1520214,1519771,1519038,1518444,1517929,1517453,1517126,1516568,1515866,1515311,1513869	1521100,1520534,1519898,1519499,1518698,1518037,1517558,1517201,1516708,1516008,1515458,1515008	
chr11	1521155	1523270	1521507	1523204	-	Cre11.g467748.t1.1	Cre11.g467748.t1.1		1523160,1522115,1521155	1523270,1522900,1521507	
chr11	1523358	1526530	1524410	1526380	-	Cre11.g467749.t1.1	Cre11.g467749.t1.1		1526332,1526152,1525913,1525636,1525343,1524955,1523358	1526530,1526256,1526004,1525744,1525507,1525122,1524611	
chr11	1831818	1836933	1832377	1836379	-	Cre11.g467750.t1.1	Cre11.g467750.t1.1		1836278,1835902,1835606,1835289,1834600,1834333,1834143,1833876,1833432,1833040,1831818	1836933,1836150,1835649,1835363,1835105,1834433,1834182,1833950,1833542,1833123,1832581	
chr11	1526651	1536986	1527112	1536384	+	Cre11.g467751.t1.1	Cre11.g467751.t1.1		1526651,1526967,1528019,1528383,1528719,1529185,1529652,1530430,1530819,1531320,1531877,1532242,1532683,1532988,1533433,1534010,1534552,1534929,1535206,1535874	1526883,1527787,1528103,1528447,1528802,1529348,1530005,1530553,1530903,1531415,1531977,1532336,1532722,1533053,1533515,1534258,1534634,1534970,1535474,1536986	null-allele passenger mutation was isolated (PMID 29743196)
chr11	1537131	1540162	1537231	1539440	+	Cre11.g467752.t1.1	Cre11.g467752.t1.1		1537131,1537559,1537954,1538489,1538931,1539395	1537327,1537714,1538077,1538625,1539032,1540162	
chr11	1540165	1542990	1540391	1542975	-	HMO2	Cre11.g467753.t1.1		1542894,1542697,1542563,1542218,1541754,1541378,1540829,1540165	1542990,1542825,1542584,1542354,1541915,1541464,1541014,1540427	Heme oxygenase; HMOX; HO; Catalyzes the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide; Involved in the synthesis of phytochromobilin, the pigment cofactor of phytochrome, in plants [PMID: 16115609]
chr11	1543043	1548050	1543869	1547788	-	Cre11.g467754.t1.1	Cre11.g467754.t1.1		1547615,1547263,1546617,1546042,1545168,1544278,1543043	1548050,1547350,1546768,1546099,1545287,1544468,1543948	
chr11	1548169	1552322	1548300	1551608	+	Cre11.g467755.t1.1	Cre11.g467755.t1.1		1548169,1548717,1549172,1549671,1550006,1550260,1550570,1551020,1551506	1548360,1548872,1549261,1549753,1550102,1550421,1550616,1551155,1552322	Similar to the NAD-binding domain of Tic62-3
chr11	1552481	1561531	1552719	1560167	+	MMP5	Cre11.g467756.t1.1		1552481,1553147,1553747,1554065,1554622,1555026,1555542,1555913,1557073,1557475,1557757,1558088,1558369,1558571,1558910,1559094,1559665,1560140	1552774,1553430,1553798,1554168,1554675,1555184,1555585,1555982,1557120,1557544,1557806,1558218,1558433,1558623,1558925,1559192,1559987,1561531	Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein
chr11	1561875	1574930	1562222	1574842	-	Cre11.g467757.t1.1	Cre11.g467757.t1.1		1574714,1574539,1574255,1573440,1572727,1572319,1571109,1570583,1570092,1569261,1568571,1567084,1561875	1574930,1574588,1574363,1574042,1573011,1572463,1571951,1570726,1570301,1569806,1569022,1568204,1566418	
chr11	1566757	1574930	1567072	1574842	-	Cre11.g467757.t2.1	Cre11.g467757.t2.1		1574714,1574539,1574255,1573440,1572727,1572319,1571109,1570583,1570092,1569261,1568571,1566757	1574930,1574588,1574363,1574042,1573011,1572463,1571951,1570726,1570301,1569806,1569022,1568204	
chr11	1577945	1583400	1578826	1583364	-	Cre11.g467758.t1.1	Cre11.g467758.t1.1		1583124,1582319,1581939,1580729,1580465,1579858,1579360,1577945	1583400,1582410,1582044,1581720,1580558,1580114,1579470,1578953	
chr11	1583501	1587391	1583528	1586412	+	Cre11.g467759.t1.1	Cre11.g467759.t1.1		1583501,1584464,1584918,1585344,1585849,1586220	1583723,1584523,1585049,1585557,1585946,1587391	
chr11	1587722	1594170	1587837	1593147	+	Cre11.g467760.t1.1	Cre11.g467760.t1.1		1587722,1588081,1588411,1592418,1593031	1587867,1588152,1588509,1592550,1594170	
chr11	1592021	1594170	1592149	1593147	+	Cre11.g467760.t2.1	Cre11.g467760.t2.1		1592021,1592418,1593031	1592173,1592550,1594170	
chr11	1594285	1600460	1596950	1599751	-	Cre11.g467761.t1.1	Cre11.g467761.t1.1		1599974,1599600,1594285	1600460,1599868,1599406	
chr11	1600631	1604502	1601343	1604467	+	Cre11.g467762.t1.1	Cre11.g467762.t1.1		1600631,1601267	1600891,1604502	
chr11	1604561	1607742	1604631	1604830	+	Cre11.g467763.t1.1	Cre11.g467763.t1.1		1604561	1607742	
chr11	1607991	1608936	1608025	1608362	+	Cre11.g467764.t1.1	Cre11.g467764.t1.1		1607991	1608936	
chr11	1609807	1617440	1611659	1616634	-	Cre11.g467765.t1.1	Cre11.g467765.t1.1		1617101,1616957,1616057,1612463,1609807	1617440,1616969,1616656,1615876,1612303	
chr11	1617795	1627330	1619238	1627051	-	Cre11.g467766.t1.1	Cre11.g467766.t1.1		1627030,1626574,1626105,1625655,1625249,1624898,1624714,1624122,1623784,1623285,1623008,1622490,1622241,1621815,1621472,1620879,1620621,1620063,1619712,1617795	1627330,1626726,1626170,1625700,1625317,1624947,1624782,1624154,1623883,1623373,1623115,1622557,1622292,1621880,1621552,1620989,1620689,1620102,1619779,1619397	
chr11	1627764	1630970	1628538	1630812	-	NUO13	Cre11.g467767.t1.1		1630699,1630162,1628985,1627764	1630970,1630256,1629121,1628664	NADH:ubiquinone oxidoreductase (Complex I) subunit, homolog to bovine B17.2. gi|34334022|gb|AAQ64638.1| [PMID: 15710684; PMID: 15450959]
chr11	1631071	1636302	1631432	1635872	+	Cre11.g467768.t1.1	Cre11.g467768.t1.1		1631071,1631820,1632077,1632550,1633901,1634185,1634855,1635329	1631538,1631887,1632283,1633426,1633989,1634586,1634944,1636302	
chr11	1636358	1638606	1636474	1637906	+	Cre11.g467769.t1.1	Cre11.g467769.t1.1		1636358,1636687,1636956,1637419,1637819	1636566,1636795,1637049,1637546,1638606	
chr11	1638740	1643130	1639160	1642362	-	PGK1	Cre11.g467770.t1.1		1642179,1642053,1641686,1641182,1640777,1640453,1640072,1639731,1638740	1643130,1642095,1641834,1641400,1640905,1640580,1640180,1639880,1639439	[EC:2.7.2.3]; catalyses the conversion of 1,3-diphosphoglycerate to 3-phosphoglycerate (the second step of the second phase in glycolysis) forming one molecule of ATP; catalyses also the reverse reaction
chr11	1645574	1648800	1648464	1648729	-	Cre11.g467771.t1.1	Cre11.g467771.t1.1		1645574	1648800	
chr11	1648855	1654090	1650239	1653207	-	CYCD1	Cre11.g467772.t1.1		1653567,1653171,1652778,1652132,1651768,1651405,1650967,1648855	1654090,1653252,1653079,1652465,1651839,1651473,1651254,1650692	D-type cyclin homolog; contains LXCXE motif.  Putative function in G1/S
chr11	1654328	1658700	1655201	1658654	-	Cre11.g467773.t1.1	Cre11.g467773.t1.1		1658567,1658102,1656920,1656113,1655510,1654328	1658700,1658182,1656965,1656291,1655596,1655315	
chr11	1658801	1666689	1658871	1666497	+	Cre11.g467774.t1.1	Cre11.g467774.t1.1		1658801,1659460,1659876,1660541,1661205,1661647,1662797,1663321,1663585,1663886,1664429,1664907	1658988,1659521,1659956,1660758,1661334,1661725,1662871,1663377,1663634,1663988,1664566,1666689	
chr11	1666695	1669400	1667192	1669355	-	Cre11.g467775.t1.1	Cre11.g467775.t1.1		1669307,1668637,1668197,1667670,1666695	1669400,1669155,1668360,1668000,1667258	
chr11	1669615	1672540	1670273	1672209	-	Cre11.g467776.t1.1	Cre11.g467776.t1.1		1671654,1671105,1670570,1669615	1672540,1671268,1670921,1670339	
chr11	1672645	1674990	1673316	1674883	-	Cre11.g467777.t1.1	Cre11.g467777.t1.1		1674757,1674343,1673823,1673660,1672645	1674990,1674506,1674161,1673732,1673382	
chr11	1675308	1680853	1676124	1680767	-	Cre11.g467778.t1.1	Cre11.g467778.t1.1		1680614,1679685,1679356,1678887,1678239,1677653,1677183,1676665,1675308	1680853,1679764,1679431,1678949,1678289,1677712,1677275,1676778,1676229	
chr11	1680981	1692262	1681148	1691832	+	Cre11.g467779.t1.1	Cre11.g467779.t1.1		1680981,1681433,1681938,1682435,1682688,1683299,1683934,1684559,1684980,1685588,1685940,1686424,1686970,1687730,1688188,1688591,1690042,1690550,1691230,1691724	1681250,1681530,1681993,1682583,1682735,1683561,1684051,1684662,1685157,1685674,1686038,1686681,1687443,1687957,1688354,1689448,1690145,1690601,1691422,1692262	
chr11	1692724	1694589	1692830	1694030	+	Cre11.g467780.t1.1	Cre11.g467780.t1.1		1692724,1693346,1693737,1693931	1693018,1693479,1693777,1694589	
chr11	1694605	1703830	1695548	1703665	-	FAP151	Cre11.g467781.t1.1		1703596,1702791,1702522,1702002,1701569,1701071,1699618,1699152,1698815,1698343,1698000,1697716,1697424,1696984,1696699,1696362,1695945,1694605	1703830,1702870,1702621,1702100,1701664,1701145,1699738,1699315,1698881,1698456,1698106,1697814,1697484,1697087,1696762,1696501,1696115,1695635	Similar to  Non-Transporter ABC Protein
chr11	1704004	1710295	1704268	1710077	+	Cre11.g467782.t1.1	Cre11.g467782.t1.1		1704004,1704409,1707831,1708185,1709274	1704328,1707469,1707979,1709004,1710295	
chr11	1713374	1715670	1714168	1714765	+	Cre11.g467783.t1.1	Cre11.g467783.t1.1		1713374,1714741	1714489,1715670	
chr11	1719484	1723305	1719826	1722627	+	Cre11.g467784.t1.1	Cre11.g467784.t1.1		1719484,1720128,1720513,1721223,1721992,1722574	1719889,1720147,1720660,1721451,1722057,1723305	
chr11	1723312	1729420	1723892	1729092	-	Cre11.g467785.t1.1	Cre11.g467785.t1.1		1729067,1728728,1728236,1727768,1727121,1726796,1725981,1725552,1725279,1724943,1724561,1723312	1729420,1728822,1728286,1727908,1727268,1726851,1726148,1725662,1725373,1725057,1724740,1724363	
chr11	1729488	1733313	1729580	1733174	-	Cre11.g467786.t1.1	Cre11.g467786.t1.1		1732374,1731516,1729488	1733313,1732005,1731254	
chr11	1736848	1740133	1737489	1739977	-	Cre11.g467787.t1.1	Cre11.g467787.t1.1		1739968,1739418,1738983,1738503,1738051,1736848	1740133,1739600,1739219,1738798,1738201,1737714	
chr11	1740200	1741313	1740411	1740836	-	Cre11.g467788.t1.1	Cre11.g467788.t1.1		1741231,1741012,1740732,1740200	1741313,1741077,1740852,1740553	
chr11	1742743	1744993	1743104	1744481	-	Cre11.g467789.t1.1	Cre11.g467789.t1.1		1744770,1744624,1744284,1743946,1743369,1742743	1744993,1744656,1744501,1744087,1743746,1743104	
chr11	1742743	1745903	1743104	1744481	-	Cre11.g467789.t2.1	Cre11.g467789.t2.1		1745821,1745429,1744770,1744624,1744284,1743946,1743369,1742743	1745903,1745641,1745087,1744656,1744501,1744087,1743746,1743104	
chr11	1745234	1745755	1745348	1745694	+	Cre11.g467790.t1.1	Cre11.g467790.t1.1		1745234	1745755	
chr11	1745804	1748105	1746204	1747645	+	Cre11.g467791.t1.1	Cre11.g467791.t1.1		1745804,1746192,1746736,1747608	1746071,1746351,1747286,1748105	
chr11	1748116	1751183	1748565	1751124	-	Cre11.g467792.t1.1	Cre11.g467792.t1.1		1750978,1749618,1749090,1748116	1751183,1749708,1749215,1748802	
chr11	1751268	1753993	1752150	1753841	-	Cre11.g467793.t1.1	Cre11.g467793.t1.1		1753710,1753212,1752746,1751268	1753993,1753302,1752862,1752441	
chr11	1754138	1757253	1754788	1757220	-	Cre11.g467794.t1.1	Cre11.g467794.t1.1		1756933,1756293,1755597,1754138	1757253,1756383,1755713,1755322	
chr11	1757544	1772495	1757736	1771664	+	Cre11.g467795.t1.1	Cre11.g467795.t1.1		1757544,1757952,1758315,1758729,1759062,1759565,1759898,1760717,1761590,1761987,1762273,1762771,1763157,1763560,1764024,1764425,1764945,1765483,1765858,1766402,1766870,1767140,1767684,1768191,1768445,1768916,1769273,1769885,1770594,1771084,1771544	1757769,1758054,1758367,1758793,1759108,1759629,1760053,1760755,1761649,1762158,1762364,1762880,1763235,1763635,1764167,1764483,1765153,1765543,1766037,1766503,1766935,1767412,1767810,1768266,1768532,1769010,1769428,1770029,1770736,1771258,1772495	
chr11	1819384	1820845	1819611	1820169	+	Cre11.g467796.t1.1	Cre11.g467796.t1.1		1819384,1819966	1819855,1820845	
chr11	1836988	1840243	1837493	1839897	-	Cre11.g467800.t1.1	Cre11.g467800.t1.1		1839546,1839253,1838694,1836988	1840243,1839318,1838843,1838537	
chr11	1840401	1846172	1841007	1843781	+	PGA6	Cre11.g467850.t1.1		1840401,1841007,1841325,1841730,1842102,1842556,1843059,1843596	1840679,1841082,1841377,1841776,1842201,1842651,1843129,1846172	
chr11	1840401	1846172	1841007	1843781	+	PGA6	Cre11.g467850.t2.1		1840401,1841007,1841325,1841730,1842105,1842556,1843059,1843596	1840679,1841082,1841377,1841776,1842201,1842651,1843129,1846172	
chr11	1846468	1850855	1846496	1850027	+	Cre11.g467900.t1.2	Cre11.g467900.t1.2		1846468,1847014,1847349,1847911,1848278,1848610,1849295,1849694,1849988	1846793,1847060,1847419,1847963,1848369,1848673,1849345,1849819,1850855	
chr11	1850858	1860743	1851297	1860392	-	FAP383	Cre11.g467950.t1.1		1860522,1860347,1859662,1858864,1858315,1857950,1857472,1853827,1853271,1852373,1850858	1860743,1860403,1859835,1859465,1858366,1858033,1857592,1853879,1853450,1852468,1852104	May contain additional coding sequence in intronic N-island PMID: 27175017; Found in Cr and Volvox but not strongly conserved elsewhere
chr11	1860798	1866363	1861721	1866266	-	Cre11.g468000.t1.2	Cre11.g468000.t1.2		1866166,1865763,1865448,1865073,1864420,1863404,1863013,1862671,1860798	1866363,1865858,1865491,1865137,1864499,1863515,1863124,1862805,1862288	
chr11	1866544	1871276	1866721	1870611	+	VIPP2	Cre11.g468050.t1.2		1866544,1866852,1867543,1867815,1868233,1868792,1869195,1869604,1869905,1870449	1866734,1867285,1867599,1867874,1868341,1868844,1869327,1869641,1870030,1871276	Chloroplast protein that appears to be required for thylakoid biogenesis; homolog to VIPP1
chr11	1871838	1873033	1872622	1872857	-	Cre11.g468063.t1.1	Cre11.g468063.t1.1		1871838	1873033	
chr11	1873154	1877505	1873513	1876765	+	Cre11.g468075.t1.1	Cre11.g468075.t1.1		1873154,1873405,1873857,1874945,1875442,1875669,1875898,1876648	1873332,1873537,1874476,1875296,1875522,1875821,1876479,1877505	
chr11	1873154	1877505	1873513	1876648	+	Cre11.g468075.t2.1	Cre11.g468075.t2.1		1873154,1873405,1873857,1874945,1875442,1875669,1875898,1876648	1873332,1873537,1874476,1875296,1875522,1875675,1876479,1877505	
chr11	1888548	1901563	1891124	1901293	-	PDE30	Cre11.g468100.t1.2		1901215,1900730,1899815,1899427,1898878,1896051,1895332,1894847,1894439,1894174,1893808,1893497,1893026,1892478,1892140,1891630,1888548	1901563,1900858,1900014,1899518,1899044,1898435,1895489,1894922,1894474,1894221,1893892,1893609,1893318,1892706,1892198,1891851,1891371	Metal-dependent phosphohydrolase
chr11	1901618	1907283	1903019	1906818	-	Cre11.g468150.t1.1	Cre11.g468150.t1.1		1906206,1903832,1901618	1907283,1905988,1903559	
chr11	1910684	1914483	1910782	1912549	+	Cre11.g468200.t1.1	Cre11.g468200.t1.1		1910684,1911052,1911257,1911930,1912503	1910896,1911086,1911559,1912184,1914483	
chr11	1914594	1919615	1914704	1919194	+	Cre11.g468250.t1.1	Cre11.g468250.t1.1		1914594,1915359,1915711,1916183,1916571,1917194,1917532,1918377,1919050	1914888,1915446,1915779,1916216,1916717,1917306,1918184,1918477,1919615	
chr11	1920764	1922353	1921460	1922040	-	SAR1	Cre11.g468300.t1.2		1920764	1922353	Expressed Protein. Sar-type GTPase, involved in COP-II coat formation at the endoplasmic reticulum
chr11	1922518	1930543	1923845	1930411	-	Cre11.g468350.t1.2	Cre11.g468350.t1.2		1930115,1929745,1929231,1928925,1928567,1928090,1927384,1927007,1926382,1925770,1925372,1924844,1924469,1924088,1922518	1930543,1929841,1929298,1929012,1928636,1928161,1927613,1927135,1926576,1925979,1925455,1924924,1924546,1924147,1923929	
chr11	1930674	1941835	1931134	1941675	+	Cre11.g468353.t1.1	Cre11.g468353.t1.1		1930674,1931976,1932954,1933808,1934262,1934775,1935142,1935917,1936252,1936800,1937025,1937454,1939215,1939526,1940331,1940949	1931672,1932013,1933036,1933969,1934425,1934847,1935289,1935990,1936360,1936864,1937109,1939004,1939295,1939597,1940402,1941835	
chr11	1942698	1965503	1943950	1965296	-	Cre11.g468356.t1.1	Cre11.g468356.t1.1		1965227,1965106,1964899,1964674,1964188,1963768,1963315,1962780,1962409,1962034,1961569,1960933,1960435,1960074,1959549,1958782,1958445,1957873,1957550,1957105,1956103,1955676,1955534,1955160,1954739,1954282,1953676,1953199,1952678,1952144,1951798,1951377,1950542,1950135,1949609,1949222,1948961,1948753,1948380,1946058,1945431,1945168,1942698	1965503,1965144,1964994,1964742,1964334,1963830,1963397,1962917,1962466,1962117,1961685,1961259,1960494,1960163,1959680,1959029,1958552,1958200,1957683,1957201,1956260,1955814,1955572,1955285,1954852,1954365,1953771,1953399,1952803,1952350,1951884,1951557,1950710,1950237,1949668,1949377,1949055,1948813,1948521,1948138,1945646,1945255,1944852	
chr11	1942698	1965503	1943950	1965296	-	Cre11.g468356.t2.1	Cre11.g468356.t2.1		1965227,1965106,1964899,1964674,1964188,1963768,1963315,1962780,1962409,1962034,1961569,1960933,1960435,1960074,1959549,1958782,1958445,1957873,1957550,1957105,1956103,1955676,1955160,1954739,1954282,1953676,1953199,1952678,1952144,1951798,1951377,1950542,1950135,1949609,1949222,1948961,1948753,1948380,1946058,1945431,1945168,1942698	1965503,1965144,1964994,1964742,1964334,1963830,1963397,1962917,1962466,1962117,1961685,1961259,1960494,1960163,1959680,1959029,1958552,1958200,1957683,1957201,1956260,1955814,1955285,1954852,1954365,1953771,1953399,1952803,1952350,1951884,1951557,1950710,1950237,1949668,1949377,1949055,1948813,1948521,1948138,1945646,1945255,1944852	
chr11	1966744	1970333	1967399	1970134	-	GAS31	Cre11.g468359.t1.1		1970064,1969793,1969145,1968769,1966744	1970333,1969977,1969599,1968923,1968649	
chr11	1974304	1979395	1975040	1977415	+	Cre11.g468362.t1.1	Cre11.g468362.t1.1		1974304,1974941,1975353,1976272	1974840,1975191,1975822,1979395	
chr11	1979418	1988273	1980512	1987212	-	Cre11.g468365.t1.1	Cre11.g468365.t1.1		1988045,1987795,1986400,1983268,1982762,1982530,1979418	1988273,1987857,1987325,1984813,1982983,1982568,1981892	
chr11	1979418	1988273	1980512	1987212	-	Cre11.g468365.t2.1	Cre11.g468365.t2.1		1988045,1987795,1986400,1984602,1983268,1982762,1982530,1979418	1988273,1987857,1987325,1984813,1984532,1982983,1982568,1981892	
chr11	1988328	1990463	1988466	1990269	-	Cre11.g468368.t1.1	Cre11.g468368.t1.1		1990071,1988696,1988328	1990463,1989769,1988487	
chr11	1990651	2004883	1991343	2004580	-	Cre11.g468371.t1.1	Cre11.g468371.t1.1		2003875,2000346,1999107,1998543,1998369,1997975,1997400,1990651	2004883,2003336,2000210,1998794,1998407,1998100,1997579,1997088	
chr11	2005119	2008345	2005852	2008289	-	Cre11.g468374.t1.1	Cre11.g468374.t1.1		2006735,2006433,2005119	2008345,2006546,2006233	
chr11	2009366	2013731	2009475	2012936	+	Cre11.g468377.t1.1	Cre11.g468377.t1.1		2009366,2010412,2010847,2011607,2012201,2012849	2009919,2010470,2010977,2011693,2012343,2013731	
chr11	2014180	2021705	2015255	2021674	-	Cre11.g468380.t1.1	Cre11.g468380.t1.1		2018287,2017537,2017186,2016014,2014180	2021705,2017839,2017287,2016880,2015606	
chr11	2021760	2029705	2023177	2029651	-	Cre11.g468383.t1.1	Cre11.g468383.t1.1		2029429,2028757,2028359,2027923,2027526,2026939,2026429,2025407,2024751,2021760	2029705,2028778,2028430,2028007,2027634,2027020,2026502,2025914,2025114,2024399	null-allele mutant was isolated (PMID 29743196)
chr11	2030831	2036295	2031721	2036091	-	Cre11.g468400.t1.1	Cre11.g468400.t1.1		2035809,2035478,2034915,2034626,2034314,2033976,2033728,2033250,2032565,2032257,2030831	2036295,2035572,2035248,2034700,2034403,2034077,2033790,2033363,2032756,2032295,2031895	
chr11	2036432	2038737	2036491	2038266	+	DLE2	Cre11.g468450.t1.2		2036432,2036716,2036984,2037541,2037820,2038007,2038238	2036598,2036752,2037034,2037708,2037862,2038082,2038737	Centrin present in monomeric inner arm dyneins b, e, and g; component of flagellar inner arm dyneins and basal body/centriole-associated structures; contains two Ca-binding EF-hand domain pairs; the vfl2 mutation in this gene produces cells with variable numbers of flagella
chr11	2038740	2046102	2039055	2045925	-	MPA8	Cre11.g468500.t1.1		2045562,2045243,2044847,2044520,2044138,2043810,2043331,2042860,2042293,2041915,2041393,2041068,2040665,2040390,2039937,2039643,2038740	2046102,2045274,2044957,2044616,2044193,2043858,2043519,2042952,2042397,2042075,2041580,2041177,2040753,2040459,2040116,2039678,2039202	Metallophosphoesterase/metallo-dependent phosphatase with purpe acid phosphatase domain
chr11	2046226	2047451	2046317	2047037	+	ATPVG	Cre11.g468550.t1.2		2046226,2046486,2046672,2046992	2046405,2046586,2046770,2047451	Vacuolar H+-ATPase V1 sector, subunit G; V-ATPase G; vacuolar proton pump G subunit; found in the flagellar proteome [PMID: 15998802]
chr11	2047506	2053373	2047726	2052006	+	Cre11.g468600.t1.2	Cre11.g468600.t1.2		2047506,2049290,2049769,2050112,2050537,2050891,2051310,2051903	2048745,2049445,2049913,2050204,2050668,2051059,2051457,2053373	
chr11	2053656	2056997	2053724	2056119	+	Cre11.g468650.t1.2	Cre11.g468650.t1.2		2053656,2055427,2055732	2055281,2055531,2056997	
chr11	2057590	2064425	2058083	2064334	-	CPLD65	Cre11.g468700.t1.2		2064278,2063855,2063611,2063041,2062664,2062049,2061709,2061294,2061033,2060686,2060244,2059747,2059485,2059236,2058856,2058503,2057590	2064425,2064123,2063671,2063143,2062734,2062097,2061774,2061329,2061118,2060766,2060379,2059800,2059547,2059283,2058960,2058546,2058222	
chr11	2064526	2067867	2064639	2067352	+	CPLD48	Cre11.g468750.t1.2		2064526,2065134,2065599,2066311,2066824,2067313	2064785,2065328,2065677,2066403,2066949,2067867	
chr11	2067870	2070655	2068391	2070117	-	PHC71	Cre11.g468800.t1.2		2070073,2069209,2067870	2070655,2069914,2069051	
chr11	2070810	2073203	2071858	2072950	-	FAP152	Cre11.g468850.t1.2		2072911,2072552,2072220,2070810	2073203,2072717,2072347,2071978	Flagellar Associated Protein, found in the flagellar proteome
chr11	2073316	2078387	2073463	2078068	+	FAP404	Cre11.g468900.t1.2		2073316,2073747,2074125,2074428,2075021,2075611,2076143,2076475,2076860,2077193,2077506,2077951	2073591,2073899,2074199,2074653,2075365,2075903,2076236,2076603,2076991,2077306,2077664,2078387	Found in Cr and Volvox but not strongly conserved elsewhere
chr11	2078398	2079465	2078994	2079407	-	QCR9	Cre11.g468950.t1.2		2079374,2079238,2079126,2078398	2079465,2079303,2079173,2079030	Subunit 9 of mitochondrial Complex III (ubiquinol:cytochrome c oxidoreductase) [PMID: 15710684]; homolog of human QCR10, bovine subunit X and yeast QCR9
chr11	2079566	2083011	2079666	2082045	+	FAP107	Cre11.g469000.t1.2		2079566,2080356,2080743,2081204,2081525,2081865	2079740,2080497,2080863,2081286,2081641,2083011	Flagellar Associated Protein, found in the flagellar proteome
chr11	2083020	2089285	2083627	2089260	-	Cre11.g469033.t1.1	Cre11.g469033.t1.1		2089024,2087857,2086135,2085306,2083020	2089285,2088864,2086686,2086034,2083627	
chr11	2083020	2089285	2083627	2089260	-	Cre11.g469033.t2.1	Cre11.g469033.t2.1		2089024,2087857,2086135,2085306,2083020	2089285,2088864,2086867,2086034,2083627	
chr11	2089340	2092865	2090380	2092841	-	Cre11.g469100.t1.2	Cre11.g469100.t1.2		2092745,2092593,2092184,2091914,2091419,2091084,2090660,2089340	2092865,2092649,2092255,2091981,2091509,2091142,2090737,2090450	
chr11	2092920	2097405	2093719	2096971	-	Cre11.g469150.t1.2	Cre11.g469150.t1.2		2096782,2096357,2095578,2094964,2094328,2092920	2097405,2096494,2095652,2095036,2094572,2093869	null-allele passenger mutation was isolated (PMID 29743196)
chr11	2097956	2102450	2098198	2101885	+	Cre11.g469187.t1.1	Cre11.g469187.t1.1		2097956,2098797,2099187,2099676,2100111,2100284,2100571	2098532,2098888,2099294,2099781,2100182,2100354,2102450	
chr11	2103166	2106037	2103230	2105701	+	Cre11.g469224.t1.1	Cre11.g469224.t1.1		2103166,2104043,2104398,2104698,2104977,2105207,2105605	2103672,2104128,2104457,2104763,2105066,2105341,2106037	
chr11	2103994	2106037	2103994	2105701	+	Cre11.g469224.t2.1	Cre11.g469224.t2.1		2103994,2104398,2104698,2104977,2105207,2105605	2104128,2104457,2104763,2105066,2105341,2106037	
chr11	2106041	2112715	2107584	2111755	-	Cre11.g469300.t1.1	Cre11.g469300.t1.1		2112431,2111966,2106041	2112715,2112077,2111788	
chr11	2113436	2119317	2113519	2118812	+	TTL12	Cre11.g469350.t1.1		2113436,2114003,2114808,2115119,2115673,2116817,2117582	2113744,2114197,2114848,2115251,2116561,2117388,2119317	
chr11	2119426	2124167	2119459	2123641	+	Cre11.g469375.t1.1	Cre11.g469375.t1.1		2119426,2120739,2123113	2120497,2122931,2124167	
chr11	2126432	2129395	2128539	2129248	-	HKR4	Cre11.g469400.t1.2		2126432	2129395	contains only the signal receiver domain
chr11	2129556	2134327	2129757	2133827	+	CGL124	Cre11.g469450.t1.1		2129556,2129959,2130376,2130742,2131199,2131623,2132071,2132528,2133036,2133665	2129856,2130069,2130440,2130815,2131307,2131725,2132202,2132661,2133156,2134327	
chr11	2134386	2155326	2134870	2154027	+	Cre11.g469500.t1.1	Cre11.g469500.t1.1		2134386,2135671,2135868,2136037,2136433,2136632,2136949,2137376,2137585,2137841,2138276,2138629,2138893,2139273,2139583,2139917,2140225,2140668,2140951,2141200,2141491,2141914,2142322,2142815,2143352,2143706,2144127,2144741,2145068,2145648,2146012,2146771,2147218,2147636,2148004,2148301,2148725,2149183,2149609,2149968,2150384,2150898,2151505,2151799,2152143,2152662,2153076,2153536,2153919	2134980,2135693,2135903,2136128,2136470,2136728,2137113,2137448,2137616,2137914,2138447,2138763,2139048,2139374,2139729,2140011,2140374,2140773,2141007,2141298,2141661,2142014,2142415,2142992,2143590,2143858,2144373,2144889,2145339,2145858,2146612,2147033,2147458,2147712,2148137,2148332,2148883,2149298,2149709,2150089,2150550,2151338,2151594,2151929,2152314,2152832,2153294,2153631,2155326	
chr11	2134386	2155326	2134870	2154027	+	Cre11.g469500.t2.1	Cre11.g469500.t2.1		2134386,2135671,2135868,2136037,2136433,2136632,2136949,2137376,2137585,2137841,2138276,2138629,2138893,2139273,2139583,2139917,2140225,2140668,2140951,2141200,2141491,2141914,2142322,2142815,2143352,2143706,2144127,2144741,2145068,2145648,2146012,2146771,2147218,2147636,2148004,2148301,2148725,2149183,2149609,2149968,2150384,2150898,2151505,2151799,2152143,2152695,2153076,2153536,2153919	2134980,2135693,2135903,2136128,2136470,2136728,2137113,2137448,2137616,2137914,2138447,2138763,2139048,2139374,2139729,2140011,2140374,2140773,2141007,2141298,2141661,2142014,2142415,2142992,2143590,2143858,2144373,2144889,2145339,2145858,2146612,2147033,2147458,2147712,2148137,2148332,2148883,2149298,2149709,2150089,2150550,2151338,2151594,2151929,2152314,2152832,2153294,2153631,2155326	
chr11	2156043	2156929	2156086	2156381	+	Cre11.g469550.t1.2	Cre11.g469550.t1.2		2156043	2156929	
chr11	2157203	2165526	2157319	2164990	+	HDA9	Cre11.g469600.t1.2		2157203,2157687,2158122,2158369,2159107,2159418,2159830,2160266,2160682,2161064,2161546,2161971,2162529,2163040,2163323,2163827,2164269	2157491,2157781,2158172,2158494,2159254,2159473,2159997,2160376,2160776,2161178,2161638,2162201,2162621,2163141,2163421,2164002,2165526	Histone deacetylase.  ChromoDB HDA3411
chr11	2165537	2171102	2166249	2170655	-	Cre11.g469650.t1.1	Cre11.g469650.t1.1		2170561,2170283,2169766,2169513,2168911,2168695,2168471,2168195,2168038,2167886,2167266,2166747,2165537	2171102,2170418,2170012,2169604,2169367,2168757,2168538,2168203,2168098,2167940,2167624,2166908,2166462	
chr11	2165537	2171102	2166249	2170655	-	Cre11.g469650.t2.1	Cre11.g469650.t2.1		2170561,2170283,2169766,2169513,2168911,2168695,2168471,2168038,2167886,2167266,2166747,2165537	2171102,2170418,2170012,2169604,2169367,2168757,2168538,2168098,2167940,2167624,2166908,2166462	
chr11	2165537	2171102	2166249	2170655	-	Cre11.g469650.t3.1	Cre11.g469650.t3.1		2170561,2170283,2169766,2169513,2168911,2168695,2168471,2168038,2167843,2167266,2166747,2165537	2171102,2170418,2170012,2169604,2169367,2168757,2168538,2168098,2167849,2167624,2166908,2166462	
chr11	2173247	2179972	2173477	2179705	-	Cre11.g469750.t1.1	Cre11.g469750.t1.1		2179611,2179331,2178820,2178553,2177874,2177654,2177443,2175333,2175170,2174630,2173960,2173247	2179972,2179466,2179063,2178644,2178333,2177716,2177519,2175393,2175224,2174985,2174121,2173687	
chr11	2173247	2179972	2173477	2179705	-	Cre11.g469750.t2.1	Cre11.g469750.t2.1		2179611,2179331,2178820,2178553,2177874,2177654,2177443,2175333,2175170,2174630,2173960,2173247	2179972,2179466,2179063,2178644,2178333,2177716,2177519,2175393,2175224,2174976,2174121,2173687	
chr11	2180189	2185692	2180624	2185388	-	Cre11.g469800.t1.2	Cre11.g469800.t1.2		2185291,2185006,2184566,2184262,2183594,2183212,2182894,2182653,2182413,2181906,2181281,2180189	2185692,2185141,2184806,2184353,2184035,2183274,2182964,2182713,2182470,2182138,2181439,2180858	
chr11	2197363	2205508	2197480	2204795	+	Cre11.g472226.t1.1	Cre11.g472226.t1.1		2197363,2197850,2199662,2204531	2197708,2199343,2204008,2205508	
chr11	2375651	2377262	2375878	2377232	-	Cre11.g474650.t1.2	Cre11.g474650.t1.2		2377074,2376794,2375651	2377262,2376841,2376533	
chr11	2381363	2386314	2381786	2385273	+	Cre11.g474700.t1.1	Cre11.g474700.t1.1		2381363,2382201,2382409,2382623,2382901,2383129,2383623,2383893,2384131,2384525,2384730,2385123	2381939,2382274,2382467,2382741,2382993,2383242,2383703,2383931,2384307,2384590,2384810,2386314	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family that includes Low-CO2-inducible membrane protein LCI11
chr11	2386331	2389692	2386556	2389399	-	Cre11.g474750.t1.1	Cre11.g474750.t1.1		2389399,2389247,2388775,2388394,2388163,2387750,2387423,2387151,2386331	2389692,2389291,2389107,2388569,2388230,2388019,2387585,2387269,2386801	
chr11	2391897	2397452	2392572	2397317	-	OTA1	Cre11.g474800.t1.2		2397179,2396883,2396567,2396223,2395939,2395672,2395441,2395159,2394890,2394555,2394230,2393096,2392819,2391897	2397452,2397044,2396630,2396331,2395984,2395756,2395496,2395212,2394982,2394646,2394359,2393191,2392932,2392674	Ornithine-oxo-acid transaminase [EC:2.6.1.13] (ornithine aminotransferase); aminotransferase class III, similar to ornithine aminotransferase from Anopheles (GenBank EAA03164); targeted to mitochondria by homology and also predicted mitochondrial by Target-P; involved in proline and arginine metabolism
chr11	2397555	2401172	2397994	2400965	-	PUS17	Cre11.g474850.t1.1		2400893,2400623,2400364,2400006,2399761,2399490,2399087,2398753,2398347,2397555	2401172,2400736,2400516,2400191,2399814,2399624,2399383,2398899,2398631,2398078	
chr11	2401283	2402986	2401439	2402804	+	Cre11.g474900.t1.2	Cre11.g474900.t1.2		2401283,2401890,2402097,2402469,2402726	2401593,2401944,2402276,2402556,2402986	
chr11	2403033	2408261	2403080	2407314	+	Cre11.g474950.t1.1	Cre11.g474950.t1.1		2403033,2403272,2403566,2403890,2404112,2404354,2404571,2404730,2405015,2405216,2405434,2405698,2405970,2406302,2406682,2407062,2407230	2403086,2403324,2403661,2403941,2404216,2404401,2404606,2404809,2405063,2405281,2405508,2405818,2406132,2406439,2406859,2407124,2408261	
chr11	2409349	2417890	2409730	2417655	-	IFT121	Cre11.g475000.t1.1		2417638,2417215,2416808,2416518,2416150,2415893,2415644,2415420,2415014,2414692,2414444,2414202,2413956,2413571,2413347,2412938,2412503,2412293,2412003,2411770,2411435,2411222,2410914,2410498,2410092,2409349	2417890,2417250,2417101,2416635,2416297,2415996,2415730,2415504,2415126,2414874,2414529,2414286,2414039,2413777,2413454,2413170,2412725,2412400,2412170,2411850,2411620,2411287,2411099,2410749,2410301,2409937	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; component of IFT-A particle; identified in the flagellar basal body proteome as FBB1 [PMID: 15137946]; upregulated by deflagellation
chr11	2417983	2425804	2418114	2424733	+	Cre11.g475050.t1.2	Cre11.g475050.t1.2		2417983,2418286,2418636,2418846,2419220,2419971,2420205,2420601,2420834,2420994,2421267,2421681,2421980,2422465,2422752,2423110,2423573,2423895,2424271,2424607	2418198,2418399,2418677,2419003,2419469,2420039,2420431,2420713,2420883,2421104,2421533,2421803,2422343,2422616,2422986,2423384,2423728,2424146,2424486,2425804	
chr11	2425807	2427702	2426313	2427579	-	Cre11.g475100.t1.2	Cre11.g475100.t1.2		2427570,2427274,2426611,2425807	2427702,2427422,2426779,2426376	Related to GCN5.  Probably a diamine N-acetyltransferase
chr11	2429299	2433372	2429815	2433245	-	Cre11.g475150.t1.2	Cre11.g475150.t1.2		2433235,2432537,2431885,2431456,2431229,2430885,2430650,2430288,2429299	2433372,2432697,2431971,2431578,2431325,2431047,2430707,2430497,2429992	
chr11	2433427	2438412	2433673	2438179	-	Cre11.g475200.t1.1	Cre11.g475200.t1.1		2438055,2437779,2437451,2437201,2436767,2435638,2434889,2434207,2433427	2438412,2437855,2437629,2437306,2437027,2436390,2435437,2434706,2434031	
chr11	2440723	2444064	2441399	2443063	+	Cre11.g475300.t1.1	Cre11.g475300.t1.1		2440723,2441843,2442136,2442461,2442844	2441576,2441986,2442227,2442614,2444064	
chr11	2444123	2446384	2444166	2446095	+	Cre11.g475350.t1.1	Cre11.g475350.t1.1		2444123,2444804,2445193,2445601,2445981	2444511,2444962,2445274,2445752,2446384	
chr11	2446388	2450312	2446856	2450223	-	Cre11.g475400.t1.1	Cre11.g475400.t1.1		2450210,2450022,2449623,2449193,2448831,2448492,2448212,2447697,2447444,2446388	2450312,2450101,2449697,2449348,2448905,2448552,2448327,2447740,2447516,2447024	
chr11	2450367	2452152	2450407	2452109	-	Cre11.g475432.t1.2	Cre11.g475432.t1.2		2451926,2451620,2450936,2450367	2452152,2451678,2451224,2450620	
chr11	2452263	2455994	2452318	2455347	+	Cre11.g475450.t1.2	Cre11.g475450.t1.2		2452263,2452782,2453063,2453342,2453624,2453879,2454170,2454708,2454940,2455263	2452470,2452836,2453179,2453485,2453704,2454008,2454522,2454793,2455072,2455994	
chr11	2456118	2459784	2456750	2458530	+	Cre11.g475500.t1.2	Cre11.g475500.t1.2		2456118,2456698,2457072,2457406,2458353	2456346,2456903,2457278,2458233,2459784	
chr11	2459789	2464512	2461064	2463908	-	UMM10	Cre11.g475550.t1.2		2463706,2463532,2462812,2462368,2462065,2461653,2461274,2459789	2464512,2463605,2462861,2462509,2462136,2461876,2461375,2461110	UbiE/COQ5 methyltransferase family protein
chr11	2464567	2465942	2465545	2465711	-	Cre11.g475576.t1.1	Cre11.g475576.t1.1		2464567	2465942	
chr11	2466773	2483144	2467184	2482795	+	FAP362	Cre11.g475600.t1.2		2466773,2467418,2467626,2468142,2468611,2468903,2469577,2471921,2472199,2472539,2473235,2474260,2475484,2476104,2476721,2479322,2479617,2480050,2481243,2482141,2482674	2467268,2467490,2467867,2468320,2468670,2469404,2471700,2472019,2472315,2472907,2473915,2475179,2475970,2476515,2479126,2479416,2479796,2481057,2481869,2482478,2483144	Found in Cr and Volvox but not strongly conserved elsewhere
chr11	2483303	2484984	2483412	2484264	+	Cre11.g475626.t1.1	Cre11.g475626.t1.1		2483303,2484264	2484002,2484984	
chr11	2485113	2490194	2485484	2489534	+	Cre11.g475650.t1.1	Cre11.g475650.t1.1		2485113,2485451,2485663,2486215,2487321,2489233,2489465	2485244,2485523,2485980,2487118,2488927,2489295,2490194	
chr11	2490280	2500254	2491022	2500098	-	Cre11.g475700.t1.1	Cre11.g475700.t1.1		2500058,2499883,2499715,2499515,2499098,2498834,2498519,2498273,2497893,2497604,2497234,2496953,2496437,2496189,2495866,2495080,2494590,2494314,2493958,2493546,2493028,2492864,2492670,2492425,2492219,2491886,2491655,2491248,2490280	2500254,2499933,2499744,2499555,2499151,2498884,2498566,2498311,2498056,2497694,2497361,2497038,2496767,2496254,2495976,2495232,2494676,2494386,2494099,2493682,2493137,2492898,2492731,2492468,2492282,2491986,2491685,2491331,2491034	
chr11	2500309	2503794	2500693	2503341	-	Cre11.g475750.t1.1	Cre11.g475750.t1.1		2502930,2502443,2502218,2501865,2501364,2500309	2503794,2502813,2502310,2502000,2501748,2501067	
chr11	2503895	2505166	2503948	2505093	+	Cre11.g475800.t1.2	Cre11.g475800.t1.2		2503895,2504241,2504627,2504935,2505069	2504059,2504315,2504698,2504982,2505166	
chr11	2505169	2507580	2505762	2507496	-	ZNJ1	Cre11.g475850.t1.2		2507457,2507324,2507022,2506517,2506164,2505169	2507580,2507381,2507234,2506642,2506253,2505827	contains a Zn-finger domain with CXXCXGXG motif, also found in DnaJ co-chaperones; possibly directed to thylakoid lumen via TAT pathway
chr11	2507827	2513483	2509160	2513350	-	Cre11.g475900.t1.2	Cre11.g475900.t1.2		2512992,2512818,2512401,2511894,2511691,2511102,2510821,2510360,2510076,2509866,2509458,2507827	2513483,2512894,2512664,2512001,2511746,2511194,2510932,2510538,2510175,2509919,2509634,2509304	
chr11	2513615	2528386	2514204	2527146	+	HLM16	Cre11.g475950.t1.1		2513615,2515467,2515939,2516297,2516639,2518435,2521799,2522119,2522429,2526086,2526364,2526618,2526822,2527071	2515248,2515618,2515984,2516434,2518255,2521679,2521937,2522230,2523241,2526183,2526435,2526680,2526899,2528386	Protein containing SET domain, histone methyltransferase; weak similarity (mostly limited to SET domain) to Oryza sativa SDG717 and Arabidopsis thaliana SET25, ATXR7, SDG25 (At5g424).  ChromoDB SDG3413
chr11	2513615	2528386	2514204	2527146	+	HLM16	Cre11.g475950.t2.1		2513615,2514184,2515467,2515939,2516297,2516639,2518435,2521799,2522119,2522429,2526086,2526364,2526618,2526822,2527071	2514094,2515248,2515618,2515984,2516434,2518255,2521679,2521937,2522230,2523241,2526183,2526435,2526680,2526899,2528386	Protein containing SET domain, histone methyltransferase; weak similarity (mostly limited to SET domain) to Oryza sativa SDG717 and Arabidopsis thaliana SET25, ATXR7, SDG25 (At5g424).  ChromoDB SDG3413
chr11	2528405	2530024	2529663	2529926	-	Cre11.g476000.t1.2	Cre11.g476000.t1.2		2529820,2528405	2530024,2529746	
chr11	2530125	2533496	2530155	2532085	+	Cre11.g476026.t1.1	Cre11.g476026.t1.1		2530125,2530839,2531131,2531914	2530224,2530891,2531188,2533496	Transcription of this genome region is induced during nitrogen starvation; a small segment of the predicted protein shows similarity to COV1, membrane protein of unknown function, but this could be an annotation artefact
chr11	2533545	2546246	2533809	2545811	+	DHC15	Cre11.g476050.t1.2		2533545,2533920,2534041,2534210,2534513,2534842,2535382,2535973,2537492,2538533,2540248,2540861,2541213,2542716,2543074,2544090,2545013	2533848,2533969,2534110,2534284,2534674,2535051,2535877,2537258,2538310,2539945,2540694,2540989,2542475,2542895,2543865,2544863,2546246	Flagellar outer arm dynein heavy chain gamma, also known as PF28.  An ATPase/microtubule motor containing IQ motifs in N-terminal region and is phosphorylated on AAA domain; null-allele mutant was isolated (PMID 29743196)
chr11	2547513	2555444	2547995	2554367	-	MCD1	Cre11.g476100.t1.1		2554646,2554489,2554259,2553196,2548842,2547513	2555444,2554561,2554387,2553864,2553056,2548595	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; stabilizes petD mRNA; CDS should be extended by 46 codons at 5'-end: MQLCAELPTSANGPWAVRGSHKPSIRLSLLPSYSTWSHDEQRVASG; GenBank entry AAY44840.1 is wrong at N-terminus
chr11	2555785	2559682	2555883	2559208	+	Cre11.g476150.t1.2	Cre11.g476150.t1.2		2555785,2556156,2556445,2556869,2557365,2557671,2557995,2558197,2558576,2559050	2556088,2556224,2556473,2557018,2557448,2557706,2558048,2558280,2558660,2559682	
chr11	2559992	2567434	2562320	2567186	-	Cre11.g476200.t1.2	Cre11.g476200.t1.2		2566610,2565992,2565563,2565297,2564929,2564130,2563884,2563478,2563173,2562666,2559992	2567434,2566353,2565811,2565390,2565122,2564673,2563952,2563579,2563298,2562734,2562431	
chr11	2569659	2578264	2570367	2577938	-	Cre11.g476250.t1.2	Cre11.g476250.t1.2		2577871,2577561,2577111,2576382,2575827,2575540,2575007,2574590,2573946,2573412,2572906,2572434,2571451,2569659	2578264,2577753,2577222,2576551,2575989,2575611,2575357,2574709,2574150,2573572,2573034,2572580,2572199,2571190	
chr11	2579306	2581790	2580090	2581748	-	Cre11.g476300.t1.1	Cre11.g476300.t1.1		2581745,2581399,2579306	2581790,2581520,2580424	
chr11	2591855	2606468	2592460	2604886	+	Cre11.g476325.t1.1	Cre11.g476325.t1.1		2591855,2592957,2593610,2594093,2594527,2595129,2595463,2595906,2596271,2596779,2597345,2597693,2598428,2598713,2599124,2599586,2599961,2600405,2600812,2601131,2601481,2601810,2602353,2602805,2603327,2603748,2604087,2604472,2604866	2592622,2593001,2593675,2594185,2594601,2595188,2595556,2595985,2596404,2596893,2597398,2597857,2598472,2598826,2599221,2599662,2600098,2600502,2600910,2601222,2601526,2601922,2602516,2602901,2603398,2603895,2604135,2604606,2606468	
chr11	2606925	2612282	2607002	2611330	+	Cre11.g476351.t1.1	Cre11.g476351.t1.1		2606925,2607345,2607633,2608134,2608418,2608862,2609153,2609579,2610103,2610622,2611278	2607224,2607406,2607706,2608216,2608510,2608920,2609249,2609702,2610228,2610733,2612282	
chr11	2612475	2625172	2612711	2624601	+	FAP221	Cre11.g476376.t1.1		2612475,2612870,2613420,2613888,2614259,2614470,2614794,2615172,2615973,2616693,2617316,2617759,2618378,2619041,2619547,2620343,2620727,2621353,2621870,2622404,2622895,2623525,2624017,2624373	2612728,2613056,2613502,2613963,2614272,2614569,2614887,2615260,2616128,2616959,2617593,2617942,2618482,2619124,2619674,2620446,2620823,2621416,2621935,2622527,2623193,2623632,2624136,2625172	HC4 of C1d projection on central pair;  Similar to mammalian primary ciliary dyskinesia protein 1 (Pcdp1); this gene model is probably a fusion between RNA polymerase III subunit RPC82 and a protein very similar to FAP221 Cre49.g761347, probably due to an annotation error;  very Similar to FAP360 - not clear if this is a recent gene duplicatoin or an assembly artifact
chr11	2625236	2631344	2625724	2631238	-	MAG1	Cre11.g476400.t1.1		2631163,2630445,2629857,2627170,2626557,2626198,2625236	2631344,2630979,2630251,2627323,2626660,2626313,2625860	
chr11	2631455	2637626	2631572	2637045	+	Cre11.g476450.t1.1	Cre11.g476450.t1.1		2631455,2631808,2632592,2633023,2633540,2634720,2635180,2635998,2636359,2636835	2631626,2631927,2632937,2633072,2634434,2634997,2635719,2636137,2636473,2637626	
chr11	2637629	2646334	2638596	2645552	-	Cre11.g476500.t1.1	Cre11.g476500.t1.1		2645399,2644560,2644187,2643931,2643457,2643094,2642594,2642211,2641514,2641102,2640498,2639849,2639321,2638930,2637629	2646334,2644639,2644386,2643980,2643660,2643169,2642667,2642323,2641768,2641207,2640673,2640028,2639615,2638985,2638726	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]; null-allele passenger mutation was isolated (PMID 29743196)
chr11	2646435	2651890	2646908	2650992	+	ADH11	Cre11.g476550.t1.2		2646435,2647106,2647493,2647825,2648381,2648859,2649349,2649819,2650326,2650903	2646944,2647223,2647564,2647967,2648480,2648994,2649478,2649929,2650434,2651890	Alcohol dehydrogenase, zinc-containing
chr11	2652705	2660087	2653008	2659330	+	Cre11.g476600.t1.2	Cre11.g476600.t1.2		2652705,2653279,2653620,2653951,2654171,2654571,2655719,2656174,2656585,2657101,2657530,2657921,2658351,2658603,2658868,2659197	2653095,2653410,2653705,2654050,2654313,2654652,2655944,2656298,2656646,2657169,2657655,2657996,2658416,2658668,2658938,2660087	
chr11	2660725	2677044	2660851	2675985	+	PUL1	Cre11.g476650.t1.1		2660725,2661791,2662146,2662716,2663082,2663685,2664167,2664702,2665074,2665492,2667131,2667756,2668183,2668834,2669279,2669624,2670064,2670437,2670938,2671344,2671773,2672397,2672678,2673181,2673535,2673821,2674287,2675036,2675862	2661145,2661861,2662240,2662765,2663200,2663788,2664399,2664789,2665144,2665611,2667220,2667841,2668396,2668929,2669334,2669728,2670115,2670558,2671016,2671452,2671852,2672548,2672726,2673300,2673670,2673993,2674385,2675212,2677044	
chr11	2677169	2684294	2677774	2683572	-	MPA9	Cre11.g476700.t1.2		2683434,2683272,2683027,2682566,2682254,2681907,2681613,2681327,2680886,2680587,2680208,2679875,2679603,2679210,2679013,2678761,2678452,2678126,2677169	2684294,2683302,2683124,2682648,2682342,2682055,2681665,2681387,2681025,2680669,2680374,2679994,2679688,2679347,2679061,2678877,2678570,2678204,2677864	Metallophosphoesterase/metallo-dependent phosphatase with purpe acid phosphatase domain
chr11	2688429	2692590	2689991	2692557	-	FNR1	Cre11.g476750.t1.2		2692551,2692421,2692220,2692104,2691804,2691133,2690664,2690394,2688429	2692590,2692450,2692305,2692134,2691968,2691564,2690756,2690492,2690090	Ferredoxin-NADP reductase, chloroplast precursor; involved in photosynthetic linear, and possibly in cyclic, electron flow; major isoform
chr11	2693329	2696961	2694124	2696800	-	MRPL15	Cre11.g476800.t1.1		2696413,2696109,2695776,2695363,2694935,2694520,2693329	2696961,2696187,2695851,2695456,2695027,2694621,2694307	
chr11	2697085	2703306	2697147	2702527	+	DRC4	Cre11.g476850.t1.2		2697085,2697253,2697478,2697855,2699267,2699934,2700265,2700639,2700964,2701341,2701815,2702353	2697177,2697387,2697597,2698022,2699353,2700008,2700402,2700704,2701068,2701523,2701949,2703306	Component of dynein regulatory complex (N-DRC) of flagellar axoneme, originally identified by pf2 mutation; has similarity to mammalian growth-arrest specific gene product (Gas11/Gas8)
chr11	2710379	2714274	2710732	2713282	-	Cre11.g476900.t1.2	Cre11.g476900.t1.2		2714028,2713775,2713162,2712501,2711943,2711412,2710379	2714274,2713922,2713290,2712581,2712014,2711560,2711024	
chr11	2714375	2718676	2714577	2718192	+	Cre11.g476950.t1.1	Cre11.g476950.t1.1		2714375,2715096,2715440,2715816,2716111,2716653,2717195,2717519,2718029	2714862,2715294,2715553,2715961,2716399,2716918,2717327,2717678,2718676	
chr11	2718724	2726837	2718886	2725624	+	Cre11.g477000.t1.2	Cre11.g477000.t1.2		2718724,2719038,2719355,2719754,2721308,2721766,2722214,2723166,2724019,2724583,2725036	2718965,2719248,2719367,2719824,2721415,2722027,2722321,2723408,2724201,2724729,2726837	
chr11	2729675	2736286	2729891	2735921	+	Cre11.g477050.t1.1	Cre11.g477050.t1.1		2729675,2730286,2730864,2731347,2732193,2732903,2733541,2734072,2734536,2735350	2730099,2730357,2731120,2731529,2732394,2733342,2733744,2734272,2734879,2736286	
chr11	2736709	2742054	2737877	2741865	-	FAP97	Cre11.g477100.t1.2		2741739,2741255,2740217,2739868,2739389,2738966,2738531,2736709	2742054,2741659,2740612,2740052,2739522,2739027,2738655,2738169	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; serine endopeptidase
chr11	2742535	2758606	2743322	2758158	+	Cre11.g477150.t1.1	Cre11.g477150.t1.1		2742535,2742868,2743232,2743845,2744449,2746061,2746984,2747315,2747729,2748285,2748772,2749178,2749589,2750088,2750570,2751104,2751704,2752810,2753240,2753804,2754183,2754677,2755148,2755592,2755926,2756273,2756666,2757080,2757478,2758047	2742753,2743003,2743554,2744143,2745735,2746765,2747061,2747374,2747797,2748332,2748957,2749300,2749705,2750195,2750674,2751238,2751808,2752926,2753344,2753893,2754299,2754730,2755240,2755630,2756051,2756434,2756741,2757219,2757600,2758606	
chr11	2758885	2763754	2759191	2763156	+	IFR1	Cre11.g477200.t1.2		2758885,2759471,2759818,2760273,2760652,2761560,2761994,2762505,2763044	2759308,2759570,2759872,2760383,2760781,2761645,2762067,2762622,2763754	NmrA-like
chr11	2759088	2763754	2759191	2763156	+	IFR1	Cre11.g477200.t2.1		2759088,2759471,2759818,2760273,2760652,2761560,2761994,2762505,2763044	2759308,2759570,2759872,2760383,2760781,2761645,2762067,2762622,2763754	NmrA-like
chr11	2764425	2768544	2765051	2768247	-	Cre11.g477250.t1.1	Cre11.g477250.t1.1		2768206,2767717,2767072,2766902,2766471,2765934,2765451,2764425	2768544,2767876,2767164,2766946,2766596,2766086,2765534,2765306	
chr11	2768645	2773453	2768758	2772371	+	FAP8	Cre11.g477300.t1.1		2768645,2768886,2769306,2769624,2769840,2770212,2770983,2771670,2772188	2768799,2769234,2769552,2769736,2769919,2770530,2771174,2771903,2773453	PP2A-2r; interacts with and regulates phosphatase activity of PP2A catalytic subunit; found in flagellar proteome; Similar to Serine/Threonine Protein Phosphatase 2A Regulatory Subunit Homolog 2
chr11	2773695	2778336	2774091	2777151	+	Cre11.g477350.t1.1	Cre11.g477350.t1.1		2773695,2774456,2774753,2775081,2776920	2774277,2774506,2774824,2776769,2778336	
chr11	2778982	2796614	2780938	2796472	-	CYG43	Cre11.g477400.t1.1		2796419,2796208,2795821,2795065,2794659,2794258,2793800,2793367,2792888,2792490,2792061,2791462,2791081,2790743,2790283,2789896,2788114,2787675,2787127,2786673,2785348,2784911,2784566,2783545,2783224,2782196,2778982	2796614,2796303,2796008,2795438,2794734,2794390,2793938,2793427,2792946,2792729,2792295,2791571,2791170,2790826,2790387,2790007,2788934,2787815,2787225,2786876,2785425,2785102,2784670,2784226,2783321,2782978,2782111	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr11	2799579	2824344	2800683	2824054	-	Cre11.g477450.t1.1	Cre11.g477450.t1.1		2823900,2821585,2820698,2819632,2819337,2818928,2818738,2818171,2816591,2813007,2807600,2803727,2803231,2802765,2802250,2801556,2799579	2824344,2823625,2821307,2819970,2819394,2819046,2818809,2818485,2817947,2816380,2812780,2807380,2803467,2802911,2802400,2801926,2801421	
chr11	2824455	2830072	2824674	2828980	+	Cre11.g477500.t1.2	Cre11.g477500.t1.2		2824455,2825104,2825596,2826266,2826967,2827582,2828388,2828881	2824691,2825419,2825695,2826324,2827036,2827738,2828457,2830072	
chr11	2830682	2832544	2831720	2832189	-	Cre11.g477550.t1.2	Cre11.g477550.t1.2		2832276,2830682	2832544,2832205	
chr11	2832609	2855164	2833086	2855099	-	CHLH2	Cre11.g477625.t1.1		2854790,2853558,2852758,2852304,2851841,2851471,2850561,2849794,2849102,2848737,2848094,2847694,2847260,2846806,2846318,2845869,2845456,2845036,2843934,2843353,2842682,2842307,2841861,2841083,2840469,2839901,2839504,2838969,2838632,2838314,2837996,2837739,2837289,2836881,2836505,2836103,2835722,2835327,2834977,2834452,2834012,2833539,2832609	2855164,2853977,2853059,2852352,2851948,2851554,2850686,2849904,2849165,2848845,2848259,2847789,2847349,2846896,2846412,2845949,2845539,2845092,2844098,2843508,2842822,2842406,2841986,2841315,2840501,2840185,2839569,2839035,2838693,2838436,2838037,2837835,2837458,2836983,2836598,2836175,2835807,2835429,2835048,2834672,2834132,2833601,2833314	(COBN); Putative Magnesium chelatase H subunit; higher similarity to bacterial and cyanobacterial BchH proteins than plant ChlH orthologues; Possible magnesium protoporphyrin or protoporphyrin binding protein [PMID: 1146986
chr11	2855269	2863534	2856522	2863240	-	Cre11.g477700.t1.1	Cre11.g477700.t1.1		2863230,2861977,2861130,2860609,2860083,2859375,2859018,2858551,2858202,2857683,2855269	2863534,2862236,2861261,2860819,2860309,2859746,2859221,2858751,2858285,2857786,2857414	
chr11	2864099	2865234	2864399	2864974	-	Cre11.g477733.t1.2	Cre11.g477733.t1.2		2864844,2864099	2865234,2864668	
chr11	2865329	2869534	2866424	2869217	-	Cre11.g477750.t1.2	Cre11.g477750.t1.2		2869110,2868851,2868539,2867899,2867456,2866999,2865329	2869534,2868934,2868602,2868187,2867541,2867307,2866688	
chr11	2870005	2882057	2870113	2881367	+	HDA10	Cre11.g477800.t1.1		2870005,2870388,2870815,2871175,2871450,2871868,2872466,2873309,2874073,2874502,2875132,2875665,2876301,2876971,2877265,2878209,2878574,2879307,2880127,2880589,2881298	2870169,2870466,2870902,2871227,2871577,2872129,2873020,2873564,2874137,2874561,2875272,2875824,2876353,2877104,2877710,2878275,2878636,2879456,2880260,2880938,2882057	Histone deacetylase, ChromDB HDA3408
chr11	2882573	2897951	2883516	2897831	-	TXC1	Cre11.g477850.t1.1		2897693,2897462,2896572,2896084,2895778,2895237,2894018,2893360,2892116,2891752,2890937,2890665,2890064,2889547,2889196,2888771,2888406,2888027,2887747,2887013,2886822,2886403,2885913,2885574,2884973,2884375,2883913,2882573	2897951,2897542,2896691,2896224,2895810,2895377,2894226,2893549,2892216,2891886,2891073,2890735,2890164,2889692,2889260,2888923,2888471,2888087,2887844,2887237,2886866,2886521,2886024,2885645,2885104,2884450,2883986,2883657	Putative transcriptional coactivator (p100 homolog) containing Tudor and staphylococcal nuclease domain; presumably associated with RNA induced silencing complex (RISC)
chr11	2898486	2901904	2899666	2901724	-	Cre11.g477900.t1.2	Cre11.g477900.t1.2		2901538,2898486	2901904,2901346	
chr11	2902725	2910236	2902802	2909558	+	Cre11.g477950.t1.1	Cre11.g477950.t1.1		2902725,2903466,2903805,2904152,2904447,2904797,2905252,2905732,2906413,2907038,2907414,2907749	2902880,2903600,2903870,2904214,2904512,2904988,2905366,2905832,2906508,2907129,2907636,2910236	
chr11	2911405	2917866	2911811	2917137	+	Cre11.g478000.t1.1	Cre11.g478000.t1.1		2911405,2913373,2913899,2914179,2914610,2915173,2915457	2913151,2913529,2914008,2914270,2914740,2915238,2917866	
chr11	2917925	2924916	2918170	2924253	+	Cre11.g478025.t1.1	Cre11.g478025.t1.1		2917925,2920377,2920725,2921133,2921411,2921758,2922256,2922605,2923325	2919786,2920485,2920801,2921227,2921517,2921823,2922496,2923097,2924916	
chr11	2925605	2932076	2925990	2931746	+	Cre11.g478050.t1.1	Cre11.g478050.t1.1		2925605,2926191,2929152,2930687	2926051,2928707,2930398,2932076	
chr11	2925605	2932076	2926525	2931746	+	Cre11.g478050.t2.1	Cre11.g478050.t2.1		2925605,2926187,2929152,2930687	2925921,2928707,2930398,2932076	
chr11	2932083	2934444	2932613	2934235	-	Cre11.g478100.t1.2	Cre11.g478100.t1.2		2934091,2933295,2932083	2934444,2933396,2932850	
chr11	2934995	2947086	2935093	2946440	+	Cre11.g478128.t1.1	Cre11.g478128.t1.1		2934995,2935358,2936475,2936856,2937538,2937905,2938449,2938844,2939219,2939814,2940423,2940836,2941531,2942919,2943243,2944369,2944928,2945305,2945725,2946290	2935258,2935555,2936573,2936926,2937671,2937969,2938541,2939072,2939401,2939944,2940538,2940917,2941640,2942964,2943332,2944434,2945012,2945397,2945804,2947086	
chr11	2947097	2959824	2947748	2959697	-	AP1B1	Cre11.g478156.t1.1		2959655,2959341,2958450,2957993,2957477,2957074,2954851,2954485,2953987,2953634,2953181,2952827,2952463,2951768,2951244,2950547,2950062,2949522,2948990,2948663,2948280,2947097	2959824,2959577,2958563,2958097,2957533,2957178,2954943,2954540,2954116,2953701,2953304,2952895,2952564,2951848,2951363,2950772,2950306,2949590,2949130,2948758,2948387,2947940	Expressed protein. Beta1-Adaptin, clathrin adaptor complex subunit, putative member of AP-1 complex; May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	2947097	2959824	2947748	2959697	-	AP1B1	Cre11.g478156.t2.1		2959660,2959341,2958450,2957993,2957477,2957074,2954851,2954485,2953987,2953634,2953181,2952827,2952463,2951768,2951244,2950547,2950062,2949522,2948990,2948663,2948280,2947097	2959824,2959582,2958563,2958097,2957533,2957178,2954943,2954540,2954116,2953701,2953304,2952895,2952564,2951848,2951363,2950772,2950306,2949590,2949130,2948758,2948387,2947940	Expressed protein. Beta1-Adaptin, clathrin adaptor complex subunit, putative member of AP-1 complex; May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	2959945	2973986	2960284	2973608	+	Cre11.g478184.t1.1	Cre11.g478184.t1.1		2959945,2961388,2961974,2963036,2963501,2964601,2965252,2965801,2966341,2967072,2967377,2967665,2968115,2968641,2969147,2969700,2970219,2970782,2971171,2971550,2971987,2972984	2960962,2961452,2962489,2963327,2964385,2964675,2965496,2966078,2966512,2967141,2967430,2967742,2968225,2968826,2969295,2969832,2970284,2970886,2971233,2971819,2972685,2973986	
chr11	2974118	2975454	2975019	2975413	-	Cre11.g478212.t1.1	Cre11.g478212.t1.1		2974118	2975454	
chr11	2975569	2982864	2976391	2982562	-	Cre11.g478240.t1.1	Cre11.g478240.t1.1		2982417,2982148,2981539,2981144,2980527,2979965,2979217,2978815,2978319,2977879,2977460,2976945,2976707,2975569	2982864,2982253,2981653,2981239,2980619,2980069,2979321,2978885,2978361,2977980,2977552,2976974,2976763,2976445	
chr11	2983145	2987214	2983328	2986393	+	SOM4	Cre11.g478300.t1.1		2983145,2983693,2984050,2984832,2985183,2985523,2986284	2983433,2983784,2984378,2984932,2985273,2985685,2987214	
chr11	2987249	2989934	2988113	2989838	-	Cre11.g478350.t1.2	Cre11.g478350.t1.2		2989736,2988994,2988551,2987249	2989934,2989087,2988669,2988230	
chr11	2990299	2996014	2990936	2995356	-	Cre11.g478400.t1.1	Cre11.g478400.t1.1		2995323,2992818,2992426,2992152,2990299	2996014,2995074,2992478,2992204,2991906	
chr11	2996369	2999984	2998158	2999339	-	Cre11.g478450.t1.1	Cre11.g478450.t1.1		2999143,2998909,2998265,2996369	2999984,2998992,2998419,2998206	
chr11	3000340	3008865	3000562	3008523	-	Cre11.g478456.t1.2	Cre11.g478456.t1.2		3008501,3007878,3007346,3006967,3006613,3006157,3005713,3004972,3004255,3003640,3003368,3002725,3000340	3008865,3008184,3007436,3007070,3006737,3006372,3006018,3005172,3004703,3003849,3003399,3003240,3002378	
chr11	3008941	3016115	3010595	3015984	-	Cre11.g478528.t1.1	Cre11.g478528.t1.1		3015862,3015355,3014011,3013333,3012593,3012182,3011813,3011393,3011121,3008941	3016115,3015658,3014097,3013404,3012658,3012319,3011938,3011462,3011260,3010703	
chr11	3016576	3024558	3016985	3023213	+	Cre11.g478600.t1.2	Cre11.g478600.t1.2		3016576,3017498,3018076,3018596,3019232,3020103,3020634,3021136,3021609,3021994,3022652,3023125	3017157,3017820,3018110,3018871,3019543,3020372,3020909,3021417,3021743,3022266,3022936,3024558	
chr11	3024606	3026877	3024719	3026537	+	Cre11.g478626.t1.1	Cre11.g478626.t1.1		3024606,3025191,3025600,3026023,3026488	3024867,3025322,3025706,3026075,3026877	
chr11	3026970	3032585	3027465	3032541	-	Cre11.g478650.t1.2	Cre11.g478650.t1.2		3032398,3032167,3031962,3031264,3030550,3029817,3029449,3028815,3026970	3032585,3032334,3032033,3031330,3030642,3029944,3029575,3028940,3028200	
chr11	3032679	3034925	3033343	3034874	-	FKB15-4	Cre11.g478700.t1.2		3034784,3034641,3034235,3033947,3033685,3032679	3034925,3034703,3034315,3033984,3033758,3033390	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (Immunophilin); probably secreted; Target P prediction: TP length=22; linked to FKB15-2 and FKB15-1
chr11	3035123	3038385	3035646	3038291	-	FKB15-2	Cre11.g478750.t1.2		3038171,3038000,3037742,3037105,3036621,3036234,3035849,3035123	3038385,3038062,3037822,3037142,3036694,3036289,3035929,3035676	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (Immunophilin); probably secreted; linked to FKB15-4 and FKB15-1
chr11	3040676	3046232	3040720	3045571	+	Cre11.g478800.t1.2	Cre11.g478800.t1.2		3040676,3041206,3041948,3042358,3042748,3043539,3044119,3044472,3045049	3041050,3041625,3042034,3042416,3042850,3043715,3044226,3044702,3046232	
chr11	3046366	3050039	3046670	3049426	+	Cre11.g478850.t1.2	Cre11.g478850.t1.2		3046366,3046877,3047306,3047526,3047804,3048352,3048749,3049279	3046691,3046996,3047351,3047610,3047857,3048442,3048853,3050039	
chr11	3054946	3068577	3054972	3067661	+	Cre11.g478950.t1.2	Cre11.g478950.t1.2		3054946,3055472,3056084,3057632,3057972,3059216,3059648,3060101,3060416,3061106,3062554,3062786,3063125,3063509,3066194,3066888,3067661	3055188,3055887,3056226,3057726,3058178,3059314,3059749,3060222,3060831,3062370,3062634,3062874,3063347,3064251,3066776,3067524,3068577	
chr11	3068626	3092657	3068769	3092151	+	Cre11.g478966.t1.1	Cre11.g478966.t1.1		3068626,3069026,3069493,3082609,3083041,3083494,3083809,3084499,3091040,3091272,3091611,3091995	3068826,3069097,3069987,3082707,3083142,3083615,3084224,3085763,3091120,3091360,3091833,3092657	
chr11	3097876	3099014	3098046	3098254	+	Cre11.g478982.t1.1	Cre11.g478982.t1.1		3097876	3099014	
chr11	3099206	3111096	3099393	3108266	+	CYG7	Cre11.g479000.t1.1		3099206,3099650,3100117,3100849,3101214,3101579,3101812,3102081,3102381,3102708,3102924,3103245,3103559,3103804,3104023,3104256,3104539,3104794,3104991,3105258,3105645,3106074,3106331	3099450,3099721,3100655,3100908,3101325,3101670,3101928,3102135,3102449,3102779,3103012,3103397,3103665,3103872,3104114,3104351,3104590,3104858,3105072,3105319,3105821,3106133,3111096	Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr11	3111706	3114777	3111735	3113602	+	FKB15-1	Cre11.g479050.t1.2		3111706,3112082,3112489,3112893,3113281,3113549	3111855,3112144,3112579,3112920,3113357,3114777	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase), secreted isoform; Target P prediction: TP length=22; found in the flagellar proteome; linked to FKB15-2 and FKB15-4
chr11	3114896	3120307	3115135	3117637	+	Cre11.g479100.t1.1	Cre11.g479100.t1.1		3114896,3115472	3115274,3120307	
chr11	3122649	3126175	3123026	3125721	-	Cre11.g479150.t1.2	Cre11.g479150.t1.2		3125691,3125459,3122649	3126175,3125543,3125227	
chr11	3122649	3126185	3123026	3125505	-	Cre11.g479150.t2.1	Cre11.g479150.t2.1		3126070,3125459,3122649	3126185,3125543,3125227	
chr11	3122649	3126185	3123026	3125505	-	Cre11.g479150.t3.1	Cre11.g479150.t3.1		3126070,3125459,3124308,3122649	3126185,3125543,3125227,3123407	
chr11	3127536	3135607	3127641	3135307	+	Cre11.g479200.t1.1	Cre11.g479200.t1.1		3127536,3127919,3128185,3128486,3129155,3129732,3130196,3130539,3130973,3131696,3132082,3132473,3133002,3133372,3133626,3134035,3134914,3135268	3127765,3128073,3128250,3128781,3129330,3129922,3130305,3130692,3131167,3131741,3132277,3132776,3133163,3133431,3133676,3134232,3134994,3135607	
chr11	3135613	3143285	3137090	3143222	-	Cre11.g479250.t1.2	Cre11.g479250.t1.2		3143114,3142804,3142426,3142117,3141620,3141176,3140797,3140305,3139737,3139391,3138994,3138606,3137985,3137577,3135613	3143285,3142919,3142525,3142212,3141739,3141235,3140874,3140409,3139811,3139460,3139179,3138679,3138134,3137673,3137257	
chr11	3144704	3159295	3145722	3158810	-	Cre11.g479300.t1.1	Cre11.g479300.t1.1		3159143,3158041,3157770,3156842,3156504,3155512,3155153,3154690,3154318,3153994,3153327,3152375,3151789,3151370,3150976,3150395,3149703,3148688,3148084,3147643,3147084,3146649,3146265,3144704	3159295,3158892,3157939,3157639,3156566,3156219,3155305,3154767,3154403,3154060,3153714,3153080,3152140,3151474,3151032,3150448,3149928,3148800,3148356,3147753,3147232,3146708,3146352,3145818	SNF2-related helicase with nitrogenase component 1 conserved site which may indicate involvement in iron-molybdenum cofactor biosynthesis.  ChromoDB CHR346; May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	3144704	3159295	3145722	3158810	-	Cre11.g479300.t2.1	Cre11.g479300.t2.1		3159143,3158041,3157770,3156842,3156504,3155512,3155153,3154690,3154318,3153994,3153327,3152375,3151789,3151370,3150976,3150395,3149703,3148688,3148084,3147643,3147084,3146649,3146265,3144704	3159295,3158877,3157939,3157639,3156566,3156219,3155305,3154767,3154403,3154060,3153714,3153080,3152140,3151474,3151032,3150448,3149928,3148800,3148356,3147753,3147232,3146708,3146352,3145818	SNF2-related helicase with nitrogenase component 1 conserved site which may indicate involvement in iron-molybdenum cofactor biosynthesis.  ChromoDB CHR346; May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	3159416	3173173	3159728	3172577	+	Cre11.g479350.t1.1	Cre11.g479350.t1.1		3159416,3160147,3160464,3161764,3162622,3162949,3163251,3163617,3163964,3164187,3164565,3164938,3165600,3165964,3166497,3166933,3167189,3167689,3167932,3168317,3170856,3171826,3172264,3172508	3159962,3160260,3161488,3162247,3162717,3163035,3163366,3163724,3164012,3164279,3164793,3165310,3165681,3166275,3166646,3166977,3167458,3167772,3168023,3170659,3171489,3171928,3172376,3173173	
chr11	3159416	3173173	3159728	3172577	+	Cre11.g479350.t2.1	Cre11.g479350.t2.1		3159416,3160147,3160464,3161767,3162622,3162949,3163251,3163617,3163964,3164187,3164565,3164938,3165600,3165964,3166497,3166933,3167189,3167689,3167932,3168317,3170856,3171826,3172264,3172508	3159962,3160260,3161488,3162247,3162717,3163035,3163366,3163724,3164012,3164279,3164793,3165310,3165681,3166275,3166646,3166977,3167458,3167772,3168023,3170659,3171489,3171928,3172376,3173173	
chr11	3174424	3187365	3175179	3186095	-	Cre11.g479383.t1.1	Cre11.g479383.t1.1		3187188,3186542,3185426,3184069,3183400,3182967,3182397,3182143,3181884,3181569,3181272,3181088,3180751,3180410,3180058,3179496,3175765,3174424	3187365,3186601,3186119,3185106,3183909,3183148,3182793,3182241,3181970,3181661,3181351,3181136,3180779,3180566,3180270,3179881,3179377,3175596	
chr11	3187700	3198895	3188532	3198521	-	Cre11.g479416.t1.1	Cre11.g479416.t1.1		3198256,3194934,3191106,3189183,3187700	3198895,3198067,3194867,3190945,3188596	
chr11	3199000	3210325	3199775	3209952	-	Cre11.g479450.t1.1	Cre11.g479450.t1.1		3209812,3209202,3208773,3208450,3208158,3207818,3207564,3206626,3206334,3205989,3205793,3205424,3205053,3204619,3204302,3203800,3203434,3202672,3202447,3202121,3201715,3201381,3200927,3200503,3200309,3199000	3210325,3209355,3208823,3208512,3208183,3207878,3207660,3206738,3206391,3206097,3205847,3205519,3205218,3204781,3204364,3203905,3203547,3203156,3202519,3202168,3201813,3201539,3201027,3200572,3200417,3200128	null-allele passenger mutation was isolated (PMID 29743196)
chr11	3210650	3213735	3211981	3213700	-	PRPL4	Cre11.g479500.t1.2		3213484,3212980,3212733,3210650	3213735,3213120,3212888,3212200	imported to chloroplast; Chloroplast large ribosomal subunit protein L4
chr11	3213846	3224587	3214432	3223639	+	Cre11.g479550.t1.1	Cre11.g479550.t1.1		3213846,3214416,3215428,3215713,3216195,3216399,3216974,3217280,3217767,3218603,3219050,3219652,3220384,3220870,3221948,3222478,3223315	3214116,3215109,3215494,3215790,3216260,3216722,3217096,3217336,3218339,3218686,3219328,3220074,3220493,3221225,3222287,3222670,3224587	
chr11	3213846	3224587	3214432	3223639	+	Cre11.g479550.t2.1	Cre11.g479550.t2.1		3213846,3214416,3215428,3215713,3216195,3216399,3216974,3217280,3217767,3218603,3219050,3219652,3220384,3220870,3221954,3222478,3223315	3214116,3215109,3215494,3215790,3216260,3216722,3217096,3217336,3218339,3218686,3219328,3220074,3220493,3221225,3222287,3222670,3224587	
chr11	3225090	3234185	3225546	3233726	-	CAX6	Cre11.g479600.t1.1		3233701,3233353,3232934,3232688,3232294,3231730,3231495,3231141,3230843,3230231,3229850,3229493,3228896,3228401,3228146,3227901,3227459,3226932,3226518,3225939,3225090	3234185,3233429,3233016,3232711,3232420,3231786,3231612,3231208,3230863,3230358,3230014,3229640,3229010,3228519,3228220,3227999,3227632,3227147,3226658,3226194,3225701	
chr11	3225090	3234185	3225546	3233726	-	CAX6	Cre11.g479600.t2.1		3233701,3233353,3232934,3232688,3232294,3231730,3231495,3231141,3230231,3229850,3229493,3228896,3228401,3228146,3227901,3227459,3226932,3226518,3225939,3225090	3234185,3233429,3233016,3232711,3232420,3231786,3231612,3231208,3230358,3230014,3229640,3229010,3228519,3228220,3227999,3227632,3227147,3226658,3226194,3225701	
chr11	3234241	3238105	3234676	3237681	-	Cre11.g479650.t1.2	Cre11.g479650.t1.2		3237585,3237313,3236801,3236441,3235960,3235644,3235287,3234241	3238105,3237411,3236935,3236527,3236034,3235732,3235377,3234808	
chr11	3238226	3241737	3238261	3240097	+	DFO1	Cre11.g479700.t1.2		3238226,3238477,3239407,3239935	3238327,3238658,3239518,3241737	similar to N-terminus of HCF101
chr11	3242746	3252317	3242908	3251439	+	SRP54L	Cre11.g479750.t1.2		3242746,3243767,3244749,3245310,3245993,3246578,3246986,3247451,3247777,3248130,3248476,3248784,3249053,3249527,3250034,3250260,3250635,3251025,3251373	3243028,3243890,3244798,3245399,3246130,3246742,3247078,3247558,3247810,3248219,3248591,3248855,3249115,3249604,3250100,3250306,3250721,3251066,3252317	Expressed Protein. Similar to the Chloroplast SRP54 component of Signal Recognition particle, called FFC (Fifty-Four-Chloroplast Homologue) in land plants, almost identical to gb: AAK12834.
chr11	3252606	3256127	3252694	3254405	+	Cre11.g479800.t1.1	Cre11.g479800.t1.1		3252606,3252799,3253160,3253488	3252721,3252872,3253323,3256127	
chr11	3256314	3261697	3256460	3261353	+	CYN59	Cre11.g479850.t1.2		3256314,3256660,3256966,3257651,3258013,3258439,3258943,3259308,3259727,3260156,3260579	3256558,3256764,3257146,3257730,3258109,3258574,3259027,3259391,3259840,3260216,3261697	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type. RNA-binding region RNP-1-RRM / RDG-rich domain; similar to AtCYP59; no targeting peptide, probably nucleus located (by homology)
chr11	3261789	3265185	3263440	3265001	-	Cre11.g479900.t1.2	Cre11.g479900.t1.2		3264489,3263843,3261789	3265185,3264239,3263509	
chr11	3265240	3270175	3266608	3270056	-	CGL7	Cre11.g479950.t1.2		3269914,3269725,3269549,3269196,3268677,3267958,3267446,3265240	3270175,3269823,3269634,3269314,3268830,3268137,3267530,3266895	
chr11	3270355	3273815	3271361	3273579	-	Cre11.g480000.t1.2	Cre11.g480000.t1.2		3273351,3273171,3272573,3272198,3271877,3270355	3273815,3273279,3272814,3272371,3271942,3271463	
chr11	3273980	3276105	3274514	3276033	-	EXN14	Cre11.g480050.t1.1		3276018,3275856,3275533,3273980	3276105,3275929,3275699,3275425	May have poly(A)-specific ribonuclease activity
chr11	3276160	3280115	3276590	3280084	-	Cre11.g480060.t1.2	Cre11.g480060.t1.2		3279121,3278783,3278283,3277907,3277461,3276968,3276160	3280115,3278925,3278352,3278074,3277562,3277114,3276737	
chr11	3280170	3281395	3280223	3281280	-	Cre11.g480079.t1.2	Cre11.g480079.t1.2		3281187,3280894,3280582,3280170	3281395,3280947,3280651,3280267	
chr11	3282497	3286715	3284141	3286468	-	Cre11.g480100.t1.1	Cre11.g480100.t1.1		3286347,3285972,3285545,3285251,3284440,3282497	3286715,3286111,3285713,3285412,3284615,3284189	
chr11	3286866	3289137	3286937	3287222	+	Cre11.g480116.t1.1	Cre11.g480116.t1.1		3286866,3287088	3287016,3289137	
chr11	3297196	3299394	3297692	3298433	+	Cre11.g480132.t1.1	Cre11.g480132.t1.1		3297196,3298383	3298146,3299394	
chr11	3299930	3303035	3300781	3302987	-	RPS14	Cre11.g480150.t1.2		3302723,3302173,3299930	3303035,3302302,3300849	Cytosolic 40S small ribosomal subunit protein S14
chr11	3303156	3313685	3303248	3312407	+	Cre11.g480200.t1.1	Cre11.g480200.t1.1		3303156,3303571,3303859,3304615,3305052,3305374,3305704,3306544,3307493,3307832,3308925,3309487,3309923,3311890,3312281	3303335,3303654,3303968,3304662,3305106,3305427,3306324,3307302,3307594,3308726,3309041,3309644,3311721,3311974,3313685	
chr11	3321053	3328235	3322072	3328091	-	Cre11.g480250.t1.1	Cre11.g480250.t1.1		3327842,3327510,3327184,3326903,3326542,3326272,3325613,3325347,3324903,3324444,3324141,3323849,3323516,3323255,3322971,3322660,3322407,3321053	3328235,3327629,3327276,3327005,3326674,3326326,3325763,3325391,3325079,3324615,3324219,3323905,3323614,3323304,3323014,3322786,3322459,3322257	
chr11	3321169	3328235	3322072	3328091	-	Cre11.g480250.t2.1	Cre11.g480250.t2.1		3327842,3327510,3327184,3326903,3326542,3326272,3325613,3325347,3324903,3324444,3324141,3323849,3323516,3323255,3322971,3322660,3322407,3321169	3328235,3327629,3327276,3327005,3326674,3326326,3325763,3325391,3325079,3324615,3324219,3323905,3323614,3323304,3323014,3322786,3322459,3322257	
chr11	3328646	3338305	3328947	3337896	-	Cre11.g480300.t1.1	Cre11.g480300.t1.1		3337719,3337397,3337098,3336774,3336504,3335940,3335683,3335361,3333807,3333590,3333285,3333015,3331912,3331371,3328646	3338305,3337528,3337148,3336885,3336580,3336212,3335754,3335441,3335151,3333663,3333407,3333125,3332814,3331727,3331116	
chr11	3338576	3346147	3338994	3345628	+	Cre11.g480350.t1.1	Cre11.g480350.t1.1		3338576,3339915,3340490,3340831,3341404,3341893,3342254,3342807,3343702,3344114,3344481,3344941,3345169	3339564,3340063,3340639,3340905,3341539,3342003,3342499,3343463,3343785,3344233,3344545,3345007,3346147	
chr11	3348540	3360615	3349644	3360180	-	PHC39	Cre11.g480400.t1.1		3360104,3359742,3359367,3358920,3355415,3354604,3353331,3352712,3351776,3350610,3350257,3349988,3348540	3360615,3359875,3359468,3359019,3358665,3354928,3353688,3353123,3352108,3351514,3350406,3350090,3349698	
chr11	3363251	3377643	3363949	3376213	+	PHC42	Cre11.g480451.t1.1		3363251,3364088,3364413,3364789,3365316,3365617,3367361,3371096,3373051,3375409,3375803,3376159	3363953,3364177,3364600,3364890,3365409,3366970,3370885,3372887,3375224,3375558,3375902,3377643	contains LTP domain
chr11	3379021	3380152	3379268	3379449	+	Cre11.g480502.t1.1	Cre11.g480502.t1.1		3379021	3380152	
chr11	3380165	3387870	3382992	3387420	-	Cre11.g480551.t1.2	Cre11.g480551.t1.2		3387620,3387360,3387206,3387054,3386942,3385871,3383798,3380165	3387870,3387528,3387269,3387112,3386974,3386636,3385668,3383571	
chr11	3389042	3391930	3389789	3391546	-	Cre11.g480600.t1.2	Cre11.g480600.t1.2		3391228,3390548,3389042	3391930,3391075,3390284	
chr11	3389042	3391820	3389789	3391546	-	Cre11.g480600.t2.1	Cre11.g480600.t2.1		3391228,3390548,3389042	3391820,3391075,3390284	
chr11	3392291	3397652	3392468	3396617	+	Cre11.g480650.t1.2	Cre11.g480650.t1.2		3392291,3392774,3393089,3393438,3394010,3394443,3395151,3395528,3395925,3396372,3396572	3392540,3392862,3393138,3393535,3394133,3394765,3395240,3395618,3396040,3396416,3397652	
chr11	3397701	3405271	3397992	3404952	+	Cre11.g480700.t1.1	Cre11.g480700.t1.1		3397701,3397950,3399824,3400784,3401656,3402361,3402939,3403569,3404148,3404943	3397771,3398634,3400406,3401208,3401923,3402446,3403010,3403644,3404545,3405271	
chr11	3397701	3405271	3397992	3404952	+	Cre11.g480700.t2.1	Cre11.g480700.t2.1		3397701,3397950,3399824,3400784,3401656,3402361,3402939,3403569,3404154,3404943	3397771,3398634,3400406,3401208,3401923,3402446,3403010,3403644,3404545,3405271	
chr11	3405321	3409962	3405446	3408826	+	Cre11.g480725.t1.1	Cre11.g480725.t1.1		3405321,3406881,3407912,3408466	3405797,3407006,3408040,3409962	
chr11	3412208	3417590	3412808	3417427	-	Cre11.g480750.t1.1	Cre11.g480750.t1.1		3417275,3416915,3416551,3416058,3415852,3415676,3414875,3413798,3412208	3417590,3417011,3416668,3416139,3415936,3415726,3415457,3414648,3413585	
chr11	3417721	3421612	3417900	3421160	+	Cre11.g480800.t1.2	Cre11.g480800.t1.2		3417721,3418311,3419003,3419533,3420003,3420368,3420929	3418025,3418376,3419277,3419600,3420089,3420580,3421612	
chr11	3421615	3428650	3422392	3428564	-	RRA3	Cre11.g480851.t1.1		3428000,3426170,3425812,3425423,3424894,3424282,3423800,3423406,3422860,3421615	3428650,3426217,3425918,3425510,3424989,3424442,3423902,3423515,3422973,3422459	GT77 family
chr11	3428751	3432224	3429696	3431770	+	Cre11.g480900.t1.2	Cre11.g480900.t1.2		3428751,3428996,3429360,3429688,3430000,3430234	3428876,3429114,3429372,3429754,3430034,3432224	null-allele passenger mutation was isolated (PMID 29743196)
chr11	3432312	3434120	3432899	3434078	-	Cre11.g480950.t1.2	Cre11.g480950.t1.2		3433911,3433520,3433227,3432312	3434120,3433568,3433390,3432990	High mobility group proteins, non-histone components of chromatin.  ChromoDB HMGB346
chr11	3434420	3439750	3435530	3439657	-	Cre11.g481000.t1.2	Cre11.g481000.t1.2		3439472,3439040,3438662,3437709,3437352,3436839,3436316,3435939,3434420	3439750,3439364,3438727,3437834,3437399,3436943,3436369,3436026,3435631	
chr11	3440275	3445160	3441558	3445048	-	Cre11.g481050.t1.2	Cre11.g481050.t1.2		3445035,3444871,3444327,3443931,3443515,3443082,3440275	3445160,3444951,3444517,3444029,3443599,3443237,3441734	High mobility group protein, ChromDB HMGB342; a putative chromatin-associated HMGB protein containing two HMG boxes
chr11	3445261	3447898	3446136	3446688	+	Cre11.g481082.t1.2	Cre11.g481082.t1.2		3445261,3445997,3446563	3445482,3446332,3447898	
chr11	3445261	3447898	3446136	3446672	+	Cre11.g481082.t2.1	Cre11.g481082.t2.1		3445261,3445997,3446563	3445482,3446267,3447898	
chr11	3448551	3452140	3448898	3451803	-	Cre11.g481093.t1.1	Cre11.g481093.t1.1		3451990,3450723,3450524,3450253,3449851,3448551	3452140,3451868,3450601,3450334,3449909,3449465	
chr11	3452235	3457120	3452562	3456780	-	Cre11.g481104.t1.1	Cre11.g481104.t1.1		3456624,3456216,3455705,3454710,3453667,3453173,3452235	3457120,3456393,3455880,3455369,3454194,3453332,3452903	
chr11	3457341	3463302	3457468	3462754	+	Cre11.g481115.t1.1	Cre11.g481115.t1.1		3457341,3459105,3459551,3460717,3461635,3462048	3458815,3459148,3459662,3460934,3461700,3463302	
chr11	3463465	3468556	3464165	3468484	-	Cre11.g481126.t1.1	Cre11.g481126.t1.1		3468376,3467979,3467509,3466542,3466255,3465029,3464703,3463465	3468556,3468097,3467568,3466662,3466302,3465145,3464816,3464228	May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	3463465	3468556	3464165	3468484	-	Cre11.g481126.t2.1	Cre11.g481126.t2.1		3468376,3467979,3467509,3466623,3466255,3465029,3464703,3463465	3468556,3468097,3467568,3466662,3466302,3465145,3464816,3464228	May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	3469041	3477430	3469672	3477036	-	Cre11.g481150.t1.1	Cre11.g481150.t1.1		3477176,3476899,3476122,3475583,3470978,3469041	3477430,3477091,3476680,3475870,3475325,3470736	
chr11	3477775	3486070	3479116	3486042	-	PFH6	Cre11.g481200.t1.2		3485993,3485818,3483409,3482860,3482454,3482035,3481626,3480880,3480684,3480260,3479945,3479553,3477775	3486070,3485900,3483548,3482956,3482536,3482122,3481666,3480962,3480745,3480355,3479995,3479705,3479287	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate; contains C-terminal ShK domain
chr11	3486135	3493073	3487426	3493040	-	Cre11.g481250.t1.2	Cre11.g481250.t1.2		3492778,3492296,3491204,3490467,3490126,3489538,3489078,3488809,3487934,3486135	3493073,3492360,3491320,3490587,3490207,3489592,3489140,3488905,3488079,3487564	
chr11	3486373	3493073	3487426	3493040	-	Cre11.g481250.t2.1	Cre11.g481250.t2.1		3492778,3492296,3491204,3490467,3490126,3489538,3489078,3488809,3487934,3486373	3493073,3492360,3491320,3490587,3490207,3489592,3489140,3488905,3488079,3487564	
chr11	3493171	3495772	3493887	3495574	+	Cre11.g481300.t1.1	Cre11.g481300.t1.1		3493171,3494343,3495574	3493920,3495282,3495772	
chr11	3495821	3500302	3496046	3499535	+	Cre11.g481313.t1.2	Cre11.g481313.t1.2		3495821,3498758	3498452,3500302	
chr11	3501402	3510150	3502149	3509124	-	Cre11.g481350.t1.1	Cre11.g481350.t1.1		3509874,3509084,3508928,3508655,3508395,3507480,3506878,3506206,3505677,3505261,3504928,3504512,3504062,3503673,3502732,3501402	3510150,3509126,3508987,3508744,3508433,3507547,3506947,3506341,3505781,3505445,3505003,3504564,3504196,3503790,3502858,3502167	
chr11	3510205	3520850	3510418	3519661	-	Cre11.g481375.t1.1	Cre11.g481375.t1.1		3520076,3519618,3519227,3516347,3515975,3515422,3515064,3514819,3514334,3513607,3513250,3512697,3512380,3511750,3511417,3511079,3510601,3510205	3520850,3519760,3519400,3519037,3516094,3515590,3515125,3514911,3514416,3513856,3513300,3512819,3512533,3511817,3511512,3511161,3510866,3510500	
chr11	3523975	3535242	3524633	3535023	-	Cre11.g481400.t1.1	Cre11.g481400.t1.1		3534447,3533165,3532747,3532500,3532209,3531838,3531275,3530755,3530232,3529823,3529320,3528843,3528487,3527890,3527369,3526761,3526370,3525957,3525468,3525157,3523975	3535242,3534190,3532833,3532540,3532281,3531948,3531382,3530844,3530459,3529903,3529414,3528894,3528611,3528010,3527424,3526863,3526495,3526002,3525565,3525207,3524825	
chr11	3536403	3537655	3536450	3537081	+	ATPG	Cre11.g481450.t1.2		3536403	3537655	ATP synthase CFo B' chain, chloroplast precursor; component of the stalk that connects CF1 to CFo; distant homolog of chloroplast-encoded subunit I
chr11	3538567	3545182	3539309	3545147	-	HIS7	Cre11.g481500.t1.2		3544937,3544244,3543841,3543311,3542967,3542607,3542028,3541664,3541288,3540845,3540552,3540236,3539832,3538567	3545182,3544369,3543901,3543489,3543008,3542698,3542103,3541743,3541339,3540919,3540683,3540346,3539927,3539429	glutamine amidotransferase/cyclase involved in histidine biosynthesis; imidazole glycerol phosphate synthase (IGPS).May contain additional coding sequence in intronic N-island PMID: 27175017
chr11	3545293	3554214	3545891	3553363	+	Cre11.g481550.t1.2	Cre11.g481550.t1.2		3545293,3546875,3547226,3547808,3548116,3548721,3549226,3549569,3549933,3550454,3550922,3552177,3552672,3553286	3545960,3546973,3547360,3547882,3548180,3548778,3549288,3549657,3550038,3550525,3551164,3552425,3553077,3554214	
chr11	3554838	3557651	3555404	3556948	+	GAS28	Cre11.g481600.t1.1		3554838,3555271,3556031	3555082,3555789,3557651	hydroxyproline-rich glycoprotein whose mRNA is up-regulated in gametes, in zygotes, by agglutination/cAMP treatment, by osmotic stress and by cell wall removal [PMID: 16183845]. Closely linked to GAS30. Independently sequenced: DQ017908.
chr11	3559721	3562762	3561728	3562662	-	Cre11.g481650.t1.2	Cre11.g481650.t1.2		3562629,3562416,3562286,3559721	3562762,3562543,3562343,3562073	
chr11	3562817	3570512	3563927	3570392	-	Cre11.g481700.t1.1	Cre11.g481700.t1.1		3570007,3568849,3568432,3567281,3565092,3562817	3570512,3569519,3568506,3568099,3567047,3564851	Splicing factor, with Suppressor-of-White-APricot (SWAP) domain
chr11	3562817	3570422	3563927	3569698	-	Cre11.g481700.t2.1	Cre11.g481700.t2.1		3569643,3568849,3568432,3567281,3565092,3562817	3570422,3569519,3568506,3568099,3567047,3564851	Splicing factor, with Suppressor-of-White-APricot (SWAP) domain
chr11	3571847	3575932	3572639	3575075	-	GAS30	Cre11.g481750.t1.2		3575345,3574687,3571847	3575932,3575147,3573670	Belongs to the large pherophorin-family, a family of extracellular matrix glycoproteins (cell wall glycoproteins) with a central hydroxyproline-rich (HR) domain. The mRNA is up-regulated in gametes, in zygotes, by agglutination/cAMP treatment, by osmotic stress and by cell wall removal [PMID: 16183845]. Closely linked to GAS28. Independently sequenced: DQ017907.
chr11	3576015	3581122	3576911	3580817	-	Cre11.g481800.t1.1	Cre11.g481800.t1.1		3580773,3580461,3580217,3580015,3579766,3579472,3579139,3578403,3577551,3576015	3581122,3580646,3580336,3580069,3579858,3579588,3579192,3578978,3578180,3577349	
chr11	3581253	3583724	3581904	3582798	+	Cre11.g481833.t1.1	Cre11.g481833.t1.1		3581253,3581880,3582230,3582599	3581693,3582078,3582522,3583724	
chr11	3583937	3594452	3584752	3593650	-	Cre11.g481866.t1.1	Cre11.g481866.t1.1		3594090,3593923,3593575,3593244,3592869,3592397,3591597,3591102,3590434,3589901,3589493,3589181,3588884,3588498,3588171,3587717,3587107,3586660,3586009,3585563,3583937	3594452,3593979,3593727,3593315,3593024,3592735,3592160,3591323,3590874,3590239,3589672,3589279,3588994,3588596,3588272,3587815,3587163,3586809,3586110,3585661,3585355	
chr11	3594631	3599982	3595220	3599686	-	Cre11.g481900.t1.2	Cre11.g481900.t1.2		3599470,3598729,3598178,3597734,3597445,3596932,3595930,3594631	3599982,3598869,3598492,3597874,3597537,3597117,3596685,3595481	
chr11	3600124	3602445	3600406	3601887	+	Cre11.g481951.t1.1	Cre11.g481951.t1.1		3600124,3601277,3601496	3600456,3601360,3602445	
chr11	3602520	3613202	3603151	3613112	-	FAP208	Cre11.g482001.t1.1		3613081,3612833,3612677,3612360,3611526,3611053,3610594,3610232,3609774,3608913,3608444,3607928,3607471,3607034,3606497,3606041,3605643,3605272,3604855,3604217,3603975,3603532,3602520	3613202,3612865,3612696,3612440,3612191,3611205,3610668,3610324,3609840,3609324,3608607,3608111,3607531,3607225,3606694,3606139,3605765,3605347,3605075,3604352,3604036,3603630,3603211	Flagellar Associated Protein, found in the flagellar proteome.  Possible phospholipase A2 or serine endopeptidase activity
chr11	3613257	3617422	3613836	3617157	-	Cre11.g482050.t1.2	Cre11.g482050.t1.2		3616464,3616216,3615630,3614919,3613257	3617422,3616287,3615758,3615359,3614601	
chr11	3617533	3625774	3618095	3625377	+	Cre11.g482101.t1.1	Cre11.g482101.t1.1		3617533,3618546,3619160,3619551,3620043,3620542,3621034,3621473,3621836,3622239,3622577,3623225,3623690,3624162,3624588	3618137,3618692,3619269,3619665,3620171,3620650,3621131,3621522,3621915,3622282,3622716,3623370,3623909,3624279,3625774	
chr11	3625807	3631692	3626242	3631430	-	Cre11.g482150.t1.2	Cre11.g482150.t1.2		3629816,3629326,3628590,3628128,3627428,3627115,3625807	3631692,3629676,3628949,3628196,3627721,3627171,3626830	
chr11	3631744	3635032	3632150	3634815	-	FAP299	Cre11.g482200.t1.2		3634753,3634522,3633813,3633222,3632726,3632426,3631744	3635032,3634611,3633960,3633305,3632884,3632479,3632267	Flagellar and Basal Body Protein 9; conserved protein found in ciliated organisms, human homolog is CFAP299; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr11	3635213	3638958	3635341	3638264	+	Cre11.g482250.t1.1	Cre11.g482250.t1.1		3635213,3635845,3636116,3636520,3636854,3637219,3637398,3637697,3637931,3638264	3635674,3635917,3636268,3636563,3636963,3637261,3637493,3637789,3638115,3638958	
chr11	3639503	3641074	3639872	3640694	+	Cre11.g482276.t1.1	Cre11.g482276.t1.1		3639503,3639997,3640345,3640646	3639931,3640039,3640365,3641074	
chr11	3642933	3647352	3643098	3646580	+	FAP305	Cre11.g482300.t1.2		3642933,3643227,3643392,3643989,3644336,3645304,3645910,3646502	3643169,3643325,3643668,3644092,3644714,3645420,3646068,3647352	identified by comparative genomics as being present only in organisms having motile (MOT) cilia; Similar to SPAG17
chr11	3647693	3648854	3647926	3648411	+	Cre11.g482351.t1.1	Cre11.g482351.t1.1		3647693,3648112	3647957,3648854	
chr11	3648899	3650352	3649016	3650093	-	Cre11.g482400.t1.2	Cre11.g482400.t1.2		3650062,3649615,3649302,3648899	3650352,3649892,3649448,3649133	
chr11	3651567	3655422	3652675	3655227	-	Cre11.g482450.t1.2	Cre11.g482450.t1.2		3655123,3654588,3654079,3653537,3651567	3655422,3654888,3654252,3653747,3653379	
chr11	3655973	3672343	3656167	3671975	+	Cre11.g482483.t1.1	Cre11.g482483.t1.1		3655973,3656449,3657027,3657546,3658090,3658530,3659496,3660257,3660833,3661188,3661485,3661834,3662283,3662836,3663328,3663809,3664169,3664521,3665090,3665352,3665796,3666247,3666799,3667373,3668051,3668543,3668948,3669365,3669853,3670253,3671380,3671867	3656296,3656602,3657118,3657795,3658182,3659185,3659605,3660386,3660922,3661232,3661529,3661951,3662355,3663092,3663463,3663935,3664279,3664618,3665124,3665432,3665905,3666456,3667210,3667424,3668205,3668637,3669082,3669475,3669948,3670414,3671499,3672343	
chr11	3655973	3672343	3656167	3671975	+	Cre11.g482483.t2.1	Cre11.g482483.t2.1		3655973,3656449,3657027,3657546,3658090,3658530,3659496,3660257,3660833,3661188,3661485,3661834,3662283,3662836,3663328,3663809,3664169,3664521,3665090,3665352,3665796,3666247,3666799,3667376,3668051,3668543,3668948,3669365,3669853,3670253,3671380,3671867	3656296,3656602,3657118,3657795,3658182,3659185,3659605,3660386,3660922,3661232,3661529,3661951,3662355,3663092,3663463,3663935,3664279,3664618,3665124,3665432,3665905,3666456,3667210,3667424,3668205,3668637,3669082,3669475,3669948,3670414,3671499,3672343	
chr11	3672697	3680282	3673591	3680089	-	Cre11.g482550.t1.1	Cre11.g482550.t1.1		3680038,3676157,3675486,3675006,3674349,3672697	3680282,3679941,3675772,3675288,3674736,3674002	
chr11	3680383	3683634	3680488	3682219	+	Cre11.g482600.t1.1	Cre11.g482600.t1.1		3680383,3680681,3682156	3680582,3680805,3683634	
chr11	3684707	3687208	3685100	3685848	+	Cre11.g482626.t1.2	Cre11.g482626.t1.2		3684707,3685283,3685485,3685794	3685206,3685358,3685548,3687208	
chr11	3687492	3690606	3688616	3689870	-	EZY3	Cre11.g482650.t1.1		3689841,3689324,3688944,3687492	3690606,3689655,3689076,3688683	Early zygote expressed of unknown function [PMID: 1848763]
chr11	3691087	3692848	3691632	3692677	+	Cre11.g482676.t1.1	Cre11.g482676.t1.1		3691087,3691430,3692471	3691219,3691702,3692848	
chr11	3692851	3696796	3693656	3696735	-	Cre11.g482700.t1.2	Cre11.g482700.t1.2		3696521,3696009,3695303,3694059,3692851	3696796,3696154,3695456,3694963,3693866	
chr11	3696897	3709048	3697057	3707493	+	Cre11.g482750.t1.2	Cre11.g482750.t1.2		3696897,3697698,3698178,3699199,3699755,3700668,3701444,3702221,3702704,3703011,3703389,3703809,3704311,3704698,3705195,3705914,3706373,3706807,3707224	3697314,3697914,3698254,3699511,3700332,3700880,3701744,3702292,3702759,3703104,3703451,3704106,3704471,3704796,3705458,3706092,3706537,3707039,3709048	
chr11	3696897	3709048	3697057	3707493	+	Cre11.g482750.t2.1	Cre11.g482750.t2.1		3696897,3697698,3698178,3699220,3699755,3700668,3701444,3702221,3702704,3703011,3703389,3703809,3704311,3704698,3705195,3705914,3706373,3706807,3707224	3697314,3697914,3698254,3699511,3700332,3700880,3701744,3702292,3702759,3703104,3703451,3704106,3704471,3704796,3705458,3706092,3706537,3707039,3709048	
chr11	3709061	3718076	3710506	3717872	-	Cre11.g482800.t1.1	Cre11.g482800.t1.1		3717548,3717067,3716466,3716119,3715856,3715510,3714719,3714037,3713652,3713285,3712893,3712520,3712046,3711723,3711360,3709061	3718076,3717215,3716639,3716161,3715930,3715665,3715255,3714586,3713742,3713315,3713027,3712700,3712215,3711747,3711384,3711017	Serine/Threonine Protein Kinase Homolog 5
chr11	3718161	3721046	3719392	3720952	-	Cre11.g482841.t1.1	Cre11.g482841.t1.1		3720754,3720264,3719744,3718161	3721046,3720674,3720127,3719476	
chr11	3721225	3726208	3721585	3725662	+	Cre11.g482850.t1.1	Cre11.g482850.t1.1		3721225,3721536,3721747,3721912,3722337,3722771,3723103,3723340,3723560,3723962,3724164,3724363,3724636,3724902,3725143,3725425	3721434,3721648,3721813,3722066,3722597,3722878,3723243,3723452,3723794,3724015,3724234,3724513,3724743,3724985,3725295,3726208	null-allele passenger mutation was isolated (PMID 29743196)
chr11	3726257	3730168	3726377	3729284	+	RAB20	Cre11.g482900.t1.1		3726257,3726499,3727035,3727522,3727962,3728586,3729185	3726407,3726592,3727116,3727574,3728083,3728714,3730168	Expressed Protein. Similar to the RABC/Rab18-type GTPases, one of 3 C-type Rabs
chr11	3730267	3741022	3730664	3739840	+	Cre11.g482952.t1.1	Cre11.g482952.t1.1		3730267,3731153,3731573,3732135,3732482,3732886,3733349,3736014,3736625,3737054,3737854	3730841,3731323,3731731,3732332,3732653,3733225,3735894,3736441,3736848,3737702,3741022	
chr11	3741031	3751106	3742821	3750463	-	Cre11.g483000.t1.1	Cre11.g483000.t1.1		3750349,3749873,3748949,3748622,3748417,3747933,3746315,3744800,3744226,3743889,3741031	3751106,3750002,3749030,3748868,3748492,3748115,3747748,3746139,3744681,3744101,3743748	
chr11	3757217	3762878	3757353	3762423	+	Cre11.g483033.t1.1	Cre11.g483033.t1.1		3757217,3757795,3759238,3762371	3757653,3759123,3762308,3762878	
chr11	3757217	3762878	3757353	3762108	+	Cre11.g483033.t2.1	Cre11.g483033.t2.1		3757217,3757795,3759238,3762058	3757653,3759123,3761974,3762878	
chr11	3762971	3770936	3764451	3770560	-	Cre11.g483100.t1.1	Cre11.g483100.t1.1		3770395,3770100,3769844,3769480,3769075,3768520,3767525,3766494,3765913,3765576,3762971	3770936,3770214,3769925,3769726,3769150,3768723,3768427,3767434,3766371,3765788,3765435	
chr11	3771456	3774326	3771803	3774299	-	Cre11.g483150.t1.2	Cre11.g483150.t1.2		3774263,3774051,3773866,3773563,3773234,3772967,3772562,3772278,3771456	3774326,3774137,3773957,3773672,3773330,3773069,3772817,3772351,3772058	
chr11	3771456	3774296	3771803	3773855	-	Cre11.g483150.t2.1	Cre11.g483150.t2.1		3774263,3774051,3773817,3773563,3773234,3772967,3772562,3772278,3771456	3774296,3774137,3773957,3773672,3773330,3773069,3772817,3772351,3772058	
chr11	3774427	3778629	3774766	3778051	+	Cre11.g483200.t1.2	Cre11.g483200.t1.2		3774427,3775449,3775861,3776019,3776299,3776849,3777083,3777457,3777949	3775210,3775517,3775899,3776073,3776632,3776939,3777163,3777663,3778629	
chr11	3779247	3784383	3779457	3783666	+	PHC45	Cre11.g483250.t1.1		3779247,3779724,3779935,3780284,3780522,3780775,3781043,3782612,3782814,3783235,3783498	3779521,3779760,3780117,3780384,3780616,3780914,3782176,3782690,3783045,3783365,3784383	
chr11	3784917	3786129	3785335	3785507	+	Cre11.g483301.t1.1	Cre11.g483301.t1.1		3784917,3785288	3785146,3786129	
chr11	3788767	3794267	3789022	3793677	+	PHC44	Cre11.g483351.t1.1		3788767,3789382,3789498,3789885,3790136,3790417,3790633,3792403,3792744,3793196,3793518	3789071,3789421,3789746,3789985,3790230,3790559,3792081,3792622,3793002,3793326,3794267	
chr11	3794387	3801990	3794592	3801595	+	ELG10	Cre11.g483400.t1.1		3794387,3794754,3795149,3795417,3795613,3796328,3796490,3796807,3796981,3797196,3799360,3799600,3799764,3800123,3800289,3800557,3800714,3800912,3801247,3801475	3794671,3794878,3795292,3795505,3795888,3796387,3796649,3796867,3797083,3797241,3799439,3799634,3799943,3800188,3800419,3800629,3800799,3801174,3801331,3801990	putative terminal arabinosyl transferase on HRGP,  GT47 family; contains EGF-like domain
chr11	3808159	3809876	3808405	3809339	-	Cre11.g483450.t1.1	Cre11.g483450.t1.1		3809538,3809044,3808877,3808710,3808543,3808159	3809876,3809439,3808929,3808762,3808595,3808428	
chr12	4266	5657	4325	5523	+	Cre12.g483476.t1.1	Cre12.g483476.t1.1		4266,4579,5523	4422,4731,5657	
chr12	5948	34335	6152	34225	-	Cre12.g483500.t1.1	Cre12.g483500.t1.1		34024,33514,33207,32878,32527,31926,31443,31006,30198,29897,29383,27860,26757,26242,25678,25339,25075,23838,21154,20193,19918,19639,19366,18881,18512,18276,18065,17793,17424,17047,16253,15846,15390,14172,13966,13788,13310,12647,12400,12133,11559,10820,10533,9789,9494,9104,8856,8387,8068,7542,7079,5948	34335,33615,33299,33044,32662,32343,31731,31363,30782,30025,29517,29222,27685,26556,26123,25497,25214,24952,23584,21042,20073,19780,19508,19255,18725,18362,18152,17959,17639,17328,16913,16112,15596,15065,14081,13884,13677,13199,12528,12308,12005,11087,10711,10373,9673,9275,8923,8728,8236,7913,7409,6957	null-allele mutant was isolated (PMID 29743196)
chr12	38026	43478	38092	41968	+	VPE1	Cre12.g483550.t1.2		38026,38397,38633,39053,39609,39998,40287,40505,40795	38192,38554,38754,39126,39818,40086,40395,40614,43478	A vacuole-targeted cysteine protease (clan CD of the C13 family) that has substrate specificity toward Asn and Asp residues (asparaginyl endopeptidase). Cr VPE is most closely related to vegetative-type plant VPEs (maize NP1); plant orthologues are involved in maturation of vacuolar proteins, and possibly in programmed cell death [PMID: 16043487]; the C-terminal propeptide of the Cr enzyme appears longer than in plants and not conserved there is a gap in the alignment with other VPE, near the C-terminus, but no exon arrangement appears to restore full alignment.
chr12	44596	49317	44679	49118	+	Cre12.g483600.t1.2	Cre12.g483600.t1.2		44596,44839,44994,45327,45636,46008,46339,47135,47597,48310,48564,48809	44724,44904,45174,45472,45806,46164,46978,47216,48125,48415,48645,49317	
chr12	49320	54505	50747	54180	-	Cre12.g483650.t1.2	Cre12.g483650.t1.2		54000,53626,53287,52913,52421,51880,51576,51064,49320	54505,53802,53387,53052,52602,51993,51693,51275,50900	
chr12	55946	61397	56037	58825	+	RB38	Cre12.g483700.t1.2		55946,56570,56830,57221,57524,57960,58191,58569,58754	56207,56655,57025,57306,57713,58045,58393,58629,61397	RNA-binding protein of 38 kDa, OSB/PTAC9 homolog; targeted to chloroplast, binds psbA 5' UTR; homology to DUF731 proteins of unknown function found in plants
chr12	55946	61637	56037	58825	+	RB38	Cre12.g483700.t2.1		55946,56570,56830,57221,57524,57960,58191,58569,58754	56207,56655,57025,57306,57713,58045,58393,58629,61637	RNA-binding protein of 38 kDa, OSB/PTAC9 homolog; targeted to chloroplast, binds psbA 5' UTR; homology to DUF731 proteins of unknown function found in plants
chr12	59656	63777	59744	62955	+	Cre12.g483720.t1.2	Cre12.g483720.t1.2		59656,60133,60953,62628,62890	60032,60733,61134,62688,63777	
chr12	64331	68465	65172	68227	-	Cre12.g483750.t1.2	Cre12.g483750.t1.2		68095,67604,67297,66869,66681,64331	68465,67669,67441,67001,66753,65289	
chr12	68906	83423	70092	83278	+	Cre12.g483800.t1.1	Cre12.g483800.t1.1		68906,69925,70663,71472,71682,72126,72514,72900,73090,73494,73759,74167,74610,75055,75376,75741,75983,76238,76598,77010,77314,77618,77995,78306,80429,80687,80869,81803,82135,83023	69692,70442,71293,71525,71840,72328,72670,72935,73344,73557,73970,74397,74762,75186,75456,75815,76126,76405,76690,77108,77421,77719,78156,80228,80539,80740,81615,81922,82842,83423	
chr12	84672	85365	84888	85315	-	Cre12.g483850.t1.2	Cre12.g483850.t1.2		85294,85162,84672	85365,85208,84997	
chr12	85466	90557	86044	89827	+	Cre12.g483900.t1.1	Cre12.g483900.t1.1		85466,85959,86574,86904,87258,87572,87791,88151,88547,88859,89146,89369,89723	85842,86401,86770,86969,87324,87641,87825,88311,88632,88875,89170,89419,90557	
chr12	85466	90557	86044	89827	+	Cre12.g483900.t2.1	Cre12.g483900.t2.1		85466,85959,86574,86904,87258,87572,87791,88151,88547,88859,89146,89723	85842,86401,86770,86969,87324,87641,87825,88311,88632,88875,89170,90557	
chr12	91130	92325	91878	92097	-	Cre12.g483926.t1.1	Cre12.g483926.t1.1		91971,91130	92325,91923	
chr12	92426	95047	92505	94485	+	MDY4	Cre12.g483950.t1.2		92426,92727,92930,93166,93649,93979,94363	92658,92825,93037,93453,93747,94135,95047	mitochondrial malate dehydrogenase, NAD-dependent
chr12	95055	99518	95752	99245	-	BCX1	Cre12.g484000.t1.2		99242,98004,97410,96778,96476,95055	99518,98804,97481,96948,96588,95960	Acetyl-CoA carboxylase beta-carboxyltransferase subunit of plastidic multimeric ACCase
chr12	99630	101165	100588	101114	-	RPL36	Cre12.g484050.t1.2		101024,100803,99630	101165,100937,100660	Cytosolic 60S large ribosomal subunit protein L36
chr12	101266	103507	101576	102717	+	RPC19	Cre12.g484100.t1.2		101266,102053,102586	101674,102129,103507	putative DNA-directed RNA polymerase subunit, common to RNA polymerases I and III; Rpc19
chr12	103510	108465	104651	108331	-	Cre12.g484150.t1.1	Cre12.g484150.t1.1		108286,108031,107911,107780,107514,106104,105240,103510	108465,108128,107946,107830,107718,107237,105600,104968	
chr12	103510	108465	104651	108331	-	Cre12.g484150.t2.1	Cre12.g484150.t2.1		108286,108031,107911,107780,107514,106104,105240,103510	108465,108128,107946,107830,107718,107237,105597,104968	
chr12	108576	112293	108702	111683	+	GGPS	Cre12.g484200.t1.2		108576,108806,108934,109111,109650,110124,110976,111449	108728,108857,109003,109222,109720,110359,111212,112293	polyprenyl synthetase (geranylgeranyl diphosphate synthase) (GGPPS); Low-CO2 inducible gene LCI14 revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr12	113076	133587	113194	132859	+	DHC1	Cre12.g484250.t1.1		113076,113407,113573,114510,114808,115543,115921,116356,116733,117115,117459,118453,118760,119913,120242,120593,121093,121670,122337,123071,123934,124422,124917,126399,126743,127269,127821,129537,130809	113321,113488,114236,114602,115311,115759,116189,116550,116904,117287,118235,118641,119712,120066,120436,120787,121476,122072,122815,123750,124152,124747,126075,126603,127060,127682,129213,130428,133587	Flagellar inner arm dynein 1 heavy chain alpha (dynein heavy chain 1, dynein fa; one heavy chain of a two-headed type dynein; other chain is DHC1, dynein fb) (subspecies f)(DHC1-alpha)(Pf9); DHC1 in PMID: 9247642; identified in Chlamydomonas flagella in; null-allele mutant was isolated (PMID 29743196)
chr12	133746	135081	133790	134613	+	Cre12.g484300.t1.2	Cre12.g484300.t1.2		133746,134000,134394,134606	133907,134085,134471,135081	
chr12	135328	143416	136948	143188	-	Cre12.g484350.t1.1	Cre12.g484350.t1.1		143137,142934,142704,141946,141409,140676,140301,138005,137626,135328	143416,143037,142841,142456,141543,140915,140372,138211,137811,137356	
chr12	145736	146337	145981	146168	+	Cre12.g484375.t1.1	Cre12.g484375.t1.1		145736	146337	
chr12	145736	150807	146156	149447	+	Cre12.g484400.t1.1	Cre12.g484400.t1.1		145736,146483,146929,147329,147653,148030,148602,148939,149299	146358,146567,147082,147369,147684,148129,148790,149013,150807	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr12	151086	155997	151896	155368	+	Cre12.g484450.t1.1	Cre12.g484450.t1.1		151086,151869,154495,154757,155104	151728,154374,154578,154837,155997	
chr12	156056	158387	156128	157916	+	Cre12.g484500.t1.2	Cre12.g484500.t1.2		156056,156377,156760,157235,157428,157739	156273,156441,156828,157284,157473,158387	
chr12	158466	161747	158505	160628	+	Cre12.g484550.t1.2	Cre12.g484550.t1.2		158466,159000,159217,159658,160116,160487	158841,159068,159365,159837,160212,161747	
chr12	161780	165055	162185	164929	-	DMC6	Cre12.g484600.t1.2		164479,164183,163682,161780	165055,164317,163854,163479	A putative DNA methyltransferase similar to the mammalian DNMT2 methyltransferases, ChromDB DMT345.  Possibly a tRNA (cytosine-5)-methyltransferase.
chr12	165616	171937	165870	170739	+	Cre12.g484650.t1.1	Cre12.g484650.t1.1		165616,166021,166238,166605,166987,167377,167681,168020,170595	165941,166078,166307,166780,167109,167527,167785,169920,171937	
chr12	172169	174425	172599	174346	-	Cre12.g484700.t1.2	Cre12.g484700.t1.2		174212,173917,173299,172971,172169	174425,173984,173372,173003,172647	
chr12	174526	181397	174705	180949	+	Cre12.g484750.t1.1	Cre12.g484750.t1.1		174526,175499,175933,176440,178146,178445,178936,179205,179550,179948,180287	175140,175535,176146,176607,178250,178547,179002,179257,179608,179973,181397	
chr12	199888	208329	200374	207968	-	Cre12.g484800.t1.1	Cre12.g484800.t1.1		207872,207719,207298,206998,206646,206226,205948,205153,204840,203861,203625,203277,203014,202767,202611,202080,201763,201312,200936,199888	208329,207803,207452,207086,206733,206310,206076,205782,204896,204627,203707,203456,203043,202833,202617,202135,201827,201510,200977,200761	
chr12	209380	212831	209408	212732	+	Cre12.g484834.t1.1	Cre12.g484834.t1.1		209380,211910	211637,212831	
chr12	209380	211971	209408	211910	+	Cre12.g484834.t2.1	Cre12.g484834.t2.1		209380,211751	211637,211971	
chr12	213024	217059	214466	216833	-	FAP83	Cre12.g484900.t1.2		216779,216444,216023,215736,213024	217059,216596,216280,215872,215508	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr12	217560	220161	217844	219374	+	Cre12.g484950.t1.1	Cre12.g484950.t1.1		217560,217990,218447	217855,218287,220161	
chr12	220168	222503	220493	222389	-	FAP182	Cre12.g485000.t1.1		222380,222186,221858,220168	222503,222249,221991,221702	Flagellar Associated Protein, found in the flagellar proteome
chr12	222630	225512	222924	224154	+	CAH6	Cre12.g485050.t1.2		222630,223003,223266,223861	222927,223095,223671,225512	Chloroplast stroma carbonic anhydrase
chr12	225570	226531	225693	226285	+	FAP326	Cre12.g485100.t1.2		225570	226531	
chr12	226538	229749	227249	229643	-	GAP1	Cre12.g485150.t1.2		229522,229171,228701,228329,227916,226538	229749,229381,228782,228496,228086,227612	Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12), organelle targeting sequence, but not clear whether mitochondrial or plastid; nearly identical to cytosolic G3PC_CHLRE [Genbank P49644; PMID: 8114942], except predicted to have N-terminal extension and lacking met residue at 1" position of G3PC_CHLRE; entry G3PC_CHLRE was generated by a different splice that introduced a new "ATG" at the position equivalent to AA "1" of G3PC_CHLRE; two splice variants; splicing variant GAP1b would produce a cytosolic form of this protein
chr12	232024	233568	232141	233054	+	Cre12.g485200.t1.1	Cre12.g485200.t1.1		232024,232498	232218,233568	
chr12	235220	240680	235550	238334	+	CSV5	Cre12.g485250.t1.1		235220,235753,235984,236336	235608,235863,236156,240680	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr12	240750	241801	240798	241687	+	Cre12.g485276.t1.1	Cre12.g485276.t1.1		240750,241225	240966,241801	
chr12	242574	248419	242973	247917	-	CSV6	Cre12.g485300.t1.1		247865,247573,247168,246791,244912,242574	248419,247665,247397,247039,246510,244809	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr12	248849	254089	249790	253384	-	Cre12.g485350.t1.2	Cre12.g485350.t1.2		253251,253024,252534,251887,251532,251021,250780,250357,248849	254089,253050,252763,252317,251631,251284,250863,250467,250075	
chr12	248849	254089	249790	253384	-	Cre12.g485350.t2.1	Cre12.g485350.t2.1		253251,252534,251887,251532,251021,250780,250357,248849	254089,252763,252317,251631,251284,250863,250467,250075	
chr12	254546	260459	255873	260435	-	Cre12.g485400.t1.1	Cre12.g485400.t1.1		260414,259507,259013,258707,258195,257867,256780,254546	260459,259614,259120,258787,258410,257970,257602,255975	
chr12	260560	266164	260610	264184	+	Cre12.g485418.t1.1	Cre12.g485418.t1.1		260560,260891,261169,262285,262780,262958,263194,263480,264003,264170	260742,261068,262095,262455,262892,263033,263370,263731,264086,266164	
chr12	267620	270831	267658	269393	+	Cre12.g485438.t1.1	Cre12.g485438.t1.1		267620,268452,269186	268254,269037,270831	
chr12	270884	271929	270931	271626	-	Cre12.g485458.t1.1	Cre12.g485458.t1.1		271521,271124,270884	271929,271210,270982	
chr12	275533	279405	276505	278986	-	Cre12.g485478.t1.1	Cre12.g485478.t1.1		278975,278302,277466,276630,275533	279405,278440,278071,277241,276505	
chr12	279619	287139	280472	286702	-	Cre12.g485500.t1.1	Cre12.g485500.t1.1		286916,286507,285963,285587,285257,284870,284146,283820,283055,282733,281105,280516,279619	287139,286705,286212,285772,285378,285010,284675,283961,283673,282879,282585,280993,280472	
chr12	287194	291461	288223	291343	-	Cre12.g485550.t1.2	Cre12.g485550.t1.2		291154,290601,290277,289858,289600,289143,288606,287194	291461,290660,290402,289967,289653,289242,288851,288427	
chr12	291590	300070	292349	297267	+	Cre12.g485600.t1.2	Cre12.g485600.t1.2		291590,293155,293598,293920,294426,294829,295194,295426,295827,296250,296994	292624,293200,293678,294036,294477,294889,295262,295591,296036,296747,300070	
chr12	300314	302179	300828	301151	-	CSB41	Cre12.g485632.t1.2		301661,301067,300314	302179,301168,300951	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	1688731	1691134	1689105	1690968	-	CGL128	Cre12.g485750.t1.1		1690856,1690645,1690266,1689815,1688731	1691134,1690759,1690407,1690006,1689276	
chr12	1683525	1688680	1684855	1688332	-	FTSH1	Cre12.g485800.t1.2		1688182,1687231,1686885,1686212,1685682,1683525	1688680,1687869,1686989,1686713,1685854,1685470	FtsH protease 1, type A; chloroplast-targeted; membrane-bound metalloprotease (M41) with AAA domain; ortholog of Arabidopsis FtsH1=Var1 and FtsH5
chr12	1680960	1683355	1681039	1682899	+	CPLD64	Cre12.g485850.t1.2		1680960,1681199,1681343,1681545,1682178,1682755	1681107,1681256,1681417,1681698,1682239,1683355	
chr12	1678241	1680902	1678344	1680462	+	Cre12.g485900.t1.2	Cre12.g485900.t1.2		1678241,1678759,1679144,1679539,1680150	1678575,1678842,1679365,1679832,1680902	
chr12	1671655	1678140	1672608	1678007	-	Cre12.g485950.t1.2	Cre12.g485950.t1.2		1677934,1677430,1676442,1676109,1675778,1675439,1675073,1674621,1674165,1673861,1673418,1673086,1671655	1678140,1677596,1677271,1676178,1675862,1675536,1675164,1674716,1674294,1673980,1673494,1673199,1672882	
chr12	1666881	1671641	1667106	1670744	+	Cre12.g486000.t1.2	Cre12.g486000.t1.2		1666881,1667890,1668220	1667720,1668060,1671641	
chr12	1663381	1666062	1663605	1665265	+	Cre12.g486050.t1.2	Cre12.g486050.t1.2		1663381,1664219,1664853,1665134	1663674,1664392,1664961,1666062	
chr12	1659998	1663245	1660414	1663148	-	CLPP5	Cre12.g486100.t1.2		1663029,1662643,1662238,1660828,1659998	1663245,1662757,1662376,1661069,1660570	
chr12	1629551	1632216	1630221	1631411	+	Cre12.g486207.t1.2	Cre12.g486207.t1.2		1629551,1630166,1630595,1630833,1631306	1629955,1630300,1630617,1630922,1632216	
chr12	1632339	1635520	1633351	1635378	-	Cre12.g486208.t1.1	Cre12.g486208.t1.1		1635291,1634643,1633959,1632339	1635520,1635182,1634153,1633651	
chr12	1635651	1659910	1636175	1659557	-	Cre12.g486209.t1.1	Cre12.g486209.t1.1		1659287,1658980,1658502,1658117,1657660,1656974,1656487,1655998,1655341,1654877,1654080,1653566,1652998,1652457,1651619,1651047,1650472,1649985,1648914,1648153,1647630,1647167,1646608,1646186,1645591,1644993,1644731,1644231,1643802,1643414,1642546,1641894,1641139,1640425,1639950,1639329,1638985,1638535,1638201,1637660,1637258,1636555,1635651	1659910,1659101,1658602,1658211,1657861,1657130,1656625,1656117,1655727,1655116,1654251,1653654,1653378,1652767,1652257,1651207,1650557,1650269,1649135,1648777,1647859,1647336,1646768,1646372,1645666,1645150,1644779,1644337,1644021,1643523,1643011,1642199,1641569,1640944,1640207,1639514,1639056,1638734,1638282,1637983,1637368,1636779,1636346	
chr12	1622345	1625366	1624055	1625211	-	FAP333	Cre12.g486250.t1.2		1625145,1625000,1624871,1624687,1624465,1622345	1625366,1625081,1624941,1624806,1624583,1624143	Similar to Arf1 ADP-ribosylation factor 1; member of the ARF-type of small GTPases, identical in sequence to ARL7 on scaffold 25, but this one is on chr12
chr12	1627585	1629410	1628127	1629053	-	Cre12.g486252.t1.1	Cre12.g486252.t1.1		1629299,1628859,1628324,1627585	1629410,1629078,1628693,1628220	
chr12	1620271	1622341	1620411	1621866	+	PSAL	Cre12.g486300.t1.2		1620271,1620629,1620873,1621252,1621772	1620528,1620743,1620946,1621442,1622341	Chloroplast precursor; subunit XI
chr12	1606131	1619122	1606876	1616339	+	Cre12.g486350.t1.1	Cre12.g486350.t1.1		1606131,1606495,1606851,1610791,1611177,1611631,1612087,1612747,1613249,1613599,1613949,1614518,1615139	1606406,1606652,1610245,1610937,1611362,1611711,1612293,1612884,1613365,1613733,1614253,1614836,1619122	Serine/Threonine Protein Kinase Homolog 3, putative
chr12	1599906	1605090	1600397	1604573	-	Cre12.g486400.t1.2	Cre12.g486400.t1.2		1604526,1604304,1603885,1603377,1602865,1602536,1602017,1601655,1601348,1601118,1599906	1605090,1604406,1604181,1603477,1602982,1602636,1602137,1601785,1601435,1601198,1600592	
chr12	1594521	1598342	1594733	1597448	+	Cre12.g486450.t1.2	Cre12.g486450.t1.2		1594521,1594995,1595842,1596159,1596974,1597400	1594866,1595134,1596031,1596320,1597149,1598342	
chr12	1592075	1593220	1592959	1593167	-	Cre12.g486478.t1.2	Cre12.g486478.t1.2		1592075	1593220	
chr12	1593321	1594472	1593348	1594319	+	Cre12.g486481.t1.1	Cre12.g486481.t1.1		1593321,1593700,1594307	1593372,1593903,1594472	
chr12	1582791	1588260	1582901	1587053	+	Cre12.g486550.t1.2	Cre12.g486550.t1.2		1582791,1583173,1583379,1583567,1583894,1584118,1584704,1585081,1585889,1586469,1586825	1583051,1583294,1583469,1583647,1583989,1584378,1584805,1585215,1586195,1586611,1588260	
chr12	1588391	1592072	1588500	1591742	+	PHX19	Cre12.g486551.t1.1		1588391,1588909,1589094,1589413,1589778,1590010,1590322,1590958	1588686,1588998,1589227,1589500,1589838,1590110,1590827,1592072	Prolyl hydroxylase, possibly a prolyl-3-hydroxylase related to LEPRE1, a leucine proline-enriched proteoglycan (leprecan) 1 gene, mutations in which are implicated in osteogenesis imperfecta
chr12	1579075	1582660	1579852	1582577	-	MEX1	Cre12.g486600.t1.2		1582382,1582033,1581861,1581338,1581008,1580665,1580183,1579075	1582660,1582111,1581961,1581529,1581097,1580763,1580382,1579976	conserved expressed protein related to maltose exporter; maltose excess protein MEX
chr12	1568655	1578630	1569891	1578531	-	Cre12.g486650.t1.2	Cre12.g486650.t1.2		1578419,1578244,1577459,1577212,1576931,1576627,1576285,1575275,1574408,1574011,1573394,1572672,1572372,1571905,1571478,1570782,1570357,1568655	1578630,1578305,1577703,1577273,1577081,1576738,1576379,1576127,1575136,1574168,1573616,1573205,1572476,1572147,1571681,1571201,1570545,1570092	
chr12	1563565	1567050	1564201	1566749	-	FAP271	Cre12.g486700.t2.1		1566549,1565856,1565445,1564863,1564532,1563565	1567050,1566069,1565648,1565146,1564690,1564295	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr12	1563531	1566931	1564201	1566749	-	FAP271	Cre12.g486700.t1.2		1566549,1565856,1565445,1564863,1564532,1563531	1566931,1566069,1565648,1565146,1564690,1564295	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr12	1567301	1568642	1568039	1568247	+	Cre12.g486702.t1.1	Cre12.g486702.t1.1		1567301	1568642	
chr12	1561821	1563509	1562290	1563065	+	Cre12.g486750.t1.2	Cre12.g486750.t1.2		1561821,1562073,1562192	1561941,1562120,1563509	
chr12	1558605	1561630	1560221	1561252	-	Cre12.g486800.t1.2	Cre12.g486800.t1.2		1561108,1560765,1560530,1558605	1561630,1560829,1560650,1560257	
chr12	1555301	1558542	1555341	1558383	+	Cre12.g486850.t1.1	Cre12.g486850.t1.1		1555301,1556126,1556395,1556550,1556862,1557044,1557398,1557813	1555833,1556246,1556459,1556705,1556918,1557223,1557655,1558542	
chr12	1552291	1555252	1552326	1555111	+	Cre12.g486851.t1.2	Cre12.g486851.t1.2		1552291,1552594,1552911,1553270,1553697,1553965,1554310,1554563,1555060	1552500,1552733,1553072,1553474,1553875,1554072,1554442,1554835,1555252	
chr12	1547381	1552200	1548103	1551562	+	Cre12.g486900.t1.2	Cre12.g486900.t1.2		1547381,1548416,1548774,1549029,1549794,1550167,1550582,1551026,1551412	1548145,1548516,1548843,1549190,1549925,1550379,1550770,1551133,1552200	
chr12	1539681	1547196	1540031	1545283	+	CSV7	Cre12.g486950.t1.1		1539681,1540348,1541031,1541344	1540134,1540623,1541152,1547196	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr12	1533361	1539161	1533632	1537752	+	CSV8	Cre12.g487000.t1.1		1533361,1533894,1534411,1534856,1535248,1535564,1535759	1533753,1534015,1534638,1535014,1535312,1535590,1539161	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr12	1527921	1532852	1528016	1531764	+	Cre12.g487050.t1.1	Cre12.g487050.t1.1		1527921,1528321,1528810,1529502	1528200,1528430,1529277,1532852	
chr12	1515311	1523134	1515524	1521957	+	TSM2	Cre12.g487100.t1.2		1515311,1516084,1516373,1516805,1517092,1517505,1517892,1518091,1518369,1518799,1519385,1519711,1520252,1520593,1521282,1521711	1515816,1516142,1516468,1516852,1517241,1517591,1517926,1518151,1518492,1518961,1519463,1519775,1520388,1520765,1521431,1523134	
chr12	1523191	1527872	1523501	1526680	+	CSV9	Cre12.g487101.t1.1		1523191,1523629,1523977,1524646	1523523,1523720,1524378,1527872	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown; null-allele passenger mutation was isolated (PMID 29743196)
chr12	1512985	1515180	1513378	1515112	-	PGM20	Cre12.g487150.t1.1		1515031,1514816,1514454,1514218,1513981,1513729,1512985	1515180,1514893,1514587,1514269,1514069,1513814,1513581	
chr12	1509118	1512976	1509239	1512496	+	Cre12.g487200.t1.1	Cre12.g487200.t1.1		1509118,1509558,1509866,1510335,1510866,1511943,1512277	1509342,1509680,1510081,1510645,1511004,1512076,1512976	
chr12	1505898	1509010	1506916	1508837	-	Cre12.g487250.t1.2	Cre12.g487250.t1.2		1508754,1508527,1508290,1508019,1507447,1505898	1509010,1508617,1508464,1508152,1507685,1507109	
chr12	1501583	1505850	1502251	1505552	-	CSB42	Cre12.g487300.t1.2		1505503,1504761,1502719,1502490,1501583	1505850,1505326,1504620,1502600,1502374	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	1497027	1501164	1497896	1500856	-	CEP19	Cre12.g487350.t1.2		1500817,1500602,1500427,1499724,1499154,1498825,1498364,1497027	1501164,1500655,1500480,1500123,1499410,1498887,1498477,1498115	null-allele mutant was isolated (PMID 29743196); RABL2-binding protein
chr12	1491745	1494940	1491886	1494229	+	Cre12.g487400.t1.2	Cre12.g487400.t1.2		1491745,1491971,1492121,1492479,1493017,1493436,1493670,1494127	1491901,1492032,1492275,1492582,1493130,1493495,1493843,1494940	
chr12	1495255	1496826	1496037	1496609	+	CSB43	Cre12.g487402.t1.1		1495255,1496251,1496477	1496049,1496361,1496826	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	1488356	1491614	1489137	1491325	-	Cre12.g487450.t1.1	Cre12.g487450.t1.1		1491256,1491094,1490854,1490577,1490396,1489991,1489670,1489424,1488356	1491614,1491144,1490940,1490664,1490478,1490194,1489807,1489489,1489242	
chr12	1484592	1488224	1485286	1488098	-	NYE1	Cre12.g487500.t1.1		1487906,1487493,1487121,1484592	1488224,1487840,1487219,1486516	Conserved expressed protein of unknown function; low similarity to senescence-inducible chloroplast stay-green protein 1 [Lycopersicon esculentum] - in Arabidopsis the analogous sequence is gi 58866297 gb AAW82962.1
chr12	1472235	1480836	1472475	1480470	+	Cre12.g487600.t1.1	Cre12.g487600.t1.1		1472235,1472891,1473596,1474207,1474610,1474903,1475424,1475877,1476212,1476544,1477118,1477502,1478017,1478377,1478738,1479371,1479818,1480264	1472624,1473059,1473903,1474334,1474721,1474999,1475516,1475984,1476392,1476770,1477309,1477594,1478219,1478476,1478807,1479540,1479998,1480836	(CPSF subunit 2); involved in maturation of 3' end of mRNA; contains an RNA-metabolising metallo-beta-lactamase domain
chr12	1480905	1484586	1480994	1484317	+	Cre12.g487601.t1.1	Cre12.g487601.t1.1		1480905,1481262,1482029,1482481,1483210,1483481,1483903	1481186,1481856,1482213,1482963,1483272,1483744,1484586	
chr12	1462555	1470346	1463041	1469879	+	Cre12.g487650.t1.1	Cre12.g487650.t1.1		1462555,1463647,1463903,1464190,1466411	1463464,1463691,1463959,1466238,1470346	
chr12	1470545	1472045	1470811	1471332	+	Cre12.g487652.t1.1	Cre12.g487652.t1.1		1470545,1471258	1470947,1472045	
chr12	1452619	1459380	1453110	1458636	-	Cre12.g487700.t1.2	Cre12.g487700.t1.2		1459232,1458450,1458109,1457683,1457396,1456951,1456593,1456238,1455929,1455633,1455296,1454950,1454680,1454328,1454038,1453750,1453442,1452619	1459380,1458737,1458219,1457820,1457504,1457049,1456793,1456431,1456054,1455722,1455415,1455125,1454803,1454417,1454193,1453850,1453521,1453235	
chr12	1450755	1452546	1450817	1452073	+	Cre12.g487750.t1.2	Cre12.g487750.t1.2		1450755,1452073	1451601,1452546	
chr12	1439955	1444866	1440160	1444712	+	Cre12.g487800.t1.1	Cre12.g487800.t1.1		1439955,1440343,1440570,1440921,1441795	1440232,1440417,1440730,1441637,1444866	
chr12	1437362	1439854	1437897	1439608	-	CGL49	Cre12.g487850.t1.2		1439460,1438782,1437362	1439854,1438969,1438122	Conserved in the Green Lineage
chr12	1435519	1437314	1435890	1436722	-	FDX9	Cre12.g487900.t1.2		1436694,1436416,1436177,1435519	1437314,1436504,1436272,1435983	
chr12	1419385	1435516	1419480	1433698	+	Cre12.g487950.t1.1	Cre12.g487950.t1.1		1419385,1419866,1420047,1420265,1420448,1420758,1421107,1421457,1421762,1422203,1422425,1422724,1423012,1423404,1423980,1424258,1424595,1424888,1425214,1425493,1425872,1426195,1426671,1427140,1427406,1427779,1428066,1428403,1428962,1429195,1429810,1430201,1430636,1431443,1431679,1432075,1432537,1433616	1419592,1419957,1420152,1420339,1420567,1420891,1421220,1421571,1421966,1422268,1422586,1422871,1423202,1423831,1424135,1424410,1424723,1425043,1425280,1425655,1425983,1426417,1426961,1427203,1427611,1427915,1428255,1428699,1429043,1429686,1429998,1430479,1431280,1431577,1431919,1432367,1433510,1435516	
chr12	1414012	1419219	1414236	1417930	+	FFT4	Cre12.g488000.t1.2		1414012,1414432,1414747,1414917,1415418,1415572,1415791,1416075,1416456,1416732,1416910,1417312	1414333,1414471,1414794,1415140,1415450,1415677,1415894,1416283,1416605,1416776,1417161,1419219	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase
chr12	1407979	1413874	1408565	1413583	-	FFT5	Cre12.g488050.t1.2		1413525,1413385,1413015,1412738,1412455,1412249,1411382,1410375,1410080,1409701,1407979	1413874,1413424,1413211,1412842,1412587,1412325,1412085,1411112,1410181,1409883,1409534	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase
chr12	1404855	1407972	1405112	1407400	+	UPF3	Cre12.g488100.t1.2		1404855,1405380,1405592,1405779,1406818	1405252,1405481,1405692,1406692,1407972	putative ortholog of Saccharomyces cerevisiae Upf3 and Caenorhabditis elegans SMG-4; interacts with UPF2
chr12	1394079	1402164	1394097	1401373	-	Cre12.g488150.t1.1	Cre12.g488150.t1.1		1401145,1400724,1400349,1399903,1399662,1399170,1398594,1396016,1394416,1394079	1402164,1400792,1400531,1399959,1399742,1399474,1399020,1398474,1395882,1394097	
chr12	1403005	1404796	1403515	1403789	+	Cre12.g488152.t1.1	Cre12.g488152.t1.1		1403005	1404796	
chr12	1387219	1394024	1388050	1394020	-	Cre12.g488173.t1.2	Cre12.g488173.t1.2		1394000,1393657,1393395,1393045,1392315,1392124,1391772,1391542,1387219	1394024,1393804,1393451,1393116,1392786,1392187,1391958,1391625,1391422	
chr12	1382589	1387164	1382991	1386637	-	Cre12.g488200.t1.1	Cre12.g488200.t1.1		1386942,1386776,1386511,1386231,1386001,1385566,1385363,1385013,1384748,1382589	1387164,1386873,1386670,1386287,1386072,1385863,1385441,1385208,1384825,1384614	
chr12	1378925	1382586	1379115	1382063	+	Cre12.g488250.t1.2	Cre12.g488250.t1.2		1378925,1379231,1379468,1379849,1380112,1380525,1381883	1379170,1379342,1379519,1379929,1380237,1381595,1382586	
chr12	1365949	1370890	1366053	1369912	+	Cre12.g488350.t1.1	Cre12.g488350.t1.1		1365949,1366224,1366556,1366802,1367031,1367315,1367674,1368191,1368438,1368710,1368961,1369232	1366126,1366391,1366632,1366864,1367159,1367461,1368015,1368292,1368540,1368792,1369051,1370890	
chr12	1371019	1378644	1371573	1377663	-	Cre12.g488351.t1.1	Cre12.g488351.t1.1		1377929,1377656,1377332,1377094,1376826,1376538,1376164,1375932,1375647,1375257,1374851,1374493,1374296,1374057,1373857,1373700,1371019	1378644,1377718,1377433,1377150,1376871,1376689,1376358,1376029,1375770,1375472,1375054,1374717,1374337,1374185,1373904,1373729,1371713	
chr12	1361919	1365804	1362345	1365615	-	Cre12.g488400.t1.1	Cre12.g488400.t1.1		1365387,1364420,1364177,1363964,1363784,1363585,1363139,1362815,1361919	1365804,1365195,1364233,1364027,1363863,1363663,1363411,1362980,1362611	
chr12	1359264	1361787	1359732	1361619	-	VSP3	Cre12.g488450.t1.1		1361516,1361295,1361056,1359264	1361787,1361371,1361177,1360855	Extracellular matrix protein (vegetative cell wall protein) similar to ISG (Volvox carteri) [PMID: 1600938], both are glycoproteins with a hydroxyproline-rich (HR) domain. [PMID: 8000007]; contains Glucan-b1,3-glucosidase domain
chr12	1354239	1359054	1354677	1358830	-	ARC6	Cre12.g488500.t1.2		1358314,1357813,1357466,1357216,1356881,1356231,1355923,1355039,1354239	1359054,1358121,1357602,1357330,1357006,1356704,1356090,1355770,1354830	ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); heat shock protein binding / unfolded protein binding -COG484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
chr12	1348488	1354236	1349005	1353739	+	Cre12.g488550.t1.2	Cre12.g488550.t1.2		1348488,1348934,1349289,1349678,1349936,1350152,1350874,1351351,1351772,1352021,1352329,1352618,1352770,1353033,1353344,1353628	1348711,1349098,1349394,1349738,1349990,1350280,1351079,1351556,1351863,1352117,1352489,1352668,1352870,1353154,1353417,1354236	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr12	1344224	1347984	1344398	1347656	-	Cre12.g488600.t1.1	Cre12.g488600.t1.1		1347543,1347335,1346684,1346407,1346119,1345745,1345456,1345228,1344935,1344224	1347984,1347413,1347194,1346462,1346227,1345882,1345606,1345339,1344988,1344620	
chr12	1324915	1333991	1325033	1333494	+	Cre12.g488750.t1.2	Cre12.g488750.t1.2		1324915,1325553,1325847,1326101,1326283,1326549,1326717,1327550,1329782,1330020	1325327,1325606,1325921,1326178,1326406,1326629,1327374,1329547,1329869,1333991	
chr12	1334069	1343984	1335144	1343628	-	Cre12.g488752.t1.1	Cre12.g488752.t1.1		1343765,1343563,1343337,1342723,1342345,1342113,1341915,1338996,1335594,1334069	1343984,1343644,1343394,1343190,1342462,1342150,1341986,1341775,1338861,1335423	
chr12	1318155	1324706	1318296	1322640	+	Cre12.g488800.t1.1	Cre12.g488800.t1.1		1318155,1318395,1318766,1319089,1319418,1319825,1320118,1320324,1321109,1321756,1321993,1322340	1318311,1318642,1318977,1319173,1319619,1320001,1320210,1320947,1321612,1321848,1322193,1324706	
chr12	1307994	1315389	1308833	1315247	-	AP2A1	Cre12.g488850.t1.1		1315102,1314840,1314615,1314378,1314024,1313772,1313495,1313140,1312751,1312330,1311880,1311492,1311223,1310068,1309471,1307994	1315389,1314997,1314714,1314430,1314231,1313887,1313591,1313339,1312864,1312473,1312080,1311644,1311336,1311027,1309815,1309214	Hypothetical Conserved Protein. Alpha-Adaptin. Clathrin Adaptor Complex Large Subunit, putative member of AP-2 complex
chr12	1307994	1315389	1308833	1315247	-	AP2A1	Cre12.g488850.t2.1		1315102,1314840,1314615,1314378,1314024,1313772,1313495,1313140,1312751,1312330,1311880,1311492,1311223,1310068,1309471,1307994	1315389,1314997,1314714,1314430,1314231,1313887,1313591,1313339,1312864,1312473,1312080,1311644,1311336,1311024,1309815,1309214	Hypothetical Conserved Protein. Alpha-Adaptin. Clathrin Adaptor Complex Large Subunit, putative member of AP-2 complex
chr12	1292794	1297629	1293672	1296959	-	Cre12.g489000.t1.1	Cre12.g489000.t1.1		1296755,1293917,1292794	1297629,1296587,1293740	
chr12	1297820	1301620	1298389	1301190	+	Cre12.g489001.t1.1	Cre12.g489001.t1.1		1297820,1298357,1299104,1299243,1299431,1300225,1300456	1298082,1298994,1299143,1299345,1299501,1300375,1301620	
chr12	1302472	1307919	1303645	1307845	-	Cre12.g489002.t1.1	Cre12.g489002.t1.1		1306704,1306515,1305703,1305335,1305095,1304901,1304582,1304328,1302472	1307919,1306604,1306415,1305612,1305272,1305020,1304821,1304450,1304236	
chr12	1289130	1292759	1289166	1291634	+	PCT2	Cre12.g489050.t1.2		1289130,1290028,1290454,1291090,1291454	1289725,1290095,1290714,1291161,1292759	Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase)
chr12	1279250	1285364	1279401	1283479	+	SHD1	Cre12.g489150.t1.2		1279250,1279820,1280126,1280401,1280614,1281418,1282418,1282899,1283278	1279474,1280030,1280291,1280466,1281246,1282296,1282735,1283111,1285364	SH2-domain protein, SH2 domains bind phosphotyrosine residues and function in protein tyrosine kinase signalling (PMID: 15680235)
chr12	1286634	1287979	1286884	1287274	-	Cre12.g489152.t1.1	Cre12.g489152.t1.1		1287021,1286634	1287979,1286907	
chr12	1288038	1289029	1288071	1289001	-	RPL31	Cre12.g489153.t1.1		1288986,1288793,1288459,1288038	1289029,1288918,1288728,1288152	Cytosolic 60S large ribosomal subunit protein L31
chr12	1274766	1279133	1275467	1278894	-	Cre12.g489200.t1.1	Cre12.g489200.t1.1		1278733,1278451,1278221,1278011,1277205,1277001,1276762,1276603,1276334,1276030,1274766	1279133,1278512,1278306,1278104,1277869,1277086,1276841,1276661,1276435,1276116,1275854	
chr12	1264994	1274249	1265969	1273820	-	Cre12.g489250.t1.2	Cre12.g489250.t1.2		1273985,1273658,1273295,1273021,1272719,1272204,1272044,1270642,1270343,1270039,1266422,1266133,1264994	1274249,1273837,1273351,1273092,1272824,1272405,1272089,1271922,1270420,1270170,1269880,1266260,1266021	
chr12	1250655	1263419	1251636	1263319	-	Cre12.g489300.t1.1	Cre12.g489300.t1.1		1263273,1263161,1262860,1262500,1261614,1261201,1260863,1260426,1260252,1259918,1259579,1259328,1259155,1257765,1257601,1257392,1257145,1256977,1256763,1256587,1256404,1256211,1255989,1255828,1255643,1255229,1254933,1254707,1254532,1254319,1254126,1253901,1253737,1253552,1253296,1253057,1252889,1252667,1252495,1252312,1252131,1251915,1250655	1263419,1263205,1262979,1262583,1261841,1261260,1260976,1260512,1260286,1259942,1259644,1259393,1259220,1257830,1257666,1257457,1257210,1257042,1256831,1256655,1256475,1256279,1256054,1255896,1255711,1255297,1255001,1254775,1254600,1254390,1254194,1253966,1253805,1253620,1253361,1253122,1252954,1252735,1252563,1252383,1252199,1251977,1251812	null-allele mutant was isolated (PMID 29743196)
chr12	1247380	1250651	1247590	1250471	+	Cre12.g489350.t1.1	Cre12.g489350.t1.1		1247380,1247884,1249632,1250369	1247736,1249349,1250020,1250651	
chr12	1238340	1247331	1238619	1246740	+	PTB7	Cre12.g489400.t1.2		1238340,1238880,1239194,1239492,1239758,1240043,1240595,1241045,1241308,1241782,1242577,1242841,1243189,1243591,1243912,1244606,1245041,1245558,1245944,1246602	1238661,1238942,1239314,1239529,1239768,1240192,1240739,1241069,1241521,1242412,1242630,1242930,1243233,1243726,1244055,1244736,1245150,1245665,1246055,1247331	Putative phosphate transporter, similar to yeast Pho89, Neurospora PHO4 probable Na+/Pi symporters;
chr12	1217650	1238291	1218114	1237158	+	Cre12.g489450.t1.1	Cre12.g489450.t1.1		1217650,1218076,1218469,1219097,1222973,1232654	1217924,1218210,1218930,1222849,1232529,1238291	
chr12	1213300	1217341	1213514	1216690	+	Cre12.g489500.t1.1	Cre12.g489500.t1.1		1213300,1214459,1214958	1214310,1214843,1217341	
chr12	1208832	1213199	1209480	1213055	-	Cre12.g489550.t1.1	Cre12.g489550.t1.1		1212771,1211924,1209952,1208832	1213199,1212647,1211783,1209814	
chr12	1203860	1208821	1204192	1208651	+	Cre12.g489600.t1.1	Cre12.g489600.t1.1		1203860,1204991,1205647,1205973,1206409,1206734,1206965,1207245,1207531,1207867,1208409	1204823,1205184,1205733,1206165,1206539,1206832,1207071,1207324,1207695,1208157,1208821	
chr12	1198620	1203803	1199689	1203346	+	Cre12.g489650.t1.1	Cre12.g489650.t1.1		1198620,1199496,1200590,1201212,1201695,1201992,1202440,1202998	1199269,1200279,1200981,1201539,1201877,1202085,1202721,1203803	
chr12	1195026	1198519	1195855	1198401	-	OTC1	Cre12.g489700.t1.2		1198047,1197417,1196899,1196322,1195026	1198519,1197627,1196960,1196594,1196050	Ornithine carbamoyltransferase (OTC) (ARG3 in yeast); chloroplast-targeted (by homology to At1g75330); arg4 is probably a mutant in that gene; note however that arg4 is not rescued by citrulline, whereas an OTC mutant should
chr12	1190448	1194582	1190988	1194487	-	FAP52	Cre12.g489750.t1.2		1194313,1194107,1193717,1192678,1192197,1190448	1194582,1194241,1193794,1192950,1192496,1191930	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG14 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400
chr12	1188270	1190441	1188463	1190152	+	Cre12.g489800.t1.2	Cre12.g489800.t1.2		1188270,1189013,1189364,1189885	1188725,1189126,1189461,1190441	
chr12	1189770	1190441	1189839	1190152	+	Cre12.g489800.t2.1	Cre12.g489800.t2.1		1189770	1190441	
chr12	1183700	1188072	1184433	1187035	+	Cre12.g489850.t1.2	Cre12.g489850.t1.2		1183700,1185494,1186058,1186433	1185273,1185901,1186199,1188072	Serine/Threonine Protein Kinase Homolog 10
chr12	1169950	1182731	1170319	1181266	+	CYG54	Cre12.g489900.t1.1		1169950,1170704,1171007,1171376,1171718,1172117,1172555,1172852,1173359,1173671,1174080,1174896,1175154,1175822,1176407,1179425,1179770,1180209,1180720	1170437,1170812,1171108,1171490,1171918,1172347,1172608,1173157,1173460,1173925,1174736,1175008,1175674,1176174,1179223,1179500,1179892,1180459,1182731	Protein with domain similar to isoform A [Drosophila melanogaster]
chr12	1167570	1169902	1167767	1169176	+	Cre12.g489950.t1.2	Cre12.g489950.t1.2		1167570,1167934,1168234,1168598,1168951	1167800,1168107,1168408,1168803,1169902	
chr12	1163350	1167519	1163468	1166890	+	EIF2A	Cre12.g490000.t1.2		1163350,1163629,1163862,1164019,1165439,1165915,1166324,1166800	1163540,1163751,1163932,1164076,1165642,1166161,1166460,1167519	putative eukaryotic translation initiation factor 2 alpha-subunit-like; eIF2
chr12	1158740	1161975	1159238	1161589	-	Cre12.g490050.t1.2	Cre12.g490050.t1.2		1161935,1161328,1161116,1160944,1160682,1160345,1159880,1159592,1158740	1161975,1161773,1161176,1160983,1160752,1160422,1160103,1159761,1159431	homologous to Arabidopsis GONST1 (GDP-mannose Golgi transporter, vanadate-resistance protein) and GONST2
chr12	1155754	1158733	1155845	1158310	+	Cre12.g490100.t1.2	Cre12.g490100.t1.2		1155754,1156115,1156706,1157097,1157651,1158120	1156022,1156278,1156791,1157320,1157820,1158733	homologous to Arabidopsis GONST1 (GDP-mannose Golgi transporter, vanadate-resistance protein) and GONST2; this is the longer isoform, possibly with a different localization
chr12	304860	306591	304938	305953	+	Cre12.g490141.t1.1	Cre12.g490141.t1.1		304860	306591	
chr12	1145670	1155585	1146298	1155394	-	HEL48	Cre12.g490150.t1.1		1155136,1154809,1154523,1154222,1154045,1153775,1153492,1153163,1152947,1152697,1152297,1151903,1151553,1151321,1150944,1150583,1150259,1150053,1149847,1149444,1149044,1148795,1148452,1148194,1146739,1145670	1155585,1154939,1154646,1154234,1154075,1153906,1153606,1153237,1153006,1152754,1152411,1152017,1151627,1151398,1151082,1150714,1150317,1150118,1149933,1149578,1149301,1148861,1148543,1148292,1148028,1146550	DEAD/DEAH box helicase, similar to RECQ.  Contains HRDC domain
chr12	1145670	1155585	1146298	1155394	-	HEL48	Cre12.g490150.t2.1		1155136,1154809,1154513,1154045,1153775,1153492,1153163,1152947,1152697,1152297,1151903,1151553,1151321,1150944,1150583,1150259,1150053,1149847,1149444,1149044,1148795,1148452,1148194,1146739,1145670	1155585,1154939,1154646,1154075,1153906,1153606,1153237,1153006,1152754,1152411,1152017,1151627,1151398,1151082,1150714,1150317,1150118,1149933,1149578,1149301,1148861,1148543,1148292,1148028,1146550	DEAD/DEAH box helicase, similar to RECQ.  Contains HRDC domain
chr12	1141049	1145375	1142207	1144648	-	Cre12.g490200.t1.2	Cre12.g490200.t1.2		1143880,1143307,1142929,1141049	1145375,1143702,1143061,1142710	
chr12	1131142	1140815	1131332	1140716	-	Cre12.g490250.t1.2	Cre12.g490250.t1.2		1140566,1140081,1139572,1139158,1138396,1137830,1137503,1137112,1136698,1136034,1135626,1135252,1134921,1134460,1134079,1133597,1133074,1131983,1131142	1140815,1140466,1139639,1139301,1138923,1138041,1137579,1137223,1136922,1136213,1135715,1135328,1135014,1134528,1134169,1133760,1133272,1132923,1131683	
chr12	1126933	1130845	1127184	1130536	-	MSD4	Cre12.g490300.t1.2		1130377,1129887,1129259,1128932,1128512,1128003,1127591,1126933	1130845,1129955,1129375,1129018,1128613,1128122,1127658,1127308	
chr12	1119098	1126807	1119887	1126779	-	HDS1	Cre12.g490350.t1.1		1126704,1126401,1125804,1125451,1125016,1124610,1124167,1123834,1123288,1122784,1122171,1121735,1121112,1120603,1120255,1119098	1126807,1126493,1125910,1125526,1125087,1124755,1124272,1123903,1123454,1122957,1122308,1121851,1121369,1120849,1120358,1119983	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase), chloroplast precursor; (ispG) (gcpE) [PMID: 15849308]
chr12	1114023	1116138	1115112	1116068	-	Cre12.g490450.t1.1	Cre12.g490450.t1.1		1115513,1114023	1116138,1115121	
chr12	1116236	1119077	1116309	1118520	+	Cre12.g490451.t1.1	Cre12.g490451.t1.1		1116236,1116636,1117115,1117331,1117755,1118136,1118418	1116501,1116981,1117120,1117505,1117807,1118230,1119077	
chr12	1110735	1112794	1110766	1111668	+	CGL78	Cre12.g490500.t1.2		1110735,1111060,1111493	1110985,1111289,1112794	
chr12	1106856	1110687	1107291	1109359	+	Cre12.g490550.t1.1	Cre12.g490550.t1.1		1106856,1107221,1107528,1107944,1108571,1109029	1107105,1107437,1107726,1108271,1108659,1110687	
chr12	1104906	1106784	1105280	1106588	+	Cre12.g490600.t1.2	Cre12.g490600.t1.2		1104906,1105686,1106156,1106453	1105499,1105937,1106275,1106784	
chr12	1100780	1104782	1101539	1104672	-	Cre12.g490650.t1.2	Cre12.g490650.t1.2		1104485,1104259,1103981,1103467,1103150,1102918,1102484,1102189,1101887,1100780	1104782,1104308,1104100,1103613,1103203,1102962,1102737,1102228,1101952,1101575	
chr12	1096696	1100777	1096908	1099677	+	MIN1	Cre12.g490700.t1.2		1096696,1097019,1097208,1097542,1098014,1098435,1098929,1099542	1096939,1097092,1097300,1097707,1098102,1098731,1099012,1100777	mini-eyespot protein required for eyespot assembly and organization; min1 mutant cells contain mini eyespots and do not phototax; MIN1 protein contains predicted C2, transmembrane, and LysM domains and is potentially membrane-associated; to date, the MIN1 domain structure is unique; Genbank entry AY452057
chr12	1093052	1096485	1093485	1095989	-	Cre12.g490750.t1.1	Cre12.g490750.t1.1		1095681,1095141,1094975,1094669,1094141,1093946,1093052	1096485,1095372,1095060,1094834,1094386,1093966,1093827	
chr12	1081687	1093005	1083540	1092689	-	Cre12.g490800.t1.1	Cre12.g490800.t1.1		1092665,1092388,1091954,1091578,1090934,1090538,1090051,1089427,1088485,1086367,1085962,1085390,1085142,1084745,1084434,1084034,1081687	1093005,1092489,1092031,1091686,1091292,1090611,1090268,1089885,1089243,1088237,1086026,1085797,1085208,1084807,1084571,1084210,1083750	
chr12	1070736	1081665	1070922	1081184	+	Cre12.g490850.t1.1	Cre12.g490850.t1.1		1070736,1071384,1071708,1072015,1072742,1073487,1073902,1074170,1074708,1075133,1075581,1075883,1076694,1077175,1077536,1077892,1078422,1078921,1079384,1080054,1080478,1080948	1070994,1071482,1071776,1072240,1072923,1073678,1073921,1074314,1074878,1075258,1075676,1076030,1076866,1077309,1077644,1078021,1078572,1079088,1079647,1080215,1080724,1081665	
chr12	1069086	1070657	1069634	1070553	+	Cre12.g490891.t1.2	Cre12.g490891.t1.2		1069086,1069570,1069783,1070261	1069218,1069646,1069925,1070657	
chr12	1057454	1062495	1057682	1062463	-	Cre12.g490950.t2.1	Cre12.g490950.t2.1		1062117,1061696,1061474,1061208,1060808,1060331,1059949,1059538,1059369,1059039,1057454	1062495,1062001,1061560,1061380,1060984,1060516,1060167,1059778,1059441,1059170,1058877	
chr12	1057280	1062495	1057682	1062463	-	Cre12.g490950.t1.2	Cre12.g490950.t1.2		1062117,1061696,1061474,1061208,1060808,1060331,1059949,1059538,1059369,1059039,1057280	1062495,1062001,1061560,1061380,1060984,1060516,1060167,1059778,1059441,1059170,1058877	
chr12	1050936	1057277	1051209	1056301	+	Cre12.g491000.t1.2	Cre12.g491000.t1.2		1050936,1051523,1051867,1053139,1053494,1054025,1054657,1055049,1055295,1055627,1056078	1051241,1051586,1052230,1053230,1053742,1054346,1054874,1055132,1055366,1055769,1057277	
chr12	1047286	1050705	1047357	1049386	+	RIR2	Cre12.g491050.t1.2		1047286,1047777,1048082,1048422,1048811,1049277	1047679,1047937,1048257,1048604,1049044,1050705	Ribonucleotide reductase (RNR), small subunit.  Previously annotated as RIR2A. Identified by Abe et al. 24 [PMID: 15459796] as NSG2, a gene expressed during nitrogen-starved gametogenesis. ts-lethal mutations block DNA replication (PMID 25336509)
chr12	1039846	1046767	1040222	1046211	+	Cre12.g491100.t1.2	Cre12.g491100.t1.2		1039846,1040127,1040657,1041199,1041990,1042557,1042862,1043198,1043499,1043844,1044227,1044729	1040041,1040270,1040934,1041655,1042343,1042607,1042942,1043275,1043605,1044075,1044364,1046767	May contain additional coding sequence in intronic N-island PMID: 27175017
chr12	1037330	1039735	1037897	1039534	-	VPS55	Cre12.g491150.t1.1		1039512,1039384,1039286,1038827,1038313,1037330	1039735,1039436,1039308,1038937,1038394,1038005	Expressed Protein. Similar to VPS55, a late endosomal protein involved in late endosome to vacuole trafficking; functional homolog of human obesity receptor gene-related protein (OB-RGRP)
chr12	1032778	1037255	1033615	1037206	-	Cre12.g491200.t1.1	Cre12.g491200.t1.1		1037103,1036946,1036501,1036215,1035827,1035588,1035121,1034690,1034402,1033752,1032778	1037255,1036996,1036827,1036295,1035961,1035664,1035259,1034768,1034541,1034235,1033615	
chr12	1026396	1032683	1026519	1031640	+	Cre12.g491250.t1.1	Cre12.g491250.t1.1		1026396,1026980,1027311,1027973,1028228,1028595,1028823,1029139,1029437,1029882,1030292,1030759,1030902,1031307	1026619,1027078,1027352,1028005,1028278,1028627,1028843,1029180,1029478,1029929,1030543,1030783,1031085,1032683	
chr12	1023436	1026298	1024185	1026247	-	Cre12.g491300.t1.2	Cre12.g491300.t1.2		1025874,1024456,1023436	1026298,1025206,1024185	
chr12	1020736	1023087	1020821	1022603	+	Cre12.g491400.t1.2	Cre12.g491400.t1.2		1020736,1021180,1021737,1022011,1022561	1020968,1021583,1021839,1022187,1023087	
chr12	1015366	1020667	1015708	1019992	+	Cre12.g491450.t1.1	Cre12.g491450.t1.1		1015366,1015657,1017558,1018084,1018440,1018807,1019223	1015458,1017112,1017776,1018155,1018538,1018901,1020667	
chr12	1010410	1015255	1011036	1015076	-	UBC1	Cre12.g491500.t1.2		1014819,1014281,1013822,1013405,1013027,1012692,1012256,1011623,1010410	1015255,1014443,1013861,1013588,1013075,1012787,1012401,1011740,1011288	Ubiquitin activating enzyme E1 like protein; similar to eubacterial ThiF involved in synthesizing the thiazole moiety of thiamine
chr12	1008050	1010355	1008683	1010245	-	Cre12.g491550.t1.2	Cre12.g491550.t1.2		1010135,1009734,1009417,1009081,1008050	1010355,1009788,1009521,1009194,1008791	
chr12	996290	1007545	997152	1007315	-	PTB1	Cre12.g491600.t1.1		1007255,1007094,1006781,1006397,1006055,1005674,1005219,1004807,1004219,1003291,1000812,1000218,999799,999450,999147,998718,998194,997835,996290	1007545,1007106,1006893,1006473,1006116,1005703,1005436,1004866,1004416,1003836,1003122,1000561,999933,999551,999225,998857,998405,997949,997338	Phosphate transporter [gi:21218056], similar to yeast Pho89, Neurospora PHO4 probable Na+/Pi symporter. Knockout confers arsenate resistance [PMID: 12826625]
chr12	968859	970765	969077	969972	-	Cre12.g491950.t1.2	Cre12.g491950.t1.2		969761,969476,968859	970765,969603,969077	
chr12	970813	975345	972068	975276	-	Cre12.g491951.t1.1	Cre12.g491951.t1.1		975256,974776,973605,973119,972396,970813	975345,974821,973823,973235,972543,972118	
chr12	970813	974345	972068	974047	-	Cre12.g491951.t2.1	Cre12.g491951.t2.1		974002,973605,973119,972396,970813	974345,973823,973235,972543,972118	
chr12	975392	996235	975730	994844	-	Cre12.g491952.t1.1	Cre12.g491952.t1.1		996086,994817,994610,991915,990702,989737,988856,987803,986086,984899,983896,982994,981945,979968,979008,978786,978293,976805,976211,975392	996235,994925,994652,992412,991238,990411,989524,988501,986650,985089,984549,983737,982637,980708,979696,978844,978385,976892,976282,976018	
chr12	975392	988525	975730	988491	-	Cre12.g491952.t2.1	Cre12.g491952.t2.1		987803,986086,984899,983896,982994,981945,979968,979008,978786,978293,976805,976211,975392	988525,986650,985089,984549,983737,982637,980708,979696,978844,978385,976892,976282,976018	
chr12	651071	657686	652526	657353	-	Cre12.g492050.t1.2	Cre12.g492050.t1.2		657270,656744,655807,655590,655068,653604,652998,651071	657686,657030,656495,655648,655160,653691,653069,652814	
chr12	642615	644996	643173	644874	-	Cre12.g492150.t1.2	Cre12.g492150.t1.2		644761,644261,643858,643526,642615	644996,644315,643962,643639,643281	
chr12	645127	647458	645246	647076	+	Cre12.g492151.t1.1	Cre12.g492151.t1.1		645127,645683,646409,646908	645562,646194,646546,647458	
chr12	647461	648416	647764	648185	-	Cre12.g492152.t1.1	Cre12.g492152.t1.1		648171,647461	648416,647954	
chr12	630867	642483	630955	641770	+	Cre12.g492200.t1.2	Cre12.g492200.t1.2		630867,631407,632226,632563,636902,637938,638423,638904,639337,640078,640424,640796,641572	631028,632026,632315,636693,637735,638102,638551,639029,639465,640231,640585,641199,642483	
chr12	625689	630626	626394	629732	-	TRZ3	Cre12.g492250.t1.1		629949,629323,629020,628532,628018,627424,626985,625689	630626,629839,629197,628670,628341,627849,627212,626751	sequence similarity with prokaryotic RNase Z enzymes, though it is not known whether this gene product possesses the catalytic region of RNase Z
chr12	625689	630425	626394	629732	-	TRZ3	Cre12.g492250.t2.1		629949,629323,629020,628532,628018,627424,626985,625689	630425,629839,629197,628670,628341,627849,627212,626751	sequence similarity with prokaryotic RNase Z enzymes, though it is not known whether this gene product possesses the catalytic region of RNase Z
chr12	623863	625556	624374	625292	-	NUO10	Cre12.g492300.t1.2		625387,624815,623863	625556,625300,624392	NADH:ubiquinone oxidoreductase (Complex I) subunit 10, mitochondrial; PSST-like protein.
chr12	616405	623506	616770	623301	-	Cre12.g492350.t1.2	Cre12.g492350.t1.2		623262,623040,622725,622293,621852,621580,621047,620532,620138,619854,619611,619156,618715,618247,617805,617378,616405	623506,623189,622850,622440,622078,621624,621136,620619,620211,620008,619686,619272,618799,618426,617874,617490,617024	
chr12	615894	616356	616079	616323	-	Cre12.g492400.t1.2	Cre12.g492400.t1.2		615894	616356	
chr12	603182	615606	603668	615346	-	Cre12.g492450.t1.2	Cre12.g492450.t1.2		615293,615098,614354,614021,613542,613028,612495,611931,611646,611287,610871,610400,609944,609096,608723,608326,607935,607414,606948,606541,606082,605705,605173,604723,604265,603182	615606,615194,614824,614147,613714,613373,612680,612361,611802,611363,611065,610471,610123,609452,608908,608418,608159,607595,607224,606738,606202,605775,605415,604875,604390,603818	ATP-dependent RNA helicase, with homology to Ostreococcus tauri mRNA splicing factor
chr12	598031	601246	598474	600902	-	Cre12.g492500.t1.1	Cre12.g492500.t1.1		600706,600402,600168,599802,599530,599098,598031	601246,600464,600227,600000,599628,599270,598911	
chr12	601447	603114	601500	602451	+	Cre12.g492503.t1.1	Cre12.g492503.t1.1		601447,601844,602055,602338	601635,601926,602278,603114	
chr12	665146	667891	665305	667596	-	Cre12.g492504.t1.1	Cre12.g492504.t1.1		667538,666524,665146	667891,667201,666042	
chr12	589117	594296	589497	593953	+	Cre12.g492550.t1.1	Cre12.g492550.t1.1		589117,589465,590421,591090,591488,591980,592740,593209,593506	589362,590016,590864,591224,591719,592218,592865,593295,594296	
chr12	589117	594296	589497	593953	+	Cre12.g492550.t2.1	Cre12.g492550.t2.1		589117,589465,590421,591090,591488,591980,592740,593209,593506	589344,590016,590864,591224,591719,592218,592865,593295,594296	
chr12	582138	587926	583591	587249	-	FAP346	Cre12.g492600.t1.2		587203,586686,586141,585863,585521,585249,584926,584574,584344,584061,582138	587926,586849,586458,585976,585660,585389,585094,584663,584417,584127,583834	similar to fasciclin/TGFbeta-induced protein/Volvox CAM (algal-CAM) [PMID: 7925267]; contains 3 (!) FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular, GPI-anchored (by homology)
chr12	576393	582046	577030	581730	-	FAS2	Cre12.g492650.t1.2		581681,581194,580489,580235,579941,579665,579386,579119,578854,578538,578139,577828,577613,577381,576393	582046,581357,580806,580348,580080,579793,579557,579208,578927,578604,578366,577917,577686,577444,577240	similar to periostin/fasciclin/TGFbeta-induced protein; contains 4 FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular, GPI-anchored (by homology)
chr12	571611	576346	572499	576206	-	FAS1	Cre12.g492700.t1.2		576166,575699,575441,575195,574910,574650,574409,574081,573818,573519,573243,573083,572843,571611	576346,575871,575595,575314,574970,574730,574449,574242,573931,573671,573369,573150,572947,572665	similar to fasciclin/TGFbeta-induced protein/Volvox CAM (algal-CAM) [PMID: 7925267]; contains 3 (!) FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular, GPI-anchored (by homology)
chr12	554257	571608	554470	571556	+	Cre12.g492750.t1.1	Cre12.g492750.t1.1		554257,554716,554926,555689,555960,556471,556830,557131,557672,558071,558411,558908,559243,559560,560058,560370,560748,561108,561510,561730,562016,562299,562702,562962,563126,563460,563814,564094,564603,564800,565087,565370,566216,566384,566877,567346,567709,568032,568461,569125,569339,569546,569870,570221	554615,554813,555516,555754,556289,556605,556926,557339,557812,558218,558723,559079,559410,559929,560185,560636,560984,561347,561590,561846,562156,562535,562812,563006,563317,563650,563945,564451,564668,564943,565251,566074,566281,566725,567209,567600,567894,568286,568946,569190,569441,569760,570088,571608	
chr12	538267	547195	538915	546708	+	Cre12.g492850.t1.1	Cre12.g492850.t1.1		538267,539108,539422,539688,539924,540597,541014,541303,541437,541702,542365,542698,542984,543142,543320,543640,543940,544199,544387,544576,544750,545008,545354,545519,545889,546151,546576	538987,539251,539584,539826,540472,540896,541191,541337,541599,542204,542572,542796,543025,543201,543456,543781,544071,544245,544486,544617,544865,545245,545401,545575,546022,546424,547195	
chr12	547201	554156	547379	553627	-	EBM7	Cre12.g492851.t1.1		552813,552488,552147,551680,551266,550976,550731,550502,550045,548756,547201	554156,552600,552278,551760,551492,551011,550794,550584,550248,549858,548584	
chr12	535271	538086	535864	537081	-	Cre12.g492900.t1.1	Cre12.g492900.t1.1		537562,537283,536950,536791,536614,536370,535271	538086,537473,537091,536830,536669,536469,536128	
chr12	530136	535259	530372	534559	+	RIR1	Cre12.g492950.t1.2		530136,530556,530810,531011,531237,531569,531904,532180,532613,533079,534219	530489,530675,530871,531098,531398,531736,532046,532348,532902,534056,535259	Ribonucleotide reductase (RNR), large subunit, class I; (NSG5) [PMID: 15459796]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145].  Identified by Abe et al. 24 [PMID: 15459796] as NSG5.ts-lethal mutations block DNA replication (PMID 25336509)
chr12	668216	673551	668329	673099	-	Cre12.g492954.t1.1	Cre12.g492954.t1.1		673086,672210,671786,671249,670391,669395,668896,668497,668216	673551,672746,671923,671509,671059,670096,669276,668727,668370	
chr12	523202	530007	523868	529879	-	Cre12.g493000.t1.2	Cre12.g493000.t1.2		529558,528901,528513,528222,527849,527340,526996,526729,526365,525821,524882,524384,523202	530007,529241,528585,528320,527963,527416,527118,526810,526510,526066,525429,524588,524120	
chr12	517698	523199	517805	522233	+	Cre12.g493050.t1.2	Cre12.g493050.t1.2		517698,518053,518638,519130,519432,519869,520340,520840,521090,521469,522072	517925,518474,518866,519288,519578,520024,520495,520865,521255,521805,523199	null-allele mutant was isolated (PMID 29743196)
chr12	514892	517577	514985	517337	-	Cre12.g493100.t1.1	Cre12.g493100.t1.1		517273,516745,516234,515888,514892	517577,517142,516479,515989,515687	
chr12	511638	514890	511857	514292	+	LTO1	Cre12.g493150.t1.2		511638,512031,512408,512983,513316,513773,514121	511947,512129,512664,513100,513435,513958,514890	Conserved expressed membrane protein; Arabidopsis homolog predicted to be plastid targeted
chr12	505818	510999	505931	508702	+	Cre12.g493200.t1.1	Cre12.g493200.t1.1		505818,507167,507549,507909,508268	506130,507365,507650,508081,510999	
chr12	499212	505337	500242	504760	-	FAP358	Cre12.g493250.t1.2		504688,504427,504106,503707,503376,502897,502572,502266,502020,501617,501102,500834,499212	505337,504543,504276,503864,503512,503050,502686,502431,502109,501837,501299,500970,500669	null-allele mutant was isolated (PMID 29743196); Similar to protein kinases
chr12	484602	499157	485941	498787	-	Cre12.g493300.t1.2	Cre12.g493300.t1.2		498689,498308,498007,497654,497349,496450,496117,495727,495446,494897,494561,494281,494020,493575,493066,492687,492270,491738,491350,490870,490609,490175,488894,488311,484602	499157,498446,498142,497717,497514,497110,496251,495926,495519,495215,494664,494338,494157,493695,493169,492788,492399,491949,491409,490950,490655,490284,489908,488713,488143	
chr12	482858	484309	483262	484119	-	Cre12.g493350.t1.1	Cre12.g493350.t1.1		484051,483697,482858	484309,483782,483459	
chr12	472572	482547	472709	482216	-	SMC4	Cre12.g493400.t1.1		482093,481829,481456,481125,480878,480632,480325,479981,479711,479428,479129,478901,478651,478420,477914,477550,477173,476903,476595,476218,475951,475712,475457,475236,474791,474525,474250,473916,473535,473179,472572	482547,482020,481632,481202,480930,480710,480420,480130,479845,479589,479262,478981,478755,478517,478123,477710,477334,476998,476675,476359,476018,475793,475536,475310,474953,474616,474321,474059,473609,473338,473026	Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation.  ChromoDB CPC341; ts-lethal mutant block at S/M (PMID 29743196)
chr12	678956	693741	679701	686633	-	Cre12.g493404.t1.1	Cre12.g493404.t1.1		693466,686615,686371,685927,685101,682961,682702,682105,681773,681385,680926,680501,679988,678956	693741,686810,686430,686124,685646,684933,682892,682451,681907,681486,681004,680640,680189,679701	
chr12	465768	472569	465986	471729	+	Cre12.g493450.t1.1	Cre12.g493450.t1.1		465768,466225,467043,467492,468061,468456,468934,469269,469600,469976,470688,471058,471294,471475,471684	466027,466863,467244,467854,468126,468641,469056,469448,469752,470497,470801,471126,471341,471525,472569	
chr12	460166	465637	461258	465364	-	SOX1	Cre12.g493500.t1.2		465218,464881,464345,463981,463648,463382,462958,462629,462305,461795,460166	465637,464956,464458,464148,463690,463458,463176,462677,462412,462024,461552	
chr12	444208	460159	444543	459911	+	THK3	Cre12.g493550.t1.2		444208,444840,445200,446272,446710,447229,447540,447884,448550,448900,449298,449871,450306,451038,451753,452872,453368,453904,454521,455420,456103,456697,457731,458116,458490,459209,459698	444668,444970,445507,446367,446873,447344,447616,448258,448672,449022,449398,450081,450800,451415,451845,453102,453472,454290,455252,455719,456400,457491,457965,458188,459013,459392,460159	
chr12	437892	444107	438999	443860	-	Cre12.g493600.t1.1	Cre12.g493600.t1.1		441634,437892	444107,441435	
chr12	434764	437837	436583	437775	-	Cre12.g493650.t1.2	Cre12.g493650.t1.2		437675,437336,434764	437837,437422,437011	
chr12	427598	434759	427939	434004	+	ZXE2	Cre12.g493700.t1.2		427598,428526,429342,429902,430389,430647,431338,431791,432253,432661,432978,433492,433905	428142,428592,429531,430053,430457,430829,431412,431852,432379,432777,433175,433602,434759	FAD-dependent monooxygenase
chr12	416592	427467	417154	427082	-	Cre12.g493750.t1.2	Cre12.g493750.t1.2		426891,426547,425962,425381,425065,424654,424234,423944,423340,422958,422715,421648,421385,421086,420778,420457,420159,419778,419222,418867,418374,417959,417692,416592	427467,426673,426062,425447,425080,424720,424313,424018,423425,423077,422765,421755,421397,421178,420853,420508,420245,419863,419346,418967,418524,418083,417787,417319	
chr12	691514	693741	691560	693536	-	Cre12.g493854.t1.1	Cre12.g493854.t1.1		693466,692042,691514	693741,692176,691574	
chr12	691514	693741	691560	693536	-	Cre12.g493854.t2.1	Cre12.g493854.t2.1		693466,692042,691514	693741,692176,691574	
chr12	405922	407577	406332	407162	-	Cre12.g493900.t1.1	Cre12.g493900.t1.1		407417,407290,407116,406790,405922	407577,407359,407187,406968,406551	
chr12	411082	414987	412763	414386	-	CSC7	Cre12.g493903.t1.1		414628,414206,413627,413337,411082	414987,414552,413857,413405,413018	function unknown; homologs in Gonium, not Volvox
chr12	411082	414987	412731	414386	-	CSC7	Cre12.g493903.t2.1		414628,414206,413627,413337,411082	414987,414552,413801,413405,413018	function unknown; homologs in Gonium, not Volvox
chr12	403452	405828	404341	405782	-	PRPS13	Cre12.g493950.t1.2		405749,405607,405347,405174,405024,404468,403452	405828,405660,405493,405266,405095,404551,404353	imported to chloroplast; Chloroplast small ribosomal subunit S13
chr12	397818	403435	397912	403108	+	CGL82	Cre12.g494000.t1.2		397818,398074,398290,398467,398620,398776,399033,399426,400101,400377,400774,401019,403018	397997,398181,398401,398555,398688,398905,399261,399536,400238,400670,400904,402753,403435	Conserved in the Green Lineage; null-allele mutant was isolated (PMID 29743196)
chr12	390538	391273	390569	391237	+	RPL9	Cre12.g494050.t1.2		390538,390745	390653,391273	Cytosolic 60S large ribosomal subunit protein L9
chr12	392038	394799	392131	392456	+	Cre12.g494052.t1.1	Cre12.g494052.t1.1		392038	394799	
chr12	377413	390437	378196	390274	-	Cre12.g494100.t1.1	Cre12.g494100.t1.1		390137,389361,388600,387960,387391,386955,386451,386087,385459,385134,384695,384184,383773,383453,382992,382621,382302,381593,381071,380446,379928,378540,377413	390437,389822,388852,388346,387498,387050,386560,386209,385795,385208,384832,384264,383916,383533,383171,382707,382472,381718,381253,380619,380164,379563,378196	Splicing factor 3B subunit 1-related protein
chr12	375606	377067	375934	376724	-	Cre12.g494150.t1.2	Cre12.g494150.t1.2		376674,375606	377067,376313	
chr12	371854	375599	371914	375120	+	Cre12.g494200.t1.1	Cre12.g494200.t1.1		371854,372114,372707,373105	371938,372339,372808,375599	
chr12	358617	363309	360259	363041	-	Cre12.g494250.t1.2	Cre12.g494250.t1.2		362975,362761,362530,361882,361327,360978,360686,358617	363309,362809,362582,361956,361656,361070,360810,360350	
chr12	363364	365669	363703	365489	-	Cre12.g494252.t1.1	Cre12.g494252.t1.1		365464,365088,363364	365669,365262,364817	
chr12	356760	358607	357066	357847	+	Cre12.g494300.t1.2	Cre12.g494300.t1.2		356760,357477	357116,358607	
chr12	348905	356525	349049	355685	+	Cre12.g494350.t1.2	Cre12.g494350.t1.2		348905,349568,349956,350345,351167,351497,352105,352445,352906,353374,353913,354611,355456	349164,349737,350024,350431,351272,351798,352215,352516,353055,353568,354095,354900,356525	
chr12	344574	348789	345037	348502	-	MNP2	Cre12.g494400.t1.2		348444,348083,347706,347265,346790,346475,346230,346003,345666,344574	348789,348184,347836,347400,346838,346535,346289,346095,345776,345451	ATP-binding protein, MRP/NBP35 family, N-terminal iron-sulfur binding sequence. Similar to S. cerevisiae Nbp35, an essential protein required for cytosolic iron-sulfur protein assembly; MNP = MRP/NBP35-like P-loop NTPase
chr12	343330	344322	343438	343826	+	PRPS16	Cre12.g494450.t1.2		343330	344322	imported to chloroplast; Chloroplast small ribosomal subunit protein S16
chr12	337433	343229	338285	343197	-	CDKI1	Cre12.g494500.t1.2		343122,342843,342336,342022,341623,341101,338839,338504,337433	343229,343004,342480,342044,341833,341311,339130,338702,338285	Chlamydomonas specific; PDVVVRE motif; Novel CDK subfamily; also known as LF2 for Long Flagella mutant 2; protein plays a role in flagellar length and is found predominantly, if not exclusively, in the cell body in punctate structures
chr12	330696	336603	333215	336387	-	RNP10	Cre12.g494550.t1.1		336177,335902,335609,335415,334877,334181,333946,330696	336603,336075,335776,335522,335233,334683,333990,333588	putative RNA-binding protein; contains RNA-binding region RNP-1 (SPL6)
chr12	330696	336603	333215	336387	-	RNP10	Cre12.g494550.t2.1		336177,335902,335609,335415,334877,334181,330696	336603,336075,335776,335522,335233,334683,333588	putative RNA-binding protein; contains RNA-binding region RNP-1 (SPL6)
chr12	326930	330681	327520	329685	+	Cre12.g494600.t1.2	Cre12.g494600.t1.2		326930,329505	329236,330681	
chr12	320250	326761	320380	325199	+	CSV10	Cre12.g494650.t1.1		320250,320966,321930,322264,324546	320480,321573,322040,324163,326761	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr12	693833	695823	693879	694600	+	PRPS20	Cre12.g494750.t1.2		693833,694061,694339	693946,694233,695823	imported to chloroplast; Chloroplast small ribosomal subunit protein S2
chr12	695826	697181	695842	697016	-	DII1	Cre12.g494800.t1.1		696914,696770,696586,696349,696121,695826	697181,696846,696700,696501,696243,695854	p28 component of inner arm dyneins
chr12	697228	700110	697568	700104	-	ADK3	Cre12.g494850.t1.2		700049,699877,699679,699268,698550,697941,697228	700110,699911,699759,699531,698693,698015,697709	Adenylate kinase; probably chloroplast-targeted (by homology to KADD_ARATH); contains a C-terminal domain with two Cys residues, homologous to that found in CP12 linking GAPDH and PRK [PMID: 898547]
chr12	700202	705055	700509	704268	+	Cre12.g494900.t1.2	Cre12.g494900.t1.2		700202,700920,701456,702248,702512,702828,703214,703649,703939,704196	700663,700989,701534,702310,702597,702903,703405,703722,703996,705055	PP2A-c4
chr12	705102	707723	706591	707368	+	Cre12.g494950.t1.2	Cre12.g494950.t1.2		705102,706495,706998	705289,706641,707723	
chr12	707726	716741	709763	716172	-	Cre12.g495000.t1.1	Cre12.g495000.t1.1		715950,715266,714679,714180,713820,713249,712850,712493,712131,711428,711026,710590,710236,707726	716741,715397,714762,714257,713930,713445,712970,712618,712298,711535,711163,710811,710318,710004	
chr12	716842	724543	716942	723663	+	OPR51	Cre12.g495050.t1.2		716842,717266,718064,719787,720757,721084,721583,721973,723390	717029,717724,719503,720530,720861,721290,721645,722416,724543	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr12	724592	729993	725358	728248	+	PSR1	Cre12.g495100.t1.2		724592,726140,727201	725902,726807,729993	multi-nutrient-responsive transcription factor
chr12	729976	731241	730226	730997	-	Cre12.g495138.t1.1	Cre12.g495138.t1.1		730850,729976	731241,730655	
chr12	729996	730791	730226	730662	-	Cre12.g495138.t2.1	Cre12.g495138.t2.1		729996	730791	
chr12	730042	734763	730179	734235	+	FAP31	Cre12.g495175.t1.1		730042,731753,732067,732530,733523,733932	730331,731859,732266,732770,733596,734763	
chr12	734810	740313	735047	739260	+	FAP31	Cre12.g495250.t1.1		734810,735145,735704,736466,737000,737362,737649,738011,738390,738722,739034	735050,735450,736297,736753,737114,737495,737797,738136,738515,738847,740313	May contain additional coding sequence in exonic N-island PMID: 27175017
chr12	740316	743461	740771	743382	-	HIS6	Cre12.g495300.t1.2		743253,743123,742742,742244,741858,741532,741252,740316	743461,743178,742870,742412,741940,741607,741302,740996	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16); phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; predicted plastid targeting by Target-P; histidine biosynthesis enzyme
chr12	743562	753893	744091	752922	+	POC12	Cre12.g495350.t1.1		743562,744044,745500,746048,746322,746892,747273,747640,747885,748223,748595,749067,749390,749911,750380,750794,751030,751562,751888,752405,752800	743936,745310,745889,746127,746540,747008,747386,747736,748034,748377,748756,749184,749535,750069,750520,750844,751119,751702,752257,752578,753893	Protein found in basal body proteome [PMID: 15964273]. Human homolog encoded by gene MKS1 defective in Meckel syndrome.
chr12	753942	757463	754299	756495	+	Cre12.g495401.t1.1	Cre12.g495401.t1.1		753942,754717,755149,755754	754596,754929,755520,757463	
chr12	757512	760514	758291	759932	+	Cre12.g495450.t1.1	Cre12.g495450.t1.1		757512,758274,758862,759280,759905	758148,758657,759119,759588,760514	
chr12	760516	763131	760878	762789	-	Cre12.g495500.t1.1	Cre12.g495500.t1.1		762279,760516	763131,762135	
chr12	763232	764014	763334	763548	+	FAP385	Cre12.g495550.t1.2		763232	764014	Cr specific protein
chr12	764016	777151	765480	776588	-	Cre12.g495600.t1.1	Cre12.g495600.t1.1		776987,776469,776326,775943,775771,775422,775103,774811,774275,773948,773609,773118,772664,772084,771649,770701,770022,769487,769037,768697,768183,767681,767394,766917,766245,765932,764016	777151,776621,776386,776031,775814,775657,775167,774944,774688,774151,773755,773413,772940,772476,771848,771463,770523,769763,769287,768768,768463,767871,767564,767096,766727,766055,765695	
chr12	777243	783354	777337	782858	+	Cre12.g495650.t1.2	Cre12.g495650.t1.2		777243,777789,778558,778985,779333,779745,780053,780381,780961,781505,781936,782179,782667	777411,778038,778620,779053,779519,779842,780157,780697,781255,781735,781993,782343,783354	null-allele mutant was isolated (PMID 29743196)
chr12	783356	787381	784521	787292	-	Cre12.g495701.t1.1	Cre12.g495701.t1.1		787138,786721,786138,785183,783356	787381,786791,786521,785768,784976	
chr12	787428	789300	788164	788787	-	Cre12.g495750.t1.2	Cre12.g495750.t1.2		788607,787428	789300,788218	
chr12	789392	800233	790453	799951	+	Cre12.g495800.t1.1	Cre12.g495800.t1.1		789392,790308,790641,790804,791641,791899,792151,792443,793402,793748,794557,794730,795252,795791,796172,796611,796862,797049,797526,799951	789454,790549,790678,791491,791748,791994,792252,793282,793614,794380,794618,795051,795608,796024,796453,796737,796911,797303,799470,800233	
chr12	800235	804911	801411	804341	-	HBD1	Cre12.g495850.t1.2		804259,803688,803270,802707,802297,801804,800235	804911,803871,803338,802905,802368,801902,801507	
chr12	805012	812513	805249	811820	+	Cre12.g495900.t1.1	Cre12.g495900.t1.1		805012,805824,806050,807803,808260,808809,809311,809880,810457,810853,811427	805621,805926,807620,808029,808473,809110,809653,810295,810508,811263,812513	
chr12	812516	819521	813009	819244	-	Cre12.g495950.t1.1	Cre12.g495950.t1.1		819154,818650,818193,817619,817034,816582,816245,815936,814974,814626,814429,813867,812516	819521,818757,818273,817772,817212,816734,816334,816055,815568,814746,814471,813893,813615	
chr12	819622	822825	819656	822496	+	CYN20-3	Cre12.g495951.t1.1		819622,819786,820198,820588,821061,821417,821802,822056,822421	819665,819848,820245,820745,821077,821494,821865,822146,822825	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; similar to ROC4 (AtCYP2-3) which binds thioredoxin m; probably directed to chloroplast stroma (by homology)
chr12	819622	825594	819656	825070	+	CYN20-3	Cre12.g495951.t2.1		819622,819786,820198,820588,821061,821417,821802,822056,822421,824352,825070	819665,819848,820245,820745,821077,821494,821865,822146,823107,824997,825594	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; similar to ROC4 (AtCYP2-3) which binds thioredoxin m; probably directed to chloroplast stroma (by homology)
chr12	822872	825595	823191	825070	+	Cre12.g495952.t1.1	Cre12.g495952.t1.1		822872,824352,825070	823397,824997,825595	
chr12	825596	837651	825896	837432	-	Cre12.g495953.t1.1	Cre12.g495953.t1.1		837383,837221,836952,836551,836143,825596	837651,837233,837162,836643,836272,825896	
chr12	857282	860625	860180	860457	-	Cre12.g495954.t1.1	Cre12.g495954.t1.1		857282	860625	
chr12	860672	867535	862941	866983	-	Cre12.g495955.t1.1	Cre12.g495955.t1.1		865611,864442,860672	867535,865454,863259	
chr12	867585	875055	870507	875001	-	Cre12.g495956.t1.1	Cre12.g495956.t1.1		874982,873851,873629,873089,871588,870985,867585	875055,874548,873687,873181,871675,871056,870795	
chr12	881356	886337	882062	883386	+	Cre12.g495957.t1.1	Cre12.g495957.t1.1		881356,881791,883357	881594,882549,886337	
chr12	898646	901877	899041	899222	+	Cre12.g495958.t1.1	Cre12.g495958.t1.1		898646	901877	
chr12	905780	927085	905848	917530	-	Cre12.g495959.t1.1	Cre12.g495959.t1.1		926504,917148,916222,915005,913864,912941,912551,908802,908150,906966,905780	927085,917558,916860,915751,914538,913585,912634,909108,908367,907709,906609	
chr12	3488015	3491739	3488728	3491528	-	FAP149	Cre12.g496100.t1.2		3491500,3491355,3490997,3490173,3489428,3489142,3488015	3491739,3491408,3491128,3490272,3489634,3489300,3488894	Flagellar Associated Protein, found in the flagellar proteome
chr12	3480230	3485170	3480450	3484215	+	Cre12.g496150.t1.2	Cre12.g496150.t1.2		3480230,3480575,3480760,3481047,3481446,3481718,3482113,3482762,3483389,3483834	3480500,3480684,3480836,3481109,3481536,3481897,3482327,3482998,3483517,3485170	
chr12	3471790	3480122	3471945	3479559	+	Cre12.g496200.t1.2	Cre12.g496200.t1.2		3471790,3472104,3472342,3472935,3473317,3473848,3474357,3474743,3475231,3475803,3476434,3476917,3478221,3478642,3479388	3472017,3472229,3472389,3473045,3473453,3474042,3474483,3474911,3475472,3476060,3476703,3477834,3478410,3479210,3480122	Exportin-1/Importin-beta-like protein probably involved in tRNA export out of the nucleus
chr12	3463760	3471729	3464422	3470471	+	Cre12.g496250.t1.1	Cre12.g496250.t1.1		3463760,3464921,3469046,3469408,3469663	3464697,3468819,3469123,3469537,3471729	
chr12	3456950	3460231	3457137	3459642	+	Cre12.g496300.t1.1	Cre12.g496300.t1.1		3456950,3457358,3457582,3458997	3457289,3457437,3458819,3460231	
chr12	3460264	3463399	3462885	3463057	-	Cre12.g496302.t1.1	Cre12.g496302.t1.1		3460264	3463399	
chr12	3448178	3456099	3449019	3455957	-	SSD2	Cre12.g496350.t1.2		3455823,3455632,3455447,3455082,3454679,3454331,3453907,3453537,3453042,3452470,3452010,3451758,3451366,3451067,3450861,3450412,3449945,3449605,3448178	3456099,3455728,3455524,3455275,3454810,3454486,3454086,3453660,3453305,3452832,3452285,3451832,3451535,3451185,3450901,3450661,3450166,3449757,3449432	Contains a sterol sensing 5-transmembrane domain similar to those in SCAP, Patched, NPC1 and HMGR
chr12	3434627	3446569	3436876	3446080	-	Cre12.g496400.t1.1	Cre12.g496400.t1.1		3446493,3444862,3444329,3443643,3443026,3442670,3442391,3440999,3434627	3446569,3446164,3444681,3444123,3443529,3442864,3442498,3442219,3440833	
chr12	3446670	3448171	3446957	3447132	+	Cre12.g496402.t1.1	Cre12.g496402.t1.1		3446670	3448171	
chr12	3432423	3434479	3433215	3434203	-	RRP4	Cre12.g496450.t1.2		3432423	3434479	Homologue of S. cerevisiae Rrp4, which is a core component of the exosome, a complex of multiple 3'-5' exoribonucleases involved in RNA processing and RNA degradation
chr12	3428360	3432421	3428537	3431152	+	PHC70	Cre12.g496500.t1.1		3428360,3428804,3429242,3429704,3429925,3430373,3430627	3428619,3428834,3429527,3429773,3430208,3430501,3432421	
chr12	3423120	3428304	3423363	3427784	+	Cre12.g496550.t1.2	Cre12.g496550.t1.2		3423120,3423600,3423815,3424358,3424860,3425219,3427709	3423397,3423706,3424156,3424474,3424994,3425278,3428304	
chr12	3419316	3421411	3419853	3420706	-	Cre12.g496650.t1.2	Cre12.g496650.t1.2		3421260,3421112,3419316	3421411,3421189,3421018	
chr12	3417044	3419176	3418069	3419141	-	TRX17	Cre12.g496700.t1.2		3418967,3418722,3418390,3417044	3419176,3418793,3418521,3418252	Unusual thioredoxin (not f-type) exhibiting homology with f-type thioredoxins but contains an unusual active site HCKPC (classically thioredoxins contain a WCGPC or WCPPC active site). The N-terminal extension might represent a transit peptide.
chr12	3414500	3416955	3414565	3416514	+	NUO8	Cre12.g496750.t1.2		3414500,3414787,3414956,3415477,3415863,3416137,3416418	3414704,3414861,3415047,3415590,3415930,3416248,3416955	NADH:ubiquinone oxidoreductase (Complex I) subunit 8; homolog to bovine TYKY. gi 34328786 gb AAQ63697.1  [PMID: 15710684; PMID: 15450959]
chr12	3412114	3414359	3412945	3414054	-	Cre12.g496800.t1.2	Cre12.g496800.t1.2		3414000,3413542,3412114	3414359,3413724,3413143	
chr12	3408211	3412034	3408312	3411328	+	Cre12.g496850.t1.1	Cre12.g496850.t1.1		3408211,3408871,3409799,3410279,3410875	3408704,3409612,3410089,3410617,3412034	
chr12	3402480	3408161	3403059	3407423	+	Cre12.g496900.t1.1	Cre12.g496900.t1.1		3402480,3403639,3403898,3404207,3404510,3404902,3405162,3405484,3405776,3406307,3406667,3407119	3403400,3403734,3403980,3404343,3404546,3404965,3405255,3405557,3405902,3406473,3406840,3408161	
chr12	3390070	3402421	3390210	3401629	+	Cre12.g496950.t1.1	Cre12.g496950.t1.1		3390070,3390365,3390513,3390877,3391253,3391582,3391803,3392167,3392432,3392854,3393486,3393823,3394136,3394440,3395910,3396211,3396955,3398505,3398912,3399226,3399667,3400034,3400348,3400791,3401201	3390246,3390412,3390564,3390985,3391345,3391657,3391958,3392242,3392704,3393339,3393629,3393959,3394291,3395745,3396048,3396537,3398272,3398679,3399018,3399501,3399783,3400129,3400595,3400963,3402421	
chr12	3383831	3389939	3384657	3389773	-	FAP14	Cre12.g497000.t1.2		3389662,3389494,3389198,3388898,3388539,3387999,3387655,3387171,3386675,3386245,3385973,3385577,3383831	3389939,3389579,3389294,3389017,3388706,3388184,3387822,3387377,3386971,3386505,3386158,3385788,3385405	Conserved uncharacterized Flagellar Associated Protein; similar to Human / Mouse HEAT - like repeat containing protein; found in the flagellar proteome
chr12	3378534	3380869	3379394	3380456	-	Cre12.g497100.t1.2	Cre12.g497100.t1.2		3380765,3380083,3378534	3380869,3380457,3379939	null-allele mutant was isolated (PMID 29743196)
chr12	3380916	3383592	3381098	3383471	-	Cre12.g497101.t1.1	Cre12.g497101.t1.1		3382828,3382501,3381706,3381401,3380916	3383592,3382619,3382217,3381563,3381278	
chr12	3377250	3378480	3377528	3378258	-	Cre12.g497150.t1.2	Cre12.g497150.t1.2		3378129,3377250	3378480,3377951	
chr12	3372980	3377231	3373251	3377113	+	FAP216	Cre12.g497200.t1.2		3372980,3373493,3373765,3374025,3374382,3374683,3375161,3375540,3375962,3376444	3373319,3373580,3373875,3374183,3374510,3374904,3375323,3375802,3376309,3377231	Flagellar Associated Protein, found in the flagellar proteome
chr12	3368214	3372879	3368623	3372662	-	Cre12.g497250.t1.1	Cre12.g497250.t1.1		3372596,3372298,3371998,3369902,3369576,3369421,3369114,3368214	3372879,3372468,3372133,3371837,3369756,3369473,3369278,3368900	
chr12	3364737	3368154	3364757	3367424	+	CAS1	Cre12.g497300.t2.1		3364737,3365204,3365780,3365992,3366280,3366916	3364851,3365316,3365845,3366120,3366506,3368154	Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]. CAS is required for the expression of HLA3 and LCIA which are cooperatively associated with bicarbonate uptake for CO2-concentraing mechanism [PMID:24549931, 27791081]; CAS localization displays a mesh-like structure in the chloroplast under high-CO2 conditions, but CAS gathers inside the pyrenoid as a distinct wheel-like structure at 2 h after transfer to low-CO2 condition, and then localized to the center of the pyrenoid at 12 h [PMID: 29372336].
chr12	3364450	3368154	3364757	3367424	+	CAS1	Cre12.g497300.t1.2		3364450,3365204,3365780,3365992,3366280,3366916	3364851,3365316,3365845,3366120,3366506,3368154	Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]. CAS is required for the expression of HLA3 and LCIA which are cooperatively associated with bicarbonate uptake for CO2-concentraing mechanism [PMID:24549931, 27791081]; CAS localization displays a mesh-like structure in the chloroplast under high-CO2 conditions, but CAS gathers inside the pyrenoid as a distinct wheel-like structure at 2 h after transfer to low-CO2 condition, and then localized to the center of the pyrenoid at 12 h [PMID: 29372336].
chr12	3351920	3363829	3352082	3363395	+	PPR13	Cre12.g497350.t1.1		3351920,3352317,3352558,3353040,3353417,3353800,3354317,3354672,3355015,3355544,3356011,3356548,3356951,3357303,3357713,3358207,3359028,3359517,3360072,3360310,3361035,3361612,3362308,3362889	3352215,3352370,3352664,3353140,3353598,3354008,3354406,3354800,3355280,3355680,3356258,3356748,3357075,3357402,3358012,3358746,3359247,3359716,3360144,3360812,3361340,3362064,3362530,3363829	
chr12	3347440	3351591	3347692	3351300	+	CGL119	Cre12.g497400.t1.2		3347440,3348037,3348511,3349256,3349727,3350258,3350644,3351117	3347758,3348247,3348887,3349475,3349833,3350314,3350742,3351591	Conserved in the Green Lineage
chr12	3342044	3346989	3342345	3346730	-	Cre12.g497450.t1.2	Cre12.g497450.t1.2		3346503,3346229,3345788,3345220,3344159,3343627,3343324,3343011,3342714,3342044	3346989,3346303,3345941,3345354,3344684,3343772,3343465,3343148,3342787,3342534	
chr12	3338470	3342033	3338609	3341363	+	SNE7	Cre12.g497500.t1.2		3338470,3338827,3339214,3339513,3339784,3339986,3340234,3340482,3340847,3341224	3338703,3338980,3339344,3339627,3339825,3340036,3340306,3340615,3341005,3342033	Cinnamoyl-CoA reductase/flavanone 4-reductase, a NAD-dependent epimerase/dehydratase.  Related to Dihydrokaempferol 4-reductase (DFR); related to plant haem peroxidase that are aldehyde oxidases, flavonol/cinnamyl alcohol reductases
chr12	3328922	3331231	3329123	3331063	+	THY28	Cre12.g497650.t1.2		3328922,3329243,3329929,3330306,3330658,3330978	3329150,3329684,3330001,3330410,3330795,3331231	related to thymocyte nuclear protein, DUF589
chr12	3331280	3334701	3331314	3334210	+	Cre12.g497652.t1.1	Cre12.g497652.t1.1		3331280,3331532,3331901,3332183,3332485,3332681,3332883,3333106,3333723,3334071	3331408,3331685,3332031,3332297,3332526,3332731,3332955,3333239,3333881,3334701	
chr12	3334750	3338423	3334781	3337724	+	SNE13	Cre12.g497653.t1.1		3334750,3335031,3335532,3335865,3336134,3336334,3336579,3336825,3337171,3337585	3334893,3335184,3335662,3335979,3336175,3336384,3336651,3336958,3337329,3338423	an NAD dependent epimerase/dehydratase with flavanone 4-reductase activity
chr12	3321629	3326870	3321914	3325010	+	SNE8	Cre12.g497700.t1.2		3321629,3321910,3322396,3322753,3323122,3323500,3323778,3324058,3324534,3324926	3321740,3322159,3322494,3322883,3323335,3323593,3323890,3324217,3324635,3326870	Cinnamoyl-CoA reductase/flavanone 4-reductase, a NAD-dependent epimerase/dehydratase.  Related to Dihydrokaempferol 4-reductase (DFR); related to plant haem peroxidase that are aldehyde oxidases, flavonol/cinnamyl alcohol reductases
chr12	3317979	3321219	3318107	3320487	+	Cre12.g497750.t1.2	Cre12.g497750.t1.2		3317979,3318420,3318573,3318704,3319100,3319335,3319915,3320275	3318347,3318507,3318625,3318847,3319209,3319512,3320056,3321219	
chr12	3307949	3317850	3308046	3317514	+	Cre12.g497800.t1.1	Cre12.g497800.t1.1		3307949,3308269,3310064,3310535,3311380,3313397,3313608	3308133,3309927,3310441,3311257,3313274,3313466,3317850	null-allele mutant was isolated (PMID 29743196)
chr12	3307949	3317850	3308046	3317514	+	Cre12.g497800.t2.1	Cre12.g497800.t2.1		3307949,3308269,3310064,3310535,3311380,3313397,3313612	3308133,3309927,3310441,3311257,3313274,3313470,3317850	null-allele mutant was isolated (PMID 29743196)
chr12	3305498	3307836	3306060	3307709	-	Cre12.g497850.t1.2	Cre12.g497850.t1.2		3307456,3307251,3307040,3306729,3306358,3305498	3307836,3307311,3307106,3306803,3306425,3306187	
chr12	3296243	3305448	3296645	3304981	-	Cre12.g497900.t1.1	Cre12.g497900.t1.1		3305356,3305150,3304944,3304587,3303722,3303104,3302071,3301543,3301203,3300798,3300536,3300140,3299828,3299031,3298789,3298515,3298089,3297717,3297322,3296243	3305448,3305263,3305040,3304715,3304443,3303500,3302987,3301830,3301337,3300887,3300649,3300278,3299949,3299683,3298908,3298647,3298308,3297829,3297440,3297108	
chr12	3294029	3296240	3294539	3296131	+	Cre12.g497950.t1.2	Cre12.g497950.t1.2		3294029,3294483,3294796,3295665,3295971	3294355,3294659,3295448,3295826,3296240	
chr12	3289589	3293845	3289982	3292174	+	Cre12.g498000.t1.1	Cre12.g498000.t1.1		3289589,3290265,3290484,3290742,3291451,3291720	3290162,3290360,3290546,3291281,3291560,3293845	
chr12	3289589	3293845	3290888	3292174	+	Cre12.g498000.t2.1	Cre12.g498000.t2.1		3289589,3290265,3290484,3290742,3291451,3291720	3290162,3290360,3290546,3291281,3291560,3293845	
chr12	3283123	3289248	3283472	3289085	-	Cre12.g498050.t1.2	Cre12.g498050.t1.2		3288951,3288712,3288206,3287703,3287111,3286721,3286459,3286145,3285687,3285329,3284901,3284395,3284002,3283123	3289248,3288883,3288292,3287795,3287261,3286860,3286530,3286228,3285878,3285391,3285119,3284700,3284160,3283790	(CPSF subunit 3); (CPSF 73 kDa subunit)involved in maturation of 3' end of mRNA; contains an RNA-metabolising metallo-beta-lactamase domain
chr12	3280019	3283120	3280095	3281542	+	EIF3E	Cre12.g498100.t1.2		3280019,3280411	3280251,3283120	putative eIF3e eukaryotic translation initiation factor 3, subunit 6 (48kD)
chr12	3271294	3279858	3271914	3279718	-	Cre12.g498150.t1.2	Cre12.g498150.t1.2		3279674,3279252,3278819,3277773,3276956,3276425,3274828,3274260,3271294	3279858,3279380,3278986,3278611,3277651,3276820,3276222,3274606,3274128	
chr12	3268920	3271140	3269005	3270480	+	FAP128	Cre12.g498200.t1.2		3268920,3269166,3270007,3270351	3269068,3269327,3270123,3271140	Flagellar Associated Protein, found in the flagellar proteome
chr12	3266699	3268327	3266748	3268276	+	RPS17	Cre12.g498250.t1.2		3266699,3266930,3267179,3267819,3268147	3266751,3267091,3267235,3267887,3268327	Cytosolic 40S small ribosomal subunit protein S17
chr12	3264273	3266588	3264764	3266451	-	Cre12.g498300.t1.2	Cre12.g498300.t1.2		3266094,3265790,3265515,3265212,3264273	3266588,3265918,3265580,3265353,3265048	
chr12	3256390	3261568	3256729	3261503	-	SRE1	Cre12.g498350.t1.1		3261285,3261079,3260753,3260290,3259977,3259640,3259359,3258941,3258704,3258177,3257830,3257116,3256390	3261568,3261184,3260951,3260490,3260067,3259777,3259436,3259132,3258820,3258555,3258024,3257219,3256793	Putative mRNA splicing factor, similar to human RNA binding motif protein 25, arginine/serine-rich 16 (Suppressor of white-apricot homolog 2) (Clk4-associating SR-related protein)
chr12	3250579	3256380	3250922	3255502	+	Cre12.g498400.t1.1	Cre12.g498400.t1.1		3250579,3250919,3252067,3254587,3255013	3250775,3251912,3254439,3254868,3256380	
chr12	3247713	3250448	3248336	3250410	-	Cre12.g498450.t1.2	Cre12.g498450.t1.2		3249651,3247713	3250448,3249398	
chr12	3243769	3247710	3244019	3247392	+	DEG11	Cre12.g498500.t1.2		3243769,3244214,3244652,3244829,3245147,3245327,3245515,3245914,3246222,3246750,3247049,3247281	3244073,3244501,3244720,3244932,3245177,3245380,3245673,3246022,3246457,3246881,3247090,3247710	DegP-type protease, thylakoid lumen; one PDZ domain; similar to At DegP1; v5.5 model is truncated at N-term
chr12	3240181	3243608	3240578	3243578	-	CHLM	Cre12.g498550.t1.1		3243324,3243179,3242662,3242085,3241403,3240925,3240181	3243608,3243224,3242851,3242247,3241463,3241056,3240713	Magnesium protoporphyrin IX S-adenosyl methionine O-methyl transferase, chloroplast precursor (Magnesium-protoporphyrin IX methyltransferase) (PPMT); Magnesium-protoporphyrin O-methyltransferase (chlM) [PMID: 12828371; PMID: 12489983; PMID: 4436384]; ChloroP 1.1 predicts chloroplast location
chr12	3236189	3240170	3236293	3239280	+	EEF1A1	Cre12.g498600.t1.2		3236189,3236858,3237144,3237329,3237826,3238092,3238533	3236323,3236939,3237183,3237573,3237941,3238340,3240170	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr12	3229809	3235415	3231249	3233921	+	ALK3	Cre12.g498650.t1.2		3229809,3231102,3231418,3231695,3233105	3230598,3231298,3231480,3232923,3235415	
chr12	3226229	3228555	3226449	3227894	+	CPLD13	Cre12.g498700.t1.2		3226229,3226881,3227242,3227741	3226530,3226997,3227349,3228555	
chr12	3220124	3226108	3221873	3226081	-	LIP2	Cre12.g498750.t1.1		3225966,3225563,3225062,3223603,3223118,3222774,3222438,3222142,3220124	3226108,3225823,3225192,3224262,3223336,3222819,3222548,3222259,3221940	related to gastric ligase
chr12	3214189	3220100	3214650	3219525	+	Cre12.g498800.t1.1	Cre12.g498800.t1.1		3214189,3214583,3217188,3217904,3218327,3218570,3218850	3214335,3217062,3217759,3218114,3218426,3218682,3220100	
chr12	3209558	3213341	3209591	3212415	+	CEP12	Cre12.g498850.t1.2		3209558,3209822,3210357,3210682,3210875,3211193,3211433,3211664,3211952,3212243	3209743,3209882,3210503,3210707,3211007,3211294,3211511,3211784,3212074,3213341	Cysteine-type endopeptidase, papain type
chr12	3205749	3209510	3206101	3208800	+	RPS7	Cre12.g498900.t1.2		3205749,3206088,3206366,3206605,3207032,3208288,3208756	3205994,3206179,3206485,3206775,3207124,3208366,3209510	Cytosolic 40S small ribosomal subunit protein S7
chr12	3202679	3205487	3202764	3205133	+	Cre12.g498950.t1.2	Cre12.g498950.t1.2		3202679,3203014,3203250,3203543,3203973,3204438,3204682,3205051	3202888,3203045,3203311,3203637,3204119,3204497,3204802,3205487	
chr12	3200567	3202535	3201160	3202326	-	Cre12.g499000.t1.2	Cre12.g499000.t1.2		3202068,3201787,3201415,3200567	3202535,3201954,3201489,3201241	
chr12	3199783	3200508	3199999	3200355	-	CSB44	Cre12.g499050.t1.2		3200238,3199783	3200508,3200122	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	3194669	3199723	3194767	3199316	+	Cre12.g499100.t1.1	Cre12.g499100.t1.1		3194669,3195193,3195453,3195691,3196263,3196602,3196976,3197339,3197705,3198025,3198375,3199123,3199250	3195013,3195330,3195496,3195967,3196393,3196749,3197212,3197494,3197887,3198207,3198947,3199152,3199723	
chr12	3187519	3191808	3188244	3191589	-	Cre12.g499150.t1.1	Cre12.g499150.t1.1		3191420,3191037,3190062,3189246,3188846,3187519	3191808,3191087,3190103,3189287,3188957,3188635	
chr12	3187519	3191808	3188244	3191589	-	Cre12.g499150.t2.1	Cre12.g499150.t2.1		3191420,3191037,3189246,3188846,3187519	3191808,3191087,3189287,3188957,3188635	
chr12	3191979	3193350	3192567	3193113	+	Cre12.g499152.t1.1	Cre12.g499152.t1.1		3191979,3192867	3192669,3193350	
chr12	3181489	3183078	3182186	3182826	-	Cre12.g499200.t1.2	Cre12.g499200.t1.2		3182788,3181489	3183078,3182577	
chr12	3183133	3184058	3183379	3183902	-	Cre12.g499204.t1.1	Cre12.g499204.t1.1		3183508,3183133	3184058,3183379	
chr12	3184123	3186108	3184182	3186079	-	Cre12.g499205.t1.1	Cre12.g499205.t1.1		3186005,3185578,3185049,3184123	3186108,3185888,3185452,3184839	
chr12	3184123	3186198	3184182	3186123	-	Cre12.g499205.t2.1	Cre12.g499205.t2.1		3186111,3185578,3185049,3184123	3186198,3185875,3185452,3184839	
chr12	3175679	3181483	3176718	3180052	+	PDE10	Cre12.g499250.t1.1		3175679,3175956,3176323,3176591,3176922,3177149,3177496,3178014,3178184,3178382,3178644,3178988,3179232,3179519,3179712	3175850,3176064,3176366,3176742,3176976,3177309,3177885,3178082,3178272,3178541,3178841,3179130,3179376,3179577,3181483	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus
chr12	3169556	3175558	3170825	3175457	-	PDE31	Cre12.g499300.t1.2		3175389,3175093,3174754,3174481,3174274,3174071,3173648,3172967,3172719,3172540,3172271,3171972,3171683,3171416,3171216,3169556	3175558,3175171,3174828,3174581,3174289,3174122,3173811,3173281,3172787,3172628,3172430,3172169,3171825,3171560,3171274,3171081	
chr12	1691341	1693812	1691405	1693367	+	Cre12.g499301.t1.1	Cre12.g499301.t1.1		1691341,1691855,1692174,1692442,1692853,1693100	1691687,1691977,1692242,1692522,1692930,1693812	
chr12	3162146	3165555	3162243	3165113	+	EFH7	Cre12.g499350.t1.2		3162146,3162678,3162939,3163114,3163411,3163680,3163948,3164284,3164613,3165029	3162574,3162806,3163003,3163234,3163510,3163782,3164070,3164403,3164792,3165555	
chr12	3165936	3167626	3166058	3166224	+	Cre12.g499352.t1.1	Cre12.g499352.t1.1		3165936	3167626	
chr12	3159462	3162099	3159683	3161592	+	CYN18-2	Cre12.g499400.t1.2		3159462,3160077,3160376,3160708,3161059,3161482	3159760,3160131,3160408,3160851,3161113,3162099	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; cytosolic; similar to AtCYP18-2 and AtCYP19-2
chr12	3155676	3159125	3155710	3158756	+	Cre12.g499450.t1.1	Cre12.g499450.t1.1		3155676,3156017,3156407,3156685,3157320,3157998,3158190	3155869,3156236,3156564,3157026,3157863,3158054,3159125	
chr12	3152156	3155627	3152251	3155485	+	Cre12.g499451.t1.2	Cre12.g499451.t1.2		3152156,3152420,3152961,3153386,3153728,3154147,3154539	3152323,3152652,3153106,3153545,3153878,3154274,3155627	
chr12	3146584	3151975	3147233	3151820	-	SAC3	Cre12.g499500.t1.1		3151745,3151452,3151073,3150859,3150445,3150205,3149593,3148254,3147861,3147554,3146584	3151975,3151553,3151138,3150867,3150600,3150297,3149694,3148367,3148067,3147669,3147267	Sulfur acclimation protein 3, Snf1-like serine/threonine kinase; positive and negative regulator of sulfur deficiency responses; NCBI accessions AF100162 (mRNA) and AAC98509 (protein) [PMID: 10368187]
chr12	3144177	3146317	3144187	3145138	+	Cre12.g499550.t1.2	Cre12.g499550.t1.2		3144177,3144385,3144700	3144304,3144567,3146317	
chr12	3144177	3146317	3144187	3144842	+	Cre12.g499550.t2.1	Cre12.g499550.t2.1		3144177,3144385,3144809	3144304,3144567,3146317	
chr12	3138710	3142205	3139035	3142051	-	CSD5	Cre12.g499600.t1.1		3141961,3141547,3141006,3140749,3140533,3140176,3139640,3138710	3142205,3141702,3141342,3140845,3140622,3140306,3139986,3139368	Sequence similarity to group-II cysteine desulfurase, but conserved active site is lacking.
chr12	3142480	3144035	3143074	3144002	-	Cre12.g499601.t1.1	Cre12.g499601.t1.1		3143964,3143778,3142480	3144035,3143814,3143509	
chr12	3135936	3138707	3136365	3138119	+	Cre12.g499650.t1.2	Cre12.g499650.t1.2		3135936,3136770,3137332,3137601,3137960	3136470,3137020,3137443,3137663,3138707	
chr12	3131523	3135825	3132658	3135262	-	Cre12.g499700.t1.1	Cre12.g499700.t1.1		3135152,3134997,3134722,3134213,3133504,3131523	3135825,3135057,3134859,3134529,3134063,3133308	Putative MATE efflux family protein.  Previously annotated as MFT3
chr12	3126071	3131115	3127051	3131052	-	Cre12.g499750.t1.1	Cre12.g499750.t1.1		3130913,3130696,3130548,3130422,3129047,3128146,3126071	3131115,3130771,3130607,3130479,3130256,3128926,3127889	
chr12	3124766	3125947	3124948	3125306	+	Cre12.g499800.t1.2	Cre12.g499800.t1.2		3124766,3125219	3125149,3125947	
chr12	3120020	3124665	3121316	3124476	-	CNK7	Cre12.g499850.t1.1		3124382,3124220,3123868,3123240,3122914,3122504,3122172,3121876,3120020	3124665,3124299,3123954,3123317,3123081,3122647,3122210,3121974,3121733	similar to serine/threonine-protein kinase Nek7 [Homo sapiens]
chr12	3115276	3118275	3115408	3117628	+	VPS29	Cre12.g499900.t1.2		3115276,3115901,3116348,3116745,3117247,3117553	3115540,3115987,3116395,3116837,3117378,3118275	Expressed Protein. Similar to VPS29, a component of Retromer Coat complex involved in endosomal to Golgi trafficking.
chr12	3119020	3119705	3119313	3119590	-	Cre12.g499902.t1.1	Cre12.g499902.t1.1		3119020	3119705	
chr12	3111000	3115155	3111660	3115077	-	CPL18	Cre12.g499950.t1.1		3114946,3114591,3114042,3113663,3113364,3112600,3112286,3111870,3111000	3115155,3114728,3114255,3113784,3113438,3113203,3112387,3111932,3111708	Conserved in the Plant Lineage
chr12	3106526	3110997	3106801	3110591	+	Cre12.g500000.t1.1	Cre12.g500000.t1.1		3106526,3107083,3107482,3108396,3108959	3106837,3107269,3108111,3108688,3110997	
chr12	3103176	3105009	3103338	3104559	+	Cre12.g500050.t1.2	Cre12.g500050.t1.2		3103176,3103577,3104022,3104490	3103362,3103717,3104063,3105009	
chr12	3099740	3103045	3100192	3102891	-	Cre12.g500100.t1.2	Cre12.g500100.t1.2		3102420,3101993,3101289,3100975,3100578,3099740	3103045,3102085,3101699,3101084,3100740,3100378	
chr12	3093098	3099731	3093149	3099187	+	ALD5	Cre12.g500150.t1.1		3093098,3093374,3093971,3094489,3094955,3095314,3095695,3096071,3096499,3097049,3097409,3097833,3098227,3098530,3098711,3099055	3093250,3093443,3094150,3094578,3095007,3095416,3095832,3096160,3096593,3097130,3097494,3097919,3098332,3098592,3098839,3099731	
chr12	3087516	3092804	3087736	3091853	+	MPA2	Cre12.g500200.t1.1		3087516,3088086,3088471,3088832,3089203,3089486,3089859,3090469,3090808,3091193,3091496	3087942,3088215,3088548,3088983,3089273,3089660,3090239,3090546,3091003,3091282,3092804	
chr12	3083080	3086835	3083206	3086558	-	Cre12.g500250.t1.2	Cre12.g500250.t1.2		3086321,3086034,3085400,3085126,3084853,3084583,3084207,3083907,3083601,3083080	3086835,3086147,3085492,3085197,3084930,3084669,3084347,3084008,3083693,3083278	
chr12	3078916	3083077	3078983	3082064	+	Cre12.g500300.t1.1	Cre12.g500300.t1.1		3078916,3082014	3080655,3083077	
chr12	3073090	3078655	3073579	3078382	-	Cre12.g500350.t1.2	Cre12.g500350.t1.2		3078185,3077649,3077023,3076621,3076138,3075674,3075283,3074558,3073090	3078655,3077748,3077148,3076705,3076293,3075792,3075406,3074964,3074281	
chr12	3066642	3073017	3066832	3072433	+	Cre12.g500400.t1.2	Cre12.g500400.t1.2		3066642,3067036,3067175,3067587,3067795,3068564,3068893,3069373,3069728,3070386,3070937,3071353,3071845,3072299	3066943,3067070,3067470,3067642,3068367,3068637,3069085,3069552,3069910,3070652,3071129,3071526,3072021,3073017	
chr12	3057596	3066497	3057863	3065726	+	TPD1	Cre12.g500450.t1.1		3057596,3058698,3059133,3059495,3059923,3060338,3060588,3061244,3061732,3062213,3062589,3063224,3063623,3064092,3064538,3065321,3065678	3058322,3058777,3059200,3059624,3060031,3060391,3060876,3061421,3061865,3062247,3062753,3063422,3063778,3064174,3064893,3065426,3066497	Cleaves 2',5'-phosphodiester bond linking adenosines of the 5'-triphosphorylated oligoadenylates.  Part of the ?2-5A? system involved in anti-viral defense in metazoans
chr12	3053904	3057455	3054456	3057368	-	SMT2	Cre12.g500500.t1.1		3056789,3056561,3055975,3055636,3055245,3054855,3053904	3057455,3056674,3056124,3055739,3055298,3054942,3054585	
chr12	3053904	3057455	3054456	3057368	-	SMT1	Cre12.g500500.t2.1		3056789,3056561,3055975,3055636,3054855,3053904	3057455,3056674,3056124,3055739,3054942,3054585	
chr12	3048596	3053837	3049072	3052538	+	Cre12.g500550.t1.2	Cre12.g500550.t1.2		3048596,3049352,3050110,3050715,3051176,3051603	3049141,3049921,3050533,3051038,3051370,3053837	
chr12	3046974	3048526	3047103	3047634	+	VMA21	Cre12.g500600.t1.2		3046974,3047213,3047349,3047550	3047145,3047264,3047434,3048526	VMA21 is localised in the ER where it is needed as an accessory factor for assembly of the V component of the vacuolar ATPase
chr12	3039796	3046927	3040098	3046670	+	RNB2	Cre12.g500650.t1.2		3039796,3041218,3041472,3041903,3042245,3042645,3043033,3043506,3044063,3044564,3044957,3045378,3045892,3046427	3040958,3041278,3041567,3042056,3042366,3042857,3043290,3043814,3044331,3044754,3045152,3045550,3045998,3046927	RNase II,  RNase B family protein, 3'-5' exoribonuclease, dis3-like, RNB, Rrp44, ribonuclease II
chr12	3036510	3039675	3036865	3039515	-	LCL2	Cre12.g500700.t1.1		3039477,3038932,3037802,3037378,3036510	3039675,3039271,3038628,3037483,3036943	
chr12	3028900	3036355	3029672	3036270	-	Cre12.g500715.t1.2	Cre12.g500715.t1.2		3036129,3035739,3035274,3033983,3033402,3033034,3032124,3031758,3031376,3030936,3030153,3028900	3036355,3035981,3035375,3035060,3033534,3033178,3032767,3031906,3031516,3031208,3030649,3029855	
chr12	3026417	3028845	3027005	3028679	-	CSB45	Cre12.g500750.t1.2		3028627,3027502,3026417	3028845,3028450,3027005	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	3016410	3025505	3018556	3024726	-	Cre12.g500850.t1.1	Cre12.g500850.t1.1		3024676,3024204,3023748,3023524,3022196,3021891,3016410	3025505,3024235,3023794,3023580,3023306,3022054,3021634	
chr12	3008176	3015917	3008381	3014390	+	Cre12.g500900.t1.1	Cre12.g500900.t1.1		3008176,3008491,3009282,3010425,3011027,3011514,3012227	3008417,3008618,3009987,3010597,3011168,3011729,3015917	
chr12	3002819	3007356	3003367	3007234	-	CLPP4	Cre12.g500950.t1.2		3006894,3006547,3004981,3004616,3002819	3007356,3006761,3005187,3004754,3003504	ts-lethal mutant was isolated (PMID 29743196)
chr12	2998531	3002746	3000291	3002271	-	Cre12.g501000.t1.1	Cre12.g501000.t1.1		3002090,3001268,2998531	3002746,3001719,3000567	
chr12	2991911	2998426	2992354	2998257	-	ALD6	Cre12.g501050.t1.2		2998143,2997631,2997315,2996557,2996149,2995878,2995517,2995259,2994731,2994355,2993875,2993407,2992975,2992687,2991911	2998426,2997711,2997464,2996730,2996277,2995968,2995605,2995311,2994821,2994467,2994028,2993577,2993054,2992789,2992486	
chr12	2986261	2991856	2986776	2991641	-	Cre12.g501100.t1.2	Cre12.g501100.t1.2		2991167,2990756,2990177,2989747,2989458,2989143,2988807,2988085,2987696,2987168,2986261	2991856,2990852,2990319,2989881,2989513,2989218,2988893,2988664,2987767,2987484,2986905	tRNA methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to position 5 of the uridine residue at position 54 of tRNAs
chr12	2980097	2986200	2980749	2984286	+	MLT2	Cre12.g501150.t1.2		2980097,2980714,2981094,2981857,2983000	2980597,2980782,2981724,2982846,2986200	low-complexity protein required for proper eyespot localization; mutant shows numerous eyspeots, sometimes in posterior half of the cell, and lacks MLT1; MLT2 is linked to MLT1
chr12	2977737	2979915	2977892	2978718	+	SKP1	Cre12.g501200.t1.2		2977737,2978323,2978655	2978192,2978433,2979915	similar to Skp1; Matsuo et al.'s (2008) roc8 (rhythm of chloroplast) circadian rhythm mutant locus maps here
chr12	2974217	2977147	2974433	2976361	+	Cre12.g501250.t1.1	Cre12.g501250.t1.1		2974217,2974558,2974752,2975455	2974460,2974629,2975282,2977147	
chr12	2966301	2969566	2966875	2969510	-	Cre12.g501350.t1.2	Cre12.g501350.t1.2		2969393,2968797,2967810,2967558,2967295,2966301	2969566,2969258,2967882,2967661,2967385,2967033	
chr12	2972097	2974169	2972158	2973395	+	Cre12.g501351.t1.1	Cre12.g501351.t1.1		2972097,2972538,2972962,2973265	2972285,2972751,2973030,2974169	
chr12	2964857	2966282	2965014	2965337	+	CSB46	Cre12.g501400.t1.1		2964857,2964988,2965214	2964869,2965098,2966282	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	2952277	2964748	2952375	2964158	+	MLO2	Cre12.g501403.t1.2		2952277,2952626,2953018,2953859,2954270,2954839,2955422,2955771,2956092,2956475,2958208,2959940,2960609,2961151,2961811,2962495,2962934,2963288,2963444	2952555,2952670,2953533,2953935,2954396,2954942,2955482,2955878,2956212,2957985,2959572,2960133,2960782,2961263,2961966,2962566,2963026,2963340,2964748	Integral membrane protein, plant GCPR-like Mlo family; contains a C-terminal EF-hand domain pair
chr12	2947787	2951250	2948219	2950079	+	SDIR1	Cre12.g501450.t1.2		2947787,2948512,2948752,2948964,2949435	2948241,2948561,2948835,2949177,2951250	contains a TM and C-terminal RING domain, involved in abscisic acid signaling in plants
chr12	2945017	2947739	2945275	2945618	+	Cre12.g501550.t1.2	Cre12.g501550.t1.2		2945017	2947739	
chr12	2939321	2944866	2941316	2944754	-	Cre12.g501600.t1.2	Cre12.g501600.t1.2		2944704,2944570,2943528,2943217,2939321	2944866,2944627,2944415,2943331,2942914	Basic-leucine zipper (bZIP) transcription factor; may bind cAMP response element; null-allele mutant was isolated (PMID 29743196)
chr12	2930637	2932971	2931956	2932344	+	Cre12.g501700.t1.1	Cre12.g501700.t1.1		2930637,2931549,2931774	2931430,2931659,2932971	
chr12	2933197	2936448	2933625	2936109	+	Cre12.g501702.t1.1	Cre12.g501702.t1.1		2933197,2935041,2935566	2934738,2935445,2936448	
chr12	2936497	2939318	2936692	2939127	+	Cre12.g501703.t1.1	Cre12.g501703.t1.1		2936497,2938161	2938039,2939318	
chr12	3491900	3493291	3492170	3493178	+	Cre12.g501717.t1.1	Cre12.g501717.t1.1		3491900,3492744	3492195,3493291	
chr12	2921127	2925818	2921795	2924606	+	Cre12.g501750.t1.1	Cre12.g501750.t1.1		2921127,2921398,2921729,2921950,2923548,2924381	2921291,2921474,2921815,2923408,2924234,2925818	null-allele passenger mutation was isolated (PMID 29743196)
chr12	2927121	2930496	2927881	2930082	-	Cre12.g501752.t1.1	Cre12.g501752.t1.1		2930045,2929559,2929045,2928861,2928719,2928296,2927121	2930496,2929603,2929422,2928887,2928745,2928340,2928159	
chr12	2919372	2920986	2919758	2920879	-	Cre12.g501800.t1.2	Cre12.g501800.t1.2		2920792,2920609,2920093,2919372	2920986,2920678,2920190,2919896	
chr12	2911541	2918736	2912056	2918630	-	FFT1	Cre12.g501850.t1.1		2917959,2917627,2917117,2916705,2913845,2913542,2913137,2912687,2911541	2918736,2917792,2917426,2916908,2916519,2913679,2913270,2913009,2912520	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase
chr12	2901361	2911466	2902528	2911142	-	FFT2	Cre12.g501900.t1.2		2909817,2909435,2908873,2908434,2905818,2905400,2904938,2904536,2903777,2903379,2901361	2911466,2909594,2909020,2908637,2908248,2905535,2905075,2904669,2904424,2903455,2903109	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase
chr12	2895091	2901206	2895256	2900865	-	Cre12.g501950.t1.1	Cre12.g501950.t1.1		2900124,2899902,2899395,2898348,2898076,2897801,2896867,2896586,2895091	2901206,2899979,2899511,2899120,2898180,2897891,2897574,2896682,2896389	
chr12	2891331	2895036	2891767	2895033	-	FAP253	Cre12.g502000.t1.2		2894972,2894691,2893967,2892917,2892567,2892202,2891331	2895036,2894899,2894551,2893597,2892738,2892356,2891953	Flagellar Associated Protein, found in the flagellar proteome
chr12	2888817	2891328	2888874	2890946	+	Cre12.g502050.t1.2	Cre12.g502050.t1.2		2888817,2889027,2889145,2889521,2889835,2890181,2890476,2890783	2888919,2889076,2889250,2889583,2889898,2890245,2890642,2891328	
chr12	2885371	2888676	2886014	2888544	-	Cre12.g502100.t1.1	Cre12.g502100.t1.1		2887262,2886622,2885371	2888676,2886992,2886491	
chr12	2875271	2885316	2875825	2885279	-	Cre12.g502150.t1.2	Cre12.g502150.t1.2		2885182,2884845,2884529,2884153,2883776,2882395,2881704,2881382,2880921,2880203,2879810,2879493,2878563,2878032,2875271	2885316,2885035,2884648,2884281,2883964,2883484,2882195,2881503,2881061,2880511,2880002,2879634,2879356,2878332,2877815	
chr12	2866626	2875106	2869136	2874945	-	Cre12.g502179.t1.1	Cre12.g502179.t1.1		2874940,2866626	2875106,2874348	
chr12	2856687	2866436	2857100	2865919	-	Cre12.g502200.t1.2	Cre12.g502200.t1.2		2865829,2865593,2865317,2864089,2863704,2863199,2862679,2862005,2861593,2860928,2860270,2859770,2859337,2858811,2858248,2857769,2856687	2866436,2865700,2865400,2864277,2863787,2863294,2862762,2862231,2861794,2861092,2860438,2859870,2859431,2859048,2858398,2857881,2857391	
chr12	2847457	2850836	2847590	2850331	+	PLAP4	Cre12.g502250.t1.2		2847457,2848127,2848612,2849041,2849617,2849999	2847873,2848297,2848709,2849185,2849733,2850836	PAP-fibrillin family protein
chr12	2850841	2856626	2851435	2856475	-	Cre12.g502251.t1.1	Cre12.g502251.t1.1		2856461,2856203,2855269,2855019,2854688,2850841	2856626,2856267,2856087,2855127,2854811,2854522	
chr12	2845723	2847346	2846206	2847219	-	Cre12.g502300.t1.2	Cre12.g502300.t1.2		2846977,2846738,2845723	2847346,2846831,2846305	
chr12	2838717	2845718	2838825	2845075	+	HEL50	Cre12.g502350.t1.1		2838717,2839144,2839543,2839934,2840227,2840376,2840795,2841040,2841287,2841595,2841963,2842262,2842411,2843051,2843414,2843746,2844501	2838930,2839331,2839705,2840064,2840275,2840447,2840875,2841126,2841393,2841721,2842064,2842317,2842765,2843155,2843496,2844201,2845718	
chr12	2834924	2838576	2835360	2838346	-	Cre12.g502400.t1.2	Cre12.g502400.t1.2		2838271,2838160,2837791,2837427,2837219,2836981,2836646,2836272,2835918,2834924	2838576,2838201,2837897,2837705,2837312,2837043,2836870,2836470,2836114,2835690	
chr12	2834924	2838576	2835360	2838346	-	Cre12.g502400.t2.1	Cre12.g502400.t2.1		2838271,2837791,2837427,2837219,2836981,2836646,2836272,2835918,2834924	2838576,2837897,2837705,2837312,2837043,2836870,2836470,2836114,2835690	
chr12	2830337	2834918	2830580	2834432	+	ELG8	Cre12.g502450.t1.1		2830337,2830733,2830980,2831237,2831539,2831884,2832098,2832334,2832616,2832959,2833126,2833256,2833548,2833779,2833972,2834245	2830670,2830845,2831152,2831375,2831632,2831984,2832158,2832444,2832831,2833041,2833168,2833411,2833639,2833880,2834151,2834918	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr12	2825587	2830288	2825694	2830022	+	ELG34	Cre12.g502500.t1.2		2825587,2825849,2826087,2826420,2826694,2827049,2827349,2827606,2828039,2828407,2828614,2828804,2829105,2829306,2829511,2829835	2825775,2825961,2826259,2826558,2826787,2827149,2827409,2827716,2828254,2828489,2828656,2828959,2829196,2829407,2829690,2830288	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr12	2814007	2825538	2814187	2825139	+	Cre12.g502550.t1.1	Cre12.g502550.t1.1		2814007,2818331,2820111,2821111,2821384,2821609,2822812,2823067,2823843,2824569	2818009,2819851,2820933,2821166,2821476,2822579,2822902,2823702,2824379,2825538	
chr12	2807687	2813938	2807921	2812755	+	SLT1	Cre12.g502600.t1.2		2807687,2808280,2808724,2809254,2809633,2810006,2810333,2810547,2810945,2811401,2811908,2812213	2808000,2808556,2808944,2809467,2809837,2810174,2810424,2810699,2811171,2811732,2812042,2813938	SAC1-like transporter 1, putative sodium/sulfate co-transporter, transcript is up-regulated during sulfur-deprivation; related to the SAC1 protein which regulates sulfur-deficiency responses [PMID: 16307308]
chr12	2804987	2807528	2805015	2807103	+	Cre12.g502650.t1.1	Cre12.g502650.t1.1		2804987,2805081	2805027,2807528	
chr12	2803207	2804908	2803589	2803908	+	Cre12.g502678.t1.2	Cre12.g502678.t1.2		2803207	2804908	
chr12	2795687	2803128	2795812	2802677	+	Cre12.g502700.t1.2	Cre12.g502700.t1.2		2795687,2795921,2796022,2796330,2796510,2796814,2797252,2797699,2798175,2798516,2798829,2799143,2799332,2799632,2800067,2800384,2800929,2801228,2801618,2802064,2802524	2795851,2795956,2796198,2796395,2796659,2797059,2797445,2797939,2798330,2798691,2799048,2799196,2799442,2799730,2800231,2800758,2801054,2801359,2801793,2802247,2803128	
chr12	2793837	2795479	2793900	2794877	+	PFD6	Cre12.g502750.t1.2		2793837,2794049,2794373,2794826	2793970,2794119,2794558,2795479	alpha-type subunit of molecular chaperone Prefoldin (PMID: 11599560); has two coiled-coil domains separated by a beta-sheet; stabilizes polypeptide chains prior to folding within CCT chaperonin, in particular tubulin
chr12	2790014	2793686	2790271	2793533	-	Cre12.g502800.t1.2	Cre12.g502800.t1.2		2793477,2792715,2792351,2791979,2791740,2791278,2790954,2790483,2790014	2793686,2793132,2792537,2792166,2791814,2791545,2791092,2790690,2790364	
chr12	2780871	2783506	2781827	2783420	-	Cre12.g502900.t1.2	Cre12.g502900.t1.2		2783116,2780871	2783506,2782939	
chr12	2784041	2789966	2784346	2789896	-	Cre12.g502901.t1.1	Cre12.g502901.t1.1		2789829,2789532,2789344,2789172,2788807,2788472,2788067,2787815,2787648,2787353,2786946,2785476,2785160,2784912,2784041	2789966,2789733,2789416,2789268,2789065,2788660,2788326,2787976,2787728,2787545,2787236,2786798,2785364,2784994,2784812	
chr12	2778326	2780824	2778432	2780509	+	CPL15	Cre12.g502950.t1.1		2778326,2778775,2779157,2779411,2779681,2780006,2780306	2778504,2778941,2779235,2779477,2779787,2780129,2780824	Conserved in the Plant Lineage
chr12	2773700	2778186	2774370	2778006	-	GPT3	Cre12.g503000.t1.2		2777916,2777760,2777421,2777036,2776712,2776241,2775752,2775299,2774837,2773700	2778186,2777830,2777550,2777144,2776752,2776453,2775973,2775509,2775063,2774595	possible glycerol-3-phosphate transporter
chr12	2768891	2773536	2769290	2773467	-	Cre12.g503050.t1.1	Cre12.g503050.t1.1		2773458,2773130,2772111,2771694,2771259,2770830,2770107,2769568,2768891	2773536,2773369,2772925,2771953,2771464,2770974,2770708,2769924,2769425	
chr12	2763257	2768248	2763619	2766999	+	Cre12.g503100.t1.1	Cre12.g503100.t1.1		2763257,2763773,2763995,2764248	2763708,2763821,2764108,2768248	
chr12	2754844	2763066	2755321	2762577	-	Cre12.g503150.t1.1	Cre12.g503150.t1.1		2761730,2761289,2760860,2759442,2758931,2758629,2757764,2757414,2757132,2756529,2756233,2755863,2754844	2763066,2761474,2761045,2760697,2759179,2758718,2758471,2757525,2757272,2756862,2756332,2756017,2755568	
chr12	2751051	2754026	2752107	2753943	-	Cre12.g503200.t1.2	Cre12.g503200.t1.2		2753642,2751051	2754026,2753465	
chr12	2747747	2751048	2747882	2750421	+	Cre12.g503250.t1.2	Cre12.g503250.t1.2		2747747,2748629,2748880,2749346,2749821	2748396,2748711,2749038,2749471,2751048	
chr12	2740427	2747566	2740900	2746889	+	Cre12.g503300.t1.2	Cre12.g503300.t1.2		2740427,2741329,2741832,2742587,2743098,2743641,2744267,2744636,2744979,2745824,2746414,2746814	2741106,2741407,2741952,2742666,2743273,2743790,2744431,2744850,2745283,2746032,2746588,2747566	
chr12	2736593	2740096	2737502	2739832	-	Cre12.g503350.t1.2	Cre12.g503350.t1.2		2739766,2739500,2739156,2738843,2738471,2738294,2738100,2737781,2736593	2740096,2739562,2739301,2738933,2738563,2738332,2738171,2737839,2737593	
chr12	2733577	2736588	2733738	2736421	+	Cre12.g503400.t1.2	Cre12.g503400.t1.2		2733577,2733872,2734325,2734704,2735065,2735514,2736376	2733792,2734124,2734404,2734819,2735322,2736111,2736588	similar to pre-mRNA splicing factor PRP38 family protein
chr12	2729687	2733528	2729823	2732669	+	Cre12.g503450.t1.2	Cre12.g503450.t1.2		2729687,2730022,2730442,2730715,2731042,2731398,2731769,2732089,2732460	2729940,2730159,2730485,2730817,2731182,2731562,2731821,2732198,2733528	
chr12	2722220	2729613	2722426	2729141	+	Cre12.g503500.t1.1	Cre12.g503500.t1.1		2722220,2722695,2723067,2723348,2723726,2724156,2724551,2725124,2725622,2726035,2726368,2726610,2726939,2727406,2728023,2728552,2728988	2722607,2722817,2723162,2723435,2723897,2724303,2724711,2725189,2725768,2726160,2726445,2726774,2727119,2727721,2728290,2728749,2729613	Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145]
chr12	2717087	2719227	2717137	2718799	+	MEC1	Cre12.g503550.t1.2		2717087,2717251,2717365,2717628,2717808,2718065,2718314,2718706	2717185,2717291,2717525,2717690,2717875,2718151,2718376,2719227	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (MECDP-synthase) (MECPS) (ispF) (ygbB)
chr12	2714011	2716986	2714437	2716798	-	Cre12.g503600.t1.2	Cre12.g503600.t1.2		2716654,2716314,2715801,2715492,2715050,2714706,2714011	2716986,2716499,2715938,2715575,2715220,2714759,2714521	
chr12	2710647	2714008	2710705	2713465	+	Cre12.g503650.t1.2	Cre12.g503650.t1.2		2710647,2710923,2711377,2711934,2712322,2712788,2713297	2710844,2711017,2711521,2711989,2712438,2712994,2714008	
chr12	2708327	2710389	2708362	2710199	+	Cre12.g503700.t1.2	Cre12.g503700.t1.2		2708327,2708771,2709178,2709510,2710034	2708495,2708935,2709279,2709718,2710389	
chr12	2699451	2708176	2700393	2708130	-	FMO14	Cre12.g503750.t1.1		2706918,2706443,2705995,2705642,2705229,2704579,2704144,2703559,2703065,2702755,2702079,2701714,2701042,2700680,2699451	2708176,2706611,2706089,2705736,2705568,2704754,2704275,2703937,2703262,2702868,2702250,2701947,2701371,2700816,2700501	Flavin-containing monooxygenase,possibly a salicylate 1-monooxygenase
chr12	2693707	2699414	2693807	2699076	+	RMT5	Cre12.g503800.t1.1		2693707,2694290,2694683,2695093,2695758,2696287,2696634,2696856,2697267,2697704,2698094,2698409,2699016	2693965,2694395,2694806,2695180,2695893,2696433,2696705,2697063,2697434,2697804,2698214,2698689,2699414	SET domain-containing methyltransferase; Similar to At1g143 F7A19.12, F16A14.25; putative ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [EC:2.1.1.127].  ChromoDB SDG3415
chr12	2688631	2693576	2688799	2693240	-	ARL12	Cre12.g503850.t1.1		2693132,2692947,2692687,2692428,2692150,2691647,2691284,2691061,2690898,2690578,2690376,2690057,2688631	2693576,2693036,2692791,2692505,2692263,2691970,2691432,2691105,2690950,2690675,2690414,2690110,2689795	Hypothetical conserved protein. Similar to Arl2-type of small GTPase, but is greatly longer and not typical of ARLs, splicing is speculative.  Previously annotated as ARLP2 in GenBank
chr12	2687050	2688625	2687125	2687776	+	Cre12.g503900.t1.2	Cre12.g503900.t1.2		2687050,2687383,2687539,2687711	2687293,2687430,2687599,2688625	
chr12	2683047	2686699	2683188	2685938	+	Cre12.g503950.t1.2	Cre12.g503950.t1.2		2683047,2683876,2684264,2684637,2684845,2685105,2685331,2685522,2685862	2683408,2683967,2684379,2684689,2684888,2685188,2685381,2685616,2686699	
chr12	2678921	2682936	2679293	2682875	-	Cre12.g504000.t1.1	Cre12.g504000.t1.1		2682744,2682161,2681802,2681185,2680858,2680638,2680375,2679908,2678921	2682936,2682263,2681942,2681630,2680956,2680671,2680515,2680095,2679588	
chr12	2673287	2678918	2673590	2678011	+	LAG2	Cre12.g504050.t1.1		2673287,2673907,2674310,2674770,2675058,2675404,2675840,2676190,2676399,2676684,2677236	2673619,2674024,2674591,2674807,2675150,2675459,2675935,2676268,2676485,2676812,2678918	Related to longevity assurance protein; TRAM, LAG1 and CLN8 domain homology; possibly involved in ceramide synthesis
chr12	2668287	2672232	2668770	2672120	-	PHX20	Cre12.g504100.t1.1		2671955,2671471,2671053,2670686,2670383,2669869,2669376,2669099,2668287	2672232,2671581,2671130,2670778,2670495,2670045,2669513,2669171,2668863	Putative prolyl 4-hydroxylase similar to EGg Laying defective family member (egl-9) in C. elegans involved in hypoxia response
chr12	2665577	2668232	2665909	2668207	-	NIFU2	Cre12.g504150.t1.2		2668186,2667768,2667417,2667152,2666859,2666533,2666203,2665577	2668232,2668010,2667609,2667222,2666981,2666631,2666268,2665996	pfam01106, NifU-like domain; COG0694, Thioredoxin-like proteins and domains; similar to human HIRA-interacting protein 5 (CGI-33); possibly targeted to mitochondria
chr12	2665577	2668232	2665909	2668207	-	NIFU2	Cre12.g504150.t2.1		2668186,2667768,2667417,2667152,2666859,2666533,2665577	2668232,2668010,2667609,2667222,2666981,2666631,2665996	pfam01106, NifU-like domain; COG0694, Thioredoxin-like proteins and domains; similar to human HIRA-interacting protein 5 (CGI-33); possibly targeted to mitochondria
chr12	2662813	2665574	2662941	2665078	+	RPS23	Cre12.g504200.t1.2		2662813,2663019,2663243,2663924,2665009	2662946,2663174,2663369,2663995,2665574	Cytosolic 40S small ribosomal subunit protein S23
chr12	2653553	2662764	2653723	2660549	+	Cre12.g504250.t1.1	Cre12.g504250.t1.1		2653553,2654216,2654546,2654724,2655024,2655309,2655813,2656302,2657208,2658456,2658892,2659113,2659508,2659781,2660495	2654029,2654372,2654571,2654852,2655114,2655608,2656152,2656904,2658222,2658576,2658929,2659232,2659527,2660174,2662764	
chr12	2648333	2652244	2648951	2651742	+	Cre12.g504300.t1.1	Cre12.g504300.t1.1		2648333,2648569,2648736,2650055,2650640,2651108,2651459	2648500,2648631,2649785,2650436,2650827,2651337,2652244	
chr12	2652246	2653442	2652895	2653088	-	Cre12.g504302.t1.1	Cre12.g504302.t1.1		2652246	2653442	
chr12	2642677	2648211	2643840	2647998	-	Cre12.g504350.t1.2	Cre12.g504350.t1.2		2647870,2647496,2646995,2646476,2646101,2645228,2644985,2644542,2644129,2642677	2648211,2647595,2647161,2646593,2646186,2645328,2645028,2644673,2644200,2643897	
chr12	2634987	2642622	2635355	2642553	-	Cre12.g504400.t1.2	Cre12.g504400.t1.2		2642532,2641994,2641305,2640953,2640454,2639894,2639518,2639103,2638684,2638115,2637538,2636879,2636612,2634987	2642622,2642141,2641579,2641097,2640641,2640112,2639685,2639255,2638792,2638335,2637934,2637139,2636731,2636449	
chr12	2633777	2634632	2633917	2634482	-	Cre12.g504450.t1.2	Cre12.g504450.t1.2		2633777	2634632	
chr12	2633153	2633684	2633256	2633650	+	HTA15	Cre12.g504500.t1.2		2633153	2633684	replication linked H2A; histone gene cluster XV (type 34BA)
chr12	2632247	2632992	2632498	2632958	-	HTB15	Cre12.g504550.t1.2		2632247	2632992	replication linked H2B; histone gene cluster XV (type 34BA)
chr12	2630103	2630750	2630156	2630469	+	HFO15	Cre12.g504600.t1.2		2630103	2630750	replication linked H4; histone gene cluster XV (type 34BA)
chr12	2628864	2629912	2629456	2629865	-	HTR15	Cre12.g504650.t1.2		2628864	2629912	replication linked H3; histone gene cluster XV (type 34BA)
chr12	2626053	2627494	2626084	2626547	+	HTB16	Cre12.g504700.t1.2		2626053	2627494	replication linked H2B; histone gene cluster XVI (type 43BA)
chr12	2625167	2625922	2625390	2625784	-	HTA16	Cre12.g504750.t1.2		2625167	2625922	replication linked H2A; histone gene cluster XVI (type 43AB)
chr12	2623863	2624624	2623978	2624387	+	HTR16	Cre12.g504800.t1.2		2623863	2624624	replication linked H3; histone gene cluster XVI (type 43AB)
chr12	2623177	2623742	2623374	2623687	-	HFO16	Cre12.g504850.t1.2		2623177	2623742	replication linked H4; histone gene cluster XVI (type 43AB)
chr12	2618153	2623168	2618446	2622927	+	Cre12.g504900.t1.1	Cre12.g504900.t1.1		2618153,2618768,2619125,2619570,2620403,2620655	2618617,2618924,2619483,2620241,2620479,2623168	
chr12	2614733	2617906	2614841	2616627	+	UOX1	Cre12.g504950.t1.2		2614733,2615106,2615263,2615605,2615885,2616440	2615033,2615198,2615338,2615682,2616146,2617906	uricase; urate oxidase II (UO) [AF195795; PMID: 11469597]
chr12	2612227	2614512	2612299	2614483	-	Cre12.g505000.t1.2	Cre12.g505000.t1.2		2613797,2612227	2614512,2613578	
chr12	2605640	2611042	2606513	2610942	-	Cre12.g505050.t1.2	Cre12.g505050.t1.2		2610771,2610472,2609997,2609516,2609049,2608640,2608052,2605640	2611042,2610628,2610346,2609860,2609273,2608713,2608420,2607798	
chr12	2599451	2605592	2599997	2604975	-	Cre12.g505100.t1.1	Cre12.g505100.t1.1		2605357,2603353,2602669,2602206,2601876,2601599,2601212,2600854,2600445,2599451	2605592,2605300,2602805,2602270,2601964,2601661,2601305,2601010,2600605,2600147	null-allele mutant was isolated (PMID 29743196)
chr12	2587623	2595591	2588066	2594733	+	OPR52	Cre12.g505150.t1.1		2587623,2589593,2590421,2590827,2591220,2591470,2591866,2592780,2593263,2593602	2589329,2590198,2590574,2590933,2591275,2591566,2592545,2592927,2593385,2595591	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr12	2595597	2597382	2596362	2596868	-	Cre12.g505151.t1.1	Cre12.g505151.t1.1		2597215,2597067,2596868,2596601,2595597	2597382,2597090,2596897,2596684,2596467	
chr12	2582887	2587462	2583604	2587357	-	HEL51	Cre12.g505200.t1.2		2587197,2586606,2586235,2585689,2585256,2584910,2584466,2584029,2582887	2587462,2586757,2586384,2585784,2585351,2585035,2584690,2584149,2583819	
chr12	2579322	2582764	2579848	2582450	-	FAP288	Cre12.g505250.t1.2		2582380,2582221,2581810,2581363,2581002,2580604,2580283,2580085,2579322	2582764,2582296,2581942,2581695,2581220,2580819,2580443,2580172,2579932	EF hand-containing Flagellar Associated Protein, found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr12	2573590	2579272	2574054	2579195	-	Cre12.g505300.t1.2	Cre12.g505300.t1.2		2579165,2578967,2578262,2578070,2577364,2576799,2576433,2576080,2575762,2575491,2575167,2574844,2573590	2579272,2579098,2578877,2578165,2578000,2577099,2576684,2576256,2575857,2575622,2575331,2575018,2574683	
chr12	2567187	2573542	2568445	2573417	-	FAP10	Cre12.g505350.t1.2		2573315,2573095,2572841,2572255,2571813,2571430,2570801,2569955,2567187	2573542,2573250,2573009,2572538,2572006,2571593,2571052,2570652,2569810	Similar to membrane Ca2+Transporting ATPase
chr12	2562307	2566872	2562984	2566449	-	Cre12.g505400.t1.2	Cre12.g505400.t1.2		2566283,2566179,2565790,2565270,2564748,2564366,2564025,2563721,2563473,2562307	2566872,2566190,2565958,2565324,2565060,2564537,2564125,2563852,2563534,2563290	Related to platelet-activating factor acetylhydrolase, plasma/intracellular isoform II
chr12	2561343	2562264	2561390	2561703	+	HFO17	Cre12.g505450.t1.2		2561343	2562264	replication linked H4; histone gene cluster XVII (type 43AB)
chr12	2560407	2561162	2560688	2561097	-	HTR17	Cre12.g505500.t1.2		2560407	2561162	replication linked H3; histone gene cluster XVII (type 43AB)
chr12	2559433	2560150	2559499	2559893	+	HTA17	Cre12.g505550.t1.2		2559433	2560150	replication linked H2A; histone gene cluster XVII (type 43AB)
chr12	2557517	2559242	2558738	2559201	-	HTB17	Cre12.g505600.t1.2		2557517	2559242	replication linked H2B; histone gene cluster XVII (type 43AB)
chr12	2551293	2557467	2552159	2556251	+	Cre12.g505650.t1.2	Cre12.g505650.t1.2		2551293,2552126,2552941,2553281,2553665,2554210,2554541,2554884,2555462,2555756,2556155	2551635,2552564,2553080,2553491,2553859,2554314,2554750,2555309,2555512,2556001,2557467	
chr12	2546743	2549787	2547061	2549162	+	Cre12.g505700.t1.2	Cre12.g505700.t1.2		2546743,2547378,2547628,2547934,2548346,2548728	2547250,2547449,2547678,2548071,2548439,2549787	ChromDB GTF341; global transcription factor; TATA sequence-binding protein 2, TBP-2, similar to yeast SPT15
chr12	2545473	2546602	2545938	2546296	-	RPB9	Cre12.g505750.t1.2		2545473	2546602	RNA Polymerase II subunit 14.5 kD, putative [EC:2.7.7.6]
chr12	2536004	2545422	2536386	2545091	-	MSC6	Cre12.g505800.t1.1		2544518,2543899,2543404,2543152,2542772,2542449,2542081,2541454,2541211,2540803,2540359,2539872,2539632,2539353,2538985,2538604,2538172,2537658,2537360,2536937,2536716,2536004	2545422,2544243,2543555,2543232,2542958,2542550,2542203,2541853,2541269,2541063,2540606,2540051,2539680,2539442,2539104,2538675,2538267,2537764,2537490,2537033,2536794,2536554	protein of unknown function with mechanosensitive ion channel (MSC) like domain
chr12	2533877	2535922	2534508	2535887	-	CPN23	Cre12.g505850.t1.2		2535776,2535528,2535222,2534856,2533877	2535922,2535633,2535407,2535055,2534622	
chr12	2529627	2533742	2530434	2533470	-	TIM50	Cre12.g505900.t1.1		2533316,2532856,2532387,2532098,2531889,2531629,2531228,2531058,2530742,2529627	2533742,2533083,2532583,2532228,2531975,2531731,2531418,2531112,2530839,2530534	
chr12	2527087	2529562	2527623	2529261	-	TIM50	Cre12.g505950.t1.2		2528691,2528118,2527087	2529562,2528441,2527878	Subunit of 50 kDa of the mitochondrial import inner membrane translocase.
chr12	2523813	2527084	2524386	2526493	+	DIC2	Cre12.g506000.t1.2		2523813,2524236,2525470	2523994,2525067,2527084	IC2 component of outer arm dynein; WD repeat protein
chr12	2514787	2523692	2515366	2523527	-	Cre12.g506050.t1.1	Cre12.g506050.t1.1		2523464,2522920,2522390,2521840,2521517,2521265,2520947,2520596,2520201,2519817,2519476,2519116,2518714,2516448,2516202,2515949,2515685,2514787	2523692,2523063,2522537,2522000,2521669,2521336,2521057,2520676,2520353,2519999,2519680,2519225,2518814,2516697,2516285,2516013,2515815,2515455	
chr12	2514133	2514684	2514165	2514628	+	HTB18	Cre12.g506200.t1.2		2514133	2514684	replication linked H2B; histone gene cluster XVIII (type 43AB)
chr12	2512997	2513932	2513471	2513865	-	HTA18	Cre12.g506250.t1.2		2512997	2513932	replication linked H2A; histone gene cluster XVIII (type 43AB)
chr12	2511953	2512994	2512082	2512491	+	HTR18	Cre12.g506300.t1.2		2511953	2512994	replication linked H3; histone gene cluster XVIII (type 43AB)
chr12	2511367	2511822	2511476	2511789	-	HFO18	Cre12.g506350.t1.2		2511367	2511822	replication linked H4; histone gene cluster XVIII (type 43AB)
chr12	2505793	2511331	2505973	2510874	+	Cre12.g506400.t1.2	Cre12.g506400.t1.2		2505793,2506303,2506565,2506802,2507210,2507597,2507936,2508280,2508533,2508855,2509175,2509455,2509730,2510007,2510375	2506040,2506403,2506675,2506916,2507369,2507701,2508065,2508348,2508594,2508992,2509301,2509543,2509814,2510158,2511331	
chr12	2504343	2505126	2504395	2504708	+	HFO19	Cre12.g506450.t1.2		2504343	2505126	Replication linked H4; histone gene cluster XIX (type 43)
chr12	2502727	2504232	2503693	2504102	-	HTR19	Cre12.g506500.t1.2		2502727	2504232	Replication linked H3; histone gene cluster XIX (type 43)
chr12	2495673	2502684	2495845	2500655	+	Cre12.g506550.t1.1	Cre12.g506550.t1.1		2495673,2496072,2496781,2497100,2497831,2499431	2495875,2496559,2496898,2497207,2499189,2502684	
chr12	2486413	2495564	2486560	2494672	+	LPN1	Cre12.g506600.t1.2		2486413,2486785,2486986,2487118,2487645,2488432,2488770,2489156,2492481,2492989,2493294,2493664	2486659,2486914,2487048,2487198,2487884,2488562,2488976,2492199,2492670,2493128,2493429,2495564	possesses conserved N-terminal Lipin/Ned1/Smp2 (LNS2) domain
chr12	2474798	2484793	2474914	2484327	+	Cre12.g506650.t1.2	Cre12.g506650.t1.2		2474798,2475324,2476089,2477352,2477832,2478877,2479370,2479864,2481182,2481749,2482641,2483781	2475160,2475548,2476957,2477541,2478413,2479121,2479624,2480800,2481357,2482449,2483569,2484793	
chr12	2474798	2484793	2474914	2484327	+	Cre12.g506650.t2.1	Cre12.g506650.t2.1		2474798,2475324,2476089,2477352,2477832,2478877,2479370,2479864,2481182,2481749,2482641,2483781	2475160,2475548,2476957,2477541,2478413,2479121,2479624,2480800,2481357,2482437,2483569,2484793	
chr12	2472352	2474637	2472817	2474583	-	Cre12.g506700.t1.2	Cre12.g506700.t1.2		2474457,2473618,2472352	2474637,2474277,2473243	
chr12	2463822	2471857	2464946	2471163	-	PHC41	Cre12.g506750.t1.1		2471113,2470598,2470193,2469740,2469334,2468957,2467852,2467590,2467205,2466901,2466604,2466332,2465980,2465699,2465313,2463822	2471857,2470803,2470277,2469839,2469431,2468977,2467996,2467700,2467274,2466949,2466759,2466400,2466055,2465809,2465452,2465013	
chr12	2456582	2460167	2456937	2459951	-	Cre12.g506850.t1.2	Cre12.g506850.t1.2		2459843,2459486,2459113,2458637,2458346,2457935,2457400,2456582	2460167,2459558,2459155,2458715,2458427,2458014,2457498,2456967	
chr12	2460318	2463809	2460622	2462130	+	BBS3A	Cre12.g506851.t1.1		2460318,2460497,2460897,2461226,2461664,2462097	2460371,2460659,2460946,2461318,2461813,2463809	Hypothetical conserved protein. Similar to ARF-like small GTPases, similar to BBS3, an Arf-like gene in Chlamydomonas that is homologous to the causative gene of Bardet-Biedl syndrome 3 in humans
chr12	2450099	2456517	2450396	2456474	-	Cre12.g506900.t1.2	Cre12.g506900.t1.2		2456339,2454936,2454586,2453708,2453081,2452642,2451936,2450983,2450099	2456517,2456110,2454706,2454273,2453291,2452712,2452314,2451147,2450687	
chr12	2435938	2441145	2436082	2440608	+	FFT6	Cre12.g507000.t1.1		2435938,2437505,2437914,2438226,2438593,2438902,2439392	2437201,2437706,2437973,2438336,2438678,2439221,2441145	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase.  Possible fructan beta-fructosidase
chr12	2431358	2435479	2431479	2434355	+	Cre12.g507001.t1.2	Cre12.g507001.t1.2		2431358,2432311,2432989,2433879,2434278	2431992,2432617,2433479,2433957,2435479	
chr12	2428828	2431299	2429039	2431267	+	Cre12.g507002.t1.2	Cre12.g507002.t1.2		2428828,2429271,2429966,2430652,2431116	2429145,2429757,2430240,2430820,2431299	
chr12	2441338	2443289	2442127	2442778	+	Cre12.g507004.t1.1	Cre12.g507004.t1.1		2441338,2441979,2442648	2441457,2442579,2443289	
chr12	2443298	2445057	2443872	2444152	-	Cre12.g507005.t1.1	Cre12.g507005.t1.1		2444800,2443298	2445057,2444632	
chr12	2445158	2447319	2446105	2446726	+	Cre12.g507006.t1.1	Cre12.g507006.t1.1		2445158,2445464,2445844,2446243	2445378,2445577,2446141,2447319	
chr12	2447372	2449317	2448362	2449047	-	Cre12.g507007.t1.1	Cre12.g507007.t1.1		2448575,2448496,2447372	2449317,2448501,2448362	
chr12	2416952	2420107	2417625	2419949	-	Cre12.g507050.t1.2	Cre12.g507050.t1.2		2419911,2419416,2419123,2418584,2418138,2416952	2420107,2419570,2419172,2418693,2418238,2417753	
chr12	2420208	2428679	2420307	2428622	+	Cre12.g507051.t1.1	Cre12.g507051.t1.1		2420208,2421126,2421773,2422305,2422754,2423079,2423378,2424731,2425089,2425717,2426177,2426549,2426951	2420942,2421457,2421986,2422425,2422952,2423116,2423897,2424877,2425516,2425809,2426377,2426686,2428679	
chr12	2414092	2416557	2415847	2416325	-	Cre12.g507100.t1.1	Cre12.g507100.t1.1		2416273,2414092	2416557,2415972	
chr12	2408145	2412657	2409915	2412332	-	Cre12.g507150.t1.2	Cre12.g507150.t1.2		2412098,2411937,2411805,2411626,2411136,2410200,2408145	2412657,2412032,2411874,2411720,2411402,2410343,2409930	
chr12	2401258	2407789	2401296	2406356	+	Cre12.g507200.t1.1	Cre12.g507200.t1.1		2401258,2401744,2402457,2402795,2403136,2403685,2404614,2405269,2406149	2401420,2402156,2402543,2402854,2403511,2404078,2404971,2405994,2407789	
chr12	2389198	2400179	2389302	2400067	+	Cre12.g507250.t1.1	Cre12.g507250.t1.1		2389198,2389703,2390325,2390841,2391902,2392415,2392931,2393438,2394054,2394518,2394905,2395284,2395840,2396532,2396878,2397320,2398070,2398445,2398761,2399085	2389323,2390023,2390449,2391378,2392043,2392657,2393088,2393559,2394150,2394649,2395043,2395476,2396032,2396637,2396993,2397750,2398187,2398525,2398936,2400179	
chr12	2386682	2389067	2387739	2388985	-	LCI30	Cre12.g507300.t1.2		2388700,2388474,2386682	2389067,2388557,2388153	Hypothetical protein highly conserved with protein on chromosome 5 of Arabidopsis and also with mammalian protein;similar to putative TGF (transforming growth factor) beta inducible nuclear protein TINP1 [Oryza sativa (japonica cultivar-group)]; May be associated with the ribosome.; Low-CO2 inducible gene revealed by cDNA array analyses.
chr12	3493370	3493954	3493564	3493907	+	Cre12.g507333.t1.1	Cre12.g507333.t1.1		3493370	3493954	
chr12	2380078	2386569	2380497	2385772	+	Cre12.g507350.t1.2	Cre12.g507350.t1.2		2380078,2381161,2381611,2382258,2382945,2383369,2383730	2380728,2381465,2381866,2382707,2383082,2383450,2386569	
chr12	2380078	2386569	2380497	2385772	+	Cre12.g507350.t2.1	Cre12.g507350.t2.1		2380078,2381161,2381611,2382258,2382945,2383369,2383730	2380629,2381465,2381866,2382707,2383082,2383450,2386569	
chr12	2371392	2379925	2372307	2379815	-	CGL105	Cre12.g507400.t1.2		2379621,2379150,2378475,2377992,2377508,2377072,2376486,2376026,2375555,2375123,2374755,2374247,2373891,2373649,2373084,2372741,2371392	2379925,2379255,2378549,2378085,2377695,2377252,2376622,2376109,2375786,2375254,2374845,2374347,2374011,2373730,2373221,2372824,2372370	
chr12	2368042	2371267	2368813	2371055	-	SYP4	Cre12.g507450.t1.2		2370951,2370722,2370396,2369720,2369284,2368042	2371267,2370880,2370585,2369844,2369503,2368945	Involved in Trans-Golgi Network trafficking; belongs to Syntaxin16/Syx16/Tlg2/Syp4-family, (Qa.III.a)
chr12	2364170	2367887	2364894	2367516	-	Cre12.g507500.t1.1	Cre12.g507500.t1.1		2367495,2366994,2364170	2367887,2367119,2366763	
chr12	2328541	2335317	2329156	2335032	-	OPR3	Cre12.g507550.t1.1		2335000,2334808,2334554,2334050,2333390,2332636,2332260,2331739,2331353,2330840,2330410,2330004,2328541	2335317,2334931,2334604,2334129,2333542,2332732,2332441,2331983,2331464,2330993,2330607,2330123,2329720	A very degenerate OPR protein; conserved in Chlorophyceae
chr12	2328541	2335487	2329156	2335032	-	OPR121	Cre12.g507550.t2.1		2335000,2334808,2334554,2334050,2333390,2332636,2332260,2331739,2331353,2330840,2330410,2330004,2328541	2335487,2334931,2334604,2334129,2333542,2332732,2332441,2331983,2331464,2330993,2330607,2330123,2329720	A very degenerate OPR protein; conserved in Chlorophyceae
chr12	2339332	2345707	2342270	2345149	-	Cre12.g507556.t1.1	Cre12.g507556.t1.1		2345141,2343897,2343585,2339332	2345707,2344686,2343666,2343325	
chr12	2345899	2350827	2346891	2350345	-	Cre12.g507557.t1.1	Cre12.g507557.t1.1		2350331,2349584,2349310,2348598,2345899	2350827,2350127,2349394,2349145,2346963	
chr12	2345899	2350527	2346891	2350345	-	Cre12.g507557.t2.1	Cre12.g507557.t2.1		2350331,2349584,2349310,2348598,2345899	2350527,2350127,2349394,2349145,2346963	
chr12	2350938	2354737	2351348	2354608	-	Cre12.g507558.t1.1	Cre12.g507558.t1.1		2354446,2354134,2353680,2352584,2352309,2351789,2350938	2354737,2354211,2353933,2352718,2352370,2351910,2351528	
chr12	2354868	2360179	2354924	2357420	+	HSC20B	Cre12.g507559.t1.1		2354868,2355740,2356263,2357204	2355403,2355821,2356442,2360179	Similar to Arabidopsis At5g06410, the putative homologue of yeast Jac1p and E. coli HscB, co-chaperone involved in iron-sulfur cluster assembly. Likely localized to mitochondria.
chr12	2321478	2328539	2321677	2328276	+	Cre12.g507600.t1.2	Cre12.g507600.t1.2		2321478,2322263,2322666,2323187,2323642,2324052,2324773,2325374,2325996,2326379,2327604	2321974,2322370,2322821,2323282,2323760,2324490,2325067,2325820,2326193,2326950,2328539	
chr12	2316223	2321002	2317064	2320792	-	CDJ1	Cre12.g507650.t1.2		2320561,2320383,2319696,2319175,2318239,2317736,2316223	2321002,2320442,2319925,2319256,2318457,2317933,2317301	Class I J-domain protein, probably involved in protein refolding. Characterized by Willmund et al. 2008 [PMID: 18931144] as a plastidic protein that is part of a multichaperone complex containing HSP70B, CGE1 and HSP90C.
chr12	2316223	2320883	2317064	2320792	-	CDJ1	Cre12.g507650.t2.1		2320561,2320383,2319696,2319175,2318239,2317736,2316223	2320883,2320442,2319925,2319256,2318457,2317933,2317301	Class I J-domain protein, probably involved in protein refolding. Characterized by Willmund et al. 2008 [PMID: 18931144] as a plastidic protein that is part of a multichaperone complex containing HSP70B, CGE1 and HSP90C.
chr12	2300477	2315602	2301103	2315516	-	Cre12.g507700.t1.1	Cre12.g507700.t1.1		2315474,2315265,2314952,2314183,2313857,2313412,2313029,2312365,2311831,2311248,2310560,2310165,2309563,2309287,2308847,2308371,2307901,2307544,2307107,2306588,2306154,2305453,2304957,2304519,2304181,2303687,2302370,2302050,2301640,2300477	2315602,2315356,2315039,2314313,2313944,2313513,2313118,2312718,2312169,2311478,2310925,2310286,2309733,2309379,2308958,2308556,2308080,2307632,2307243,2306840,2306313,2305821,2305076,2304635,2304249,2303770,2303160,2302107,2301861,2301460	
chr12	2292869	2299805	2294186	2299519	-	Cre12.g507750.t1.1	Cre12.g507750.t1.1		2299459,2299268,2299117,2298858,2298584,2298230,2298055,2297779,2297268,2296911,2296650,2296286,2296122,2295731,2295298,2294994,2294543,2292869	2299805,2299348,2299160,2298960,2298643,2298359,2298096,2297882,2297379,2297016,2296671,2296306,2296226,2295805,2295508,2295072,2294675,2294399	
chr12	2292869	2299805	2294186	2299519	-	Cre12.g507750.t2.1	Cre12.g507750.t2.1		2299459,2299268,2299117,2298858,2298584,2298230,2298055,2297779,2297268,2296928,2296286,2296122,2295731,2295298,2294994,2294543,2292869	2299805,2299348,2299160,2298960,2298643,2298359,2298096,2297882,2297379,2297016,2296306,2296226,2295805,2295508,2295072,2294675,2294399	
chr12	2292869	2299805	2294186	2299519	-	Cre12.g507750.t3.1	Cre12.g507750.t3.1		2299459,2299268,2299117,2298858,2298584,2298230,2298055,2297779,2297289,2296928,2296286,2296122,2295731,2295298,2294994,2294543,2292869	2299805,2299348,2299160,2298960,2298643,2298359,2298096,2297882,2297379,2297016,2296306,2296226,2295805,2295508,2295072,2294675,2294399	
chr12	2289633	2292864	2289752	2291756	+	Cre12.g507800.t1.2	Cre12.g507800.t1.2		2289633,2290162,2290427,2290706,2290952,2291133,2291445	2289829,2290236,2290499,2290747,2291012,2291252,2292864	
chr12	2283543	2289550	2283781	2286822	+	Cre12.g507850.t1.1	Cre12.g507850.t1.1		2283543,2283885	2283799,2289550	
chr12	2272733	2281714	2273247	2279964	+	Cre12.g507872.t1.1	Cre12.g507872.t1.1		2272733,2273709,2274274,2279495	2273383,2274022,2279336,2281714	
chr12	2265823	2272014	2266043	2269016	+	Cre12.g507900.t1.1	Cre12.g507900.t1.1		2265823,2265997,2266482	2265879,2266092,2272014	
chr12	2257933	2265754	2258063	2265146	+	Cre12.g507909.t1.2	Cre12.g507909.t1.2		2257933,2258282,2261901,2262953,2264660	2258142,2261797,2262799,2264521,2265754	
chr12	2253775	2257822	2254764	2257726	-	CGL98	Cre12.g507950.t1.1		2257428,2256862,2256622,2256248,2255964,2255605,2255068,2253775	2257822,2257037,2256633,2256415,2256081,2255801,2255416,2254922	Conserved in the Green Lineage
chr12	2248583	2252675	2248930	2252199	+	CIM40	Cre12.g508000.t1.1		2248583,2248821,2249075,2249306,2249604,2250322,2251014,2251615,2252145	2248713,2248957,2249242,2249409,2249934,2250457,2251195,2251851,2252675	similarity to AtTIC40 limited to C-terminal domain
chr12	2239067	2248462	2239582	2248176	-	Cre12.g508050.t1.2	Cre12.g508050.t1.2		2248130,2247540,2247347,2246971,2246721,2246554,2246158,2245844,2245393,2245160,2244877,2244615,2244378,2244141,2243904,2243656,2243408,2243125,2242916,2242700,2242377,2242134,2241807,2241445,2240542,2240319,2240009,2239695,2239067	2248462,2247701,2247446,2247214,2246883,2246573,2246448,2246050,2245704,2245261,2245042,2244765,2244497,2244259,2244046,2243805,2243533,2243312,2243009,2242806,2242578,2242213,2242005,2241673,2241344,2240414,2240195,2239868,2239593	
chr12	2235407	2238993	2235796	2238855	-	Cre12.g508100.t1.1	Cre12.g508100.t1.1		2238755,2238286,2237939,2237661,2236880,2236175,2235407	2238993,2238477,2238101,2237791,2237385,2236291,2235979	
chr12	2225704	2235388	2225802	2234638	+	Cre12.g508150.t1.2	Cre12.g508150.t1.2		2225704,2226018,2226206,2226418,2226768,2228048,2228459,2228836,2229357,2229779,2230313,2230881,2231486,2231982,2232266,2232662,2233088,2233511,2233790,2234197	2225865,2226110,2226343,2226512,2226984,2228227,2228623,2229033,2229466,2229927,2230454,2231051,2231681,2232066,2232436,2232822,2233308,2233622,2233942,2235388	SNF2-related helicase, ISW1/2 class, ChromDB CHR344
chr12	2221287	2225598	2221796	2225450	-	Cre12.g508200.t1.2	Cre12.g508200.t1.2		2225372,2224886,2224586,2224324,2223579,2223240,2222777,2222275,2221287	2225598,2224933,2224667,2224370,2223737,2223387,2222939,2222551,2222078	
chr12	2218093	2218892	2218433	2218815	-	Cre12.g508233.t1.2	Cre12.g508233.t1.2		2218647,2218093	2218892,2218508	
chr12	2200003	2215352	2200305	2214679	+	Cre12.g508250.t1.1	Cre12.g508250.t1.1		2200003,2200973,2201434,2201721,2202106,2202703,2203166,2203419,2203733,2204044,2204217,2204491,2204885,2205123,2205432,2205658,2206039,2206831,2207230,2207489,2207789,2208198,2208413,2208779,2209064,2209443,2210585,2211384,2212037,2212551,2212906,2213267,2213693,2214133,2214541	2200836,2201200,2201556,2201875,2202310,2202831,2203230,2203497,2203880,2204096,2204297,2204715,2204959,2205284,2205505,2205914,2206638,2207012,2207328,2207641,2208055,2208229,2208500,2208958,2209288,2210384,2211247,2211807,2212288,2212743,2212987,2213546,2213919,2214258,2215352	
chr12	2197288	2199324	2197923	2198860	+	CGL144	Cre12.g508300.t1.1		2197288,2197919,2198486,2198803	2197510,2198175,2198641,2199324	
chr12	2199613	2199924	2199640	2199806	+	Cre12.g508302.t1.1	Cre12.g508302.t1.1		2199613	2199924	
chr12	2194717	2197182	2195001	2197122	-	TPR2	Cre12.g508350.t1.2		2196973,2196523,2196279,2195938,2195633,2195402,2194717	2197182,2196765,2196379,2196011,2195704,2195455,2195172	TPR protein, strong similarity to rice protein BAB93301 and cyanobacterial proteins. Mitochondrial targeting predicted by multiple programs. Arabidopsis homolog is plastid predicted
chr12	2188287	2193042	2188441	2192973	-	Cre12.g508450.t1.1	Cre12.g508450.t1.1		2192938,2192740,2192564,2192290,2191906,2191530,2191186,2190763,2190403,2190035,2189161,2188287	2193042,2192813,2192604,2192364,2191995,2191670,2191338,2190930,2190531,2190271,2189742,2188936	
chr12	2183383	2188280	2183654	2188019	+	Cre12.g508500.t1.2	Cre12.g508500.t1.2		2183383,2184017,2184308,2184802,2185049,2185264,2185700,2186268,2186522,2186921,2187309,2187641	2183778,2184120,2184379,2184916,2185091,2185399,2185858,2186354,2186667,2187047,2187431,2188280	
chr12	2177932	2183222	2178883	2183008	-	PAN2	Cre12.g508550.t1.1		2182971,2181716,2181360,2180965,2180407,2180005,2179742,2179355,2177932	2183222,2182596,2181506,2181070,2180508,2180195,2179795,2179492,2179045	3-methyl-2-oxobutanoate hydroxymethyltransferase, KPHMT, the first enzyme in the pantothenate biosynthesis pathway
chr12	2164510	2165732	2164749	2165193	-	Cre12.g508642.t1.2	Cre12.g508642.t1.2		2165548,2165113,2164510	2165732,2165264,2164846	
chr12	2164510	2166102	2164808	2165978	-	Cre12.g508643.t1.1	Cre12.g508643.t1.1		2165856,2165113,2164510	2166102,2165264,2164846	
chr12	2166157	2177592	2166665	2176825	-	HDG1	Cre12.g508644.t1.1		2177008,2174749,2173837,2170153,2168993,2168652,2168232,2167873,2166157	2177592,2176847,2174606,2173632,2170046,2168750,2168330,2167983,2167259	gamete-specific.  Described by  Lee et al. 28 [PMID: 1851927]
chr12	2154050	2163665	2156656	2163022	-	Cre12.g508650.t1.1	Cre12.g508650.t1.1		2163249,2162499,2161512,2160884,2160334,2158897,2158534,2158334,2154050	2163665,2163065,2162257,2161306,2160676,2160213,2158655,2158391,2158251	
chr12	2149686	2154017	2150035	2153441	+	ELG2	Cre12.g508700.t1.2		2149686,2150291,2150621,2150849,2151102,2151460,2151922,2152202,2152646,2153174	2150099,2150333,2150690,2150917,2151159,2151536,2151992,2152287,2152854,2154017	belongs to the family of exostosin-like glycosyltransferases
chr12	2146536	2149354	2146555	2148392	+	LHCA2	Cre12.g508750.t1.2		2146536,2146880,2147073,2147594,2147946,2148243	2146704,2146977,2147128,2147779,2148048,2149354	
chr12	2134376	2137334	2134441	2136723	+	Cre12.g508850.t1.1	Cre12.g508850.t1.1		2134376,2134667,2135085,2135367,2135619,2136022,2136263,2136612	2134582,2134804,2135165,2135428,2135700,2136115,2136342,2137334	
chr12	2137506	2140595	2137792	2140535	+	Cre12.g508852.t1.1	Cre12.g508852.t1.1		2137506,2138196,2138578,2139031,2140117	2138061,2138278,2138733,2139610,2140595	
chr12	2140656	2146237	2140720	2145688	+	BPL2	Cre12.g508853.t1.1		2140656,2142514,2142856,2143078,2143729,2144182,2144447,2144907,2145333,2145596	2142229,2142634,2142938,2143509,2143929,2144217,2144605,2145007,2145418,2146237	Biotin apo-protein ligase; biotin-[methylcrotonoyl-CoA-carboxylase] ligase
chr12	2129460	2133325	2130709	2133014	-	MAPK6	Cre12.g508900.t1.2		2132860,2132598,2132369,2132080,2131840,2131295,2130985,2129460	2133325,2132761,2132506,2132204,2131944,2131472,2131150,2130807	Downstream kinase in the canonical MAP kinase pathway
chr12	2119590	2122035	2119607	2122006	-	MAPK3	Cre12.g509000.t1.1		2121828,2121468,2121162,2120936,2120669,2120438,2120018,2119691,2119590	2122035,2121631,2121230,2121004,2120793,2120539,2120195,2119856,2119618	Mitogen-Activated Protein Kinase Homolog 3; downstream kinase in the canonical MAP kinase pathway
chr12	2122513	2125455	2123133	2125246	-	RPK2	Cre12.g509001.t1.1		2125040,2124243,2123890,2123657,2122513	2125455,2124429,2124063,2123750,2123417	has putative dual MAPKK activity
chr12	2117140	2119587	2117172	2118962	+	PSBP3	Cre12.g509050.t1.1		2117140,2117297,2117451,2117768,2118208,2118469,2118861	2117208,2117372,2117531,2117961,2118279,2118565,2119587	similar to PSBP (oxygen-evolving enhancer protein 2, 23 kDa subunit of oxygen evolving complex of photosystem II, OEC 23 kDa subunit, 23 kDa thylakoid membrane protein, OEC23); precursor of chloroplast-localized protein, directed to thylakoid lumen by a TAT signal
chr12	2113446	2116477	2113674	2115069	+	FAP307	Cre12.g509100.t1.2		2113446,2113929,2114083,2114251,2114406,2114698,2115012	2113742,2114001,2114157,2114292,2114528,2114739,2116477	
chr12	2109070	2113304	2109196	2113201	-	Cre12.g509150.t1.1	Cre12.g509150.t1.1		2113070,2112127,2111820,2111603,2111404,2111206,2110912,2110692,2109613,2109070	2113304,2112913,2111960,2111692,2111514,2111298,2111068,2110804,2110569,2109412	
chr12	2104406	2109067	2104677	2108458	+	Cre12.g509200.t1.2	Cre12.g509200.t1.2		2104406,2105071,2105335,2105722,2105994,2106203,2106429,2106719,2107036,2107365,2107625,2107834,2108086	2104680,2105149,2105526,2105787,2106044,2106307,2106597,2106876,2107195,2107434,2107699,2107938,2109067	
chr12	2101188	2104358	2101569	2103872	+	EYE2	Cre12.g509250.t1.1		2101188,2102143,2102540,2102777,2103149	2101924,2102285,2102635,2102986,2104358	Thioredoxin superfamily protein required for eyespot assembly; contains a LysM domain; the conserved thioredoxin active site cys residues are not required for eyespot assembly, suggestive of a chaperonin-type function; PMID: 11454753; Genbank entry AF233430
chr12	2098960	2101055	2099264	2100940	-	Cre12.g509300.t1.2	Cre12.g509300.t1.2		2100779,2100287,2100008,2099738,2098960	2101055,2100613,2100119,2099797,2099426	
chr12	2096296	2098957	2096517	2098392	+	FAP238	Cre12.g509350.t1.2		2096296,2097131,2097434,2097733,2098267	2097030,2097208,2097537,2098013,2098957	Flagellar Associated Protein, found in the flagellar proteome
chr12	2091189	2096175	2092335	2096039	-	RIR3	Cre12.g509400.t1.2		2095491,2095116,2094675,2094071,2093708,2092743,2091189	2096175,2095219,2094877,2094376,2093808,2092836,2092461	Ribonucleotide Reductase (RNR), small subunit.  Previously annotated as RIR2B
chr12	2087100	2090645	2087510	2090499	-	Cre12.g509450.t1.1	Cre12.g509450.t1.1		2090396,2090131,2089004,2088454,2087100	2090645,2090208,2090002,2088726,2088238	null-allele mutant was isolated (PMID 29743196)
chr12	2087100	2090645	2087510	2090499	-	Cre12.g509450.t2.1	Cre12.g509450.t2.1		2090396,2089004,2088454,2087100	2090645,2090002,2088726,2088238	null-allele mutant was isolated (PMID 29743196)
chr12	2077196	2087097	2077415	2086234	+	Cre12.g509500.t1.1	Cre12.g509500.t1.1		2077196,2077716,2078012,2078341,2078712,2079074,2079400,2079837,2080214,2080616,2081170,2081775,2082690,2082909,2083620,2086131	2077449,2077804,2078093,2078432,2078901,2079181,2079572,2079941,2080387,2080998,2081623,2082528,2082757,2083445,2085988,2087097	
chr12	2071055	2077032	2072280	2076753	-	PDE5	Cre12.g509550.t1.1		2076679,2076523,2076339,2075898,2075747,2075538,2075383,2075120,2074588,2073776,2073054,2072693,2071055	2077032,2076579,2076438,2075959,2075783,2075645,2075449,2075241,2074722,2074149,2073564,2072866,2072427	Metal dependent hydrolase similar to cAMP dependent cyclic phosphodiesterase from Canis XP_852383.1
chr12	2067818	2070407	2068494	2069376	+	CDD2	Cre12.g509600.t1.1		2067818,2068101,2068281,2068459,2068779,2069085,2069338	2067939,2068138,2068347,2068541,2068937,2069197,2070407	
chr12	2063636	2067715	2064283	2067623	-	PDS1	Cre12.g509650.t1.2		2067290,2066725,2065987,2065113,2064686,2063636	2067715,2067204,2066200,2065374,2064844,2064530	Phytoene desaturase (zeta-carotene-forming), chloroplast precursor [PMID:15579683]
chr12	2060640	2063508	2060924	2063301	-	Cre12.g509700.t1.1	Cre12.g509700.t1.1		2063247,2063094,2062842,2062409,2062018,2061659,2061236,2060640	2063508,2063155,2062936,2062623,2062204,2061847,2061510,2061044	
chr12	2057956	2060617	2058232	2059691	+	MPPA2	Cre12.g509750.t1.2		2057956,2058221	2058024,2060617	mitochondrial processing peptidase, alpha subunit [PMID: 15710684]; also Core II subunit of mitochondrial Complex III (ubiquinol:cytochrome c oxidoreductase) (QCR2); identified in proteomic survey of mitochondrial membranes (PMID: 12191769)
chr12	2056092	2057856	2056614	2057472	-	FAP286	Cre12.g509800.t1.2		2057316,2056825,2056092	2057856,2057037,2056683	Flagellar Associated Coiled-Coil Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr12	2044806	2056067	2045046	2055158	+	MLT1	Cre12.g509850.t1.1		2044806,2048339,2048746,2049197,2053788	2048245,2048520,2049027,2053655,2056067	Low complexity protein required for eyespot localization; mlt1 mutant cells have multiple eyespots; protein localizes along the D4 rootlet microtubules
chr12	2040441	2044705	2041139	2044606	-	Cre12.g509900.t1.1	Cre12.g509900.t1.1		2044495,2044312,2043918,2043414,2043098,2042812,2042475,2041718,2040441	2044705,2044428,2044044,2043490,2043244,2042898,2042663,2042338,2041496	
chr12	2035116	2040407	2035235	2040139	+	Cre12.g509950.t1.1	Cre12.g509950.t1.1		2035116,2035633,2035991,2036381,2036757,2037024,2037283,2037488,2037631,2037983,2038171,2038534,2038825,2039193,2039532	2035407,2035736,2036142,2036530,2036846,2037095,2037400,2037523,2037813,2038027,2038398,2038668,2039007,2039305,2040407	
chr12	2030240	2034930	2030372	2034321	+	Cre12.g510000.t1.2	Cre12.g510000.t1.2		2030240,2030835,2031367,2031722,2032146,2032538,2033065,2033616,2034174	2030525,2031019,2031482,2031816,2032214,2032672,2033367,2033813,2034930	null-allele passenger mutation was isolated (PMID 29743196)
chr12	2028125	2030085	2028222	2029940	-	Cre12.g510034.t1.1	Cre12.g510034.t1.1		2029918,2029716,2029259,2028992,2028751,2028125	2030085,2029762,2029372,2029114,2028801,2028579	
chr12	2024726	2027967	2025057	2026978	+	CTH1	Cre12.g510050.t1.2		2024726,2025505,2026059,2026534,2026813	2025387,2025937,2026235,2026643,2027967	Copper target homolog 1 protein, chloroplast precursor, functional variant produced under copper and/or oxygen sufficient conditions [GI:1565866; PMID: 119113; PMID: 1467313]; Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase, aerobic oxidative cyclase; orthologous to Rubrivax gelatinosus aerobic oxidative cyclase [PMID: 11790744; PMID: 14617630]
chr12	2018206	2022397	2018433	2021565	+	ATG4	Cre12.g510100.t1.1		2018206,2018566,2018726,2018858,2019131,2019591,2020690,2021380	2018478,2018661,2018798,2018928,2019276,2020479,2021107,2022397	Conserved cysteine protease required for autophagy; cleaves Atg8p to a form required for autophagosome generation
chr12	2013680	2018064	2014406	2017918	-	Cre12.g510150.t1.2	Cre12.g510150.t1.2		2017482,2017206,2016920,2016567,2016325,2015912,2015655,2015230,2014818,2013680	2018064,2017324,2016976,2016728,2016429,2016013,2015738,2015403,2014961,2014499	
chr12	2010086	2013670	2010185	2011665	+	Cre12.g510200.t1.2	Cre12.g510200.t1.2		2010086,2010836,2011003,2011179	2010616,2010908,2011074,2013670	Basic-leucine zipper (bZIP) transcription factor
chr12	2006992	2008812	2007833	2008713	-	VTC1	Cre12.g510250.t1.2		2008568,2008272,2006992	2008812,2008498,2007938	Expressed Protein. Similar to Vacuolar Transport Chaperone.
chr12	2008960	2009985	2009389	2009953	-	Cre12.g510252.t1.1	Cre12.g510252.t1.1		2009776,2008960	2009985,2009515	
chr12	1992621	2005012	1993748	2004279	+	UBC21	Cre12.g510300.t1.1		1992621,1993051,1993367,1993701,1994218,1994417,1994888,1995301,1995775,1996161,1996527,1996933,1997513,1997772,1998305,1998853,1999391,1999702,2000088,2000423,2000980,2001367,2001769,2002125,2002543,2002888,2003257,2003490,2003817,2004243	1992847,1993264,1993599,1994006,1994279,1994507,1995079,1995561,1995900,1996334,1996656,1997258,1997607,1998024,1998478,1998957,1999486,1999810,2000299,2000609,2001092,2001498,2002009,2002339,2002728,2003028,2003337,2003615,2003987,2005012	
chr12	1958105	1991500	1958935	1991261	-	Cre12.g510350.t1.1	Cre12.g510350.t1.1		1991248,1990239,1989976,1989549,1989259,1988646,1988141,1987973,1987716,1987391,1986969,1986741,1986445,1985991,1985506,1984599,1984351,1984093,1983659,1983379,1983073,1982651,1982463,1982167,1981876,1981531,1981257,1980757,1980452,1980212,1979907,1979559,1978982,1978700,1978566,1978138,1977411,1977140,1976845,1976342,1975623,1975272,1975046,1974631,1973961,1973458,1973165,1972957,1972728,1972580,1972382,1972153,1971662,1971395,1970943,1970612,1970397,1970032,1969712,1969303,1969043,1968836,1967885,1967544,1966724,1966328,1966049,1965704,1965307,1965021,1964676,1964423,1964134,1963773,1963602,1963247,1960301,1959881,1958105	1991500,1990390,1990029,1989786,1989342,1989050,1988455,1988023,1987788,1987541,1987061,1986786,1986571,1986263,1985840,1984706,1984440,1984214,1983932,1983486,1983179,1982947,1982508,1982306,1981987,1981710,1981385,1980990,1980618,1980299,1980124,1979760,1979397,1978814,1978597,1978353,1977839,1977295,1977010,1976711,1976235,1975472,1975139,1974894,1974482,1973829,1973190,1973052,1972829,1972633,1972476,1972249,1972038,1971534,1971318,1970828,1970519,1970259,1969864,1969608,1969186,1968943,1968703,1967759,1967371,1966585,1966221,1965863,1965520,1965204,1964916,1964543,1964276,1963952,1963685,1963462,1963114,1960186,1959754	Putative basic-leucine zipper (bZIP) transcription factor, conserved in Volvox, with PAN-1 protein-protein interaction domain; null-allele mutant was isolated (PMID 29743196)
chr12	1955441	1957967	1955496	1957398	+	CPLD30	Cre12.g510400.t1.1		1955441,1955710,1956027,1956311,1956688,1957037,1957299	1955631,1955781,1956081,1956411,1956830,1957130,1957967	Putative rubredoxin-like protein.  Conserved expressed thylakoid localized protein with rubredoxin cluster; strong similarity to unknown protein [Oryza sativa (japonica cultivar-group). AP554.3 Gene designation P577B11.138. Contains rubredoxin-type ir
chr12	1953311	1955392	1953715	1954427	+	RPS28	Cre12.g510450.t1.2		1953311,1953689,1953934,1954374	1953575,1953751,1954012,1955392	Cytosolic 40S small ribosomal subunit protein S28
chr12	1947277	1953180	1948143	1951700	-	Cre12.g510500.t1.1	Cre12.g510500.t1.1		1952396,1952228,1951934,1951697,1951403,1950903,1950493,1949726,1947277	1953180,1952281,1952111,1951812,1951516,1951208,1950687,1950324,1949506	
chr12	1942505	1947230	1942861	1947135	-	Cre12.g510550.t1.2	Cre12.g510550.t1.2		1946652,1946231,1945200,1944801,1944377,1944180,1943875,1943204,1942505	1947230,1946479,1946114,1944957,1944642,1944248,1943955,1943546,1942992	
chr12	1939492	1942380	1940080	1941941	-	Cre12.g510600.t1.2	Cre12.g510600.t1.2		1942070,1941869,1941546,1941080,1940692,1939492	1942380,1941972,1941665,1941406,1940840,1940504	Serine/Threonine Protein Kinase Homolog 11
chr12	1935474	1938770	1936002	1938659	-	FBP2	Cre12.g510650.t1.2		1938554,1938419,1938269,1937905,1937481,1937205,1936585,1935474	1938770,1938487,1938355,1938045,1937555,1937262,1936901,1936398	Fructose-1,6-bisphosphatase (EC 3.1.3.11), plastid precursor
chr12	1922651	1926492	1922892	1926295	+	Cre12.g510750.t1.1	Cre12.g510750.t1.1		1922651,1923216,1923435,1923960,1924684,1924947,1925501,1926078	1923045,1923311,1923765,1924525,1924781,1924986,1925904,1926492	MED27 homology. ts lethal mutations isolated (PMID 25336509)
chr12	1926495	1933250	1929282	1933030	-	Cre12.g510751.t1.1	Cre12.g510751.t1.1		1931154,1929611,1926495	1933250,1930956,1929306	
chr12	1933355	1935350	1934270	1934981	-	Cre12.g510752.t1.1	Cre12.g510752.t1.1		1934845,1933355	1935350,1934320	
chr12	1918571	1922520	1918949	1922383	-	CHLI2	Cre12.g510800.t1.2		1922131,1921441,1921144,1920849,1920526,1920155,1919829,1919440,1918571	1922520,1921596,1921245,1920908,1920636,1920255,1919955,1919597,1919160	Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase); Orthologous to the bacterial magnesium chelatase subunits BchI, and other plant magnesium chelatase subunits ChlI [PMID: 9359397]; forms an ATP dependent hexameric ring complex and a complex with the ChlD subunit (probably a double hexameric ring complex) before acting on the protoporphyrin which is bound to the ChlH protein to insert magnesium [PMID: 11469861]; may have similar function to Arabidopsis CHLI2 gene [PMID: 11842180]; chloroplast targeting signal peptide predicted 1-37 by ChloroP.
chr12	1915811	1918562	1915856	1917744	+	CGL73	Cre12.g510850.t1.2		1915811,1916069,1916341,1916661,1917143,1917630	1915945,1916224,1916470,1916839,1917314,1918562	Conserved in the Green Lineage
chr12	1910721	1915762	1910913	1915127	+	HSLU1	Cre12.g510900.t1.2		1910721,1911545,1911864,1912281,1912614,1912893,1913268,1913593,1913863,1914301,1914650	1911287,1911669,1911934,1912415,1912698,1913059,1913387,1913691,1913973,1914399,1915762	Similar to eubacterial ClpY (HslU), ATP-dependent subunit of the HslUV protease; probably directed to the mitochondrion; null-allele mutant was isolated (PMID 29743196)
chr12	1904995	1910600	1905575	1910483	-	Cre12.g510950.t1.2	Cre12.g510950.t1.2		1910424,1910272,1909988,1909511,1909213,1908851,1908401,1908031,1907283,1904995	1910600,1910346,1910136,1909713,1909340,1909108,1908605,1908250,1907926,1907174	
chr12	1902991	1904962	1903762	1904830	+	Cre12.g511000.t1.1	Cre12.g511000.t1.1		1902991,1903474,1903739,1904162,1904526	1903371,1903620,1903986,1904335,1904962	
chr12	1899965	1902850	1900359	1902561	-	RSP16	Cre12.g511050.t1.2		1902517,1902356,1902054,1901810,1901410,1901038,1899965	1902850,1902385,1902157,1901881,1901573,1901204,1900819	A structural HSP40 (DnaJ) in the radial spoke stalk [PMID: 16507594, PMID: 15563613; GI:56404248]
chr12	1897171	1899962	1897274	1899789	+	Cre12.g511100.t1.1	Cre12.g511100.t1.1		1897171,1897677,1897925,1898502,1898962,1899204	1897400,1897766,1898234,1898689,1899054,1899962	
chr12	1893174	1897070	1893806	1896408	-	GPD1	Cre12.g511150.t1.2		1896192,1895828,1895520,1895136,1894806,1894368,1893174	1897070,1895941,1895579,1895348,1894930,1894533,1893971	Interconverts dihydroxyacetone phosphate and glycerol-3-phosphate. Possibly involved in G-3-P production for glycerolipid biosynthesis, by homology to an uncharacterized Arabidopsis protein
chr12	1891361	1892672	1891482	1891888	+	NUOS5	Cre12.g511200.t1.2		1891361,1891628,1891807	1891548,1891726,1892672	NADH:ubiquinone oxidoreductase subunit PFFD-like protein, (Complex I PFFD subunit), mitochondrial [= NDUFS5 subunit]; gb AAQ98888  [PMID: 15450959; PMID: 15710684]
chr12	1889395	1891260	1890117	1891199	-	Cre12.g511250.t1.2	Cre12.g511250.t1.2		1891133,1890864,1890581,1889395	1891260,1890986,1890715,1890354	
chr12	1884739	1889386	1885131	1887903	+	Cre12.g511300.t1.1	Cre12.g511300.t1.1		1884739,1885375,1885673,1886014,1886377,1886577,1886902,1887192	1885244,1885521,1885789,1886110,1886426,1886694,1887009,1889386	
chr12	1879999	1884610	1880571	1884490	-	Cre12.g511350.t1.1	Cre12.g511350.t1.1		1884444,1884225,1883939,1883480,1882866,1882365,1882105,1879999	1884610,1884274,1884073,1883730,1883267,1882764,1882220,1881967	
chr12	1870139	1877630	1870500	1875667	+	PPR4	Cre12.g511400.t1.1		1870139,1871069,1871365,1871711,1872071,1872339,1872747,1872994,1873484,1873758,1874281,1874563,1875109	1870961,1871285,1871535,1871817,1872173,1872498,1872812,1873312,1873630,1874124,1874401,1874897,1877630	PentratricoPeptide Repeat protein with a SmR-like and a cyclin domain; 9 PPR repeats
chr12	1865429	1867460	1865512	1866317	+	Cre12.g511550.t1.2	Cre12.g511550.t1.2		1865429	1867460	
chr12	1858603	1865328	1859270	1865181	-	Cre12.g511600.t1.1	Cre12.g511600.t1.1		1864998,1864767,1864487,1864211,1863668,1863151,1862716,1861829,1861605,1858603	1865328,1864925,1864638,1864297,1863889,1863491,1863019,1862562,1861709,1861468	
chr12	1856403	1858408	1856537	1858381	-	PIGX	Cre12.g511640.t1.1		1858251,1858083,1857908,1857753,1857479,1857181,1856403	1858408,1858170,1857998,1857831,1857521,1857365,1856971	
chr12	1851656	1856400	1851746	1855954	+	Cre12.g511650.t1.1	Cre12.g511650.t1.1		1851656,1851980,1852198,1852686,1853410,1853816,1854061,1855297,1855717	1851894,1852057,1852458,1853212,1853543,1853912,1855056,1855443,1856400	
chr12	1847169	1851007	1847323	1850325	+	Cre12.g511700.t1.2	Cre12.g511700.t1.2		1847169,1847474,1847580,1847817,1848831,1849072,1849372,1849715,1849975,1850229	1847396,1847511,1847636,1848350,1848956,1849122,1849464,1849795,1850058,1851007	
chr12	1845052	1847178	1845188	1846680	+	FAP105	Cre12.g511750.t1.2		1845052,1845497,1845890,1846187	1845232,1845664,1846048,1847178	
chr12	1842493	1844948	1843048	1844874	-	Cre12.g511800.t1.1	Cre12.g511800.t1.1		1844588,1844413,1843881,1843501,1843242,1842493	1844948,1844435,1844140,1843695,1843302,1843090	
chr12	1838103	1841948	1839328	1841819	-	GSK3	Cre12.g511850.t1.2		1841803,1841527,1841368,1841237,1841091,1840824,1840043,1839824,1839587,1838103	1841948,1841706,1841414,1841305,1841171,1840997,1840744,1839932,1839666,1839349	Glycogen Synthase Kinase 3 [PMID: 15470259]; Shaggy Kinase; Zeste White Kinase-3; Housekeeping kinase involved in cytoskeletal regulation; gene regulation; kinesin regulation in mammals
chr12	1825706	1828406	1825739	1827773	+	RPE1	Cre12.g511900.t1.2		1825706,1826032,1826261,1826698,1827114,1827377,1827723	1825916,1826172,1826374,1826886,1827170,1827446,1828406	ribulose phosphate-3-epimerase, chloroplast precursor; (EC 2.7.1.19)
chr12	1835639	1836565	1835821	1836215	+	Cre12.g511902.t1.1	Cre12.g511902.t1.1		1835639,1836100	1835886,1836565	
chr12	1818769	1824680	1818820	1824242	+	Cre12.g511950.t1.2	Cre12.g511950.t1.2		1818769,1819396,1819753,1820269,1820603,1820965,1821198,1821448,1821792,1822262,1822656,1822883,1823501,1823845	1819151,1819487,1819970,1820381,1820733,1820980,1821263,1821525,1821905,1822346,1822713,1823056,1823604,1824680	
chr12	1824703	1825598	1825176	1825354	-	Cre12.g511952.t1.1	Cre12.g511952.t1.1		1824703	1825598	
chr12	1812738	1818715	1813040	1818180	+	Cre12.g512000.t1.1	Cre12.g512000.t1.1		1812738,1813143,1813975,1814445,1814622,1814901,1815181,1815520,1815883,1816238,1816804,1817778	1813046,1813902,1814091,1814534,1814770,1815011,1815306,1815711,1816080,1816606,1817568,1818715	
chr12	1804309	1812135	1804735	1811052	+	Cre12.g512050.t1.1	Cre12.g512050.t1.1		1804309,1805171,1805538,1806506,1807094,1807615,1807856,1808027,1808636,1810794	1804940,1805221,1805579,1806904,1807254,1807707,1807898,1808465,1808798,1812135	
chr12	1798037	1804198	1798553	1803419	-	PIF1	Cre12.g512100.t1.1		1803236,1802833,1802020,1801722,1800849,1799959,1799001,1798037	1804198,1803092,1802686,1801901,1801540,1800673,1799840,1798859	similar to animal PIF1/RRM3 DNA helicase
chr12	1785905	1792708	1786963	1792276	-	MFT26	Cre12.g512200.t1.1		1792513,1792156,1791864,1791498,1790987,1790733,1790310,1788341,1787997,1787715,1787348,1785905	1792708,1792295,1791938,1791639,1791064,1790820,1790409,1790174,1788100,1787822,1787440,1787170	Major facilitator superfamily anti-transporter
chr12	1795583	1797888	1796037	1796687	-	Cre12.g512202.t1.1	Cre12.g512202.t1.1		1797097,1796630,1796274,1795583	1797888,1796769,1796525,1796094	
chr12	1777563	1785858	1778203	1785828	-	RRP7	Cre12.g512250.t1.1		1785813,1785748,1785582,1785161,1784703,1784316,1783961,1783542,1783259,1782894,1782567,1781046,1779288,1777563	1785858,1785771,1785662,1785389,1784897,1784455,1784034,1783674,1783342,1782962,1782710,1781205,1780672,1778893	Contains Helicase/RNase D C-terminal (HRDC) domain/  Polymyositis/scleroderma autoantigen-related; similar to exosome components; may cooperate with MUT68 in degradation of miRNAs and siRNAs [PMID: 2142471]
chr12	1768951	1777470	1769417	1777432	-	Cre12.g512300.t1.2	Cre12.g512300.t1.2		1777127,1776630,1776383,1776066,1775748,1775333,1774933,1774586,1774125,1773711,1773347,1772963,1772604,1772372,1771963,1771671,1771357,1770966,1770703,1770300,1769988,1768951	1777470,1776917,1776418,1776177,1775807,1775587,1775088,1774712,1774192,1773950,1773500,1773164,1772820,1772455,1772159,1771762,1771442,1771107,1770800,1770380,1770065,1769627	
chr12	1764553	1768088	1764850	1767743	-	Cre12.g512350.t1.2	Cre12.g512350.t1.2		1767622,1766667,1766391,1765278,1764553	1768088,1767448,1766533,1766214,1765087	
chr12	1757519	1764516	1757946	1763762	+	Cre12.g512400.t1.1	Cre12.g512400.t1.1		1757519,1758208,1758563,1759032,1759444,1759730,1760055,1760385,1760681,1760918,1761104,1761507,1761905,1762296,1762559,1763296,1763621	1758078,1758338,1758776,1759220,1759479,1759897,1760185,1760492,1760735,1760953,1761251,1761761,1762047,1762410,1762998,1763376,1764516	
chr12	1751559	1757462	1751822	1756289	+	Cre12.g512450.t1.1	Cre12.g512450.t1.1		1751559,1751932,1752074,1752165,1752389,1752526,1752687,1752923,1753463,1753876,1754013	1751859,1751981,1752080,1752279,1752457,1752588,1752832,1753309,1753749,1753921,1757462	
chr12	1751559	1757462	1751822	1756289	+	Cre12.g512450.t2.1	Cre12.g512450.t2.1		1751559,1751932,1752074,1752185,1752389,1752526,1752687,1752923,1753463,1753876,1754013	1751859,1751981,1752097,1752279,1752457,1752588,1752832,1753309,1753749,1753921,1757462	
chr12	1747803	1751328	1748122	1750928	-	Cre12.g512500.t1.1	Cre12.g512500.t1.1		1750833,1750564,1750363,1750038,1749654,1749358,1748880,1747803	1751328,1750696,1750440,1750160,1749797,1749483,1749185,1748722	
chr12	1745849	1747770	1745956	1747112	+	Cre12.g512550.t1.2	Cre12.g512550.t1.2		1745849,1746373,1746609,1747010	1746071,1746434,1746701,1747770	
chr12	1742373	1745738	1742969	1745704	-	RPL18	Cre12.g512600.t1.2		1745701,1745539,1745336,1745082,1743826,1742373	1745738,1745628,1745464,1745201,1743949,1743067	Cytosolic 60S large ribosomal subunit protein L18
chr12	1730049	1742332	1730098	1741044	+	Cre12.g512650.t1.1	Cre12.g512650.t1.1		1730049,1730417,1730743,1731090,1731513,1731989,1732453,1733003,1733964,1734294,1734584,1734968,1736083,1736529,1737054,1737391,1737709,1738561,1738932,1739390,1739937,1740388,1740847	1730219,1730478,1730888,1731296,1731601,1732218,1732843,1733701,1734086,1734382,1734743,1735665,1736268,1736710,1737138,1737552,1738318,1738718,1739164,1739555,1740117,1740582,1742332	
chr12	1726939	1729976	1727172	1729411	+	Cre12.g512700.t1.2	Cre12.g512700.t1.2		1726939,1727909,1728295,1728663,1728959,1729270	1727706,1727959,1728444,1728741,1729077,1729976	null-allele mutant was isolated (PMID 29743196)
chr12	1715415	1726188	1716775	1726027	-	TEF20	Cre12.g512750.t1.1		1725928,1725726,1725445,1724519,1724085,1723814,1723436,1723054,1722635,1722038,1721523,1719822,1715415	1726188,1725833,1725507,1725202,1724234,1723894,1723612,1723212,1722727,1722373,1721699,1721324,1719385	Notchless-like WD40 repeat-containing protein, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr12	1715415	1726188	1716775	1726027	-	TEF20	Cre12.g512750.t2.1		1725928,1725726,1725445,1724519,1724085,1723814,1723436,1723054,1722635,1722038,1721523,1719822,1715415	1726188,1725830,1725507,1725202,1724234,1723894,1723612,1723212,1722727,1722373,1721699,1721324,1719385	Notchless-like WD40 repeat-containing protein, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr12	1709233	1712848	1709954	1712745	-	Cre12.g512788.t1.2	Cre12.g512788.t1.2		1712635,1712115,1710762,1710220,1709233	1712848,1712310,1710791,1710295,1709968	
chr12	1714073	1715288	1714794	1715119	-	Cre12.g512790.t1.1	Cre12.g512790.t1.1		1714073	1715288	
chr12	1705219	1706730	1705614	1706083	+	Cre12.g512850.t1.2	Cre12.g512850.t1.2		1705219,1706066	1705804,1706730	
chr12	3504173	3509015	3504286	3507534	+	CIT1	Cre12.g512950.t1.2		3504173,3504249,3504757,3505162,3505673,3505957,3506320,3506789,3507444	3504181,3504298,3504853,3505355,3505807,3506145,3506493,3507043,3509015	
chr12	3509503	3511694	3509760	3511662	+	GTR17	Cre12.g513000.t1.1		3509503,3510165,3510373,3510846,3511102,3511374,3511635	3509994,3510227,3510600,3510959,3511209,3511553,3511694	glycosyl transferase, family 31
chr12	3513183	3516504	3513222	3516292	+	Cre12.g513100.t1.2	Cre12.g513100.t1.2		3513183,3513678,3514003,3514285,3514651,3514901,3515188	3513498,3513770,3514092,3514401,3514734,3515023,3516504	
chr12	3516507	3520622	3517320	3520513	-	MIA40	Cre12.g513150.t1.2		3520297,3520158,3519950,3519754,3519440,3519255,3519007,3518770,3518421,3518167,3517669,3516507	3520622,3520191,3520032,3519816,3519488,3519319,3519081,3518853,3518648,3518272,3518000,3517440	Intermembrane space factor involved in mitochondrial protein import. Similar to Arabidopsis Mia40 (AT5G55660.1) and to yeast Mia40 (YKL195W).
chr12	3521433	3525524	3521773	3525148	+	PGH1	Cre12.g513200.t1.2		3521433,3521925,3522135,3522391,3522617,3522874,3523109,3523426,3523747,3524118,3524366,3524803,3525073	3521787,3522015,3522328,3522457,3522736,3522942,3523200,3523505,3523862,3524224,3524662,3524914,3525524	Phosphoenolpyruvate hydratase; 2-phosphoglycerate dehydratase; EC 4.2.1.11 [GI:18143, Dumont et al. (1993) Plant Sci. 89, 55-67]; product localization unsure: an N-terminal extension also found in Dunaliella and At1g74030 potentially targets it to an organelle, especially if cDNA is extended >6 nt upstream; found in the flagellar proteome [PMID: 15998802]
chr12	3525963	3530924	3526503	3530550	+	Cre12.g513254.t1.2	Cre12.g513254.t1.2		3525963,3526171,3526364,3526771,3527110,3528024,3528450,3528726,3529064,3529240,3529448,3529769	3526098,3526261,3526640,3526849,3527807,3528156,3528560,3528863,3529124,3529332,3529583,3530924	
chr12	3530983	3533224	3531121	3533030	+	CGL23	Cre12.g513300.t1.2		3530983,3531239,3531573,3532093,3532344	3531164,3531343,3531937,3532210,3533224	
chr12	3533227	3541832	3533858	3541471	-	Cre12.g513350.t1.1	Cre12.g513350.t1.1		3541390,3541131,3540367,3539064,3538877,3535693,3535388,3534991,3534551,3534231,3533227	3541832,3541265,3540627,3540243,3538942,3538685,3535555,3535236,3534735,3534387,3534014	
chr12	3542907	3560382	3544404	3560347	-	EBG1	Cre12.g513400.t1.1		3560215,3559557,3559292,3559090,3558704,3558404,3558027,3557705,3557397,3555854,3555454,3554962,3554636,3554215,3553682,3553056,3552652,3552117,3551713,3551248,3550927,3550537,3549989,3549368,3548964,3548431,3548125,3547768,3547392,3547033,3542907	3560382,3559925,3559398,3559211,3558957,3558553,3558184,3557882,3557561,3557229,3555709,3555243,3554837,3554513,3554070,3553527,3552917,3552503,3551968,3551529,3551128,3550835,3550377,3549839,3549229,3548817,3548236,3547938,3547586,3547258,3546869	
chr12	3560457	3564892	3561456	3564726	-	TUH1	Cre12.g513450.t1.2		3564705,3564272,3564019,3563667,3563296,3562941,3562582,3562103,3561666,3560457	3564892,3564454,3564087,3563894,3563538,3563111,3562750,3562490,3561948,3561456	similar to zeta-tubulin from Paramecium [gi:9501681]
chr12	3564985	3571638	3565359	3571152	+	XAB2	Cre12.g513500.t1.2		3564985,3566102,3566590,3566941,3567321,3568051,3568411,3568920,3569221,3569640,3570027,3570477,3570967	3565569,3566353,3566703,3567132,3567598,3568204,3568721,3569091,3569373,3569810,3570283,3570805,3571638	Involved in transcription-coupled DNA repair. Contains TPR and HAT repeats [PMID: 10944529]
chr12	3571978	3574414	3572065	3574230	+	Cre12.g513550.t1.2	Cre12.g513550.t1.2		3571978,3572173,3572859,3573206,3573888,3574123	3572104,3572658,3573017,3573754,3574008,3574414	
chr12	3574463	3577145	3574485	3576620	+	Cre12.g513600.t1.2	Cre12.g513600.t1.2		3574463,3574630,3574912,3575141,3575609,3575904,3576150,3576401	3574566,3574778,3575033,3575412,3575746,3575984,3576278,3577145	
chr12	3577147	3579272	3578126	3579009	-	FAP342	Cre12.g513650.t1.2		3578994,3578793,3578358,3577147	3579272,3578908,3578552,3578238	
chr12	3579327	3581372	3579691	3581179	-	HEL52	Cre12.g513700.t1.1		3580997,3580563,3580119,3579327	3581372,3580725,3580301,3579886	
chr12	3581427	3588152	3581449	3588012	-	Cre12.g513701.t1.2	Cre12.g513701.t1.2		3587867,3587424,3587131,3586444,3586084,3585393,3585049,3584675,3584451,3584066,3583762,3583347,3582692,3582030,3581427	3588152,3587598,3587203,3586573,3586193,3585568,3585214,3584871,3584507,3584290,3583891,3583568,3583172,3582433,3581788	
chr12	3588205	3589812	3588691	3589733	-	GRX1	Cre12.g513750.t1.1		3589685,3589441,3589141,3588205	3589812,3589454,3589222,3588868	Glutaredoxin 1, CPYC type, probably cytosolic. PMID: 16328797
chr12	3589867	3593212	3591847	3593085	-	Cre12.g513800.t1.2	Cre12.g513800.t1.2		3592983,3592787,3592506,3592287,3589867	3593212,3592859,3592660,3592371,3592104	
chr12	3593333	3600254	3593437	3599631	+	Cre12.g513852.t1.1	Cre12.g513852.t1.1		3593333,3593537,3593785,3594107,3594357,3594722,3596349,3596569,3596870,3597924	3593472,3593633,3593889,3594226,3594550,3596195,3596395,3596692,3597694,3600254	
chr12	3600303	3612557	3600448	3611653	+	Cre12.g513900.t1.1	Cre12.g513900.t1.1		3600303,3600505,3600736,3601288,3601568,3601789,3602139,3602628,3603001,3603886,3604839,3605227,3605593,3606006,3607408,3607815,3608022,3608422,3608883,3609403,3609770,3610187,3610565,3611031,3611480	3600451,3600516,3600951,3601398,3601648,3601916,3602386,3602680,3603669,3604505,3605053,3605327,3605757,3607026,3607500,3607933,3608117,3608574,3609137,3609504,3609928,3610263,3610682,3611070,3612557	
chr12	3612613	3617104	3612659	3616210	+	SUFD1	Cre12.g513950.t1.2		3612613,3612784,3613009,3613514,3614063,3614531,3614924,3615331,3615689,3616050	3612708,3612925,3613126,3613702,3614195,3614715,3615049,3615504,3615861,3617104	putative ABC transporter involved in Fe-S cluster assembly, permease protein, homologous Arabidopsis protein Nap6 localized to plastid
chr12	3617107	3619718	3617780	3619561	-	LAG1	Cre12.g514000.t1.2		3619010,3618630,3618256,3617107	3619718,3618854,3618396,3618009	related to longevity assurance protein; TRAM, LAG1 and CLN8 domain homology; possibly involved in ceramide synthesis
chr12	3619877	3628602	3620924	3628299	-	GSF1	Cre12.g514050.t1.2		3628176,3627834,3627715,3627493,3626822,3625997,3625296,3624889,3624497,3623603,3623260,3619877	3628602,3628025,3627768,3627635,3627309,3626247,3625530,3625086,3624648,3624339,3623396,3623104	Glutamate synthase, ferredoxin-dependent . Also known as CRFG3 (genbank id # AF135592) Could be chloroplast targeted
chr12	3629755	3634721	3630810	3634599	-	Cre12.g514100.t1.1	Cre12.g514100.t1.1		3634424,3634243,3633987,3633644,3632823,3632387,3632180,3631763,3631378,3629755	3634721,3634293,3634043,3633852,3633033,3632592,3632205,3632017,3631610,3631187	
chr12	3638157	3644852	3639427	3644475	-	Cre12.g514200.t1.2	Cre12.g514200.t1.2		3644396,3644149,3643898,3643362,3643037,3642792,3642445,3642075,3641693,3640790,3640416,3640099,3638157	3644852,3644297,3644020,3643521,3643182,3642890,3642553,3642258,3641847,3640963,3640561,3640248,3639589	
chr12	3645582	3662342	3646535	3661928	-	HLM17	Cre12.g514250.t1.2		3661505,3659830,3659159,3658799,3658318,3657884,3657592,3656244,3655739,3655267,3654908,3654501,3653771,3653371,3652978,3652418,3651637,3650594,3650237,3649754,3649303,3645582	3662342,3661212,3659668,3658984,3658590,3658135,3657727,3657483,3656048,3655461,3655069,3654636,3654292,3653543,3653127,3652771,3652260,3651414,3650366,3650058,3649549,3649106	null-allele mutant was isolated (PMID 29743196)
chr12	3662557	3664832	3662992	3664777	-	Cre12.g514300.t1.2	Cre12.g514300.t1.2		3664496,3663962,3663469,3662557	3664832,3664186,3663609,3663206	
chr12	3664887	3668352	3665284	3667273	-	Cre12.g514350.t1.2	Cre12.g514350.t1.2		3668163,3667509,3667082,3666803,3666450,3666097,3665768,3664887	3668352,3667785,3667332,3666884,3666535,3666201,3665875,3665447	
chr12	3668416	3682362	3670368	3681702	-	Cre12.g514400.t1.2	Cre12.g514400.t1.2		3681585,3681444,3681301,3681069,3680638,3680055,3674435,3674060,3672763,3668416	3682362,3681515,3681340,3681140,3680805,3680443,3679850,3674218,3673940,3672618	
chr12	3668416	3682362	3670368	3681702	-	Cre12.g514400.t2.1	Cre12.g514400.t2.1		3681585,3681444,3681301,3681069,3680638,3680055,3674435,3672763,3668416	3682362,3681515,3681340,3681140,3680805,3680443,3679850,3673940,3672618	
chr12	3683536	3691004	3684096	3690826	-	Cre12.g514450.t1.2	Cre12.g514450.t1.2		3690686,3690464,3690008,3689319,3688807,3688329,3687897,3687287,3686605,3686297,3685789,3685415,3685125,3684771,3683536	3691004,3690515,3690190,3689438,3688882,3688480,3688127,3687398,3686772,3686391,3685909,3685587,3685222,3684852,3684267	Putative nuclear pre-mRNA splicing factor, proline-rich.  Related to component of splicing factor 3b
chr12	3691112	3693536	3691155	3693500	+	RPS11	Cre12.g514500.t1.2		3691112,3691361,3691643,3691824,3692937,3693415	3691167,3691499,3691708,3691902,3693026,3693536	Cytosolic 40S small ribosomal subunit protein S11
chr12	3693546	3701951	3694012	3701731	-	Cre12.g514550.t1.1	Cre12.g514550.t1.1		3701689,3701531,3701376,3698932,3696903,3696530,3696096,3695061,3694632,3693546	3701951,3701603,3701468,3701268,3698754,3696770,3696326,3695870,3694766,3694387	
chr12	3702095	3707733	3702159	3707145	+	Cre12.g514600.t1.1	Cre12.g514600.t1.1		3702095,3702722,3703345,3703937,3704286,3704488,3704938,3705224,3705459,3705729,3706797	3702540,3703099,3703717,3704049,3704315,3704633,3705022,3705278,3705532,3705905,3707733	
chr12	3707736	3712941	3708150	3712709	-	CNK6	Cre12.g514650.t1.2		3712397,3711217,3710934,3710426,3708881,3708572,3707736	3712941,3711447,3711089,3710698,3710138,3708708,3708351	NimA-related protein kinase homolog 6 [gi:34334401, PMID: 15068267]; ts-lethal mutant arrests at S/M (PMID 29743196); null-allele mutant was isolated (PMID 29743196)
chr12	3713052	3717229	3713456	3716654	+	Cre12.g514700.t1.2	Cre12.g514700.t1.2		3713052,3713445,3713701,3713946,3714250,3714701,3715053,3715303,3715488,3715821,3716197	3713217,3713497,3713740,3714063,3714397,3714778,3715146,3715331,3715647,3715972,3717229	
chr12	3717332	3723387	3717658	3722841	+	CIS1	Cre12.g514750.t1.2		3717332,3717878,3718333,3718791,3719162,3719763,3720163,3720502,3720915,3721399,3721862,3722241,3722745	3717805,3717970,3718410,3718865,3719308,3719867,3720259,3720566,3721070,3721524,3721960,3722366,3723387	Citrate synthase (EC 2.3.3.1), mitochondrial form; similarity to carrot citrate synthase mitochondrial precursor (GenBank O8433)
chr12	3723525	3726661	3724261	3726226	-	Cre12.g514800.t1.1	Cre12.g514800.t1.1		3726088,3725888,3725527,3725205,3724581,3723525	3726661,3725973,3725626,3725287,3724743,3724378	
chr12	3726829	3732140	3726945	3731737	+	HSP90C	Cre12.g514850.t1.2		3726829,3727302,3727970,3728476,3728988,3729502,3730028,3730492,3730959,3731434	3726981,3727529,3728169,3728760,3729330,3729818,3730328,3730689,3731180,3732140	HSP90C is one of 3 HSP90 genes in Chlamydomonas; HSP90C is localized to the chloroplast; it is inducible by heat shock and light, forms dimers and interacts with plastidic HSP70B; it exhibits weak ATPase activity, which is inhibited by radicicol; PMID: 16143837 and 15995001
chr12	3732146	3733501	3732785	3733423	-	TIM10	Cre12.g514900.t1.2		3733325,3733203,3733033,3732146	3733501,3733241,3733102,3732830	Mitochondrial import inner membrane translocase subunit of 10 kDa
chr12	3736516	3746641	3738191	3746142	-	CGLD17	Cre12.g514950.t1.1		3743928,3743642,3743205,3742756,3742185,3741800,3741389,3741055,3740533,3740223,3739738,3739281,3736516	3746641,3743740,3743462,3742918,3742446,3742016,3741605,3741211,3740700,3740325,3740004,3739480,3739011	conserved protein related to Arabidopsis protein with Toprim domain
chr12	3747122	3752332	3747310	3750926	+	Cre12.g515000.t1.1	Cre12.g515000.t1.1		3747122,3747671,3748059,3750492	3747510,3747878,3750291,3752332	
chr12	3752646	3767621	3753697	3766866	-	Cre12.g515050.t1.1	Cre12.g515050.t1.1		3767469,3767138,3766701,3766358,3765686,3764200,3763418,3762821,3762408,3762099,3761786,3761459,3760756,3759339,3757882,3757668,3757347,3756759,3756269,3754226,3752646	3767621,3767279,3766893,3766483,3766198,3765304,3763917,3763013,3762600,3762210,3761912,3761629,3761257,3760592,3759079,3757736,3757441,3757029,3756558,3756099,3753978	Protein contains a SET domain with similarity to Arabidopsis thaliana ATX5, SET29, SDG29 (At5g53430); [PMID: 16100335]
chr12	3768542	3769163	3768667	3769112	+	Cre12.g515100.t1.2	Cre12.g515100.t1.2		3768542	3769163	
chr12	3769222	3770884	3769302	3770163	+	Cre12.g515150.t1.2	Cre12.g515150.t1.2		3769222,3769456,3769750,3770124	3769371,3769516,3769832,3770884	
chr12	3772048	3774891	3773186	3774676	-	DRC6	Cre12.g515200.t1.2		3774592,3774370,3773945,3773680,3772048	3774891,3774477,3774196,3773785,3773419	Flagellar Associated Protein, found in the flagellar proteome
chr12	3775032	3781215	3775205	3780714	+	ROC7	Cre12.g515250.t1.1		3775032,3776101,3776360,3779338,3779602,3780013,3780309	3775919,3776221,3779169,3779485,3779831,3780120,3781215	Circadian rhythm related protein of unknown function; in Matsuo et al. (2008), roc7 (rhythm of chloroplast) circadian rhythm mutant locus maps here
chr12	3781262	3790593	3781315	3789919	+	Cre12.g515301.t1.1	Cre12.g515301.t1.1		3781262,3781764,3782080,3782515,3782903,3784422,3784669,3785385,3786053,3786524,3786982,3787564,3787811,3788237,3788435,3788865,3789327,3789832	3781584,3781917,3782307,3782660,3784269,3784510,3785280,3785927,3786349,3786667,3787358,3787665,3787970,3788326,3788587,3789158,3789461,3790593	
chr12	3790652	3819563	3790972	3818231	+	Cre12.g515350.t1.1	Cre12.g515350.t1.1		3790652,3791397,3791556,3791931,3792345,3793084,3793602,3793830,3794142,3794408,3794740,3795004,3795220,3795660,3795940,3796321,3796535,3796831,3797096,3797237,3797439,3797713,3797965,3798214,3798433,3798694,3798880,3799270,3799624,3800008,3800231,3800399,3800647,3801146,3801342,3801581,3801812,3802165,3802445,3802833,3803199,3803512,3803653,3803850,3804235,3804614,3805613,3806439,3806774,3807783,3808058,3810358,3810639,3811470,3812002,3812426,3813229,3813536,3813839,3814397,3814633,3814973,3815280,3817656,3817931	3791078,3791430,3791794,3792176,3792613,3793466,3793711,3793983,3794260,3794558,3794855,3795113,3795291,3795786,3796120,3796408,3796604,3796924,3797117,3797282,3797519,3797743,3798079,3798316,3798523,3798715,3798940,3799351,3799645,3800055,3800251,3800450,3800698,3801166,3801393,3801598,3801903,3802228,3802575,3803055,3803261,3803539,3803715,3804079,3804465,3805392,3806249,3806625,3807594,3807945,3810195,3810525,3811379,3811864,3812161,3813134,3813417,3813704,3814195,3814471,3814855,3815149,3817475,3817802,3819563	
chr12	3790652	3819563	3791718	3818231	+	Cre12.g515350.t2.1	Cre12.g515350.t2.1		3790652,3791556,3791931,3792345,3793084,3793602,3793830,3794142,3794408,3794740,3795004,3795220,3795660,3795940,3796321,3796535,3796831,3797096,3797237,3797439,3797713,3797965,3798214,3798433,3798694,3798880,3799270,3799624,3800008,3800231,3800399,3800647,3801146,3801342,3801581,3801812,3802165,3802445,3802833,3803199,3803512,3803653,3803850,3804235,3804614,3805613,3806439,3806774,3807783,3808058,3810358,3810639,3811470,3812002,3812426,3813229,3813536,3813839,3814397,3814633,3814973,3815280,3817656,3817931	3791430,3791794,3792176,3792613,3793466,3793711,3793983,3794260,3794558,3794855,3795113,3795291,3795786,3796120,3796408,3796604,3796924,3797117,3797282,3797519,3797743,3798079,3798316,3798523,3798715,3798940,3799351,3799645,3800055,3800251,3800450,3800698,3801166,3801393,3801598,3801903,3802228,3802575,3803055,3803261,3803539,3803715,3804079,3804465,3805392,3806249,3806625,3807594,3807945,3810195,3810525,3811379,3811864,3812161,3813134,3813417,3813704,3814195,3814471,3814855,3815149,3817475,3817802,3819563	
chr12	3790652	3798303	3791718	3798214	+	Cre12.g515350.t3.1	Cre12.g515350.t3.1		3790652,3791556,3791931,3792345,3793084,3793602,3793830,3794142,3794408,3794740,3795004,3795220,3795660,3795940,3796321,3796535,3796831,3797215,3797439,3797713,3797965,3798214	3791430,3791794,3792176,3792613,3793466,3793711,3793983,3794260,3794558,3794855,3795113,3795291,3795786,3796120,3796408,3796604,3796924,3797282,3797519,3797743,3798079,3798303	
chr12	3820782	3836831	3821798	3836822	-	Cre12.g515400.t1.1	Cre12.g515400.t1.1		3836822,3836059,3835916,3835696,3835358,3834466,3833729,3833383,3832414,3832042,3829807,3829477,3828626,3828141,3827844,3826867,3826584,3826296,3825805,3825530,3825146,3824852,3824018,3822554,3822227,3820782	3836831,3836583,3835978,3835809,3835588,3835217,3834245,3833569,3833234,3832204,3831929,3829644,3829363,3828535,3828003,3827575,3826772,3826464,3826167,3825604,3825368,3825028,3824722,3823780,3822373,3822098	
chr12	3837043	3839141	3838512	3839063	-	Cre12.g515426.t1.1	Cre12.g515426.t1.1		3839045,3837043	3839141,3838893	
chr12	3849329	3853006	3851361	3852906	-	UBC22	Cre12.g515450.t1.1		3852837,3852293,3852050,3851882,3851565,3849329	3853006,3852410,3852105,3851923,3851701,3851404	
chr12	3853570	3865943	3854043	3865818	-	Cre12.g515500.t1.1	Cre12.g515500.t1.1		3865647,3865325,3864846,3864393,3863328,3862877,3862446,3859143,3858845,3857852,3853570	3865943,3865432,3865214,3864568,3864202,3863183,3862739,3862323,3859002,3858707,3857694	
chr12	3867228	3872963	3867590	3872767	-	VPS33	Cre12.g515550.t1.2		3872693,3872511,3872268,3871998,3871746,3871566,3870474,3870069,3869797,3869553,3869350,3869015,3868635,3868310,3867228	3872963,3872550,3872371,3872091,3871804,3871666,3870640,3870345,3869944,3869666,3869383,3869104,3868803,3868511,3868140	Expressed Protein. SM (Sec1 family) protein, binds SNAREs in the Vacuolar system; part of the VPS-C complex controlling vacuolar targeting; last exon may need to be split
chr12	3873074	3875545	3873489	3875520	+	Cre12.g515600.t1.1	Cre12.g515600.t1.1		3873074,3873669,3873988,3875217,3875436	3873550,3873737,3875114,3875363,3875545	
chr12	3873074	3875445	3873489	3875294	+	Cre12.g515600.t2.1	Cre12.g515600.t2.1		3873074,3873669,3873988,3875217	3873550,3873737,3875118,3875445	
chr12	3875548	3878042	3876203	3878015	-	EIF3K	Cre12.g515650.t1.2		3877937,3877648,3877345,3877058,3876701,3875548	3878042,3877824,3877453,3877182,3876777,3876297	putative Eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) (eIF3k); null-allele mutant was isolated (PMID 29743196)
chr12	3878174	3882268	3878403	3881559	+	Cre12.g515700.t1.2	Cre12.g515700.t1.2		3878174,3879234,3879937,3880275,3880526,3880757,3881043,3881364	3879049,3879536,3880064,3880386,3880611,3880892,3881194,3882268	
chr12	3888248	3892723	3889888	3892503	-	NTP5	Cre12.g515750.t1.1		3892325,3892140,3891812,3891604,3891393,3891111,3890929,3890220,3888248	3892723,3892203,3892022,3891667,3891452,3891262,3890980,3890754,3890072	
chr12	3892770	3895183	3893416	3894792	-	PCN1	Cre12.g515850.t1.2		3894957,3894545,3894176,3893785,3892770	3895183,3894796,3894476,3893956,3893503	Proliferating Cell Nuclear Antigen (PCNA) homolog
chr12	3896225	3901903	3896703	3901868	-	TOPBP1	Cre12.g515900.t1.2		3901688,3901504,3901132,3900769,3900489,3899939,3899630,3899251,3898925,3898604,3898312,3897903,3897228,3896948,3896225	3901903,3901581,3901316,3900951,3900575,3900392,3899779,3899507,3899074,3898812,3898399,3898140,3897779,3897121,3896838	
chr12	3902044	3907845	3902288	3907087	+	Cre12.g515901.t1.2	Cre12.g515901.t1.2		3902044,3902987,3905614	3902791,3905498,3907845	
chr12	3907848	3913573	3908508	3913507	-	Cre12.g515950.t1.2	Cre12.g515950.t1.2		3913368,3912983,3912694,3912480,3912218,3911886,3911608,3911391,3911161,3910797,3907848	3913573,3913164,3912804,3912580,3912326,3912065,3911680,3911474,3911266,3910938,3910605	
chr12	3913629	3916643	3914533	3915985	-	Cre12.g516000.t1.1	Cre12.g516000.t1.1		3916504,3916087,3915925,3915721,3915387,3914935,3914757,3913629	3916643,3916182,3915985,3915816,3915592,3915030,3914783,3914654	
chr12	3916784	3919077	3916916	3918635	+	Cre12.g516050.t1.2	Cre12.g516050.t1.2		3916784,3917461,3917748,3918178,3918476	3917201,3917619,3918036,3918350,3919077	
chr12	3919080	3920423	3919723	3920186	-	Cre12.g516100.t1.2	Cre12.g516100.t1.2		3919080	3920423	
chr12	3920524	3924573	3920695	3923963	+	Cre12.g516150.t1.2	Cre12.g516150.t1.2		3920524,3921176,3921655	3921022,3921426,3924573	Related to GCN5
chr12	3925139	3929685	3925214	3928823	+	EFG2	Cre12.g516200.t1.2		3925139,3925339,3925494,3925632,3926595,3927256,3927959	3925217,3925426,3925552,3926388,3926948,3927668,3929685	Putative cytosolic elongation factor 2 (EF-2), EF-TU; found in the flagellar proteome
chr12	3929814	3932415	3929852	3932136	+	Cre12.g516250.t1.2	Cre12.g516250.t1.2		3929814,3930290,3930588,3930867,3931298,3931583,3931968	3930008,3930391,3930710,3930965,3931441,3931738,3932415	
chr12	3932478	3943703	3933543	3943656	-	CGL154	Cre12.g516300.t1.1		3943518,3943084,3942916,3942692,3942241,3941836,3941496,3941244,3941038,3940753,3940572,3940310,3939915,3939432,3938705,3938410,3938033,3937723,3937484,3937262,3936995,3936770,3936530,3935648,3935290,3934983,3934694,3934292,3932478	3943703,3943238,3942974,3942764,3942471,3941975,3941645,3941358,3941096,3940849,3940614,3940434,3940113,3939714,3939177,3938520,3938237,3937862,3937594,3937377,3937108,3936881,3936613,3936241,3935474,3935022,3934829,3934525,3934106	
chr12	3943798	3948963	3944175	3948901	-	Cre12.g516333.t1.2	Cre12.g516333.t1.2		3948597,3948200,3947935,3946903,3946625,3943798	3948963,3948345,3947994,3947790,3946735,3946404	
chr12	3949074	3951915	3949395	3950911	+	COX10	Cre12.g516350.t1.2		3949074,3949814,3950098	3949584,3949951,3951915	Cytochrome c oxidase assembly protein cox10, putative heme A:farnesyltransferase
chr12	3952184	3956125	3952281	3955922	+	Cre12.g516400.t1.2	Cre12.g516400.t1.2		3952184,3952596,3952989,3955810	3952408,3952762,3954739,3956125	YT521-B-like family splicing factor.  The YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells and may be involved in suppressing gene regulation during gametogenesis
chr12	3952184	3956135	3952281	3954744	+	Cre12.g516400.t2.1	Cre12.g516400.t2.1		3952184,3952596,3952989	3952408,3952762,3956135	YT521-B-like family splicing factor.  The YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells and may be involved in suppressing gene regulation during gametogenesis
chr12	3956138	3957833	3956589	3957689	-	CAG1	Cre12.g516450.t1.2		3957565,3957335,3957052,3956138	3957833,3957478,3957248,3956814	NADH:ubiquinone oxidoreductase (Complex I) subunit; putative carbonic anhydrase (gamma-type) identical to AAS48195 (mitochondrial complex I subunit) [PMID: 15450959; PMID: 15710684]. Arabidopsis homologs erroneously described as ferripyochelin-binding proteins (FBP1)
chr12	3957943	3963740	3958080	3963223	+	CUL2	Cre12.g516500.t1.1		3957943,3958327,3958678,3958903,3959404,3959824,3960124,3960603,3960944,3961337,3961649,3961988,3962370,3962842,3963202	3958189,3958442,3958737,3959154,3959553,3959904,3960399,3960731,3961113,3961454,3961843,3962137,3962645,3963039,3963740	Cullin
chr12	3963794	3965705	3964117	3965297	+	GTR16	Cre12.g516550.t1.2		3963794	3965705	glycosyl transferase, possibly a beta-1,4-mannosyltransferase
chr12	3965708	3972533	3966582	3972077	-	Cre12.g516600.t1.1	Cre12.g516600.t1.1		3972174,3971867,3971528,3971110,3970908,3970705,3970421,3970216,3968163,3967516,3967277,3967055,3965708	3972533,3972084,3971766,3971340,3970962,3970737,3970566,3970327,3970093,3968039,3967434,3967092,3966859	Serine/Threonine Protein Kinase Homolog 6, putative
chr12	3972588	3979903	3973759	3979757	-	Cre12.g516650.t1.1	Cre12.g516650.t1.1		3979489,3979188,3978836,3978492,3978285,3978083,3977747,3977527,3975400,3974556,3974310,3974154,3972588	3979903,3979405,3979074,3978731,3978339,3978115,3977892,3977638,3977336,3975247,3974467,3974191,3974027	Serine/Threonine Protein Kinase Homolog 6, putative
chr12	3981439	3984823	3981965	3982651	-	Cre12.g516700.t1.2	Cre12.g516700.t1.2		3984159,3983886,3983634,3983378,3982616,3982222,3981439	3984823,3983971,3983673,3983523,3982765,3982353,3981987	Serine/Threonine Protein Kinase Homolog 6, putative
chr12	3981439	3984823	3981987	3984220	-	Cre12.g516717.t1.1	Cre12.g516717.t1.1		3983772,3983634,3983378,3982616,3982245,3981439	3984823,3983673,3983523,3982765,3982353,3981987	
chr12	3981439	3984823	3981987	3984220	-	Cre12.g516717.t2.1	Cre12.g516717.t2.1		3983772,3983634,3983378,3982616,3982222,3981439	3984823,3983673,3983523,3982765,3982353,3981987	
chr12	3986052	3993613	3986884	3993208	-	Cre12.g516750.t1.1	Cre12.g516750.t1.1		3992943,3992598,3992242,3991846,3991602,3991386,3991235,3991026,3990749,3988414,3987680,3987431,3987268,3986052	3993613,3992815,3992480,3992097,3991670,3991428,3991292,3991089,3990863,3990524,3988281,3987588,3987305,3987140	
chr12	3986194	3993613	3986884	3993208	-	Cre12.g516750.t2.1	Cre12.g516750.t2.1		3992943,3992598,3992242,3991846,3991602,3991386,3991235,3991026,3990749,3988414,3987680,3987431,3987268,3986194	3993613,3992815,3992480,3992097,3991670,3991428,3991292,3991089,3990863,3990524,3988281,3987588,3987305,3987140	
chr12	3993874	3999345	3994139	3999242	+	Cre12.g516800.t1.1	Cre12.g516800.t1.1		3993874,3994511,3994846,3995233,3995648,3996243,3996430,3996606,3996883,3997167,3999226	3994383,3994728,3995084,3995469,3995702,3996299,3996465,3996686,3997002,3999073,3999345	null-allele mutant was isolated (PMID 29743196)
chr12	3999354	4002303	4002040	4002263	-	Cre12.g516851.t1.1	Cre12.g516851.t1.1		3999354	4002303	
chr12	4004914	4007665	4005367	4007280	-	Cre12.g516900.t1.1	Cre12.g516900.t1.1		4007569,4007414,4007239,4006993,4006576,4006208,4005796,4004914	4007665,4007486,4007294,4007064,4006818,4006368,4005929,4005535	
chr12	4007766	4012247	4007927	4011528	+	SAS6	Cre12.g516950.t1.2		4007766,4008192,4008841,4009114,4009312,4009619,4009834,4010114,4010404,4010814	4008110,4008376,4008967,4009185,4009487,4009739,4010001,4010296,4010661,4012247	NCBI accession number BAF94334; PMID: 18082404
chr12	4012306	4019677	4012954	4018127	+	MAPKKK7	Cre12.g517000.t1.1		4012306,4012830,4013163,4013501,4013843,4013986,4014140,4014312,4014622,4016390,4016648,4017373,4017677,4017871	4012727,4013047,4013401,4013728,4013895,4014044,4014197,4014490,4016202,4016496,4017291,4017530,4017714,4019677	MAP3K7
chr12	4019682	4022251	4020415	4022040	-	FAP117	Cre12.g517050.t1.2		4021995,4021679,4021383,4021011,4019682	4022251,4021789,4021457,4021276,4020851	Flagellar Associated Protein, found in the flagellar proteome
chr12	4022383	4026529	4023139	4026459	-	Cre12.g517100.t1.1	Cre12.g517100.t1.1		4026451,4026228,4025372,4025021,4024647,4024245,4023851,4023459,4022383	4026529,4026279,4025493,4025090,4024784,4024326,4023918,4023615,4023228	
chr12	4026671	4030754	4026693	4030303	+	MET16	Cre12.g517150.t1.1		4026671,4026809,4026976,4027239,4027523,4027891,4028296,4029184,4029637,4029907,4030228	4026708,4026889,4027065,4027345,4027703,4027992,4028403,4029397,4029746,4030065,4030754	Iinvolved in sulfate assimilation; 3'-phosphoadenylsulfate reductase, APS reductase; not a PAPS reductase, based on presence of motifs described in PMID: 12072441
chr12	4031041	4033105	4031642	4032792	-	Cre12.g517200.t1.2	Cre12.g517200.t1.2		4032684,4032158,4031041	4033105,4032319,4031786	
chr12	4033266	4036095	4033625	4035849	-	Cre12.g517250.t1.1	Cre12.g517250.t1.1		4035688,4035260,4033960,4033266	4036095,4035464,4034841,4033757	
chr12	4036160	4042415	4037037	4042297	-	Cre12.g517300.t1.1	Cre12.g517300.t1.1		4042233,4042098,4040422,4040022,4037724,4036160	4042415,4042150,4041915,4040234,4039817,4037502	
chr12	4042516	4044894	4042632	4043790	+	LSD1	Cre12.g517350.t1.2		4042516,4042726,4042946,4043354,4043751	4042660,4042802,4043110,4043578,4044894	zinc-finger protein Lsd1. Lsd1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death [PMID: 9054508]
chr12	4046260	4048315	4046868	4048115	-	RAB5	Cre12.g517400.t1.2		4047989,4047830,4047682,4047407,4046260	4048315,4047897,4047732,4047528,4047110	Expressed Protein. Similar to the RabF/Rab5 type of small GTPase, involved in vesicle trafficking in the endosomal system; Found in the flagellar proteome [PMID: 15998802]; Similar to mammalian Rab5
chr12	4048370	4052095	4049321	4051957	-	Cre12.g517451.t1.1	Cre12.g517451.t1.1		4051719,4051087,4050783,4050479,4050101,4049895,4049686,4048370	4052095,4051604,4050887,4050637,4050278,4049941,4049772,4049507	
chr12	4052254	4056588	4052331	4056205	+	Cre12.g517500.t1.1	Cre12.g517500.t1.1		4052254,4052549,4052799,4054051,4054529,4054918,4055430,4055681,4055995	4052422,4052646,4053926,4054309,4054708,4055255,4055567,4055842,4056588	
chr12	4056628	4059214	4057243	4058365	-	Cre12.g517550.t1.1	Cre12.g517550.t1.1		4058661,4058287,4057895,4057480,4056628	4059214,4058400,4058125,4057592,4057343	null-allele passenger mutation was isolated (PMID 29743196)
chr12	4059555	4062404	4060104	4062012	+	Cre12.g517600.t1.2	Cre12.g517600.t1.2		4059555,4060069,4060334,4060565,4060937,4061185,4061503,4061841	4059738,4060201,4060386,4060777,4060990,4061323,4061702,4062404	
chr12	4062676	4069977	4062929	4069348	+	Cre12.g517650.t1.1	Cre12.g517650.t1.1		4062676,4063251,4063515,4063962,4064272,4069348	4063140,4063339,4063796,4064084,4069151,4069977	
chr12	4070174	4072705	4070998	4072454	-	Cre12.g517681.t1.2	Cre12.g517681.t1.2		4072404,4071245,4070174	4072705,4071350,4071115	
chr12	4072806	4077413	4073035	4076203	+	NYC1	Cre12.g517700.t1.2		4072806,4073562,4074038,4074455,4074813,4075617,4076095	4073285,4073839,4074199,4074599,4074955,4075865,4077413	CPLD25, conserved expressed protein of the short-chain dehydrogenase/reductase family; Non-Yellow Coloring 1, PMID: 17416733; null-allele passenger mutation was isolated (PMID 29743196)
chr12	4079406	4084957	4079477	4084375	+	Cre12.g517750.t1.1	Cre12.g517750.t1.1		4079406,4079883,4080932,4081529,4082058,4082285,4082410,4083030,4084153	4079652,4079924,4081330,4081689,4082150,4082327,4082848,4083192,4084957	
chr12	4085126	4088377	4085491	4087178	+	Cre12.g517800.t1.2	Cre12.g517800.t1.2		4085126,4085765,4086332,4086736	4085557,4085965,4086519,4088377	
chr12	4088426	4090761	4088580	4090229	+	Cre12.g517850.t1.1	Cre12.g517850.t1.1		4088426,4088897,4089275,4089886	4088709,4089097,4089477,4090761	
chr12	4090768	4099419	4091277	4099246	-	SECA1	Cre12.g517900.t1.1		4098844,4098014,4097534,4096721,4096320,4095894,4095539,4095143,4094862,4094466,4094113,4093749,4093424,4093067,4092689,4092368,4091974,4091636,4090768	4099419,4098280,4097638,4096864,4096433,4096004,4095707,4095336,4094933,4094606,4094271,4093880,4093582,4093257,4092827,4092454,4092174,4091754,4091461	SecA protein associated with import of proteins into chloroplast. Strong homology to SecA
chr12	4099516	4103897	4099848	4102124	+	Cre12.g517925.t1.1	Cre12.g517925.t1.1		4099516,4100242,4100522,4101620,4101993	4099994,4100360,4101486,4101737,4103897	
chr12	4105695	4109805	4106627	4109685	-	Cre12.g517950.t1.1	Cre12.g517950.t1.1		4109147,4108502,4108302,4107586,4107157,4106740,4105695	4109805,4108639,4108430,4108204,4107221,4106963,4106627	
chr12	4110000	4111145	4110753	4111045	-	Cre12.g517976.t1.1	Cre12.g517976.t1.1		4110000	4111145	
chr12	4113406	4118325	4113671	4117840	-	SECA2	Cre12.g518000.t2.1		4117735,4116905,4116424,4115576,4115174,4114938,4114747,4114392,4114036,4113406	4118325,4117171,4116528,4115719,4115288,4114984,4114857,4114560,4114046,4113878	SecA protein associated with import of proteins into chloroplast. Strong homology to SecA
chr12	4111925	4118325	4113591	4117840	-	SECA2	Cre12.g518000.t1.1		4117735,4116905,4116424,4115576,4115174,4114938,4114747,4114392,4114036,4113827,4111925	4118325,4117171,4116528,4115719,4115288,4114984,4114857,4114560,4114046,4113878,4113668	SecA protein associated with import of proteins into chloroplast. Strong homology to SecA
chr12	4111925	4113185	4112739	4113022	-	Cre12.g518002.t1.1	Cre12.g518002.t1.1		4111925	4113185	
chr12	4118426	4128062	4118726	4127618	+	FAP261	Cre12.g518050.t1.2		4118426,4119123,4120011,4120313,4120610,4121025,4121662,4122228,4122492,4122822,4123575,4123930,4124311,4124768,4125034,4125420,4126210,4126540,4126933,4127357	4118872,4119664,4120131,4120407,4120760,4121430,4122015,4122331,4122648,4123367,4123672,4124077,4124502,4124914,4125135,4125858,4126280,4126714,4127084,4128062	Flagellar Associated Protein, found in the flagellar proteome
chr12	4128116	4131087	4128150	4130619	+	Cre12.g518100.t1.1	Cre12.g518100.t1.1		4128116,4130307	4130100,4131087	
chr12	4131216	4146327	4131345	4145772	+	Cre12.g518107.t1.2	Cre12.g518107.t1.2		4131216,4131587,4132295,4132627,4132994,4133538,4133887,4134450,4134789,4135088,4135871,4136254,4136736,4137150,4137601,4138406,4138849,4139499,4139802,4140144,4140574,4141097,4141706,4142324	4131400,4131734,4132373,4132692,4133179,4133675,4134069,4134591,4134999,4135697,4135945,4136427,4136915,4137319,4137941,4138527,4139269,4139608,4139922,4140259,4140825,4141531,4142139,4146327	
chr12	4146386	4152247	4146715	4151432	+	Cre12.g518150.t1.1	Cre12.g518150.t1.1		4146386,4149146,4149650,4150062,4151234	4148808,4149464,4149793,4150997,4152247	homologs in Volvox carteri
chr12	4152255	4156205	4152756	4155956	-	DNJ3	Cre12.g518200.t1.1		4155566,4155274,4154787,4154471,4154244,4153529,4152255	4156205,4155360,4155082,4154540,4154318,4153989,4153000	DnaJ-like protein; Fusion protein containing a DnaJ domain (N-Ter) and a PDI domain (C-Ter), also present in other organisms. Similar to the ER resident ERdj5 protein from mammals.
chr12	4156374	4158627	4156687	4157908	+	Cre12.g518300.t1.2	Cre12.g518300.t1.2		4156374,4157161,4157743	4156862,4157225,4158627	Pre-mRNA splicing factor, related to Cwf18, may be part of the splicesome
chr12	4158630	4173925	4159951	4173308	-	CYG18	Cre12.g518350.t1.1		4173219,4173035,4172712,4172422,4172172,4171555,4170777,4170477,4170198,4169986,4166779,4166442,4166180,4165960,4165250,4164961,4164431,4163916,4163513,4163237,4162817,4162488,4161505,4161288,4161014,4160631,4160200,4158630	4173925,4173095,4172841,4172618,4172213,4171883,4171383,4170590,4170332,4170127,4169787,4166616,4166261,4166055,4165712,4165061,4164703,4164068,4163752,4163322,4162991,4162565,4162263,4161335,4161098,4160794,4160389,4160073	Protein has potential GAF domain and C-terminal domain similar to guanylyl cyclase family member (gcy-38) [Caenorhabditis elegans]; null-allele mutant was isolated (PMID 29743196)
chr12	4175711	4179299	4176139	4177794	+	Cre12.g518400.t1.2	Cre12.g518400.t1.2		4175711,4176079,4176667,4176928,4177219,4177495,4177704	4175928,4176468,4176829,4177012,4177294,4177609,4179299	
chr12	4179411	4182262	4179453	4179727	+	Cre12.g518450.t1.2	Cre12.g518450.t1.2		4179411	4182262	
chr12	4182573	4186212	4183381	4183703	+	Cre12.g518500.t1.1	Cre12.g518500.t1.1		4182573,4183348	4182737,4186212	
chr12	4186218	4200050	4186604	4199879	-	FAP54	Cre12.g518550.t1.1		4199333,4197493,4197182,4196581,4196033,4195257,4194906,4194439,4194118,4193707,4192736,4192191,4191801,4191542,4191058,4190662,4189828,4189314,4186218	4200050,4199085,4197311,4196948,4196350,4195742,4195115,4194684,4194275,4193930,4193562,4192538,4191980,4191637,4191321,4190811,4190427,4189682,4189169	found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation; together with FAP221, FAP46, FAP74, C1d-87 and calmodulin, form a single complex in the C1d projection; HC1 of C1d projection on central pair
chr12	4200144	4202942	4200981	4202188	+	BSD1	Cre12.g518650.t1.2		4200144,4200378,4200715	4200287,4200470,4202942	related to NAD(P)-dependent steroid dehydrogenase
chr12	4203178	4206890	4204093	4205708	-	Cre12.g518700.t1.1	Cre12.g518700.t1.1		4206227,4205879,4205585,4205036,4204612,4203178	4206890,4205946,4205749,4205119,4204928,4204352	
chr12	4207345	4211360	4208343	4210672	-	Cre12.g518750.t1.1	Cre12.g518750.t1.1		4211199,4210857,4210588,4209833,4209541,4209036,4207345	4211360,4210891,4210719,4209856,4209627,4209334,4208581	
chr12	4211475	4216590	4212139	4216565	-	Cre12.g518772.t1.2	Cre12.g518772.t1.2		4216526,4216381,4215913,4215560,4214606,4214040,4212760,4211475	4216590,4216392,4215976,4215571,4214718,4214183,4213550,4212464	
chr12	4216691	4222449	4216853	4220457	+	Cre12.g518800.t1.2	Cre12.g518800.t1.2		4216691,4217337,4217878,4218178,4218460,4218794,4219243,4219674,4220417	4216997,4217432,4218000,4218223,4218533,4218886,4219383,4220080,4222449	
chr12	4216691	4222449	4216853	4220756	+	Cre12.g518800.t2.1	Cre12.g518800.t2.1		4216691,4217337,4217878,4218178,4218460,4218794,4219243,4219674,4220716	4216997,4217432,4218000,4218223,4218533,4218886,4219383,4220080,4222449	
chr12	4222455	4224600	4223337	4224488	-	Cre12.g518851.t1.1	Cre12.g518851.t1.1		4224407,4224131,4224022,4223918,4222455	4224600,4224190,4224044,4223966,4223703	
chr12	4224721	4229146	4224843	4228528	+	Cre12.g518900.t1.2	Cre12.g518900.t1.2		4224721,4225089,4225397,4225771,4226395,4226816,4227271,4227572,4227925,4228351	4224975,4225178,4225469,4225919,4226426,4226969,4227386,4227664,4228048,4229146	Aldo/keto reductase with possible alcohol dehydrogenase activity
chr12	4229331	4232018	4229577	4231598	+	PGM13	Cre12.g518950.t1.2		4229331,4229809,4229960,4230200,4230672,4230943,4231204,4231469	4229666,4229864,4230046,4230489,4230730,4231053,4231333,4232018	
chr12	4232032	4234350	4232244	4234317	-	ASB2	Cre12.g519000.t1.1		4234219,4234092,4233880,4233569,4233372,4232982,4232513,4232032	4234350,4234143,4233943,4233704,4233422,4233141,4232681,4232312	
chr12	4234451	4236892	4234653	4236276	+	Cre12.g519050.t2.1	Cre12.g519050.t2.1		4234451,4235087,4235366,4235631,4236016	4234937,4235159,4235450,4235726,4236892	
chr12	4234448	4236722	4234653	4236276	+	Cre12.g519050.t1.1	Cre12.g519050.t1.1		4234448,4235087,4235366,4235631,4236016	4234937,4235159,4235450,4235726,4236722	
chr12	4236972	4241816	4237841	4241724	-	ACC1	Cre12.g519100.t1.2		4241460,4241302,4240995,4240292,4239716,4239013,4238532,4238194,4236972	4241816,4241376,4241222,4240447,4239922,4239161,4238658,4238356,4237969	Alpha-carboxyltransferase subunit of multimeric plastid enzyme
chr12	4241958	4250690	4242314	4250626	-	Cre12.g519150.t1.2	Cre12.g519150.t1.2		4250212,4249945,4249650,4249180,4248134,4247798,4247290,4246825,4246178,4245652,4244923,4244430,4244001,4243338,4242844,4241958	4250690,4249986,4249733,4249407,4248958,4247950,4247443,4246925,4246516,4245849,4245450,4244706,4244235,4243744,4243019,4242470	
chr12	4251046	4257910	4251596	4257851	-	EFT1a	Cre12.g519180.t1.1		4257815,4257653,4257444,4257279,4257093,4256761,4255188,4254826,4254542,4254194,4253951,4253298,4253087,4252731,4252015,4251046	4257910,4257699,4257573,4257356,4257207,4257002,4255862,4255023,4254695,4254387,4254106,4253534,4253154,4252869,4252572,4251851	Polyprotein of EF-Ts; Chloroplast small ribosomal subunit protein PSRP-7 and elongation factor Ts are encoded in this single transcript
chr12	4251046	4257910	4251596	4257851	-	EFT1a	Cre12.g519180.t2.1		4257815,4257653,4257444,4257279,4257093,4256761,4255188,4254826,4254542,4253951,4253298,4253087,4252731,4252015,4251046	4257910,4257699,4257573,4257356,4257207,4257002,4255862,4255023,4254695,4254060,4253534,4253154,4252869,4252572,4251851	Polyprotein of EF-Ts; Chloroplast small ribosomal subunit protein PSRP-7 and elongation factor Ts are encoded in this single transcript
chr12	4253709	4257910	4254533	4257851	-	EFT1a	Cre12.g519180.t4.1		4257815,4257653,4257444,4257279,4257093,4256761,4255188,4254826,4253709	4257910,4257699,4257573,4257356,4257207,4257002,4255862,4255023,4254695	Polyprotein of EF-Ts; Chloroplast small ribosomal subunit protein PSRP-7 and elongation factor Ts are encoded in this single transcript
chr12	4251046	4253660	4251596	4253610	-	EFT1a	Cre12.g519180.t3.1		4253580,4253298,4253087,4252731,4252015,4251046	4253660,4253534,4253154,4252869,4252572,4251851	Polyprotein of EF-Ts; Chloroplast small ribosomal subunit protein PSRP-7 and elongation factor Ts are encoded in this single transcript
chr12	4258011	4259987	4258113	4259386	+	TEF9	Cre12.g519300.t1.2		4258011,4258681,4259047	4258371,4258860,4259987	
chr12	4260295	4263730	4260875	4263524	-	PHB2	Cre12.g519350.t1.2		4263412,4263166,4263005,4262786,4262310,4261876,4261377,4261103,4260295	4263730,4263327,4263078,4262908,4262396,4261956,4261487,4261183,4260893	
chr12	4265032	4271610	4266206	4271549	-	Cre12.g519401.t1.1	Cre12.g519401.t1.1		4271519,4269735,4267679,4265032	4271610,4271441,4269558,4266258	
chr12	4271665	4274110	4272677	4274042	-	Cre12.g519450.t1.1	Cre12.g519450.t1.1		4273930,4273800,4273581,4273316,4272924,4271665	4274110,4273855,4273711,4273451,4273058,4272713	
chr12	4274159	4279660	4274996	4278972	-	CAX1	Cre12.g519500.t1.2		4278857,4278523,4278344,4277842,4277469,4277039,4276688,4275907,4275650,4275329,4274159	4279660,4278659,4278373,4278049,4277579,4277127,4276806,4276112,4275731,4275479,4275092	putative Ca2+/H+ antiporter [PMID: 15710683], related to fungi and plants Ca2+/H+ antiporters (CAX); related to yeast VCX1 (or Manganese resistance 1)
chr12	4279771	4285972	4280017	4285033	+	OPR53	Cre12.g519550.t1.1		4279771,4280242,4284361	4280128,4284171,4285972	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr12	4286031	4289776	4286355	4289015	+	Cre12.g519600.t1.1	Cre12.g519600.t1.1		4286031,4286554,4286885,4287226,4287635,4288104,4288268,4288571,4288768	4286394,4286691,4287086,4287316,4287839,4288175,4288300,4288605,4289776	
chr12	4289841	4293662	4290051	4292941	+	Cre12.g519651.t1.1	Cre12.g519651.t1.1		4289841,4290677,4291093,4291305,4291703,4292023,4292271,4292619	4290186,4290878,4291183,4291506,4291774,4292055,4292305,4293662	
chr12	4293875	4296900	4294852	4296867	-	Cre12.g519700.t1.1	Cre12.g519700.t1.1		4296533,4296393,4295645,4295185,4293875	4296900,4296462,4295765,4295316,4294981	
chr12	4297019	4300570	4297504	4300359	-	Cre12.g519750.t1.1	Cre12.g519750.t1.1		4300356,4299886,4299555,4299350,4298961,4298651,4298438,4298242,4297831,4297019	4300570,4300092,4299674,4299403,4299116,4298821,4298516,4298295,4298060,4297627	
chr12	4301871	4302702	4301902	4302392	+	Cre12.g519850.t1.2	Cre12.g519850.t1.2		4301871,4302217	4301985,4302702	
chr12	4302704	4308130	4302954	4308069	-	Cre12.g519900.t1.2	Cre12.g519900.t1.2		4307642,4307371,4306881,4306443,4306181,4305477,4305149,4304615,4303414,4302704	4308130,4307508,4307168,4306685,4306293,4305803,4305309,4304858,4303556,4303282	
chr12	4308231	4318802	4308464	4318419	+	FAP42	Cre12.g519950.t1.1		4308231,4308933,4309622,4309900,4311658,4313209,4313825,4314168,4314618,4315174,4315593	4308603,4309231,4309732,4311474,4312977,4313663,4313957,4314340,4314975,4315407,4318802	Found in the flagellar proteome; contains N-terminal calpain cysteine endopeptidase domain; null-allele mutant was isolated (PMID 29743196); C1b-350 component of C1b projection on central pair
chr12	4318851	4325142	4318880	4324687	+	Cre12.g520000.t1.1	Cre12.g520000.t1.1		4318851,4319072,4319326,4319471,4319743,4320074,4320301,4320649	4318979,4319232,4319374,4319579,4319869,4320122,4320480,4325142	
chr12	4326218	4329305	4326426	4328833	+	Cre12.g520050.t1.2	Cre12.g520050.t1.2		4326218,4326928,4327729,4328037,4328601	4326584,4327027,4327790,4328309,4329305	
chr12	4329332	4329887	4329534	4329802	-	Cre12.g520072.t1.2	Cre12.g520072.t1.2		4329332	4329887	
chr12	4329968	4341177	4332467	4340265	-	CYG66	Cre12.g520100.t1.1		4340907,4339817,4335930,4335638,4335215,4334997,4334623,4334107,4333803,4333538,4333309,4332722,4329968	4341177,4340777,4339657,4335739,4335380,4335048,4334677,4334433,4333935,4333618,4333376,4333060,4332542	
chr12	4341259	4348997	4341562	4348944	-	Cre12.g520150.t1.1	Cre12.g520150.t1.1		4348818,4348694,4348377,4347888,4347310,4346734,4346348,4345891,4345330,4345099,4344704,4344348,4343898,4343339,4342634,4342109,4341259	4348997,4348756,4348500,4347940,4347570,4346857,4346493,4345969,4345481,4345159,4344819,4344481,4344035,4343550,4343042,4342283,4341880	DEAH-box ATPase, putative RNA helicase, homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle.
chr12	4349052	4357587	4349177	4357260	-	Cre12.g520173.t1.2	Cre12.g520173.t1.2		4356126,4355904,4351956,4351614,4351120,4350112,4349654,4349052	4357587,4355987,4355723,4351825,4351358,4350953,4349914,4349534	
chr12	4357636	4361617	4358335	4361080	-	CPL8	Cre12.g520200.t1.1		4361524,4360745,4360390,4359811,4359465,4358772,4357636	4361617,4361248,4360488,4360021,4359521,4359086,4358431	Pyridoxamine 5'-phosphate oxidase-like protein, but enzymatic activity is unproven
chr12	4361689	4365177	4362442	4365039	-	PAF1	Cre12.g520250.t1.2		4364535,4363231,4361689	4365177,4364124,4362670	RNA polymerase II-associated regulator (ChromoDB PAFA341); The PAF1 complex regulates cleavage and polyadenylation of mRNA, governs polyA site selection, controls the export of nascent transcripts, chromatin structure by promoting several cotranscriptional histone modifications; can be recruited to genes by transcriptional activators and through interactions with the Pol II elongation machinery; can function to maintain promoter-proximal pausing of Pol II or to promote release from pausing, depending upon the genetic context.
chr12	4365269	4369069	4365419	4368527	+	Cre12.g520300.t1.2	Cre12.g520300.t1.2		4365269,4365754,4366099,4366361,4366757	4365555,4365914,4366185,4366504,4369069	
chr12	4369101	4374317	4369770	4374202	-	ALD1	Cre12.g520350.t1.2		4374051,4373739,4373444,4372977,4372432,4371926,4371542,4371345,4370986,4370635,4370109,4369101	4374317,4373827,4373526,4373148,4372620,4372114,4371628,4371403,4371128,4370792,4370280,4369925	
chr12	4374418	4376489	4374607	4376140	+	MRPL4	Cre12.g520400.t1.2		4374418,4375974	4375725,4376489	
chr12	4376494	4383437	4376992	4383222	-	SGT1	Cre12.g520450.t1.1		4383062,4382737,4382516,4382246,4382010,4381711,4381414,4380712,4380371,4380160,4379842,4379445,4379327,4378756,4378513,4378150,4377810,4376494	4383437,4382849,4382590,4382339,4382107,4381803,4381564,4380904,4380585,4380305,4379995,4379626,4379359,4378884,4378587,4378278,4377980,4377682	
chr12	4376494	4383437	4376992	4383222	-	SGT1	Cre12.g520450.t2.1		4383062,4382737,4382516,4382246,4382010,4381711,4381414,4379445,4378756,4378513,4378150,4377810,4376494	4383437,4382849,4382590,4382339,4382107,4381803,4381564,4379626,4378884,4378587,4378278,4377980,4377682	
chr12	4384393	4386511	4384630	4386269	+	RPP0	Cre12.g520500.t1.1		4384393,4384627,4384768,4385081,4385428,4386122	4384454,4384669,4384866,4385257,4385928,4386511	Cytosolic 80S acidic ribosomal protein P0; Cytosolic 60S large ribosomal subunit protein P0
chr12	4386558	4392565	4387174	4392540	+	TRN1	Cre12.g520550.t1.2		4386558,4387372,4387643,4388070,4388437,4388821,4389294,4389552,4389939,4390266,4390654,4390998,4391545,4391910,4392305	4387264,4387464,4387729,4388255,4388630,4389100,4389406,4389744,4390131,4390450,4390836,4391392,4391774,4392132,4392565	Similar to transportin, a member of the importin beta superfamily
chr12	4393059	4394588	4393558	4394548	-	PRPS6	Cre12.g520600.t1.2		4394392,4394243,4394114,4393895,4393059	4394588,4394310,4394161,4393999,4393697	imported to chloroplast; Chloroplast Small Ribosomal Subunit Protein S6
chr12	4394688	4397677	4394841	4396895	+	TLP1	Cre12.g520650.t1.2		4394688,4394941,4395159,4396279,4396553,4396790	4394855,4395059,4396095,4396348,4396663,4397677	
chr12	4399262	4400887	4400076	4400826	-	Cre12.g520700.t1.2	Cre12.g520700.t1.2		4400379,4399262	4400887,4400076	
chr12	4401153	4402867	4401504	4402738	-	Cre12.g520750.t1.1	Cre12.g520750.t1.1		4401153	4402867	
chr12	4402922	4405217	4403772	4404943	-	Cre12.g520800.t1.2	Cre12.g520800.t1.2		4404820,4404230,4402922	4405217,4404757,4403772	
chr12	4407348	4409179	4407408	4408292	+	Cre12.g520850.t1.2	Cre12.g520850.t1.2		4407348,4407503,4407668,4408081	4407428,4407600,4407764,4409179	
chr12	4409228	4411829	4409284	4411204	+	Cre12.g520900.t1.2	Cre12.g520900.t1.2		4409228,4409593	4409530,4411829	
chr12	4411835	4417144	4412164	4417013	-	DIC4	Cre12.g520950.t1.1		4416859,4416704,4416310,4415958,4415697,4415358,4414952,4414555,4413219,4412583,4411835	4417144,4416783,4416529,4416170,4415782,4415507,4415198,4414741,4414329,4413056,4412416	IC138 intermediate chain of I1/f dynein; a WD-repeat dynein intermediate chain required for light chain assembly and regulation of flagellar bending PMID:15469982
chr12	4417847	4419563	4418526	4419382	-	Cre12.g521000.t1.1	Cre12.g521000.t1.1		4419303,4418964,4417847	4419563,4419139,4418766	
chr12	4419674	4422287	4420102	4421979	-	Cre12.g521050.t1.2	Cre12.g521050.t1.2		4421867,4421634,4421314,4421058,4420774,4420348,4419674	4422287,4421774,4421467,4421172,4420895,4420578,4420232	
chr12	4422418	4425229	4422816	4424713	+	Cre12.g521100.t1.1	Cre12.g521100.t1.1		4422418,4422766,4423075,4423330,4423554,4423812,4424155,4424406,4424664	4422673,4422948,4423164,4423350,4423725,4424046,4424293,4424533,4425229	
chr12	4426108	4429937	4427094	4429627	-	CGL19	Cre12.g521150.t1.2		4429749,4429352,4429100,4428199,4426108	4429937,4429638,4429199,4428819,4427973	
chr12	4429992	4438667	4430834	4438503	-	RFC1	Cre12.g521200.t1.2		4438500,4438309,4438172,4437769,4437383,4436818,4436454,4436208,4435666,4435087,4434640,4434250,4433841,4433457,4433071,4432584,4432132,4431707,4431338,4429992	4438667,4438411,4438206,4438070,4437509,4437123,4436642,4436285,4435857,4435473,4434782,4434464,4434049,4433561,4433260,4432788,4432359,4431814,4431494,4431104	Homologous to eukaryotic RFC1 (DNA replication factor C complex subunit 1); accessory protein of DNA polymerase.
chr12	4438818	4441949	4438914	4441520	+	PPE1	Cre12.g521250.t1.2		4438818,4439424,4439878,4440062,4440552,4441057,4441325	4439210,4439540,4439953,4440386,4440865,4441131,4441949	Putative mitochondrial ribosomal protein Ppe1
chr12	4441997	4444409	4442099	4442984	+	Cre12.g521300.t1.2	Cre12.g521300.t1.2		4441997,4442569,4442860	4442189,4442681,4444409	
chr12	4444743	4445507	4445013	4445371	-	Cre12.g521336.t1.2	Cre12.g521336.t1.2		4444743	4445507	
chr12	4445752	4449864	4446044	4449637	-	SLY1	Cre12.g521350.t1.2		4449609,4449019,4448438,4447798,4447424,4447045,4446618,4445752	4449864,4449086,4448854,4448244,4447606,4447246,4446872,4446367	Expressed Protein. SM (Sec1 family) protein, binds to SNAREs in the ER Golgi system
chr12	4449998	4455618	4450064	4454842	+	Cre12.g521400.t1.2	Cre12.g521400.t1.2		4449998,4450196,4450390,4451531,4453698,4454283	4450129,4450242,4451235,4453560,4454134,4455618	
chr12	4455668	4458133	4455767	4457523	+	CLPP2	Cre12.g521450.t1.1		4455668,4455886,4456192,4456377,4456715,4456902,4457159,4457413	4455787,4455994,4456260,4456471,4456763,4456961,4457204,4458133	
chr12	4458248	4463259	4458681	4462161	+	Cre12.g521500.t1.1	Cre12.g521500.t1.1		4458248,4458644,4459042,4459308,4459539,4460211,4460601	4458529,4458805,4459149,4459360,4460040,4460446,4463259	
chr12	4463368	4469379	4463510	4469223	+	Cre12.g521550.t1.1	Cre12.g521550.t1.1		4463368,4463872,4464237,4464672,4464921,4465466,4465765,4466230,4466500,4467267,4467736,4468112,4468866,4469133	4463642,4464041,4464526,4464783,4465318,4465639,4465862,4466316,4467043,4467619,4467894,4468690,4468928,4469379	
chr12	4469381	4472357	4470086	4472270	-	Cre12.g521600.t1.1	Cre12.g521600.t1.1		4472079,4471808,4471400,4470909,4470574,4469381	4472357,4471898,4471534,4471052,4470635,4470237	Related to TRAF and TNF receptor associated protein
chr12	4472422	4480947	4472975	4480208	-	Cre12.g521650.t1.2	Cre12.g521650.t1.2		4479104,4478630,4478330,4477881,4477353,4476853,4476353,4475765,4475392,4474955,4474648,4473990,4473386,4472422	4480947,4478852,4478416,4478007,4477566,4476975,4476523,4476074,4475486,4475107,4474713,4474133,4473562,4473101	
chr12	4481108	4489086	4481395	4488448	+	SSS6	Cre12.g521700.t1.2		4481108,4482068,4483873,4484474,4484954,4485426,4485780,4486132,4486660,4487072,4487720,4488064	4481765,4483557,4484091,4484602,4485130,4485506,4485903,4486298,4486775,4487301,4487802,4489086	ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase
chr12	4489587	4498652	4490051	4498381	-	Cre12.g521750.t1.2	Cre12.g521750.t1.2		4497910,4497524,4496868,4496150,4495800,4494826,4494690,4494338,4494032,4493663,4493199,4492769,4492411,4491956,4491647,4490960,4489587	4498652,4497634,4497122,4496493,4495872,4495497,4494739,4494395,4494148,4493795,4493395,4492937,4492558,4492121,4491737,4491285,4490759	
chr12	4498793	4504354	4498916	4504271	+	Cre12.g521800.t1.2	Cre12.g521800.t1.2		4498793,4501243,4502303	4500948,4502021,4504354	
chr12	4504413	4506774	4504589	4506662	+	Cre12.g521851.t1.1	Cre12.g521851.t1.1		4504413,4504983,4505312,4505725,4506197,4506599	4504834,4505008,4505368,4505877,4506294,4506774	null-allele mutant was isolated (PMID 29743196)
chr12	4506823	4511334	4507250	4510174	+	Cre12.g521900.t1.1	Cre12.g521900.t1.1		4506823,4507376,4507682,4508205,4508501,4508809,4509238,4509630,4510001	4507285,4507508,4507977,4508332,4508530,4508956,4509383,4509665,4511334	
chr12	4511383	4515894	4511692	4514881	+	Cre12.g521950.t1.1	Cre12.g521950.t1.1		4511383,4511788,4512146,4512606,4512986,4513402,4513837,4514258,4514512	4511703,4511914,4512352,4512683,4513138,4513622,4513926,4514369,4515894	
chr12	4515897	4524782	4516568	4524691	-	Cre12.g522000.t1.1	Cre12.g522000.t1.1		4524592,4522989,4522373,4521850,4520804,4520400,4520059,4519685,4519218,4518790,4518528,4517981,4515897	4524782,4524164,4522786,4522023,4521673,4520537,4520145,4519822,4519340,4518951,4518593,4518349,4517792	
chr12	4515897	4524782	4516568	4524275	-	Cre12.g522000.t2.1	Cre12.g522000.t2.1		4524248,4522989,4522373,4521850,4520804,4520400,4520059,4519685,4519218,4518790,4518528,4517981,4515897	4524782,4524164,4522786,4522023,4521673,4520537,4520145,4519822,4519340,4518951,4518593,4518349,4517792	
chr12	4524847	4530366	4525198	4530274	-	Cre12.g522050.t1.2	Cre12.g522050.t1.2		4529686,4529321,4528995,4528536,4527884,4527032,4526452,4526019,4525636,4524847	4530366,4529431,4529123,4528606,4528040,4527568,4526644,4526122,4525728,4525384	
chr12	4530513	4534573	4530619	4533593	+	Cre12.g522100.t1.1	Cre12.g522100.t1.1		4530513,4531407,4531850,4532248,4532597,4532927,4533233	4530790,4531511,4532036,4532313,4532676,4533010,4534573	
chr12	4534806	4538306	4534979	4537924	+	FAP194	Cre12.g522150.t1.1		4534806,4535310,4535545,4535928,4536299,4536569,4537333,4537703	4535099,4535415,4535751,4536091,4536387,4537211,4537498,4538306	Armadillo-repeat protein, similar to PF16; found in the flagellar proteome
chr12	4538317	4543822	4538800	4543465	-	Cre12.g522200.t1.2	Cre12.g522200.t1.2		4543387,4541883,4540949,4538317	4543822,4543190,4541658,4540742	
chr12	4543953	4552969	4544245	4552160	+	Cre12.g522250.t1.2	Cre12.g522250.t1.2		4543953,4544520,4544952,4545871,4546324,4546831,4547426,4547833,4548201,4548604,4549058,4549546,4550038,4550420,4551849	4544397,4544602,4545574,4546029,4546590,4547142,4547587,4547972,4548339,4548710,4549176,4549749,4550152,4551606,4552969	
chr12	4553197	4561162	4554007	4560921	-	Cre12.g522300.t1.1	Cre12.g522300.t1.1		4560898,4560691,4560378,4560062,4559634,4559248,4558948,4558620,4558225,4557520,4557142,4556669,4556236,4555876,4555055,4554575,4554344,4553197	4561162,4560820,4560468,4560141,4559766,4559396,4559070,4558766,4558447,4558034,4557357,4556954,4556468,4556028,4555651,4554904,4554466,4554223	
chr12	4561313	4565885	4561395	4564850	+	TSW1	Cre12.g522350.t1.2		4561313,4561549,4561751,4562399,4562934,4563399,4563700,4564110,4564410,4564722	4561452,4561617,4561788,4562528,4563098,4563508,4563871,4564283,4564578,4565885	
chr12	4566963	4574197	4567712	4573274	+	Cre12.g522400.t1.1	Cre12.g522400.t1.1		4566963,4567814,4567934,4568092,4568249,4568473,4568642,4568915,4569656,4570943,4571290,4571845,4572528	4567733,4567864,4568020,4568138,4568339,4568511,4568794,4569512,4570812,4571138,4571673,4572405,4574197	
chr12	4574743	4581164	4574865	4580531	+	SEC31	Cre12.g522450.t1.2		4574743,4575102,4575316,4575741,4576172,4576466,4577261,4577685,4578089,4578509,4578849,4579116,4580289	4574991,4575224,4575570,4576052,4576315,4577108,4577494,4577914,4578364,4578694,4578974,4580160,4581164	Expressed Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec13/31 sub-complex.
chr12	4581433	4585536	4582441	4585121	+	Cre12.g522500.t1.1	Cre12.g522500.t1.1		4581433,4581787,4582395	4581661,4581942,4585536	
chr12	4587270	4591504	4587418	4591468	+	FLA8	Cre12.g522550.t1.2		4587270,4588198,4588460,4588946,4589237,4589486,4589820,4590108,4590380,4590730,4590993,4591444	4587988,4588308,4588628,4589112,4589317,4589680,4589969,4590253,4590572,4590825,4591268,4591504	Kinesin heavy chain, kinesin-2 (KRP85/95) family; probable subunit of kinesin-II, the anterograde motor for intraflagellar transport
chr12	4591507	4593282	4592288	4593130	-	CYC2	Cre12.g522600.t1.2		4593087,4592908,4592594,4591507	4593282,4592975,4592727,4592382	mitochondrial apocytochrome c [gi:117971; PMID: 2853233]
chr12	4598273	4600312	4599310	4599642	-	Cre12.g522626.t1.1	Cre12.g522626.t1.1		4599566,4598273	4600312,4599474	
chr12	4601253	4605958	4601595	4605181	+	Cre12.g522650.t1.1	Cre12.g522650.t1.1		4601253,4602161,4602494,4602813,4604821	4602002,4602367,4602662,4604633,4605958	null-allele mutant was isolated (PMID 29743196)
chr12	4606243	4612234	4606378	4612145	+	Cre12.g522700.t1.2	Cre12.g522700.t1.2		4606243,4606610,4607416,4608061,4610773,4611697	4606468,4607214,4607733,4610622,4611477,4612234	
chr12	4612283	4617697	4612988	4617311	+	Cre12.g522750.t1.1	Cre12.g522750.t1.1		4612283,4612927,4613788,4614332,4614829,4615205,4615723,4616322,4616605,4617041	4612573,4613428,4613959,4614502,4614917,4615337,4615814,4616408,4616659,4617697	
chr12	4619013	4622475	4619157	4621596	+	Cre12.g522800.t1.2	Cre12.g522800.t1.2		4619013,4619624,4620266,4621287	4619187,4619815,4621090,4622475	
chr12	4622487	4630272	4622747	4630237	-	HEL55	Cre12.g522850.t1.2		4630087,4629716,4629004,4628652,4628188,4627612,4627358,4626913,4626543,4625949,4625473,4624711,4624053,4622487	4630272,4629820,4629414,4628737,4628356,4627733,4627424,4627090,4626742,4626107,4625655,4624811,4624254,4623725	
chr12	4630373	4632075	4630827	4631568	+	LYR4	Cre12.g522900.t1.2		4630373,4630768,4631414	4630575,4630925,4632075	Proteins in this family have been identified as a component of the higher eukaryotic NADH complex
chr12	4632807	4635924	4633009	4635332	+	MIND1	Cre12.g522950.t1.2		4632807,4633168,4633284,4633703,4633870,4634255,4634590,4634861,4635155	4633092,4633210,4633511,4633734,4634019,4634425,4634683,4634938,4635924	Putative chloroplast septum site-determining protein MinD. Chloroplast-encoded in other Chlorophyte algae.
chr12	4638323	4642774	4638830	4641303	+	Cre12.g523000.t1.1	Cre12.g523000.t1.1		4638323,4639308,4640702	4638957,4639386,4642774	
chr12	4642823	4645911	4642916	4643091	+	Cre12.g523026.t1.1	Cre12.g523026.t1.1		4642823	4645911	
chr12	4646701	4661544	4647985	4660991	-	CCT11	Cre12.g523050.t1.1		4661163,4660944,4660594,4660230,4659828,4659511,4659180,4658860,4657632,4657197,4655999,4655678,4655285,4654939,4654543,4653594,4652368,4650790,4650383,4649828,4649437,4648940,4648454,4646701	4661544,4661052,4660690,4660426,4660017,4659624,4659254,4658964,4658574,4657432,4657041,4655807,4655407,4655065,4654712,4654275,4653420,4652210,4650508,4650088,4649571,4649059,4648537,4648174	Putative T-complex protein 1 component, probably a 1-phosphatidylinositol-3-phosphate 5-kinase or 1-phosphatidylinositol-4-phosphate 5-kinase; ts-lethal mutant was isolated (PMID 29743196)
chr12	4661689	4666364	4662375	4666213	-	Cre12.g523100.t1.1	Cre12.g523100.t1.1		4666126,4665967,4665726,4665538,4665229,4664982,4664742,4664498,4664241,4663929,4663539,4663216,4662993,4662853,4661689	4666364,4665996,4665867,4665626,4665350,4665068,4664883,4664575,4664387,4664118,4663800,4663381,4663043,4662879,4662690	
chr12	4666503	4668506	4666678	4668006	+	PFD5	Cre12.g523150.t1.2		4666503,4667013,4667571,4667922	4666862,4667116,4667648,4668506	alpha-type subunit of molecular chaperone Prefoldin (PMID: 11599560); KE2 Family protein; contains two coiled-coil domain separated by a beta-sheet; stabilizes polypeptide chains prior to folding within CCT chaperonin, in particular tubulin
chr12	4668508	4672350	4669068	4672121	-	NURF55	Cre12.g523200.t1.1		4672102,4671924,4671784,4671037,4670815,4670440,4670065,4669722,4669384,4668508	4672350,4672001,4671839,4671531,4670862,4670536,4670165,4669892,4669521,4669122	Nucleosome remodeling factor, ChromDB NFC3401; a member of the nucleosome/chromatin assembly factor group C (RBP4/7 homolog); highly similar to human RbBp48 (Retinoblastoma binding protein) - a WD-40 protein found in several chromatin regulatory complexes. Similar to Drosophila Caf1 (Chromatin assembly factor 1 p55 subunit) (Nucleosome-remodeling factor 55 kDa subunit) (NURF-55)
chr12	4672505	4678043	4672786	4677066	+	Cre12.g523250.t1.1	Cre12.g523250.t1.1		4672505,4672775,4672958,4673395,4673812,4674366,4674881,4675227,4675608,4676025,4676567,4676883	4672666,4672809,4673129,4673517,4673955,4674560,4674937,4675392,4675708,4676156,4676713,4678043	
chr12	4678049	4679394	4678306	4679359	-	Cre12.g523276.t1.1	Cre12.g523276.t1.1		4678836,4678049	4679394,4678770	
chr12	4679775	4686176	4679915	4685677	+	GTR22	Cre12.g523300.t1.2		4679775,4680098,4680316,4680570,4681763,4682180,4682488,4682804,4683141,4683504,4683970,4684349,4684784,4685189,4685581	4680002,4680226,4680348,4680800,4681921,4682335,4682586,4682867,4683256,4683577,4684108,4684493,4684908,4685341,4686176	similar to ribophorin I, an essential subunit of oligosaccharyltransferase (OST), a glycosyl transferase which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC 2.4.1.119]; catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides
chr12	4688285	4692756	4688970	4692332	+	Cre12.g523320.t1.1	Cre12.g523320.t1.1		4688285,4689200,4690084,4691208,4692332	4689109,4689285,4690786,4691910,4692756	
chr12	4688285	4692756	4688970	4692332	+	Cre12.g523320.t2.1	Cre12.g523320.t2.1		4688285,4689200,4690084,4691208,4691959,4692332	4689109,4689285,4690786,4691910,4692097,4692756	
chr12	4692955	4695325	4693349	4694815	+	Cre12.g523340.t2.1	Cre12.g523340.t2.1		4692955,4694249,4694719	4693355,4694464,4695325	
chr12	4692873	4695325	4693148	4694815	+	Cre12.g523340.t1.1	Cre12.g523340.t1.1		4692873,4694366,4694719	4693199,4694464,4695325	
chr12	4695375	4701326	4695517	4701304	+	Cre12.g523400.t1.1	Cre12.g523400.t1.1		4695375,4695921,4696342,4696830,4697191,4697526,4697926,4698593,4698951,4699209,4699591,4699938,4700533,4700927,4701286	4695584,4696075,4696622,4696931,4697327,4697695,4698134,4698671,4699036,4699293,4699674,4700096,4700677,4701075,4701326	
chr12	4703745	4706483	4704405	4706255	-	DER1	Cre12.g523500.t1.2		4706069,4705816,4705127,4703745	4706483,4705878,4705312,4704744	
chr12	4706585	4709266	4706699	4708846	+	UMM11	Cre12.g523550.t1.1		4706585,4707382,4707725,4708221,4708539,4708727	4707126,4707489,4707885,4708310,4708599,4709266	
chr12	4709475	4722166	4710197	4721656	+	Cre12.g523600.t1.1	Cre12.g523600.t1.1		4709475,4710107,4710432,4710798,4711396,4713654,4716709,4717131,4717433,4717722,4718033,4718496,4718792,4719161,4719650,4719891	4709707,4710338,4710682,4711170,4713508,4716595,4717047,4717349,4717606,4717930,4718390,4718683,4719045,4719519,4719756,4722166	
chr12	4722169	4726184	4722187	4725970	-	HLM19	Cre12.g523650.t1.2		4725465,4724910,4724077,4723690,4722169	4726184,4725236,4724675,4723770,4723468	
chr12	4726505	4729589	4726975	4729117	+	Cre12.g523700.t1.2	Cre12.g523700.t1.2		4726505,4726905,4727078,4727194,4727514,4727859,4728290,4729055	4726782,4726981,4727120,4727308,4727575,4728131,4728865,4729589	
chr12	4729645	4735596	4729864	4734519	+	Cre12.g523750.t1.1	Cre12.g523750.t1.1		4729645,4730296,4730769,4731750,4732148,4732560	4729888,4730406,4731467,4731932,4732291,4735596	
chr12	4735645	4738266	4736001	4737434	+	Cre12.g523800.t1.1	Cre12.g523800.t1.1		4735645,4736187,4736544,4737097,4737365	4736061,4736256,4736690,4737212,4738266	
chr12	4738399	4740876	4738948	4739955	+	Cre12.g523816.t1.1	Cre12.g523816.t1.1		4738399,4738827,4739380,4739648	4738539,4738973,4739479,4740876	May contain additional coding sequence PMID: 27175017
chr12	4740925	4743313	4741421	4742968	+	Cre12.g523832.t1.1	Cre12.g523832.t1.1		4740925,4741607,4741964,4742517,4742785	4741481,4741676,4742110,4742632,4743313	
chr12	4743385	4747035	4743435	4746342	+	QCR1	Cre12.g523850.t1.2		4743385,4743743,4743979,4744440,4745033,4745360,4745677,4746121	4743615,4743904,4744194,4744604,4745149,4745498,4745964,4747035	Core I subunit of mitochondrial Complex III (ubiquinol:cytochrome c oxidoreductase) [PMID: 12746537]; putative mitochondrial processing peptidase, beta subunit (MPPB), identified in proteomic survey of mitochondrial membranes [PMID: 15710684]
chr12	4747085	4748656	4747178	4748170	+	Cre12.g523900.t1.1	Cre12.g523900.t1.1		4747085,4747352,4747649,4747961,4748144	4747244,4747459,4747745,4748026,4748656	
chr12	4748677	4751534	4749372	4751451	-	Cre12.g523950.t1.2	Cre12.g523950.t1.2		4750911,4749958,4748677	4751534,4750284,4749789	
chr12	4752775	4766776	4753112	4765695	+	SUC1	Cre12.g524000.t1.2		4752775,4753784,4754227,4754665,4755187,4755775,4756540,4756823,4757324,4757811,4758249,4758691,4759038,4759892,4760249,4760574,4760879,4761328,4762021,4763043,4763518,4764072,4764345,4764766	4753166,4753948,4754475,4754904,4755406,4756292,4756632,4757118,4757540,4757971,4758489,4758844,4759639,4760035,4760359,4760654,4761081,4761784,4762812,4763366,4763847,4764248,4764534,4766776	
chr12	4766779	4773634	4767589	4773499	-	Cre12.g524050.t1.1	Cre12.g524050.t1.1		4773400,4773181,4772925,4772748,4770347,4769724,4766779	4773634,4773225,4772990,4772799,4772589,4770096,4769568	
chr12	4773745	4782556	4774032	4781954	+	CBP80	Cre12.g524100.t1.2		4773745,4774615,4775117,4775980,4776381,4776933,4777342,4777883,4778460,4778853,4779461,4779981,4780510,4781081,4781672	4774422,4774774,4775702,4776158,4776558,4777113,4777599,4778128,4778669,4778945,4779664,4780306,4780642,4781245,4782556	best chlamy 3.0 hit for the possible human CBP80 ortholog: Large subunit of the nuclear mRNA cap-binding protein complex, interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm also involved in nuclear mRNA degradation and telomere maintenance; orthologous to Sto1p [Saccharomyces cerevisiae]. Homology to nr_b_b_8515771 mRNA cap-binding protein (ABH1) Arabidopsis thaliana
chr12	4782579	4792614	4782956	4791905	-	POLH2	Cre12.g524150.t1.1		4792377,4791815,4791475,4791070,4790823,4790092,4788969,4788339,4787651,4786621,4783466,4782579	4792614,4792138,4791576,4791146,4790877,4790565,4789800,4788482,4787832,4786838,4786259,4783169	Homologous to eukaryotic DNA polymerase eta; Xeroderma pigmentosum complementation group Variant (XPV); Rad30; Chlamydomonas has at least two homologues of Rad30; null-allele mutant was isolated (PMID 29743196)
chr12	4782579	4792614	4782956	4791905	-	POLH2	Cre12.g524150.t2.1		4792459,4791815,4791475,4791070,4790823,4790092,4788969,4788339,4787651,4786621,4783466,4782579	4792614,4792138,4791576,4791146,4790877,4790565,4789800,4788482,4787832,4786838,4786259,4783169	Homologous to eukaryotic DNA polymerase eta; Xeroderma pigmentosum complementation group Variant (XPV); Rad30; Chlamydomonas has at least two homologues of Rad30; null-allele mutant was isolated (PMID 29743196)
chr12	4792775	4795343	4792917	4794789	+	SPC25	Cre12.g524200.t1.2		4792775,4793131,4793357,4794201,4794644	4793058,4793201,4793519,4794289,4795343	25 kDa subunit of the ER signal peptidase; involved in processing signal peptides from ER-targeted proteins
chr12	4795379	4797824	4795547	4797744	-	Cre12.g524250.t1.2	Cre12.g524250.t1.2		4797647,4797152,4795379	4797824,4797529,4796953	
chr12	4797936	4801456	4797983	4800716	+	CGL71	Cre12.g524300.t1.2		4797936,4798222,4798887,4799251,4799715,4800123,4800607	4798134,4798475,4798967,4799325,4799779,4800164,4801456	Conserved in the Green Lineage
chr12	4801459	4804164	4801481	4804108	-	HUS1	Cre12.g524350.t1.1		4804056,4803823,4803591,4803129,4802735,4802356,4802070,4801806,4801549,4801459	4804164,4803947,4803656,4803272,4802878,4802412,4802179,4801866,4801621,4801498	Forms a sliding clamp complex with Rad9 and Rad1 that mediates repair at sites of DNA damage.
chr12	4804265	4808026	4804488	4807159	+	Cre12.g524400.t1.2	Cre12.g524400.t1.2		4804265,4804688,4805643,4806152,4807022	4804488,4805437,4805846,4806236,4808026	
chr12	4808029	4810534	4808046	4810302	-	PTP3	Cre12.g524450.t1.1		4809921,4809681,4809060,4808751,4808496,4808029	4810534,4809858,4809160,4808896,4808623,4808303	Protein Tyrosine Phosphatase Homolog 3, hypothetical; dephosphorylates phosphotyrosine residues
chr12	4811045	4816324	4811475	4816145	-	Cre12.g524500.t1.2	Cre12.g524500.t1.2		4815995,4815158,4814678,4814186,4813678,4813392,4813048,4812563,4812191,4811045	4816324,4815334,4814840,4814384,4813750,4813469,4813170,4812597,4812308,4811748	SET domain-containing methyltransferase; Similar to At1g143 F7A19.12, F16A14.25; putative ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [EC:2.1.1.127].  ChromoDB SDG3412
chr12	4816425	4818866	4816449	4818837	+	Cre12.g524550.t1.1	Cre12.g524550.t1.1		4816425,4817050,4817245,4817558,4817842,4818287,4818451,4818726	4816608,4817128,4817342,4817612,4818002,4818373,4818510,4818866	
chr12	4818869	4823564	4819873	4823285	-	Cre12.g524600.t1.2	Cre12.g524600.t1.2		4823483,4823047,4822542,4822209,4822026,4821778,4821491,4820666,4818869	4823564,4823330,4822631,4822327,4822061,4821788,4821572,4821076,4820344	
chr12	4823675	4828096	4823793	4827915	+	HDA18	Cre12.g524650.t1.2		4823675,4824067,4824464,4824897,4825446,4825779,4826053,4826721,4826987,4827327,4827840	4823855,4824296,4824583,4824964,4825540,4825956,4826261,4826758,4827197,4827489,4828096	ChromDB SRT3401; Homologous to yeast SIR2 protein, an NADH dependent histone deacetylase (SIR2 family)
chr12	4823675	4828096	4823793	4827915	+	HDA18	Cre12.g524650.t2.1		4823675,4824067,4824464,4824897,4825446,4825779,4826053,4827327,4827840	4823855,4824296,4824583,4824964,4825540,4825956,4826261,4827489,4828096	ChromDB SRT3401; Homologous to yeast SIR2 protein, an NADH dependent histone deacetylase (SIR2 family)
chr12	4828143	4831313	4828425	4830176	+	HAD4	Cre12.g524700.t1.2		4828143,4828880,4829138,4829334,4829688	4828552,4828977,4829169,4829431,4831313	
chr12	4831971	4833982	4832100	4832997	+	Cre12.g524750.t1.2	Cre12.g524750.t1.2		4831971,4832997	4832855,4833982	
chr12	4834061	4835152	4834399	4835021	+	Cre12.g524800.t1.1	Cre12.g524800.t1.1		4834061,4834745	4834510,4835152	
chr12	4836371	4844192	4838482	4843710	+	Cre12.g524850.t1.1	Cre12.g524850.t1.1		4836371,4838076,4838465,4839113,4841243,4842048	4837097,4838160,4838959,4841109,4841807,4844192	
chr12	4838081	4844192	4838482	4843710	+	Cre12.g524850.t4.1	Cre12.g524850.t4.1		4838081,4838465,4839113,4841243,4842048	4838160,4838959,4841109,4841807,4844192	
chr12	4836371	4844192	4838482	4843710	+	Cre12.g524850.t2.1	Cre12.g524850.t2.1		4836371,4838076,4838284,4839113,4841243,4842048	4837097,4838160,4838959,4841109,4841807,4844192	
chr12	4836371	4843595	4838482	4843595	+	Cre12.g524850.t3.1	Cre12.g524850.t3.1		4836371,4836673,4838076,4838465,4839113,4841243,4842048	4836498,4837097,4838160,4838959,4841109,4841807,4843595	
chr12	4844195	4845766	4844272	4845702	-	Cre12.g524900.t1.1	Cre12.g524900.t1.1		4845330,4845027,4844863,4844552,4844195	4845766,4845146,4844938,4844645,4844390	
chr12	4845861	4849219	4845919	4848792	+	Cre12.g524950.t1.1	Cre12.g524950.t1.1		4845861,4847316,4847764,4848108,4848558	4847056,4847454,4847843,4848275,4849219	
chr12	4849281	4852452	4849355	4852386	+	Cre12.g525000.t1.2	Cre12.g525000.t1.2		4849281,4849698,4850125,4850576,4851013,4851379,4851801,4852047	4849582,4850004,4850422,4850924,4851134,4851636,4851901,4852452	
chr12	4852476	4861360	4853040	4861244	-	SMC6A	Cre12.g525050.t1.1		4861087,4860837,4860613,4860150,4859829,4859444,4859013,4858755,4858344,4857915,4857611,4857303,4857078,4856859,4856562,4856155,4855817,4855508,4855123,4854741,4854402,4854107,4853673,4853282,4852476	4861360,4860953,4860717,4860439,4859956,4859644,4859212,4858828,4858480,4858104,4857772,4857389,4857145,4856937,4856728,4856418,4855978,4855700,4855296,4854983,4854563,4854217,4853946,4853478,4853139	Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation.
chr12	4861542	4872502	4861710	4872170	+	SMC6B	Cre12.g525100.t1.2		4861542,4861999,4862329,4862752,4863146,4863565,4863993,4864290,4864581,4864952,4865309,4865761,4866186,4866442,4866772,4867069,4867452,4867730,4868145,4868528,4868813,4869172,4869553,4869972,4870303,4870608,4871052,4871439,4871816,4872050	4861810,4862105,4862592,4862964,4863417,4863792,4864116,4864377,4864687,4865058,4865495,4865904,4866281,4866546,4866899,4867242,4867553,4867853,4868228,4868649,4869005,4869362,4869772,4870112,4870395,4870724,4871208,4871542,4871902,4872502	Structural maintenance of chromosomes-like protein similar to Rad18.
chr12	4872515	4876650	4873345	4876541	-	Cre12.g525150.t1.2	Cre12.g525150.t1.2		4875092,4874712,4874217,4873843,4872515	4876650,4874819,4874354,4873923,4873582	
chr12	4876799	4882482	4876957	4881647	+	NOP56	Cre12.g525200.t1.2		4876799,4877059,4877247,4877508,4878150,4879005,4879825,4880201,4880476,4881476,4881647	4876960,4877162,4877394,4877768,4878368,4879285,4880014,4880344,4881409,4881538,4882482	Structural Component of C/D snoRNPs. Required for pre-Ribosomal RNA processing and snoRNA guided pre-rRNA methylation
chr12	4882485	4891610	4883724	4891493	-	Cre12.g525300.t1.1	Cre12.g525300.t1.1		4891278,4890440,4890124,4889814,4888924,4888693,4887560,4886194,4885972,4885730,4884753,4884559,4884354,4884001,4882485	4891610,4890485,4890180,4889842,4889473,4888743,4888282,4887402,4886071,4885738,4885528,4884600,4884374,4884168,4883844	
chr12	4893171	4897140	4893417	4896246	+	Cre12.g525350.t1.1	Cre12.g525350.t1.1		4893171,4893610	4893475,4897140	
chr12	4897571	4905567	4898061	4903562	+	PTK15	Cre12.g525400.t1.1		4897571,4898044,4898390,4898689,4899250,4899567,4899867,4900494,4901497,4901842,4902259,4902809,4903091,4903514	4897932,4898100,4898418,4899009,4899355,4899725,4900334,4901348,4901673,4902045,4902639,4902871,4903258,4905567	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr12	4905606	4916770	4905957	4916689	-	Cre12.g525450.t1.1	Cre12.g525450.t1.1		4916597,4916103,4915731,4915427,4915043,4914498,4913865,4912556,4910907,4910129,4909778,4906979,4905606	4916770,4916348,4915775,4915499,4915131,4914686,4914240,4913020,4912329,4910645,4909922,4909527,4906867	null-allele mutant was isolated (PMID 29743196)
chr12	4916835	4925700	4917360	4925107	-	GCP2	Cre12.g525500.t1.1		4925488,4925326,4924501,4924058,4923585,4923195,4922936,4922735,4922316,4921851,4921577,4921287,4920788,4920462,4920044,4919660,4919244,4918947,4918442,4917883,4916835	4925700,4925402,4925215,4924351,4923681,4923375,4922992,4922789,4922463,4922029,4921668,4921420,4921065,4920561,4920207,4919833,4919370,4919046,4918703,4917981,4917624	Gamma tubulin ring complex protein 2; SPC97/DGRIP84 Identified by similarity to other homologs; ts-lethal mutation blocks at S/M (PMID 29743196)
chr12	4925749	4928932	4925991	4928838	-	MPA10	Cre12.g525550.t1.2		4928387,4928068,4927805,4927482,4927284,4926775,4926384,4925749	4928932,4928190,4927819,4927548,4927335,4926933,4926434,4926150	
chr12	4929971	4944942	4930075	4944326	+	Cre12.g525600.t1.1	Cre12.g525600.t1.1		4929971,4930522,4932513,4932807,4933259,4933724,4934301,4934763,4935459,4940614,4941091,4941540,4942280,4943243,4943579	4930139,4932134,4932628,4932933,4933465,4934032,4934440,4935072,4940366,4940839,4941243,4942123,4943035,4943350,4944942	
chr12	4944956	4948380	4945524	4948293	-	SUFS1	Cre12.g525650.t1.2		4948224,4947381,4946480,4945912,4944956	4948380,4947803,4947055,4946083,4945697	Cysteine desulfurase involved in iron-sulfur cluster biogenesis under oxidative stress and Fe limitation; likely localized to plastid, SufS/NifS homology; Related to iscS; involved in thiamine and molybdopterin biosynthesis; related to cyanobacterial type cysteine desulfurase or selenocysteine lyase
chr12	4948481	4951635	4948655	4950591	+	HCS1	Cre12.g525700.t1.2		4948481,4949205,4949527,4950113,4950405	4949028,4949276,4949635,4950251,4951635	holocytochrome c synthase, also named CCHL [yeast, PMID: 14514677]
chr12	4951884	4954940	4952537	4954705	-	Cre12.g525750.t1.2	Cre12.g525750.t1.2		4954498,4953867,4953322,4951884	4954940,4954220,4953657,4953146	null-allele mutant was isolated (PMID 29743196)
chr12	4955041	4959082	4955288	4958910	+	Cre12.g525776.t1.1	Cre12.g525776.t1.1		4955041,4955755,4956100,4956452,4956673,4957048,4957378,4957919,4958487,4958910	4955307,4955798,4956169,4956560,4956820,4957143,4957704,4958185,4958734,4959082	
chr12	4959131	4960288	4959201	4959523	+	Cre12.g525802.t1.1	Cre12.g525802.t1.1		4959131	4960288	
chr12	4960295	4963980	4961434	4962812	-	Cre12.g525827.t1.1	Cre12.g525827.t1.1		4963944,4962652,4962223,4960295	4963980,4962926,4962326,4961491	
chr12	4963911	4966772	4964655	4966598	+	Cre12.g525850.t1.2	Cre12.g525850.t1.2		4963911,4964504,4966283	4964117,4964808,4966772	
chr12	4964081	4969002	4964655	4968894	+	Cre12.g525850.t2.1	Cre12.g525850.t2.1		4964081,4964504,4966283,4968870	4964217,4964808,4966573,4969002	
chr12	4969004	4970880	4969473	4970314	-	Cre12.g525900.t1.2	Cre12.g525900.t1.2		4970609,4970232,4969004	4970880,4970315,4969709	
chr12	4970981	4974342	4971211	4973615	+	Cre12.g525950.t1.2	Cre12.g525950.t1.2		4970981,4971682,4972491,4973006	4971418,4971990,4972826,4974342	
chr12	4974351	4978670	4975182	4977808	-	Cre12.g525970.t1.1	Cre12.g525970.t1.1		4978228,4977787,4977312,4976677,4976334,4975610,4974351	4978670,4978021,4977578,4977012,4976501,4975714,4975404	
chr12	4978771	4982262	4978899	4981424	+	HCS5	Cre12.g525990.t1.1		4978771,4979042,4979760,4980217,4980594,4981424	4978911,4979134,4979896,4980371,4981137,4982262	
chr12	5009490	5010545	5010275	5010456	-	Cre12.g526000.t1.1	Cre12.g526000.t1.1		5009490	5010545	
chr12	4982264	4985270	4982642	4984936	-	Cre12.g526010.t1.1	Cre12.g526010.t1.1		4984612,4984357,4983420,4982264	4985270,4984470,4983698,4982993	
chr12	4985318	4989370	4985991	4989264	-	Cre12.g526030.t1.1	Cre12.g526030.t1.1		4989188,4988990,4988509,4988228,4987645,4986478,4985318	4989370,4989033,4988688,4988340,4987740,4986503,4986059	
chr12	4989471	4992452	4990073	4991725	+	Cre12.g526051.t1.1	Cre12.g526051.t1.1		4989471,4990559,4990799,4991116	4990280,4990633,4990936,4992452	
chr12	5011070	5013945	5011405	5012893	-	Cre12.g526068.t1.1	Cre12.g526068.t1.1		5013313,5012872,5012391,5011755,5011070	5013945,5013082,5012657,5012090,5011579	
chr12	5011070	5013945	5011405	5012893	-	Cre12.g526068.t2.1	Cre12.g526068.t2.1		5013313,5012872,5012391,5011755,5011070	5013945,5013106,5012657,5012090,5011579	
chr12	4992454	4993960	4993294	4993725	-	Cre12.g526071.t1.1	Cre12.g526071.t1.1		4993707,4992454	4993960,4993501	
chr12	4994015	4996310	4994156	4995270	-	Cre12.g526091.t1.1	Cre12.g526091.t1.1		4995661,4995220,4994963,4994015	4996310,4995454,4995012,4994245	
chr12	4996365	5001480	4996456	5001265	-	Cre12.g526111.t1.1	Cre12.g526111.t1.1		5000941,5000677,4999740,4996365	5001480,5000799,5000018,4996594	
chr12	5001647	5006095	5002461	5004805	-	Cre12.g526131.t1.1	Cre12.g526131.t1.1		5005941,5004698,5004438,5004115,5002948,5001647	5006095,5004810,5004585,5004210,5003002,5002529	
chr12	5006326	5009487	5006543	5008716	+	Cre12.g526150.t1.2	Cre12.g526150.t1.2		5006326,5007029,5007592,5008107	5006750,5007382,5007927,5009487	Serine/Threonine protein kinase.  Previously annotated as STPK17
chr12	5031010	5033995	5031897	5033414	-	Cre12.g526200.t1.1	Cre12.g526200.t1.1		5033805,5033364,5032883,5032247,5031010	5033995,5033598,5033156,5032582,5032110	
chr12	5031010	5034435	5031897	5033385	-	Cre12.g526200.t2.1	Cre12.g526200.t2.1		5033805,5033364,5032883,5032247,5031010	5034435,5033598,5033149,5032582,5032110	
chr12	5015006	5017352	5016464	5016718	+	Cre12.g526201.t1.2	Cre12.g526201.t1.2		5015006,5015322,5015699,5016386,5016529	5015029,5015476,5016242,5016470,5017352	
chr12	5031066	5032187	5031178	5031810	+	Cre12.g526210.t1.1	Cre12.g526210.t1.1		5031066,5031612	5031268,5032187	
chr12	5034146	5037374	5034469	5037205	+	Cre12.g526220.t1.1	Cre12.g526220.t1.1		5034146,5035341,5035809,5036186,5036673,5037016	5034481,5035516,5035963,5036217,5036729,5037374	
chr12	5038530	5041135	5038586	5040896	-	Cre12.g526230.t1.1	Cre12.g526230.t1.1		5040572,5040308,5039367,5038530	5041135,5040430,5039645,5038940	
chr12	5041519	5042396	5041927	5042358	-	Cre12.g526240.t1.1	Cre12.g526240.t1.1		5042340,5041519	5042396,5042134	
chr12	5042816	5044020	5042841	5043457	+	Cre12.g526250.t1.2	Cre12.g526250.t1.2		5042816	5044020	
chr12	5017371	5020275	5017747	5020059	-	Cre12.g526264.t1.1	Cre12.g526264.t1.1		5019744,5019471,5018534,5017371	5020275,5019593,5018812,5018101	
chr12	5044192	5048565	5044741	5047576	-	Cre12.g526295.t1.1	Cre12.g526295.t1.1		5047996,5047555,5047080,5046445,5045942,5044192	5048565,5047789,5047346,5046780,5046269,5044755	
chr12	5020441	5023865	5021098	5023833	-	Cre12.g526326.t1.1	Cre12.g526326.t1.1		5023636,5023355,5022772,5021948,5020441	5023865,5023498,5022960,5022017,5021305	
chr12	5050966	5051881	5050993	5051247	+	Cre12.g526339.t1.1	Cre12.g526339.t1.1		5050966,5051058	5050999,5051881	
chr12	5051900	5062545	5052276	5062318	-	Cre12.g526383.t1.1	Cre12.g526383.t1.1		5061994,5061763,5061401,5053109,5051900	5062545,5061852,5061547,5053387,5052630	
chr12	5023940	5026105	5025608	5025915	-	Cre12.g526388.t1.1	Cre12.g526388.t1.1		5025886,5025684,5023940	5026105,5025814,5025613	
chr12	5062696	5064785	5064426	5064739	-	Cre12.g526427.t1.1	Cre12.g526427.t1.1		5062696	5064785	
chr12	5026206	5028687	5026286	5028459	+	Cre12.g526450.t1.2	Cre12.g526450.t1.2		5026206,5026772,5027335,5027850	5026493,5027125,5027670,5028687	
chr12	5066646	5068107	5066907	5068016	+	Cre12.g526471.t1.1	Cre12.g526471.t1.1		5066646,5067099,5067662	5066925,5067452,5068107	
chr12	5028700	5030945	5030022	5030453	-	Cre12.g526500.t1.1	Cre12.g526500.t1.1		5030435,5028700	5030945,5030229	
chr12	5071500	5073905	5071693	5072850	-	Cre12.g526515.t1.1	Cre12.g526515.t1.1		5073270,5072829,5072348,5071500	5073905,5073063,5072614,5072047	
chr12	5077431	5080035	5078369	5079980	-	Cre12.g526559.t1.1	Cre12.g526559.t1.1		5079707,5079202,5078726,5077431	5080035,5079405,5078982,5078667	
chr12	5080470	5081845	5080501	5081810	-	Cre12.g526603.t1.1	Cre12.g526603.t1.1		5081613,5081332,5080749,5080470	5081845,5081475,5080937,5080514	
chr12	5082966	5085817	5083187	5085360	+	Cre12.g526650.t1.2	Cre12.g526650.t1.2		5082966,5083673,5084236,5084751	5083394,5084026,5084571,5085817	
chr12	5085893	5090495	5087311	5090310	-	RBL9	Cre12.g526700.t1.1		5089924,5089383,5089082,5088688,5088271,5087978,5085893	5090495,5089530,5089162,5088836,5088385,5088024,5087711	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted
chr12	5090550	5096905	5091590	5096616	-	Cre12.g526701.t1.2	Cre12.g526701.t1.2		5096460,5095843,5095549,5095294,5094884,5094498,5094104,5093730,5093362,5093110,5092174,5090550	5096905,5095999,5095605,5095359,5095068,5094634,5094311,5093872,5093532,5093177,5092920,5091730	
chr12	5097046	5098429	5097130	5097960	+	RBM8A	Cre12.g526750.t1.2		5097046,5097921	5097526,5098429	also known as Y14; forms with MAGOH a stable heretodimer which interacts with RNA-bound EIF4A3; predominantly nuclear though present in cytoplasm; the EJC remains associated with spliced mRNAs until the first round of translation
chr12	5098462	5102755	5099138	5102650	-	GND1	Cre12.g526800.t1.2		5102438,5102292,5102112,5101981,5101806,5101453,5101193,5100909,5100659,5100209,5099679,5098462	5102755,5102355,5102211,5102047,5101913,5101550,5101269,5101016,5100733,5100326,5099983,5099507	6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44); GI:18644674; probably plastidic based on N-terminal extension & similarity to GI:13936693
chr12	5103186	5107994	5103446	5107679	+	HEL56	Cre12.g526850.t1.2		5103186,5103988,5104235,5104752,5105389,5105905,5106578,5107207	5103707,5104038,5104316,5104891,5105631,5106391,5106983,5107994	
chr12	5108000	5115115	5108501	5115031	-	Cre12.g526883.t1.1	Cre12.g526883.t1.1		5114654,5114327,5113980,5113652,5113223,5112503,5110140,5109732,5109486,5108000	5115115,5114517,5114149,5113764,5113489,5113023,5112060,5109964,5109576,5109198	
chr12	5108000	5111015	5108501	5110911	-	Cre12.g526883.t2.1	Cre12.g526883.t2.1		5110797,5110140,5109732,5109486,5108000	5111015,5110573,5109964,5109576,5109198	
chr12	5115256	5121477	5115466	5121063	+	Cre12.g526950.t1.1	Cre12.g526950.t1.1		5115256,5116021,5116996,5117432,5117948,5118429,5118735,5119047,5119493,5120091,5120507	5115519,5116237,5117093,5117705,5118142,5118537,5118853,5119218,5119861,5120295,5121477	Transcription initiation factor TFIID, subunit TAF5, ChromDB TAFV341; contains WD4 domain. Putative homolog of Saccharomyces cerevisiae TAF5 which is the 9 kDa subunit of TFIID and SAGA complexes. Yeast TAF5 is involved in RNA polymerase II transcripti
chr12	5121746	5126621	5122115	5125725	+	Cre12.g527000.t1.2	Cre12.g527000.t1.2		5121746,5122898,5123223,5123582,5124536,5124939	5122633,5123021,5123436,5124329,5124758,5126621	
chr12	5127006	5131797	5127166	5130766	+	Cre12.g527050.t1.2	Cre12.g527050.t1.2		5127006,5127342,5127680,5128067,5128354,5128657,5129024,5129221,5129442,5129878,5130250,5130652	5127277,5127405,5127870,5128162,5128447,5128769,5129095,5129293,5129655,5130079,5130366,5131797	
chr12	5132146	5150127	5132509	5148845	+	Cre12.g527100.t1.1	Cre12.g527100.t1.1		5132146,5133295,5133704,5135177,5135607,5136154,5136504,5136809,5137276,5137753,5138272,5138710,5140397,5141043,5141611,5143147,5143633,5144106,5144615,5147295,5147666,5148137	5132877,5133493,5134844,5135338,5135916,5136264,5136702,5137047,5137498,5138053,5138519,5140221,5140737,5141375,5142369,5143378,5143791,5144358,5147119,5147485,5147860,5150127	
chr12	5132146	5150127	5132509	5148845	+	Cre12.g527100.t2.1	Cre12.g527100.t2.1		5132146,5133295,5133704,5135177,5135607,5136154,5136504,5136809,5137276,5137753,5138272,5138710,5140403,5141043,5141611,5143147,5143633,5144106,5144615,5147295,5147666,5148137	5132877,5133493,5134844,5135338,5135916,5136264,5136702,5137047,5137498,5138053,5138519,5140221,5140737,5141375,5142369,5143378,5143791,5144358,5147119,5147485,5147860,5150127	
chr12	5150248	5153515	5151096	5153129	-	Cre12.g527150.t1.1	Cre12.g527150.t1.1		5152855,5152517,5152168,5151857,5151428,5150248	5153515,5152642,5152305,5151942,5151544,5151204	
chr12	5153640	5156735	5155070	5156718	-	Cre12.g527200.t1.2	Cre12.g527200.t1.2		5156598,5156146,5155902,5155675,5155451,5153640	5156735,5156330,5155982,5155798,5155500,5155239	
chr12	5156789	5159758	5157981	5159636	-	Cre12.g527250.t1.2	Cre12.g527250.t1.2		5159525,5159192,5158892,5158539,5158362,5156789	5159758,5159370,5158972,5158662,5158411,5158132	
chr12	5159810	5163815	5160625	5163585	-	RFC5	Cre12.g527300.t1.2		5163407,5163015,5162606,5162230,5162025,5161671,5161292,5161055,5159810	5163815,5163228,5162679,5162326,5162087,5161752,5161421,5161118,5160794	Homologous to eukaryotic RFC5 (DNA replication factor C complex subunit 5); accessory protein of DNA polymerase
chr12	5163926	5165847	5164035	5165284	+	Cre12.g527350.t1.2	Cre12.g527350.t1.2		5163926,5164391,5164627,5165131	5164169,5164445,5164986,5165847	
chr12	5165896	5169557	5165977	5169316	+	PGM9	Cre12.g527400.t1.1		5165896,5166313,5166689,5167096,5167505,5167815,5168272,5168670,5169052	5166101,5166409,5166867,5167268,5167718,5168125,5168460,5168771,5169557	
chr12	5169560	5172352	5170171	5172215	-	CAM17	Cre12.g527450.t1.2		5172179,5171953,5171642,5171342,5171096,5170883,5170679,5170435,5169560	5172352,5172008,5171690,5171431,5171230,5170927,5170726,5170509,5170234	
chr12	5172476	5176557	5172641	5175913	+	Cre12.g527500.t1.2	Cre12.g527500.t1.2		5172476,5172794,5173181,5174335,5174587,5174881,5175177,5175490	5172708,5172942,5173917,5174428,5174710,5175039,5175373,5176557	
chr12	5176560	5177965	5176977	5177797	-	Cre12.g527550.t1.2	Cre12.g527550.t1.2		5177674,5177354,5176560	5177965,5177481,5177101	
chr12	5178066	5181716	5178109	5181289	+	Cre12.g527600.t1.1	Cre12.g527600.t1.1		5178066,5178465,5178783,5179202,5179963,5180360,5180612,5181127	5178321,5178528,5178987,5179753,5180064,5180457,5180866,5181716	
chr12	5181934	5183913	5182190	5183699	-	Cre12.g527650.t1.1	Cre12.g527650.t1.1		5183462,5183146,5182630,5181934	5183913,5183239,5182939,5182422	
chr12	5184076	5196762	5184529	5195663	+	CYG19	Cre12.g527700.t1.1		5184076,5184368,5185030,5188469,5192744,5193050,5194893,5195068,5195288	5184257,5184898,5188326,5192659,5192921,5194735,5194918,5195154,5196762	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens; null-allele passenger mutation was isolated (PMID 29743196)
chr12	5197148	5198565	5197838	5198424	-	DLT2	Cre12.g527750.t1.2		5198179,5197148	5198565,5198004	LC2 component of outer arm dynein; Tctex2 homolog; the oda12 mutant is discussed in relation to LC1 by Tanner et al. 28 [PMID: 18579685]
chr12	5199162	5201782	5200852	5201527	-	DLL3	Cre12.g527800.t1.1		5201476,5201273,5201021,5199162	5201782,5201383,5201107,5200915	LC10 component of outer arm dynein, also known as DNAL4 in other organisms; LC8 homolog.
chr12	5201883	5205485	5201928	5205060	+	Cre12.g527850.t1.1	Cre12.g527850.t1.1		5201883,5202186,5202459,5202721,5203579,5203767,5203950,5204232,5204495,5204767,5205012	5201976,5202308,5202520,5202794,5203662,5203849,5204035,5204349,5204578,5204832,5205485	RNA and ssDNA-binding protein of unknown function, necessary for stabilization of the Trax protein [PMID: 17028328]
chr12	5206433	5210074	5206500	5209525	+	Cre12.g527918.t1.2	Cre12.g527918.t1.2		5206433,5207751,5207986,5208309,5208678,5209005,5209279	5206684,5207774,5208188,5208386,5208877,5209125,5210074	
chr12	5210917	5214712	5211630	5214355	-	Cre12.g527950.t1.1	Cre12.g527950.t1.1		5214169,5213891,5213549,5213295,5212887,5212666,5212353,5210917	5214712,5214030,5213663,5213422,5213200,5212741,5212540,5211950	belongs to glycosyl transferase family
chr12	5215068	5218816	5215740	5218789	-	FAP303	Cre12.g528000.t1.2		5218654,5218017,5217697,5217451,5217109,5216802,5216236,5215068	5218816,5218119,5217813,5217533,5217192,5216945,5216487,5216052	Similar 5'-AMP-activated protein kinase gamma subunit
chr12	5218943	5222974	5219307	5221747	+	Cre12.g528050.t1.2	Cre12.g528050.t1.2		5218943,5220172,5220508,5220780,5221178,5221551	5219482,5220293,5220591,5220890,5221362,5222974	
chr12	5223183	5228624	5223320	5228423	+	Cre12.g528100.t1.1	Cre12.g528100.t1.1		5223183,5223658,5224119,5224367,5225353,5225539,5225796,5226019,5226199,5226468,5226817,5227679	5223434,5223848,5224211,5225228,5225436,5225644,5225914,5226089,5226355,5226717,5227526,5228624	
chr12	5228630	5230522	5228731	5230213	-	OST3	Cre12.g528150.t1.2		5230195,5229978,5229500,5229204,5228911,5228630	5230522,5230113,5229592,5229279,5229073,5228731	Oligosaccharyltransferase complex, subunit DC2.  OST3/OST6 family.  Part of a complex of an ER transmembrane proteins that transfers core oligosaccharide from dolichol carrier to Asn-X-Ser/Thr motifs
chr12	5230623	5240614	5230648	5239885	+	Cre12.g528200.t1.1	Cre12.g528200.t1.1		5230623,5230733,5230876,5230989,5231138,5231306,5231671,5232179,5232493,5234384,5234756,5235113,5235611,5236235,5236943,5237517,5238276,5238661,5239063	5230657,5230801,5230903,5231065,5231218,5231580,5232084,5232383,5234205,5234558,5234925,5235439,5236033,5236762,5237368,5238140,5238527,5238903,5240614	
chr12	5240626	5249772	5241459	5249644	-	FAP379	Cre12.g528250.t1.1		5249529,5249100,5248854,5248655,5247514,5246595,5246307,5245943,5245320,5244987,5244632,5244195,5243943,5243672,5243062,5242713,5242198,5240626	5249772,5249173,5248959,5248755,5248474,5247289,5246454,5246118,5245834,5245170,5244837,5244474,5244062,5243780,5243087,5242895,5242524,5242002	null-allele mutant was isolated (PMID 29743196; Found in Cr and Volvox but not strongly conserved elsewhere
chr12	5249995	5253352	5250696	5252892	-	Cre12.g528300.t1.1	Cre12.g528300.t1.1		5253079,5252670,5252413,5252096,5251870,5251581,5251311,5250902,5249995	5253352,5252909,5252592,5252257,5251946,5251694,5251449,5251125,5250736	
chr12	5253463	5256755	5253868	5256189	+	Cre12.g528350.t1.2	Cre12.g528350.t1.2		5253463,5253865,5254243,5254537,5254916,5255390	5253651,5254126,5254397,5254807,5255247,5256755	
chr12	5257179	5261648	5257298	5261203	+	Cre12.g528400.t1.1	Cre12.g528400.t1.1		5257179,5257525,5257719,5258006,5258409,5258774,5259071,5260399	5257424,5257607,5257854,5258255,5258645,5258913,5260198,5261648	
chr12	5261748	5265152	5262282	5264851	-	ASO1	Cre12.g528450.t1.2		5264393,5263868,5262903,5261748	5265152,5264185,5263730,5262688	Putative L-aspartate oxidase (EC 1.4.3.16); similarity to rice L-aspartate oxidase (GenBank XP_464033); Target-P predicts organelle targeting sequence
chr12	5265207	5268792	5266824	5268611	-	Cre12.g528500.t1.2	Cre12.g528500.t1.2		5268497,5268259,5268031,5267829,5267503,5267036,5265207	5268792,5268322,5268098,5267874,5267553,5267150,5266924	
chr12	5268907	5271370	5269096	5271136	+	Cre12.g528550.t1.1	Cre12.g528550.t1.1		5268907,5269530,5270749	5269297,5269763,5271370	Similar to steroid 5-alpha-reductase
chr12	5271419	5272912	5272195	5272825	-	CSB47	Cre12.g528600.t1.1		5272666,5272434,5271419	5272912,5272547,5272318	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	5273187	5275962	5273640	5275858	-	Cre12.g528614.t1.2	Cre12.g528614.t1.2		5275753,5275256,5274466,5274243,5273986,5273187	5275962,5275342,5275057,5274298,5274091,5273813	
chr12	5276123	5278878	5276205	5277156	+	Cre12.g528650.t1.2	Cre12.g528650.t1.2		5276123,5276416	5276272,5278878	
chr12	5279858	5282592	5279924	5282161	+	TRPA1	Cre12.g528700.t1.2		5279858,5280192,5280679,5281101,5281771,5282101	5280064,5280309,5280883,5281348,5281890,5282592	
chr12	5283273	5285510	5283759	5285437	+	RPL12	Cre12.g528750.t1.2		5283273,5284291,5285401	5284044,5284470,5285510	Cytosolic 60S large ribosomal subunit protein L12
chr12	5285815	5288472	5286336	5288230	-	Cre12.g528800.t1.1	Cre12.g528800.t1.1		5288208,5287942,5287625,5287300,5286964,5286668,5285815	5288472,5288015,5287776,5287429,5287102,5286825,5286486	
chr12	5288553	5290501	5289076	5290393	-	DLX1	Cre12.g528850.t1.1		5290308,5290126,5289943,5289609,5288553	5290501,5290232,5290023,5289710,5289172	LC3 component of outer arm dynein; thioredoxin homolog; 16KD
chr12	5290593	5292993	5290695	5292183	+	RBG1	Cre12.g528900.t1.1		5290593,5290844,5291181,5291781,5292151	5290716,5290993,5291297,5292000,5292993	NIP7 (nuclear import 7) homolog
chr12	5293667	5294242	5293962	5294200	-	Cre12.g528926.t1.1	Cre12.g528926.t1.1		5293667	5294242	
chr12	5294414	5299408	5294570	5299308	-	PUF1	Cre12.g528950.t1.1		5299126,5298953,5298729,5298342,5297551,5296506,5295836,5294414	5299408,5299019,5298815,5298543,5297854,5296803,5296009,5295647	Puf protein: contains pumilio-family RNA binding domains (PUF). Puf protein family thought to repress gene expression by affecting mRNA translation or stability.
chr12	5299513	5303105	5299555	5301460	+	Cre12.g529000.t1.2	Cre12.g529000.t1.2		5299513,5300113,5300384,5300747,5300979,5301248,5301439	5299789,5300280,5300523,5300834,5301035,5301304,5303105	
chr12	5303282	5310536	5303413	5310194	+	Cre12.g529050.t1.2	Cre12.g529050.t1.2		5303282,5303551,5303874,5304223,5304433,5304682,5305059,5305322,5305511,5305838,5306244,5306759,5307095,5307426,5309056,5309846,5310194	5303470,5303732,5303976,5304315,5304516,5304927,5305215,5305380,5305694,5306091,5306610,5307006,5307299,5308894,5309629,5310034,5310536	
chr12	5310663	5312773	5310763	5311960	+	ATPVL2	Cre12.g529100.t1.2		5310663,5311128,5311295,5311797	5310966,5311205,5311468,5312773	Putative vacuolar proton-ATPase 16 kDa proteolipid; Vacuolar membrane ATPase,V0 sector, subunit c
chr12	5313183	5317134	5313437	5316605	+	FAP314	Cre12.g529150.t1.2		5313183,5313936,5314118,5314297,5314518,5314700,5314942,5315569,5315905,5316313,5316545	5313490,5314014,5314172,5314360,5314552,5314740,5315059,5315719,5316007,5316375,5317134	Protein phosphatase 2C homolog 1; serine/threonine protein phosphatase; found in the flagellar proteome [PMID: 15998802]; similar to protein phosphatase 2C epsilon
chr12	5317137	5318982	5317700	5318804	-	Cre12.g529200.t1.1	Cre12.g529200.t1.1		5318709,5318339,5317137	5318982,5318441,5318153	
chr12	5319067	5325762	5319668	5325695	-	Cre12.g529250.t1.1	Cre12.g529250.t1.1		5325665,5325408,5325132,5324365,5324082,5323788,5323429,5323139,5322765,5322349,5321935,5321599,5321371,5321153,5320858,5320435,5319993,5319067	5325762,5325578,5325219,5324903,5324162,5323952,5323652,5323279,5322938,5322481,5322084,5321776,5321390,5321248,5321009,5320700,5320280,5319865	
chr12	5325817	5332782	5326109	5332594	-	Cre12.g529301.t1.1	Cre12.g529301.t1.1		5332211,5331100,5330785,5330130,5329069,5327537,5325817	5332782,5332033,5330950,5330693,5329972,5328844,5327370	
chr12	5332903	5336734	5333003	5336257	+	Cre12.g529350.t1.1	Cre12.g529350.t1.1		5332903,5333322,5333673,5333937,5334311,5334559,5334862,5335612,5335828,5336173	5333103,5333499,5333757,5334023,5334382,5334731,5335483,5335668,5335941,5336734	null-allele mutant was isolated (PMID 29743196)
chr12	5336747	5337122	5336801	5337063	-	Cre12.g529376.t1.1	Cre12.g529376.t1.1		5336747	5337122	
chr12	5337169	5338626	5337478	5338595	-	RPS27E1	Cre12.g529400.t1.2		5338592,5338350,5338234,5338018,5337169	5338626,5338442,5338271,5338115,5337507	Cytosolic 40S small ribosomal subunit protein S27, isoform A
chr12	5339180	5344792	5340257	5344699	-	DRP5	Cre12.g529450.t1.2		5344430,5344172,5343969,5343743,5343494,5343273,5343089,5342838,5342515,5342093,5341850,5341539,5341211,5340867,5340517,5339180	5344792,5344201,5344080,5343866,5343611,5343404,5343182,5342966,5342660,5342372,5341976,5341742,5341449,5341077,5340744,5340367	Similar to Arabidopsis DRP5A
chr12	5339180	5344842	5340257	5344699	-	DRP5A	Cre12.g529450.t2.1		5344430,5343969,5343743,5343494,5343273,5343089,5342838,5342515,5342093,5341850,5341539,5341211,5340867,5340517,5339180	5344842,5344080,5343866,5343611,5343404,5343182,5342966,5342660,5342372,5341976,5341742,5341449,5341077,5340744,5340367	Similar to Arabidopsis DRP5A
chr12	5339180	5344842	5340257	5344699	-	DRP5	Cre12.g529450.t3.1		5344430,5344172,5343969,5343743,5343494,5343273,5343089,5342838,5342515,5342093,5341850,5341539,5341211,5341054,5340867,5340517,5339180	5344842,5344201,5344080,5343866,5343611,5343404,5343182,5342966,5342660,5342372,5341976,5341742,5341449,5341077,5340999,5340744,5340367	Similar to Arabidopsis DRP5A
chr12	5339180	5344842	5340257	5344699	-	DRP5	Cre12.g529450.t4.1		5344430,5344172,5343969,5343743,5343494,5343273,5343089,5342838,5342515,5342093,5341850,5341539,5341211,5340867,5340517,5339180	5344842,5344201,5344080,5343866,5343611,5343404,5343182,5342966,5342660,5342372,5341976,5341742,5341449,5340999,5340744,5340367	Similar to Arabidopsis DRP5A
chr12	5344943	5351729	5345053	5351147	+	Cre12.g529500.t1.2	Cre12.g529500.t1.2		5344943,5345322,5345636,5346006,5346235,5346527,5346989,5347346,5347684,5348131,5348470,5348902,5349227,5349805,5350272,5350602,5350931	5345118,5345419,5345868,5346085,5346409,5346703,5347129,5347444,5347923,5348241,5348586,5349058,5349480,5349990,5350417,5350755,5351729	in the RrmJ/FtsJ family involved in 5S ribosome biogenesis
chr12	5352264	5357077	5352358	5356445	+	ALK1	Cre12.g529550.t1.2		5352264,5352472,5352903,5353036,5353131,5353337,5353537,5353710,5353891,5354062,5354450,5354730,5355099	5352375,5352549,5352967,5353061,5353241,5353393,5353602,5353768,5353946,5354127,5354598,5354943,5357077	Aurora-Like Kinase; formerly known as CALK (Chlamydomonas Aurora-Like Kinase [gi:9716372; PMID: 11121779]. Serine/threonine protein kinase; regulates chromosome segregation and cytokinesis in mammals
chr12	5357080	5367815	5357529	5367558	-	RPA1	Cre12.g529600.t1.2		5367480,5367206,5366949,5366736,5366496,5366160,5365188,5364635,5364258,5362348,5361723,5360050,5358506,5357080	5367815,5367321,5367041,5366802,5366582,5366330,5365376,5365017,5364509,5364073,5362165,5361215,5358771,5358222	
chr12	5367916	5370676	5369050	5370474	+	RPL7A	Cre12.g529651.t1.1		5367916,5368112,5368280,5368956,5369398,5370234	5367994,5368159,5368337,5369218,5369571,5370676	Cytosolic 60S large ribosomal subunit protein L7a
chr12	5371116	5376919	5371465	5376312	+	FAP401	Cre12.g529700.t1.2		5371116,5371823,5372082,5372575,5373055,5373552,5373970,5374277,5374600,5375052	5371567,5371867,5372273,5372841,5373314,5373789,5374095,5374437,5374837,5376919	Found in Cr and Volvox but not strongly conserved elsewhere
chr12	5376966	5380117	5376978	5379746	+	Cre12.g529725.t1.1	Cre12.g529725.t1.1		5376966,5377252,5377584,5378332,5378811	5377072,5377455,5377970,5378538,5380117	
chr12	5380331	5381875	5380484	5381723	-	Cre12.g529751.t2.1	Cre12.g529751.t2.1		5381611,5380913,5380331	5381875,5381401,5380798	
chr12	5380140	5381875	5380484	5381723	-	Cre12.g529751.t1.1	Cre12.g529751.t1.1		5381611,5380913,5380140	5381875,5381401,5380798	
chr12	5382301	5385455	5383022	5385338	-	Cre12.g529800.t2.1	Cre12.g529800.t2.1		5384621,5384351,5383968,5383330,5382301	5385455,5384535,5384130,5383575,5383160	
chr12	5382090	5385445	5383022	5385338	-	Cre12.g529800.t1.1	Cre12.g529800.t1.1		5384621,5384351,5383968,5383330,5382090	5385445,5384535,5384130,5383575,5383160	
chr12	5385606	5396895	5385753	5395573	+	Cre12.g529850.t1.1	Cre12.g529850.t1.1		5385606,5386447,5386738,5386973,5387295,5387490,5387858,5388133,5388372,5388789,5389201,5389630,5390006,5390280,5390614,5390755,5390991,5391445,5391780,5391944,5392291,5392583,5392928,5393541,5393815,5394505,5395232,5395490	5386231,5386583,5386797,5387163,5387346,5387600,5387992,5388262,5388598,5388947,5389418,5389741,5390149,5390413,5390635,5390828,5391174,5391570,5391829,5391993,5392379,5392771,5393350,5393637,5394167,5395068,5395322,5396895	
chr12	5403178	5407697	5403208	5407081	+	EIF4G1	Cre12.g529950.t1.2		5403178,5403408,5403587,5403850,5404145,5404559,5404941,5405338,5406005,5406352,5406765	5403319,5403497,5403679,5403953,5404268,5404762,5405180,5405681,5406152,5406512,5407697	putative eukaryotic initiation factor 4, eIF4; May contain additional coding sequence in intronic N-island PMID: 27175017
chr12	5407700	5414615	5409192	5414482	-	Cre12.g530000.t1.2	Cre12.g530000.t1.2		5414389,5414189,5413885,5413700,5413397,5412935,5412739,5412036,5411832,5411522,5411306,5411007,5410199,5409613,5407700	5414615,5414281,5413974,5413751,5413473,5413014,5412769,5412558,5411932,5411683,5411355,5411164,5410853,5410058,5409446	
chr12	5414746	5423047	5414867	5422639	+	Cre12.g530050.t1.2	Cre12.g530050.t1.2		5414746,5415004,5415232,5417259,5417478,5417748,5418356,5418740,5419216,5419669,5419982,5420288,5420798,5421561,5421971	5414903,5415043,5417124,5417332,5417589,5418166,5418526,5418963,5419501,5419818,5420050,5420532,5421248,5421783,5423047	Expressed Protein. Conserved protein similar to inositol polyphosphate phosphatase class of proteins.  Contains WD4 repeat domains.  May be a phosphoinositide 5-phosphatase or inositol-polyphosphate 5-phosphatase
chr12	5423050	5425897	5423798	5425509	-	CGL83	Cre12.g530100.t1.2		5425489,5425171,5424913,5424615,5424083,5423050	5425897,5425339,5425005,5424729,5424189,5423855	
chr12	5426216	5427377	5426567	5426910	+	Cre12.g530150.t1.2	Cre12.g530150.t1.2		5426216	5427377	
chr12	5427886	5428997	5427947	5428456	+	Cre12.g530200.t1.2	Cre12.g530200.t1.2		5427886,5428318	5428151,5428997	
chr12	5429116	5435187	5429358	5434886	+	Cre12.g530250.t1.1	Cre12.g530250.t1.1		5429116,5429766,5430064,5430488,5430826,5431177,5431463,5433068	5429476,5429932,5430278,5430695,5430924,5431289,5432885,5435187	
chr12	5435196	5438045	5435522	5437704	-	FKB16-3	Cre12.g530300.t1.2		5437683,5437516,5437199,5436708,5436337,5435879,5435196	5438045,5437543,5437313,5436879,5436419,5436007,5435601	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); probably directed to thylakoid lumen (homology to AtFKBP16-3 and bipartite cTP with RR motif)
chr12	5438306	5442687	5438779	5441390	+	IRT2	Cre12.g530350.t1.1		5438306,5439069,5439487,5440418,5440625,5440951,5441244	5438872,5439241,5440216,5440436,5440768,5441073,5442687	related to bacterial zupT homologs; physically linked to IRT1; PMID: 15710683; PMID: 16766056
chr12	5444196	5447896	5444723	5447278	+	IRT1	Cre12.g530400.t1.2		5444196,5444722,5444977,5445330,5445840,5446135,5446386,5446560,5446895,5447122	5444563,5444830,5445066,5445654,5445896,5446221,5446404,5446703,5447013,5447896	related to bacterial zupT homologs; physically linked to IRT2; PMID: 15710683; PMID: 16766055
chr12	5448316	5451937	5448674	5451659	+	Cre12.g530450.t1.1	Cre12.g530450.t1.1		5448316,5448667,5450174,5450536	5448545,5450039,5450304,5451937	
chr12	5451940	5453855	5452529	5453739	-	Cre12.g530500.t1.2	Cre12.g530500.t1.2		5453620,5453399,5452985,5451940	5453855,5453498,5453142,5452725	
chr12	5453996	5458647	5454068	5458050	+	KDG2	Cre12.g530550.t1.1		5453996,5454363,5454662,5454919,5455165,5455616,5455995,5456479,5456710,5457239,5457715,5457966	5454185,5454419,5454795,5454949,5455344,5455783,5456219,5456510,5457065,5457570,5457777,5458647	similar to sphingosine kinase type 2 from Bos taurus XP_612394.2
chr12	5458758	5461595	5459465	5461451	-	GLN3	Cre12.g530600.t1.1		5461421,5461291,5460985,5460217,5458758	5461595,5461323,5461071,5460600,5460071	Glutamine synthetase (EC 6.3.1.2), plastid precursor (Glutamate-ammonia ligase); Arranged head-to-head with another glutamine synthetase gene, GLN2; GLN2 & GLN3 are very nearly identical at the predicted aa level, and also nearly identical in the coding sequence at the nucleotide level
chr12	5461696	5465279	5462438	5464603	+	GLN2	Cre12.g530650.t1.1		5461696,5462596,5462967,5463468,5463997	5462477,5462619,5463056,5463851,5465279	Glutamine synthetase (EC 6.3.1.2), chloroplast precursor (Glutamate--ammonia ligase) (GS2), CO2-responsive gene; identical to GLNA2_CHLRE cDNA [SwissProt Q42689), PMID: 8938407]; arranged head-to-head with another glutamine synthetase gene. GLN3; GLN2 & GLN3 are very nearly identical at the predicted aa level, and also nearly identical in the coding sequence at the nucleotide level
chr12	5461696	5465028	5462438	5464603	+	GLN2	Cre12.g530650.t2.1		5461696,5462596,5462967,5463468,5463997	5462477,5462619,5463056,5463851,5465028	Glutamine synthetase (EC 6.3.1.2), chloroplast precursor (Glutamate--ammonia ligase) (GS2), CO2-responsive gene; identical to GLNA2_CHLRE cDNA [SwissProt Q42689), PMID: 8938407]; arranged head-to-head with another glutamine synthetase gene. GLN3; GLN2 & GLN3 are very nearly identical at the predicted aa level, and also nearly identical in the coding sequence at the nucleotide level
chr12	5465030	5467115	5465626	5466839	-	Cre12.g530700.t1.2	Cre12.g530700.t1.2		5465030	5467115	
chr12	5467216	5471117	5468248	5471100	+	Cre12.g530750.t1.1	Cre12.g530750.t1.1		5467216,5467514,5467707,5467877,5468115,5468392,5468655,5468984,5469202,5469693,5470027,5470332,5470590	5467328,5467597,5467763,5467949,5468251,5468499,5468834,5469085,5469405,5469875,5470179,5470460,5471117	
chr12	5471120	5473605	5471479	5473422	-	Cre12.g530800.t1.1	Cre12.g530800.t1.1		5473386,5473029,5472666,5472254,5471987,5471120	5473605,5473296,5472830,5472384,5472043,5471740	
chr12	5473736	5481523	5473887	5480536	+	Cre12.g530850.t1.1	Cre12.g530850.t1.1		5473736,5474224,5474367,5474607,5474833,5475228,5476846,5477190,5477456,5478105,5478765,5479671,5480060,5480427	5474109,5474274,5474447,5474684,5475042,5476666,5477021,5477296,5477892,5478550,5479465,5479854,5480201,5481523	
chr12	5473736	5481523	5473887	5480536	+	Cre12.g530850.t2.1	Cre12.g530850.t2.1		5473736,5474224,5474367,5474607,5474833,5475228,5476846,5477190,5477456,5478105,5478768,5479671,5480060,5480427	5474109,5474274,5474447,5474684,5475042,5476666,5477021,5477296,5477892,5478550,5479465,5479854,5480201,5481523	
chr12	5473736	5481523	5474232	5480536	+	Cre12.g530850.t3.1	Cre12.g530850.t3.1		5473736,5474224,5474367,5474610,5474833,5475228,5476846,5477190,5477456,5478105,5478768,5479671,5480060,5480427	5474109,5474274,5474447,5474684,5475042,5476666,5477021,5477296,5477892,5478550,5479465,5479854,5480201,5481523	
chr12	5482180	5483826	5483547	5483719	-	Cre12.g530876.t1.1	Cre12.g530876.t1.1		5482180	5483826	
chr12	5483993	5490870	5484197	5489901	+	Cre12.g530900.t1.2	Cre12.g530900.t1.2		5483993,5484725,5485140,5485376,5485678,5486031,5486438,5486757,5487145,5487768,5488078,5488379,5488818,5489028,5489434,5489785	5484365,5484811,5485215,5485446,5485800,5486190,5486510,5486911,5487263,5487903,5488160,5488551,5488870,5489190,5489570,5490870	
chr12	5490900	5492545	5491898	5492337	-	Cre12.g530934.t1.2	Cre12.g530934.t1.2		5492067,5490900	5492545,5491898	
chr12	5495526	5498270	5495669	5497729	+	TGL18	Cre12.g530950.t1.1		5495526,5495937,5496136,5496490,5496811,5497039,5497283,5497551	5495835,5495983,5496261,5496639,5496886,5497083,5497382,5498270	
chr12	5498360	5503915	5500479	5503829	-	AMT8	Cre12.g531000.t1.2		5503758,5503504,5503081,5502649,5502102,5501668,5501268,5500939,5498360	5503915,5503525,5503235,5502920,5502219,5501943,5501424,5501125,5500667	belongs to AMT1 family (Amt1;8); corresponds to AY548754, mRNA complete cds (PMID: 15821986); null-allele mutant was isolated (PMID 29743196)
chr12	5498360	5504135	5500479	5503829	-	AMT8	Cre12.g531000.t2.1		5503758,5503504,5503081,5502649,5502102,5501668,5501268,5500939,5498360	5504135,5503525,5503235,5502920,5502219,5501943,5501424,5501125,5500667	belongs to AMT1 family (Amt1;8); corresponds to AY548754, mRNA complete cds (PMID: 15821986); null-allele mutant was isolated (PMID 29743196)
chr12	5503986	5510445	5504442	5510383	-	RAA3	Cre12.g531050.t1.1		5507089,5506772,5506577,5506207,5503986	5510445,5506951,5506651,5506398,5506053	a highly degenerated octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein carrying a C-terminal RAP domain; necessary for trans-splicing of psaA mRNA
chr12	5510556	5512741	5510611	5512250	+	PBA2	Cre12.g531100.t1.2		5510556,5510936,5511448,5512006	5510837,5511015,5511623,5512741	20S proteasome beta subunit A2 (beta 1), (PRE3) (PSMB6) (PSMB9), peptidylglutamyl hydrolyzing activity
chr12	5510556	5512626	5510611	5512250	+	PBA2	Cre12.g531100.t2.1		5510556,5510936,5511448,5512006	5510837,5511015,5511623,5512626	20S proteasome beta subunit A2 (beta 1), (PRE3) (PSMB6) (PSMB9), peptidylglutamyl hydrolyzing activity
chr12	5514699	5519540	5514919	5519205	+	Cre12.g531150.t1.1	Cre12.g531150.t1.1		5514699,5515336,5515704,5516176,5516849,5517801,5518199,5518513,5518952	5515139,5515522,5516032,5516680,5517632,5518065,5518340,5518764,5519540	
chr12	5519599	5529089	5519652	5528166	+	FOX2	Cre12.g531200.t1.1		5519599,5519813,5520014,5520325,5520675,5521050,5521517,5521858,5522040,5522341,5522608,5522941,5523442,5523842,5524131,5524401,5524654,5524922,5525286,5525670,5525870,5526168,5526524,5526864,5527162,5527479,5527819,5528059	5519746,5519918,5520194,5520462,5520837,5521294,5521675,5521932,5522136,5522394,5522713,5523244,5523606,5523968,5524231,5524481,5524719,5525087,5525475,5525762,5525951,5526360,5526702,5526947,5527281,5527631,5527891,5529089	multicopper ferroxidase-like protein
chr12	5529139	5532250	5529219	5531596	+	Cre12.g531250.t1.1	Cre12.g531250.t1.1		5529139,5529582,5529875,5530191,5530460,5530746,5530958,5531358	5529338,5529700,5530040,5530343,5530546,5530800,5531109,5532250	
chr12	5532253	5536868	5535176	5536662	-	Cre12.g531283.t1.1	Cre12.g531283.t1.1		5536487,5536022,5535488,5532253	5536868,5536054,5535759,5535215	
chr12	5532253	5536868	5535176	5536188	-	Cre12.g531283.t2.1	Cre12.g531283.t2.1		5536487,5536133,5536022,5535488,5532253	5536868,5536378,5536054,5535759,5535215	
chr12	5538019	5541710	5538277	5541440	+	CGL62	Cre12.g531350.t1.1		5538019,5538666,5538990,5539335,5539600,5539851,5539991,5540198,5540445,5540596,5540786,5541382	5538475,5538805,5539122,5539378,5539680,5539879,5540048,5540249,5540493,5540637,5541251,5541710	Conserved in the Green Lineage
chr12	5541713	5552358	5542078	5552162	-	NPHP4	Cre12.g531400.t1.1		5552127,5552003,5551454,5551188,5550790,5550289,5549801,5549426,5549039,5548722,5548497,5548081,5547700,5547466,5547155,5546860,5546578,5546154,5545779,5545498,5545153,5544810,5544463,5544149,5543950,5543566,5543223,5542849,5542535,5541713	5552358,5552042,5551854,5551326,5551023,5550577,5550138,5549611,5549307,5548896,5548583,5548339,5547887,5547547,5547252,5546991,5546728,5546452,5545967,5545651,5545359,5545021,5544684,5544313,5544024,5543816,5543427,5543064,5542710,5542364	Found in basal body proteome as POC10 [PMID: 15964273]. Mammalian homolog is NPHP-4, also known as nephroretinin, gene mutated in Senior-Loken syndrome.
chr12	5552511	5555598	5552972	5555329	-	HPAT3	Cre12.g531450.t1.2		5555212,5554978,5554800,5554364,5554014,5553817,5553378,5552511	5555598,5555065,5554896,5554466,5554219,5553866,5553699,5553219	
chr12	5555729	5560239	5555923	5559416	+	DRC3	Cre12.g531500.t1.2		5555729,5556073,5556421,5557006,5557402,5557779,5558093,5558493,5558850,5559173	5556001,5556258,5556577,5557208,5557536,5557883,5558287,5558639,5558975,5560239	Found in the flagellar proteome; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr12	5563679	5566482	5563729	5565981	+	EIF5B3	Cre12.g531550.t1.2		5563679,5563812,5563936,5564145,5564511,5565083,5565542,5565900	5563735,5563854,5564015,5564255,5564646,5565368,5565629,5566482	putative translation initiation factor eIF-2 beta chain; IF5 family member
chr12	5566529	5568923	5566735	5568591	+	Cre12.g531600.t1.2	Cre12.g531600.t1.2		5566529,5568444,5568591	5568278,5568511,5568923	IF5 family member
chr12	5568943	5570098	5569231	5569583	-	Cre12.g531651.t1.1	Cre12.g531651.t1.1		5569792,5568943	5570098,5569684	
chr12	5570252	5577850	5570392	5576918	+	Cre12.g531700.t1.1	Cre12.g531700.t1.1		5570252,5570609,5570807,5571191,5571587,5572226,5572693,5573115,5573386,5573788,5574075,5574569,5574854,5575243,5575625,5576130,5576494,5576818	5570541,5570696,5570965,5571355,5571823,5572364,5572865,5573177,5573601,5573866,5574316,5574646,5574994,5575379,5575789,5576319,5576666,5577850	
chr12	5577899	5582020	5578059	5581502	+	Cre12.g531750.t1.2	Cre12.g531750.t1.2		5577899,5578610,5578783,5579156,5579372,5579546,5580038,5580281,5580725,5580929,5581235	5578259,5578667,5578941,5579246,5579420,5579681,5580114,5580406,5580754,5581007,5582020	
chr12	5582095	5585291	5582273	5584811	+	FAP7	Cre12.g531800.t1.1		5582095,5582592,5582784,5583067,5583266,5583710,5584091	5582392,5582659,5582839,5583129,5583546,5583926,5585291	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr12	5585388	5588238	5586193	5587718	-	Cre12.g531850.t1.2	Cre12.g531850.t1.2		5587855,5587657,5587309,5586917,5585388	5588238,5587750,5587560,5587094,5586773	
chr12	5589465	5596118	5590059	5595849	-	FLVA	Cre12.g531900.t1.2		5595657,5595268,5594898,5594462,5594114,5593590,5593226,5592780,5592450,5592231,5591872,5591658,5591322,5590872,5590467,5589465	5596118,5595420,5594955,5594656,5594220,5593790,5593320,5593035,5592564,5592265,5592051,5591745,5591446,5591043,5590588,5590134	functions as a hetero-dimer with FLVB to reoxidize PSI acceptors and protect PSI against photoinhibition during transient/fluctuating illumination
chr12	5596543	5606278	5597388	5606154	-	Cre12.g531950.t1.1	Cre12.g531950.t1.1		5606109,5605449,5605145,5604533,5604323,5604069,5603798,5603522,5603307,5603152,5602862,5602512,5602295,5602092,5601832,5601480,5601179,5600765,5600397,5596543	5606278,5605740,5605190,5604616,5604413,5604156,5603884,5603640,5603375,5603224,5603028,5602675,5602382,5602184,5601946,5601639,5601311,5600941,5600480,5600175	
chr12	5596543	5606278	5597388	5605847	-	Cre12.g531950.t2.1	Cre12.g531950.t2.1		5606109,5605808,5605449,5605145,5604533,5604323,5604069,5603798,5603522,5603307,5603152,5602862,5602512,5602295,5602092,5601832,5601480,5601179,5600765,5600397,5596543	5606278,5605928,5605740,5605190,5604616,5604413,5604156,5603884,5603640,5603375,5603224,5603028,5602675,5602382,5602184,5601946,5601639,5601311,5600941,5600480,5600175	
chr12	5606414	5608060	5606958	5607747	+	Cre12.g532000.t1.1	Cre12.g532000.t1.1		5606414,5606707,5606947,5607248,5607615	5606586,5606756,5607049,5607447,5608060	
chr12	5608063	5614238	5608364	5614115	-	Cre12.g532050.t1.2	Cre12.g532050.t1.2		5614013,5613472,5613193,5612259,5611660,5611400,5611021,5610593,5610172,5610040,5609796,5609343,5609048,5608708,5608063	5614238,5613570,5613291,5613000,5612136,5611476,5611110,5610792,5610322,5610071,5609898,5609500,5609186,5608830,5608562	null-allele mutant was isolated (PMID 29743196)
chr12	5614339	5618836	5614432	5618343	+	Cre12.g532100.t1.2	Cre12.g532100.t1.2		5614339,5614569,5614774,5615022,5615799,5616925,5617429,5617838,5618139	5614498,5614694,5614875,5615316,5616005,5617113,5617622,5617888,5618836	
chr12	5618889	5629050	5619784	5628675	+	ERM7	Cre12.g532151.t1.1		5618889,5619306,5619517,5619688,5620035,5620397,5620642,5621591,5621816,5623289,5625245,5625736,5626196,5626794,5627136,5627473,5627805,5628135,5628500	5619183,5619393,5619578,5619827,5620233,5620500,5621425,5621697,5623186,5625124,5625582,5626035,5626609,5626910,5627261,5627625,5627944,5628314,5629050	transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration)
chr12	5629098	5634057	5629762	5633060	+	Cre12.g532200.t1.1	Cre12.g532200.t1.1		5629098,5629734,5629963,5630240,5631074,5631340,5631617,5631912,5632193,5632424	5629619,5629800,5630089,5630890,5631194,5631461,5631745,5632013,5632273,5634057	
chr12	5634929	5641704	5635602	5641536	+	Cre12.g532250.t1.1	Cre12.g532250.t1.1		5634929,5635405,5635581,5635738,5635895,5636623,5636951,5637516,5638191,5638619,5639582,5640033	5635199,5635462,5635606,5635798,5636474,5636769,5637373,5637935,5638526,5639437,5639806,5641704	
chr12	5641878	5644268	5642391	5644054	-	ATG10	Cre12.g532300.t1.1		5643859,5643190,5641878	5644268,5643657,5642874	Conserved E2-like conjugating enzyme; mediates formation of the Atg12-Atg5 conjugate, which is a critical step in autophagy
chr12	5644356	5646278	5644456	5645797	-	Cre12.g532314.t1.2	Cre12.g532314.t1.2		5646145,5645995,5645772,5645408,5644356	5646278,5646033,5645883,5645502,5645179	
chr12	5646333	5646758	5646349	5646655	-	Cre12.g532327.t1.2	Cre12.g532327.t1.2		5646547,5646333	5646758,5646469	
chr12	5646909	5669968	5648322	5669484	-	CAV8	Cre12.g532350.t1.1		5669157,5668830,5668445,5668177,5667107,5666673,5666355,5665667,5665270,5665057,5664708,5664425,5663928,5656010,5654665,5654327,5653840,5653524,5652912,5652609,5652198,5651718,5651099,5650723,5646909	5669968,5668964,5668568,5668296,5667505,5666884,5666402,5666138,5665433,5665152,5664900,5664564,5664257,5663765,5655887,5654443,5654048,5653671,5653310,5652713,5652395,5651950,5651359,5650837,5650479	E2-like enzyme mediating Apg12p conjugation; facilitates MAP-LC3 modification (PMID:12890687); end of first intron conserved in Volvox, possible regulatory or non-coding function; null-allele passenger mutation was isolated (PMID 29743196)
chr12	5673842	5678114	5674432	5677907	-	Cre12.g532400.t1.2	Cre12.g532400.t1.2		5677360,5676941,5676595,5675924,5675599,5673842	5678114,5677174,5676793,5676411,5675750,5675476	
chr12	5678929	5683534	5679498	5683332	-	Cre12.g532450.t1.2	Cre12.g532450.t1.2		5683236,5682826,5682415,5682128,5681658,5681273,5680829,5680436,5680032,5678929	5683534,5683010,5682583,5682235,5681876,5681428,5681032,5680608,5680179,5679816	
chr12	5683635	5687586	5683733	5687233	+	Cre12.g532500.t1.2	Cre12.g532500.t1.2		5683635,5684002,5684549,5684811,5685036,5685281,5685538,5685807,5686026,5686345,5686596,5686866,5687086	5683762,5684369,5684621,5684888,5685069,5685350,5685623,5685886,5686129,5686434,5686681,5686922,5687586	
chr12	5687588	5690374	5687679	5690170	-	RPL13A	Cre12.g532550.t1.1		5690304,5690113,5689730,5688370,5687588	5690374,5690196,5689887,5688544,5687811	Cytosolic 60S large ribosomal subunit protein L13a
chr12	5690475	5698944	5690717	5698270	+	CGL44	Cre12.g532600.t1.1		5690475,5691213,5691420,5691735,5696525,5696743	5690869,5691306,5691557,5696335,5696609,5698944	Conserved in the Green Lineage; null-allele mutant was isolated (PMID 29743196)
chr12	5699131	5704284	5699298	5704233	-	Cre12.g532650.t1.2	Cre12.g532650.t1.2		5704023,5703661,5703051,5702593,5702201,5701778,5701276,5700799,5700479,5700230,5699791,5699131	5704284,5703821,5703393,5702764,5702335,5701989,5701434,5701013,5700599,5700277,5699908,5699546	
chr12	5704435	5711856	5704540	5711235	+	Cre12.g532700.t1.1	Cre12.g532700.t1.1		5704435,5705612,5706320,5707143,5707810,5709970,5710375,5710850	5705363,5705912,5706884,5707674,5709751,5710121,5710573,5711856	
chr12	5711859	5716924	5712135	5716824	-	Cre12.g532750.t1.1	Cre12.g532750.t1.1		5716654,5715905,5714709,5714135,5712798,5712556,5711859	5716924,5716391,5715460,5714459,5713924,5712625,5712348	
chr12	5717225	5722136	5717563	5721679	+	Cre12.g532800.t1.2	Cre12.g532800.t1.2		5717225,5717855,5718722,5719047,5719565,5720217,5720474,5720856	5717644,5718520,5718803,5719218,5719970,5720294,5720613,5722136	
chr12	5722205	5726572	5722324	5726349	+	PHR3	Cre12.g532850.t1.1		5722205,5722784,5723120,5723366,5723621,5723960,5724588,5724838,5725033,5725354,5725647	5722531,5722898,5723226,5723447,5723757,5724130,5724720,5724923,5725221,5725458,5726572	
chr12	5731655	5732676	5732089	5732654	+	Cre12.g532867.t1.1	Cre12.g532867.t1.1		5731655	5732676	
chr12	5731784	5732676	5732089	5732654	+	Cre12.g532867.t2.1	Cre12.g532867.t2.1		5731784	5732676	
chr12	5732795	5734046	5732827	5733758	+	Cre12.g532900.t1.2	Cre12.g532900.t1.2		5732795	5734046	
chr12	5734429	5739554	5735660	5739462	-	Cre12.g532950.t1.2	Cre12.g532950.t1.2		5739297,5738929,5738597,5738307,5738001,5737601,5737298,5737090,5736785,5736526,5734429	5739554,5739043,5738703,5738388,5738137,5737771,5737430,5737175,5736973,5736630,5736326	
chr12	5739609	5747364	5740603	5747053	-	PHR1	Cre12.g533000.t1.2		5746841,5746493,5745984,5745384,5744921,5744427,5743891,5743161,5742320,5741660,5741206,5739609	5747364,5746598,5746094,5745488,5745076,5744547,5744080,5743331,5742470,5741755,5741283,5740945	CPD photolyase type II (Deoxyribodipyrimidine photolyase class 2)
chr12	5747495	5754636	5747644	5754049	+	Cre12.g533050.t1.2	Cre12.g533050.t1.2		5747495,5748407,5748988,5749589,5750099,5750697,5750962,5751439,5752064,5752569,5753153,5753606	5747926,5748548,5749055,5749694,5750349,5750819,5751099,5751528,5752171,5752682,5753318,5754636	
chr12	5754756	5757450	5754800	5756813	+	Cre12.g533100.t1.1	Cre12.g533100.t1.1		5754756,5755283,5755716,5755904,5756071,5756418,5756718	5755038,5755320,5755743,5755974,5756164,5756444,5757450	
chr12	5757912	5760501	5757940	5759992	+	Cre12.g533150.t1.1	Cre12.g533150.t1.1		5757912,5758513,5758712,5758950,5759254,5759732,5759927	5758111,5758554,5758783,5759048,5759344,5759758,5760501	
chr12	5761295	5763016	5761349	5762724	+	Cre12.g533201.t1.1	Cre12.g533201.t1.1		5761295,5761743,5761963,5762296,5762610	5761532,5761784,5762034,5762322,5763016	
chr12	5764039	5776114	5764786	5775893	-	Cre12.g533250.t1.1	Cre12.g533250.t1.1		5775556,5775234,5774691,5773974,5773108,5771495,5770720,5770402,5769556,5766742,5765872,5765394,5764039	5776114,5775337,5774747,5774314,5773753,5772538,5770826,5770438,5770147,5769287,5766381,5765471,5765086	null-allele mutant was isolated (PMID 29743196)
chr12	5776432	5785244	5776966	5785028	-	SRE2	Cre12.g533300.t1.2		5784959,5784265,5778758,5777889,5777491,5776432	5785244,5784552,5784048,5778573,5777658,5777284	RNA binding protein
chr12	5785365	5796932	5785521	5796494	+	CLPB5	Cre12.g533351.t1.1		5785365,5786485,5787109,5787681,5788295,5788826,5789120,5789491,5790044,5790675,5791122,5791474,5791825,5792093,5792861,5793337,5793717,5793972,5794440,5795076,5795697,5796278	5785620,5786701,5787221,5787788,5788415,5788890,5789197,5789631,5790238,5790821,5791241,5791530,5791962,5792321,5793049,5793401,5793783,5794126,5794842,5795209,5795801,5796932	predicted chloroplastic by Predalgo
chr12	5797119	5799724	5797477	5799555	-	Cre12.g533400.t1.1	Cre12.g533400.t1.1		5799480,5799299,5798709,5798155,5797119	5799724,5799350,5798786,5798351,5797744	
chr12	5801005	5801798	5801099	5801619	+	Cre12.g533426.t1.1	Cre12.g533426.t1.1		5801005,5801599	5801331,5801798	
chr12	5801904	5806484	5803221	5806218	-	Cre12.g533450.t1.2	Cre12.g533450.t1.2		5806023,5805729,5805381,5805098,5803916,5801904	5806484,5805930,5805591,5805254,5804056,5803569	
chr12	5807579	5826424	5809478	5826307	-	Cre12.g533500.t1.2	Cre12.g533500.t1.2		5826152,5826000,5825694,5825038,5824684,5824340,5822975,5822685,5822509,5822171,5819160,5818672,5818337,5817933,5817386,5816556,5810232,5807579	5826424,5826063,5825838,5825484,5824848,5824497,5824135,5822774,5822548,5822291,5821827,5818777,5818469,5818030,5817501,5817015,5816185,5809547	
chr12	5828219	5834159	5828287	5832866	+	PYK1	Cre12.g533550.t1.1		5828219,5828441,5828676,5828817,5829196,5830286,5830723,5831029,5831436,5831856,5832116,5832624	5828350,5828557,5828747,5828938,5829265,5830353,5830882,5831221,5831602,5831930,5832293,5834159	EC 2.7.1.40; catalyses the final step in glycolysis, which is the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP; Target-P predicts weak organelle targeting, but probably cytosolic based on similarity to plant cytosolic pyruvate kinases
chr12	5834245	5839736	5834412	5838504	+	Cre12.g533600.t1.1	Cre12.g533600.t1.1		5834245,5834639,5834849,5835156,5835464,5835943,5836349,5838419	5834473,5834742,5834941,5835276,5835591,5836145,5838196,5839736	
chr12	5839739	5842724	5840853	5842596	-	Cre12.g533650.t1.2	Cre12.g533650.t1.2		5842284,5841555,5841354,5839739	5842724,5841786,5841402,5841172	
chr12	5842845	5860496	5843664	5859789	+	Cre12.g533700.t1.1	Cre12.g533700.t1.1		5842845,5843326,5843653,5844058,5844332,5844650,5844984,5845302,5845914,5846164,5846450,5846673,5846930,5847328,5847626,5847814,5848147,5850530,5850794,5853518,5855056,5857664,5858715	5843224,5843431,5843874,5844117,5844457,5844800,5845192,5845768,5846010,5846242,5846477,5846768,5847158,5847418,5847676,5847881,5850301,5850624,5853338,5854954,5857511,5858542,5860496	Contains a periplasmic binding protein-like II domain and bacterial extracellular solute-binding (family 1) domain and a Class III nucleotidyl cyclase domain; may be involved in solute transport and early steps of a signal transduction cascade; null-allele passenger mutation was isolated (PMID 29743196)
chr12	5860529	5868254	5861363	5867910	-	Cre12.g533750.t1.1	Cre12.g533750.t1.1		5867730,5866818,5865872,5865431,5865025,5864574,5864240,5863912,5863412,5863195,5860529	5868254,5867582,5866535,5865630,5865207,5864811,5864352,5864118,5863597,5863269,5863043	
chr12	5869010	5873613	5869111	5872339	+	CYN22	Cre12.g533800.t1.2		5869010,5871032,5871206,5871495,5871941,5872168	5869290,5871086,5871238,5871587,5871973,5873613	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; cytosolic; similar to AtCYP22
chr12	5873852	5881461	5874264	5879106	+	Cre12.g533850.t1.1	Cre12.g533850.t1.1		5873852,5875189,5875430,5876853,5877213,5877798,5878890	5875017,5875277,5876588,5876936,5877559,5878674,5881461	
chr12	5881486	5892443	5882671	5892307	-	Cre12.g533900.t1.1	Cre12.g533900.t1.1		5892185,5891542,5891150,5890339,5889850,5889494,5889034,5888655,5888260,5887855,5887533,5887232,5886718,5886248,5885790,5885336,5884300,5883891,5883468,5881486	5892443,5891652,5891346,5890462,5890033,5889640,5889117,5888785,5888381,5887979,5887643,5887387,5886869,5886377,5885907,5885466,5884476,5884034,5883668,5883091	
chr12	5892542	5896333	5892587	5895632	+	COT1	Cre12.g533950.t1.1		5892542,5892981,5893396,5894008,5894353,5894570,5894973,5895491	5892838,5893038,5893599,5894160,5894401,5894676,5895113,5896333	
chr12	5896354	5899561	5896640	5899527	-	Cre12.g534000.t1.1	Cre12.g534000.t1.1		5897784,5896354	5899561,5897492	
chr12	5899972	5906217	5900633	5905186	+	FAP366	Cre12.g534050.t1.2		5899972,5900627,5901026,5901401,5901599,5901956,5902299,5902631,5902867,5903198,5903459,5903749,5904010,5904217,5904633,5905000	5900499,5900825,5901180,5901456,5901708,5902081,5902394,5902729,5903019,5903272,5903575,5903861,5904064,5904390,5904782,5906217	Similar to Phospholipase A2
chr12	5906468	5911401	5908349	5911245	-	CON2	Cre12.g534100.t1.1		5911131,5910353,5909527,5908905,5906468	5911401,5910556,5910205,5909371,5908763	CONSTANS-like protein that may be involved in circadian rhythms
chr12	5911609	5919361	5911974	5919285	-	Cre12.g534151.t1.1	Cre12.g534151.t1.1		5919184,5918936,5918543,5918045,5916920,5916396,5912507,5911609	5919361,5919000,5918806,5918409,5917887,5916819,5916212,5911974	Exodeoxyribonuclease III
chr12	5919516	5924573	5919608	5924437	+	Cre12.g534200.t1.1	Cre12.g534200.t1.1		5919516,5920096,5920393,5920743,5921574,5922075,5922356,5922975,5923483	5919953,5920157,5920591,5920850,5921789,5922175,5922728,5923139,5924573	
chr12	5924622	5927526	5924641	5927106	+	Cre12.g534250.t1.2	Cre12.g534250.t1.2		5924622,5925018,5925399,5925639,5925976,5926588,5926795,5927025	5924747,5925191,5925484,5925668,5926080,5926614,5926827,5927526	
chr12	5927536	5931201	5927741	5930927	-	Cre12.g534300.t1.1	Cre12.g534300.t1.1		5930803,5930274,5930083,5929103,5927536	5931201,5930585,5930126,5929901,5928871	
chr12	5931254	5936651	5932005	5936528	-	Cre12.g534302.t1.2	Cre12.g534302.t1.2		5936471,5936354,5936194,5936037,5935349,5935102,5934625,5934365,5933973,5933151,5931254	5936651,5936388,5936260,5936080,5935808,5935151,5934907,5934456,5934108,5933786,5933001	
chr12	5936752	5941400	5937059	5940514	+	HCD2	Cre12.g534350.t1.2		5936752,5937581,5938004,5938282,5938791,5939129,5939427,5939729,5940172,5940441	5937108,5937768,5938087,5938376,5938932,5939158,5939547,5939865,5940215,5941400	
chr12	5941452	5945004	5941587	5944658	+	Cre12.g534400.t1.1	Cre12.g534400.t1.1		5941452,5942277,5943052,5943429,5943910,5944220	5941778,5942431,5943126,5943544,5944005,5945004	
chr12	5945632	5947741	5945996	5947157	+	CGL86	Cre12.g534450.t1.1		5945632,5945987,5946139,5946473,5946998	5945674,5946042,5946207,5946639,5947741	Conserved in the Green Lineage
chr12	5947746	5950795	5948161	5950663	-	Cre12.g534500.t1.1	Cre12.g534500.t1.1		5950648,5950352,5950186,5949792,5949476,5949056,5948672,5947746	5950795,5950400,5950241,5949846,5949547,5949129,5948774,5948361	
chr12	5950912	5955599	5950948	5955303	+	PHR4	Cre12.g534550.t1.1		5950912,5951167,5951661,5951908,5952273,5952518,5953045,5953542,5953752,5954001,5954344,5955182	5951051,5951369,5951714,5952027,5952335,5952724,5953142,5953599,5953807,5954184,5954672,5955599	Similar to the photolyase/blue-light receptor (PHR2) in Arabidopsis
chr12	5955662	5956463	5956016	5956409	+	Cre12.g534576.t1.1	Cre12.g534576.t1.1		5955662,5956211	5956145,5956463	
chr12	5956512	5958983	5956630	5958403	+	TOM20	Cre12.g534600.t1.2		5956512,5956737,5956881,5957064,5957489,5957836,5958193	5956659,5956806,5956961,5957150,5957569,5957883,5958983	
chr12	5958986	5963851	5959941	5963475	-	Cre12.g534650.t1.1	Cre12.g534650.t1.1		5962419,5961941,5961618,5961384,5961106,5960694,5958986	5963851,5962132,5961784,5961480,5961194,5960849,5960446	
chr12	5963973	5966613	5964220	5966080	+	FKB19	Cre12.g534700.t1.2		5963973,5964540,5964814,5965071,5965315,5965494,5965879	5964264,5964654,5964885,5965134,5965361,5965598,5966613	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); probably directed to thylakoid lumen (homology to AtFKBP19 and bipartite cTP with RR motif)
chr12	5966616	5970271	5966809	5970105	-	Cre12.g534750.t1.1	Cre12.g534750.t1.1		5969972,5968696,5968277,5967824,5967561,5967220,5966616	5970271,5969818,5968532,5968142,5967697,5967330,5967046	
chr12	5970859	5979193	5970892	5978385	+	GCSP	Cre12.g534800.t1.1		5970859,5971154,5971482,5971868,5972371,5972971,5973478,5973923,5974265,5974929,5975509,5976071,5976560,5976961,5977461,5977755,5978124	5971034,5971247,5971667,5972020,5972527,5973132,5973714,5974009,5974483,5975161,5975668,5976323,5976741,5977254,5977588,5977926,5979193	Glycine dehydrogenase (decarboxylating). P protein subunit of the glycine cleavage system
chr12	5979554	5981121	5979853	5980997	-	Cre12.g534850.t1.2	Cre12.g534850.t1.2		5980943,5980655,5980192,5979554	5981121,5980816,5980275,5979964	
chr12	5982872	5984063	5983534	5983808	+	Cre12.g534876.t1.1	Cre12.g534876.t1.1		5982872	5984063	
chr12	5984185	5991371	5986402	5991028	-	Cre12.g534900.t1.1	Cre12.g534900.t1.1		5990853,5990654,5989961,5989692,5989042,5988328,5984185	5991371,5990689,5989993,5989742,5989432,5988880,5987977	
chr12	5991712	5993033	5991893	5992868	+	Cre12.g534915.t1.1	Cre12.g534915.t1.1		5991712,5992126,5992814	5992007,5992188,5993033	
chr12	5993722	5994873	5994412	5994632	+	Cre12.g534930.t1.1	Cre12.g534930.t1.1		5993722	5994873	
chr12	5995316	5997451	5995964	5996706	-	Cre12.g534945.t1.1	Cre12.g534945.t1.1		5996787,5996621,5996399,5995316	5997451,5996706,5996537,5996016	
chr12	5997552	6000264	5997878	6000197	+	Cre12.g534961.t1.2	Cre12.g534961.t1.2		5997552,5998214,5998579,5998975,5999283,6000197	5998045,5998304,5998658,5999025,5999997,6000264	
chr12	6000342	6002333	6000672	6002295	+	Cre12.g534980.t1.1	Cre12.g534980.t1.1		6000342,6000888,6001110,6001429,6001703,6001973	6000682,6000928,6001242,6001479,6001823,6002333	
chr12	6000342	6002333	6001466	6002295	+	Cre12.g534980.t2.1	Cre12.g534980.t2.1		6000342,6001110,6001429,6001703,6001973	6000928,6001242,6001479,6001823,6002333	
chr12	6002382	6007180	6003526	6005641	+	Cre12.g535019.t1.2	Cre12.g535019.t1.2		6002382,6002590,6003472,6003783,6004166,6005563	6002486,6003128,6003545,6003880,6005425,6007180	
chr12	6007316	6020017	6007812	6019047	+	Cre12.g535050.t1.1	Cre12.g535050.t1.1		6007316,6007960,6008276,6008572,6008806,6009223,6009517,6009818,6009990,6010261,6010567,6010965,6011292,6011546,6011853,6012112,6012699,6012980,6013232,6013665,6014765,6015203,6015451,6015720,6016028,6016673,6016897,6018969	6007880,6008065,6008355,6008580,6008959,6009330,6009649,6009868,6010110,6010316,6010811,6011065,6011359,6011676,6011890,6012563,6012895,6013107,6013514,6014642,6015062,6015275,6015580,6015887,6016396,6016756,6018831,6020017	
chr12	6020020	6024255	6020845	6023945	-	Cre12.g535100.t1.2	Cre12.g535100.t1.2		6023887,6023708,6023287,6022924,6022500,6022040,6021574,6021201,6020020	6024255,6023783,6023476,6023030,6022598,6022233,6021806,6021293,6020959	
chr12	6024310	6031055	6025212	6030743	-	Cre12.g535150.t1.1	Cre12.g535150.t1.1		6030731,6029910,6024310	6031055,6030542,6029574	
chr12	6031430	6036915	6032845	6036398	-	Cre12.g535201.t1.1	Cre12.g535201.t1.1		6036257,6035677,6032954,6031430	6036915,6036090,6035601,6032870	
chr12	6037129	6041795	6037810	6041323	-	Cre12.g535250.t1.1	Cre12.g535250.t1.1		6041543,6041314,6040968,6037129	6041795,6041445,6041087,6040774	
chr12	6042015	6049155	6043375	6048531	-	Cre12.g535300.t1.1	Cre12.g535300.t1.1		6048712,6048446,6048255,6048020,6047745,6042015	6049155,6048576,6048312,6048125,6047786,6047575	
chr12	6050190	6060695	6051430	6060430	-	Cre12.g535350.t1.2	Cre12.g535350.t1.2		6060391,6060153,6059579,6058960,6058509,6058088,6057484,6057021,6055858,6055501,6054682,6054157,6053387,6052657,6051988,6050190	6060695,6060245,6059782,6059048,6058648,6058269,6057843,6057204,6056207,6055628,6055065,6054291,6053823,6053034,6052316,6051730	
chr12	6061080	6066935	6061684	6066910	-	Cre12.g535400.t1.1	Cre12.g535400.t1.1		6066826,6066137,6065550,6065321,6064796,6064473,6064056,6063685,6062763,6061080	6066935,6066393,6065917,6065400,6065089,6064627,6064323,6063786,6063422,6062419	
chr12	6067066	6069227	6068057	6068825	+	Cre12.g535450.t1.2	Cre12.g535450.t1.2		6067066,6067899,6068441	6067294,6068177,6069227	
chr12	6067066	6069227	6068057	6068825	+	Cre12.g535450.t2.1	Cre12.g535450.t2.1		6067066,6067798,6067899,6068441	6067294,6067818,6068177,6069227	
chr12	6069374	6070465	6069995	6070242	-	Cre12.g535476.t1.1	Cre12.g535476.t1.1		6069374	6070465	
chr12	6070521	6075465	6072437	6075237	-	Cre12.g535500.t1.2	Cre12.g535500.t1.2		6073643,6073264,6070521	6075465,6073415,6072998	
chr12	6077460	6080685	6077740	6080498	-	Cre12.g535550.t1.1	Cre12.g535550.t1.1		6080444,6080037,6079653,6079263,6078688,6078420,6078211,6077460	6080685,6080096,6079745,6079365,6078794,6078527,6078264,6077986	
chr12	6080786	6083647	6080837	6083502	+	DNJ17	Cre12.g535600.t1.1		6080786,6081426,6081760,6082133,6083088,6083335	6081080,6081521,6081903,6082945,6083151,6083647	DnaJ-like protein, probably cytosolic; contains N-terminal J-domain (pfam226); no homology to other proteins in protein database
chr12	6083796	6086427	6083922	6084683	+	Cre12.g535650.t1.2	Cre12.g535650.t1.2		6083796,6084502	6084059,6086427	
chr12	6086448	6092985	6087039	6092943	-	HSP70D	Cre12.g535700.t1.1		6092678,6092263,6091687,6091172,6090706,6090425,6089904,6089300,6088932,6088530,6087926,6086448	6092985,6092402,6091761,6091301,6090797,6090509,6090084,6089414,6088967,6088598,6088108,6087405	HSP70D is one of 9 genes encoding HSP7-like proteins in Chlamydomonas; it is more similar to chloroplast than to mitochondrial HSP7s and contains an N-terminal extension, thus might be chloroplast-targeted; PMID: 16143837
chr12	6093086	6096942	6093177	6096566	+	CPA1	Cre12.g535750.t1.1		6093086,6093741,6094265,6094841,6095210,6095676,6096371	6093306,6093873,6094376,6094930,6095345,6095819,6096942	highly similar to plant N-carbamoylputrescine amidase (amidohydrolase), last step in the agmatinase pathway of polyamine (putrescine) biosynthesis
chr12	6097200	6114315	6097848	6113889	-	Cre12.g535800.t1.1	Cre12.g535800.t1.1		6113886,6113229,6112772,6111694,6111249,6110679,6110150,6109846,6109385,6108940,6107921,6106855,6106071,6104303,6103755,6102695,6102043,6101735,6101318,6100806,6100401,6099838,6098747,6097200	6114315,6113564,6112870,6112494,6111431,6110759,6110290,6109904,6109529,6109119,6108089,6107537,6106580,6105802,6103892,6103128,6102227,6101841,6101433,6100920,6100502,6099973,6099546,6098433	
chr12	6114426	6118170	6114527	6117882	+	RPL8	Cre12.g535851.t1.1		6114426,6114642,6114909,6115280,6115508,6116401,6117315,6117696	6114571,6114676,6115093,6115357,6115603,6116514,6117440,6118170	Cytosolic 60S large ribosomal subunit protein L8
chr12	6118436	6121265	6119064	6121146	-	ARL1	Cre12.g535900.t1.1		6121064,6120859,6120071,6119596,6118436	6121265,6120921,6120180,6119721,6119229	Expressed Protein. Arl1-type GTPase, involved in vesicle trafficking in the late secretory system. Called ARFE" group in Arabidopsis.
chr12	6121667	6128385	6122350	6127997	-	NUOS1	Cre12.g535950.t1.2		6127755,6127614,6127399,6126505,6125805,6125189,6124729,6124396,6123772,6123360,6122813,6121667	6128385,6127671,6127518,6126683,6126000,6125374,6124983,6124488,6123988,6123562,6123085,6122530	NADH:ubiquinone oxidoreductase (Complex I 78 kDa subunit), mitochondrial; [=NDUFS1 subunit]; gi 34485506 gb AAQ73136.1 ; PMID: 15710684; PMID: 15450959
chr12	6128440	6135915	6129189	6135801	-	ALA2	Cre12.g536000.t1.2		6135613,6135461,6134868,6134397,6133887,6133397,6133004,6132370,6132132,6131737,6131245,6130840,6130510,6130164,6129897,6128440	6135915,6135526,6135391,6134672,6134169,6133604,6133228,6132792,6132242,6131998,6131589,6131100,6130681,6130340,6130046,6129772	phospholipid-translocating P-type ATPase, flippase
chr12	6136706	6148690	6137064	6147824	+	ALA1	Cre12.g536050.t1.2		6136706,6137696,6138341,6139272,6139563,6139788,6140641,6140971,6141326,6141613,6142132,6142509,6142933,6143530,6143783,6144273,6144743,6145103,6145650,6146058,6146521	6137240,6137761,6138477,6139324,6139656,6140315,6140752,6141125,6141402,6141818,6142339,6142733,6143352,6143637,6144140,6144497,6144861,6145255,6145758,6146229,6148690	P-type ATPase; putative phospholipid-transporting ATPase (Aminophospholipid flippase)
chr12	6148817	6150511	6149463	6150406	-	FAP126	Cre12.g536100.t1.2		6150313,6149761,6148817	6150511,6149979,6149565	Flagellar Associated Protein; found in the flagellar proteome; in basal body proteome as BUG16 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 157384]
chr12	6150606	6153787	6150709	6152928	+	Cre12.g536150.t1.1	Cre12.g536150.t1.1		6150606,6151214,6151505	6150933,6151285,6153787	
chr12	6155057	6159378	6156103	6158534	-	Cre12.g536200.t1.1	Cre12.g536200.t1.1		6158677,6158443,6158006,6155057	6159378,6158557,6158211,6157795	
chr12	6161473	6162888	6161882	6162857	-	Cre12.g536251.t1.1	Cre12.g536251.t1.1		6162847,6162649,6162071,6161473	6162888,6162673,6162209,6161930	
chr12	6162989	6167580	6163067	6166923	+	Cre12.g536301.t1.1	Cre12.g536301.t1.1		6162989,6163434,6163814,6164269,6166156,6166923	6163223,6163676,6164117,6164886,6166843,6167580	
chr12	6173869	6177538	6174915	6177103	-	Cre12.g536350.t1.2	Cre12.g536350.t1.2		6177246,6177012,6176575,6173869	6177538,6177126,6176780,6176364	
chr12	6179763	6183128	6181497	6182740	-	Cre12.g536412.t1.2	Cre12.g536412.t1.2		6179763	6183128	
chr12	6183183	6185568	6183640	6184718	-	Cre12.g536425.t1.2	Cre12.g536425.t1.2		6184861,6184627,6184190,6183183	6185568,6184741,6184395,6183979	
chr12	6185623	6191568	6186387	6191464	-	Cre12.g536450.t1.2	Cre12.g536450.t1.2		6191286,6191091,6190806,6190509,6190143,6189573,6189411,6188696,6188058,6187409,6185623	6191568,6191140,6190848,6190561,6190217,6189756,6189448,6188844,6188193,6187921,6186387	
chr12	6185623	6191568	6186387	6191464	-	Cre12.g536450.t2.1	Cre12.g536450.t2.1		6191286,6191091,6190806,6190509,6190143,6188696,6188058,6187409,6185623	6191568,6191140,6190848,6190561,6190217,6188844,6188193,6187921,6186387	
chr12	6191679	6193714	6191911	6193188	+	CGL10	Cre12.g536500.t1.2		6191679,6192159,6192553,6193086	6191936,6192254,6192671,6193714	
chr12	6193753	6197548	6194248	6197391	-	DIC1	Cre12.g536550.t1.2		6197352,6197167,6196628,6195957,6195043,6193753	6197548,6197262,6197084,6196233,6195625,6194845	IC1 component of outer arm dynein; WD repeat protein
chr12	6197783	6210108	6198634	6209986	-	FAP78	Cre12.g536600.t1.1		6209938,6209695,6209043,6207980,6207573,6207141,6206430,6206010,6205049,6204347,6202653,6202315,6200396,6199898,6199462,6197783	6210108,6209869,6209239,6208753,6207766,6207286,6206815,6206174,6205780,6204731,6204122,6202460,6202096,6200150,6199703,6199183	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr12	6213749	6218270	6214620	6217230	+	Cre12.g536650.t1.2	Cre12.g536650.t1.2		6213749,6214597,6214924,6215403	6214465,6214702,6215132,6218270	
chr12	6219643	6220094	6219763	6220025	-	Cre12.g536683.t1.1	Cre12.g536683.t1.1		6219643	6220094	
chr12	6220403	6221388	6220766	6221344	-	Cre12.g536716.t1.1	Cre12.g536716.t1.1		6221301,6220403	6221388,6221149	
chr12	6222799	6226036	6222877	6224762	+	Cre12.g536750.t1.2	Cre12.g536750.t1.2		6222799,6223172,6223784,6224186,6224531	6223076,6223237,6223998,6224359,6226036	
chr12	6226043	6226568	6226315	6226493	-	Cre12.g536776.t1.1	Cre12.g536776.t1.1		6226043	6226568	
chr12	6226623	6230758	6227666	6230726	-	CGL52	Cre12.g536800.t1.2		6230548,6229907,6229347,6228648,6228223,6226623	6230758,6230046,6229427,6228793,6228403,6227783	
chr12	6230879	6234228	6231069	6234173	-	Cre12.g536850.t1.1	Cre12.g536850.t1.1		6233352,6232925,6232460,6232188,6231761,6230879	6234228,6233126,6232665,6232263,6231819,6231526	
chr12	6234389	6248630	6234550	6248212	+	Cre12.g536900.t1.1	Cre12.g536900.t1.1		6234389,6234908,6235517,6236043,6236835,6237147,6238057,6238840,6239328,6240381,6240934,6243250,6243590,6244483,6245196,6245544,6246071,6246962,6247507,6248064	6234607,6235067,6235599,6236398,6236968,6237787,6238425,6239094,6239630,6240551,6241793,6243321,6243803,6244803,6245315,6245761,6246560,6247211,6247639,6248630	
chr12	6248849	6256260	6248973	6254262	+	Cre12.g536950.t1.1	Cre12.g536950.t1.1		6248849,6251603	6251369,6256260	
chr12	6256570	6259730	6256611	6258807	+	Cre12.g537000.t1.2	Cre12.g537000.t1.2		6256570,6256933,6257245,6257586,6258296,6258699	6256768,6257011,6257303,6257668,6258367,6259730	
chr12	6260059	6261270	6260158	6260571	+	Cre12.g537050.t1.2	Cre12.g537050.t1.2		6260059,6260347,6260532	6260237,6260432,6261270	
chr12	6261272	6277558	6261891	6277179	-	TSV2	Cre12.g537100.t1.2		6277068,6276799,6276545,6276085,6275832,6275326,6274885,6274542,6274153,6273683,6272802,6272190,6271765,6271187,6269994,6269524,6269090,6268744,6268334,6267914,6267386,6266899,6265969,6265545,6265137,6264508,6264310,6264063,6263633,6263207,6262717,6262363,6261272	6277558,6276859,6276594,6276177,6275912,6275482,6274973,6274640,6274299,6273807,6272937,6272328,6271898,6271321,6270160,6269635,6269221,6268839,6268441,6268022,6267528,6267002,6266104,6265649,6265241,6264717,6264372,6264125,6263764,6263387,6262815,6262460,6262071	
chr12	6278143	6286138	6278945	6285678	-	Cre12.g537150.t1.2	Cre12.g537150.t1.2		6285417,6284963,6284456,6284168,6283711,6283213,6282773,6282439,6282179,6282013,6281625,6281300,6281042,6280648,6280219,6279851,6279527,6278143	6286138,6285123,6284576,6284302,6283853,6283366,6282873,6282597,6282242,6282050,6281827,6281424,6281106,6280733,6280289,6279958,6279646,6279266	
chr12	6286655	6298508	6287497	6298306	-	OGD1	Cre12.g537200.t1.2		6298105,6297898,6297299,6296940,6296556,6295700,6295223,6294833,6294322,6293850,6293460,6292911,6292483,6291954,6291392,6290629,6290203,6289716,6289247,6288474,6287970,6286655	6298508,6297961,6297447,6297052,6296673,6295866,6295329,6294921,6294488,6294000,6293609,6293081,6292614,6292095,6291535,6290810,6290337,6289865,6289403,6288592,6288166,6287621	Probable 2-oxoglutarate dehydrogenase (alpha-ketoglutarate dehydrogenase) E1 subunit (EC 1.2.4.2); mitochondrial location predicted by Target-P
chr12	6298941	6304658	6299420	6303484	-	Cre12.g537226.t1.1	Cre12.g537226.t1.1		6303970,6303036,6301395,6300758,6299900,6299681,6298941	6304658,6303725,6302779,6301018,6300089,6299791,6299420	
chr12	6309790	6320778	6311573	6319862	-	Cre12.g537250.t1.2	Cre12.g537250.t1.2		6320284,6319454,6318987,6318657,6318107,6317471,6316890,6316542,6316104,6315674,6315376,6314922,6314477,6313894,6313515,6313125,6312676,6312320,6309790	6320778,6319891,6319183,6318774,6318325,6317583,6317043,6316642,6316256,6315737,6315413,6315121,6314601,6313958,6313603,6313195,6312783,6312439,6311930	
chr12	6322023	6325028	6323221	6324841	-	Cre12.g537300.t1.2	Cre12.g537300.t1.2		6324825,6324591,6324046,6322023	6325028,6324746,6324317,6323512	
chr12	6335107	6339182	6335252	6337571	-	NZP1	Cre12.g537350.t1.1		6338905,6338135,6337489,6337015,6336463,6336028,6335658,6335344,6335107	6339182,6338580,6337634,6337228,6336814,6336112,6335725,6335513,6335283	
chr12	6335107	6337672	6335252	6337571	-	NZP1	Cre12.g537350.t2.1		6337489,6337015,6336463,6336028,6335658,6335344,6335107	6337672,6337228,6336814,6336112,6335725,6335513,6335283	
chr12	6340480	6344072	6343226	6343440	-	Cre12.g537371.t1.2	Cre12.g537371.t1.2		6340480	6344072	
chr12	6344127	6353232	6345176	6352890	-	Cre12.g537400.t1.1	Cre12.g537400.t1.1		6352870,6352408,6351737,6351240,6350554,6350184,6349638,6349279,6348662,6348167,6347784,6347267,6346516,6344127	6353232,6352491,6352225,6351293,6350698,6350297,6349805,6349337,6348764,6348232,6347875,6347462,6346887,6346157	
chr12	6354051	6356082	6354582	6356030	-	COX13	Cre12.g537450.t1.2		6355855,6355015,6354051	6356082,6355157,6354642	Cytochrome c oxidase COX13 (CoxVIa) subunit (12 kDa) [PMID: 12746537]; (= human/yeast COX6a subunit); not essential for cytochrome c oxidase activity but may modulate activity in response to ATP [PMID: 15710684]
chr12	6356183	6369854	6356298	6369108	+	Cre12.g537500.t1.1	Cre12.g537500.t1.1		6356183,6356873,6357401,6358026,6358634,6359064,6359483,6360143,6360926,6361299,6362094,6362584,6363671,6363946,6364365,6364888,6366251,6366788,6368037,6368507	6356403,6356938,6357469,6358121,6358725,6359208,6359861,6360267,6361081,6361390,6362180,6363412,6363781,6364004,6364426,6365870,6366468,6367640,6368224,6369854	
chr12	6370063	6375502	6370522	6375341	-	Cre12.g537550.t1.1	Cre12.g537550.t1.1		6375049,6374682,6373731,6373136,6372539,6372047,6371420,6371047,6370063	6375502,6374752,6373778,6373260,6372578,6372122,6371552,6371154,6370646	May contain additional coding sequence in intronic N-island PMID: 27175017
chr12	6375607	6383512	6376391	6383125	-	Cre12.g537581.t1.1	Cre12.g537581.t1.1		6382973,6382824,6382627,6382411,6381883,6379235,6378933,6377902,6377356,6376975,6375607	6383512,6382897,6382694,6382531,6381992,6379363,6379037,6378126,6377499,6377096,6376713	May contain additional coding sequence in intronic N-island PMID: 27175017
chr12	6383803	6386262	6384512	6385871	+	Cre12.g537611.t1.1	Cre12.g537611.t1.1		6383803,6384889,6385322,6385826	6384653,6384963,6385459,6386262	
chr12	6386633	6394764	6386774	6394153	+	Cre12.g537641.t1.1	Cre12.g537641.t1.1		6386633,6387179,6387960,6388765,6389170,6389994,6391898,6392520,6393028,6393351,6393761,6394024	6387069,6387350,6388015,6388841,6389316,6390151,6392056,6392621,6393181,6393467,6393820,6394764	
chr12	6394767	6413502	6395508	6412771	-	Cre12.g537671.t1.1	Cre12.g537671.t1.1		6413180,6412676,6412463,6412301,6411765,6411518,6410768,6410441,6409687,6409270,6408345,6407984,6407636,6406975,6406589,6406069,6405707,6405167,6404701,6404309,6403446,6402447,6401942,6401137,6400463,6400041,6394767	6413502,6412776,6412567,6412337,6411902,6411621,6411341,6410591,6410164,6409494,6408960,6408161,6407774,6407290,6406654,6406395,6405853,6405490,6404976,6404497,6404100,6403225,6402064,6401505,6400636,6400193,6399753	
chr12	6414167	6417752	6414633	6417617	-	Cre12.g537700.t1.2	Cre12.g537700.t1.2		6417499,6417176,6416808,6416039,6415234,6414167	6417752,6417220,6416903,6416378,6415780,6414786	
chr12	6417853	6426714	6418087	6425657	+	Cre12.g537750.t1.2	Cre12.g537750.t1.2		6417853,6418263,6418457,6419060,6419487,6420057,6420411,6420630,6422442,6422850,6423522,6424166,6424617,6425041,6425579	6418129,6418348,6418733,6419231,6419687,6420244,6420455,6422145,6422587,6423080,6423680,6424266,6424715,6425122,6426714	
chr12	6426853	6430691	6426989	6430406	+	RPL7	Cre12.g537800.t1.2		6426853,6427496,6427962,6428664,6428935,6429838,6430406	6427154,6427615,6428021,6428774,6428982,6430056,6430691	Cytosolic 60S large ribosomal subunit protein L7
chr12	6430813	6434184	6431323	6434081	-	CCB2	Cre12.g537850.t1.2		6433930,6433652,6433205,6432450,6431725,6430813	6434184,6433812,6433381,6432605,6431945,6431390	involved in heme c covalent linkage to cytochrome b6. Conserved among organisms performing oxygenic photosynthesis. The protein is localized to the chloroplast and homologous to CCB4. PMID: 17535914
chr12	6436273	6440464	6436653	6440142	+	Cre12.g537900.t1.1	Cre12.g537900.t1.1		6436273,6436984,6437295,6437588,6437950,6438295,6438575,6439962	6436839,6437098,6437359,6437733,6438063,6438393,6438728,6440464	
chr12	6440657	6443892	6441270	6443328	-	Cre12.g537950.t1.1	Cre12.g537950.t1.1		6443644,6443262,6443108,6442796,6440657	6443892,6443449,6443159,6443028,6441870	
chr12	6444431	6446667	6445468	6446548	-	EZY5	Cre12.g538000.t1.2		6446410,6446230,6445983,6444431	6446667,6446311,6446137,6445606	Early zygote expressed protein of unknown function activated upon fus mating [PMID: 1848763]
chr12	6446717	6452176	6447939	6451960	-	Cre12.g538050.t1.2	Cre12.g538050.t1.2		6451907,6451417,6451065,6450718,6450382,6450075,6449484,6449115,6448620,6448180,6446717	6452176,6451501,6451183,6450871,6450493,6450202,6449780,6449272,6448823,6448453,6447984	
chr12	6452364	6456562	6452951	6456356	-	Cre12.g538100.t1.2	Cre12.g538100.t1.2		6456232,6455963,6455516,6455165,6454807,6454463,6453931,6453682,6453433,6452364	6456562,6456109,6455671,6455223,6454864,6454596,6454050,6453710,6453517,6453086	
chr12	6456733	6459505	6457059	6459358	-	Cre12.g538150.t1.2	Cre12.g538150.t1.2		6459170,6458834,6458269,6457836,6457337,6456733	6459505,6458957,6458386,6457898,6457497,6457143	
chr12	6459623	6469429	6459763	6468952	+	Cre12.g538200.t1.2	Cre12.g538200.t1.2		6459623,6460092,6460765,6461525,6462058,6462639,6462950,6463589,6464021,6464521,6464906,6465237,6465617,6466081,6466591,6467072,6467569,6467750,6468160,6468664	6459901,6460496,6461167,6461793,6462259,6462742,6463254,6463781,6464177,6464653,6465062,6465323,6465768,6466224,6466720,6467237,6467623,6467880,6468278,6469429	
chr12	6469437	6473362	6469528	6473019	-	Cre12.g538250.t1.1	Cre12.g538250.t1.1		6473216,6472361,6471866,6471571,6470487,6469437	6473362,6473067,6472051,6471645,6471356,6470187	
chr12	6473633	6479228	6474216	6477941	+	LF5	Cre12.g538300.t1.1		6473633,6474394,6474624,6474897,6475279,6475566,6475965,6476277,6476624,6477091	6474278,6474503,6474733,6474974,6475381,6475737,6476053,6476418,6476830,6479228	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; SSA1; identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA); Similar to MAPK3
chr12	6479423	6481287	6479616	6480879	+	FTX1	Cre12.g538350.t1.1		6479423,6479812,6479969,6480217,6480521,6480755	6479736,6479867,6480044,6480264,6480615,6481287	frataxin; mitochondrial precursor (FRDA1)
chr12	6481393	6482384	6481476	6481687	+	Cre12.g538376.t1.1	Cre12.g538376.t1.1		6481393	6482384	
chr12	6482387	6485152	6483188	6485017	-	RPB4	Cre12.g538400.t1.2		6484736,6484408,6483968,6483558,6482387	6485152,6484471,6484045,6483633,6483295	N-terminal portion similar to yeast RNB7 (DNA-directed RNA polymerase subunit), 19 kDa subunit
chr12	6485507	6489312	6486565	6489145	-	EPT1	Cre12.g538450.t1.2		6489039,6488782,6488376,6487871,6487542,6487117,6485507	6489312,6488895,6488602,6488063,6487648,6487238,6486848	CDP-Etn:DAG Ethanolamine phosphotransferase in Kennedy pathway for PtdEtn biosynthesis
chr12	6489583	6491417	6490761	6491368	-	Cre12.g538492.t1.2	Cre12.g538492.t1.2		6491189,6490967,6489583	6491417,6491067,6490781	
chr12	6491528	6496549	6491570	6496060	+	Cre12.g538500.t1.1	Cre12.g538500.t1.1		6491528,6491745,6491936,6492143,6492401,6492660,6493237,6494310,6495356,6495844	6491676,6491866,6492063,6492297,6492489,6493027,6493295,6494980,6495616,6496549	
chr12	6499008	6503645	6499543	6503002	+	Cre12.g538550.t1.2	Cre12.g538550.t1.2		6499008,6499780,6500161,6500726,6500959	6499546,6499882,6500576,6500839,6503645	
chr12	6503662	6507287	6503973	6506995	-	Cre12.g538600.t1.2	Cre12.g538600.t1.2		6506803,6506297,6505953,6505782,6505163,6504959,6503662	6507287,6506410,6506027,6505820,6505568,6505053,6504663	
chr12	6507818	6510329	6507900	6509883	+	HEM4	Cre12.g538650.t1.1		6507818,6508300,6508564,6508855,6509097,6509482,6509727	6508119,6508362,6508683,6508917,6509255,6509589,6510329	Putative uroporphyrin III methyltransferase (part). [=HEMD; COBA; CYSG].
chr12	6510428	6516421	6510644	6515700	+	CPLD62	Cre12.g538700.t1.2		6510428,6510888,6511354,6512154,6512500,6512852,6513345,6513716,6514042,6514484,6514750,6515066,6515553	6510787,6510947,6511912,6512311,6512671,6513079,6513455,6513863,6514321,6514653,6514948,6515399,6516421	
chr12	6516480	6517887	6517254	6517636	-	LSM1	Cre12.g538750.t1.2		6516480	6517887	gi 15373175 gb BI532601.1 BI532601, putative U6 snRNA-associated Sm-like protein LSm1, RNA cap binding; (SMP6d)
chr12	6518612	6521437	6519508	6521115	-	Cre12.g538801.t1.1	Cre12.g538801.t1.1		6519767,6518612	6521437,6519633	
chr12	6521492	6529677	6522077	6529391	-	Cre12.g538850.t1.1	Cre12.g538850.t1.1		6529110,6528882,6528340,6527940,6527508,6527228,6527060,6526884,6526524,6526090,6525661,6525353,6524902,6524447,6524060,6523764,6523473,6523184,6522836,6522553,6521492	6529677,6529021,6528652,6528074,6527704,6527334,6527129,6526930,6526724,6526341,6525912,6525506,6525107,6524689,6524238,6523858,6523638,6523298,6522898,6522604,6522460	
chr12	6530126	6533226	6530626	6533090	-	Cre12.g538900.t1.2	Cre12.g538900.t1.2		6533036,6532568,6532240,6532035,6531648,6531189,6530886,6530126	6533226,6532741,6532377,6532123,6531842,6531405,6531074,6530728	
chr12	6533318	6535342	6533503	6534521	+	Cre12.g538950.t1.2	Cre12.g538950.t1.2		6533318,6533959,6534116,6534456	6533650,6534010,6534235,6535342	
chr12	6535548	6539526	6535779	6539040	+	ECT1	Cre12.g539000.t1.2		6535548,6536052,6536348,6536629,6537041,6537353,6537868,6538272,6538550,6538851	6535908,6536124,6536424,6536770,6537189,6537442,6538095,6538399,6538676,6539526	CDP-Ethanolamine synthase involved in Kennedy pathway for phosphatidylethanolamine biosynthesis; regulatory enzyme in the CDP-ethanolamine pathway of phosphatidylethanolamine (PE) biosynthesis [PMID: 15147238]; CTP:ethanolamine cytidylyltransferase
chr12	6539572	6545777	6539699	6545206	-	Cre12.g539050.t1.1	Cre12.g539050.t1.1		6545163,6544844,6544481,6544173,6543828,6543587,6543334,6542841,6542492,6540023,6539572	6545777,6544995,6544636,6544301,6543932,6543727,6543442,6543245,6542682,6542365,6539927	
chr12	6546338	6547469	6546780	6547141	+	Cre12.g539076.t1.1	Cre12.g539076.t1.1		6546338	6547469	
chr12	6548468	6553976	6548956	6553199	+	HEL57	Cre12.g539100.t1.1		6548468,6548921,6550028,6550479,6550993,6551351,6551823,6552293,6552676,6552984	6548580,6549545,6550189,6550627,6551151,6551524,6552032,6552424,6552757,6553976	Most similar to At1g3197; contains stretches of 1 and 9 His residues
chr12	6577938	6578789	6578007	6578353	+	Cre12.g539121.t1.1	Cre12.g539121.t1.1		6577938,6578224	6578043,6578789	
chr12	6603467	6605407	6604264	6604638	-	Cre12.g539141.t1.1	Cre12.g539141.t1.1		6604427,6603467	6605407,6604269	
chr12	6730236	6732392	6730287	6732312	-	Cre12.g539150.t1.2	Cre12.g539150.t1.2		6730539,6730236	6732392,6730422	
chr12	6608992	6609607	6609274	6609530	-	Cre12.g539161.t1.1	Cre12.g539161.t1.1		6608992	6609607	
chr12	6617412	6620817	6620212	6620414	-	Cre12.g539181.t1.1	Cre12.g539181.t1.1		6617412	6620817	
chr12	6623182	6625887	6623511	6625008	-	Cre12.g539200.t1.2	Cre12.g539200.t1.2		6625805,6625488,6624990,6624300,6623763,6623182	6625887,6625527,6625044,6624408,6623862,6623511	
chr12	6623182	6625887	6623511	6625008	-	Cre12.g539200.t2.1	Cre12.g539200.t2.1		6625805,6625488,6624990,6624300,6623746,6623182	6625887,6625527,6625044,6624408,6623862,6623511	
chr12	6625962	6629844	6628119	6629565	-	Cre12.g539201.t2.1	Cre12.g539201.t2.1		6629562,6628718,6628231,6625962	6629844,6628889,6628313,6628176	
chr12	6625612	6629817	6628286	6629565	-	Cre12.g539201.t1.1	Cre12.g539201.t1.1		6629562,6628704,6625612	6629817,6628889,6628313	
chr12	6629962	6631607	6631250	6631578	-	Cre12.g539202.t1.1	Cre12.g539202.t1.1		6629962	6631607	
chr12	6643662	6645097	6643811	6645033	-	Cre12.g539203.t1.1	Cre12.g539203.t1.1		6643662	6645097	
chr12	6648230	6653887	6648515	6653339	-	Cre12.g539204.t1.1	Cre12.g539204.t1.1		6653317,6652099,6651035,6650139,6649671,6649099,6648230	6653887,6652455,6651460,6650338,6650084,6649129,6648586	
chr12	6662091	6664967	6662808	6664726	-	Cre12.g539205.t1.1	Cre12.g539205.t1.1		6664616,6663797,6663455,6662091	6664967,6663863,6663553,6662841	
chr12	6705523	6707954	6705606	6707800	+	Cre12.g539206.t1.1	Cre12.g539206.t1.1		6705523	6707954	
chr12	6705879	6707954	6705963	6707800	+	Cre12.g539206.t2.1	Cre12.g539206.t2.1		6705879	6707954	
chr12	6708277	6710642	6708320	6710611	-	Cre12.g539207.t1.1	Cre12.g539207.t1.1		6709266,6708777,6708277	6710642,6708884,6708382	
chr12	6709018	6710642	6709204	6710611	-	Cre12.g539207.t2.1	Cre12.g539207.t2.1		6709344,6709018	6710642,6709233	
chr12	6723243	6724154	6723288	6723976	+	Cre12.g539208.t1.1	Cre12.g539208.t1.1		6723243	6724154	
chr12	6724473	6726454	6724501	6726348	+	Cre12.g539209.t1.1	Cre12.g539209.t1.1		6724473,6726272	6726177,6726454	
chr12	6724473	6726074	6724501	6725995	+	Cre12.g539209.t2.1	Cre12.g539209.t2.1		6724473,6725987	6725939,6726074	
chr12	9443595	9465850	9444716	9465824	-	Cre12.g539650.t1.1	Cre12.g539650.t1.1		9465797,9465490,9464938,9464340,9463801,9463280,9462527,9461848,9461186,9460619,9459751,9458748,9457243,9455710,9455287,9453853,9453448,9452851,9452216,9451890,9451531,9451023,9446677,9445248,9443595	9465850,9465663,9465198,9464699,9464012,9463467,9462859,9462075,9461649,9460724,9460289,9459542,9458550,9457028,9455434,9455064,9453584,9453219,9452444,9451988,9451629,9451231,9450757,9446392,9445161	
chr12	9440022	9443540	9440745	9442950	-	Cre12.g539700.t1.2	Cre12.g539700.t1.2		9441450,9440022	9443540,9441120	
chr12	9435195	9439760	9435845	9439381	-	Cre12.g539750.t1.2	Cre12.g539750.t1.2		9439295,9438884,9438361,9437992,9437625,9437034,9436137,9435195	9439760,9438989,9438703,9438076,9437739,9437152,9436645,9435931	
chr12	9432802	9434910	9433624	9434856	-	Cre12.g539800.t1.2	Cre12.g539800.t1.2		9434556,9433923,9432802	9434910,9434321,9433687	
chr12	9433726	9434910	9433878	9434856	-	Cre12.g539800.t2.1	Cre12.g539800.t2.1		9434556,9434006,9433726	9434910,9434321,9433922	
chr12	9425825	9430390	9426009	9430124	-	Cre12.g539850.t1.1	Cre12.g539850.t1.1		9429931,9429162,9428801,9428380,9427984,9427584,9427120,9426281,9425825	9430390,9429759,9428857,9428488,9428070,9427692,9427388,9426930,9426157	
chr12	9425825	9430390	9426009	9430124	-	Cre12.g539850.t2.1	Cre12.g539850.t2.1		9429931,9429162,9428801,9428380,9427984,9427584,9427120,9426281,9425825	9430390,9429756,9428857,9428488,9428070,9427692,9427388,9426930,9426157	
chr12	9418591	9423842	9418709	9422893	+	Cre12.g539900.t1.1	Cre12.g539900.t1.1		9418591,9419271,9419635,9420064,9420477,9420857,9421390,9421927,9422617	9419099,9419348,9419718,9420135,9420617,9421025,9421765,9422059,9423842	
chr12	9397945	9413970	9398562	9413789	-	Cre12.g540050.t1.2	Cre12.g540050.t1.2		9413616,9413306,9412872,9412397,9411742,9411261,9410695,9410201,9407662,9407043,9406230,9405721,9405137,9404590,9403571,9402795,9400750,9400073,9399687,9397945	9413970,9413359,9412976,9412605,9412082,9411374,9410765,9410334,9407948,9407294,9406670,9405813,9405283,9404740,9404232,9402956,9402294,9400609,9399778,9399262	
chr12	9414091	9418542	9414272	9417579	+	Cre12.g540051.t1.1	Cre12.g540051.t1.1		9414091,9415571,9416165,9416507,9416888,9417546	9414845,9415703,9416267,9416573,9416980,9418542	
chr12	9483648	9491340	9484154	9491242	-	Cre12.g540076.t1.1	Cre12.g540076.t1.1		9491173,9490909,9490711,9490443,9490026,9489806,9489625,9489477,9489303,9488997,9488641,9488431,9488156,9487768,9487505,9487325,9487109,9486766,9486464,9486187,9485959,9485453,9485292,9485002,9484670,9484471,9483648	9491340,9491035,9490767,9490546,9490211,9489893,9489689,9489533,9489387,9489184,9488868,9488529,9488307,9487951,9487621,9487410,9487229,9486875,9486629,9486327,9486044,9485618,9485339,9485136,9484795,9484547,9484344	ts-lethal mutants arrest at G1 (PMID 29743196)
chr12	9394254	9397870	9396281	9397680	-	Cre12.g540100.t1.1	Cre12.g540100.t1.1		9397583,9397227,9394254	9397870,9397329,9396963	
chr12	9394254	9397870	9396281	9397680	-	Cre12.g540100.t2.1	Cre12.g540100.t2.1		9397583,9397227,9394254	9397870,9397293,9396963	
chr12	9386095	9390000	9387803	9389901	-	Cre12.g540150.t1.1	Cre12.g540150.t1.1		9389814,9389226,9388937,9388536,9388102,9386095	9390000,9389361,9389098,9388583,9388277,9387851	
chr12	9386095	9390000	9387803	9389901	-	Cre12.g540150.t2.1	Cre12.g540150.t2.1		9389814,9389226,9388937,9388102,9386095	9390000,9389361,9389098,9388277,9387851	
chr12	9377801	9385372	9377832	9384837	+	HEL58	Cre12.g540200.t1.2		9377801,9378057,9378403,9379756,9380557,9381750,9382212,9383406	9377940,9378149,9378936,9379836,9381225,9381971,9382427,9385372	
chr12	9376115	9377660	9376711	9377380	-	SELW1	Cre12.g540250.t1.2		9377516,9377322,9376946,9376115	9377660,9377398,9376992,9376789	Model is truncated at N-terminus due to UGA Sec codon; add sequence MAPVQVHVLYCGGUGYGSRYRSLENAIR, with Selenocysteine in position 14; INFERNAL locates SECIS element @ 6739286-6739358; gene is linked to SELW2
chr12	9369229	9372420	9369321	9372110	+	RCD2	Cre12.g540350.t1.2		9369229,9369784,9370254,9370465,9371043,9371726,9372010	9369613,9369890,9370316,9370536,9371509,9371827,9372420	similar to Rcd1-like proteins, which are involved in cell differentiation/sexual development; highly conserved among eukaryotes; retinoic acid-induced cell differentiation; control of sexual development
chr12	9372453	9374662	9373590	9374579	-	SELW2	Cre12.g540351.t1.1		9374576,9374508,9374220,9373811,9372453	9374662,9374535,9374295,9373852,9373651	Deduced protein sequence is completely wrong due to UGA Sec codon; see XP_001693902.1 for correct sequence; contains a Selenocysteine in position 16; linked to SELW1
chr12	9365575	9369178	9365851	9368531	+	RCD1	Cre12.g540400.t1.2		9365575,9366523,9367259,9367689,9368186,9368431	9366158,9366629,9367393,9367849,9368275,9369178	similar to Rcd1-like proteins, which are involved in cell differentiation/sexual development; highly conserved among eukaryotes; retinoic acid-induced cell differentiation; control of sexual development
chr12	9362619	9365370	9362875	9364895	+	Cre12.g540450.t1.2	Cre12.g540450.t1.2		9362619,9362984,9363221,9363572,9363987,9364396	9362908,9363080,9363432,9363681,9364133,9365370	
chr12	9360293	9362088	9360730	9361693	-	Cre12.g540480.t1.1	Cre12.g540480.t1.1		9361661,9360293	9362088,9361076	
chr12	9357559	9360127	9357601	9359292	+	CGL108	Cre12.g540500.t1.2		9357559,9357762,9357968,9358457,9359197	9357673,9357871,9358277,9358583,9360127	ts-lethal mutant was isolated (PMID 29743196)
chr12	9491459	9492942	9491648	9492831	+	Cre12.g540502.t1.1	Cre12.g540502.t1.1		9491459,9491868,9492045,9492267,9492831	9491702,9491960,9492119,9492722,9492942	
chr12	9346349	9357510	9346462	9357180	+	Cre12.g540550.t1.1	Cre12.g540550.t1.1		9346349,9347260,9347948,9348594,9349104,9349610,9349966,9355233,9355890,9356284,9356730	9346519,9347366,9348055,9348707,9349158,9349712,9350108,9355361,9355994,9356385,9357510	
chr12	9329950	9346028	9331675	9345711	-	Cre12.g540650.t1.2	Cre12.g540650.t1.2		9345690,9345117,9344731,9343839,9343502,9343089,9342790,9342431,9342178,9341814,9341303,9340955,9340620,9340397,9340077,9339693,9339317,9338870,9338426,9337653,9337217,9336879,9336308,9335928,9335402,9335139,9334557,9334089,9333805,9333322,9332839,9332536,9332106,9329950	9346028,9345442,9344812,9344307,9343617,9343191,9342827,9342511,9342251,9341919,9341502,9341054,9340736,9340473,9340193,9339792,9339377,9339018,9338549,9338153,9337446,9336980,9336442,9336064,9335581,9335252,9334782,9334192,9333886,9333518,9332986,9332582,9332225,9331781	
chr12	9325329	9329780	9325752	9328399	+	Cre12.g540700.t1.1	Cre12.g540700.t1.1		9325329,9326044,9327009,9327415,9327993,9328321	9325824,9326409,9327014,9327582,9328133,9329780	
chr12	9325329	9329780	9325752	9328399	+	Cre12.g540700.t2.1	Cre12.g540700.t2.1		9325329,9326044,9327415,9327993,9328321	9325824,9326409,9327582,9328133,9329780	
chr12	9321485	9325209	9321975	9324992	-	Cre12.g540750.t1.1	Cre12.g540750.t1.1		9324901,9324599,9323840,9323539,9323310,9322369,9321485	9325209,9324686,9324317,9323612,9323337,9322458,9322089	
chr12	9320369	9321470	9320450	9321249	+	Cre12.g540800.t1.2	Cre12.g540800.t1.2		9320369,9320864	9320503,9321470	
chr12	9313839	9320090	9314109	9319642	+	Cre12.g540850.t1.1	Cre12.g540850.t1.1		9313839,9314375,9314686,9315279,9315525,9315780,9316239,9316546,9317423,9317738,9318062,9318514,9318790,9319175,9319575	9314283,9314506,9315005,9315357,9315626,9316044,9316382,9317224,9317560,9317917,9318324,9318570,9318992,9319308,9320090	
chr12	9310313	9313738	9310774	9313630	-	Cre12.g540900.t1.2	Cre12.g540900.t1.2		9313539,9313283,9312974,9312580,9312225,9312008,9310917,9310313	9313738,9313443,9313158,9312718,9312419,9312092,9311835,9310774	
chr12	9310313	9313738	9310774	9313630	-	Cre12.g540900.t2.1	Cre12.g540900.t2.1		9313539,9313283,9312974,9312589,9312225,9312008,9310917,9310313	9313738,9313443,9313158,9312718,9312419,9312092,9311835,9310774	
chr12	9493001	9496900	9493815	9496212	+	Cre12.g540927.t1.1	Cre12.g540927.t1.1		9493001,9493153,9493314,9493464,9493783,9494078,9494318,9494482,9494595,9495423,9495607,9495838,9496097	9493044,9493212,9493344,9493696,9493984,9494220,9494395,9494514,9495302,9495487,9495649,9495962,9496900	
chr12	9306553	9310218	9307040	9309925	-	Cre12.g540950.t1.1	Cre12.g540950.t1.1		9307477,9306553	9310218,9307322	
chr12	9302743	9306498	9303269	9306225	-	Cre12.g541000.t1.2	Cre12.g541000.t1.2		9303729,9302743	9306498,9303542	
chr12	9299243	9302658	9299461	9302467	-	Cre12.g541050.t1.2	Cre12.g541050.t1.2		9299983,9299243	9302658,9299785	
chr12	9295379	9299234	9295620	9298415	+	OTU7	Cre12.g541100.t1.2		9295379,9295856,9296768,9297310,9297845,9298262	9295680,9296489,9296994,9297492,9298000,9299234	Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr12	9290023	9295248	9290504	9294882	-	Cre12.g541150.t1.1	Cre12.g541150.t1.1		9294543,9294141,9293772,9293139,9292825,9292457,9292152,9291931,9291642,9291420,9291061,9290023	9295248,9294260,9293842,9293264,9292900,9292523,9292282,9291969,9291703,9291465,9291117,9290732	
chr12	9287479	9290013	9287672	9288947	+	Cre12.g541200.t1.2	Cre12.g541200.t1.2		9287479,9287988,9288457,9288842	9287681,9288065,9288606,9290013	
chr12	9282599	9287430	9282627	9286896	+	Cre12.g541211.t1.1	Cre12.g541211.t1.1		9282599,9283133,9283419,9283633,9283859,9283977,9284521,9285019,9285142,9285375,9285660,9285905,9286254,9286526,9286896	9282802,9283165,9283469,9283671,9283882,9284393,9284609,9285059,9285234,9285595,9285730,9286106,9286358,9286819,9287430	
chr12	9282599	9287430	9282627	9286896	+	Cre12.g541211.t2.1	Cre12.g541211.t2.1		9282599,9283133,9283419,9283633,9283859,9283977,9284521,9285019,9285142,9285378,9285660,9285905,9286254,9286526,9286896	9282802,9283165,9283469,9283671,9283882,9284393,9284609,9285059,9285234,9285595,9285730,9286106,9286358,9286819,9287430	
chr12	9282599	9287430	9282627	9286896	+	Cre12.g541211.t3.1	Cre12.g541211.t3.1		9282599,9283133,9283419,9283633,9283859,9283977,9284521,9285019,9285142,9285375,9285660,9285905,9286254,9286526,9286896	9282802,9283165,9283469,9283644,9283882,9284393,9284609,9285059,9285234,9285595,9285730,9286106,9286358,9286819,9287430	
chr12	9274279	9279443	9274506	9277881	+	NAR1.5	Cre12.g541250.t1.2		9274279,9274804,9275198,9275584,9276089,9276330,9276930,9277391,9277776	9274618,9274994,9275279,9275692,9276168,9276445,9277007,9277540,9279443	putative nitrite transporter, possibly chloroplastic [PMID: 11912227; accession AY612641]
chr12	9280663	9282448	9281209	9282126	-	Cre12.g541252.t1.1	Cre12.g541252.t1.1		9281871,9281344,9280663	9282448,9281433,9281209	
chr12	9266696	9273548	9267682	9273305	-	Cre12.g541300.t1.2	Cre12.g541300.t1.2		9273480,9273126,9272957,9272441,9271882,9271597,9271182,9270571,9270155,9269121,9268022,9266696	9273548,9273351,9273057,9272628,9272230,9271649,9271338,9270943,9270227,9269993,9268684,9267811	
chr12	9260511	9266318	9260711	9266216	-	Cre12.g541350.t1.1	Cre12.g541350.t1.1		9266159,9266037,9265837,9265541,9265251,9264978,9264639,9264028,9263793,9263369,9263134,9262328,9262060,9261536,9261198,9260511	9266318,9266084,9265938,9265618,9265395,9265054,9264764,9264327,9263846,9263608,9263234,9262645,9262150,9261646,9261280,9260922	
chr12	9497261	9504646	9497526	9503528	+	LIP1	Cre12.g541352.t1.1		9497261,9498019,9498367,9498513,9498863,9499170,9499880,9500165,9502371,9502695,9502988,9503423	9497893,9498261,9498451,9498747,9498992,9499442,9499996,9502158,9502553,9502788,9503205,9504646	
chr12	9497261	9504646	9497526	9503528	+	LIP1	Cre12.g541352.t2.1		9497261,9498022,9498367,9498513,9498863,9499170,9499880,9500165,9502371,9502695,9502988,9503423	9497893,9498261,9498451,9498747,9498992,9499442,9499996,9502158,9502553,9502788,9503205,9504646	
chr12	9255853	9260458	9257207	9260189	-	Cre12.g541400.t1.2	Cre12.g541400.t1.2		9260066,9259640,9259301,9259054,9258809,9258294,9258010,9257720,9255853	9260458,9259667,9259406,9259082,9258900,9258350,9258121,9257802,9257282	
chr12	9252706	9255798	9253118	9255779	-	Cre12.g541450.t1.2	Cre12.g541450.t1.2		9255650,9255365,9254952,9254675,9254336,9254090,9253733,9252706	9255798,9255419,9255056,9254684,9254420,9254152,9253850,9253342	
chr12	9246525	9252578	9248680	9251782	-	Cre12.g541500.t1.1	Cre12.g541500.t1.1		9250951,9250694,9250209,9246525	9252578,9250776,9250317,9249889	null-allele mutant was isolated (PMID 29743196)
chr12	9240690	9245058	9241194	9244657	-	Cre12.g541550.t1.2	Cre12.g541550.t1.2		9244540,9244241,9243617,9242993,9242616,9242366,9241867,9240690	9245058,9244302,9243717,9243075,9242681,9242459,9241943,9241500	
chr12	9236863	9240643	9237511	9240531	-	Cre12.g541600.t1.2	Cre12.g541600.t1.2		9240417,9239990,9239732,9239316,9238942,9238735,9238407,9237928,9236863	9240643,9240121,9239762,9239398,9238973,9238774,9238463,9238101,9237616	
chr12	9231969	9236860	9232591	9236322	+	Cre12.g541650.t2.1	Cre12.g541650.t2.1		9231969,9232191,9232529,9232948,9233491,9233778,9234152,9234519,9235785	9232132,9232284,9232624,9233240,9233629,9233906,9234299,9235522,9236860	
chr12	9231739	9236860	9232591	9236322	+	Cre12.g541650.t1.2	Cre12.g541650.t1.2		9231739,9232191,9232529,9232948,9233491,9233778,9234152,9234519,9235785	9232132,9232284,9232624,9233240,9233629,9233906,9234299,9235522,9236860	
chr12	9225253	9231548	9225563	9230862	-	OPR54	Cre12.g541700.t1.2		9229945,9229471,9228934,9228555,9228235,9227772,9227169,9225253	9231548,9229654,9229179,9228668,9228363,9227885,9227578,9226848	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 159 codons at 5'-end: MYSFLQQNGMAALRIQTDGTGYITSRDVWAWQLDRRRVRNAAGVATQASQKAGRAPSGLNSSMAARSDGARRLPTSDRPLPADSHSHPAAARAQQPRPKPAGASASTQPVSQSSAPPATRARNSILHPRTSSSTLPSRSSPGPPLNAVAHTPNTPVTTP
chr12	9215419	9223793	9215564	9223369	+	ZPD1	Cre12.g541750.t1.1		9215419,9217716,9218101,9218415,9218926,9219308,9219975,9220328,9220772,9221215,9221720,9222115,9222648,9223345	9217379,9217901,9218176,9218598,9218977,9219415,9220150,9220497,9220929,9221311,9221849,9222202,9222746,9223793	
chr12	9506231	9509532	9506345	9508954	+	CGL95	Cre12.g541777.t1.1		9506231,9506690,9507446,9508321	9506581,9506969,9507862,9509532	
chr12	9206573	9215318	9208556	9215128	-	Cre12.g541800.t1.2	Cre12.g541800.t1.2		9214944,9214775,9214491,9213956,9213662,9213353,9212947,9212439,9212017,9211721,9211113,9210716,9210047,9209334,9209031,9206573	9215318,9214821,9214587,9214022,9213720,9213445,9213019,9212703,9212093,9211787,9211173,9210833,9210589,9209782,9209194,9208841	
chr12	9201429	9203306	9202340	9203262	-	Cre12.g541850.t1.2	Cre12.g541850.t1.2		9203205,9202773,9201429	9203306,9202932,9202426	
chr12	9204379	9206493	9204595	9205561	+	Cre12.g541851.t1.1	Cre12.g541851.t1.1		9204379,9205168,9205480	9204766,9205269,9206493	
chr12	9192560	9201378	9192790	9200485	-	Cre12.g541904.t1.2	Cre12.g541904.t1.2		9201151,9200224,9199438,9199018,9198457,9198101,9197666,9196468,9196196,9195533,9195017,9194471,9193879,9193217,9192560	9201378,9200520,9199938,9199134,9198803,9198214,9197779,9196576,9196258,9195694,9195124,9194536,9194199,9193498,9192967	
chr12	9187043	9192398	9188054	9192119	-	Cre12.g541950.t1.2	Cre12.g541950.t1.2		9192106,9191841,9191529,9191137,9190659,9190351,9189821,9189422,9189076,9188521,9187043	9192398,9191909,9191570,9191178,9190753,9190521,9190180,9189637,9189263,9188921,9188314	
chr12	9187043	9192398	9188054	9192119	-	Cre12.g541950.t2.1	Cre12.g541950.t2.1		9192106,9191841,9191529,9191137,9190659,9190351,9189821,9189422,9189076,9188521,9187043	9192398,9191909,9191570,9191178,9190753,9190521,9190180,9189637,9189263,9188918,9188314	
chr12	9183001	9186335	9183909	9186203	-	Cre12.g542000.t1.1	Cre12.g542000.t1.1		9186069,9185810,9185565,9184133,9183001	9186335,9185895,9185650,9184222,9183978	
chr12	9183001	9186325	9183909	9186092	-	Cre12.g542000.t2.1	Cre12.g542000.t2.1		9186069,9185810,9185565,9184133,9183001	9186325,9185895,9185650,9184222,9183978	
chr12	9181930	9182845	9181962	9182761	-	Cre12.g542050.t1.2	Cre12.g542050.t1.2		9182711,9181930	9182845,9182356	
chr12	9174916	9181927	9174949	9180544	+	Cre12.g542100.t1.2	Cre12.g542100.t1.2		9174916,9175253,9175492,9175844,9176287,9176554,9177137,9177646,9178008,9178293,9178521,9178765,9179489,9180077,9180469	9175124,9175299,9175588,9175910,9176345,9176728,9177401,9177725,9178074,9178350,9178638,9179307,9179937,9180240,9181927	
chr12	9172926	9174867	9173149	9174362	+	Cre12.g542150.t1.2	Cre12.g542150.t1.2		9172926,9173599,9173972,9174270	9173209,9173669,9174063,9174867	
chr12	9170370	9172795	9171073	9172389	-	Cre12.g542200.t1.1	Cre12.g542200.t1.1		9172488,9172239,9172014,9171573,9171193,9170370	9172795,9172399,9172103,9171828,9171391,9171073	
chr12	9510071	9513097	9510403	9512989	-	Cre12.g542202.t1.1	Cre12.g542202.t1.1		9512891,9512549,9512329,9512197,9511926,9511364,9511151,9511002,9510774,9510071	9513097,9512664,9512415,9512222,9512066,9511502,9511221,9511038,9510869,9510570	
chr12	9167628	9170277	9167767	9169720	+	TUB1	Cre12.g542250.t1.1		9167628,9167918,9168423,9168782	9167791,9168062,9168647,9170277	GI:167458; major constituent of microtubules [PMID: 3460413, PMID: 6098820]; it binds one mole of GTP that is hydrolyzed and alters dynamic instability of the microtubule cytoskeleton
chr12	9161766	9165628	9162098	9164447	+	GLYK1	Cre12.g542300.t1.2		9161766,9162763,9163109,9163641,9164213	9162535,9162856,9163327,9163946,9165628	related to D-glycerate 3-kinase (GLYK) [PMID: 15980259]
chr12	9159294	9161650	9160167	9161545	-	Cre12.g542350.t1.2	Cre12.g542350.t1.2		9161494,9161152,9160836,9160522,9159294	9161650,9161295,9160913,9160653,9160245	
chr12	9156090	9159245	9156159	9158942	-	Cre12.g542400.t1.1	Cre12.g542400.t1.1		9158862,9158681,9158313,9158025,9157713,9156652,9156090	9159245,9158771,9158432,9158123,9157793,9157454,9156400	
chr12	9146589	9155605	9147181	9155253	-	Cre12.g542450.t1.2	Cre12.g542450.t1.2		9155019,9154140,9153688,9153190,9152842,9152410,9151805,9151203,9150780,9150458,9149943,9149540,9149181,9148885,9148528,9148347,9148102,9147784,9146589	9155605,9154799,9153832,9153488,9152955,9152535,9151909,9151559,9150913,9150614,9150075,9149661,9149371,9148972,9148617,9148394,9148163,9147907,9147529	AAA+ domain
chr12	9143480	9146535	9144951	9146222	-	MOC1	Cre12.g542500.t1.2		9146150,9145889,9145702,9145252,9143480	9146535,9145966,9145752,9145442,9145033	Putative mitochondrial transcription termination factor (mTtf-like protein; contains two possible mTerf-domains) [PMID: 15448140]
chr12	9132350	9137615	9132925	9137382	-	Cre12.g542550.t1.1	Cre12.g542550.t1.1		9137354,9137072,9136289,9136048,9135806,9134768,9134259,9133943,9132350	9137615,9137120,9136410,9136102,9135848,9135616,9134320,9134058,9133524	
chr12	9125050	9132295	9125582	9132205	-	Cre12.g542569.t1.2	Cre12.g542569.t1.2		9131982,9131704,9131448,9131180,9130463,9130128,9129643,9129193,9128826,9128452,9128084,9125050	9132295,9131761,9131572,9131249,9130668,9130239,9129727,9129296,9128971,9128516,9128314,9127808	
chr12	9125050	9132295	9125582	9132205	-	Cre12.g542569.t2.1	Cre12.g542569.t2.1		9131982,9131704,9131501,9130463,9130128,9129643,9129193,9128826,9128452,9128084,9125050	9132295,9131761,9131572,9130668,9130239,9129727,9129296,9128971,9128516,9128314,9127808	
chr12	9121802	9123865	9123141	9123808	-	Cre12.g542600.t1.2	Cre12.g542600.t1.2		9123730,9121802	9123865,9123591	
chr12	9123920	9124855	9124495	9124822	-	CSB48	Cre12.g542601.t1.1		9124738,9123920	9124855,9124618	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	9513145	9514980	9513448	9514897	-	Cre12.g542627.t1.1	Cre12.g542627.t1.1		9514846,9513145	9514980,9513940	
chr12	9114976	9121797	9115024	9121160	+	Cre12.g542650.t1.1	Cre12.g542650.t1.1		9114976,9115380,9115824,9116335,9116519,9116940,9117293,9117707,9118017,9118273,9118468,9118907,9119099,9119498,9119882,9120287,9120582,9120838	9115134,9115497,9116139,9116368,9116656,9117010,9117457,9117792,9118113,9118334,9118723,9118986,9119155,9119620,9120033,9120370,9120698,9121797	
chr12	9114976	9121797	9115024	9121160	+	Cre12.g542650.t2.1	Cre12.g542650.t2.1		9114976,9115380,9115824,9116335,9116519,9116943,9117293,9117707,9118017,9118273,9118468,9118907,9119099,9119498,9119882,9120287,9120582,9120838	9115134,9115497,9116139,9116368,9116656,9117010,9117457,9117792,9118113,9118334,9118723,9118986,9119155,9119620,9120033,9120370,9120698,9121797	
chr12	9106646	9114927	9106983	9114103	+	FAP373	Cre12.g542700.t1.2		9106646,9107360,9107611,9109303,9109563,9111033,9111407,9111944,9112611,9112945	9107202,9107446,9109068,9109422,9110864,9111242,9111667,9112179,9112770,9114927	Found in Cr and Volvox but not strongly conserved elsewhere
chr12	9101591	9106457	9101774	9104788	+	Cre12.g542750.t1.1	Cre12.g542750.t1.1		9101591,9102101,9103388,9103876,9104135,9104506	9101923,9103244,9103744,9103982,9104351,9106457	
chr12	9089220	9101435	9090039	9101035	-	RPC2	Cre12.g542800.t1.2		9100822,9100234,9099947,9099380,9099023,9098712,9098201,9097674,9097234,9096890,9096649,9096375,9095974,9095711,9095313,9094861,9094577,9094148,9093847,9093472,9092966,9092445,9092055,9091630,9091245,9090863,9090502,9089220	9101435,9100355,9099998,9099546,9099119,9098875,9098478,9097919,9097337,9097006,9096726,9096495,9096139,9095762,9095424,9094966,9094679,9094270,9093908,9093570,9093093,9092526,9092160,9091800,9091346,9091032,9090655,9090225	
chr12	9084980	9089133	9085583	9089060	-	ARD1	Cre12.g542850.t1.2		9089015,9088772,9088488,9087958,9087492,9086399,9084980	9089133,9088848,9088623,9088072,9087616,9087236,9085583	Aci-reductone dioxygenase involved in the methionine salvage pathway; homologue of human MTCBP-1 and yeast ADI1
chr12	9073206	9084971	9073484	9083320	+	Cre12.g542900.t1.1	Cre12.g542900.t1.1		9073206,9073798,9074231,9074877,9075151,9075521,9076101,9076559,9077027,9077295,9078169,9078429,9078935,9079514,9081250,9081579,9082171	9073674,9074000,9074709,9074990,9075286,9075676,9076319,9076857,9077156,9078051,9078248,9078686,9079328,9081055,9081374,9082046,9084971	
chr12	9068010	9072475	9068578	9072305	-	CGL137	Cre12.g542950.t1.1		9072287,9072040,9071842,9071542,9071231,9070992,9070585,9070319,9069866,9069459,9069174,9068952,9068010	9072475,9072157,9071931,9071766,9071322,9071030,9070775,9070421,9070017,9069573,9069236,9069029,9068698	
chr12	9064577	9067955	9065231	9067684	-	Cre12.g543000.t1.1	Cre12.g543000.t1.1		9067912,9067668,9067357,9067151,9066833,9066408,9065957,9065643,9064577	9067955,9067724,9067416,9067168,9066925,9066496,9066085,9065711,9065459	
chr12	9062620	9064515	9063093	9064395	-	Cre12.g543050.t1.2	Cre12.g543050.t1.2		9064284,9064098,9063772,9062620	9064515,9064183,9063885,9063136	
chr12	9515081	9518927	9515112	9518062	+	Cre12.g543052.t1.1	Cre12.g543052.t1.1		9515081,9515297,9515466,9515812,9516073,9516408,9516778,9516976,9517206,9517941	9515223,9515343,9515609,9515873,9516179,9516619,9516861,9517060,9517732,9518927	
chr12	9059726	9062617	9059837	9062576	+	Cre12.g543100.t1.2	Cre12.g543100.t1.2		9059726,9060053,9060309,9060586,9060761,9061010,9061460	9059932,9060163,9060435,9060636,9060862,9061105,9062617	
chr12	9033056	9043437	9034631	9042477	+	Cre12.g543300.t1.1	Cre12.g543300.t1.1		9033056,9033510,9033924,9034123,9034338,9039148,9040540,9040898,9041246	9033334,9033602,9034016,9034236,9039000,9040437,9040745,9041085,9043437	
chr12	9043526	9050456	9043757	9049989	+	CSV11	Cre12.g543301.t1.1		9043526,9044109,9044365,9045027,9045424,9045633	9043812,9044176,9044841,9045269,9045474,9050456	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr12	9050536	9052428	9050797	9052127	+	Cre12.g543302.t1.1	Cre12.g543302.t1.1		9050536,9050901,9051094,9051409,9051694,9052064	9050805,9050949,9051237,9051450,9051831,9052428	
chr12	9052780	9059627	9053538	9059369	-	CGLD6	Cre12.g543303.t1.1		9057879,9057150,9056710,9054425,9052780	9059627,9057726,9056972,9054889,9054115	Conserved in the Green Lineage and Diatoms
chr12	9055050	9059627	9056550	9059369	-	CGLD6	Cre12.g543303.t3.1		9057879,9057150,9056710,9055050	9059627,9057726,9056972,9056590	Conserved in the Green Lineage and Diatoms
chr12	9052780	9054995	9053538	9054957	-	CGLD6	Cre12.g543303.t2.1		9054952,9054425,9052780	9054995,9054889,9054115	Conserved in the Green Lineage and Diatoms
chr12	9029769	9032865	9030057	9032753	-	FDH2	Cre12.g543350.t1.1		9032612,9032327,9031984,9031673,9031409,9031224,9030688,9030375,9029769	9032865,9032347,9032017,9031753,9031507,9031276,9031076,9030561,9030201	Formaldehyde dehydrogenase, glutathione-dependent, zinc-containing alcohol dehydrogenase class III; found in the flagellar proteome [PMID: 15998802]; very similar to nearby FDH1
chr12	9029769	9032874	9030057	9032753	-	FDH2	Cre12.g543350.t2.1		9032627,9032327,9031984,9031673,9031409,9031224,9030688,9030375,9029769	9032874,9032347,9032017,9031753,9031507,9031276,9031076,9030561,9030201	Formaldehyde dehydrogenase, glutathione-dependent, zinc-containing alcohol dehydrogenase class III; found in the flagellar proteome [PMID: 15998802]; very similar to nearby FDH1
chr12	9029769	9032865	9030057	9032753	-	FDH2	Cre12.g543350.t3.1		9032612,9031984,9031673,9031409,9031224,9030688,9030375,9029769	9032865,9032017,9031753,9031507,9031276,9031076,9030561,9030201	Formaldehyde dehydrogenase, glutathione-dependent, zinc-containing alcohol dehydrogenase class III; found in the flagellar proteome [PMID: 15998802]; very similar to nearby FDH1
chr12	9026224	9029715	9026973	9029539	-	FDH1	Cre12.g543400.t1.2		9029523,9029346,9029039,9028753,9028554,9028290,9028105,9027569,9027253,9026224	9029715,9029458,9029059,9028786,9028634,9028388,9028157,9027957,9027439,9027117	Formaldehyde dehydrogenase, glutathione-dependent, zinc-containing alcohol dehydrogenase class III; found in the flagellar proteome [PMID: 15998802]; very similar to nearby FDH2
chr12	9024656	9026095	9025003	9025397	+	RBX1	Cre12.g543450.t1.2		9024656	9026095	
chr12	9518935	9522180	9519226	9521954	-	Cre12.g543477.t1.1	Cre12.g543477.t1.1		9521659,9521280,9520703,9520356,9519928,9518935	9522180,9521529,9521083,9520504,9520187,9519790	
chr12	9016846	9020347	9016987	9019473	+	FAP364	Cre12.g543500.t1.2		9016846,9017362,9017676,9017971,9018152,9018375,9018589,9018803,9019041,9019342	9017065,9017448,9017781,9018008,9018235,9018422,9018663,9018842,9019148,9020347	Found in Cr and Volvox but not strongly conserved elsewhere
chr12	9014300	9016715	9014780	9016390	-	Cre12.g543550.t1.1	Cre12.g543550.t1.1		9016367,9016024,9015641,9015315,9014300	9016715,9016258,9015886,9015452,9015131	
chr12	9009942	9011865	9010452	9011401	+	Cre12.g543650.t1.1	Cre12.g543650.t1.1		9009942,9010411,9010669	9010174,9010536,9011865	
chr12	9004460	9009902	9005625	9009179	-	Cre12.g543700.t1.1	Cre12.g543700.t1.1		9009654,9008873,9007892,9006044,9005870,9004460	9009902,9009570,9008736,9007829,9005971,9005733	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain. This domain is found at the C-terminus of a large number of transposase proteins.
chr12	8997927	9000022	8998068	8999951	-	Cre12.g543800.t1.2	Cre12.g543800.t1.2		8999854,8999515,8999205,8998780,8998432,8997927	9000022,8999759,8999261,8998924,8998589,8998215	
chr12	8999047	9000022	8999272	8999951	-	Cre12.g543800.t2.1	Cre12.g543800.t2.1		8999854,8999515,8999047	9000022,8999759,8999323	
chr12	8985343	8997914	8985568	8997286	+	Cre12.g543850.t1.1	Cre12.g543850.t1.1		8985343,8985965,8986471,8986998,8988699,8991280,8991592,8991837,8992153,8994275,8994482,8994989,8996494	8985649,8986198,8986829,8988593,8991131,8991487,8991632,8992016,8994133,8994368,8994744,8996308,8997914	
chr12	8982017	8985232	8982826	8985168	-	PTP6	Cre12.g543900.t1.1		8985048,8984598,8984335,8983954,8983484,8983192,8982017	8985232,8984762,8984451,8984181,8983693,8983293,8983015	
chr12	9522228	9529600	9522511	9529493	-	Cre12.g543902.t1.1	Cre12.g543902.t1.1		9529423,9529200,9528926,9528567,9528324,9527940,9527114,9526828,9525280,9525037,9524051,9523754,9523445,9523109,9522790,9522228	9529600,9529267,9529058,9528784,9528408,9528164,9527258,9526930,9525391,9525178,9524723,9523815,9523544,9523261,9522885,9522589	
chr12	8979628	8981562	8979779	8981248	-	Cre12.g543950.t2.1	Cre12.g543950.t2.1		8981217,8980899,8980464,8980068,8979628	8981562,8981062,8980709,8980276,8979897	
chr12	8978637	8981562	8979779	8981248	-	Cre12.g543950.t1.2	Cre12.g543950.t1.2		8981217,8980899,8980464,8980068,8978637	8981562,8981062,8980709,8980276,8979897	
chr12	8974403	8978084	8974651	8977483	+	RSP5	Cre12.g544000.t1.2		8974403,8974893,8975169,8975457,8975827,8976146,8976663,8976991	8974813,8974994,8975282,8975615,8975948,8976431,8976791,8978084	A subunit in the radial spoke stalk, putative aldo/keto reductase [PMID: 16507594; GI:83284709
chr12	8968003	8974139	8968589	8973039	+	Cre12.g544050.t1.1	Cre12.g544050.t1.1		8968003,8968730,8969041,8969437,8969639,8969974,8970215,8970488,8970844,8971052,8971258,8971752,8973004	8968652,8968802,8969170,8969554,8969773,8970072,8970299,8970621,8970898,8971110,8971353,8972181,8974139	
chr12	8927617	8932312	8928177	8931977	-	Cre12.g544100.t1.1	Cre12.g544100.t1.1		8931878,8931669,8931345,8930970,8930716,8930123,8929727,8929409,8929189,8928863,8928573,8927617	8932312,8931749,8931491,8931077,8930793,8930353,8929820,8929594,8929235,8929021,8928701,8928330	
chr12	8932903	8945624	8933363	8944037	+	Cre12.g544109.t1.1	Cre12.g544109.t1.1		8932903,8933504,8933815,8934211,8934413,8934746,8934987,8943482,8943638	8933426,8933576,8933944,8934328,8934547,8934844,8935071,8943522,8945624	
chr12	8945627	8948212	8945752	8948065	-	Cre12.g544110.t1.1	Cre12.g544110.t1.1		8947862,8947463,8945627	8948212,8947532,8947057	
chr12	8948313	8953674	8948372	8953473	+	CSB49	Cre12.g544111.t1.1		8948313,8948786,8949100,8949386,8949787,8950179,8950553,8951460,8952880,8953124,8953350	8948381,8948854,8949138,8949433,8949844,8950235,8950638,8952671,8953005,8953234,8953674	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	8953677	8957572	8954198	8957274	-	Cre12.g544112.t1.1	Cre12.g544112.t1.1		8957244,8956865,8953677	8957572,8957086,8956730	null-allele passenger mutation was isolated (PMID 29743196)
chr12	8957627	8959942	8957891	8959740	-	Cre12.g544113.t1.1	Cre12.g544113.t1.1		8959483,8959119,8958698,8958474,8958258,8957627	8959942,8959313,8958907,8958520,8958300,8958090	
chr12	8959997	8962742	8960622	8962682	-	CYN20-6	Cre12.g544114.t1.1		8962470,8962171,8961905,8961724,8961258,8960876,8959997	8962742,8962310,8961975,8961776,8961391,8960951,8960668	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; similar to AtCYP20-2 (TLP2); possibly directed to chloroplast thylakoid lumen; linked to CYN20-2 and CYN13
chr12	8962797	8967902	8963401	8966919	-	Cre12.g544115.t1.1	Cre12.g544115.t1.1		8967104,8966895,8966571,8966196,8965942,8965340,8964944,8964626,8964406,8964080,8963797,8962797	8967902,8966975,8966717,8966303,8966019,8965573,8965037,8964811,8964452,8964238,8963925,8963554	
chr12	8924647	8927568	8925483	8927520	-	CYN20-2	Cre12.g544150.t1.2		8927308,8927012,8926764,8926583,8926117,8925737,8924647	8927568,8927151,8926834,8926635,8926250,8925812,8925529	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; similar to AtCYP20-2 (TLP2); possibly directed to chloroplast thylakoid lumen; linked to CYN20-6 and CYN13
chr12	8922319	8924592	8922703	8924571	-	CYN13	Cre12.g544200.t1.1		8924559,8924319,8923956,8923594,8923313,8923097,8922319	8924592,8924482,8924150,8923743,8923359,8923139,8922929	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; similar to AtCYP20-2 (TLP2); possibly directed to chloroplast thylakoid lumen; most similar to fungal cyclophilinslinked to CYN20-6 and CYN20-2
chr12	8918502	8922272	8919100	8922127	-	Cre12.g544250.t1.2	Cre12.g544250.t1.2		8922097,8921724,8918502	8922272,8921945,8921590	
chr12	8915513	8918348	8915562	8918207	+	Cre12.g544300.t1.2	Cre12.g544300.t1.2		8915513,8915974,8916403,8916665,8917066,8917464,8917836,8918153	8915571,8916042,8916441,8916712,8917123,8917520,8917921,8918348	
chr12	8915513	8918494	8915562	8918207	+	Cre12.g544300.t2.1	Cre12.g544300.t2.1		8915513,8915974,8916403,8916665,8917066,8917464,8917836,8918153	8915571,8916042,8916441,8916712,8917123,8917520,8917921,8918494	
chr12	8916943	8918494	8916995	8918207	+	Cre12.g544300.t3.1	Cre12.g544300.t3.1		8916943,8917066,8917464,8917836,8918153	8917001,8917123,8917520,8917921,8918494	
chr12	9529752	9532284	9530150	9532026	+	Cre12.g544327.t1.1	Cre12.g544327.t1.1		9529752,9530128,9531044,9531813	9530005,9530897,9531676,9532284	
chr12	9529752	9532554	9530150	9532026	+	Cre12.g544327.t2.1	Cre12.g544327.t2.1		9529752,9530128,9531044,9531813	9530005,9530897,9531676,9532554	
chr12	9529752	9532554	9530420	9532026	+	Cre12.g544327.t3.1	Cre12.g544327.t3.1		9529752,9530338,9531044,9531813	9530005,9530897,9531676,9532554	
chr12	8905993	8912632	8906276	8911273	+	Cre12.g544400.t1.2	Cre12.g544400.t1.2		8905993,8906492,8906739,8906971,8907393,8907790,8908145,8908631,8909828,8910311,8910874	8906353,8906548,8906766,8907096,8907443,8907978,8908384,8909616,8910182,8910562,8912632	
chr12	8912657	8915402	8912829	8915243	-	Cre12.g544401.t1.1	Cre12.g544401.t1.1		8915040,8914638,8912657	8915402,8914707,8914221	
chr12	8895529	8901892	8897691	8901837	-	CSE20	Cre12.g544450.t1.2		8901464,8901144,8900769,8900376,8899974,8899141,8898739,8898399,8895529	8901892,8901291,8900844,8900493,8900197,8899843,8898920,8898566,8898054	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr12	8886504	8892575	8886829	8891610	+	Cre12.g544550.t1.1	Cre12.g544550.t1.1		8886504,8887020,8887234,8887488,8887863,8888244	8886880,8887067,8887346,8887643,8888040,8892575	
chr12	8892578	8894333	8893729	8893898	-	Cre12.g544551.t1.1	Cre12.g544551.t1.1		8894081,8892578	8894333,8893932	
chr12	8881948	8886363	8882529	8886058	-	Cre12.g544600.t1.2	Cre12.g544600.t1.2		8885905,8885477,8884811,8884465,8884111,8883807,8883575,8883233,8883007,8881948	8886363,8885770,8885128,8884599,8884311,8883956,8883639,8883362,8883054,8882796	
chr12	8879428	8881853	8879853	8881578	-	Cre12.g544650.t1.1	Cre12.g544650.t1.1		8880990,8880388,8879428	8881853,8880759,8880297	
chr12	8874103	8879363	8874563	8879227	-	Cre12.g544662.t1.2	Cre12.g544662.t1.2		8878832,8878273,8877764,8877487,8877122,8875864,8875339,8874896,8874103	8879363,8878432,8877886,8877565,8877279,8876925,8875449,8875015,8874647	
chr12	8867072	8873673	8868400	8873311	-	PUF3	Cre12.g544700.t1.1		8873276,8873099,8872544,8872290,8871993,8871626,8871255,8870555,8870171,8869765,8869269,8868787,8867072	8873673,8873201,8872793,8872373,8872163,8871865,8871374,8871113,8870327,8869908,8869499,8869011,8868556	contains pumilio-family RNA binding domains (PUF). Puf protein family thought to repress gene expression by affecting mRNA translation or stability.
chr12	8850296	8866643	8851087	8866219	-	Cre12.g544750.t1.1	Cre12.g544750.t1.1		8866186,8865859,8863506,8863257,8862881,8862485,8861986,8861721,8861393,8860973,8860268,8859832,8859145,8858780,8858423,8854204,8852033,8851456,8850296	8866643,8866017,8865689,8863328,8863069,8862736,8862090,8861776,8861525,8861034,8860400,8859909,8859513,8858973,8858513,8858133,8854080,8851840,8851234	
chr12	9532601	9535413	9532719	9534933	+	Cre12.g544752.t1.1	Cre12.g544752.t1.1		9532601,9532932,9533199,9533510,9533929,9534559,9534822	9532781,9533067,9533279,9533656,9534360,9534657,9535413	
chr12	8848504	8849165	8848609	8848775	+	Cre12.g544800.t1.2	Cre12.g544800.t1.2		8848504	8849165	
chr12	8849168	8850063	8849343	8850034	-	Cre12.g544802.t1.1	Cre12.g544802.t1.1		8849966,8849543,8849168	8850063,8849745,8849390	
chr12	8846238	8847613	8846754	8847483	-	Cre12.g544850.t1.2	Cre12.g544850.t1.2		8847348,8846238	8847613,8847015	
chr12	8842277	8846163	8843042	8846033	-	Cre12.g544900.t1.2	Cre12.g544900.t1.2		8845796,8844848,8844380,8843917,8843557,8842277	8846163,8844943,8844541,8844030,8843623,8843221	
chr12	8840568	8841503	8840975	8841297	-	Cre12.g544950.t1.2	Cre12.g544950.t1.2		8840568	8841503	
chr12	8841624	8842224	8841653	8841819	+	Cre12.g544952.t1.1	Cre12.g544952.t1.1		8841624	8842224	
chr12	8836694	8840565	8836823	8839961	+	ARP7	Cre12.g545000.t1.2		8836694,8838007,8838397,8838779,8839591,8839961	8837696,8838153,8838456,8839416,8839699,8840565	ChromDB ARP3402; similar to the Arabidopsis ARP7 protein which is localized predominantly to the nucleus during interphase; may be involved in chromatin remodeling
chr12	8817794	8821235	8817854	8820775	+	Cre12.g545100.t1.1	Cre12.g545100.t1.1		8817794,8818171,8820118	8817884,8819988,8821235	
chr12	8821284	8836535	8821324	8835374	+	XDH1	Cre12.g545101.t1.1		8821284,8821688,8822136,8822712,8823507,8824010,8824442,8824928,8825221,8825881,8826351,8826764,8827066,8827385,8827856,8828230,8828434,8828730,8828989,8829505,8830011,8830406,8830788,8831467,8831905,8832302,8832710,8833353,8833648,8834040,8834893,8835355	8821436,8821852,8822313,8823130,8823682,8824146,8824618,8825055,8825375,8826052,8826421,8826832,8827191,8827501,8828002,8828295,8828526,8828798,8829127,8829622,8830170,8830489,8830964,8831562,8831970,8832405,8832896,8833418,8833712,8834238,8835026,8836535	Includes: Xanthine dehydrogenase (XD); Xanthine oxidase (XO) (Xanthine oxidoreductase)
chr12	8810124	8817745	8810834	8816947	+	Cre12.g545150.t1.1	Cre12.g545150.t1.1		8810124,8810802,8811962,8812277,8812540,8812917,8813362,8813842,8814149,8814398,8814612,8815293,8816206	8810334,8811912,8812077,8812359,8812675,8813126,8813581,8813942,8814226,8814469,8814971,8815982,8817745	
chr12	9535415	9540380	9536207	9538827	-	Cre12.g545177.t1.1	Cre12.g545177.t1.1		9539670,9538762,9538546,9538376,9537962,9537667,9537362,9537059,9536555,9535415	9540380,9538844,9538691,9538460,9538166,9537717,9537402,9537166,9536606,9536291	
chr12	8795314	8799232	8795716	8799192	+	Cre12.g545250.t1.1	Cre12.g545250.t1.1		8795314,8796243,8796624,8798556	8795975,8796337,8798426,8799232	
chr12	8789314	8795225	8789515	8794802	+	Cre12.g545300.t1.2	Cre12.g545300.t1.2		8789314,8789772,8790087,8790367,8790745,8791186,8791671,8791980,8792229,8792443,8793136,8794046	8789594,8789887,8790169,8790502,8790954,8791402,8791771,8792057,8792300,8792826,8793822,8795225	null-allele mutant was isolated (PMID 29743196)
chr12	8783964	8785145	8784032	8784874	+	Cre12.g545400.t1.2	Cre12.g545400.t1.2		8783964,8784817	8784341,8785145	
chr12	8785834	8789205	8786063	8789001	+	Cre12.g545401.t1.1	Cre12.g545401.t1.1		8785834,8786591,8786975,8787250,8787556	8786260,8786681,8787066,8787371,8789205	
chr12	8780534	8783605	8780912	8783198	+	Cre12.g545450.t1.2	Cre12.g545450.t1.2		8780534,8781332,8781983,8782445,8783018	8781076,8781413,8782054,8782744,8783605	
chr12	8772378	8780353	8772967	8780129	-	Cre12.g545500.t1.1	Cre12.g545500.t1.1		8779961,8779779,8779637,8779416,8779070,8778737,8778418,8778036,8777720,8776584,8772378	8780353,8779885,8779675,8779452,8779120,8778799,8778466,8778106,8777817,8777504,8776319	
chr12	8769444	8772376	8769967	8772012	+	Cre12.g545550.t1.2	Cre12.g545550.t1.2		8769444,8769921,8770281,8770594,8770962,8771573	8769766,8770090,8770439,8770677,8771344,8772376	
chr12	8769654	8772375	8769967	8772012	+	Cre12.g545550.t2.1	Cre12.g545550.t2.1		8769654,8769921,8770281,8770594,8770962,8771573	8769766,8770090,8770439,8770677,8771344,8772375	
chr12	8766788	8769553	8767707	8769315	-	Cre12.g545600.t1.1	Cre12.g545600.t1.1		8769225,8768967,8768657,8768273,8766788	8769553,8769071,8768753,8768421,8767932	
chr12	8766788	8769351	8767707	8769315	-	Cre12.g545600.t2.1	Cre12.g545600.t2.1		8769225,8768967,8768657,8768273,8766788	8769351,8769071,8768753,8768421,8767932	
chr12	9541228	9545009	9541701	9543735	+	Cre12.g545602.t1.1	Cre12.g545602.t1.1		9541228,9542618,9543345	9541786,9542715,9545009	
chr12	8764602	8766733	8766092	8766677	-	Cre12.g545619.t1.2	Cre12.g545619.t1.2		8766649,8764602	8766733,8766418	
chr12	8760578	8762468	8761668	8762404	-	Cre12.g545650.t1.2	Cre12.g545650.t1.2		8760578	8762468	
chr12	8756128	8758463	8756865	8757829	-	Cre12.g545700.t1.1	Cre12.g545700.t1.1		8757801,8757415,8756128	8758463,8757563,8757120	
chr12	8758564	8760575	8758628	8759027	+	Cre12.g545703.t1.1	Cre12.g545703.t1.1		8758564,8758838	8758658,8760575	
chr12	8760578	8764363	8763565	8764259	-	Cre12.g545704.t1.1	Cre12.g545704.t1.1		8760578	8764363	
chr12	8744890	8748083	8745646	8747850	-	Cre12.g545750.t1.2	Cre12.g545750.t1.2		8747661,8747015,8746485,8744890	8748083,8747374,8746820,8746261	null-allele mutant was isolated (PMID 29743196)
chr12	8750574	8756105	8751175	8755775	+	Cre12.g545752.t1.1	Cre12.g545752.t1.1		8750574,8751152,8753152,8753544,8753958,8754750,8755095,8755437,8755580	8750693,8751190,8753243,8753701,8754002,8754803,8755230,8755482,8756105	
chr12	8737134	8744255	8737257	8743718	+	ROC55	Cre12.g545800.t1.1		8737134,8738705,8739058,8739497,8739966,8740588,8742008,8742355,8742743,8743333,8743640	8738487,8738854,8739242,8739682,8740414,8741576,8742187,8742516,8742838,8743458,8744255	Circadian rhythm related protein of unknown function; in Matsuo et al. (2008), roc11 and roc55 (rhythm of chloroplast) circadian rhythm mutant loci map here
chr12	8731908	8736104	8732440	8735896	-	FAP363	Cre12.g545850.t1.2		8735850,8735328,8734863,8734278,8733745,8733333,8733009,8732724,8731908	8736104,8735508,8735037,8734455,8733892,8733552,8733122,8732800,8732477	C-terminus Similar to HSP70
chr12	8727038	8731323	8727995	8730741	-	Cre12.g545900.t1.2	Cre12.g545900.t1.2		8731071,8730705,8729988,8729560,8729237,8728457,8727038	8731323,8730749,8730043,8729671,8729430,8729083,8727995	
chr12	8719218	8726523	8719968	8726439	-	MAPKKK9	Cre12.g545950.t1.1		8726139,8725942,8725553,8725029,8724713,8724345,8723758,8722793,8722468,8722109,8721842,8721586,8721232,8720920,8720727,8720518,8720351,8719218	8726523,8725995,8725669,8725258,8724786,8724520,8724156,8723627,8722558,8722139,8721958,8721687,8721392,8721004,8720751,8720585,8720401,8720145	MAP3K9
chr12	8717274	8719215	8717433	8718833	+	MRPL54	Cre12.g546000.t1.2		8717274,8717847,8718365,8718761	8717557,8717976,8718422,8719215	
chr12	9545182	9550767	9545612	9550443	-	Cre12.g546027.t1.1	Cre12.g546027.t1.1		9550206,9549675,9549409,9549068,9548858,9548534,9548218,9548026,9547710,9547269,9546881,9546533,9546275,9545900,9545182	9550767,9549865,9549478,9549141,9548916,9548660,9548277,9548057,9547817,9547470,9547089,9546708,9546313,9546019,9545663	
chr12	8710460	8717173	8711326	8717087	-	DXR1	Cre12.g546050.t1.2		8716919,8716606,8716054,8715754,8714968,8714586,8714009,8713372,8712910,8712553,8712028,8711653,8710460	8717173,8716734,8716128,8715828,8715073,8714668,8714104,8713455,8713035,8712615,8712098,8711821,8711449	1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (ispC) (yaeM), chloroplast precursor
chr12	8703575	8709557	8704052	8709447	-	FAP125	Cre12.g546100.t1.1		8708977,8708407,8708031,8707679,8707368,8707143,8706812,8706442,8706039,8705534,8705175,8704802,8704266,8703575	8709557,8708683,8708184,8707861,8707522,8707241,8706956,8706695,8706263,8705884,8705345,8705035,8704629,8704135	kinesin-14 (C-terminal motor) family; Similar to Kinesin KIF17; Flagellar Associated Protein found in the flagellar proteome
chr12	8703575	8709527	8704052	8709162	-	FAP125	Cre12.g546100.t2.1		8708977,8708407,8708031,8707679,8707368,8707143,8706812,8706442,8706039,8705534,8705175,8704802,8704266,8703575	8709527,8708683,8708184,8707861,8707522,8707241,8706956,8706695,8706263,8705884,8705345,8705035,8704629,8704135	kinesin-14 (C-terminal motor) family; Similar to Kinesin KIF17; Flagellar Associated Protein found in the flagellar proteome
chr12	8701908	8702841	8702020	8702612	+	PETM	Cre12.g546150.t1.2		8701908,8702238,8702549	8702127,8702367,8702841	Small subunit of plastoquinol-plastocyanin oxido-reductase, chloroplast precursor; GI:2493687; PMID: 8631873, PMID: 8616155, PMID: 7493968
chr12	8698842	8701106	8698893	8700678	-	RBL5	Cre12.g546200.t1.2		8700671,8700286,8699871,8699498,8699083,8698842	8701106,8700539,8699961,8699672,8699248,8698920	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted; lacks the catalytic Ser and conserved Asn, and hence probably inactive as a protease
chr12	8696408	8698839	8696489	8697427	+	SRP9	Cre12.g546250.t1.2		8696408,8696750,8697335	8696627,8696852,8698839	Expressed Protein. Similar to the SRP9 subunit of the Signal Recognition Particle. Involved in ER protein translocation.
chr12	8690562	8696287	8691459	8696193	-	Cre12.g546300.t1.2	Cre12.g546300.t1.2		8696025,8695494,8695204,8694975,8694654,8694339,8693934,8693531,8692666,8692318,8691988,8690562	8696287,8695619,8695281,8695056,8694736,8694422,8694053,8693629,8692698,8692464,8692137,8691867	
chr12	8688072	8690515	8688114	8690386	-	Cre12.g546350.t1.2	Cre12.g546350.t1.2		8690235,8690003,8689526,8689209,8688693,8688204,8688072	8690515,8690150,8689686,8689351,8688770,8688341,8688159	ts-lethal mutant has a fragile cell membrane when poked with a needle at restrictive temperature (PMID 29743196)
chr12	8686131	8688069	8686215	8687095	+	DLR2	Cre12.g546400.t1.2		8686131,8686283,8686414,8686561,8686831,8687042	8686218,8686324,8686476,8686644,8686888,8688069	Found in Outer Arm Dynein, Cytoplasmic Dynein 1b, and Innner Arm Dynein I1/f; member LC7/Roadblock family;  members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein.  LC7b interacts with IC138, DC2, LC3
chr12	8681286	8685987	8681348	8685266	-	Cre12.g546450.t1.1	Cre12.g546450.t1.1		8685754,8685583,8685181,8684824,8684327,8684027,8683726,8683504,8683181,8682555,8681286	8685987,8685679,8685481,8684966,8684558,8684201,8683882,8683555,8683342,8682925,8682230	
chr12	9550878	9555188	9551063	9554769	+	Cre12.g546452.t1.1	Cre12.g546452.t1.1		9550878,9551603,9551983,9552347,9552629,9552906,9553204,9553566,9553954,9554544	9551365,9551798,9552213,9552490,9552679,9552956,9553282,9553668,9554266,9555188	
chr12	8675408	8681279	8676107	8680333	+	TEF22	Cre12.g546500.t1.2		8675408,8676549,8677024,8677316,8678004,8678393,8678668,8679013,8679408,8679765	8676344,8676728,8677157,8677748,8678209,8678468,8678805,8679227,8679575,8681279	Protein with unknown function, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]; null-allele mutant was isolated (PMID 29743196)
chr12	8671306	8675189	8672641	8675145	-	FEA1	Cre12.g546550.t1.1		8675034,8674892,8674604,8674320,8673877,8673528,8673127,8671306	8675189,8674930,8674696,8674417,8674037,8673713,8673278,8672890	high-CO2 inducible, iron-deficiency inducible, periplasmic protein
chr12	8666912	8670847	8667826	8670805	-	FEA2	Cre12.g546600.t1.1		8670679,8670528,8670294,8669969,8669660,8669347,8668936,8668424,8668121,8666912	8670847,8670566,8670386,8670060,8669708,8669452,8669127,8668575,8668257,8667932	High-CO2 inducible, periplasmic protein. Cis-acting regulatory elements were characterized by Fei et al. 29 [PMID: 1935175].
chr12	6757433	6761710	6758205	6760999	+	Cre12.g546633.t1.1	Cre12.g546633.t1.1		6757433,6758426,6760344	6758236,6759734,6761710	
chr12	8663831	8666773	8663942	8665340	+	UBC23	Cre12.g546650.t1.2		8663831,8664056,8664656,8664930,8665184	8663988,8664158,8664753,8665030,8666773	
chr12	8656788	8663683	8656879	8663235	+	Cre12.g546700.t1.1	Cre12.g546700.t1.1		8656788,8657452,8657929,8658291,8658734,8659221,8659760,8660198,8660577,8660854,8661199,8661405,8661837,8662423,8662625,8663104	8657143,8657678,8658066,8658462,8658907,8659475,8659959,8660305,8660634,8660957,8661304,8661516,8662285,8662497,8662961,8663683	
chr12	8656788	8663683	8656879	8663235	+	Cre12.g546700.t2.1	Cre12.g546700.t2.1		8656788,8657452,8657929,8658291,8658734,8659221,8659760,8660198,8660577,8660854,8661199,8661417,8661837,8662423,8662625,8663104	8657143,8657678,8658066,8658462,8658907,8659475,8659959,8660305,8660634,8660957,8661304,8661516,8662285,8662497,8662961,8663683	
chr12	8652772	8656687	8652799	8656413	-	Cre12.g546750.t1.1	Cre12.g546750.t1.1		8656515,8655982,8655769,8655420,8654927,8654650,8654040,8653639,8653085,8652772	8656687,8656421,8655841,8655518,8655193,8654790,8654513,8653752,8653316,8652799	
chr12	8648022	8652707	8649686	8652363	-	Cre12.g546770.t1.2	Cre12.g546770.t1.2		8652684,8651541,8651111,8650742,8650360,8648022	8652707,8652459,8651349,8650918,8650495,8650163	
chr12	8642192	8647925	8642870	8647413	-	PHC53	Cre12.g546800.t1.1		8647803,8647263,8646741,8646338,8646070,8645537,8645177,8644446,8644135,8643569,8642192	8647925,8647529,8646983,8646541,8646162,8645726,8645337,8644883,8644203,8643887,8643205	
chr12	8636718	8641110	8637138	8639838	+	Cre12.g546850.t1.2	Cre12.g546850.t1.2		8636718,8638118,8638547,8638969,8639262	8637939,8638356,8638723,8639104,8641110	
chr12	9555248	9562569	9555655	9561768	+	Cre12.g546877.t1.1	Cre12.g546877.t1.1		9555248,9555620,9555807	9555489,9555709,9562569	
chr12	9555248	9562569	9555655	9561768	+	Cre12.g546877.t2.1	Cre12.g546877.t2.1		9555248,9555807	9555709,9562569	
chr12	8628618	8635846	8628944	8634983	+	Cre12.g546900.t1.1	Cre12.g546900.t1.1		8628618,8629306,8629681,8630118,8630363,8630653,8631273,8631748,8632108,8632512,8634071,8634628	8629162,8629495,8629953,8630189,8630441,8630877,8631466,8631855,8632299,8633724,8634398,8635846	
chr12	8628618	8635846	8628944	8634983	+	Cre12.g546900.t2.1	Cre12.g546900.t2.1		8628618,8629306,8629681,8630118,8630363,8630653,8631273,8631748,8632108,8632536,8634071,8634628	8629162,8629495,8629953,8630189,8630441,8630877,8631466,8631855,8632299,8633724,8634398,8635846	
chr12	8624172	8628487	8624901	8627857	-	Cre12.g546950.t1.1	Cre12.g546950.t1.1		8627579,8627414,8627016,8626627,8624172	8628487,8627479,8627208,8626806,8626449	
chr12	8620402	8621787	8620654	8621633	-	Cre12.g547000.t1.2	Cre12.g547000.t1.2		8620402	8621787	
chr12	8621836	8624117	8622536	8624043	-	Cre12.g547001.t1.1	Cre12.g547001.t1.1		8623511,8623286,8622601,8621836	8624117,8623396,8623170,8622536	
chr12	8616698	8620399	8616726	8619958	+	Cre12.g547050.t1.2	Cre12.g547050.t1.2		8616698,8616931,8617519,8618012,8619096,8619789	8616853,8617129,8617592,8618100,8619412,8620399	
chr12	8613237	8616597	8613774	8616572	-	CGL2	Cre12.g547100.t1.1		8616492,8616130,8615768,8615396,8614798,8614519,8614260,8613237	8616597,8616373,8615821,8615535,8614906,8614584,8614307,8613915	Conserved in the Green Lineage
chr12	8609618	8613219	8609886	8612510	+	Cre12.g547150.t1.2	Cre12.g547150.t1.2		8609618,8611132,8611615,8612105	8610013,8611247,8611803,8613219	
chr12	8601002	8608717	8601461	8607927	-	PTK6	Cre12.g547200.t1.1		8605065,8604853,8603895,8603482,8603017,8602670,8602360,8602025,8601002	8608717,8604954,8604574,8603635,8603188,8602846,8602412,8602269,8601807	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr12	8593740	8597457	8593904	8597372	-	Cre12.g547250.t1.2	Cre12.g547250.t1.2		8597194,8596746,8596406,8596192,8593740	8597457,8597029,8596451,8596236,8595898	
chr12	8586057	8593637	8586752	8593482	-	Cre12.g547300.t1.1	Cre12.g547300.t1.1		8593180,8592742,8592443,8591661,8591285,8591055,8590492,8590199,8589803,8589270,8588977,8588588,8588232,8587864,8587599,8587130,8586057	8593637,8592889,8592493,8591738,8591357,8591158,8590590,8590246,8589921,8589477,8589108,8588738,8588350,8587975,8587693,8587300,8586926	
chr12	9563106	9577187	9563548	9577120	-	Cre12.g547302.t1.1	Cre12.g547302.t1.1		9577053,9576268,9575910,9575370,9575226,9574971,9574612,9574318,9573941,9573708,9573421,9573228,9570172,9569968,9569624,9566077,9565846,9565621,9565385,9565092,9564752,9564535,9563106	9577187,9576357,9576061,9575671,9575259,9575076,9574672,9574474,9574039,9573740,9573595,9573318,9570275,9570068,9569819,9566102,9565967,9565685,9565434,9565141,9564917,9564604,9564369	
chr12	8574732	8585767	8575286	8585663	-	CYG31	Cre12.g547350.t1.1		8585546,8585279,8584932,8584788,8584226,8583756,8583151,8582692,8581836,8581544,8580911,8580677,8580108,8579738,8579316,8578516,8578178,8574732	8585767,8585358,8585016,8584844,8584599,8584047,8583465,8582862,8582321,8581654,8581339,8580727,8580335,8579795,8579488,8578878,8578302,8577789	C-terminal domain similar to membrane guanylyl cyclase OlGC1 [Oryzias latipes]
chr12	8562808	8574667	8564825	8574002	-	Cre12.g547351.t1.2	Cre12.g547351.t1.2		8574450,8573837,8572304,8571352,8571057,8570811,8570498,8570192,8569924,8569426,8568995,8568663,8568468,8568184,8567923,8567111,8562808	8574667,8574022,8573629,8571378,8571158,8570883,8570616,8570287,8570023,8569736,8569240,8568795,8568544,8568322,8568026,8567753,8566918	
chr12	8559418	8562210	8559481	8561426	+	Cre12.g547400.t1.1	Cre12.g547400.t1.1		8559418,8560163,8560594,8560996,8561327	8559549,8560229,8560728,8561058,8562210	
chr12	8552458	8559307	8552888	8559148	-	VPS9	Cre12.g547450.t1.2		8559041,8558780,8558338,8557980,8557498,8557207,8556759,8555487,8555109,8552458	8559307,8558927,8558490,8558054,8557579,8557262,8556845,8556211,8555256,8554790	Hypothetical Conserved Protein. Similar to VPS9, a guanine nucleotide exchange factor involved in vesicle-mediated vacuolar protein transport; null-allele mutant was isolated (PMID 29743196)
chr12	8550948	8552317	8551020	8551762	+	Cre12.g547500.t1.2	Cre12.g547500.t1.2		8550948,8551424,8551762	8551234,8551592,8552317	
chr12	8537650	8538547	8537964	8538339	-	Cre12.g547650.t1.2	Cre12.g547650.t1.2		8538225,8537650	8538547,8538147	
chr12	8539283	8550777	8539331	8550660	-	Cre12.g547651.t3.1	Cre12.g547651.t3.1		8550102,8549682,8549319,8548998,8548721,8548499,8548309,8548034,8547834,8547471,8546191,8545251,8544109,8541718,8541430,8539283	8550777,8549897,8549570,8549189,8548846,8548612,8548395,8548180,8547902,8547704,8547345,8546025,8544719,8543956,8541549,8541256	
chr12	8538672	8550777	8539331	8550660	-	Cre12.g547651.t1.1	Cre12.g547651.t1.1		8550102,8549682,8549319,8548998,8548721,8548499,8548309,8548034,8547834,8547471,8546191,8545251,8544109,8541718,8541430,8538672	8550777,8549897,8549570,8549189,8548846,8548612,8548395,8548180,8547902,8547704,8547345,8546025,8544719,8543956,8541549,8541256	
chr12	8538672	8544767	8539331	8544730	-	Cre12.g547651.t2.1	Cre12.g547651.t2.1		8544109,8541718,8541430,8538672	8544767,8543956,8541549,8541256	
chr12	8544817	8550777	8545197	8550660	-	Cre12.g547651.t4.1	Cre12.g547651.t4.1		8550102,8549682,8549319,8548998,8548721,8548499,8548309,8548034,8547834,8547471,8546191,8544817	8550777,8549897,8549570,8549189,8548846,8548612,8548395,8548180,8547902,8547704,8547345,8546025	
chr12	8524114	8530555	8524366	8529738	+	TTL14	Cre12.g547700.t1.2		8524114,8524519,8524905,8525308,8525749,8526556,8527081,8527457,8527920,8528274,8528700,8529033	8524432,8524636,8525086,8525381,8526144,8526717,8527199,8527539,8527964,8528351,8528762,8530555	
chr12	9577234	9579777	9577802	9579606	-	Cre12.g547727.t1.1	Cre12.g547727.t1.1		9579589,9579258,9578870,9578451,9577234	9579777,9579417,9578971,9578653,9577965	
chr12	9577234	9579777	9577802	9579606	-	Cre12.g547727.t2.1	Cre12.g547727.t2.1		9579589,9579258,9578870,9578451,9577865,9577234	9579777,9579417,9578971,9578625,9577965,9577820	
chr12	8522598	8523973	8522659	8523875	-	Cre12.g547734.t1.2	Cre12.g547734.t1.2		8523717,8523583,8523466,8523350,8523158,8522915,8522598	8523973,8523646,8523524,8523407,8523254,8522991,8522737	
chr12	8517758	8522543	8518310	8522478	-	SPCS	Cre12.g547750.t1.2		8522307,8521768,8521159,8520525,8519247,8518686,8517758	8522543,8521987,8521586,8520755,8519420,8519032,8518527	O-phophoseryl selenocysteyl synthase; synthesizes Selenocysteine-tRNA(Sec) from O-phosphoseryl-tRNA(Sec)and senelophosphate; O-phosphoseryl-tRNA(Sec) selenium transferase (Sec synthase) (Selenocysteinyl-tRNA(Sec) synthase) (Sep-tRNA:Sec-tRNA synthase) (SepSecS) (UGA suppressor tRNA-associated protein) (tRNA(Ser/Sec)-associated antigenic protein) (SLA/LP autoantigen) (Soluble liver antigen) (SLA) (Liver-pancreas antigen) (LP) (SLA-p35)
chr12	8513628	8517693	8514158	8517065	-	SNE15	Cre12.g547800.t1.1		8517212,8517033,8516713,8516369,8515868,8515449,8514984,8514627,8513628	8517693,8517098,8516812,8516426,8515994,8515586,8515115,8514774,8514341	Putative cinnamoyl-CoA reductase/flavanone 4-reductase, an NAD dependent epimerase/dehydratase.  Also in the 3-beta hydroxysteroid dehydrogenase/isomerase family
chr12	8511098	8513573	8511841	8513499	-	Cre12.g547850.t1.2	Cre12.g547850.t1.2		8513387,8513202,8512874,8512352,8511098	8513573,8513270,8512947,8512433,8511951	
chr12	8507984	8511094	8508514	8510140	+	MCP27	Cre12.g547900.t1.2		8507984,8508449,8508960,8509607,8510071	8508279,8508724,8509427,8509720,8511094	
chr12	8506168	8507883	8506541	8507510	-	Cre12.g547950.t1.2	Cre12.g547950.t1.2		8507399,8507097,8506168	8507883,8507198,8506919	
chr12	8494748	8506113	8495073	8505862	-	Cre12.g548000.t1.2	Cre12.g548000.t1.2		8505705,8505187,8504520,8503991,8503113,8499356,8498798,8498223,8497781,8494748	8506113,8505400,8505037,8504118,8503405,8502764,8499010,8498444,8497906,8497404	
chr12	8474253	8490143	8475578	8489975	-	CYG32	Cre12.g548050.t1.1		8489669,8489308,8488768,8488315,8484866,8484076,8479984,8479638,8479189,8478834,8478412,8478151,8477716,8474253	8490143,8489451,8488916,8488481,8488158,8484567,8483907,8479715,8479398,8478962,8478543,8478204,8477926,8477521	similar to guanylyl cyclase receptor [Bactrocera dorsalis]
chr12	8490264	8494671	8490400	8493767	+	Cre12.g548051.t1.1	Cre12.g548051.t1.1		8490264,8492105,8492315,8492915,8493348	8491951,8492192,8492768,8493105,8494671	
chr12	8469284	8474245	8469567	8473286	+	UBC7	Cre12.g548100.t1.1		8469284,8470462,8472038,8472399,8472796	8470302,8471853,8472232,8472484,8474245	putative ubiquitin-protein ligase (E3, HECT domain), weakly Similar to E3 ubiquitin ligase Smurf2
chr12	9579918	9582889	9580037	9581998	+	Cre12.g548152.t1.1	Cre12.g548152.t1.1		9579918,9580228,9580493,9580696,9581717	9580130,9580273,9580527,9581539,9582889	
chr12	8454558	8460473	8455551	8460338	-	Cre12.g548200.t1.1	Cre12.g548200.t1.1		8458227,8457051,8456618,8455972,8454558	8460473,8457900,8456770,8456378,8455780	
chr12	8461834	8468508	8462082	8467802	+	Cre12.g548201.t1.1	Cre12.g548201.t1.1		8461834,8462204,8462645,8464330,8466304,8466884	8462131,8462309,8464042,8466146,8466704,8468508	
chr12	8451494	8454555	8451535	8454370	+	Cre12.g548250.t1.1	Cre12.g548250.t1.1		8451494,8451713,8452011,8452402,8452641,8453223,8453705	8451638,8451774,8452152,8452475,8452811,8453457,8454555	
chr12	8451494	8454555	8451535	8454370	+	Cre12.g548250.t2.1	Cre12.g548250.t2.1		8451494,8451713,8452011,8452402,8452641,8453223,8453708	8451638,8451774,8452152,8452475,8452811,8453457,8454555	
chr12	8449768	8451393	8450353	8451278	-	Cre12.g548300.t1.2	Cre12.g548300.t1.2		8451254,8451018,8450693,8449768	8451393,8451181,8450846,8450467	
chr12	8445188	8449713	8446001	8449003	-	Cre12.g548350.t1.2	Cre12.g548350.t1.2		8449576,8449208,8448964,8448713,8448214,8447888,8447582,8447035,8446418,8445188	8449713,8449261,8449050,8448788,8448364,8448068,8447674,8447228,8446713,8446174	null-allele mutant was isolated (PMID 29743196)
chr12	8443864	8445185	8444281	8444501	+	Cre12.g548391.t1.2	Cre12.g548391.t1.2		8443864	8445185	
chr12	8441637	8443566	8442092	8443537	-	LHCBM2	Cre12.g548400.t1.2		8443477,8443193,8442632,8441637	8443566,8443256,8442951,8442398	Encoding a light-harvesting antenna protein for PS2. This gene was reported under the name of LhcII-3" in PMID: 11522911
chr12	8433134	8438905	8433231	8438625	+	Cre12.g548450.t1.1	Cre12.g548450.t1.1		8433134,8433360,8434163,8434673,8435082,8435624,8436312,8436656,8437002,8437335,8437687,8438103,8438442	8433288,8434000,8434252,8434919,8435300,8436109,8436360,8436759,8437085,8437456,8437869,8438139,8438905	
chr12	8423018	8432683	8424727	8432351	-	Cre12.g548500.t1.2	Cre12.g548500.t1.2		8432156,8431873,8431287,8430773,8430489,8430277,8430057,8429849,8429536,8429261,8429013,8428800,8428473,8428110,8427757,8427320,8426961,8426559,8426126,8425763,8425422,8425001,8423018	8432683,8431909,8431446,8430855,8430574,8430334,8430076,8429906,8429634,8429325,8429054,8428850,8428617,8428211,8427846,8427554,8427082,8426659,8426270,8425896,8425502,8425122,8424782	
chr12	8419428	8422963	8420026	8422877	-	Cre12.g548550.t1.1	Cre12.g548550.t1.1		8422794,8422458,8421715,8421399,8421000,8420412,8419428	8422963,8422698,8422234,8421485,8421169,8420741,8420161	
chr12	8419428	8422963	8420026	8422877	-	Cre12.g548550.t2.1	Cre12.g548550.t2.1		8422794,8422458,8421715,8421399,8421000,8420412,8419428	8422963,8422698,8422234,8421485,8421169,8420735,8420161	
chr12	9582948	9587899	9583056	9587637	+	Cre12.g548577.t1.1	Cre12.g548577.t1.1		9582948,9583144,9583283,9586161,9587064	9583078,9583198,9585872,9586805,9587899	
chr12	8409353	8414843	8410251	8414648	-	BBS4	Cre12.g548650.t1.1		8414582,8414384,8414068,8412956,8412459,8411921,8411454,8410633,8409353	8414843,8414486,8414144,8413095,8412558,8412103,8411564,8410921,8410406	Flagellar protein, peripheral BBsome component; interacts with the centriolar satellite protein PCM1 and recruits the entire BBSome complex to the centrosome
chr12	8415004	8419395	8415034	8418867	+	Cre12.g548651.t1.1	Cre12.g548651.t1.1		8415004,8416821,8418423	8416631,8417953,8419395	
chr12	8403548	8408723	8404499	8408331	-	Cre12.g548700.t1.2	Cre12.g548700.t1.2		8407926,8407135,8405903,8405556,8404865,8403548	8408723,8407543,8406871,8405724,8405007,8404499	
chr12	8403548	8408723	8404460	8408331	-	Cre12.g548700.t2.1	Cre12.g548700.t2.1		8407926,8407135,8405903,8405556,8404865,8403548	8408723,8407543,8406871,8405724,8405007,8404460	
chr12	8406048	8408723	8406362	8408331	-	Cre12.g548700.t3.1	Cre12.g548700.t3.1		8407926,8407135,8406048	8408723,8407543,8406871	
chr12	8408834	8409345	8408891	8409075	+	Cre12.g548702.t1.1	Cre12.g548702.t1.1		8408834	8409345	
chr12	8403548	8405993	8404499	8405962	-	Cre12.g548750.t1.1	Cre12.g548750.t1.1		8405903,8405556,8404865,8403548	8405993,8405724,8405007,8404499	
chr12	8399298	8403493	8400888	8402847	-	Cre12.g548800.t1.1	Cre12.g548800.t1.1		8402451,8401669,8399298	8403493,8402068,8401394	
chr12	8392193	8396690	8392830	8396507	-	ROC23	Cre12.g548900.t1.1		8396208,8395973,8395372,8395061,8394524,8393884,8393285,8392193	8396690,8396072,8395515,8395120,8394668,8394285,8393625,8392935	Circadian rhythm related protein of unknown function with PH-domains;  mutant has low amplitude / arythmic (LA I) phenotype; Matsuo et al.'s (2008) roc23 and roc112 (rhythm of chloroplast) circadian rhythm mutant loci map here
chr12	8396839	8399243	8397767	8398939	-	Cre12.g548901.t1.1	Cre12.g548901.t1.1		8399220,8398878,8398249,8396839	8399243,8399046,8398391,8397851	
chr12	8390064	8391748	8390099	8391473	+	LHCBM7	Cre12.g548950.t1.2		8390064,8390364,8390620,8391167	8390159,8390427,8390939,8391748	
chr12	8389328	8389943	8389510	8389724	-	Cre12.g548955.t1.2	Cre12.g548955.t1.2		8389328	8389943	
chr12	8385044	8387899	8385393	8387307	+	PHC4	Cre12.g549000.t1.2		8385044,8385699,8386225	8385452,8386039,8387899	pherophorin-C4 (PHC4) [PMID: 16367971; Genbank entry DQ196110]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain
chr12	9588918	9596619	9588958	9596300	+	Cre12.g549002.t1.1	Cre12.g549002.t1.1		9588918,9589274,9589529,9591716,9592248,9592854,9593327,9594353,9595706	9589039,9589375,9591409,9592123,9592628,9593108,9594130,9594520,9596619	
chr12	8378114	8382411	8378287	8381964	+	STR1	Cre12.g549050.t1.2		8378114,8378607,8378913,8379156,8379674,8380230,8380603,8380903,8381262,8381745	8378339,8378704,8378982,8379238,8379802,8380385,8380680,8381054,8381424,8382411	Homologue of plant, animal and bacterial strictosidine synthases [PMID: 10777701], which converts tryptamine and secaloganin into strictosidine, the precursor of monoterpenoid indole alkaloids
chr12	8378154	8382411	8378287	8381964	+	STR1	Cre12.g549050.t2.1		8378154,8378610,8378913,8379156,8379674,8380230,8380603,8380903,8381262,8381745	8378339,8378704,8378982,8379238,8379802,8380385,8380680,8381054,8381424,8382411	Homologue of plant, animal and bacterial strictosidine synthases [PMID: 10777701], which converts tryptamine and secaloganin into strictosidine, the precursor of monoterpenoid indole alkaloids
chr12	8374224	8378061	8374343	8377741	+	UAF3	Cre12.g549100.t1.1		8374224,8374554,8374756,8375002,8375477,8375770,8376115,8376586,8377092,8377291	8374390,8374634,8374843,8375176,8375605,8375888,8376369,8376630,8377097,8378061	Similar to U2AF large subunit; RNA-binding region RNP-1 (RNA recognition motif)
chr12	8374224	8378061	8374343	8377741	+	UAF3	Cre12.g549100.t2.1		8374224,8374554,8374762,8375002,8375477,8375770,8376115,8376586,8377092,8377291	8374390,8374634,8374843,8375176,8375605,8375888,8376369,8376630,8377097,8378061	Similar to U2AF large subunit; RNA-binding region RNP-1 (RNA recognition motif)
chr12	8374224	8378061	8374343	8377741	+	UAF3	Cre12.g549100.t3.1		8374224,8374554,8374756,8375002,8375477,8375770,8376115,8377291	8374390,8374634,8374843,8375176,8375605,8375888,8376369,8378061	Similar to U2AF large subunit; RNA-binding region RNP-1 (RNA recognition motif)
chr12	8374224	8376745	8374343	8376586	+	UAF3	Cre12.g549100.t4.1		8374224,8374554,8374756,8375002,8375477,8375770,8376115,8376586	8374390,8374634,8374843,8375176,8375605,8375888,8376384,8376745	Similar to U2AF large subunit; RNA-binding region RNP-1 (RNA recognition motif)
chr12	8376794	8378061	8377353	8377741	+	UAF3	Cre12.g549100.t5.1		8376794,8377291	8377097,8378061	Similar to U2AF large subunit; RNA-binding region RNP-1 (RNA recognition motif)
chr12	8369498	8374093	8369839	8373710	-	Cre12.g549150.t1.1	Cre12.g549150.t1.1		8374056,8373615,8372160,8371065,8369498	8374093,8373713,8373384,8372043,8370909	null-allele mutant was isolated (PMID 29743196)
chr12	8363114	8369495	8363470	8368915	+	Cre12.g549200.t1.1	Cre12.g549200.t1.1		8363114,8363951,8364256,8364523,8364739,8364990,8365410,8365752,8366098,8366356,8366618,8366917,8367177,8367460,8367643,8367980,8368416,8368860	8363613,8364033,8364399,8364600,8364789,8365147,8365454,8365881,8366190,8366445,8366721,8367017,8367313,8367560,8367787,8368188,8368681,8369495	
chr12	8357638	8361403	8358268	8360742	-	Cre12.g549250.t1.1	Cre12.g549250.t1.1		8361170,8360603,8360334,8360156,8359783,8359408,8357638	8361403,8360906,8360413,8360224,8360001,8359512,8359120	
chr12	8354544	8357635	8354923	8357041	+	MIP1	Cre12.g549300.t1.2		8354544,8354923,8355195,8355885,8356218,8356853	8354686,8355102,8355364,8355997,8356470,8357635	related to plant tonoplast TIP and aquaporins, major intrinsic protein; possible glycerol transport activity
chr12	8350739	8354433	8351556	8354374	-	Cre12.g549350.t1.2	Cre12.g549350.t1.2		8354278,8353880,8353594,8353205,8352521,8352212,8351882,8350739	8354433,8354017,8353661,8353290,8352735,8352277,8352001,8351631	null-allele mutant was isolated (PMID 29743196)
chr12	8344674	8350295	8344714	8349603	+	Cre12.g549400.t1.1	Cre12.g549400.t1.1		8344674,8345404,8345972,8346313,8349350	8345008,8345613,8346087,8349030,8350295	
chr12	9596818	9603862	9597084	9602916	+	Cre12.g549427.t1.1	Cre12.g549427.t1.1		9596818,9597637,9597926,9598448,9598911,9599296,9599654,9599937,9600437,9600794,9601251,9601518,9601939,9602290,9602637	9597114,9597664,9598220,9598687,9599010,9599495,9599750,9600148,9600596,9601003,9601316,9601787,9602077,9602390,9603862	
chr12	9596878	9603862	9598023	9602916	+	Cre12.g549427.t2.1	Cre12.g549427.t2.1		9596878,9597926,9598448,9598911,9599296,9599654,9599937,9600437,9600794,9601251,9601518,9601939,9602290,9602637	9597664,9598220,9598687,9599010,9599495,9599750,9600148,9600596,9601003,9601316,9601787,9602077,9602390,9603862	
chr12	8341502	8344618	8341899	8344088	+	Cre12.g549450.t1.2	Cre12.g549450.t1.2		8341502,8341790,8342169,8342861,8343227,8343432,8343911	8341688,8341925,8342325,8342944,8343314,8343529,8344618	
chr12	8336928	8341403	8337103	8341290	-	Cre12.g549500.t1.2	Cre12.g549500.t1.2		8341198,8340961,8340630,8340166,8339890,8339540,8338525,8336928	8341403,8341042,8340706,8340212,8339929,8339701,8339381,8337103	
chr12	8332995	8335438	8333449	8335326	-	TUB2	Cre12.g549550.t1.2		8335302,8335009,8334525,8332995	8335438,8335153,8334749,8334387	GI:167458; major constituent of microtubules [PMID: 3460413, PMID: 6098820]; it binds one mole of GTP that is hydrolyzed and alters dynamic instability of the microtubule cytoskeleton; ts-lethal mutant block at S/M (PMID 29743196)
chr12	8326940	8332945	8327598	8332283	-	Cre12.g549600.t1.1	Cre12.g549600.t1.1		8332250,8331681,8331337,8331098,8330393,8329986,8329686,8329383,8328971,8328779,8328363,8326940	8332945,8331991,8331478,8331169,8330924,8330125,8329757,8329403,8329144,8328835,8328457,8328097	
chr12	8323916	8326927	8324002	8326603	+	Cre12.g549650.t1.2	Cre12.g549650.t1.2		8323916,8324290,8324723,8325138,8325449,8325782,8326444	8324125,8324534,8324824,8325261,8325545,8326164,8326927	
chr12	8320186	8323867	8320265	8322365	+	Cre12.g549700.t1.2	Cre12.g549700.t1.2		8320186,8320634,8321039,8321456,8322167	8320544,8320715,8321118,8321506,8323867	
chr12	8316392	8320065	8317423	8319803	-	FAP4	Cre12.g549750.t1.2		8319774,8319466,8319335,8319119,8318916,8318182,8317872,8317578,8316392	8320065,8319559,8319404,8319267,8318969,8318505,8317998,8317719,8317436	Ser-/Thr-kinase domain; homology to casein kinase 1 of higher plants and animals where it is involved in phosphorylation of components of the circadian clock; found in the flagellar proteome [PMID: 15998802]
chr12	8309620	8314695	8310926	8314617	-	CSK5	Cre12.g549800.t1.2		8314364,8313558,8313175,8312746,8312326,8311996,8311545,8309620	8314695,8313727,8313263,8312902,8312436,8312090,8311677,8311298	ts-lethal mutant was isolated (PMID 29743196)
chr12	8305556	8309617	8305692	8309516	+	Cre12.g549850.t1.1	Cre12.g549850.t1.1		8305556,8307488,8307738,8308369	8307358,8307612,8308207,8309617	
chr12	9604718	9607557	9605283	9607518	-	Cre12.g549852.t1.1	Cre12.g549852.t1.1		9607465,9607275,9606840,9606328,9606006,9605751,9604718	9607557,9607344,9606983,9606459,9606166,9605863,9605402	
chr12	8297760	8305435	8297935	8305243	-	Cre12.g549900.t1.1	Cre12.g549900.t1.1		8305206,8303245,8302896,8302644,8302382,8301934,8300018,8299785,8299571,8299165,8298894,8297760	8305435,8305049,8303122,8302749,8302513,8302269,8301825,8299887,8299657,8299295,8298972,8298697	
chr12	8294516	8297733	8294869	8296899	+	Cre12.g549950.t1.2	Cre12.g549950.t1.2		8294516,8295187,8295640,8296124,8296520,8296835	8294968,8295293,8295740,8296177,8296568,8297733	SFT2-like protein that is conserved protein with four putative transmembrane helices, that may be involved in vesicular transport in later Golgi compartments
chr12	8287090	8293425	8290045	8292895	-	Cre12.g550000.t1.1	Cre12.g550000.t1.1		8293117,8292154,8291750,8291413,8287090	8293425,8292993,8291987,8291552,8290105	
chr12	8269758	8275305	8270373	8275271	-	Cre12.g550150.t1.1	Cre12.g550150.t1.1		8275199,8272686,8269758	8275305,8275026,8272439	
chr12	8275403	8286165	8275759	8286141	-	Cre12.g550152.t1.1	Cre12.g550152.t1.1		8286105,8285769,8285430,8285145,8284848,8284320,8284038,8283409,8283117,8282742,8281908,8281182,8280047,8279215,8278352,8277882,8277364,8276800,8276111,8275403	8286165,8285962,8285505,8285231,8284973,8284672,8284177,8283601,8283207,8282892,8282554,8281641,8280974,8279471,8278927,8278075,8277666,8277134,8276549,8275858	
chr12	8286266	8287081	8286314	8286879	+	Cre12.g550153.t1.1	Cre12.g550153.t1.1		8286266	8287081	
chr12	8266496	8269447	8266584	8269028	+	Cre12.g550200.t1.2	Cre12.g550200.t1.2		8266496,8266783,8267228,8267781,8268054,8268376,8268740	8266676,8266886,8267532,8267885,8268242,8268432,8269447	null-allele passenger mutation was isolated (PMID 29743196)
chr12	8260086	8266447	8260446	8265826	+	Cre12.g550250.t1.2	Cre12.g550250.t1.2		8260086,8260409,8260627,8260973,8261385,8261676,8263612,8264594,8265325	8260309,8260482,8260744,8261091,8261458,8263463,8264459,8265192,8266447	
chr12	9607607	9615627	9608403	9615309	-	MRS2	Cre12.g550277.t1.1		9615262,9614835,9614432,9613154,9612604,9612325,9611557,9610979,9610661,9610204,9609756,9609452,9608852,9607607	9615627,9615108,9614564,9614254,9612725,9612375,9612030,9611383,9610813,9610431,9610001,9609565,9609057,9608539	Mg2+ transporter protein, CorA-like and putative mitochondrial splicing factor, membrane protein
chr12	8249636	8259997	8249772	8259654	+	Cre12.g550300.t1.1	Cre12.g550300.t1.1		8249636,8250291,8250679,8251168,8251793,8252336,8252687,8252982,8253388,8253650,8255055,8256342	8249886,8250392,8250795,8251281,8251972,8252437,8252757,8253118,8253490,8254856,8256251,8259997	
chr12	8249636	8255977	8249772	8255960	+	Cre12.g550300.t2.1	Cre12.g550300.t2.1		8249636,8250291,8250679,8251168,8251793,8252336,8252687,8252982,8253388,8253650,8255055,8255944	8249886,8250392,8250795,8251281,8251972,8252437,8252757,8253118,8253490,8254856,8255875,8255977	
chr12	8234178	8249185	8234582	8248785	-	Cre12.g550350.t1.2	Cre12.g550350.t1.2		8248040,8247675,8246713,8244529,8240984,8240586,8239381,8238555,8236786,8235452,8234178	8249185,8247766,8246931,8246395,8244309,8240661,8240403,8239156,8236977,8236497,8235219	
chr12	8232312	8233936	8232720	8233729	-	GRX2	Cre12.g550400.t1.2		8233675,8233210,8232312	8233936,8233302,8232897	Glutaredoxin 2, CPYC type glutaredoxin, probably cytosolic. PMID: 16328797
chr12	8227616	8232307	8228077	8230904	+	Cre12.g550450.t1.2	Cre12.g550450.t1.2		8227616,8228293,8228580,8229433,8230004	8228115,8228395,8229090,8229701,8232307	
chr12	8225210	8226825	8225452	8226664	-	Cre12.g550468.t1.2	Cre12.g550468.t1.2		8226642,8226412,8226143,8225531,8225210	8226825,8226470,8226252,8225813,8225452	
chr12	8225210	8226915	8225452	8226775	-	Cre12.g550468.t2.1	Cre12.g550468.t2.1		8226762,8226642,8226412,8226143,8225531,8225210	8226915,8226669,8226474,8226229,8225813,8225452	
chr12	8218500	8219685	8218656	8219430	-	Cre12.g550500.t1.2	Cre12.g550500.t1.2		8219380,8218869,8218500	8219685,8219299,8218656	
chr12	8223331	8226965	8223889	8225572	-	Cre12.g550501.t1.1	Cre12.g550501.t1.1		8226642,8226412,8226143,8225531,8225240,8225055,8224725,8223331	8226965,8226474,8226252,8225813,8225452,8225085,8224812,8224653	
chr12	8223331	8226965	8223889	8225572	-	Cre12.g550501.t2.1	Cre12.g550501.t2.1		8226642,8226412,8226143,8225803,8225531,8225240,8225055,8224725,8223331	8226965,8226474,8226252,8225813,8225602,8225452,8225085,8224812,8224653	
chr12	8207116	8216757	8207561	8215488	+	CYG48	Cre12.g550550.t1.1		8207116,8207798,8209102,8209474,8212400,8213242,8213557,8213955,8214236,8214876	8207574,8208723,8209218,8212138,8212797,8213281,8213688,8214052,8214376,8216757	similar to guanylate cyclase 1, soluble, beta 2 [Homo sapiens]
chr12	8216760	8218445	8217733	8218361	-	Cre12.g550553.t1.1	Cre12.g550553.t1.1		8216760	8218445	
chr12	8204276	8207017	8204369	8205722	+	Cre12.g550600.t1.1	Cre12.g550600.t1.1		8204276,8204814,8205456	8204564,8204973,8207017	
chr12	8202655	8204175	8203370	8204066	-	MRPL14	Cre12.g550650.t1.2		8203738,8202655	8204175,8203405	
chr12	8200664	8202515	8201488	8202389	-	Cre12.g550700.t1.2	Cre12.g550700.t1.2		8200664	8202515	
chr12	9616318	9619088	9616675	9618395	+	TEF13	Cre12.g550702.t1.1		9616318,9616844,9617139,9617477,9617723,9618004,9618334	9616716,9616896,9617236,9617555,9617763,9618083,9619088	Protein with unknown function, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr12	8198367	8200355	8198912	8200241	-	Cre12.g550750.t1.2	Cre12.g550750.t1.2		8200088,8199888,8199562,8199163,8198367	8200355,8200025,8199639,8199266,8198961	
chr12	8185850	8198305	8186463	8197952	-	REV1	Cre12.g550800.t1.1		8197742,8197437,8196964,8196621,8195283,8194726,8194277,8193916,8193569,8193220,8192931,8192584,8192073,8191686,8191324,8190787,8189160,8188121,8185850	8198305,8197556,8197088,8196687,8196448,8194871,8194428,8194029,8193691,8193387,8192988,8192642,8192183,8191803,8191426,8190973,8190602,8189087,8187944	Homologous to eukaryotic Rev1; UV-revertible gene 1 product; constitutes the complex with translesion DNA polymerase, Polz; nuclear; functions in translesion synthesis (TLS) of damaged DNA.
chr12	8185850	8198305	8186463	8197952	-	REV1	Cre12.g550800.t2.1		8197742,8197437,8196964,8196621,8195283,8194726,8194277,8193916,8193569,8193220,8192931,8192584,8192073,8191686,8191324,8190787,8189461,8188121,8185850	8198305,8197556,8197088,8196687,8196448,8194871,8194428,8194029,8193691,8193387,8192988,8192642,8192183,8191803,8191426,8190973,8190602,8189103,8187944	Homologous to eukaryotic Rev1; UV-revertible gene 1 product; constitutes the complex with translesion DNA polymerase, Polz; nuclear; functions in translesion synthesis (TLS) of damaged DNA.
chr12	8183096	8185589	8183546	8184930	+	PSBP1	Cre12.g550850.t1.2		8183096,8183820,8184334,8184772	8183648,8184031,8184599,8185589	Chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving complex of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23);PMID: 3468511; targeted to thylakoid lumen by TAT pathway
chr12	8168206	8182487	8168293	8181590	+	SSD3	Cre12.g550900.t1.2		8168206,8168610,8169170,8169646,8170036,8170401,8170751,8171100,8171798,8172240,8172576,8173016,8173280,8173798,8174303,8174654,8175093,8175643,8176174,8176789,8177255,8177500,8178252,8178765,8179425,8180315,8180793,8181482	8168355,8168853,8169259,8169768,8170128,8170546,8170868,8171552,8171947,8172462,8172715,8173071,8173363,8173968,8174394,8174806,8175220,8175828,8176545,8176905,8177313,8177635,8178361,8179000,8179942,8180569,8181266,8182487	sterol sensing domain protein similar to Arabidopsis protein and similar to Niemann-Pick disease protein
chr12	8160836	8164493	8160872	8164118	+	Cre12.g551000.t1.2	Cre12.g551000.t1.2		8160836,8161044,8161363,8161746,8162876,8163455,8163830	8160953,8161118,8161552,8162584,8163100,8163553,8164493	
chr12	8164629	8168095	8164823	8168033	-	Cre12.g551001.t1.1	Cre12.g551001.t1.1		8167750,8166811,8166648,8164629	8168095,8167503,8166661,8165684	
chr12	8155920	8160725	8156584	8160491	-	Cre12.g551050.t1.2	Cre12.g551050.t1.2		8160409,8159966,8159430,8159104,8158775,8158537,8158177,8157786,8157430,8157021,8155920	8160725,8160114,8159483,8159241,8158823,8158620,8158331,8157990,8157467,8157107,8156692	
chr12	8152568	8155838	8152896	8154964	+	Cre12.g551100.t1.2	Cre12.g551100.t1.2		8152568,8153422,8153702,8154328,8154630	8152926,8153504,8153830,8154387,8155838	
chr12	9619768	9625489	9619911	9625171	+	Cre12.g551127.t1.1	Cre12.g551127.t1.1		9619768,9621276,9623284,9623745,9624199	9621152,9623022,9623622,9623909,9625489	
chr12	8144104	8150601	8144345	8148979	+	Cre12.g551200.t1.2	Cre12.g551200.t1.2		8144104,8144731,8145097,8145329,8145592,8145880,8146246,8146579,8146899,8147237,8147561,8147910,8148216,8148518	8144453,8144829,8145154,8145423,8145681,8145961,8146322,8146712,8147047,8147409,8147695,8148057,8148335,8150601	
chr12	8150866	8152517	8150918	8152107	+	Cre12.g551201.t1.1	Cre12.g551201.t1.1		8150866,8151190,8151646	8151072,8151459,8152517	Related to GCN5
chr12	8135775	8143285	8137299	8142905	-	Cre12.g551250.t1.2	Cre12.g551250.t1.2		8142890,8142772,8142585,8142114,8141686,8141303,8141059,8140583,8135775	8143285,8142806,8142672,8142224,8141814,8141456,8141109,8140781,8140333	
chr12	8119530	8129425	8121150	8129287	-	LAO2	Cre12.g551350.t1.2		8129245,8128961,8128449,8128085,8127850,8127569,8127309,8126963,8126702,8126554,8126345,8125904,8125622,8125394,8125046,8124701,8124495,8124175,8123798,8123551,8123402,8123188,8122780,8122498,8122277,8121936,8121596,8121386,8119530	8129425,8129024,8128559,8128131,8127926,8127617,8127414,8127175,8126816,8126616,8126409,8126194,8125730,8125470,8125215,8124850,8124590,8124298,8124010,8123665,8123464,8123252,8123073,8122606,8122353,8122105,8121745,8121481,8121213	L-amino acid oxidase, accessory subunit M[beta]; induced by nitrogen starvation; gene is next to divergently-transcribed LAO1 coding for oxidase subunit M[alpha]; associates with it in the heavy form of the periplasmic L-aminoacid oxidase; experimentally-determined mature N-terminal sequence :QLAFLDY...; is heavyly O-glycosylated; contains a P-rich region and 6 repeats (actually an almost perfect duplication of a three-repeat element) of the YjgF_YER057c_UK114_like_3 domain; this domain is found in RidA, an enamine/imine deaminase usually found as an homo-trimer; M[beta] could catalyze the second step of aminoacid oxidation, the hydrolysis of the imine intermediate, which can also occur spontaneously; coupling of the two reactions in a periplamsic L-aminoacid oxidase would ensure that release of NH4+ occurs in the vicinity of the plasma membrane
chr12	8129526	8132497	8129607	8132478	+	LAO1	Cre12.g551352.t1.1		8129526,8129671,8130153,8130346,8130519,8130886,8131229,8131645,8132034,8132177,8132290,8132416	8129614,8129838,8130238,8130414,8130640,8130985,8131319,8131820,8132114,8132211,8132342,8132497	L-amino acid oxidase, catalytic subunit M[alpha]; a flavoprotein binding FAD, heavyly O-glycosylated; induced by nitrogen starvation; gene is next to divergently-transcribed LAO2 coding for accessory subunit M[beta], an imine oxidase; errors in gene model: should be fused with downstream Cre12.g551353; the first and last exons are wrong, and the 5nt exon 11 is confirmed by cDNA sequencing (AAB97101 is the correct sequence)
chr12	8132546	8135711	8132554	8135001	+	LAO1	Cre12.g551353.t1.1		8132546,8132647,8132722,8132943,8133037,8133252,8133478,8133715,8134144,8134580,8134868	8132557,8132660,8132847,8132950,8133073,8133286,8133572,8133855,8134363,8134694,8135711	L-amino acid oxidase, catalytic subunit M[alpha]; a flavoprotein binding FAD, heavyly O-glycosylated; induced by nitrogen starvation; gene is next to divergently-transcribed LAO2 coding for accessory subunit M[beta], an imine oxidase; error in gene model: should be fused with upstream Cre12.g551352; the 5nt exon 11 is confirmed by cDNA sequencing (AAB97101 is the correct sequence)
chr12	8102866	8106833	8102979	8106605	+	DNJ14	Cre12.g551500.t1.1		8102866,8103255,8103435,8103790,8104473,8104906,8105124,8105578,8106008,8106433	8103169,8103308,8103550,8103987,8104559,8104953,8105240,8105733,8106147,8106833	DnaJ-like protein; probably cytosolic (no N-terminal extension); similar to proteins in Thermus thermophilus (Q72IK7 and Q56237) and Chloroflexus aurantiacus (Q3DWR4); contains N-terminal J-domain (pfam226) and DnaJ C-ter domain (pfam1556)
chr12	8106974	8110310	8109524	8110186	-	Cre12.g551501.t1.1	Cre12.g551501.t1.1		8109734,8106974	8110310,8109591	
chr12	8111226	8112870	8111306	8112239	+	Cre12.g551502.t1.1	Cre12.g551502.t1.1		8111226,8111601	8111316,8112870	
chr12	8114056	8119527	8114342	8119223	+	Cre12.g551503.t1.1	Cre12.g551503.t1.1		8114056,8114596,8114863,8115531,8116670,8118164,8118623	8114423,8114716,8115223,8116422,8116960,8118301,8119527	
chr12	8092696	8102817	8093070	8102139	+	Cre12.g551550.t1.1	Cre12.g551550.t1.1		8092696,8094788,8095194,8095599,8095912,8096164,8096476,8096948,8097614,8098092,8098445,8098741,8099674,8100089,8100451,8101050,8101383,8102100	8094616,8094904,8095309,8095634,8095997,8096231,8096650,8097044,8097688,8098172,8098561,8099415,8099817,8100157,8100558,8101103,8101889,8102817	null-allele mutant was isolated (PMID 29743196)
chr12	9625548	9630819	9626474	9630205	+	PHC60	Cre12.g551552.t1.1		9625548,9626404,9627110,9627603,9628068,9628668,9629664,9630153	9626216,9626816,9627295,9627806,9628438,9629386,9629931,9630819	
chr12	8083196	8091856	8083787	8091363	+	Cre12.g551600.t1.2	Cre12.g551600.t1.2		8083196,8083782,8084102,8084282,8084462,8084666,8085062,8085573,8085930,8086172,8086584,8086925,8087288,8087731,8088050,8088462,8088783,8088992,8089189,8089428,8089687,8090193,8090474,8090853,8091203	8083640,8083897,8084122,8084312,8084488,8084719,8085135,8085711,8086036,8086391,8086647,8087068,8087411,8087788,8088191,8088577,8088845,8089009,8089210,8089517,8089856,8090264,8090642,8091003,8091856	
chr12	8075530	8083025	8076101	8082479	-	Cre12.g551650.t1.2	Cre12.g551650.t1.2		8082654,8082339,8082067,8081595,8081259,8080903,8080420,8080086,8079718,8079328,8078985,8078733,8078438,8078184,8077756,8077433,8077125,8076812,8076497,8075530	8083025,8082484,8082163,8081681,8081312,8080975,8080553,8080149,8079867,8079428,8079035,8078772,8078527,8078226,8077857,8077532,8077253,8076854,8076602,8076324	
chr12	8056257	8071885	8057492	8071661	-	Cre12.g551700.t1.2	Cre12.g551700.t1.2		8071298,8070550,8070113,8069603,8069113,8068351,8067974,8066488,8063600,8056257	8071885,8070878,8070358,8069768,8069234,8068939,8068145,8067678,8063827,8063269	
chr12	8016895	8020155	8017555	8019515	-	Cre12.g551800.t1.2	Cre12.g551800.t1.2		8019462,8019034,8018695,8016895	8020155,8019222,8018799,8018123	
chr12	8022110	8025095	8022577	8024982	-	Cre12.g551801.t1.1	Cre12.g551801.t1.1		8024961,8024674,8024211,8023904,8023408,8023020,8022110	8025095,8024808,8024345,8024018,8023457,8023144,8022728	May contain additional coding sequence PMID: 27175017
chr12	8053190	8055425	8053360	8055232	-	Cre12.g551802.t1.1	Cre12.g551802.t1.1		8055038,8054586,8054043,8053190	8055425,8054679,8054159,8053576	
chr12	8006216	8011987	8006258	8011041	+	NFR1	Cre12.g551850.t1.2		8006216,8006456,8006849,8007112,8007364,8007604,8008560,8009165,8009558,8010084,8010316	8006309,8006590,8006977,8007192,8007459,8008241,8008833,8009250,8009822,8010171,8011987	NADPH-dependent flavin reductase. The human ortholog NR1 (genbank # AF199509) was shown to contain FMN FAD and NADPH cofactors [PMID: 10625700]. The C. elegans ortholog Fre1 (genbank # AY079165) was proposed to participate in responses to DNA damage, heat shock and other stresses [PMID: 12871939]
chr12	8012120	8014985	8013152	8014865	-	Cre12.g551852.t1.1	Cre12.g551852.t1.1		8014852,8013654,8012120	8014985,8014547,8013241	
chr12	8004077	8006118	8004586	8006044	-	Cre12.g551900.t1.2	Cre12.g551900.t1.2		8006005,8005790,8005531,8005312,8005042,8004077	8006118,8005911,8005600,8005356,8005089,8004685	
chr12	8002603	8003857	8002661	8003166	+	CGL38	Cre12.g551950.t1.2		8002603	8003857	
chr12	9631660	9635847	9632951	9635486	-	PHC74	Cre12.g551977.t1.1		9635105,9634042,9633772,9633481,9631660	9635847,9634786,9633856,9633598,9633173	
chr12	7991159	7997808	7991372	7997394	+	Cre12.g552001.t1.2	Cre12.g552001.t1.2		7991159,7991853,7992624,7993253,7993557,7994067,7994486,7994944,7995371,7995755,7996159,7996482,7996923,7997349	7991662,7992312,7992715,7993306,7993646,7994133,7994596,7995109,7995550,7995899,7996245,7996610,7996983,7997808	
chr12	7998209	7999189	7998312	7998903	+	Cre12.g552005.t1.1	Cre12.g552005.t1.1		7998209,7998765	7998537,7999189	
chr12	7999318	8002478	7999678	8001321	-	Cre12.g552006.t1.1	Cre12.g552006.t1.1		8002235,8001528,8000526,8000247,7999958,7999318	8002478,8001938,8001407,8000430,8000095,7999678	
chr12	7999318	8002478	7999678	8001321	-	Cre12.g552006.t2.1	Cre12.g552006.t2.1		8002235,8001528,8000526,8000247,7999958,7999318	8002478,8001794,8001407,8000430,8000095,7999678	
chr12	7999318	8002478	7999678	8001321	-	Cre12.g552006.t3.1	Cre12.g552006.t3.1		8002235,8001528,8000886,8000604,8000247,7999958,7999318	8002478,8001938,8001407,8000791,8000430,8000095,7999678	
chr12	7984667	7991018	7985286	7990714	-	Cre12.g552050.t1.1	Cre12.g552050.t1.1		7990690,7990129,7988840,7987165,7986527,7985850,7984667	7991018,7990458,7989943,7988502,7986728,7986166,7985598	
chr12	7979319	7982752	7979527	7981866	+	Cre12.g552100.t1.1	Cre12.g552100.t1.1		7979319,7979680,7980043,7980330,7980825,7981458,7981797	7979591,7979751,7980201,7980445,7980969,7981588,7982752	
chr12	7967449	7979023	7967646	7977022	+	Cre12.g552150.t1.1	Cre12.g552150.t1.1		7967449,7967807,7967965,7968152,7968511,7968867,7969279,7969799,7970223,7970603,7971447,7972137,7973522,7974321,7974982,7975510,7975952,7976456,7976845	7967711,7967893,7968092,7968354,7968655,7968925,7969524,7969888,7970429,7971064,7971860,7973178,7973709,7974578,7975221,7975623,7976084,7976535,7979023	null-allele mutant was isolated (PMID 29743196)
chr12	7956582	7966526	7957707	7966463	-	STA4	Cre12.g552200.t1.2		7966169,7965771,7965277,7964938,7964515,7963991,7963598,7963219,7962391,7961642,7961226,7960708,7960271,7959866,7959574,7959149,7958787,7958125,7956582	7966526,7966023,7965451,7965060,7964671,7964158,7963715,7963355,7962564,7961770,7961302,7960850,7960413,7959932,7959680,7959398,7958881,7958358,7957896	
chr12	7951503	7956328	7951651	7956168	-	Cre12.g552250.t1.1	Cre12.g552250.t1.1		7956158,7954964,7954617,7953808,7953068,7952742,7951503	7956328,7955950,7954798,7954411,7953723,7952887,7952543	
chr12	7944759	7951496	7945486	7950589	+	CTL3	Cre12.g552300.t1.2		7944759,7945440,7945745,7946037,7946746,7947134,7947485,7947823,7948720,7949192,7949548,7949880,7950295	7945033,7945565,7945844,7946145,7946761,7947273,7947604,7948486,7948897,7949303,7949653,7950067,7951496	Contains a pherophorin domain and a C-terminal C-type lectin domain responsible for carbohydrate binding activity (PMID: 16336259)
chr12	7941173	7943975	7941739	7943843	-	Cre12.g552350.t1.1	Cre12.g552350.t1.1		7943798,7943421,7943112,7942847,7942499,7942294,7941853,7941173	7943975,7943624,7943244,7942913,7942613,7942353,7942050,7941757	
chr12	7936440	7941103	7936481	7939451	+	Cre12.g552400.t1.1	Cre12.g552400.t1.1		7936440,7937057,7937675,7938438,7938940	7936789,7937300,7937869,7938631,7941103	
chr12	9635968	9641118	9636754	9640438	+	Cre12.g552402.t1.1	Cre12.g552402.t1.1		9635968,9636687,9640278	9636478,9640119,9641118	
chr12	7934893	7936348	7935040	7936115	-	Cre12.g552450.t1.2	Cre12.g552450.t1.2		7936013,7935532,7934893	7936348,7935549,7935268	
chr12	7932639	7934879	7932678	7934540	+	Cre12.g552500.t1.2	Cre12.g552500.t1.2		7932639,7932832,7933015,7933486,7933919,7934179	7932738,7932879,7933284,7933608,7933989,7934879	
chr12	7930632	7932518	7931454	7932013	-	Cre12.g552550.t1.1	Cre12.g552550.t1.1		7932173,7930632	7932518,7932060	
chr12	7923369	7930610	7923733	7929991	+	Cre12.g552600.t1.1	Cre12.g552600.t1.1		7923369,7924020,7924301,7924879,7925348,7925677,7926101,7926324,7926880,7927277,7927699,7928177,7928950,7929358,7929790	7923905,7924180,7924554,7924990,7925410,7925765,7926136,7926411,7926994,7927371,7927833,7928362,7929054,7929483,7930610	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr12	7909854	7923248	7910814	7923092	-	PAP8	Cre12.g552650.t1.2		7922982,7922806,7922469,7921981,7921524,7921233,7920726,7920279,7919357,7912792,7909854	7923248,7922896,7922684,7922139,7921655,7921335,7920988,7920389,7920097,7919193,7912647	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; conserved in green algae; predicted organelle-targeted
chr12	7886079	7909850	7886301	7909067	+	Cre12.g552700.t1.1	Cre12.g552700.t1.1		7886079,7886714,7887162,7887700,7888024,7888336,7888603,7889063,7889337,7891326,7892074,7892468,7892932,7893308,7893844,7894243,7894587,7895014,7895403,7898153,7900415,7900721,7901070,7901725,7902292,7902970,7903521,7903932,7904295,7904644,7905110,7906991,7907193,7907594,7908009,7908335,7908587	7886413,7886758,7887389,7887755,7888055,7888387,7888704,7889177,7890922,7891805,7892143,7892651,7893043,7893414,7893952,7894340,7894871,7895186,7897921,7900297,7900567,7900778,7901537,7902098,7902687,7903316,7903657,7904092,7904375,7904810,7906781,7907032,7907365,7907681,7908148,7908383,7909850	
chr12	7881807	7884691	7883212	7884291	-	Cre12.g552750.t1.2	Cre12.g552750.t1.2		7884146,7883799,7881807	7884691,7883932,7883599	
chr12	9641312	9644117	9641987	9643950	-	Cre12.g552827.t1.1	Cre12.g552827.t1.1		9643893,9642656,9641312	9644117,9643624,9642281	
chr12	7863654	7869614	7864045	7869340	-	CGL77	Cre12.g552850.t1.1		7869203,7868569,7868227,7867801,7867342,7866980,7866413,7865909,7865421,7864851,7864488,7864256,7863654	7869614,7868764,7868274,7867941,7867521,7867060,7866586,7866061,7865531,7864950,7864617,7864313,7864102	Conserved protein with unknown function, aminomethyl transferase motif
chr12	7869735	7881135	7869842	7879171	+	OGT1	Cre12.g552851.t1.1		7869735,7870124,7871713,7872308,7872739,7873765,7874298,7875051,7875454,7875916,7876292,7876698,7877126,7877815,7878967	7869932,7871509,7871923,7872477,7872877,7873898,7874553,7875197,7875682,7876067,7876440,7876847,7877354,7878509,7881135	Sequence similarity to O-linked N-acetylglucosamine transferase (OGT) from Arabidopsis (AAL6196); null-allele mutant was isolated (PMID 29743196)
chr12	7860332	7863522	7861164	7863374	-	DOI1	Cre12.g552900.t1.2		7863239,7862908,7862744,7862557,7862061,7861795,7861499,7860332	7863522,7863072,7862802,7862609,7862269,7861920,7861610,7861349	WD protein related to Lis1 controls flagellar power output. Lacks LisH domain; null-allele mutant was isolated (PMID 29743196)
chr12	7851955	7856187	7854024	7855304	+	Cre12.g552950.t1.1	Cre12.g552950.t1.1		7851955,7854015,7854624,7854867,7855287	7852129,7854445,7854650,7854977,7856187	
chr12	7856189	7859524	7857953	7859015	-	Cre12.g552952.t1.1	Cre12.g552952.t1.1		7858921,7858111,7856189	7859524,7858313,7857971	
chr12	7849545	7851906	7849603	7850873	+	Cre12.g553000.t1.2	Cre12.g553000.t1.2		7849545,7850182,7850425,7850856	7850003,7850208,7850535,7851906	
chr12	7846625	7848446	7846716	7848000	+	Cre12.g553050.t1.2	Cre12.g553050.t1.2		7846625,7847153,7847598	7846969,7847304,7848446	
chr12	7848579	7849404	7848812	7849260	-	Cre12.g553052.t1.1	Cre12.g553052.t1.1		7848579	7849404	
chr12	7838799	7846524	7839632	7846399	-	Cre12.g553100.t1.1	Cre12.g553100.t1.1		7846342,7845866,7845370,7845020,7842842,7842465,7842029,7840836,7840037,7838799	7846524,7846156,7845603,7845067,7844899,7842707,7842253,7841799,7840304,7839756	
chr12	7838799	7846524	7839632	7846399	-	Cre12.g553100.t2.1	Cre12.g553100.t2.1		7846342,7845866,7845370,7845020,7842842,7842465,7842029,7840836,7840037,7838799	7846524,7846156,7845603,7845067,7844896,7842707,7842253,7841799,7840304,7839756	
chr12	7825525	7831836	7825694	7831129	+	PFK2	Cre12.g553250.t1.2		7825525,7825976,7826104,7826402,7826742,7827069,7827586,7828062,7828501,7828899,7829430,7829721,7830314,7830663,7831063	7825854,7826027,7826147,7826461,7826887,7827128,7827656,7828175,7828549,7829081,7829507,7829870,7830432,7830849,7831836	Phosphofructokinase family protein (EC 2.7.1.11 or 2.7.1.90), probably plastid targeted
chr12	7835929	7838634	7836373	7837905	-	Cre12.g553252.t1.1	Cre12.g553252.t1.1		7838331,7836606,7835929	7838634,7838215,7836373	
chr12	9644488	9654019	9644738	9653592	+	Cre12.g553253.t1.1	Cre12.g553253.t1.1		9644488,9649078,9649820,9650149,9650373,9650663,9651689,9652064,9652510	9648824,9649605,9649873,9650238,9650402,9651346,9651743,9652183,9654019	
chr12	7822057	7823986	7822436	7823563	+	Cre12.g553300.t1.2	Cre12.g553300.t1.2		7822057,7823563	7823407,7823986	
chr12	7824000	7824894	7824179	7824594	-	Cre12.g553302.t1.1	Cre12.g553302.t1.1		7824000	7824894	
chr12	7819019	7821917	7819762	7821471	-	LCI6	Cre12.g553350.t1.1		7821852,7821676,7821282,7820855,7820584,7820344,7819909,7819019	7821917,7821735,7821485,7821156,7820729,7820459,7820178,7819777	Low CO2 inducible gene, under LCR1 control [PMID: 15155888]
chr12	7815180	7818954	7815208	7817722	+	Cre12.g553400.t2.1	Cre12.g553400.t2.1		7815180,7815353,7815546,7816148,7816351,7816649,7816891,7817174	7815276,7815442,7816035,7816249,7816406,7816780,7817003,7818954	
chr12	7815165	7818954	7815413	7817722	+	Cre12.g553400.t1.1	Cre12.g553400.t1.1		7815165,7815546,7816148,7816351,7816649,7816891,7817174	7815442,7816035,7816249,7816406,7816780,7817003,7818954	
chr12	7815180	7818954	7815714	7817722	+	Cre12.g553400.t3.1	Cre12.g553400.t3.1		7815180,7815353,7815546,7816148,7816351,7816649,7816891,7817174	7815276,7815442,7816035,7816249,7816406,7816780,7817003,7818954	
chr12	7801486	7815024	7803124	7814698	-	CNG1	Cre12.g553450.t1.1		7814632,7814464,7814259,7812321,7811919,7811731,7811194,7810904,7810428,7810135,7809756,7809395,7808899,7808530,7807294,7806948,7804675,7801486	7815024,7814568,7814310,7814016,7812090,7811775,7811450,7811030,7810573,7810228,7809860,7809530,7809059,7808604,7808360,7807137,7806549,7804438	
chr12	7795975	7801282	7796459	7800163	+	ANK15	Cre12.g553500.t1.1		7795975,7796417,7797237,7798002,7798341,7798743,7799563	7796221,7796711,7797734,7798136,7798490,7799222,7801282	protein of unknown function with ankyrin repeats
chr12	7787415	7791808	7787557	7791080	+	Cre12.g553550.t1.2	Cre12.g553550.t1.2		7787415,7787858,7788228,7788598,7788997,7789356,7790423	7787584,7788070,7788385,7788715,7789112,7790082,7791808	
chr12	7792355	7794416	7793133	7793341	+	Cre12.g553552.t1.1	Cre12.g553552.t1.1		7792355	7794416	
chr12	7781091	7787284	7782725	7787162	-	Cre12.g553600.t1.1	Cre12.g553600.t1.1		7787046,7786772,7785592,7784855,7784230,7783662,7783263,7781091	7787284,7786809,7786536,7785243,7784424,7783775,7783361,7782956	
chr12	7772815	7779966	7773320	7779702	+	Cre12.g553650.t1.1	Cre12.g553650.t1.1		7772815,7773282,7773635,7773843,7773995,7774285,7776047,7776542	7773167,7773350,7773657,7773892,7774043,7774438,7776234,7779966	
chr12	7773875	7780967	7774339	7779702	+	Cre12.g553650.t2.1	Cre12.g553650.t2.1		7773875,7773995,7774285,7776047,7776542	7773892,7774043,7774438,7776234,7780967	
chr12	9654040	9656817	9654634	9656732	-	Cre12.g553678.t1.1	Cre12.g553678.t1.1		9656670,9656259,9655779,9655700,9654985,9654040	9656817,9656435,9655847,9655728,9655582,9654634	
chr12	7767473	7770889	7767586	7770010	+	PDO2	Cre12.g553700.t1.2		7767473,7767989,7768461,7768930,7769449,7769940	7767639,7768025,7768618,7769083,7769624,7770889	
chr12	7770919	7772484	7771223	7771476	-	Cre12.g553702.t1.1	Cre12.g553702.t1.1		7772309,7770919	7772484,7771523	
chr12	7757569	7767334	7757867	7767106	-	Cre12.g553750.t1.1	Cre12.g553750.t1.1		7766746,7765887,7764809,7764429,7764119,7763284,7762888,7762386,7761839,7760207,7759018,7757569	7767334,7766045,7764964,7764590,7764212,7763378,7763006,7762548,7761928,7761646,7759944,7758719	Putative splicing factor, zinc finger-containing
chr12	7747115	7757566	7747429	7757154	+	Cre12.g553800.t1.1	Cre12.g553800.t1.1		7747115,7747752,7748011,7748417,7749182,7750225,7750649,7751213,7751640,7751941,7752477	7747545,7747812,7748112,7748941,7749730,7750434,7750774,7751455,7751747,7752114,7757566	
chr12	7735759	7745824	7737316	7745744	-	TUL1	Cre12.g553850.t1.1		7743533,7741798,7739292,7738693,7737783,7735759	7745824,7743268,7741740,7738993,7738496,7737529	Contains conserved tubulin site
chr12	7722062	7735654	7724158	7735218	-	CNG2	Cre12.g553900.t1.1		7735158,7734847,7734412,7733667,7733081,7732552,7732098,7731748,7731270,7730790,7730308,7729056,7728766,7725454,7722062	7735654,7734948,7734475,7733964,7733252,7732596,7732357,7731820,7731463,7730988,7730443,7729216,7728840,7728453,7725253	null-allele mutant was isolated (PMID 29743196)
chr12	7714609	7721274	7715253	7721173	-	Cre12.g553950.t1.1	Cre12.g553950.t1.1		7720988,7720598,7720267,7719265,7718835,7718471,7717593,7717023,7716618,7716402,7716016,7715615,7714609	7721274,7720700,7720339,7719969,7718950,7718580,7718091,7717346,7716719,7716464,7716165,7715755,7715382	
chr12	7701531	7709463	7701870	7707816	+	Cre12.g554050.t1.1	Cre12.g554050.t1.1		7701531,7705457	7705181,7709463	null-allele mutant was isolated (PMID 29743196)
chr12	7710544	7713680	7712328	7713366	-	Cre12.g554051.t1.1	Cre12.g554051.t1.1		7712946,7710544	7713680,7712805	
chr12	7690992	7699950	7691697	7699810	-	Cre12.g554100.t1.1	Cre12.g554100.t1.1		7699766,7699133,7698751,7698501,7697614,7697122,7694588,7694425,7694209,7693935,7693698,7693376,7693088,7692643,7692407,7692117,7690992	7699950,7699337,7698785,7698545,7697687,7697146,7694613,7694460,7694238,7693977,7693750,7693470,7693164,7692904,7692465,7692145,7691783	
chr12	9656928	9661189	9657038	9660537	+	CGL74	Cre12.g554103.t1.1		9656928,9658310,9658636,9659057,9659380,9660163,9660444	9657914,9658413,9658705,9659206,9659787,9660243,9661189	
chr12	6778507	6782752	6781055	6782701	-	Cre12.g554116.t1.1	Cre12.g554116.t1.1		6782626,6782214,6781305,6778507	6782752,6782382,6781962,6781194	
chr12	7686541	7690982	7686987	7690223	+	Cre12.g554150.t1.2	Cre12.g554150.t1.2		7686541,7687571,7687914,7688753,7689178	7687358,7687633,7688228,7688863,7690982	
chr12	7682131	7686367	7682811	7686081	+	VTI4	Cre12.g554200.t1.1		7682131,7682994,7683384,7683713,7684375,7684884,7685269,7686081	7682898,7683074,7683463,7683857,7684497,7684997,7685912,7686367	Expressed Protein. Similar to MEMB1/GS35/Bos1p Qb-SNAREs, involved in ER/Golgi trafficking.
chr12	7673042	7681890	7674261	7681135	-	LPB1	Cre12.g554250.t1.1		7680676,7680272,7679810,7679177,7678668,7678127,7677721,7677319,7676996,7676590,7676193,7675879,7675575,7674969,7673042	7681890,7680434,7679955,7679365,7678850,7678323,7677875,7677486,7677165,7676795,7676328,7675944,7675733,7675361,7674666	gi 63095241 gb AY946347.1; Low Photochemical Bleaching 1 protein, required for survival in Pi-deficiency. Contains a domain similar to nucleotide-diphospho-sugar transferases. PMID: 15849300.
chr12	7668515	7672660	7668898	7672535	-	NSS6	Cre12.g554300.t1.1		7672459,7672243,7671786,7671220,7670837,7670153,7669600,7668515	7672660,7672337,7672152,7671506,7671059,7670322,7669791,7669336	
chr12	7664021	7668392	7664821	7668142	-	Cre12.g554350.t1.2	Cre12.g554350.t1.2		7668015,7667700,7667392,7667118,7666897,7666630,7666313,7665996,7665641,7665178,7664021	7668392,7667821,7667478,7667187,7666976,7666703,7666384,7666095,7665751,7665296,7664921	
chr12	7660861	7663820	7661679	7663653	-	Cre12.g554400.t1.1	Cre12.g554400.t1.1		7663444,7662945,7662579,7662214,7660861	7663820,7663149,7662774,7662350,7662009	
chr12	7656484	7659960	7657144	7659842	-	Cre12.g554450.t1.1	Cre12.g554450.t1.1		7659651,7659223,7658672,7657733,7656484	7659960,7659493,7658795,7657881,7657489	
chr12	7658185	7659960	7658522	7659842	-	Cre12.g554450.t4.1	Cre12.g554450.t4.1		7659651,7659223,7658185	7659960,7659493,7658795	
chr12	7656490	7659960	7657489	7659842	-	Cre12.g554450.t3.1	Cre12.g554450.t3.1		7659651,7659223,7657733,7656490	7659960,7659493,7658795,7657489	
chr12	7656484	7658130	7657144	7658015	-	Cre12.g554450.t2.1	Cre12.g554450.t2.1		7657963,7657733,7656484	7658130,7657881,7657489	
chr12	9661192	9666687	9661346	9666358	-	PPR10	Cre12.g554528.t1.1		9664561,9664072,9663554,9661192	9666687,9664283,9663665,9663140	
chr12	7655051	7656482	7655212	7656244	+	Cre12.g554550.t1.2	Cre12.g554550.t1.2		7655051,7655467,7655708,7656079	7655379,7655517,7655801,7656482	
chr12	7652351	7654950	7652705	7654858	-	CGL146	Cre12.g554600.t1.2		7654656,7654340,7654108,7653907,7653557,7653082,7652351	7654950,7654430,7654208,7653967,7653757,7653291,7652922	
chr12	7645695	7652290	7646098	7652126	-	REC8	Cre12.g554650.t1.2		7652073,7651878,7651659,7651472,7651187,7650795,7650320,7650104,7649748,7649153,7648577,7648028,7647668,7647282,7646999,7646575,7645695	7652290,7651943,7651717,7651516,7651292,7650963,7650506,7650179,7649836,7649605,7649028,7648478,7647935,7647536,7647137,7646813,7646414	RAD21 homolog; forms with SMC1, SMC3 and SCC3/SA/STAG the cohesin complex that holds siter chromatids together during S phase, allowing repair by homologous recombination; closest to Arabidopsis SYN1/DIF1, meiotic isoform
chr12	7643235	7645570	7643564	7645347	-	SEC22	Cre12.g554700.t1.2		7645239,7644929,7644351,7643942,7643235	7645570,7645169,7644497,7644018,7643651	Expressed Protein. Similar to SEC22 R-SNAREs, involved in ER/Golgi trafficking.
chr12	7641441	7643232	7641692	7642893	+	Cre12.g554750.t1.2	Cre12.g554750.t1.2		7641441,7641790,7642228,7642513,7642837	7641695,7641897,7642299,7642555,7643232	
chr12	7636065	7639700	7636792	7639400	-	PRK1	Cre12.g554800.t1.2		7639368,7639194,7638938,7638775,7637796,7637406,7637001,7636065	7639700,7639227,7639007,7638843,7638277,7637568,7637227,7636843	
chr12	7633751	7636062	7633870	7635729	+	TRXH1	Cre12.g554850.t1.2		7633751,7634468,7634714,7635115,7635380,7635596	7633980,7634500,7634777,7635180,7635432,7636062	There are three splicing variants differing on 3' end, one containing an intron in the 3'UTR. The sequenced cDNA (AY184797) derived from strain C9 (obtained from Kazusa DNA research institute) shows 2 amino acid substitutions in the protein sequence compared to AY184797, one of which alters the active site from WCGPC to WCGAC.
chr12	7627441	7630092	7627481	7629453	+	Cre12.g554929.t1.2	Cre12.g554929.t1.2		7627441	7630092	
chr12	9666742	9671107	9667366	9670493	-	ETF2	Cre12.g554953.t1.1		9670424,9669767,9669460,9668735,9668511,9668171,9668017,9666742	9671107,9669829,9669534,9668950,9668537,9668287,9668075,9667574	Putative electron transfer flavoprotein beta-subunit, mitochondrial; the electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase.
chr12	7605521	7611475	7606330	7610528	+	Cre12.g555000.t1.1	Cre12.g555000.t1.1		7605521,7606203,7609815,7610054,7610253,7610477	7605851,7609520,7609954,7610110,7610294,7611475	
chr12	7611555	7627320	7613016	7626903	-	Cre12.g555001.t1.1	Cre12.g555001.t1.1		7627138,7627003,7624060,7619068,7618106,7611555	7627320,7627056,7626908,7623942,7618707,7617875	
chr12	7593955	7604850	7595495	7604433	-	MUS81	Cre12.g555050.t1.1		7604269,7603808,7602627,7602176,7601747,7601358,7599807,7598666,7598320,7597676,7597273,7596500,7596069,7593955	7604850,7603961,7603511,7602340,7601874,7601491,7601044,7599630,7598437,7597842,7597433,7596871,7596124,7595693	homolog of yeast and human MUS81; contains an ERCC4 domain
chr12	7588411	7593307	7589403	7592388	+	Cre12.g555100.t1.2	Cre12.g555100.t1.2		7588411,7589387,7589624,7589741,7590053,7590380,7590716,7590878,7591238,7591706,7591983,7592301	7588929,7589419,7589653,7589943,7590248,7590582,7590738,7591080,7591528,7591814,7592130,7593307	
chr12	7583615	7585850	7584325	7585560	-	NUOB10	Cre12.g555150.t1.2		7585350,7585197,7585077,7583615	7585850,7585265,7585106,7584484	mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 17.8 kDa subunit precursor, homolog to bovine PDSW (PDSW/NDUFB10/NUO12.3)gi 33943529 gb AAQ55459.1  [PMID: 15450959; PMID: 15710684]
chr12	7586925	7587860	7587384	7587757	-	Cre12.g555152.t1.1	Cre12.g555152.t1.1		7586925	7587860	
chr12	7578451	7583612	7578481	7583382	+	Cre12.g555200.t1.1	Cre12.g555200.t1.1		7578451,7578736,7579077,7579275,7579478,7579847,7580302,7580779,7581091,7581535,7581953,7582227,7582597,7583241	7578615,7578785,7579167,7579334,7579586,7580007,7580537,7580840,7581303,7581750,7582081,7582381,7582840,7583612	
chr12	7575795	7578350	7576989	7578190	-	NUOB14	Cre12.g555250.t1.2		7578100,7577839,7577607,7577419,7575795	7578350,7577961,7577648,7577454,7577115	NADH:ubiquinone oxidoreductase Complex I) subunit, homolog to bovine B14. gi 35188009 gb AAQ84469.1  [=NDUFA6] [PMID: 15450959; PMID: 15710684]
chr12	7572651	7575762	7572759	7575738	+	Cre12.g555300.t1.1	Cre12.g555300.t1.1		7572651,7572922,7573333,7573744,7574172,7574532,7574816,7575625	7572789,7573052,7573582,7574059,7574409,7574670,7575524,7575762	
chr12	7570747	7572523	7570895	7572021	+	RER1	Cre12.g555350.t1.2		7570747,7571183,7571545,7571901	7571022,7571345,7571725,7572523	Expressed protein. Conserved protein similar to RER1 proteins involved in ER retention.
chr12	7570747	7572523	7570895	7571938	+	RER1	Cre12.g555350.t2.1		7570747,7571183,7571545,7571899	7571022,7571345,7571725,7572523	Expressed protein. Conserved protein similar to RER1 proteins involved in ER retention.
chr12	9671208	9676379	9671616	9675420	+	Cre12.g555378.t1.1	Cre12.g555378.t1.1		9671208,9673516,9674342,9675207	9673250,9674064,9674822,9676379	
chr12	7568505	7570642	7569302	7570576	-	CGLD32	Cre12.g555400.t1.2		7570268,7569874,7569607,7568505	7570642,7570003,7569663,7569392	
chr12	7566139	7568500	7566225	7567932	+	PMK	Cre12.g555450.t1.2		7566139,7566396,7566550,7566812,7567068,7567279,7567642	7566325,7566451,7566664,7566900,7567123,7567442,7568500	converts 1,3,4,6-InsP4  to 1,3,4,5,6-InsP5; Similar to Inositol Hexaphosphate Kinase H
chr12	7562375	7566020	7563237	7565868	-	Cre12.g555500.t1.2	Cre12.g555500.t1.2		7565744,7565258,7564830,7564595,7564131,7562375	7566020,7565610,7565070,7564672,7564328,7563665	
chr12	7553191	7562372	7553337	7561750	+	Cre12.g555550.t1.2	Cre12.g555550.t1.2		7553191,7553682,7554015,7554433,7554823,7555369,7555787,7556225,7556599,7557016,7557445,7557720,7557982,7558283,7558812,7559202,7559621,7560006,7560523,7560938,7561204,7561606	7553452,7553770,7554049,7554481,7554975,7555468,7555857,7556329,7556679,7557174,7557555,7557792,7558121,7558391,7558894,7559296,7559736,7560202,7560684,7560985,7561332,7562372	
chr12	7547171	7553132	7547297	7552154	+	Cre12.g555600.t1.1	Cre12.g555600.t1.1		7547171,7548607,7549112,7552052	7548255,7548761,7551727,7553132	
chr12	7539945	7547060	7540598	7546795	-	Cre12.g555650.t1.1	Cre12.g555650.t1.1		7545592,7544901,7544453,7543614,7543270,7542795,7542119,7541680,7541029,7539945	7547060,7545186,7544661,7544168,7543339,7542961,7542279,7541971,7541094,7540778	
chr12	7535701	7539932	7536442	7539099	+	DNJ15	Cre12.g555700.t1.1		7535701,7536885,7537177,7537398,7538103,7538573	7536572,7536988,7537281,7537800,7538379,7539932	DnaJ-like protein; perhaps targeted to chloroplast, since it contains N-terminal extension which is predicted by ChloroP to be chloroplast transit peptide; no similarity to other proteins in protein database; contains N-terminal J-domain (pfam226)
chr12	7531525	7535590	7532397	7535348	-	CPK7	Cre12.g555750.t1.2		7535277,7534997,7534804,7534415,7534037,7533753,7533199,7531525	7535590,7535060,7534870,7534516,7534186,7533874,7533378,7532892	
chr12	7527348	7531170	7527478	7530266	+	Cre12.g555800.t1.2	Cre12.g555800.t1.2		7527348,7528046,7528577,7529091,7529541	7527751,7528375,7528894,7529232,7531170	Serine/Threonine Protein Kinase Homolog 2, putative
chr12	9677464	9683817	9679478	9683252	-	NDA6	Cre12.g555803.t1.1		9683148,9682556,9681908,9681484,9681017,9680426,9680122,9677464	9683817,9682640,9681964,9681612,9681220,9680848,9680250,9679862	NADH:quinone reductase (non-electrogenic)
chr12	7525121	7527257	7525522	7526919	+	Cre12.g555850.t1.1	Cre12.g555850.t1.1		7525121,7525777,7526073,7526440,7526781	7525543,7525848,7526197,7526587,7527257	
chr12	7489872	7522397	7490661	7522235	-	DHC11	Cre12.g555950.t1.2		7522166,7521981,7521661,7520829,7520221,7519771,7519196,7518687,7518225,7517965,7517513,7516659,7516124,7515430,7515094,7514660,7514323,7513883,7513411,7512914,7512464,7512095,7511838,7511413,7511104,7510630,7510122,7509639,7509198,7508865,7508480,7507952,7507605,7507292,7506908,7506276,7505914,7505553,7505196,7504712,7504409,7504004,7503686,7503301,7502929,7502511,7501897,7501564,7501210,7500808,7500539,7500264,7499917,7499512,7499039,7498452,7497962,7497591,7497165,7496779,7496336,7495976,7495636,7495297,7494865,7494359,7493927,7493549,7493191,7492642,7492211,7491601,7491043,7489872	7522397,7522076,7521829,7520946,7520671,7520048,7519586,7518860,7518389,7518074,7517795,7517141,7516447,7515819,7515276,7514832,7514461,7513984,7513581,7513165,7512694,7512217,7511954,7511591,7511287,7510911,7510341,7509835,7509344,7509030,7508668,7508176,7507731,7507436,7507071,7506733,7506029,7505705,7505261,7504858,7504563,7504148,7503865,7503478,7503095,7502651,7502167,7501699,7501372,7500939,7500646,7500355,7500046,7499691,7499300,7498717,7498156,7497695,7497294,7496963,7496556,7496082,7495817,7495421,7495003,7494546,7494151,7493705,7493311,7492944,7492464,7491855,7491378,7490844	Novel minor type dynein (monomeric); has not been identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]; homologs found exclusively at the flagellar basal portion
chr12	7522549	7524987	7523111	7524377	-	RFD1	Cre12.g555951.t1.1		7524817,7524603,7524340,7523987,7523658,7522549	7524987,7524715,7524409,7524093,7523735,7523273	Possible bifunctional enzyme of 5-amino-6-(5-phosphoribosylamino)uracil reductase and diaminohydroxyphosphoribosylaminopyrimidine deaminase.  Possible cytosine/CMP/dCMP deaminase
chr12	7484912	7489697	7485591	7489645	-	ECP88	Cre12.g556000.t1.2		7489544,7489310,7488840,7488510,7488222,7487945,7487646,7487200,7486828,7486628,7486203,7484912	7489697,7489411,7489074,7488615,7488334,7488055,7487762,7487340,7486913,7486689,7486414,7485993	extracellular polypeptide Ecp88; induced by sulfur starvation; PMID: 11598240
chr12	7481718	7484906	7481805	7484205	+	PRPL9	Cre12.g556050.t1.2		7481718,7481963,7482282,7483314,7483632,7484118	7481823,7482058,7482332,7483390,7483905,7484906	imported to chloroplast; Chloroplast large ribosomal subunit protein L9
chr12	7473848	7481618	7473947	7481382	+	SPAG1	Cre12.g556100.t1.2		7473848,7474081,7474558,7474973,7475346,7475871,7476230,7477366,7477736,7478172,7478875,7479223,7480418	7474015,7474143,7474770,7475087,7475642,7476070,7476922,7477501,7477970,7478671,7478979,7480184,7481618	
chr12	7470722	7473707	7471115	7473611	-	CGL100	Cre12.g556150.t1.2		7473539,7473315,7473143,7472371,7471731,7470722	7473707,7473444,7473196,7472937,7471924,7471493	Conserved in the Green Lineage
chr12	7464958	7469015	7465034	7466658	+	Cre12.g556200.t1.1	Cre12.g556200.t1.1		7464958,7465181,7465351,7465842,7466216,7466584	7465106,7465234,7465469,7465994,7466319,7469015	
chr12	9684884	9688337	9685458	9688257	-	NDA7	Cre12.g556228.t1.1		9688156,9687886,9687642,9687319,9686800,9686434,9686158,9685842,9684884	9688337,9687970,9687698,9687450,9687034,9686591,9686237,9685890,9685662	NADH:quinone reductase (non-electrogenic)
chr12	7458538	7464891	7458975	7464180	+	Cre12.g556250.t1.2	Cre12.g556250.t1.2		7458538,7458938,7459339,7459646,7460000,7460918,7461232,7461877,7462334,7462675,7462975,7463326,7463712,7464165	7458623,7459108,7459419,7459767,7460080,7461034,7461314,7461975,7462485,7462739,7463135,7463482,7463891,7464891	Homolog of septin molecules used in cytokinesis
chr12	7455182	7458420	7455672	7458324	-	CFAP300	Cre12.g556300.t1.2		7458297,7458151,7457845,7457545,7457087,7456612,7456213,7455984,7455182	7458420,7458203,7457965,7457630,7457186,7456749,7456268,7456063,7455785	Conserved protein found in ciliated organisms; mutations in human ortholog C11orf70 cause PCD with combined loss of Outer and Inner Dynein arms; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation; a soluble, mainly cytoplasmic protein, with flagellar localization dependent on IFT
chr12	7451058	7455179	7451296	7455051	+	Cre12.g556350.t1.1	Cre12.g556350.t1.1		7451058,7451414,7451715,7452064,7452488,7453055,7453348,7454493	7451342,7451517,7451926,7452281,7452888,7453164,7454275,7455179	
chr12	7447380	7450447	7448159	7450308	-	Cre12.g556400.t1.1	Cre12.g556400.t1.1		7450296,7450066,7449888,7449600,7449169,7448756,7447380	7450447,7450197,7449920,7449662,7449297,7448957,7448479	
chr12	7445348	7447227	7445811	7447193	-	Cre12.g556450.t1.1	Cre12.g556450.t1.1		7447106,7446847,7446465,7446040,7445348	7447227,7447040,7446537,7446134,7445833	
chr12	7441388	7445309	7441549	7445081	+	Cre12.g556500.t1.2	Cre12.g556500.t1.2		7441388,7442863,7443246,7443695,7444016,7444276,7444892	7442617,7442959,7443499,7443861,7444070,7444713,7445309	
chr12	7434948	7441227	7435056	7441173	-	Cre12.g556550.t1.1	Cre12.g556550.t1.1		7440144,7439753,7439367,7438778,7438448,7437891,7437359,7437069,7436509,7436085,7435796,7434948	7441227,7439816,7439455,7439205,7438574,7438187,7437757,7437190,7436849,7436227,7435870,7435497	
chr12	7427798	7434906	7427883	7433765	+	GAPN1	Cre12.g556600.t1.2		7427798,7428449,7428906,7430380,7431039,7431736,7432342,7432839,7433363,7433606	7428031,7428609,7429067,7430529,7431165,7431841,7432565,7433026,7433434,7434906	Glyceraldehyde 3-phosphate dehydrogenase, nonphosphorylating, NADP-dependent (EC 1.2.1.9), probably cytosolic; based on similarity to GAPN from Nicotiana plumbaginifolia (Swissprot P93338)
chr12	7420582	7427677	7420959	7427452	-	APC4	Cre12.g556650.t1.2		7427344,7426921,7425880,7425532,7425205,7424865,7424257,7423821,7422632,7422219,7421563,7420582	7427677,7427068,7426652,7425742,7425302,7424981,7424388,7423991,7422961,7422530,7421940,7421322	ts-lethal mutants were isolated (PMID 29743196)
chr12	9690899	9705557	9691437	9705430	-	Cre12.g556653.t1.1	Cre12.g556653.t1.1		9705146,9704857,9704531,9704250,9703978,9703729,9703509,9703138,9702886,9702223,9701930,9701576,9701325,9700669,9700398,9700184,9699818,9699419,9699093,9698752,9698181,9697876,9697097,9690899	9705557,9705011,9704611,9704303,9704076,9703858,9703609,9703354,9702959,9702707,9702046,9701755,9701398,9701108,9700521,9700265,9699901,9699563,9699233,9698848,9698601,9698015,9697620,9696947	
chr12	7413668	7420539	7414383	7419253	+	Cre12.g556700.t1.2	Cre12.g556700.t1.2		7413668,7414832,7415106,7416368,7417258,7418218,7418480	7414427,7414907,7416058,7417033,7417369,7418302,7420539	
chr12	7409648	7413297	7409660	7412887	+	Cre12.g556750.t1.1	Cre12.g556750.t1.1		7409648,7409960,7410538,7411098,7411424,7411825,7412284	7409745,7410095,7410717,7411185,7411611,7411966,7413297	
chr12	7395568	7399519	7396508	7399158	+	Cre12.g556800.t1.1	Cre12.g556800.t1.1		7395568,7396491,7396921,7397330,7397604,7397889,7398207,7398807	7396308,7396744,7397002,7397373,7397662,7397911,7398284,7399519	
chr12	7399568	7403719	7399598	7403429	+	Cre12.g556802.t1.1	Cre12.g556802.t1.1		7399568,7399898,7400476,7401036,7401362,7401763,7403388	7399683,7400033,7400655,7401123,7401549,7401908,7403719	
chr12	7406068	7409599	7406361	7409220	+	Cre12.g556803.t1.1	Cre12.g556803.t1.1		7406068,7406553,7406983,7407392,7407666,7407951,7408269,7408869	7406370,7406806,7407064,7407435,7407751,7407973,7408346,7409599	
chr12	7406068	7409599	7406361	7409220	+	Cre12.g556803.t2.1	Cre12.g556803.t2.1		7406068,7406553,7406983,7407392,7407666,7407951,7408269,7408869	7406370,7406806,7407064,7407435,7407724,7407973,7408346,7409599	
chr12	7371038	7374665	7371069	7374199	+	Cre12.g556905.t1.2	Cre12.g556905.t1.2		7371038,7371473,7373062	7371156,7372834,7374665	
chr12	7374728	7386869	7374801	7386219	+	Cre12.g556911.t1.1	Cre12.g556911.t1.1		7374728,7374905,7375222,7376086,7376833,7377343,7377680,7378349,7378712,7379069,7379367,7379925,7381136,7381453,7382102,7382622,7383185,7383405,7383934,7384453,7384813,7385434,7385851	7374812,7374947,7375373,7376175,7376917,7377405,7377736,7378471,7378744,7379169,7379455,7379959,7381279,7381581,7382190,7382787,7383244,7383609,7384153,7384632,7385141,7385586,7386869	
chr12	7386872	7395467	7387298	7394953	-	Cre12.g556912.t1.1	Cre12.g556912.t1.1		7393960,7392267,7390608,7388949,7386872	7395467,7392819,7391160,7389501,7387298	
chr12	7392392	7395467	7392819	7394953	-	Cre12.g556912.t3.1	Cre12.g556912.t3.1		7393960,7392392	7395467,7392819	
chr12	7386872	7395637	7387298	7394953	-	Cre12.g556912.t2.1	Cre12.g556912.t2.1		7393960,7392267,7390608,7388949,7386872	7395637,7392819,7391160,7389501,7387298	
chr12	7391433	7392337	7391626	7391837	-	Cre12.g556913.t1.1	Cre12.g556913.t1.1		7391433	7392337	
chr12	7362882	7370547	7363284	7370361	-	Cre12.g556950.t1.2	Cre12.g556950.t1.2		7370268,7369709,7369206,7368488,7367968,7367283,7366406,7362882	7370547,7369960,7369327,7368833,7368093,7367495,7366930,7366098	
chr12	7360998	7362879	7361069	7362089	+	ATG12	Cre12.g557000.t1.2		7360998,7361158,7361307,7361617,7362029	7361094,7361216,7361375,7361679,7362879	Ubiquitin-like modifier involved in autophagy; conjugated to Atg5 to form a complex involved in Atg8 lipidation; Atg5-Atg12 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site, also forms a complex with Atg16; the Atg5-Atg12/Atg16 complex binds to membranes and is essential for autophagosome formation
chr12	7356298	7360951	7356312	7360069	+	YGG2	Cre12.g557050.t1.2		7356298,7356976,7357480,7357760,7359859	7356443,7357092,7357563,7357859,7360951	
chr12	9705738	9712957	9706079	9711434	+	Cre12.g557078.t1.1	Cre12.g557078.t1.1		9705738,9706632,9707457,9708073,9708534,9708985,9709601,9709834,9710369,9710870	9706282,9707057,9707880,9708222,9708638,9709263,9709666,9709980,9710659,9712957	
chr12	7350412	7356167	7352415	7355426	-	Cre12.g557100.t1.2	Cre12.g557100.t1.2		7355371,7354659,7354168,7353555,7353158,7352842,7350412	7356167,7354753,7354269,7353791,7353307,7352906,7352608	
chr12	7337841	7343614	7338433	7343156	-	Cre12.g557250.t1.2	Cre12.g557250.t1.2		7343069,7342915,7342338,7341940,7341535,7341245,7340956,7340536,7340270,7340035,7339741,7339415,7339064,7338755,7337841	7343614,7342971,7342490,7342069,7341614,7341323,7341062,7340674,7340294,7340113,7339874,7339559,7339129,7338806,7338459	
chr12	7337841	7343374	7338433	7343156	-	Cre12.g557250.t2.1	Cre12.g557250.t2.1		7343069,7342915,7342338,7341940,7341535,7341245,7340956,7340536,7340270,7340035,7339741,7339415,7339064,7338755,7337841	7343374,7342971,7342490,7342069,7341614,7341323,7341062,7340674,7340294,7340113,7339874,7339559,7339129,7338806,7338459	
chr12	7345258	7350409	7345964	7349665	+	Cre12.g557252.t1.1	Cre12.g557252.t1.1		7345258,7346300,7346773,7347083,7347733,7348135,7348459,7348996,7349535	7345998,7346515,7346843,7347151,7347822,7348226,7348567,7349195,7350409	
chr12	7330581	7337724	7331897	7337135	-	Cre12.g557300.t1.1	Cre12.g557300.t1.1		7336964,7336715,7336532,7333872,7333175,7330581	7337724,7336819,7336608,7336419,7333744,7333007	Basic-leucine zipper (bZIP) transcription factor, probably responds to cAMP
chr12	7323249	7330534	7324038	7330493	-	Cre12.g557350.t1.2	Cre12.g557350.t1.2		7330433,7329927,7329587,7329245,7328832,7328436,7328089,7327649,7327246,7326830,7326389,7326021,7325586,7325004,7324522,7323249	7330534,7330071,7329673,7329375,7329059,7328595,7328191,7327748,7327389,7326943,7326484,7326159,7325692,7325144,7324640,7324231	FAD-dependent oxidoreductase, contains a Rieske [2Fe-2S] iron-sulphur domain; possible sarcosine oxidase or plastoquinol-plastocyanin reductase
chr12	7316899	7323164	7317294	7323083	-	Cre12.g557400.t1.2	Cre12.g557400.t1.2		7322944,7322596,7322102,7320725,7319118,7318770,7318350,7316899	7323164,7322735,7322308,7321845,7320045,7318883,7318556,7318188	
chr12	7312459	7316814	7313426	7316787	-	Cre12.g557450.t1.2	Cre12.g557450.t1.2		7316484,7315568,7313907,7312459	7316814,7316165,7315246,7313426	
chr12	7298117	7311804	7299880	7311694	-	Cre12.g557500.t1.1	Cre12.g557500.t1.1		7311601,7311307,7310895,7310477,7310010,7309424,7308548,7308275,7307957,7303624,7303163,7302865,7302477,7302035,7301509,7300689,7300331,7298117	7311804,7311435,7311059,7310609,7310344,7309804,7308681,7308393,7308120,7306353,7303320,7302887,7302613,7302235,7301867,7301135,7300445,7300024	
chr12	9718248	9723577	9719368	9723436	-	Cre12.g557503.t1.1	Cre12.g557503.t1.1		9723261,9722946,9722356,9721761,9721213,9720815,9720308,9719806,9718248	9723577,9723005,9722540,9721901,9721395,9720970,9720379,9719936,9719420	
chr12	9718248	9723577	9719368	9723436	-	Cre12.g557503.t2.1	Cre12.g557503.t2.1		9723261,9722946,9722356,9721213,9720815,9720308,9719806,9718248	9723577,9723005,9722540,9721395,9720970,9720379,9719936,9719420	
chr12	7293865	7297956	7293930	7297304	+	ADK4	Cre12.g557600.t1.1		7293865,7294205,7294633,7295078,7295895,7296805,7297262	7294033,7294329,7294764,7295161,7295969,7296966,7297956	single domain adenylate kinase
chr12	7288029	7293754	7288138	7293684	-	Cre12.g557650.t1.1	Cre12.g557650.t1.1		7293618,7293436,7291811,7291544,7290285,7288029	7293754,7293540,7293333,7291643,7291255,7290071	
chr12	7283205	7288026	7283787	7287336	+	Cre12.g557700.t1.2	Cre12.g557700.t1.2		7283205,7283412,7283583,7284284,7285822,7286307,7286880,7287177	7283309,7283457,7283966,7284428,7285939,7286448,7286955,7288026	null-allele passenger mutation was isolated (PMID 29743196)
chr12	7279129	7283104	7280250	7283033	-	DGTT1	Cre12.g557750.t1.1		7282890,7282694,7282331,7281691,7281400,7280978,7280587,7279129	7283104,7282768,7282506,7281811,7281478,7281117,7280715,7280383	
chr12	7277015	7279020	7277169	7278455	+	Cre12.g557800.t1.2	Cre12.g557800.t1.2		7277015,7277249,7277376,7277551,7277993,7278341	7277172,7277299,7277428,7277615,7278084,7279020	
chr12	7270885	7276906	7270994	7275742	+	Cre12.g557850.t1.1	Cre12.g557850.t1.1		7270885,7271265,7271799,7273046,7273882,7274500,7274900,7275434	7271093,7271486,7272857,7273551,7274224,7274646,7275107,7276906	
chr12	7268693	7270774	7269251	7270717	-	CDI1	Cre12.g557900.t1.2		7270581,7270398,7270264,7269817,7269424,7268693	7270774,7270481,7270326,7270032,7269562,7269270	Probable 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase (EC 5.3.3.5) (C-8,7 sterol isomerase) (Cholesterol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) (EBP)
chr12	9723627	9725337	9724107	9725221	-	Cre12.g557928.t1.1	Cre12.g557928.t1.1		9725077,9724891,9724464,9723627	9725337,9724932,9724672,9724186	
chr12	7265709	7268644	7266048	7268541	-	DNJ27	Cre12.g557950.t1.2		7268409,7268126,7267854,7267525,7267038,7266451,7265709	7268644,7268327,7267931,7267598,7267160,7266648,7266126	DnaJ-like protein, presumably cytosolic since homolog in Arabidopsis (Q9C58) is weakly predicted by TargetP to be cytosolic; contains N-terminal J-domain (pfam226)
chr12	7263751	7265263	7263792	7264826	+	MRPS6	Cre12.g558000.t1.1		7263751,7264826	7264285,7265263	
chr12	7262055	7263443	7262160	7262804	+	Cre12.g558050.t1.2	Cre12.g558050.t1.2		7262055,7262332,7262735	7262262,7262388,7263443	
chr12	7256625	7261955	7256792	7261122	+	PRMT2	Cre12.g558100.t1.2		7256625,7257315,7257575,7257959,7258357,7258732,7259538,7260036,7260447,7260913	7256903,7257359,7257610,7258090,7258416,7258914,7259591,7260194,7260594,7261955	Protein arginine N-methyltransferase, ChromDB PRMT3402
chr12	7254675	7256566	7254760	7255993	+	Cre12.g558150.t1.2	Cre12.g558150.t1.2		7254675,7254926,7255501,7255936	7254845,7255089,7255674,7256566	
chr12	7247425	7254600	7247570	7254315	+	Cre12.g558200.t1.1	Cre12.g558200.t1.1		7247425,7248009,7248209,7248411,7248695,7251452	7247847,7248088,7248262,7248567,7251326,7254600	
chr12	7236119	7247324	7236974	7247159	-	SNR7	Cre12.g558250.t1.1		7247012,7246798,7246507,7246178,7245842,7245406,7244956,7244446,7243960,7243515,7243038,7242711,7242179,7241684,7241357,7241108,7240666,7239945,7239581,7239322,7238912,7238475,7238031,7237632,7237333,7236119	7247324,7246938,7246584,7246343,7245962,7245615,7245097,7244686,7244113,7243690,7243341,7242819,7242410,7242024,7241459,7241166,7240851,7240128,7239678,7239406,7239075,7238640,7238277,7237810,7237480,7237152	Hypothetical Conserved Protein. Similar to At5g05570/Tomosyn, proteins that contain a C-terminal R-SNARE domain, but acts as regulator of SNARE assembly rather than as part of a SNARE complex.
chr12	7230139	7234894	7230155	7234432	-	Cre12.g558300.t1.1	Cre12.g558300.t1.1		7233970,7233808,7233286,7232113,7231848,7231552,7231351,7230139	7234894,7233864,7233362,7233151,7231895,7231723,7231410,7231201	
chr12	7221455	7225547	7222248	7223283	+	Cre12.g558350.t1.2	Cre12.g558350.t1.2		7221455,7222911	7222260,7225547	
chr12	7226232	7230074	7229100	7229290	-	Cre12.g558352.t1.1	Cre12.g558352.t1.1		7226232	7230074	
chr12	9725402	9730559	9725956	9730559	-	Cre12.g558353.t1.1	Cre12.g558353.t1.1		9730425,9730024,9729653,9729301,9728745,9725402	9730559,9730091,9729798,9729410,9728927,9728269	
chr12	7215985	7221261	7216100	7220750	+	Cre12.g558400.t1.1	Cre12.g558400.t1.1		7215985,7217368,7217695,7218109,7218641,7219108,7219601,7219842,7220168,7220507	7216166,7217461,7217839,7218309,7218788,7219275,7219684,7219924,7220291,7221261	modifies tRNAs for Asn, Asp, His, and Tyr with hypermodified base, queuine, at position 34 (the first/wobble posiition of the anticodon).  Possibly chloroplastic
chr12	7209381	7215854	7210568	7215768	-	SPD1	Cre12.g558450.t1.2		7215732,7215348,7215077,7214285,7213969,7213593,7213124,7212247,7211845,7209381	7215854,7215452,7215128,7214361,7214075,7213629,7213270,7212303,7211967,7210784	involved in polyamine biosynthesis; converts putrescine to spermidine by addition of an aminopropyl group derived from decarboxylated S-adenosyl Met
chr12	7189692	7199604	7191072	7199099	-	Cre12.g558526.t1.1	Cre12.g558526.t1.1		7199210,7198343,7197766,7197012,7196553,7195566,7195066,7194177,7193952,7193501,7193130,7192971,7192675,7192383,7191689,7189692	7199604,7199119,7198094,7197606,7196774,7196104,7195304,7194886,7194062,7193735,7193251,7193023,7192748,7192525,7192216,7191534	
chr12	7185365	7189634	7185424	7188417	+	CPLD60	Cre12.g558550.t1.2		7185365,7185856,7186161,7186592,7186909,7187437,7187906,7188300	7185555,7185897,7186429,7186654,7187039,7187578,7188063,7189634	Conserved in the Plant Lineage and Diatoms
chr12	7182275	7185310	7182805	7184856	+	Cre12.g558600.t1.2	Cre12.g558600.t1.2		7182275,7183092,7184055,7184430,7184718	7182920,7183920,7184253,7184591,7185310	
chr12	7177615	7181797	7177714	7181295	+	EIF2BD	Cre12.g558650.t1.1		7177615,7178016,7178284,7178537,7178895,7179899,7180226,7180773,7181124	7177858,7178075,7178332,7178698,7179658,7180099,7180522,7181000,7181797	putative Eukaryotic translation initiation factor 2B subunit 4 (EIF-2B GDP-GTP EXCHANGE FACTOR)
chr12	7173910	7177514	7174905	7177436	-	FAP67	Cre12.g558700.t1.2		7177325,7177044,7176744,7176456,7176036,7175532,7173910	7177514,7177144,7176809,7176539,7176222,7175822,7175208	Found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG5 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]; Similar to Nucleoside Diphosphate Kinase. Mouse mutation has situs inversus and hydrocephaly
chr12	7171960	7173695	7172625	7173463	-	Cre12.g558750.t1.2	Cre12.g558750.t1.2		7173304,7173058,7171960	7173695,7173131,7172764	
chr12	7163756	7171947	7164216	7171019	+	Cre12.g558800.t1.1	Cre12.g558800.t1.1		7163756,7164465,7164895,7165389,7166530,7167338,7167639,7169650,7170263	7164319,7164690,7165256,7166372,7166945,7167468,7169374,7170047,7171947	
chr12	7161866	7163615	7162527	7163478	-	Cre12.g558850.t1.2	Cre12.g558850.t1.2		7163346,7163157,7161866	7163615,7163223,7162775	
chr12	7159595	7161857	7159629	7161221	+	PETO	Cre12.g558900.t1.2		7159595,7159916,7160212,7160643,7160925,7161164	7159708,7160022,7160386,7160731,7161014,7161857	Initially described as Cytochrome b6f complex subunit V, but not present in the purified complex; involved in cyclic electron tranfer; chloroplast precursor; ortholog in Volvox is germline-specific and a putative target of RegA repression
chr12	7151838	7159085	7152467	7158031	-	Cre12.g558950.t1.1	Cre12.g558950.t1.1		7158288,7158144,7157950,7157509,7156495,7156185,7155861,7155530,7155164,7154678,7154252,7153964,7153585,7153359,7153085,7152857,7151838	7159085,7158175,7158034,7157784,7157284,7156286,7155946,7155640,7155301,7154947,7154461,7154020,7153665,7153437,7153138,7152935,7152618	
chr12	7144996	7149867	7145053	7149225	+	Cre12.g559000.t1.1	Cre12.g559000.t1.1		7144996,7145523,7146453,7146774,7147027,7147280,7147430,7147564,7147795,7148091,7148474,7148734,7148916	7145246,7145546,7146638,7146821,7147186,7147307,7147486,7147637,7147966,7148342,7148584,7148808,7149867	
chr12	7144996	7149867	7145053	7149225	+	Cre12.g559000.t2.1	Cre12.g559000.t2.1		7144996,7145523,7146453,7147027,7147280,7147430,7147564,7147795,7148091,7148474,7148734,7148916	7145246,7145546,7146638,7147186,7147307,7147486,7147637,7147966,7148342,7148584,7148808,7149867	
chr12	7134156	7139977	7134332	7139626	+	Cre12.g559050.t1.2	Cre12.g559050.t1.2		7134156,7134585,7134877,7135266,7135774,7136123,7136510,7136896,7137274,7137869,7138486,7138971	7134431,7134659,7134913,7135426,7135821,7136232,7136666,7136999,7137379,7138084,7138664,7139977	null-allele passenger mutation was isolated (PMID 29743196)
chr12	7139990	7140925	7140158	7140609	-	CSB50	Cre12.g559053.t1.1		7140591,7140397,7139990	7140925,7140507,7140281	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr12	7143620	7144885	7144628	7144818	-	Cre12.g559054.t1.1	Cre12.g559054.t1.1		7143620	7144885	
chr12	7131110	7132545	7131187	7132428	-	Cre12.g559100.t1.2	Cre12.g559100.t1.2		7132266,7132051,7131810,7131565,7131110	7132545,7132135,7131871,7131615,7131397	
chr12	7128646	7131107	7128714	7129887	+	CLPS2	Cre12.g559150.t1.2		7128646,7129261,7129680	7128826,7129451,7131107	Probably chloroplastic; homologous to E. coli ClpS [PMID: 11931773] and to At1g68660 [PMID: 12576022], but not to the plant-specific ClpT subunits of the ClpP complex (initially called ClpS; PMID: 14593120)
chr12	7115730	7128515	7116163	7128367	-	Cre12.g559200.t1.1	Cre12.g559200.t1.1		7128244,7126160,7125747,7125088,7124408,7124137,7123628,7123153,7122403,7121751,7120384,7119832,7119525,7119272,7118893,7118485,7118083,7116709,7115730	7128515,7128163,7125997,7125578,7124939,7124275,7123825,7123500,7122951,7121933,7121520,7120128,7119649,7119400,7119049,7118714,7118286,7117928,7116402	
chr12	7112886	7115726	7113368	7115131	+	FTT1	Cre12.g559250.t1.2		7112886,7113766,7114085,7114289,7115068	7113641,7113969,7114207,7114405,7115726	Fourteen-three-three (FTT) 14-3-3-like protein GF14 nu (General regulatory factor 7) [Arabidopsis thaliana]: Found in the flagellar proteome [PMID: 15998802]; PLA1 (3.1.1.4 Phospholipase A2)
chr12	7100696	7111927	7100770	7111379	+	ARM1	Cre12.g559300.t1.2		7100696,7100954,7101163,7101576,7102109,7102623,7103568,7104739,7105310,7105809,7106209,7107204,7108896,7109289,7109815,7110420,7110895	7100862,7101067,7101230,7101636,7102252,7103055,7104176,7104936,7105432,7105901,7106382,7107322,7109042,7109388,7109952,7110484,7111927	Protein of unknown function, containing armadillo repeat; identified by comparative genomics as being present only in organisms having motile (MOT) cilia; May contain additional coding sequence in intronic N-island PMID: 27175017
chr12	7095850	7100585	7096584	7100377	-	Cre12.g559350.t1.2	Cre12.g559350.t1.2		7100313,7099814,7099389,7099027,7098134,7097491,7097016,7095850	7100585,7100031,7099430,7099128,7098241,7097547,7097191,7096744	
chr12	7084930	7095645	7086057	7095242	-	PDE12	Cre12.g559400.t1.1		7095119,7094776,7094232,7093739,7093256,7092726,7092273,7091766,7091250,7088926,7088592,7088159,7087772,7087224,7086608,7084930	7095645,7094904,7094396,7093850,7093533,7093028,7092406,7091881,7091413,7091088,7088749,7088321,7087972,7087525,7086982,7086373	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain
chr12	7074566	7084927	7074673	7083786	+	Cre12.g559450.t1.1	Cre12.g559450.t1.1		7074566,7074958,7075567,7075877,7076386,7076763,7077557,7077928,7078490,7079589,7079953,7080296,7080561,7081093,7081512,7082009,7082437,7082940,7083438,7083714	7074736,7075134,7075641,7075933,7076451,7076897,7077652,7078065,7078666,7079654,7080012,7080367,7080887,7081137,7081634,7082122,7082529,7083002,7083524,7084927	May contain additional coding sequence in intronic N-island PMID: 27175017
chr12	7064679	7066315	7065085	7065868	+	Cre12.g559550.t1.2	Cre12.g559550.t1.2		7064679,7064876,7065085,7065652	7064796,7064967,7065289,7066315	
chr12	7066340	7066865	7066418	7066836	-	Cre12.g559553.t1.1	Cre12.g559553.t1.1		7066340	7066865	
chr12	7067246	7068117	7067315	7067858	+	Cre12.g559554.t1.1	Cre12.g559554.t1.1		7067246,7067606	7067375,7068117	
chr12	7068130	7074415	7069194	7074023	-	Cre12.g559555.t1.1	Cre12.g559555.t1.1		7074250,7073085,7072754,7072189,7071859,7071468,7070352,7069738,7068130	7074415,7074042,7072867,7072572,7071928,7071627,7070475,7070068,7069539	
chr12	7057373	7059398	7057675	7058770	+	Cre12.g559600.t1.1	Cre12.g559600.t1.1		7057373,7057614,7057986,7058361,7058629	7057473,7057852,7058180,7058432,7059398	
chr12	7018990	7020717	7019468	7020284	+	Cre12.g559700.t1.1	Cre12.g559700.t1.1		7018990,7019194,7019468,7020035	7019107,7019285,7019672,7020717	
chr12	7018990	7021697	7019468	7021428	+	Cre12.g559700.t2.1	Cre12.g559700.t2.1		7018990,7019194,7019468,7021212	7019107,7019285,7019672,7021697	
chr12	7020766	7021697	7020990	7021428	+	Cre12.g559700.t3.1	Cre12.g559700.t3.1		7020766,7021212	7021029,7021697	
chr12	7026408	7027935	7027664	7027866	-	Cre12.g559703.t1.1	Cre12.g559703.t1.1		7026408	7027935	
chr12	7054736	7057265	7056799	7057022	-	Cre12.g559704.t1.1	Cre12.g559704.t1.1		7054736	7057265	
chr12	7014144	7017935	7015551	7017662	-	PRL2	Cre12.g559750.t1.2		7017613,7017492,7016761,7016042,7014144	7017935,7017534,7017341,7016462,7015801	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr12	7010766	7013714	7010908	7013103	+	Cre12.g559800.t1.2	Cre12.g559800.t1.2		7010766,7011058,7011540,7011901,7012233,7012754,7013066	7010976,7011102,7011596,7011997,7012308,7012826,7013714	Glutathione S-transferase, membrane-associated (may be microsomal)
chr12	7005260	7010655	7006338	7010426	-	Cre12.g559850.t1.1	Cre12.g559850.t1.1		7010297,7009915,7009226,7008771,7008291,7007750,7007249,7005260	7010655,7009960,7009406,7008834,7008413,7007910,7007436,7006490	
chr12	7003548	7005259	7003852	7005228	+	Cre12.g559900.t1.1	Cre12.g559900.t1.1		7003548,7004118,7004689,7005117	7003939,7004430,7004993,7005259	
chr12	7000392	7003417	7001397	7003295	-	MFDX	Cre12.g559950.t1.2		7003134,7002943,7002660,7002214,7000392	7003417,7003049,7002709,7002296,7001512	possibly mitochondrial
chr12	6988928	7000309	6989249	6999798	+	Cre12.g560000.t1.1	Cre12.g560000.t1.1		6988928,6990429,6991481,6992177,6992537,6993019,6993566,6994589,6997010,6997438,6997763,6999177	6990269,6991230,6991931,6992426,6992755,6993267,6994416,6996845,6997195,6997554,6999031,7000309	
chr12	6972732	6988807	6972956	6988712	-	ERM12	Cre12.g560050.t1.1		6988563,6988026,6987787,6986773,6986420,6986104,6985637,6985358,6981266,6979765,6979129,6978771,6978251,6977785,6977228,6976811,6976391,6976031,6975273,6973550,6972732	6988807,6988216,6987851,6987542,6986507,6986209,6985802,6985410,6985157,6980662,6979407,6978955,6978377,6977877,6977437,6976960,6976556,6976170,6975421,6974734,6973143	transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration)
chr12	6972002	6972657	6972027	6972600	-	Cre12.g560100.t1.1	Cre12.g560100.t1.1		6972526,6972346,6972128,6972002	6972657,6972458,6972249,6972042	
chr12	6969178	6971999	6969319	6971044	+	FAP353	Cre12.g560150.t1.2		6969178,6969430,6969535,6969665,6969801,6969945,6970157,6970438,6970947	6969333,6969445,6969591,6969712,6969848,6970016,6970312,6970541,6971999	Similar to RabD/Rab1-type GTPases. Identical to YPTC1 [gi 2500073 sp Q39571 YPT1_CHLRE]. Found in the flagellar proteome [PMID: 15998802]
chr12	6965868	6968630	6965957	6967900	+	Cre12.g560200.t1.2	Cre12.g560200.t1.2		6965868,6966099,6966466,6966647,6966891,6967307,6967879	6966012,6966161,6966519,6966714,6966952,6967430,6968630	Related to GCN5, a histone acetyltransferase
chr12	6959770	6965767	6960436	6965712	-	Cre12.g560250.t1.2	Cre12.g560250.t1.2		6964871,6964032,6963684,6963092,6962745,6962241,6961232,6959770	6965767,6964217,6963844,6963224,6962848,6962410,6961295,6960907	
chr12	6955528	6959631	6955889	6958035	+	Cre12.g560300.t1.2	Cre12.g560300.t1.2		6955528,6956002,6956139,6956269,6956458,6956636,6957058,6957485,6957719,6957983	6955921,6956054,6956185,6956385,6956554,6956726,6957302,6957547,6957845,6959631	
chr12	6955528	6959631	6955889	6958035	+	Cre12.g560300.t2.1	Cre12.g560300.t2.1		6955528,6956002,6956139,6956269,6956458,6956636,6957058,6957485,6957719,6957983	6955921,6956054,6956185,6956385,6956554,6956726,6957302,6957538,6957845,6959631	
chr12	6955528	6959631	6955889	6958035	+	Cre12.g560300.t3.1	Cre12.g560300.t3.1		6955528,6956002,6956139,6956269,6956458,6956636,6957058,6957485,6957719,6957983	6955921,6956054,6956185,6956385,6956554,6956726,6957302,6957532,6957845,6959631	
chr12	6949219	6955419	6949893	6954860	+	CNK2	Cre12.g560350.t1.1		6949219,6949755,6950236,6950742,6951380,6951857,6952101,6952464,6952918,6953520,6954585	6949363,6949967,6950308,6950893,6951440,6951905,6952212,6952608,6953130,6954336,6955419	NimA related kinase homolog 2 [gi:34334393, PMID: 15068267, 16030138]. Found in the flagellar proteome [PMID: 15998802]
chr12	6949219	6955419	6949893	6954860	+	CNK2	Cre12.g560350.t2.1		6949219,6949755,6950236,6950742,6951380,6951857,6952101,6952464,6952918,6953520,6954594	6949363,6949967,6950308,6950893,6951440,6951905,6952212,6952608,6953130,6954336,6955419	NimA related kinase homolog 2 [gi:34334393, PMID: 15068267, 16030138]. Found in the flagellar proteome [PMID: 15998802]
chr12	6943972	6949077	6944335	6948833	-	DNJ16	Cre12.g560400.t1.1		6948729,6947890,6947477,6946758,6946368,6946083,6945815,6945524,6945226,6944838,6943972	6949077,6948565,6947524,6946905,6946444,6946169,6945893,6945573,6945366,6944951,6944485	DnaJ-like protein; contains N-terminal K homology RNA-binding domain, type I (cd15) and C-terminal J-domain (pfam226)
chr12	6933818	6943952	6933880	6943562	+	Cre12.g560450.t1.1	Cre12.g560450.t1.1		6933818,6934113,6934281,6934492,6935240,6935538,6935772,6936887,6937181,6938089,6941175,6941654,6942067,6942854,6943373	6933928,6934214,6934337,6935067,6935401,6935654,6936746,6936997,6937900,6940971,6941465,6941800,6942605,6943127,6943952	
chr12	6931608	6933768	6931698	6933461	+	Cre12.g560500.t1.2	Cre12.g560500.t1.2		6931608,6932036,6932707,6933196	6931752,6932475,6932952,6933768	
chr12	6927458	6931025	6927701	6930567	+	MTF1	Cre12.g560550.t1.1		6927458,6928044,6928259,6928584,6929018,6929440,6929777,6929960,6930274	6927860,6928106,6928402,6928757,6929098,6929568,6929806,6930086,6931025	Putative methionyl-tRNA formyltransferase (methionyl-tRNA transformylase [MTF]). Probably localised in the chloroplast rather than the mitochondrion.
chr12	6918962	6927317	6919970	6927258	-	Cre12.g560600.t1.1	Cre12.g560600.t1.1		6927215,6927041,6926823,6926564,6925813,6922339,6921944,6921311,6920828,6920392,6918962	6927317,6927137,6926927,6926709,6926472,6925551,6922087,6921651,6920998,6920448,6920123	
chr12	6912982	6918897	6913249	6918789	-	Cre12.g560650.t1.1	Cre12.g560650.t1.1		6918655,6918376,6917887,6917318,6916872,6916666,6916003,6915550,6914852,6914341,6912982	6918897,6918453,6918221,6917755,6917143,6916805,6916516,6915846,6915295,6914631,6914194	
chr12	6901583	6912147	6904010	6911808	-	Cre12.g560668.t1.2	Cre12.g560668.t1.2		6911785,6911608,6911415,6911095,6910896,6910363,6910000,6909669,6909467,6908857,6901583	6912147,6911681,6911443,6911160,6910937,6910491,6910177,6909706,6909524,6909302,6908735	null-allele mutant was isolated (PMID 29743196)
chr12	6896958	6900729	6896987	6900138	+	CDJ6	Cre12.g560700.t1.1		6896958,6897674,6898352,6898760,6899213,6899749	6897266,6898126,6898545,6898910,6899354,6900729	DnaJ-like protein; probably targeted to chloroplast, as judged from presence of N-ter extension and from homology to Synechococcus elongatus Q8DKR7 and rice Q6K85 (predicted by TargetP to be chloroplast-targeted); contains N-terminal J-domain (pfam226)
chr12	6893082	6896847	6893569	6896762	-	Cre12.g560750.t1.1	Cre12.g560750.t1.1		6896510,6896196,6895885,6895546,6895094,6894688,6893082	6896847,6896347,6895942,6895644,6895287,6894880,6894310	
chr12	6889178	6893078	6889308	6892226	+	Cre12.g560800.t1.2	Cre12.g560800.t1.2		6889178,6889574,6889941,6890282,6890702,6891112,6891488,6891813,6892070	6889464,6889685,6890103,6890442,6890903,6891307,6891685,6891887,6893078	
chr12	6883072	6887107	6883689	6887001	-	AOF7	Cre12.g560900.t1.2		6887001,6886480,6886152,6885704,6885299,6884820,6884501,6884157,6883072	6887107,6886804,6886344,6885776,6885509,6884950,6884671,6884318,6883827	Conserved in the plant lineage and Diatoms; strong similarity to oxidoreductase in Arabidopsis. Q9SF45. ACCESSION NP_187569. Arabidopsis protein is predicted to be chloroplast targeted.  Previously annotated as CPLD35
chr12	6887156	6889037	6888313	6888503	-	Cre12.g560902.t1.1	Cre12.g560902.t1.1		6888855,6887156	6889037,6888694	
chr12	6881158	6883069	6881186	6882351	+	PSAG	Cre12.g560950.t1.2		6881158,6881536,6881838,6882016,6882274	6881273,6881619,6881882,6882103,6883069	Chloroplast precursor
chr12	6878202	6881005	6878655	6880877	-	CYN28	Cre12.g561000.t1.1		6880544,6880203,6879725,6879331,6878998,6878202	6881005,6880314,6879894,6879478,6879121,6878782	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]
chr12	6873368	6878199	6873547	6878119	+	ELG18	Cre12.g561050.t1.1		6873368,6873754,6874098,6874413,6874574,6874856,6875265,6875537,6875714,6876039,6876296,6876534,6876969,6877243,6877606	6873616,6873932,6874221,6874476,6874709,6874981,6875368,6875605,6875781,6876181,6876368,6876739,6877062,6877398,6878199	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr12	6840823	6844656	6841102	6843989	+	Cre12.g561100.t1.1	Cre12.g561100.t1.1		6840823,6841465	6841179,6844656	
chr12	6845578	6872944	6845677	6872822	+	ELG42	Cre12.g561101.t1.1		6845578,6845959,6846279,6846608,6846906,6847222,6847559,6847754,6847945,6848207,6848672,6848954,6849318,6850616,6850877,6851221,6851536,6867925,6868254,6868552,6868868,6869205,6869400,6869591,6870436,6870631,6870822,6871084,6871549,6871831,6872195	6845874,6846027,6846397,6846743,6847004,6847352,6847627,6847815,6848062,6848328,6848770,6849127,6849622,6850739,6851055,6851344,6851558,6868043,6868389,6868650,6868998,6869273,6869461,6869708,6870504,6870692,6870939,6871205,6871647,6872004,6872944	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr12	6834443	6839384	6834545	6839297	+	Cre12.g561150.t1.1	Cre12.g561150.t1.1		6834443,6834910,6835102,6835304,6835977,6836548,6836913,6837211,6837537,6837810,6838095,6838366,6838624,6838921	6834677,6834941,6835186,6835864,6836466,6836792,6837059,6837436,6837682,6837914,6838256,6838524,6838784,6839384	
chr12	6834443	6839384	6834545	6839297	+	Cre12.g561150.t2.1	Cre12.g561150.t2.1		6834443,6834910,6835102,6835304,6835770,6835977,6836548,6836913,6837211,6837537,6837810,6838095,6838366,6838624,6838921	6834677,6834941,6835186,6835682,6835864,6836466,6836792,6837059,6837436,6837682,6837914,6838256,6838524,6838784,6839384	
chr12	6831804	6834312	6832068	6833634	+	COPZ2	Cre12.g561200.t1.1		6831804,6832263,6832675,6833140,6833437,6833619	6832093,6832419,6832754,6833264,6833490,6834312	Expressed Protein. Zeta2-COP Subunit of COP-I complex involved in vesicle trafficking.
chr12	6826973	6829262	6827513	6828956	-	Cre12.g561300.t1.1	Cre12.g561300.t1.1		6828857,6828689,6828547,6828426,6828263,6827678,6826973	6829262,6828720,6828613,6828481,6828342,6828117,6827585	
chr12	6826973	6829262	6827513	6828956	-	Cre12.g561300.t2.1	Cre12.g561300.t2.1		6828857,6828689,6828547,6828426,6828269,6827678,6826973	6829262,6828720,6828613,6828481,6828342,6828117,6827585	
chr12	6822957	6826922	6823597	6826801	-	Cre12.g561350.t1.1	Cre12.g561350.t1.1		6826684,6826173,6825732,6825345,6824958,6824434,6823850,6822957	6826922,6826432,6825963,6825469,6825079,6824543,6824221,6823693	
chr12	6821533	6822910	6821613	6822754	+	Cre12.g561400.t1.2	Cre12.g561400.t1.2		6821533,6821929,6822225,6822538	6821678,6822080,6822340,6822910	
chr12	6817943	6821484	6817974	6820750	+	Cre12.g561450.t1.2	Cre12.g561450.t1.2		6817943,6818157,6818557,6818951,6819363,6819772,6820052,6820304,6820600	6818012,6818421,6818807,6819065,6819525,6819917,6820125,6820364,6821484	
chr12	6815057	6817832	6815714	6817712	-	Cre12.g561500.t1.2	Cre12.g561500.t1.2		6817675,6817500,6817013,6816696,6816351,6816038,6815057	6817832,6817530,6817183,6816820,6816597,6816216,6815860	
chr12	6806573	6815054	6806821	6814480	+	CDS1	Cre12.g561550.t1.2		6806573,6806814,6807203,6807835,6808171,6808317,6808693,6809023,6809262,6809470,6809718,6810075,6810254,6810439,6810693,6810838,6811037,6811267,6811587,6811995,6812212,6812511,6812844,6813139,6813375,6813579,6813946	6806658,6806998,6807459,6807997,6808231,6808477,6808822,6809137,6809348,6809508,6809871,6810132,6810314,6810546,6810735,6810888,6811085,6811388,6811674,6812041,6812345,6812580,6812975,6813247,6813421,6813770,6815054	Half-size ABC transporter [AAQ19847], related to mitochondrial A. thaliana ATM3, yeast ATM1, human ABC7, and vacuolar S. pombe HMT1. Protein localized in the mitochondria and involved in cadmium detoxification in C. reinhardtii
chr12	6793517	6795492	6793902	6795167	-	Cre12.g561601.t1.2	Cre12.g561601.t1.2		6795125,6794966,6794678,6794256,6793517	6795492,6795009,6794724,6794302,6793986	
chr12	6799967	6806422	6800907	6806295	-	Cre12.g561602.t1.1	Cre12.g561602.t1.1		6806149,6805746,6805455,6805026,6804819,6804486,6804263,6802581,6799967	6806422,6805861,6805541,6805154,6804875,6804646,6804334,6803991,6802439	
chr13	10080	21705	10620	21671	-	Cre13.g561800.t1.1	Cre13.g561800.t1.1		21547,21217,20944,20581,20360,20069,19499,19179,18827,18454,18196,17832,17552,17131,16823,15607,15189,14839,14284,13796,13518,12834,12252,11963,11152,10080	21705,21368,21048,20733,20466,20246,19878,19271,18992,18698,18326,18112,17680,17370,16998,16112,15442,14976,14698,14090,13689,13374,12679,12020,11831,10890	C2 domain-containing. ts lethal mutations isolated (PMID 25336509)
chr13	21757	25218	22150	25023	-	FRK2	Cre13.g561850.t1.1		24830,24535,24321,23910,23532,23313,23144,22874,22656,22460,21757	25218,24643,24388,24088,23714,23360,23182,22993,22724,22504,22282	
chr13	25376	27527	25486	27356	+	Cre13.g561900.t1.1	Cre13.g561900.t1.1		25376,25858,26095,26556,26828,27044,27314	25765,25944,26352,26641,26918,27112,27527	
chr13	27530	30275	28866	30187	-	Cre13.g561950.t1.2	Cre13.g561950.t1.2		27530	30275	
chr13	30376	32381	30639	31328	+	Cre13.g562000.t1.1	Cre13.g562000.t1.1		30376,30816,31046,31226	30669,30909,31110,32381	
chr13	32810	35375	34069	34853	-	Cre13.g562031.t1.1	Cre13.g562031.t1.1		35081,34814,34472,32810	35375,34969,34619,34284	null-allele passenger mutation was isolated (PMID 29743196)
chr13	35430	40095	35626	39625	-	Cre13.g562062.t1.2	Cre13.g562062.t1.2		38569,36071,35430	40095,38377,35902	
chr13	40236	42887	40476	42500	+	Cre13.g562100.t1.2	Cre13.g562100.t1.2		40236,40772,41336,41598,41898	40560,41176,41446,41742,42887	
chr13	42890	46735	43311	46649	-	Cre13.g562150.t1.2	Cre13.g562150.t1.2		46563,46116,45768,45398,44994,44788,44435,44068,43738,42890	46735,46173,45860,45451,45110,44835,44528,44297,43933,43547	
chr13	46790	48585	47133	48148	-	Cre13.g562200.t1.1	Cre13.g562200.t1.1		48067,47481,46790	48585,47933,47304	
chr13	48665	56655	49221	56380	-	FAP92	Cre13.g562250.t1.1		56369,56228,55905,54573,53943,53639,53359,52839,52482,52080,51733,51130,50897,50731,50234,50043,49735,49456,48665	56655,56293,55956,55724,54477,53739,53499,53165,52680,52333,51951,51564,50959,50814,50557,50090,49875,49612,49328	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr13	56810	60535	57466	60474	-	HON2	Cre13.g562300.t1.1		60251,59641,59422,59192,58925,58620,57729,56810	60535,59747,59454,59260,59011,58814,58158,57466	Histone H1/H5 protein.  ChromoDB HON343
chr13	60716	61798	60852	61374	+	Cre13.g562326.t1.1	Cre13.g562326.t1.1		60716,61325	61049,61798	
chr13	61929	66077	62123	65982	+	Cre13.g562350.t1.2	Cre13.g562350.t1.2		61929,62741,63286,63665,65079	62477,63139,63338,64874,66077	
chr13	66080	70065	67146	69737	-	ABI3	Cre13.g562400.t1.2		69050,68632,68397,67727,66080	70065,68805,68468,68263,67362	contains a B3 DNA binding domain; PMID:16270233 ; see http://chlamytfdb.bio.uni-potsdam.de/v2.0/fam_mem.php?family_id=ABI3VP1; higher plant homologues involved in auxin and abscicic acid responses
chr13	70166	78835	70245	78059	+	IPB3	Cre13.g562450.t1.2		70166,70445,70949,71394,71873,72473,72888,73175,73604,73965,74293,74860,75276,75621,76005,76626,77132,77427,77941	70335,70589,71030,71511,72040,72613,72982,73337,73756,74081,74609,75001,75435,75772,76385,76880,77272,77617,78835	importin 7
chr13	79588	82915	80020	82839	-	Cre13.g562475.t1.1	Cre13.g562475.t1.1		82598,82464,81835,81499,81133,80750,80433,79588	82915,82524,81976,81564,81207,80830,80539,80087	
chr13	83056	87327	83087	86304	+	SELD	Cre13.g562501.t1.1		83056,83291,84059,84564,84985,85419,85726,86115	83150,83627,84215,84706,85175,85503,85913,87327	Selenide, water dikinase, involved in biogenesis of Selenocysteine
chr13	87735	92845	88748	92646	-	Cre13.g562526.t1.1	Cre13.g562526.t1.1		92580,91883,91552,91011,90582,90107,89802,89492,87735	92845,92439,91619,91345,90706,90352,89862,89535,89175	null-allele mutant was isolated (PMID 29743196)
chr13	92996	99697	93193	98969	+	ARH1	Cre13.g562550.t1.1		92996,93579,93867,94335,94777,95222,95675,96814,97148,98591	93391,93620,93932,94448,94920,95398,95972,96950,97207,99697	ts-lethal mutant was isolated (PMID 29743196)
chr13	100016	107225	101860	106935	-	Cre13.g562650.t1.1	Cre13.g562650.t1.1		106560,104064,100016	107225,106392,103827	
chr13	107714	110215	108458	110159	-	CSB51	Cre13.g562700.t1.1		108926,108697,107714	110215,108807,108581	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr13	110270	116225	110974	115967	-	CGLD38	Cre13.g562750.t1.2		115514,114833,114432,114074,113670,113356,112967,112451,112079,111618,110270	116225,114901,114521,114172,113720,113513,113015,112592,112221,111746,111373	
chr13	116326	127427	116611	126893	+	FAP337	Cre13.g562800.t1.1		116326,117482,118094,118430,118787,119449,120049,120300,120770,121197,121633,122044,122423,122978,123422,123983,124698,125187,125536,125811,126301,126749	116665,117563,118173,118551,119043,119600,120093,120436,120842,121295,121797,122162,122574,123108,123548,124345,124855,125269,125599,126122,126381,127427	
chr13	127816	131235	128847	131158	-	THF1	Cre13.g562850.t1.2		131114,130979,130763,130290,129409,127816	131235,131046,130914,130496,129594,128991	
chr13	131396	133351	131530	132742	+	Cre13.g562900.t1.2	Cre13.g562900.t1.2		131396,131868,132297,132669	131672,132016,132361,133351	
chr13	133426	140509	133467	140064	+	APC6	Cre13.g562950.t1.1		133426,133889,134291,134626,135531,136417,137362,137873,138220,138742,139225,139586,139935	133608,134071,134425,134883,136082,136826,137585,138027,138342,138904,139385,139669,140509	Subunit 6 of Anaphase promoting complex. Cell cycle regulated E3 ubiquitin ligase. Homolog of CDC16.ts lethal mutations block before anaphase (PMID 25336509)
chr13	140650	144925	141190	144828	-	Cre13.g563006.t1.2	Cre13.g563006.t1.2		144697,143014,142606,141514,140650	144925,144526,142742,142338,141190	
chr13	145622	147449	146015	147379	-	Cre13.g563050.t1.1	Cre13.g563050.t1.1		147371,147047,146672,145622	147449,147171,146701,146362	
chr13	147602	149308	147657	148878	+	Cre13.g563100.t1.2	Cre13.g563100.t1.2		147602,147995,148233,148488,148741	147668,148058,148296,148517,149308	
chr13	149819	154345	150912	154109	-	CGLD8	Cre13.g563150.t1.2		153985,153492,152819,152282,151822,151298,149819	154345,153559,152953,152608,151952,151451,151089	Conserved protein of unknown function in chloroplast containing organisms; homolog of a conserved protein expressed in Arabidopsis
chr13	155206	158279	155519	157942	+	HAD7	Cre13.g563200.t1.1		155206,155462,155716,156292,156561,157164,157747	155388,155574,155767,156362,156631,157340,158279	
chr13	158406	161167	158522	160721	+	Cre13.g563250.t1.2	Cre13.g563250.t1.2		158406,158889,159248,159781,160101,160434	158699,159002,159380,159884,160230,161167	
chr13	162060	172345	163901	171868	-	Cre13.g563300.t1.1	Cre13.g563300.t1.1		171575,171059,170774,170521,170159,169596,169372,169013,168387,167886,166062,165781,165287,165040,164789,164470,164196,162060	172345,171104,170836,170559,170236,169906,169459,169130,168861,168220,167728,165840,165535,165130,164848,164618,164245,163941	
chr13	173076	174278	173169	173461	+	Cre13.g563326.t1.1	Cre13.g563326.t1.1		173076	174278	
chr13	174386	179337	174532	177999	+	Cre13.g563350.t1.2	Cre13.g563350.t1.2		174386,174647,174990,175204,175473	174568,174714,175061,175291,179337	null-allele mutant was isolated (PMID 29743196)
chr13	180301	190448	181421	189861	-	Cre13.g563400.t1.1	Cre13.g563400.t1.1		190197,188982,185150,184252,182517,182170,181837,180301	190448,189862,188794,184924,184201,182340,182097,181718	
chr13	190789	194160	191765	193665	+	Cre13.g563450.t1.1	Cre13.g563450.t1.1		190789,191272,191475,192075,192277,192575,192935,193350,193665	191157,191372,191963,192176,192332,192665,192981,193409,194160	
chr13	194393	199228	195937	197798	-	Cre13.g563476.t1.1	Cre13.g563476.t1.1		199185,198350,197176,196994,196765,196463,196124,194393	199228,199092,197870,197107,196818,196570,196221,195967	
chr13	199283	210078	200661	209818	-	Cre13.g563500.t1.1	Cre13.g563500.t1.1		209736,209190,208877,208457,208094,207920,207594,207237,206958,206732,206424,206096,205529,205297,205056,204504,204140,203874,203426,203077,202791,202424,201932,201696,199283	210078,209270,209022,208634,208220,207948,207746,207276,207002,206795,206477,206203,205721,205390,205159,204610,204236,203951,203696,203136,202913,202499,202001,201792,201391	
chr13	211913	224378	213057	224174	-	Cre13.g563550.t1.1	Cre13.g563550.t1.1		224138,222868,222277,221809,221245,220810,220532,220158,219754,219384,218740,218000,217643,217345,216919,216428,215994,215716,214946,214008,213697,211913	224378,223863,222489,221999,221446,220915,220674,220247,219936,219581,219190,218523,217795,217430,217044,216536,216080,215786,215465,214727,213783,213522	Inositol polyphosphate related phosphatase with C2 calcium-dependent membrane targeting domain and SH2-domain.  May be  a phosphoinositide 5-phosphatase or inositol-polyphosphate 5-phosphatase
chr13	224750	227878	225513	227833	-	UBQ7	Cre13.g563600.t1.1		227737,227116,226885,226284,225702,224750	227878,227591,226990,226520,225845,225549	contains a ubiquitin domain near n-terminus, and a C-terminal domain with no database homology
chr13	227979	230840	228078	229887	+	Cre13.g563650.t1.1	Cre13.g563650.t1.1		227979,228348,229035,229168	228140,228690,229089,230840	
chr13	230889	249815	230922	249318	+	FAP369	Cre13.g563700.t1.1		230889,231070,231268,231823,232280,232984,233684,234357,235028,235458,235868,236481,236936,237473,238111,238393,238776,239399,240198,240850,241708,242251,242706,243297,243685,244016,244954,245318,245802,246147,246983,247577,248073,248549,248996	230926,231183,231329,231902,232439,233250,233989,234728,235169,235633,236122,236558,237138,237863,238172,238537,238952,239921,240313,241231,241926,242493,242942,243352,243760,244527,245028,245363,245951,246461,247105,247844,248236,248714,249815	WD40-repeat Protein
chr13	250093	254378	251150	254202	-	Cre13.g563733.t1.1	Cre13.g563733.t1.1		254137,253860,253602,253068,252160,251723,250093	254378,253970,253659,253343,252664,251833,251446	
chr13	250093	254378	251150	254202	-	Cre13.g563733.t2.1	Cre13.g563733.t2.1		254137,253860,253602,253068,252160,251723,250093	254378,253970,253659,253340,252664,251833,251446	
chr13	254479	263390	254619	262510	+	MYO3	Cre13.g563800.t1.1		254479,255145,255314,255684,256132,256622,257073,257746,258206,258498,258926,259274,260569,260916,261293,261604,262039	254802,255198,255550,255839,256341,256750,257334,257993,258292,258626,259040,260334,260724,261071,261430,261807,263390	
chr13	263403	268288	263835	267780	-	PRORP	Cre13.g563850.t1.1		268002,267777,266928,266627,266235,265560,265144,264684,263403	268288,267877,267449,266686,266406,265911,265381,264805,264367	Involved in 5'-end tRNA maturation; contains a Zc3h12a-like Ribonuclease NYN domain; the PPR domain found in other PRORP is not recognizeable here; localised to mitochondria, chloroplast and nucleus
chr13	270159	270920	270432	270669	+	Cre13.g563876.t1.1	Cre13.g563876.t1.1		270159,270513	270450,270920	
chr13	271009	273240	271336	272981	+	UBL1	Cre13.g563900.t1.1		271009,271336	271236,273240	N-terminal has similarity to ubiquitin, but none of the Lys residues are conserved; this is the less-well conserved member of the UBL gene family
chr13	273349	275660	273379	274136	+	Cre13.g563926.t1.1	Cre13.g563926.t1.1		273349,273662,274025	273470,273807,275660	
chr13	275730	278278	276824	278243	-	Cre13.g563950.t1.2	Cre13.g563950.t1.2		278192,277979,277735,277383,276967,275730	278278,278074,277793,277503,277183,276850	
chr13	278333	281408	278361	281283	-	PGM3	Cre13.g564000.t1.2		281254,281084,280786,280537,280342,280024,279640,278613,278333	281408,281141,280850,280672,280421,280114,279711,279513,278361	phosphoglycerate/bisphosphoglycerate mutase family protein
chr13	281509	283480	281540	283082	+	Cre13.g564050.t1.1	Cre13.g564050.t1.1		281509,281702,281982,282480,282904	281628,281783,282282,282637,283480	
chr13	283629	292167	283762	289932	+	PTK2	Cre13.g564100.t1.1		283629,284223,284510,284880,285461,285858,286342,286975,287210,287418,287990,288368,288598,289381,289875	284095,284270,284630,285111,285597,286074,286826,287022,287286,287859,288078,288427,289150,289529,292167	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr13	292443	308758	293014	308313	-	Cre13.g564151.t1.1	Cre13.g564151.t1.1		308066,307372,307053,306699,306420,306021,305762,305311,304825,304561,304320,303830,303273,302958,301975,301694,301359,300982,300435,299364,298593,297854,297562,297341,296966,296664,296254,295936,295707,295454,295206,294695,293592,292443	308758,307863,307170,306894,306491,306163,305862,305404,304971,304622,304435,303924,303666,303093,302750,301819,301476,301151,300794,299445,299196,298340,297636,297418,297138,296808,296430,296017,295785,295499,295274,294765,294233,293453	
chr13	309139	318200	309628	315908	+	Cre13.g564200.t1.2	Cre13.g564200.t1.2		309139,310264,310680,311209,311993,312389,312861,313337,314409,315093	309999,310527,311041,311831,312148,312463,313080,313832,314755,318200	
chr13	318526	324130	318550	323694	+	EIF3A	Cre13.g564250.t1.2		318526,319228,319539,319930,320343,320836,321666,322027,322513,323085	318898,319314,319753,320086,320651,321471,321887,322305,322752,324130	putative Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
chr13	324463	351128	325073	350939	-	Cre13.g564350.t1.2	Cre13.g564350.t1.2		350861,350603,350422,350041,349808,349450,348927,348352,347844,347260,346760,343890,343466,342156,341576,341156,340722,340191,339366,338699,337731,337365,336897,336273,336003,335574,334690,334190,333680,332270,331538,330813,330447,329953,329570,328880,328416,327929,327475,326950,326570,325968,325416,324463	351128,350644,350482,350229,349872,349564,349140,348550,348115,347350,347037,346560,343756,343335,341916,341314,341006,340348,339603,338970,338427,337492,337105,336673,336119,335822,335403,334486,333746,332955,332074,331407,330514,330024,329690,329004,328544,328069,327558,326985,326637,326080,325732,325151	May contain additional coding sequence in intronic N-island PMID: 27175017
chr13	324463	351108	325073	350734	-	Cre13.g564350.t2.1	Cre13.g564350.t2.1		350731,350603,350422,350041,349808,349450,348927,348352,347844,347260,346760,343890,343466,342156,341576,341156,340722,340191,339366,338699,337731,337365,336897,336273,336003,335574,334690,334190,333680,332270,331538,330813,330447,329953,329570,328880,328416,327929,327475,326950,326570,325968,325416,324463	351108,350644,350482,350229,349872,349564,349140,348550,348115,347350,347037,346560,343756,343335,341916,341314,341006,340348,339603,338970,338427,337492,337105,336673,336119,335822,335403,334486,333746,332955,332074,331407,330514,330024,329690,329004,328544,328069,327558,326985,326637,326080,325732,325151	May contain additional coding sequence in intronic N-island PMID: 27175017
chr13	351380	356009	352197	355817	-	FAP161	Cre13.g564400.t1.2		355689,355342,354925,354474,354127,353771,353509,352432,351380	356009,355483,355086,354695,354288,353865,353642,353268,352197	Flagellar Associated Protein, found in the flagellar proteome
chr13	356144	357065	356378	357034	+	Cre13.g564426.t1.1	Cre13.g564426.t1.1		356144,357011	356895,357065	
chr13	389464	392215	389524	391696	+	ELG43	Cre13.g564450.t1.1		389464,390057,390314	389885,390140,392215	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr13	392824	400949	393082	399846	+	FAP377	Cre13.g564500.t1.1		392824,393370,393783,394249,394610,395157,395551,396218,396518,397001,397416,397847,398154,398987	393231,393487,393930,394283,394699,395258,395769,396313,396724,397167,397594,398012,398747,400949	Induced by copper deficiency; null-allele mutant was isolated (PMID 29743196); Similar to Calcium-Dependent Protein Kinase
chr13	404174	406765	405016	406086	+	RPC17	Cre13.g564550.t1.2		404174,404547,404966,405243,405837	404437,404592,405019,405320,406765	similar to Calcitonin gene-related peptide-receptor component protein (CGRP-receptor component protein) (CGRP-RCP) (CGRPRCP); also high similarity to RNA polymerase III subunit C17 which physically interacts with C31, C11, and TFIIIB70 and may be involved in the recruitment of pol III by the preinitiation complex; overlaps with upstream gene in divergent (head-to-head) orientation
chr13	406894	411871	407534	410456	+	Cre13.g564583.t1.1	Cre13.g564583.t1.1		406894,408220,409403	408046,409285,411871	
chr13	406894	411871	407534	410456	+	Cre13.g564583.t2.1	Cre13.g564583.t2.1		406894,407521,408220,409403	407208,408046,409285,411871	
chr13	412064	419355	412323	418324	+	MRS5	Cre13.g564650.t1.1		412064,412862,413141,413384,414012,415176,415423,415705,416284,416552,416945,417276,417732,418003,418249	412572,412950,413252,413904,415041,415283,415598,416044,416343,416692,417055,417332,417832,418066,419355	Mg2+ transporter protein, CorA-like; related to bacterial homologs; null-allele passenger mutation was isolated (PMID 29743196)
chr13	419534	424598	420287	423997	+	Cre13.g564700.t1.2	Cre13.g564700.t1.2		419534,420234,421097	420125,420894,424598	
chr13	425679	430043	426523	429266	-	PDE15	Cre13.g564750.t1.1		429695,429469,428342,427829,425679	430043,429591,429328,428225,427629	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain
chr13	430098	439283	430963	439039	-	Cre13.g564766.t1.2	Cre13.g564766.t1.2		439036,438712,438466,438240,437871,437484,437234,436908,436664,436172,435884,435478,433449,433218,432958,432690,432281,431932,431733,431385,430098	439283,438840,438515,438357,437982,437623,437307,437066,436715,436293,436005,435638,435164,433332,433000,432849,432478,432059,431753,431674,431187	
chr13	439754	450415	439956	448997	+	CYG67	Cre13.g564800.t1.1		439754,440282,440539,440807,441020,441222,441728,441953,442244,442445,442773,443871,444285,444582,444778,444941,445294,445680,446017,446180,446625,448013	439963,440417,440635,440886,441068,441490,441782,442021,442282,442586,443410,443999,444417,444619,444802,445009,445387,445798,446023,446318,447875,450415	
chr13	450418	453743	451759	452908	-	Cre13.g564812.t1.1	Cre13.g564812.t1.1		453660,453378,453271,452508,450418	453743,453540,453277,453143,452352	
chr13	450418	454033	451759	452908	-	Cre13.g564812.t2.1	Cre13.g564812.t2.1		453660,453378,453271,452508,450418	454033,453540,453277,453143,452349	
chr13	450418	453743	451759	452908	-	Cre13.g564812.t3.1	Cre13.g564812.t3.1		453660,453378,453271,452508,450418	453743,453540,453277,453143,452349	
chr13	453808	460183	455454	459817	-	Cre13.g564850.t1.1	Cre13.g564850.t1.1		459388,458943,458522,458139,457690,457281,456609,453808	460183,459091,458657,458206,457978,457512,456699,455659	
chr13	460684	471345	460936	470708	+	MRP3	Cre13.g564900.t1.2		460684,461550,462143,462600,462927,463288,463593,463908,464189,464929,465317,465727,466279,466600,466898,467104,467342,467850,468162,468508,468944,469462,469737,470007,470372,470666	461070,461915,462296,462702,463114,463386,463751,463991,464701,465104,465543,466007,466335,466755,466979,467200,467679,467998,468338,468744,469290,469596,469818,470219,470464,471345	putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683
chr13	471748	483793	472717	483522	-	EFG13	Cre13.g564950.t1.2		483477,483105,482538,482026,481676,480994,480529,480186,479754,479464,478771,478412,478002,477548,476947,476517,475780,475509,474820,474292,474042,473653,473266,472957,471748	483793,483209,482648,482226,481751,481165,480645,480261,479846,479592,479088,478579,478130,477634,477054,476597,475972,475630,475273,474503,474125,473757,473379,473070,472786	Also annotated as ribosome assembly protein 1 (RIA1)
chr13	483924	494455	484027	493395	+	Cre13.g565000.t1.1	Cre13.g565000.t1.1		483924,484337,484638,486205,486657,487046,487305,487705,488009,488375,489971,490371,491340,492113,492913,493351	484122,484446,486037,486516,486850,487141,487536,487779,488223,489863,490135,490465,491862,492652,493123,494455	
chr13	494504	500047	494995	499730	+	Cre13.g565050.t1.1	Cre13.g565050.t1.1		494504,494977,495293,495738,496170,496744,497071,497424,498391,499306	494711,495110,495429,496004,496547,496878,497265,498139,498996,500047	
chr13	500058	501323	500188	501194	-	Cre13.g565083.t1.1	Cre13.g565083.t1.1		500828,500472,500058	501323,500615,500230	
chr13	507134	507755	507193	507545	+	Cre13.g565116.t1.1	Cre13.g565116.t1.1		507134	507755	
chr13	507814	512312	508059	511876	+	Cre13.g565150.t1.1	Cre13.g565150.t1.1		507814,508490,508825,509142,509372,509540,509852,510154,510338,510594,511311,511741	508290,508590,508959,509203,509439,509620,509936,510203,510420,511160,511518,512312	
chr13	512364	523095	512592	521068	+	Cre13.g565200.t1.1	Cre13.g565200.t1.1		512364,513078,513496,513937,514254,514599,514862,515311,515593,516143,516736,517008,517351,517639,517929,518182,518477,518772,519090,519374,519727	512786,513171,513680,514065,514338,514673,515075,515449,515963,516540,516804,517211,517398,517713,518000,518304,518491,518876,519155,519496,523095	
chr13	523853	527855	524261	527281	+	Cre13.g565250.t1.2	Cre13.g565250.t1.2		523853,524737,524989,525203,525608,526138,526703,527203	524372,524788,525014,525291,525710,526188,526864,527855	
chr13	527857	538892	528650	538531	-	Cre13.g565260.t1.1	Cre13.g565260.t1.1		538051,537552,536958,536540,536226,535925,535483,534950,534693,534238,533819,533338,532592,531998,531442,530763,530513,529893,529598,529018,527857	538892,537633,537064,536678,536311,536026,535625,535022,534857,534299,533963,533404,532682,532085,531585,530863,530591,530243,529643,529277,528794	
chr13	539223	541446	539700	540868	+	Cre13.g565270.t1.1	Cre13.g565270.t1.1		539223,539602	539475,541446	
chr13	542703	543742	543067	543290	+	Cre13.g565280.t1.1	Cre13.g565280.t1.1		542703	543742	
chr13	545717	547162	546483	546806	-	CSB52	Cre13.g565290.t1.1		546932,546722,545717	547162,546832,546606	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr13	547523	553466	548452	552276	+	Cre13.g565301.t1.1	Cre13.g565301.t1.1		547523,548027,548259,548412,548717,549066,549414,550667,551028,551401,551885,552151	547947,548083,548306,548468,548770,549113,549467,550699,551060,551433,551935,553466	null-allele passenger mutation was isolated (PMID 29743196)
chr13	550643	553466	550671	552276	+	Cre13.g565301.t3.1	Cre13.g565301.t3.1		550643,551028,551401,551885,552151	550699,551060,551433,551935,553466	null-allele passenger mutation was isolated (PMID 29743196)
chr13	547523	549721	548452	549558	+	Cre13.g565301.t2.1	Cre13.g565301.t2.1		547523,548027,548259,548412,548717,549066,549414,549517	547947,548083,548306,548468,548770,549113,549467,549721	null-allele passenger mutation was isolated (PMID 29743196)
chr13	549783	550492	549859	550049	+	Cre13.g565311.t1.1	Cre13.g565311.t1.1		549783	550492	
chr13	553737	558372	554311	558174	-	Cre13.g565321.t1.1	Cre13.g565321.t1.1		558138,557951,557265,556876,556378,555679,554705,553737	558372,558010,557333,556929,556520,555808,554803,554446	
chr13	560608	563452	561272	563345	-	TTL11	Cre13.g565350.t1.2		563275,562725,560608	563452,562880,561307	
chr13	566223	573062	566724	571287	+	Cre13.g565400.t1.2	Cre13.g565400.t1.2		566223,566717,566949,567105,567414,567784,568151,568530,568897,569230,569715,570083,570444,570896,571162	566635,566773,566999,567161,567446,567816,568192,568562,568938,569283,569747,570115,570476,570946,573062	
chr13	566223	573062	566724	571287	+	Cre13.g565400.t2.1	Cre13.g565400.t2.1		566223,566717,566949,567105,567414,567784,568151,569230,569715,570083,570444,570896,571162	566635,566773,566999,567161,567446,567816,568192,569283,569747,570115,570476,570946,573062	
chr13	574538	582672	575370	582433	-	PURB	Cre13.g565450.t1.2		582256,582047,581619,581065,580633,580162,579663,577497,576944,576346,575763,574538	582672,582093,581826,581124,580701,580215,579805,577639,577107,576618,575861,575505	involved in purine biosynthesis
chr13	583043	585674	583573	584768	+	Cre13.g565484.t1.1	Cre13.g565484.t1.1		583043,583859,584730	583618,584471,585674	
chr13	586127	588582	586319	587760	-	Cre13.g565517.t1.1	Cre13.g565517.t1.1		588363,587717,586127	588582,588251,587392	
chr13	588641	590072	589326	589845	-	RPB11	Cre13.g565550.t1.2		589638,588641	590072,589467	13.6 kDa polypeptide subunit for putative DNA-directed RNA polymerase II,, homologous to DNA-directed RNA polymerase II from other species such as rice, Arabidopsis, Drosophila and human
chr13	590227	595242	591375	595134	-	Cre13.g565600.t1.1	Cre13.g565600.t1.1		595024,594589,594275,593868,593433,593033,592541,592207,591885,590227	595242,594721,594363,594005,593673,593218,592700,592313,591992,591537	
chr13	595407	598406	595555	597579	+	Cre13.g565650.t1.2	Cre13.g565650.t1.2		595407,596038,596240,596565,597300	595959,596141,596346,596855,598406	
chr13	598623	605954	599773	605376	+	Cre13.g565675.t1.1	Cre13.g565675.t1.1		598623,599716,600442,601207,602849,605036	599413,600259,600872,602677,604656,605954	
chr13	606148	610842	606756	610641	-	Cre13.g565700.t1.1	Cre13.g565700.t1.1		610463,610142,609822,608884,608565,608305,608024,606914,606148	610842,610183,609839,609099,608739,608389,608131,607862,606756	
chr13	611311	619742	611932	619583	-	EFG4	Cre13.g565750.t1.2		619469,619066,618726,618377,616900,616495,616119,615721,615347,614966,614344,613797,613304,612996,612383,611311	619742,619228,618863,618577,617050,616705,616216,615793,615405,615095,614469,613932,613410,613159,612530,612100	GTP binding elongation factor-like protein. Similarity to yeast Hbs1p which plays a role in nonsense-mediated decay
chr13	611311	619742	611932	619583	-	EFG4	Cre13.g565750.t2.1		619469,619138,618726,618377,616900,616495,616119,615721,615347,614966,614344,613797,613304,612996,612383,611311	619742,619228,618863,618577,617050,616705,616216,615793,615405,615095,614469,613932,613410,613159,612530,612100	GTP binding elongation factor-like protein. Similarity to yeast Hbs1p which plays a role in nonsense-mediated decay
chr13	619876	621992	620207	621768	-	UPT1	Cre13.g565800.t1.2		621718,621547,621002,620538,619876	621992,621610,621412,620855,620399	Early zygote expressed protein [PMID: 18487630] activated upon fus mating that could be involved in initiation of starch granule formation (PMID:8521968); also known as amylogenin and reversibly glycosylated polypeptide, UDP-Glucose:protein transglucosylase; found in mitochondrial proteome (could be contaminated by cytosolic components); N-terminal peptide (AAPLADQLDIVIPTIR) indicates excision of initiator Met, but absence of cleavable targeting sequence.  Previously annotated as UPTG1. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145]
chr13	622763	631009	623692	630784	-	COPA1	Cre13.g565850.t1.1		630722,630535,629997,629595,629312,628863,628398,628027,627725,627507,626904,626426,626061,624849,624462,622763	631009,630574,630446,629748,629388,629014,628563,628149,627844,627584,627263,626684,626263,625867,624638,623990	Expressed Protein. Alpha-COP. Subunit of COP-I complex involved in vesicle trafficking.
chr13	632157	638672	632644	638073	-	Cre13.g565900.t1.1	Cre13.g565900.t1.1		638402,637869,637259,636860,636525,636220,635962,635107,632157	638672,638148,637669,637037,636718,636384,636051,635776,634959	
chr13	639103	641955	639170	640284	+	Cre13.g565950.t1.2	Cre13.g565950.t1.2		639103,639632,639945	639360,639789,641955	
chr13	642767	653092	643327	652960	-	Cre13.g566000.t1.2	Cre13.g566000.t1.2		652798,652369,651849,651263,650569,650095,649765,649275,648104,647589,647051,646612,646013,645603,645279,644816,644366,643770,642767	653092,652420,651946,651343,650730,650181,649841,649371,648179,647674,647179,646672,646093,645685,645381,644955,644428,643872,643500	FTHFS, metabolism of tetrahydrofolate-bound one-carbon units, cytosolic protein.
chr13	653266	654402	653903	654284	-	SMP2	Cre13.g566050.t1.2		654229,653266	654402,654082	putative sm protein G, (snRNP-G) SNRPG; small nuclear ribonucleoprotein polypeptide G
chr13	654457	656762	655347	656682	-	Cre13.g566100.t1.2	Cre13.g566100.t1.2		656615,656444,655945,654457	656762,656487,656037,655413	
chr13	656893	661574	657007	661094	+	RMR1	Cre13.g566150.t1.2		656893,657277,658416,658745,659095,659990,660322,660750	657081,658080,658491,658834,659232,660091,660493,661574	
chr13	662083	667184	662226	665621	+	CGL112	Cre13.g566200.t1.2		662083,662353,662490,662783,662962,663594,663998	662247,662418,662621,662869,663088,663736,667184	Conserved in the Green Lineage
chr13	667572	670582	668016	670503	-	Cre13.g566250.t1.2	Cre13.g566250.t1.2		670057,669575,668951,668384,667572	670582,669709,669060,668541,668079	
chr13	670683	677164	670807	676068	+	Cre13.g566300.t1.2	Cre13.g566300.t1.2		670683,671220,671999,672316,672689,673672,673973,674434,674972,675384,675906	670937,671738,672079,672446,673375,673749,674080,674610,675080,675526,677164	
chr13	680227	692122	680933	691996	-	Cre13.g566350.t1.1	Cre13.g566350.t1.1		691876,691673,691215,690340,688794,688255,687339,686894,686410,684755,683837,683524,682742,682540,682276,680227	692122,691758,691539,690999,689987,688627,688078,686952,686530,685990,684361,683608,683178,682607,682389,682077	null-allele mutant was isolated (PMID 29743196)
chr13	692383	698124	693050	697478	+	OPR55	Cre13.g566400.t1.2		692383,694972,695366	694688,695199,698124	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 144 codons at 5'-end: MIHRSGADRSSYTRSACQRAHWTASLISRGSASALHTSLQSGPGASHSASELCERGDGATDRLGRQGPVLGPAWAHSLLAHSRAAVAGGSQRSQLQELVVDTSPSGHQHRTSTSVSGGGHSPSELGTPSRGSPPDAGDDAPRVS
chr13	699683	706418	699806	704369	+	ROC104	Cre13.g566450.t1.2		699683,700156,700569,700859,701636,702427,702771,703205,703551,703876,704282	700073,700477,700671,700996,701756,702574,702898,703284,703623,704028,706418	Serine/threonine protein kinase involved in circadian rhythms; in Matsuo et al. (2008), roc104 (rhythm of chloroplast) circadian rhythm mutant locus maps at or close to the 5' end of this gene model
chr13	709487	721142	711753	720420	-	Cre13.g566500.t1.2	Cre13.g566500.t1.2		720354,718470,715610,709487	721142,719996,718307,715403	
chr13	709870	721142	711753	720420	-	Cre13.g566500.t2.1	Cre13.g566500.t2.1		720354,718470,715610,709870	721142,719996,718307,715403	
chr13	722782	730507	723307	730432	-	Cre13.g566550.t1.1	Cre13.g566550.t1.1		730072,727373,726869,726253,725393,724563,722782	730507,729922,727064,726692,725957,724873,724291	null-allele passenger mutation was isolated (PMID 29743196)
chr13	730608	743069	730818	742038	+	Cre13.g566600.t1.1	Cre13.g566600.t1.1		730608,731004,732968,735192,736405,737301,739272	730910,732718,734925,736251,737210,739208,743069	
chr13	743112	744297	743159	744162	-	Cre13.g566626.t1.1	Cre13.g566626.t1.1		744146,743980,743566,743112	744297,744040,743685,743159	
chr13	744346	755506	745517	755481	-	Cre13.g566650.t1.2	Cre13.g566650.t1.2		755288,754949,754036,753380,752541,752109,751355,750926,750144,749809,749545,749103,748187,747873,747457,747167,746894,746784,746348,745917,744346	755506,755124,754118,753503,752664,752262,751406,751030,750236,749868,749631,749159,748288,747972,747534,747228,747049,746825,746485,745973,745535	
chr13	744346	755506	745517	755481	-	Cre13.g566650.t2.1	Cre13.g566650.t2.1		755288,754949,754036,753380,752541,752109,751355,750926,750144,749809,749545,749103,748187,747873,747457,747167,746894,746348,745917,744346	755506,755124,754118,753503,752664,752262,751406,751030,750236,749868,749631,749159,748288,747972,747534,747228,747049,746485,745973,745535	
chr13	755638	759243	755732	758847	+	Cre13.g566700.t1.1	Cre13.g566700.t1.1		755638,755981,757187,757481,757864,758302,758747	755796,756153,757289,757536,757980,758363,759243	
chr13	759938	764199	760178	763237	+	Cre13.g566750.t1.2	Cre13.g566750.t1.2		759938,760482,760675,760979,761265,761619,762057,762568,762919	760358,760535,760734,761029,761314,761691,762168,762677,764199	
chr13	764468	766199	764547	765819	+	Cre13.g566800.t1.2	Cre13.g566800.t1.2		764468,764955,765715	764764,765368,766199	
chr13	764468	765969	764547	765819	+	Cre13.g566800.t2.1	Cre13.g566800.t2.1		764468,764955,765715	764764,765368,765969	
chr13	766218	768757	766723	768484	-	SOUL2	Cre13.g566850.t1.2		768659,768381,768038,767654,767336,766218	768757,768507,768118,767703,767488,767044	similar to plant SOUL protein, putative heme-binding domain; found in Chlamydomonas phosphoproteome [PMID: 16524901]; peptide data at N-term of model suggests that phosphorylation interferes with N-terminal Met cleavage: normally the MSSI... sequence should be matured to Ac-SSI
chr13	768868	783520	769393	782781	+	Cre13.g566900.t1.1	Cre13.g566900.t1.1		768868,769251,770530,770850,773374,773886,776558,777009,777921,778080,778493,778927,779415,779781,780014,780392,780809,781223,781542,782216,782475	769147,770438,770738,773132,773604,776299,776805,777732,777993,778202,778651,779112,779558,779855,780174,780567,781022,781255,782037,782251,783520	
chr13	783522	786957	784567	786611	-	Cre13.g566925.t1.1	Cre13.g566925.t1.1		786488,783522	786957,786403	
chr13	784583	786957	784643	786611	-	Cre13.g566925.t2.1	Cre13.g566925.t2.1		786488,784744,784583	786957,786403,784675	
chr13	787022	791177	788796	790813	-	Cre13.g566951.t1.1	Cre13.g566951.t1.1		790678,787022	791177,790590	
chr13	791318	793098	791544	792562	+	Cre13.g567000.t1.2	Cre13.g567000.t1.2		791318	793098	
chr13	793248	797679	793328	797408	+	Cre13.g567050.t1.2	Cre13.g567050.t1.2		793248,795678,797130	795588,796757,797679	
chr13	798374	803867	801320	803262	-	Cre13.g567075.t1.1	Cre13.g567075.t1.1		803139,798374	803867,803066	
chr13	804062	812037	804654	811872	-	ALO1	Cre13.g567100.t1.1		811757,811316,810711,810252,809851,809160,808645,807991,807579,806571,806153,805602,805234,804062	812037,811476,810823,810438,809922,809204,808769,808146,807716,806700,806272,805687,805395,804961	L-galactono-1,4-lactone dehydrogenase; putative mitochondrial enzyme; similar to At3g47930 gene product of Arabidopsis found associated with mitochondrial complex I (PMID: 12837548)
chr13	812168	818089	812363	817133	+	Cre13.g567150.t1.2	Cre13.g567150.t1.2		812168,812738,812997,813293,813811,814227,814787,815633,816198,816740,817046	812521,812801,813059,813466,814005,814328,814939,815855,816349,816835,818089	
chr13	818679	831297	820896	830768	-	Cre13.g567200.t1.1	Cre13.g567200.t1.1		830693,830170,829799,828734,828463,827609,827185,826575,826066,825316,825027,824313,824024,823844,823374,823240,822892,822671,822282,821973,821674,818679	831297,830247,829892,829584,828556,828325,827329,827038,826190,825423,825068,824395,824077,823880,823463,823275,822951,822722,822363,822052,821756,821385	
chr13	819008	831297	820896	830768	-	Cre13.g567200.t2.1	Cre13.g567200.t2.1		830693,830170,829799,828734,828463,827609,827185,826575,826066,825316,825027,824313,824024,823844,823374,823240,822892,822671,822282,821973,821674,819008	831297,830247,829892,829584,828556,828325,827329,827038,826190,825423,825068,824395,824077,823880,823463,823275,822951,822722,822363,822052,821756,821385	
chr13	831413	836137	831637	836037	-	Cre13.g567250.t1.1	Cre13.g567250.t1.1		835935,835758,835395,835115,834505,834141,833456,831413	836137,835797,835510,835224,834690,834253,833605,831864	
chr13	836242	841577	836536	841509	-	Cre13.g567300.t1.1	Cre13.g567300.t1.1		841257,840940,840571,839953,839284,838846,838035,837470,836999,836242	841577,841009,840689,840280,839759,839030,838515,837751,837076,836752	
chr13	841632	847157	842684	846948	-	Cre13.g567327.t1.2	Cre13.g567327.t1.2		846861,846571,845853,845429,844967,843854,841632	847157,846673,846085,845480,845171,844700,843542	
chr13	847258	852799	847611	851860	+	FAP220	Cre13.g567363.t1.1		847258,848116,848800,849269,849874,850232,850719,851211,851411	847867,848228,848905,849429,849990,850361,850849,851220,852799	May contain additional coding sequence in intronic N-island PMID: 27175017
chr13	852995	864567	855109	863575	-	PDE16	Cre13.g567400.t1.1		863899,863497,863287,862803,862513,862163,861818,861547,861006,860719,860390,859389,858319,857945,857591,857411,856895,856464,856028,855771,852995	864567,863607,863346,862965,862685,862302,861872,861668,861109,860765,860503,860058,859322,858125,857700,857437,857244,856626,856204,855872,855601	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain 3',5'-cyclic-nucleotide phosphodiesterase
chr13	865212	867107	866734	866900	-	Cre13.g567426.t1.1	Cre13.g567426.t1.1		865212	867107	
chr13	867378	869823	867416	868856	+	HON1	Cre13.g567450.t1.2		867378,867758,868120,868451	867572,867847,868233,869823	Histone H1 [PMID: 10568039; PMID: 7480339]
chr13	870114	877927	871282	877584	-	Cre13.g567500.t1.1	Cre13.g567500.t1.1		877545,872526,870114	877927,877326,872370	
chr13	877990	886447	878317	886282	-	Cre13.g567550.t1.1	Cre13.g567550.t1.1		886094,885641,885170,884610,883996,883567,883145,882690,882184,881582,880874,880644,880262,879049,878637,877990	886447,885716,885229,884672,884116,883724,883246,882829,882397,881932,880968,880743,880419,879451,878708,878452	
chr13	877990	886447	878317	886282	-	Cre13.g567550.t2.1	Cre13.g567550.t2.1		886094,885641,885170,884610,883996,883567,883145,882690,882184,881582,880874,880644,880262,879049,878637,877990	886447,885716,885229,884672,884116,883724,883246,882829,882397,881926,880968,880743,880419,879451,878708,878452	
chr13	887122	889687	888014	889318	-	COX4	Cre13.g567600.t1.2		889222,888880,888671,887122	889687,888989,888733,888273	Cytochrome c oxidase, subunit 4 (mitochondrial precursor)(human subunit Vb/ yeast subunit COX4). Previously named COX5b [PMID: 15710684, PMID: 12746537]
chr13	890548	891929	890594	891054	+	Cre13.g567626.t1.1	Cre13.g567626.t1.1		890548	891929	
chr13	892308	899631	892375	898852	+	Cre13.g567650.t1.1	Cre13.g567650.t1.1		892308,892872,893421,893724,894086,894498,894957,895570,896062,896439,896863,897110,897615,897908,898600	892593,893022,893451,893808,894272,894689,895109,895663,896102,896470,896881,897193,897663,897984,899631	
chr13	899668	901337	900125	901006	-	HAV2	Cre13.g567700.t1.2		900856,900725,900583,900436,899668	901337,900788,900638,900507,900218	ChromoDB HTA344; not replication-linked, contains introns and polyA-tail
chr13	902429	906857	903075	906554	-	PRP18	Cre13.g567750.t1.2		906407,906135,905901,905554,905098,904651,903935,903606,902429	906857,906209,905984,905638,905264,904855,904248,903707,903339	putative HPRP18 Pre-mRNA splicing factor 18 (PRP18 homolog), U5 associated; (SMP10)
chr13	906983	911489	907211	910045	+	Cre13.g567800.t1.2	Cre13.g567800.t1.2		906983,907851,908287,908454,909274,909609,909999	907748,908177,908373,908657,909444,909745,911489	contains B56 domain; homology to the Ser-/Thr-protein phosphatase2A (widerborst) regulatory subunit of Drosophila where it is involved in the circadian clock
chr13	912097	914554	912288	913774	+	Cre13.g567850.t1.2	Cre13.g567850.t1.2		912097,912604,913246,913559	912513,912690,913381,914554	
chr13	914607	917153	914996	915902	+	Cre13.g567901.t1.1	Cre13.g567901.t1.1		914607,914789,914956,915393,915846	914697,914854,915054,915500,917153	
chr13	917627	924349	917754	923432	+	STA1	Cre13.g567950.t1.2		917627,918000,918838,919279,920480,920862,921201,921740,922059,922463,922921,923301	917903,918091,918995,919410,920574,921000,921267,921846,922196,922654,923059,924349	ADP-glucose pyrophosphorylase large subunit 1; Glucose-1-phosphate adenylyltransferase / ADP-glucose synthase; regulatory subunit catalyzes the formation of the glucosyl nucleotide from ATP and glucose-1-phosphate; contains nucleotidyl transferase domain; involved in starch metabolism
chr13	924727	927249	924866	925913	+	Cre13.g568000.t1.2	Cre13.g568000.t1.2		924727,925166,925339,925629	924960,925208,925409,927249	
chr13	927251	929456	927883	929124	-	Cre13.g568025.t1.1	Cre13.g568025.t1.1		929079,928515,928201,927251	929456,928697,928260,927943	
chr13	932067	940138	932196	938691	+	Cre13.g568050.t1.1	Cre13.g568050.t1.1		932067,932925,933580,935018,935444,935848,936326,936557,936934,937518	932312,933015,933675,935146,935578,935964,936367,936676,937122,940138	
chr13	940141	945816	940310	945721	-	Cre13.g568100.t1.1	Cre13.g568100.t1.1		945588,944508,944058,943700,942818,942194,941813,941238,941060,940797,940141	945816,945491,944220,943799,942900,942348,941930,941565,941124,940885,940486	
chr13	945937	951151	946315	951008	+	Cre13.g568150.t1.1	Cre13.g568150.t1.1		945937,947364,948035,948594,949095,949733,950153,950516	946735,947488,948122,948683,949180,949865,950197,951151	
chr13	951807	957259	951956	954899	+	Cre13.g568176.t1.1	Cre13.g568176.t1.1		951807,952499	952166,957259	
chr13	957779	967288	957975	966595	+	AXL1	Cre13.g568200.t1.1		957779,958248,958803,960085,960645,961117,961863,962535,962801,963194,963734,964258,964648,965466,965925,966187,966569	958092,958471,959353,960242,960740,961240,961947,962598,962917,963311,963858,964340,964852,965585,965977,966416,967288	GT77 family
chr13	967311	977546	968512	977312	-	TEH11	Cre13.g568250.t1.1		977246,976740,976399,975770,975067,974808,974324,973570,973088,972878,972190,971727,971228,970649,970295,969860,969103,967311	977546,976988,976455,975997,975633,974887,974390,973874,973323,972912,972591,971918,971395,970797,970493,969975,969241,968920	
chr13	977757	980418	978182	979820	+	Cre13.g568300.t1.2	Cre13.g568300.t1.2		977757,979625	978803,980418	
chr13	980422	981826	981520	981746	-	Cre13.g568316.t1.2	Cre13.g568316.t1.2		980422	981826	
chr13	981891	989596	983685	988103	-	Cre13.g568350.t1.1	Cre13.g568350.t1.1		988888,988622,988272,987953,987115,984925,984259,984024,981891	989596,988721,988335,988129,987637,986955,984770,984080,983865	Basic-leucine zipper (bZIP) transcription factor
chr13	989841	999436	990765	999348	-	FTSH4	Cre13.g568400.t1.2		999234,998947,998193,997160,996828,995134,994717,994380,994056,993719,993266,992907,992529,991908,991498,989841	999436,999114,998525,997330,996914,995182,994886,994439,994132,993805,993380,993087,992672,991990,991563,990969	mitochondrial FtsH protease; inner-membrane metalloprotease (M41) exposing catalytic sites to theintermembrane space (i-AAA protease); probably in complex with FTSH11
chr13	1000170	1015505	1000651	1015314	-	KIN7-3	Cre13.g568450.t1.1		1014897,1014540,1014188,1013655,1013354,1013020,1012701,1012468,1012199,1011940,1011542,1011281,1010885,1010615,1010158,1009828,1009595,1009238,1008979,1008642,1008138,1007831,1006036,1005687,1005151,1004798,1004363,1003993,1003581,1003216,1002875,1002562,1002121,1001795,1001134,1000170	1015505,1014761,1014398,1013916,1013483,1013182,1012859,1012571,1012320,1012078,1011835,1011364,1011166,1010783,1010351,1010036,1009711,1009421,1009081,1008788,1008451,1007999,1007700,1005928,1005590,1004917,1004597,1004221,1003672,1003404,1003015,1002705,1002321,1001914,1001514,1000864	kinesin-7 family.  Contains tropomyosin domain
chr13	1015656	1017657	1015962	1016753	+	Cre13.g568467.t1.1	Cre13.g568467.t1.1		1015656,1016343,1016753	1016051,1016485,1017657	
chr13	1015656	1017657	1015962	1017035	+	Cre13.g568467.t2.1	Cre13.g568467.t2.1		1015656,1016343,1017035	1016051,1016485,1017657	
chr13	1017716	1025277	1017775	1022383	+	Cre13.g568500.t1.1	Cre13.g568500.t1.1		1017716,1018058,1018445,1018711,1018973,1020076	1017961,1018108,1018469,1018776,1019805,1025277	
chr13	1026050	1034055	1027039	1033861	-	Cre13.g568550.t1.1	Cre13.g568550.t1.1		1033801,1030648,1030281,1029986,1029589,1028950,1028601,1028165,1027811,1026050	1034055,1032957,1030394,1030072,1029745,1029241,1028720,1028303,1027867,1027435	
chr13	1034102	1042665	1034995	1042042	-	Cre13.g568600.t1.1	Cre13.g568600.t1.1		1042419,1041973,1041782,1041436,1041003,1040444,1039930,1039619,1039130,1038825,1038590,1038316,1038024,1037673,1037213,1036920,1036549,1036112,1035764,1034102	1042665,1042046,1041894,1041490,1041096,1040547,1040180,1039706,1039249,1038851,1038661,1038399,1038074,1037794,1037360,1036957,1036698,1036237,1035884,1035292	Possesses a histidine acid phosphatase domain
chr13	1034102	1042665	1034995	1042042	-	Cre13.g568600.t2.1	Cre13.g568600.t2.1		1042419,1041973,1041782,1041436,1041003,1040444,1039930,1039619,1039130,1038590,1038316,1038024,1037673,1037213,1036920,1036549,1036112,1035764,1034102	1042665,1042046,1041894,1041490,1041096,1040547,1040180,1039706,1039249,1038661,1038399,1038074,1037794,1037360,1036957,1036698,1036237,1035884,1035292	Possesses a histidine acid phosphatase domain
chr13	1034102	1042645	1034995	1042042	-	Cre13.g568600.t3.1	Cre13.g568600.t3.1		1041973,1041782,1041436,1041003,1040444,1039930,1039619,1039130,1038590,1038316,1038024,1037673,1037213,1036920,1036549,1036112,1035764,1034102	1042645,1041894,1041490,1041096,1040547,1040180,1039706,1039249,1038661,1038399,1038074,1037794,1037360,1036957,1036698,1036237,1035884,1035292	Possesses a histidine acid phosphatase domain
chr13	1043218	1047012	1043555	1046979	-	RPS3A	Cre13.g568650.t1.2		1046920,1046749,1046614,1046414,1045446,1044224,1043218	1047012,1046854,1046673,1046491,1045622,1044367,1043711	Cytosolic 40S small ribosomal subunit protein S3a
chr13	1047166	1048407	1047471	1048063	+	Cre13.g568672.t1.2	Cre13.g568672.t1.2		1047166,1047775	1047474,1048407	
chr13	1048410	1058295	1048855	1058135	-	Cre13.g568700.t1.1	Cre13.g568700.t1.1		1057910,1057526,1057083,1056279,1055644,1055322,1054982,1054310,1053762,1053093,1052210,1051633,1051122,1048410	1058295,1057654,1057236,1056511,1055700,1055469,1055057,1054531,1053966,1053527,1052638,1051884,1051220,1050880	
chr13	1059996	1069577	1060144	1068927	+	Cre13.g568750.t1.1	Cre13.g568750.t1.1		1059996,1060263,1060859,1061441,1062021,1062598,1063046,1063671,1064939,1065528,1066135,1066462,1067617,1068582	1060165,1060450,1060969,1061597,1062095,1062712,1063257,1063811,1065118,1065803,1066212,1066818,1068288,1069577	null-allele mutant was isolated (PMID 29743196)
chr13	1069746	1071917	1069861	1071123	+	NUOB13	Cre13.g568800.t1.2		1069746,1070397,1071063	1070264,1070431,1071917	mitochondrial NADH-ubiquinone oxidoreductase (Complex I) homolog to bovine B13 subjnit [gi:34485512; PMID: 15450959, PMID: 15710684]
chr13	1071919	1073027	1072435	1072928	-	ISU1	Cre13.g568850.t1.2		1071919	1073027	Iron-sulfur cluster assembly scaffold protein; homology to E. coli IscU and yeast ISU1; possibly localized to mitochondria. [PMID: 12553879]
chr13	1073137	1076374	1073167	1076322	+	RPL17	Cre13.g568900.t1.2		1073137,1073396,1074950,1076250	1073215,1073662,1075123,1076374	Cytosolic 60S large ribosomal subunit protein L17
chr13	1076709	1079275	1076959	1079182	-	Cre13.g568950.t1.1	Cre13.g568950.t1.1		1078981,1078658,1078264,1078014,1077757,1077488,1077231,1076709	1079275,1078708,1078327,1078073,1077810,1077601,1077288,1077008	
chr13	1079465	1084965	1080721	1084903	-	Cre13.g569000.t1.1	Cre13.g569000.t1.1		1084692,1084266,1083840,1083652,1083312,1082995,1082739,1082132,1081882,1081688,1081513,1081331,1081070,1079465	1084965,1084624,1083998,1083753,1083449,1083135,1082900,1082338,1081988,1081806,1081609,1081422,1081184,1080902	
chr13	1085116	1088787	1085695	1087673	+	Cre13.g569050.t1.1	Cre13.g569050.t1.1		1085116,1085634,1086257,1086761,1087029,1087250	1085522,1085911,1086620,1086936,1087115,1088787	
chr13	1089365	1091885	1090935	1091678	-	Cre13.g569100.t1.2	Cre13.g569100.t1.2		1091467,1091042,1089365	1091885,1091399,1090972	
chr13	1091979	1094734	1092222	1093807	+	Cre13.g569150.t2.1	Cre13.g569150.t2.1		1091979,1092744,1093300,1093552	1092549,1093162,1093375,1094734	
chr13	1091846	1094734	1092222	1093807	+	Cre13.g569150.t1.2	Cre13.g569150.t1.2		1091846,1092744,1093300,1093552	1092549,1093162,1093375,1094734	
chr13	1095343	1100675	1096177	1100379	-	SRP54	Cre13.g569200.t1.2		1099541,1098554,1098097,1097271,1096822,1095343	1100675,1098651,1098216,1097471,1096872,1096381	Expressed Protein. Conserved protein similar to signal recognition particle beta. Involved in ER protein translocation.
chr13	1100776	1103630	1100856	1103128	+	CGLD9	Cre13.g569250.t1.2		1100776,1101509,1101946,1102398,1103035	1101171,1101594,1102073,1102636,1103630	
chr13	1103686	1105607	1103846	1105092	+	Cre13.g569275.t1.2	Cre13.g569275.t1.2		1103686,1103801	1103719,1105607	
chr13	1105656	1109490	1105695	1108124	+	Cre13.g569300.t1.1	Cre13.g569300.t1.1		1105656,1107572	1107321,1109490	
chr13	1109520	1112735	1110071	1111949	-	Cre13.g569326.t1.1	Cre13.g569326.t1.1		1111258,1109520	1112735,1110071	
chr13	1113556	1117906	1113811	1116983	+	SNE16	Cre13.g569350.t1.2		1113556,1114275,1114603,1115191,1115837,1116272,1116746	1114030,1114343,1114744,1115303,1115971,1116460,1117906	NAD dependent epimerase/dehydratase with posible flavanone 4-reductase activity
chr13	1118318	1121021	1118946	1120909	-	TAUD1	Cre13.g569400.t1.2		1120880,1120531,1119984,1119358,1118318	1121021,1120693,1120296,1119766,1119121	Similar to Bordetella ACCESSION CAE41228
chr13	1121166	1126227	1121369	1125039	+	Cre13.g569450.t1.1	Cre13.g569450.t1.1		1121166,1121650,1122042,1123158,1123500,1123989	1121402,1121759,1122963,1123288,1123797,1126227	
chr13	1126666	1129369	1126918	1128818	+	Cre13.g569500.t1.2	Cre13.g569500.t1.2		1126666,1127101,1127504,1128037,1128640	1126947,1127263,1127816,1128445,1129369	
chr13	1126784	1129369	1126918	1128818	+	Cre13.g569500.t2.1	Cre13.g569500.t2.1		1126784,1127101,1127504,1128037,1128640	1126947,1127263,1127816,1128445,1129369	
chr13	1129458	1147365	1130494	1146999	-	Cre13.g569550.t1.1	Cre13.g569550.t1.1		1146782,1146477,1146019,1145670,1145404,1145073,1143991,1143459,1143042,1142460,1142036,1141693,1141344,1140914,1133895,1129458	1147365,1146602,1146093,1145787,1145492,1145202,1144534,1143923,1143280,1142895,1142252,1141899,1141508,1141137,1140709,1133654	null-allele passenger mutation was isolated (PMID 29743196)
chr13	1147642	1154635	1148208	1154301	-	Cre13.g569600.t1.2	Cre13.g569600.t1.2		1154238,1153791,1153009,1152444,1152110,1151761,1151220,1150619,1150020,1149286,1148698,1147642	1154635,1153978,1153266,1152513,1152232,1151884,1151449,1150813,1150325,1149657,1148870,1148242	
chr13	1159521	1171586	1160189	1171238	-	Cre13.g569651.t1.1	Cre13.g569651.t1.1		1168387,1168046,1166899,1166322,1165312,1164849,1163998,1161761,1160652,1159521	1171586,1168176,1167745,1166677,1166064,1165167,1164218,1163342,1161010,1160423	
chr13	1171635	1178166	1172515	1178052	-	MBC1	Cre13.g569700.t1.1		1177993,1177838,1177630,1175716,1174151,1173618,1173082,1171635	1178166,1177874,1177716,1177236,1175347,1173959,1173218,1172849	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; mutant lacks PSII acitivty and psbC mRNA
chr13	1178337	1181070	1178471	1179953	+	Cre13.g569750.t1.2	Cre13.g569750.t1.2		1178337,1179678	1178829,1181070	
chr13	1181117	1187488	1181229	1186931	+	Cre13.g569801.t1.1	Cre13.g569801.t1.1		1181117,1181491,1181850,1182264,1182622,1183238,1183557,1184049,1184359,1184786,1185201,1186052,1186633	1181259,1181602,1181924,1182362,1182785,1183273,1183663,1184216,1184420,1184913,1185398,1186224,1187488	
chr13	1187847	1192671	1188630	1191549	+	AMT4	Cre13.g569850.t1.2		1187847,1188623,1188926,1189241,1189575,1190019,1191019,1191534	1188413,1188849,1188959,1189347,1189740,1190791,1191204,1192671	belongs to AMT1 family (Amt1;4 or Amt1.4); corresponds to AY542491, mRNA complete cds (PMID: 15821986)
chr13	1192941	1199766	1193153	1199636	-	Cre13.g569900.t1.1	Cre13.g569900.t1.1		1199578,1199437,1199112,1198068,1197093,1196215,1195166,1193941,1192941	1199766,1199480,1199150,1199024,1197923,1196832,1196021,1194985,1193619	
chr13	1199921	1200856	1200314	1200723	-	HTR20	Cre13.g569950.t1.2		1199921	1200856	Replication linked H3; histone gene cluster XX (type 34BA)
chr13	1200957	1201744	1201039	1201352	+	HFO20	Cre13.g570000.t1.2		1200957	1201744	Replication linked H4; histone gene cluster XX (type 34BA)
chr13	1200957	1202208	1201039	1201352	+	HFO20	Cre13.g570000.t2.1		1200957	1202208	Replication linked H4; histone gene cluster XX (type 34BA)
chr13	1202211	1203046	1202523	1202995	-	HTB20	Cre13.g570050.t1.2		1202211	1203046	replication linked H2B; histone gene cluster XX (type 34BA) [PMID: 8590479, variant sequence confirmed]
chr13	1203177	1204008	1203297	1203688	+	HTA20	Cre13.g570100.t1.2		1203177	1204008	replication linked H2A; histone gene cluster XX (type 34BA)
chr13	1204201	1212606	1205193	1211974	-	Cre13.g570150.t1.1	Cre13.g570150.t1.1		1211881,1211472,1211028,1210768,1210447,1208820,1208397,1208009,1207649,1207038,1206052,1204201	1212606,1211558,1211258,1210884,1210615,1210253,1208683,1208148,1207810,1207386,1206702,1205856	
chr13	1212847	1214874	1213428	1214361	+	Cre13.g570200.t1.1	Cre13.g570200.t1.1		1212847,1213384,1214136	1213146,1213530,1214874	
chr13	1215181	1225536	1216437	1225353	-	Cre13.g570250.t1.1	Cre13.g570250.t1.1		1225340,1224792,1224341,1219570,1219169,1218760,1218378,1217853,1217313,1215181	1225536,1225121,1224589,1224113,1219255,1218939,1218516,1217977,1217435,1217025	
chr13	1225634	1227779	1225735	1227537	+	UBC24	Cre13.g570300.t1.2		1225634,1226084,1226244,1226481,1226769,1227445	1225926,1226123,1226312,1226579,1227312,1227779	
chr13	1227838	1236388	1227958	1235209	+	AKC4	Cre13.g570350.t1.1		1227838,1228261,1228980,1229730,1230151,1230508,1230833,1231462,1232006,1232455,1232879,1233255,1233664,1234246,1234630,1235005	1228096,1228767,1229146,1229811,1230276,1230627,1230924,1231583,1232130,1232572,1232991,1233344,1233771,1234404,1234767,1236388	
chr13	1227838	1236388	1227970	1235209	+	AKC4	Cre13.g570350.t2.1		1227838,1228261,1228980,1229730,1230151,1230508,1230833,1231462,1232006,1232455,1232879,1233255,1233664,1234246,1234630,1235005	1228096,1228767,1229146,1229811,1230276,1230627,1230924,1231583,1232130,1232572,1232991,1233344,1233771,1234404,1234767,1236388	
chr13	1236567	1241298	1236834	1240723	+	Cre13.g570400.t1.2	Cre13.g570400.t1.2		1236567,1237024,1237502,1238065,1238502,1238873,1239249,1239710,1240433	1236837,1237204,1237673,1238246,1238625,1238954,1239389,1240127,1241298	
chr13	1241347	1245798	1241563	1245323	+	Cre13.g570450.t1.1	Cre13.g570450.t1.1		1241347,1242865,1243240,1244014,1244758,1245134	1242559,1242964,1243867,1244539,1244922,1245798	
chr13	1245851	1250606	1246242	1250492	-	Cre13.g570500.t1.1	Cre13.g570500.t1.1		1250110,1249852,1249532,1249254,1248981,1248390,1247963,1247537,1247227,1246810,1245851	1250606,1249934,1249612,1249358,1249042,1248638,1248098,1247667,1247326,1246983,1246620	
chr13	1250653	1254076	1251015	1253775	-	CDD1	Cre13.g570550.t1.2		1253850,1253524,1253206,1252803,1252541,1252231,1251860,1251258,1250653	1254076,1253784,1253284,1252900,1252568,1252320,1252006,1251431,1251141	CMP/dCMP deaminase, zinc-binding; Cytidine aminohydrolase (CDA)
chr13	1254126	1259806	1254970	1259487	-	CTR1	Cre13.g570600.t1.2		1259215,1258861,1258484,1257882,1257533,1257181,1256862,1256543,1255868,1255397,1254126	1259806,1258948,1258574,1258198,1257696,1257328,1256941,1256625,1256065,1255566,1255168	
chr13	1259963	1265136	1261362	1264439	-	Cre13.g570650.t1.1	Cre13.g570650.t1.1		1264377,1263894,1262597,1262159,1261971,1261744,1259963	1265136,1264154,1263572,1262380,1262024,1261803,1261527	
chr13	1265447	1272096	1265594	1271183	+	CHI4	Cre13.g570700.t1.1		1265447,1265896,1266260,1266734,1267260,1267808,1268177,1268651,1269168,1269629,1270048,1270728,1271049	1265664,1265967,1266350,1266927,1267463,1267914,1268290,1268794,1269391,1269731,1270501,1270826,1272096	Chitinase; null-allele mutant was isolated (PMID 29743196)
chr13	1272317	1273148	1272625	1273115	+	Cre13.g570751.t1.1	Cre13.g570751.t1.1		1272317,1273112	1272850,1273148	
chr13	1273207	1274442	1273270	1273541	+	Cre13.g570801.t1.1	Cre13.g570801.t1.1		1273207	1274442	
chr13	1275207	1278258	1275640	1277483	+	Cre13.g570851.t1.1	Cre13.g570851.t1.1		1275207,1275635,1276268,1276953,1277340	1275527,1275655,1276336,1277031,1278258	
chr13	1278561	1281466	1279199	1281024	-	MSRA1	Cre13.g570900.t1.1		1281018,1280802,1280504,1280141,1279744,1278561	1281466,1280915,1280557,1280191,1279888,1279246	A selenocysteine containing protein; model is wrong due to UGA Sec codon in the first exon; replace N-terminal M by MATNGNGASGAELATFALGUFWH, with selenocysteine at position 20
chr13	1281587	1287643	1281662	1287488	+	Cre13.g570951.t1.1	Cre13.g570951.t1.1		1281587,1282479,1283163,1283699,1283978,1284361	1282174,1282622,1283360,1283795,1284063,1287643	
chr13	1287697	1289398	1287738	1288576	+	Cre13.g571000.t1.2	Cre13.g571000.t1.2		1287697,1288074,1288482	1287914,1288202,1289398	
chr13	1289561	1300916	1291245	1300883	-	Cre13.g571050.t1.1	Cre13.g571050.t1.1		1300840,1300727,1300490,1299989,1299626,1295258,1289561	1300916,1300767,1300651,1300135,1299815,1299480,1294908	High mobility group protein, non-histone component of chromatin.  ChromoDB HMGB347
chr13	1300971	1302506	1301899	1302381	-	Cre13.g571100.t1.2	Cre13.g571100.t1.2		1302342,1300971	1302506,1302055	
chr13	1302607	1303897	1302742	1303438	+	NUOP1	Cre13.g571150.t1.2		1302607,1303438	1303017,1303897	NADH:ubiquinone oxidoreductase (Complex I) 10 kDa subunit; precursor for mitochondrial product. [Genbank: AY549572; PMID: 15450959; PMID: 15710684]
chr13	1304469	1315956	1305789	1315494	-	HKR5	Cre13.g571200.t1.1		1315308,1315029,1312371,1311893,1311545,1311173,1310713,1310319,1307820,1307236,1306464,1306159,1304469	1315956,1315178,1314866,1311988,1311646,1311346,1310841,1310444,1310096,1307536,1307047,1306269,1305942	contains PAS, Histidine kinase and signal receiver domains
chr13	1316186	1319236	1316313	1319014	-	Cre13.g571251.t1.1	Cre13.g571251.t1.1		1318693,1318371,1317981,1316186	1319236,1318445,1318141,1317787	
chr13	1319347	1325903	1319484	1323996	+	Cre13.g571300.t1.2	Cre13.g571300.t1.2		1319347,1319892,1320408,1320746,1321265,1321759,1321966,1322609,1323466,1323943	1319631,1319981,1320456,1320840,1321351,1321815,1322055,1322737,1323535,1325903	
chr13	1331677	1342818	1332475	1340149	+	Cre13.g571400.t1.1	Cre13.g571400.t1.1		1331677,1332740,1333023,1333277,1333616,1334180,1337007,1337472,1338167,1338826	1332654,1332914,1333106,1333432,1333720,1335793,1337258,1337891,1338334,1342818	
chr13	1331677	1342818	1332475	1340149	+	Cre13.g571400.t2.1	Cre13.g571400.t2.1		1331677,1332740,1333023,1333277,1333616,1334180,1337007,1337472,1338167,1338826	1332654,1332914,1333106,1333432,1333720,1335793,1337195,1337891,1338334,1342818	
chr13	1343365	1346318	1344374	1346106	-	Cre13.g571450.t1.1	Cre13.g571450.t1.1		1345979,1345712,1345109,1343365	1346318,1345770,1345219,1344635	
chr13	1343365	1346318	1345075	1346106	-	Cre13.g571450.t2.1	Cre13.g571450.t2.1		1345979,1345712,1343365	1346318,1345770,1345219	
chr13	1346483	1348422	1346579	1347988	+	CST2	Cre13.g571500.t1.2		1346483,1346912,1347348,1347735	1346711,1346992,1347562,1348422	transmembrane protein; shows similarity to various transporters and permeases; highly expressed; small gene family on chromosome 13, appears specific to Chlamydomonadales
chr13	1348544	1352994	1348652	1352741	+	ANK12	Cre13.g571520.t1.1		1348544,1349604,1350334,1350746,1351109,1351528,1351863,1352184,1352672	1349255,1349954,1350531,1350844,1351213,1351617,1351964,1352381,1352994	protein of unknown function with ankyrin repeats
chr13	1353094	1354195	1353288	1354046	+	Cre13.g571540.t1.1	Cre13.g571540.t1.1		1353094,1353873	1353313,1354195	
chr13	1354364	1360753	1354454	1359314	+	Cre13.g571560.t1.1	Cre13.g571560.t1.1		1354364,1354745,1354978,1355196,1355453,1355863,1356254,1356746,1358357,1358739	1354529,1354792,1355040,1355314,1355663,1355985,1356464,1358082,1358540,1360753	
chr13	1360954	1361947	1361164	1361487	+	CSB53	Cre13.g571580.t1.1		1360954,1361138,1361364	1361019,1361248,1361947	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr13	1362148	1364313	1362995	1364221	-	TRS20	Cre13.g571600.t1.2		1364137,1363919,1363456,1362148	1364313,1364011,1363593,1363091	Expressed Protein. Conserved protein, similar to TRS20/Sedlin, a component of the TRAPP complex, involved in Er to Golgi trafficking.
chr13	1364413	1365918	1364663	1365209	+	RPB10	Cre13.g571650.t1.2		1364413,1364782,1365064	1364699,1364840,1365918	DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; ABC10-beta; ABC8
chr13	1366004	1370421	1366357	1369458	+	Cre13.g571700.t1.1	Cre13.g571700.t1.1		1366004,1366351,1366682,1366851,1367196,1367615,1367959,1368566,1369058,1369434	1366244,1366594,1366772,1366999,1367429,1367744,1368236,1368808,1369186,1370421	
chr13	1370614	1373215	1370700	1372613	+	Cre13.g571750.t1.2	Cre13.g571750.t1.2		1370614,1370867,1371073,1371366,1371940,1372148,1372493	1370790,1370959,1371138,1371488,1372035,1372225,1373215	
chr13	1373232	1379093	1374081	1378900	-	Cre13.g571800.t1.1	Cre13.g571800.t1.1		1378737,1378592,1378431,1377690,1377007,1376346,1375760,1375125,1374610,1373232	1379093,1378630,1378492,1378304,1377197,1376616,1375926,1375278,1374674,1374391	
chr13	1379140	1382133	1379833	1381850	-	APC10	Cre13.g571850.t1.1		1381815,1381678,1381323,1380333,1379140	1382133,1381738,1381415,1380485,1379926	Subunit of Anaphase Promoting Complex
chr13	1383283	1384443	1384071	1384321	-	Cre13.g571876.t1.1	Cre13.g571876.t1.1		1383283	1384443	
chr13	1384748	1392133	1387430	1391730	-	Cre13.g571902.t1.1	Cre13.g571902.t1.1		1391670,1391333,1389892,1388079,1387750,1384748	1392133,1391422,1390960,1389810,1387857,1387605	
chr13	1392576	1397763	1394065	1397145	-	Cre13.g571927.t1.1	Cre13.g571927.t1.1		1395453,1394822,1394584,1392576	1397763,1395079,1394655,1394131	
chr13	1403384	1406445	1403503	1405961	+	Cre13.g571950.t1.2	Cre13.g571950.t1.2		1403384,1403716,1403958,1404262,1404775,1405053,1405454,1405841	1403565,1403857,1404011,1404372,1404859,1405154,1405569,1406445	
chr13	1406448	1409733	1406686	1409701	-	SUMT2	Cre13.g572000.t1.2		1409484,1409089,1408836,1408530,1408049,1407738,1406982,1406448	1409733,1409231,1408928,1408619,1408241,1407909,1407219,1406782	S-adenosylmethionine-dependent methylase
chr13	1409874	1431831	1410341	1430989	+	SMG1	Cre13.g572050.t1.1		1409874,1410113,1410539,1410801,1411734,1412182,1414827,1415737,1416161,1416885,1417374,1417771,1418202,1419184,1420121,1420676,1420890,1421829,1422311,1422680,1423273,1423590,1423938,1424257,1424544,1424962,1425415,1428716,1429490,1429810,1430404	1409995,1410398,1410594,1411431,1411996,1414705,1415516,1416009,1416709,1417208,1417643,1417977,1419005,1419987,1420507,1420767,1421658,1421996,1422478,1423014,1423381,1423708,1424093,1424335,1424722,1425217,1428522,1429021,1429628,1430147,1431831	involved in nonsense mediated RNA decay; contains a Phosphatidylinositol 3-kinase and a FAT domain, like DNA-PKcs, ATM, ATR and TOR
chr13	1432258	1441773	1433122	1441542	-	Cre13.g572100.t1.1	Cre13.g572100.t1.1		1438245,1437235,1436792,1434269,1433581,1432258	1441773,1438059,1436908,1436515,1433739,1433197	
chr13	1441904	1447285	1442036	1446522	+	Cre13.g572150.t1.1	Cre13.g572150.t1.1		1441904,1442242,1442642,1442952,1443695,1444165,1444382,1444775	1442168,1442315,1442741,1443100,1443803,1444199,1444564,1447285	Related to GCN5; null-allele mutant was isolated (PMID 29743196)
chr13	1447330	1452573	1448012	1452262	-	Cre13.g572200.t1.2	Cre13.g572200.t1.2		1452063,1451550,1451222,1450530,1450185,1449615,1448718,1447330	1452573,1451596,1451359,1450611,1450351,1449773,1449265,1448403	
chr13	1452744	1457628	1453335	1457157	+	Cre13.g572250.t1.1	Cre13.g572250.t1.1		1452744,1455193,1455569,1455824,1456000,1456280,1456608	1455078,1455470,1455746,1455937,1456193,1456487,1457628	
chr13	1457684	1462432	1458372	1462194	+	Cre13.g572272.t1.2	Cre13.g572272.t1.2		1457684,1460230,1460606,1460861,1461037,1461317,1461645	1460115,1460507,1460783,1460974,1461230,1461524,1462432	
chr13	1462588	1465873	1464070	1465354	-	Cre13.g572312.t1.1	Cre13.g572312.t1.1		1465216,1464903,1462588	1465873,1465136,1464685	
chr13	1466169	1469513	1467199	1469134	-	HSP22G	Cre13.g572350.t1.2		1468745,1468492,1467847,1466169	1469513,1468516,1468158,1467562	small heat shock protein containing an alpha-crystallin domain; N-terminus by ChloroP predicted to be chloroplast transit peptide; PMID: 16143837
chr13	1470124	1472437	1470216	1472139	+	Cre13.g572375.t1.1	Cre13.g572375.t1.1		1470124,1470380,1471215,1471733,1472016	1470248,1471059,1471492,1471837,1472437	
chr13	1470124	1472835	1470216	1472139	+	Cre13.g572375.t2.1	Cre13.g572375.t2.1		1470124,1470380,1471215,1471733,1472016	1470248,1471059,1471492,1471837,1472835	
chr13	1472841	1476683	1475839	1476119	-	Cre13.g572401.t1.1	Cre13.g572401.t1.1		1472841	1476683	
chr13	1476738	1479883	1476833	1479252	-	Cre13.g572450.t1.2	Cre13.g572450.t1.2		1479632,1478831,1477106,1476738	1479883,1479252,1478541,1476869	
chr13	1479984	1483986	1480105	1483481	+	CGL14	Cre13.g572500.t1.2		1479984,1480401,1480782,1481329,1481721,1482135,1482676,1483184	1480167,1480524,1480909,1481460,1481845,1482412,1482855,1483986	
chr13	1484034	1487112	1484214	1486726	+	Cre13.g572550.t1.1	Cre13.g572550.t1.1		1484034,1484298,1484581,1484791,1485130,1485400,1485760,1486126,1486542	1484223,1484329,1484693,1484938,1485262,1485531,1485816,1486253,1487112	
chr13	1487632	1491923	1489612	1491090	-	Cre13.g572600.t1.2	Cre13.g572600.t1.2		1491641,1490933,1490655,1490255,1489920,1487632	1491923,1491168,1490758,1490445,1490018,1489670	
chr13	1492236	1497123	1492469	1497050	-	Cre13.g572650.t1.1	Cre13.g572650.t1.1		1497035,1496856,1496607,1496401,1496040,1495662,1495281,1494903,1494361,1493929,1493583,1492236	1497123,1496954,1496693,1496448,1496213,1495832,1495448,1495063,1494568,1494156,1493722,1493439	
chr13	1497506	1506919	1498052	1506678	-	IFT144	Cre13.g572700.t1.2		1506576,1506387,1506182,1505807,1505259,1504979,1504806,1504477,1504001,1503717,1503287,1502726,1502370,1501918,1501508,1501141,1500744,1500542,1499900,1499488,1499153,1498875,1498504,1497506	1506919,1506497,1506289,1505920,1505393,1505038,1504856,1504649,1504181,1503817,1503506,1502952,1502585,1502170,1501699,1501294,1500970,1500604,1500397,1499708,1499321,1499005,1498682,1498270	Flagellar Associated Protein, component of core of IFT-A particle; found in the flagellar proteome [PMID: 15998802]
chr13	1507054	1511609	1507230	1511543	-	Cre13.g572732.t1.2	Cre13.g572732.t1.2		1511419,1511074,1510183,1507054	1511609,1511200,1510891,1510029	
chr13	1511923	1520169	1512011	1519959	-	AMX3	Cre13.g572750.t1.1		1519940,1519719,1519599,1519152,1518303,1517815,1517600,1517224,1516990,1516739,1516293,1515965,1515708,1515514,1515226,1514845,1514606,1514421,1514210,1513999,1513831,1513481,1513249,1512990,1512711,1512418,1511923	1520169,1519804,1519655,1519245,1518378,1517950,1517712,1517328,1517032,1516798,1516447,1516143,1515819,1515544,1515340,1515051,1514713,1514485,1514217,1514075,1513904,1513527,1513323,1513114,1512784,1512548,1512249	Amiloride-binding protein (ABP); (Histaminase); Diamine oxidase (DAO); could be involved in putrescine degradation; functions as a homodimer, each subunit containing a Cu ion and a 2,4,5-trihydroxyphenylalanine quinone (TPQ) cofactor
chr13	1511923	1520169	1512011	1519959	-	AMX3	Cre13.g572750.t2.1		1519940,1519719,1519599,1519152,1518303,1517815,1517600,1517224,1516990,1516739,1516429,1515965,1515708,1515514,1515226,1514845,1514606,1514421,1514210,1513999,1513831,1513481,1513249,1512990,1512711,1512418,1511923	1520169,1519804,1519655,1519245,1518378,1517950,1517712,1517328,1517032,1516798,1516447,1516096,1515819,1515544,1515340,1515051,1514713,1514485,1514217,1514075,1513904,1513527,1513323,1513114,1512784,1512548,1512249	Amiloride-binding protein (ABP); (Histaminase); Diamine oxidase (DAO); could be involved in putrescine degradation; functions as a homodimer, each subunit containing a Cu ion and a 2,4,5-trihydroxyphenylalanine quinone (TPQ) cofactor
chr13	1511923	1520169	1512011	1519959	-	AMX3	Cre13.g572750.t3.1		1519940,1519719,1519599,1519152,1518303,1517815,1517600,1517224,1516990,1516726,1515965,1515708,1515514,1515226,1514845,1514606,1514421,1514210,1513999,1513831,1513481,1513249,1512990,1512711,1512418,1511923	1520169,1519804,1519655,1519245,1518378,1517950,1517712,1517328,1517032,1516798,1516096,1515819,1515544,1515340,1515051,1514713,1514485,1514217,1514075,1513904,1513527,1513323,1513114,1512784,1512548,1512249	Amiloride-binding protein (ABP); (Histaminase); Diamine oxidase (DAO); could be involved in putrescine degradation; functions as a homodimer, each subunit containing a Cu ion and a 2,4,5-trihydroxyphenylalanine quinone (TPQ) cofactor
chr13	1520234	1524219	1521145	1523930	-	TILS	Cre13.g572800.t1.1		1523537,1523194,1522827,1520234	1524219,1523370,1522951,1522658	adds lysine moiety to anticodon base on trnI-CAU, to allow reading Ile AUA codon
chr13	1524320	1535411	1524583	1534883	+	FBB17	Cre13.g572850.t1.1		1524320,1524865,1525135,1525401,1525822,1526335,1527403,1527879,1528246,1528796,1529415,1529837,1530203,1530723,1531136,1531875,1532257,1532697,1533263,1533571,1534054	1524638,1524943,1525271,1525548,1525903,1527051,1527567,1527984,1528373,1528958,1529580,1529945,1530354,1530866,1531343,1532045,1532505,1532825,1533322,1533767,1535411	Conserved protein found in ciliated organisms, unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr13	1535496	1544450	1535774	1544410	-	THO3	Cre13.g572900.t1.1		1544216,1543768,1543421,1542893,1542241,1541699,1541238,1540648,1540260,1539785,1539388,1538987,1538530,1538126,1537730,1537382,1536920,1536534,1536211,1535496	1544450,1543852,1543515,1542995,1542329,1541822,1541327,1540853,1540317,1539859,1539518,1539098,1538613,1538306,1537815,1537511,1537053,1536602,1536324,1535951	belongs to M3 family of metalloproteases, like thimet oligopeptidase; most similar to higher plant homologues; possibly organelle-targetted, like At5g65620
chr13	1535496	1544439	1535774	1543843	-	THO3	Cre13.g572900.t2.1		1544216,1543768,1543421,1542893,1542241,1541699,1541238,1540648,1540260,1539785,1539388,1538987,1538530,1538126,1537730,1537382,1536920,1536534,1536211,1535496	1544439,1543855,1543515,1542995,1542329,1541822,1541327,1540853,1540317,1539859,1539518,1539098,1538613,1538306,1537815,1537511,1537053,1536602,1536324,1535951	belongs to M3 family of metalloproteases, like thimet oligopeptidase; most similar to higher plant homologues; possibly organelle-targetted, like At5g65620
chr13	1545378	1551709	1548205	1551357	-	E2F2	Cre13.g572950.t1.1		1551162,1550414,1550131,1545378	1551709,1550788,1550201,1549889	Related to E2F and DP transcription factors, Chlamydomonas specific.  Previously annotated as E2FR1; null-allele passenger mutation was isolated (PMID 29743196)
chr13	1551815	1557489	1552087	1557327	-	E2FR1	Cre13.g573000.t1.2		1557270,1556890,1556414,1555916,1555470,1555069,1554620,1553457,1553051,1551815	1557489,1556986,1556624,1556156,1555605,1555202,1554706,1553578,1553192,1552633	
chr13	1557610	1560876	1557798	1560454	+	Cre13.g573050.t1.2	Cre13.g573050.t1.2		1557610,1558295,1558675,1559095,1559463,1560005,1560298	1557854,1558385,1558766,1559173,1559806,1560059,1560876	
chr13	1561039	1569811	1561483	1569310	+	MAM3C	Cre13.g573100.t1.1		1561039,1561464,1561741,1562276,1562564,1562864,1563140,1563579,1564007,1564403,1564837,1565238,1565595,1565920,1566347,1567707,1568140,1568491	1561352,1561486,1561869,1562305,1562643,1562919,1563231,1563654,1564101,1564528,1564903,1565290,1565644,1566181,1567369,1567804,1568218,1569811	contains a DUF21 transmembrane domain of unknown function and 2 CBS domains (found in Hemolysins and Mg2+/CO2 transporters CorB CorC); similarity to many Arabidopsis proteins and to yeast Mam3p, involved in mitochondrial biogenesis
chr13	1569814	1580756	1570986	1580585	-	Cre13.g573150.t1.1	Cre13.g573150.t1.1		1580279,1579559,1579304,1578802,1578422,1577959,1577535,1577256,1576904,1576557,1576057,1575579,1575075,1574601,1573985,1573425,1573041,1572646,1572161,1571526,1569814	1580756,1579630,1579387,1578907,1578432,1578055,1577619,1577301,1577011,1576589,1576158,1575695,1575197,1574671,1574086,1573509,1573103,1572717,1572237,1571654,1571278	null-allele mutant was isolated (PMID 29743196)
chr13	1580860	1585541	1581797	1585126	+	Cre13.g573200.t1.2	Cre13.g573200.t1.2		1580860,1581548,1582472,1583020,1583691,1584346,1584679	1581388,1582336,1582693,1583386,1584115,1584454,1585541	
chr13	1585643	1588029	1586350	1587978	-	Cre13.g573250.t1.2	Cre13.g573250.t1.2		1587774,1587299,1586856,1585643	1588029,1587478,1587024,1586493	
chr13	1588304	1591109	1589024	1590975	-	CDD4	Cre13.g573300.t1.1		1590180,1588304	1591109,1589717	
chr13	1591257	1595651	1591276	1594058	+	Cre13.g573351.t1.2	Cre13.g573351.t1.2		1591257,1591401,1591528,1592447,1593429,1594009	1591288,1591424,1591585,1592587,1593573,1595651	
chr13	1595759	1598716	1596354	1597677	+	Cre13.g573400.t1.2	Cre13.g573400.t1.2		1595759,1596346,1596691,1597045,1597452	1595845,1596544,1596863,1597185,1598716	
chr13	1599130	1616455	1599570	1616193	+	Cre13.g573450.t1.2	Cre13.g573450.t1.2		1599130,1599760,1600135,1600796,1601419,1601791,1602367,1602889,1603298,1603756,1604302,1604919,1605334,1607655,1608139,1608792,1609100,1609987,1610380,1610877,1611301,1611646,1612089,1612429,1612860,1613247,1613605,1614040,1614317,1614734,1615128,1615536,1615887,1616163	1599594,1599995,1600365,1601114,1601526,1601879,1602541,1603032,1603403,1603868,1604710,1605040,1605959,1607730,1608210,1608857,1609789,1610070,1610670,1611026,1611392,1611735,1612252,1612524,1612947,1613297,1613800,1614093,1614458,1614860,1615277,1615612,1616002,1616455	Contains MMS1_N and CPSF_A domains typical of U2 snRNP-associated protein Sap130
chr13	1616617	1619116	1616698	1618687	+	FAP95	Cre13.g573500.t1.2		1616617,1616867,1617250,1617984,1618492	1616775,1617035,1617343,1618156,1619116	Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG12 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]
chr13	1619340	1628826	1619745	1627898	+	ANK26	Cre13.g573550.t1.1		1619340,1619705,1620316,1620612,1620990,1621441,1621859,1622116,1622403,1622754,1623153,1623589,1624011,1624777,1627751	1619461,1620000,1620381,1620741,1621162,1621614,1621904,1622207,1622522,1622902,1623222,1623738,1624526,1627557,1628826	protein of unknown function with ankyrin repeats
chr13	1628854	1631389	1629052	1631207	-	Cre13.g573600.t1.2	Cre13.g573600.t1.2		1631006,1630779,1630291,1629957,1628854	1631389,1630832,1630501,1630057,1629802	
chr13	1632414	1635989	1633172	1635936	-	SRS5	Cre13.g573650.t1.1		1635841,1635592,1634635,1634255,1633475,1632414	1635989,1635669,1634737,1634418,1633918,1633308	SC35-like splicing factor, 27 kD (SCL27).  Contains serine/arginine rich domain and RNA recognition motif
chr13	1636190	1638871	1636616	1638464	+	Cre13.g573700.t1.2	Cre13.g573700.t1.2		1636190,1637104,1637685	1636769,1637377,1638871	
chr13	1638874	1642241	1639853	1642024	-	Cre13.g573750.t1.2	Cre13.g573750.t1.2		1641780,1641488,1641313,1640906,1640390,1638874	1642241,1641609,1641341,1641093,1640720,1640181	
chr13	1642420	1649011	1642545	1647689	+	Cre13.g573800.t1.2	Cre13.g573800.t1.2		1642420,1642904,1643446,1643902,1644207,1644467,1644835,1645239,1645675,1646022,1646469,1646902,1647428,1647668	1642712,1642947,1643513,1644024,1644249,1644532,1644931,1645335,1645744,1646250,1646586,1647022,1647483,1649011	
chr13	1649054	1650119	1649646	1650031	-	Cre13.g573850.t1.1	Cre13.g573850.t1.1		1650007,1649054	1650119,1649877	
chr13	1650853	1655431	1651076	1654538	+	NSS3	Cre13.g573900.t1.2		1650853,1651490,1651701,1652071,1652463,1652759,1653114,1653563	1651196,1651584,1651887,1652275,1652629,1652878,1653386,1655431	Sodium:solute symporter.  Resembles a Na+/pantothenate symporter, but solute may actually be thiamine
chr13	1658225	1661356	1658310	1660483	+	ZRT3	Cre13.g573950.t1.1		1658225,1658654,1659083,1659774,1660138	1658496,1658747,1659568,1659889,1661356	related to Zinc transporter (ZIP); formerly ZIP3 in PMID: 15710683; PMID: 16766055
chr13	1661845	1673866	1662139	1673071	+	CLV1	Cre13.g574000.t1.1		1661845,1662718,1663177,1663495,1663769,1664115,1664447,1664653,1664829,1665114,1665491,1666206,1666596,1667048,1667461,1667801,1669647,1669908,1670300,1671522	1662406,1662834,1663208,1663586,1663908,1664269,1664517,1664708,1664894,1665218,1666021,1666334,1666877,1667191,1667516,1669349,1669739,1669992,1671374,1673866	
chr13	1674015	1676376	1674096	1675992	+	Cre13.g574041.t1.1	Cre13.g574041.t1.1		1674015,1674755,1675143,1675415,1675653	1674593,1674944,1675228,1675466,1676376	
chr13	1676425	1679186	1676460	1678817	+	Cre13.g574050.t1.1	Cre13.g574050.t1.1		1676425,1676847,1677229,1677579,1677991,1678269,1678451	1676607,1677004,1677426,1677774,1678128,1678325,1679186	
chr13	1679245	1682436	1679885	1682008	+	Cre13.g574100.t1.1	Cre13.g574100.t1.1		1679245,1679784,1680138,1680489,1680884,1681342,1681588	1679552,1679941,1680335,1680684,1681021,1681398,1682436	
chr13	1682485	1686781	1682626	1686253	+	Cre13.g574150.t1.1	Cre13.g574150.t1.1		1682485,1683004,1683458,1683902,1684308,1684785,1685020,1685286,1685770,1686075	1682840,1683114,1683602,1684060,1684654,1684861,1685138,1685358,1685867,1686781	Possible dihydrolipoyl dehydrogenase
chr13	1686831	1691746	1687307	1691244	+	PAP2	Cre13.g574200.t1.1		1686831,1687141,1688557,1688931,1689261,1689579,1689814,1690049,1690395,1690838,1691106	1686990,1688215,1688705,1689061,1689374,1689695,1689900,1690193,1690522,1690939,1691746	non-canonical Poly(A) polymerase (ncPAP) with PAP/25A core domain; has orthologs in Chlorophyceae only; predicted chloroplast targeted, like most  orthologs
chr13	1691805	1697916	1691840	1697318	+	Cre13.g574250.t1.1	Cre13.g574250.t1.1		1691805,1691956,1692446,1692789,1693131,1693483,1693715,1694039,1694410,1694797,1695003,1695259,1695415,1695669,1695871,1696385	1691872,1692340,1692622,1693026,1693380,1693564,1693852,1694182,1694629,1694891,1695153,1695337,1695514,1695741,1696166,1697916	
chr13	1697975	1704676	1698345	1703959	+	Cre13.g574300.t1.1	Cre13.g574300.t1.1		1697975,1698648,1698869,1699004,1699269,1699693,1700099,1700347,1700608,1700919,1701344,1701696,1701952,1702145,1702374,1702604,1703050	1698516,1698655,1698933,1699104,1699506,1699942,1700180,1700484,1700751,1701102,1701435,1701846,1702030,1702241,1702446,1702899,1704676	
chr13	1708475	1716446	1708605	1714834	+	Cre13.g574350.t1.2	Cre13.g574350.t1.2		1708475,1708821,1709488,1709892,1710245,1710613,1710936,1711292,1711533,1711816,1712099,1712521,1712785,1713024,1713207,1713402,1713632,1714078	1708647,1709228,1709560,1709992,1710485,1710745,1711076,1711373,1711670,1711959,1712270,1712612,1712935,1713099,1713291,1713474,1713927,1716446	
chr13	1716525	1718766	1716631	1716914	+	Cre13.g574375.t1.2	Cre13.g574375.t1.2		1716525	1718766	
chr13	1718825	1732873	1719457	1731325	+	CYG55	Cre13.g574400.t1.1		1718825,1719421,1724191,1724413,1726007,1726261,1729921,1730260,1730612,1730740,1730927,1731158	1719140,1724038,1724265,1725850,1726140,1729732,1730052,1730460,1730637,1730772,1731011,1732873	Protein with domain similar to Guanylate cyclase soluble, beta-2 chain (GCS-beta-2) [Bos taurus]
chr13	1736131	1740604	1736546	1740477	-	FER2	Cre13.g574500.t1.1		1740282,1739927,1739184,1738799,1738410,1737996,1737686,1737425,1737218,1736131	1740604,1740028,1739263,1738900,1738452,1738062,1737777,1737481,1737256,1736666	Ferritin, chloroplast precursor; pre-apoferritin gi|253724|gb|AF53338; null-allele mutant was isolated (PMID 29743196)
chr13	1740715	1744136	1740748	1743664	+	Cre13.g574551.t1.1	Cre13.g574551.t1.1		1740715,1741350,1741685,1742133,1742553,1742890,1743301	1741231,1741451,1741769,1742204,1742641,1742964,1744136	
chr13	1744265	1750061	1744414	1748235	+	Cre13.g574600.t1.2	Cre13.g574600.t1.2		1744265,1744954,1745146,1745406	1744521,1745043,1745212,1750061	
chr13	1750069	1754864	1750385	1754364	-	Cre13.g574650.t1.1	Cre13.g574650.t1.1		1754157,1753633,1752779,1752439,1751988,1751537,1751163,1750855,1750069	1754864,1754051,1753421,1752579,1752167,1751827,1751310,1750949,1750616	
chr13	1755015	1757036	1755180	1756663	+	PEX13	Cre13.g574700.t1.2		1755015,1755410	1755187,1757036	Contains a Src homology 3 (SH3) domain; an essential component of the import machinery for peroxisomal matrix proteins; binds to the peroxisomal targeting type I (PTS1) receptor Pex5
chr13	1757039	1762734	1757645	1762623	-	Cre13.g574750.t1.1	Cre13.g574750.t1.1		1762573,1762387,1761935,1761723,1761313,1760365,1759964,1759343,1758693,1758303,1757965,1757039	1762734,1762495,1762162,1761801,1761533,1761180,1760129,1759818,1759178,1758555,1758161,1757837	
chr13	1757039	1762734	1757645	1762623	-	Cre13.g574750.t2.1	Cre13.g574750.t2.1		1762573,1762387,1761935,1761723,1761385,1760365,1759964,1759343,1758693,1758303,1757965,1757039	1762734,1762495,1762162,1761801,1761533,1761180,1760129,1759818,1759178,1758555,1758161,1757837	
chr13	1762835	1764956	1763009	1764060	+	CYB3	Cre13.g574800.t1.2		1762835,1763202,1763368,1763494,1763802	1763084,1763270,1763400,1763607,1764956	
chr13	1762835	1764848	1763009	1764060	+	CYB3	Cre13.g574800.t2.1		1762835,1763202,1763368,1763494,1763802	1763084,1763270,1763400,1763607,1764848	
chr13	1764895	1777118	1764950	1776348	+	ERM6	Cre13.g574850.t1.1		1764895,1765154,1765581,1765763,1766025,1766189,1766427,1766734,1766985,1767421,1767970,1768603,1769505,1769738,1770050,1770628,1772724,1773037,1773356,1773709,1774052,1774250,1774543,1774982,1775288,1775757,1776173	1765053,1765192,1765669,1765824,1766094,1766258,1766535,1766837,1767154,1767827,1768450,1769310,1769606,1769829,1770265,1772525,1772815,1773165,1773487,1773892,1774106,1774400,1774763,1775109,1775508,1775878,1777118	flavohemoprotein b5/b5R-like protein.
chr13	1765005	1777118	1765059	1776348	+	ERM6	Cre13.g574850.t2.1		1765005,1765154,1765581,1765763,1766025,1766189,1766427,1766734,1766985,1767421,1767970,1768603,1769505,1769738,1770050,1770628,1772724,1773037,1773356,1773709,1774052,1774250,1774543,1774982,1775288,1775757,1776173	1765075,1765192,1765669,1765824,1766094,1766258,1766535,1766837,1767154,1767827,1768450,1769310,1769606,1769829,1770265,1772525,1772815,1773165,1773487,1773892,1774106,1774400,1774763,1775109,1775508,1775878,1777118	flavohemoprotein b5/b5R-like protein.
chr13	1777367	1792924	1778318	1792453	-	FAP228	Cre13.g574900.t1.2		1792682,1792044,1791490,1791002,1790167,1789595,1788930,1788592,1788225,1787942,1783492,1782584,1782148,1781855,1781486,1780068,1779262,1778872,1777367	1792924,1792506,1791953,1791226,1790318,1789948,1789385,1788789,1788417,1788073,1787814,1783338,1782392,1781985,1781706,1781357,1779901,1779063,1778717	Glycosyl transferase, GT48 family, possible 1,3-beta-D-glucan synthase, similar to callose synthase; found in the flagellar proteome; null-allele mutant was isolated (PMID 29743196)
chr13	1793885	1795126	1794070	1794929	-	Cre13.g574950.t1.1	Cre13.g574950.t1.1		1793885	1795126	
chr13	1795403	1799964	1795768	1799717	-	CCS1	Cre13.g575000.t1.1		1799593,1799098,1798690,1798383,1798125,1797792,1797578,1796564,1796190,1795403	1799964,1799411,1798878,1798505,1798274,1797923,1797670,1796861,1796372,1796004	Protein required for cytochrome c synthesis/biogenesis with homology to ResB, Ycf44 [PMID: 12427747; PMID: 9395519]; mutated in ac26 mutant
chr13	1800349	1802484	1801056	1802439	-	Cre13.g575050.t1.2	Cre13.g575050.t1.2		1802430,1800349	1802484,1802295	
chr13	1802585	1811196	1802630	1809979	+	Cre13.g575101.t1.2	Cre13.g575101.t1.2		1802585,1802751,1805325,1805541,1806133,1807288,1809132	1802678,1802874,1805366,1805844,1806922,1807679,1811196	
chr13	1811371	1820454	1812938	1820394	-	Cre13.g575150.t1.1	Cre13.g575150.t1.1		1820150,1818949,1818562,1818290,1817742,1817178,1816880,1816598,1811371	1820454,1819842,1818809,1818462,1818125,1817610,1817047,1816695,1816473	
chr13	1820585	1823586	1820656	1822961	+	Cre13.g575175.t1.1	Cre13.g575175.t1.1		1820585,1820997,1822662,1822936	1820710,1822558,1822790,1823586	
chr13	1823688	1830194	1824300	1829528	+	Cre13.g575200.t1.1	Cre13.g575200.t1.1		1823688,1824224,1824704,1825249,1825675,1825921,1826242,1826563,1826943	1823979,1824553,1824734,1825408,1825789,1826129,1826358,1826728,1830194	
chr13	1830381	1845197	1830644	1845146	-	Cre13.g575250.t1.1	Cre13.g575250.t1.1		1844936,1844665,1844293,1844043,1843651,1843365,1843104,1842615,1842089,1841581,1841176,1840728,1840304,1839997,1838911,1838689,1837291,1836933,1835953,1835497,1835025,1834678,1834369,1833705,1833221,1832792,1832300,1831856,1830381	1845197,1844808,1844382,1844141,1843948,1843510,1843147,1842887,1842425,1841734,1841324,1840939,1840522,1840105,1839705,1838748,1838361,1837028,1836675,1835680,1835194,1834755,1834435,1834261,1833550,1833100,1832650,1832164,1831709	null-allele mutant was isolated (PMID 29743196)
chr13	1845282	1850523	1845703	1850410	-	Cre13.g575300.t1.1	Cre13.g575300.t1.1		1850197,1849855,1849594,1849183,1848852,1848414,1848032,1847781,1847441,1847009,1846309,1845282	1850523,1849994,1849666,1849311,1849003,1848588,1848245,1847878,1847566,1847198,1846826,1846135	
chr13	1850658	1851989	1850700	1851968	+	Cre13.g575333.t1.1	Cre13.g575333.t1.1		1850658,1851041,1851286,1851643,1851938	1850898,1851133,1851421,1851797,1851989	
chr13	1852038	1854469	1852088	1854423	+	Cre13.g575366.t1.1	Cre13.g575366.t1.1		1852038,1852437,1852839,1853924,1854129	1852181,1852715,1853797,1853981,1854469	
chr13	1854518	1858119	1854649	1857187	+	Cre13.g575400.t1.1	Cre13.g575400.t1.1		1854518,1855179,1855431,1855918,1856304,1856541,1856850	1854979,1855305,1855573,1856049,1856392,1856657,1858119	
chr13	1858168	1860609	1858701	1860582	+	Cre13.g575450.t1.1	Cre13.g575450.t1.1		1858168,1858612,1858872,1859226,1859797,1860125	1858381,1858732,1859014,1859360,1859885,1860609	
chr13	1858168	1860609	1858701	1860582	+	Cre13.g575450.t2.1	Cre13.g575450.t2.1		1858168,1858612,1858872,1859226,1859797,1860125	1858333,1858732,1859014,1859360,1859885,1860609	
chr13	1860645	1866167	1861799	1865007	-	Cre13.g575500.t1.1	Cre13.g575500.t1.1		1865688,1865534,1865186,1864708,1863629,1862872,1860645	1866167,1865584,1865236,1865011,1864418,1863290,1862628	
chr13	1868378	1871879	1868749	1871476	+	Cre13.g575550.t1.2	Cre13.g575550.t1.2		1868378,1869298,1869763,1870289,1870635,1871010	1869079,1869424,1869905,1870423,1870723,1871879	
chr13	1872428	1876728	1872664	1876163	+	Cre13.g575600.t1.2	Cre13.g575600.t1.2		1872428	1876728	
chr13	1876898	1880429	1877246	1880356	+	Cre13.g575650.t1.1	Cre13.g575650.t1.1		1876898,1877500,1877850,1878296,1878693,1878912,1879210,1879521,1879996	1877343,1877674,1877991,1878414,1878716,1878995,1879339,1879724,1880429	
chr13	1880440	1882337	1880968	1881857	-	Cre13.g575701.t1.1	Cre13.g575701.t1.1		1882243,1881844,1881563,1881240,1880440	1882337,1881938,1881587,1881342,1881034	
chr13	1882391	1887117	1882827	1886703	-	Cre13.g575750.t1.2	Cre13.g575750.t1.2		1886415,1885815,1885126,1884805,1884429,1884143,1883705,1883209,1882391	1887117,1886095,1885327,1884957,1884495,1884247,1883766,1883262,1882935	
chr13	1887218	1889385	1887317	1889316	+	Cre13.g575776.t1.1	Cre13.g575776.t1.1		1887218,1887887,1888988,1889173	1887593,1888723,1889015,1889385	
chr13	1889412	1894017	1889976	1893641	-	IGS1	Cre13.g575800.t1.2		1893561,1893236,1892883,1892195,1891752,1891343,1890717,1889412	1894017,1893374,1892972,1892332,1891805,1891450,1890833,1890126	Possible indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS; trpC); involved in tryptophan biosynthesis
chr13	1894252	1896139	1894342	1896081	+	Cre13.g575850.t1.2	Cre13.g575850.t1.2		1894252,1894850,1895163,1895492,1895890	1894621,1894938,1895227,1895587,1896139	
chr13	1896142	1901577	1897099	1901435	-	SE	Cre13.g575900.t1.2		1901199,1900978,1900523,1899486,1899260,1898021,1897522,1896142	1901577,1901076,1900687,1900335,1899318,1898123,1897804,1897326	
chr13	1901688	1907749	1901796	1907674	+	HIR1	Cre13.g575950.t1.2		1901688,1902289,1902634,1903004,1903272,1903664,1904073,1905413,1905789,1906163,1906487,1906776,1907040,1907512	1901836,1902470,1902795,1903078,1903376,1903854,1905192,1905586,1906038,1906318,1906602,1906883,1907327,1907749	Similar to HIRA, ChromDB HIRA341; WD repeat superfamily
chr13	1907762	1910467	1908361	1910154	-	Cre13.g576000.t1.1	Cre13.g576000.t1.1		1910080,1909778,1909530,1909236,1909035,1908811,1908557,1907762	1910467,1909896,1909605,1909290,1909069,1908888,1908611,1908427	
chr13	1910608	1917739	1910780	1916984	+	ZIP2	Cre13.g576050.t1.1		1910608,1910999,1911352,1911955,1912385,1912946,1915098,1916272,1916837	1910887,1911071,1911636,1912084,1912616,1914695,1915229,1916415,1917739	related to mammalian homologs; (CrZIP13); PMID: 15710683; PMID: 16766055
chr13	1917868	1923979	1918922	1922704	+	Cre13.g576100.t1.1	Cre13.g576100.t1.1		1917868,1918490,1920836,1921049,1921501,1921937,1922154,1922307,1922680	1918386,1920566,1920880,1921201,1921680,1922057,1922236,1922498,1923979	
chr13	1923982	1930927	1925045	1930731	-	Cre13.g576150.t1.1	Cre13.g576150.t1.1		1929381,1928814,1928402,1928051,1927636,1927369,1926977,1926688,1926314,1925937,1925396,1923982	1930927,1928919,1928445,1928149,1927723,1927433,1927072,1926737,1926392,1926122,1925504,1925125	L-asparaginase, type I (EC:3.5.1.1)
chr13	1931569	1937899	1931842	1937486	+	Cre13.g576200.t1.2	Cre13.g576200.t1.2		1931569,1932224,1932892,1933209,1933675,1934165,1934582,1934985,1935350,1935882,1936197,1936710,1937130	1932015,1932443,1932966,1933293,1933843,1934330,1934683,1935101,1935403,1935950,1936340,1936845,1937899	
chr13	1937902	1943297	1938253	1943268	-	Cre13.g576250.t1.1	Cre13.g576250.t1.1		1942980,1942690,1941968,1941174,1940463,1940236,1939865,1937902	1943297,1942738,1942534,1941273,1940762,1940317,1939942,1939153	
chr13	1943362	1946295	1944090	1946140	-	APH1	Cre13.g576300.t1.2		1946030,1945903,1945629,1945223,1944844,1944494,1943362	1946295,1945952,1945731,1945374,1944893,1944628,1944213	homologous to anterior-pharynx-defective; forms the gamma-secretase complex with presenilin, nicastrin and pen-2; involved in regulated intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch
chr13	1946408	1948899	1946600	1948783	+	PFP2	Cre13.g576350.t1.2		1946408,1946946,1947303	1946750,1947154,1948899	
chr13	1948979	1951966	1949083	1951704	+	Cre13.g576400.t1.2	Cre13.g576400.t1.2		1948979,1949397,1949859,1950573,1951240,1951482	1949311,1949709,1950103,1950722,1951314,1951966	
chr13	1952182	1953227	1952676	1953200	-	Cre13.g576433.t1.1	Cre13.g576433.t1.1		1953105,1952182	1953227,1953025	
chr13	1953808	1954294	1953923	1954119	+	Cre13.g576466.t1.1	Cre13.g576466.t1.1		1953808	1954294	
chr13	1954478	1960349	1955049	1959943	+	Cre13.g576500.t1.1	Cre13.g576500.t1.1		1954478,1955309,1955524,1955750,1956123,1956700,1957216,1957652,1958320,1958700,1959098,1959581	1955169,1955360,1955581,1955801,1956296,1956928,1957325,1958086,1958369,1958967,1959320,1960349	
chr13	1960588	1964402	1961001	1962676	+	Cre13.g576550.t1.2	Cre13.g576550.t1.2		1960588,1960997,1961570,1961972,1962325	1960847,1961394,1961756,1962129,1964402	
chr13	1960588	1964402	1961001	1962676	+	Cre13.g576550.t2.1	Cre13.g576550.t2.1		1960588,1960977,1961570,1961972,1962325	1960847,1961394,1961756,1962129,1964402	
chr13	1967238	1984518	1967377	1983381	+	Cre13.g576600.t1.2	Cre13.g576600.t1.2		1967238,1967702,1968034,1968834,1969503,1970316,1970771,1971515,1972254,1972675,1973355,1973625,1974141,1974574,1975099,1975661,1976154,1976524,1976897,1977327,1980163	1967413,1967861,1968257,1969169,1969839,1970539,1971331,1971871,1972400,1972794,1973502,1973890,1974326,1974801,1975301,1975754,1976254,1976590,1977067,1979961,1984518	
chr13	1984674	1987559	1984870	1987129	+	HIS4	Cre13.g576650.t1.2		1984674,1985044,1985380,1985847,1986296,1986652,1987030	1984933,1985117,1985538,1986007,1986357,1986768,1987559	Histidine biosynthesis bifunctional protein hisIE, plastid precursor; includes: Phosphoribosyl-AMP cyclohydrolase (PRA-CH) (EC 3.5.4.19); Phosphoribosyl-ATP pyrophosphatase (PRA-PH) (EC 3.6.1.31).
chr13	2000253	2005027	2001309	2004716	-	Cre13.g576700.t1.1	Cre13.g576700.t1.1		2004538,2004015,2003693,2003344,2002830,2002262,2000253	2005027,2004249,2003894,2003550,2003018,2002515,2001856	
chr13	2005188	2006882	2005452	2005808	+	Cre13.g576720.t1.1	Cre13.g576720.t1.1		2005188,2005799	2005665,2006882	
chr13	2006920	2010405	2007250	2010226	-	Cre13.g576740.t1.1	Cre13.g576740.t1.1		2010013,2009762,2008393,2007508,2006920	2010405,2009887,2009452,2008284,2007250	
chr13	2006920	2010405	2007250	2010226	-	Cre13.g576740.t2.1	Cre13.g576740.t2.1		2010013,2009762,2008393,2007508,2006920	2010405,2009887,2009449,2008284,2007250	
chr13	2010858	2014768	2011385	2014701	-	Cre13.g576760.t1.1	Cre13.g576760.t1.1		2014532,2014303,2013981,2013056,2012271,2011732,2010858	2014768,2014348,2014071,2013177,2012778,2011827,2011472	
chr13	2014869	2020365	2014997	2020319	-	HIF	Cre13.g576800.t1.1		2019134,2018693,2018367,2017943,2017396,2017084,2016819,2016418,2016163,2015760,2015403,2014869	2020365,2018843,2018424,2018102,2017500,2017124,2016912,2016495,2016255,2015868,2015512,2015108	Putative prolyl 4-hydroxylase similar to EGg Laying defective family member (egl-9) in C. elegans involved in hypoxia response
chr13	2020466	2023617	2020689	2023592	+	Cre13.g576850.t1.2	Cre13.g576850.t1.2		2020466,2021751,2022351,2022836,2023304	2021486,2021916,2022522,2023041,2023617	
chr13	2023620	2026595	2024249	2026375	-	Cre13.g576900.t1.1	Cre13.g576900.t1.1		2026339,2026120,2025856,2025192,2024860,2023620	2026595,2026221,2025959,2025612,2024993,2024709	
chr13	2026696	2030438	2026913	2030191	+	Cre13.g576950.t1.1	Cre13.g576950.t1.1		2026696,2027278,2027865,2028115,2028443,2028723,2029227,2029659,2029980	2027024,2027679,2027968,2028209,2028614,2028900,2029339,2029733,2030438	
chr13	2031637	2033815	2031849	2033768	-	Cre13.g577000.t1.2	Cre13.g577000.t1.2		2033637,2033285,2033045,2032804,2032367,2031637	2033815,2033385,2033100,2032889,2032640,2032215	
chr13	2033936	2035639	2034050	2034938	+	Cre13.g577026.t1.1	Cre13.g577026.t1.1		2033936,2034479,2034904	2034077,2034582,2035639	
chr13	2035756	2040621	2035925	2040159	+	ELG7	Cre13.g577050.t1.1		2035756,2036080,2036224,2036302,2036590,2036937,2037393,2037657,2038014,2038443,2038715,2038999,2039288,2039679	2035951,2036181,2036230,2036435,2036777,2037087,2037457,2037821,2038192,2038540,2038805,2039124,2039443,2040621	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr13	2042871	2044565	2043246	2044389	-	ACP2	Cre13.g577100.t1.2		2044341,2044174,2044040,2043906,2043759,2042871	2044565,2044230,2044108,2043956,2043813,2043320	
chr13	2044706	2046863	2046277	2046566	+	Cre13.g577150.t1.2	Cre13.g577150.t1.2		2044706,2046149	2045276,2046863	
chr13	2047121	2052795	2048156	2052719	-	Cre13.g577201.t1.1	Cre13.g577201.t1.1		2052692,2051833,2050204,2047121	2052795,2052630,2051734,2048206	
chr13	2052906	2059388	2053038	2057872	+	GOX14	Cre13.g577250.t1.2		2052906,2053321,2053679,2053883,2054206,2054477,2054758,2055020,2055358,2055561,2057134,2057433,2057701	2053173,2053527,2053718,2053983,2054298,2054619,2054889,2055235,2055407,2055601,2057273,2057544,2059388	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); does not contain a hydroxyproline-rich region; next to GOX13
chr13	2059496	2064616	2059749	2064338	+	GOX13	Cre13.g577300.t1.2		2059496,2060013,2060701,2060909,2061220,2061497,2061776,2062080,2062546,2062777,2062991,2063266,2063501,2063899,2064167	2059803,2060402,2060740,2061009,2061312,2061639,2061907,2062298,2062598,2062817,2063108,2063354,2063640,2064010,2064616	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain; linked to GOX14
chr13	2064676	2073337	2065307	2072689	+	Cre13.g577352.t1.1	Cre13.g577352.t1.1		2064676,2065478,2065940,2066435,2066906,2067743,2068033,2068340,2068699,2070190,2071562	2065380,2065799,2066227,2066766,2067609,2067970,2068216,2068624,2070021,2070621,2073337	
chr13	2075690	2080695	2076189	2080352	-	ELG16	Cre13.g577400.t1.1		2080328,2080056,2079594,2079282,2078910,2078613,2078091,2077871,2077477,2077165,2075690	2080695,2080204,2079787,2079423,2078974,2078777,2078370,2077964,2077602,2077320,2076960	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr13	2081336	2092713	2082406	2091913	+	Cre13.g577450.t1.1	Cre13.g577450.t1.1		2081336,2082004,2082918,2083395,2084415,2085303,2085790,2086148,2087603,2087959,2088460,2089015,2089412,2089682,2090287,2090706,2091056,2091395,2091733	2081628,2082508,2082988,2083505,2084760,2085404,2085837,2086276,2087716,2088081,2088609,2089111,2089472,2089814,2090439,2090738,2091118,2091505,2092713	FAD-dependent; May contain additional coding sequence in intronic N-island PMID: 27175017
chr13	2092955	2096766	2093716	2096647	-	VTI1	Cre13.g577500.t1.2		2096544,2096373,2096011,2095480,2094563,2092955	2096766,2096431,2096172,2095605,2094697,2093938	Expressed Protein. Similar to VTI1, Qb-SNAREs involved in Golgi/Endosomal traffic.
chr13	2092955	2096766	2093716	2096647	-	VTI1	Cre13.g577500.t2.1		2096544,2096373,2096011,2095480,2092955	2096766,2096431,2096172,2095605,2093938	Expressed Protein. Similar to VTI1, Qb-SNAREs involved in Golgi/Endosomal traffic.
chr13	2096926	2102387	2097035	2101824	+	DDB2	Cre13.g577550.t1.2		2096926,2097659,2098252,2099222,2100248,2101106,2101469	2097341,2097921,2098332,2099722,2100448,2101243,2102387	Homologous to eukaryotic UV-DDB2(UV-damaged DNA binding complex subunit 2 protein); Nucleus
chr13	2102495	2105075	2103373	2104875	-	Cre13.g577600.t1.2	Cre13.g577600.t1.2		2104658,2104517,2104101,2102495	2105075,2104555,2104285,2103982	
chr13	2102495	2105075	2103373	2103803	-	Cre13.g577600.t2.1	Cre13.g577600.t2.1		2104658,2104517,2104101,2102495	2105075,2104555,2104285,2103982	
chr13	2107260	2111405	2107728	2111244	-	Cre13.g577650.t1.1	Cre13.g577650.t1.1		2109772,2107260	2111405,2109421	
chr13	2111455	2115065	2111760	2115038	-	Cre13.g577700.t1.2	Cre13.g577700.t1.2		2113446,2111455	2115065,2113279	
chr13	2115196	2116837	2115336	2116148	+	Cre13.g577750.t1.1	Cre13.g577750.t1.1		2115196,2115714,2115892,2116056	2115517,2115755,2115969,2116837	
chr13	2118604	2126565	2119179	2126213	-	Cre13.g577800.t1.1	Cre13.g577800.t1.1		2126012,2124814,2124372,2123827,2123235,2122856,2122488,2121931,2121440,2120697,2120389,2119682,2118604	2126565,2125738,2124496,2123909,2123367,2122981,2122604,2122173,2121587,2121243,2120452,2119981,2119398	
chr13	2128586	2130727	2128947	2130374	+	FKB20	Cre13.g577850.t1.1		2128586,2129118,2129493,2129746,2130171,2130314	2129012,2129313,2129555,2129867,2130246,2130727	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); probably targeted to thylakoid lumen (TP length 31 + RR motif); [PMID: 15701785]
chr13	2130729	2132645	2131970	2132554	-	Cre13.g577900.t1.2	Cre13.g577900.t1.2		2132242,2130729	2132645,2132144	
chr13	2132776	2136527	2133058	2136015	+	VPS60	Cre13.g577950.t1.2		2132776,2133485,2133878,2134532,2135280,2135940	2133147,2133596,2133997,2134636,2135429,2136527	Expressed Protein. Similar to VPS60, a SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes); exons missing in sequence gap supported by cDNA
chr13	2136576	2140607	2136668	2140273	+	Cre13.g578012.t1.1	Cre13.g578012.t1.1		2136576,2137160,2137654,2138090,2139334	2136869,2137291,2137785,2138563,2140607	
chr13	2179090	2182265	2179300	2182231	-	Cre13.g578050.t1.1	Cre13.g578050.t1.1		2182227,2182103,2181629,2179933,2179090	2182265,2182146,2181959,2181327,2179473	
chr13	2174440	2179035	2175591	2178945	-	Cre13.g578051.t1.2	Cre13.g578051.t1.2		2177491,2174440	2179035,2177281	
chr13	2140656	2145807	2140891	2145499	+	Cre13.g578074.t1.1	Cre13.g578074.t1.1		2140656,2143875	2142546,2145807	
chr13	2140656	2145927	2140891	2145499	+	Cre13.g578074.t2.1	Cre13.g578074.t2.1		2140656,2143875	2142546,2145927	
chr13	2154346	2174437	2154572	2174014	+	Cre13.g578100.t1.1	Cre13.g578100.t1.1		2154346,2154817,2155311,2155665,2156034,2156347,2156699,2157359,2157719,2157982,2158765,2159396,2159964,2160254,2160730,2161518,2162008,2162533,2162859,2163553,2164100,2164486,2165088,2165458,2166131,2166518,2167037,2167504,2167900,2168601,2169093,2169516,2169970,2170339,2171043,2171646,2172597,2173155,2173741	2154698,2154915,2155385,2155718,2156147,2156436,2156915,2157465,2157755,2158118,2158883,2159558,2160077,2160353,2160866,2161603,2162152,2162650,2163085,2163754,2164188,2164595,2165184,2165773,2166257,2166631,2167151,2167671,2168163,2168915,2169281,2169665,2170104,2170844,2171287,2172274,2172951,2173330,2174437	ts-lethal mutant was isolated (PMID 29743196)
chr13	2151472	2154254	2152102	2154085	-	Cre13.g578150.t1.2	Cre13.g578150.t1.2		2153948,2153493,2153123,2152499,2151472	2154254,2153571,2153181,2152600,2152274	Regulator of ribonuclease activity A (rraA)
chr13	2146760	2151425	2147533	2151215	-	Cre13.g578200.t2.1	Cre13.g578200.t2.1		2149596,2146760	2151425,2149124	
chr13	2145810	2151425	2146341	2151215	-	Cre13.g578200.t1.1	Cre13.g578200.t1.1		2149596,2146798,2145810	2151425,2149124,2146341	
chr13	2182316	2185935	2182759	2185687	-	Cre13.g578201.t1.1	Cre13.g578201.t1.1		2184895,2184350,2183817,2183644,2182316	2185935,2184694,2184156,2183706,2182905	in the M5U family; putative 23S rRNA (uracil-5-)-methyltransferase
chr13	2186526	2194585	2187310	2194137	+	MPA11	Cre13.g578350.t1.2		2186526,2187579,2187760,2188255,2188555,2188950,2189481,2189825,2190216,2190695,2191029,2191424,2191796,2192016,2192459,2192677,2193253,2193713,2194038	2187448,2187609,2187857,2188337,2188643,2189098,2189533,2189885,2190355,2190777,2191195,2191543,2191881,2192153,2192507,2192793,2193371,2193791,2194585	Metallophosphoesterase/metallo-dependent phosphatase with purpe acid phosphatase domain
chr13	2194600	2198205	2194998	2197975	-	Cre13.g578400.t1.2	Cre13.g578400.t1.2		2196665,2194600	2198205,2196415	
chr13	2198323	2209887	2199097	2209792	-	TSL1	Cre13.g578451.t1.1		2209406,2208803,2208188,2207519,2207134,2206577,2206123,2205752,2205230,2204848,2203880,2203275,2202763,2202099,2201544,2201152,2200915,2200487,2200080,2199591,2198323	2209887,2208935,2208324,2207639,2207292,2206726,2206231,2205909,2205394,2204926,2204078,2203350,2202831,2202275,2201609,2201283,2201046,2200597,2200181,2199638,2199271	
chr13	2210068	2227037	2210171	2226511	+	Cre13.g578501.t1.1	Cre13.g578501.t1.1		2210068,2210512,2210896,2211364,2211718,2212252,2212603,2212885,2213550,2214193,2214622,2214909,2215246,2215793,2216107,2216780,2217031,2217564,2218039,2218377,2218808,2219170,2219536,2220116,2220450,2220846,2221545,2222150,2222925,2223399,2224287,2224605	2210219,2210594,2211041,2211454,2211804,2212329,2212654,2213086,2213671,2214275,2214711,2214981,2215371,2215861,2216228,2216877,2217323,2217717,2218145,2218483,2218960,2219269,2219878,2220225,2220515,2220932,2221707,2222322,2223050,2223884,2224465,2227037	
chr13	2229402	2234577	2230136	2234459	-	Cre13.g578550.t1.2	Cre13.g578550.t1.2		2234415,2233937,2232929,2232099,2231687,2231168,2229402	2234577,2234027,2233716,2232662,2231798,2231252,2230879	
chr13	2234742	2241437	2235895	2241273	-	Cre13.g578600.t1.1	Cre13.g578600.t1.1		2239300,2238917,2238354,2237935,2237495,2236694,2236345,2234742	2241437,2239050,2238436,2238072,2237771,2237176,2236538,2236006	
chr13	2241558	2249107	2241712	2247567	+	CPLD10	Cre13.g578650.t1.1		2241558,2242873,2243324,2243789,2244159,2245003,2245480,2246059,2246623,2247002,2247465	2242354,2242965,2243416,2243936,2244400,2245080,2245597,2246211,2246672,2247115,2249107	Arabidopsis homolog is involved in psbA translation initiation; similar to Mitochondrial complex I intermediate-associated protein 30 and NmrA negative transcriptional regulator protein family.  Conserved in the plant lineage and Diatoms
chr13	2249718	2251679	2249859	2250331	+	Cre13.g578676.t1.1	Cre13.g578676.t1.1		2249718,2250087	2249867,2251679	
chr13	2251798	2254294	2251892	2252834	+	Cre13.g578700.t1.1	Cre13.g578700.t1.1		2251798,2252170,2252486,2252795	2252085,2252208,2252670,2254294	
chr13	2254299	2259840	2255263	2259711	-	TBA1	Cre13.g578750.t1.2		2259534,2259118,2258725,2258314,2257638,2257007,2256441,2255977,2254299	2259840,2259246,2258814,2258426,2257736,2257197,2256586,2256060,2255530	translation factor for chloroplast-encoded psbA gene; mutant has defect in translation of D1, PSII reaction center protein; chloroplast targeted; related to dehydrogenases
chr13	2259984	2261397	2260398	2261252	-	LYR5	Cre13.g578800.t1.2		2261198,2260944,2259984	2261397,2261018,2260581	Proteins in this family have been identified as a component of the higher eukaryotic NADH complex
chr13	2261518	2271639	2261699	2271224	+	MOT27	Cre13.g578850.t1.1		2261518,2261917,2262671,2264892,2265508,2266154,2267799,2268181,2268845,2269347,2269945,2271071	2261726,2262318,2264594,2265276,2265853,2267539,2267911,2268319,2268979,2269731,2270771,2271639	
chr13	2271788	2276712	2271949	2276172	+	MOT27	Cre13.g578900.t1.2		2271788,2272196,2273042,2273553,2273917,2274340,2275340,2276012	2272069,2272350,2273159,2273615,2273985,2274458,2275474,2276712	
chr13	2276732	2287267	2277283	2287062	-	Cre13.g578950.t1.1	Cre13.g578950.t1.1		2286973,2285384,2284315,2283846,2283190,2279374,2279140,2278743,2276732	2287267,2286821,2285184,2284048,2283665,2282914,2279235,2278929,2278594	
chr13	2287618	2297089	2287896	2296416	+	Cre13.g579000.t1.1	Cre13.g579000.t1.1		2287618,2288125,2288436,2288815,2289259,2289902,2290422,2291079,2291404,2291725,2292094,2292530,2294860,2295358,2295779	2287992,2288228,2288564,2288890,2289366,2290006,2290604,2291186,2291487,2291850,2292323,2294624,2295107,2295633,2297089	
chr13	2298298	2299749	2298376	2299612	+	Cre13.g579017.t2.1	Cre13.g579017.t2.1		2298298,2299185,2299509	2298505,2299276,2299749	
chr13	2297638	2299749	2298376	2299612	+	Cre13.g579017.t1.1	Cre13.g579017.t1.1		2297638,2298268,2299185,2299509	2297652,2298505,2299276,2299749	
chr13	2300294	2305247	2301906	2304448	-	Cre13.g579050.t1.2	Cre13.g579050.t1.2		2304309,2304013,2303653,2303399,2302199,2300294	2305247,2304167,2303830,2303560,2302377,2301933	has many homologs but only in C. reinhardtii
chr13	2306131	2307715	2306855	2307033	-	Cre13.g579076.t1.1	Cre13.g579076.t1.1		2306131	2307715	
chr13	2310493	2331227	2310702	2331183	-	APC1	Cre13.g579100.t1.1		2331096,2330801,2330427,2329958,2329288,2327460,2326854,2326022,2323855,2323419,2322920,2321626,2321094,2320589,2319973,2319350,2318123,2317612,2317038,2316143,2315461,2314914,2314339,2311345,2310493	2331227,2330937,2330490,2330128,2329467,2328838,2327257,2326531,2325859,2323694,2323188,2322654,2321300,2320827,2320076,2319515,2318505,2317888,2317295,2316584,2315604,2315017,2314614,2314105,2311094	Subunit 1 of Anaphase Promoting Complex. Cell cycle regulated E3 ubiquitin ligase. Ts-lethal mutant arrests with 2C DNA content and fails to initiate cleavage plane and complete mitosis (PMID 29743196)
chr13	2331436	2333372	2331660	2332729	+	Cre13.g579150.t1.2	Cre13.g579150.t1.2		2331436,2331908,2332515	2331809,2332006,2333372	
chr13	2333838	2341686	2334130	2340294	+	S6K1	Cre13.g579200.t1.2		2333838,2336204,2337070,2337578,2337978,2338661,2339291,2339989	2335804,2336578,2337141,2337699,2338136,2338761,2339488,2341686	Protein kinase that phosphorylates rpS6, mediating ribosomal processivity; activation is TOR-dependent
chr13	2341722	2345997	2342282	2345598	-	Cre13.g579250.t1.2	Cre13.g579250.t1.2		2344905,2341722	2345997,2344793	
chr13	2346345	2348917	2346823	2348699	-	Cre13.g579300.t1.1	Cre13.g579300.t1.1		2348599,2348404,2348193,2347669,2346345	2348917,2348436,2348238,2348041,2347456	
chr13	2351756	2355071	2354738	2355042	-	Cre13.g579326.t1.1	Cre13.g579326.t1.1		2351756	2355071	
chr13	2355126	2360141	2355884	2359749	-	Cre13.g579350.t1.1	Cre13.g579350.t1.1		2359648,2359461,2358251,2355126	2360141,2359492,2359245,2358044	
chr13	2360306	2378021	2361900	2377712	-	ERM8	Cre13.g579400.t1.1		2377644,2377385,2376917,2376286,2375859,2375401,2373692,2371996,2369641,2369135,2368321,2367583,2366939,2366476,2365981,2365487,2365171,2364739,2364301,2363743,2363332,2362632,2362353,2360306	2378021,2377484,2377048,2376355,2375885,2375561,2374960,2373426,2371482,2369359,2368519,2367655,2367067,2366613,2366043,2365550,2365204,2364840,2364416,2363875,2363421,2362729,2362493,2361912	transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration)
chr13	2378584	2381121	2379286	2380411	-	CST1	Cre13.g579450.t1.1		2380390,2380190,2379925,2379664,2378584	2381121,2380239,2380017,2379805,2379511	transmembrane protein; shows similarity to various transporters and permeases; highly expressed; small gene family on chromosome 13, appears specific to Chlamydomonadales
chr13	2381186	2388811	2381435	2388777	-	Cre13.g579500.t1.2	Cre13.g579500.t1.2		2385845,2385275,2384874,2384178,2383828,2382944,2382334,2381927,2381186	2388811,2385366,2384929,2384567,2383939,2383066,2382476,2382007,2381607	
chr13	2388872	2392521	2389378	2392390	-	CGL27	Cre13.g579550.t1.1		2392214,2391758,2391291,2390457,2389895,2388872	2392521,2391836,2391386,2390549,2390038,2389531	
chr13	2392712	2399423	2393415	2399401	+	Cre13.g579566.t1.1	Cre13.g579566.t1.1		2392712,2393383,2394285,2394978,2395636,2396460,2397031,2397401,2397800,2398323,2398579,2399061,2399380	2392857,2393687,2394582,2395102,2395843,2396768,2397142,2397543,2398085,2398402,2398647,2399177,2399423	
chr13	2392712	2399423	2393415	2399401	+	Cre13.g579566.t2.1	Cre13.g579566.t2.1		2392712,2393383,2394285,2394978,2395636,2396622,2397031,2397401,2397800,2398323,2398579,2399061,2399380	2392857,2393687,2394582,2395102,2395843,2396768,2397142,2397543,2398085,2398402,2398647,2399177,2399423	
chr13	2399436	2404101	2399646	2404075	-	Cre13.g579582.t1.1	Cre13.g579582.t1.1		2404064,2403595,2403269,2402894,2402526,2401883,2401573,2401318,2400898,2400425,2399957,2399436	2404101,2403727,2403403,2402980,2402669,2401989,2401639,2401395,2401086,2400542,2400018,2399718	
chr13	2404202	2410483	2404255	2408517	+	SSS3	Cre13.g579598.t1.1		2404202,2404360,2404684,2405174,2405765,2406026,2406261,2406535,2406913,2407437,2407924,2408451	2404291,2404383,2404841,2405417,2405833,2406092,2406358,2406627,2407068,2407542,2408057,2410483	Soluble starch synthase with similarity to plant starch synthase III (e.g., SS III from Vigna GenBank CAB4374.1); ADP-glucose alpha-1,4 glucan alpha-4-glucanotransferase; catalyses the transfer of aglucosyl moety of ADP-glucose to the non-reducing end of
chr13	2404202	2410483	2404255	2408517	+	SSS3	Cre13.g579598.t2.1		2404202,2404684,2405174,2405765,2406026,2406261,2406535,2406913,2407437,2407924,2408451	2404291,2404841,2405417,2405833,2406092,2406358,2406627,2407068,2407542,2408057,2410483	Soluble starch synthase with similarity to plant starch synthase III (e.g., SS III from Vigna GenBank CAB4374.1); ADP-glucose alpha-1,4 glucan alpha-4-glucanotransferase; catalyses the transfer of aglucosyl moety of ADP-glucose to the non-reducing end of
chr13	2410852	2423713	2411261	2420718	+	Cre13.g579650.t1.1	Cre13.g579650.t1.1		2410852,2411409,2411618,2411947,2412568,2414661,2415946,2417031,2417444,2418144,2418400,2418776,2419129,2419518,2419958,2420318,2420660	2411315,2411482,2411752,2412169,2414418,2415695,2416749,2417202,2417871,2418216,2418503,2418825,2419202,2419544,2420069,2420587,2423713	
chr13	2423948	2428961	2424519	2428742	-	Cre13.g579700.t1.2	Cre13.g579700.t1.2		2427326,2426405,2425151,2423948	2428961,2426986,2426317,2424957	
chr13	2429812	2439033	2429943	2438187	+	GLC1	Cre13.g579734.t1.1		2429812,2430045,2430560,2431071,2431356,2431751,2432295,2433031,2433673,2434066,2434411,2434917,2435682,2436152,2436522,2437042,2437563	2429977,2430267,2430713,2431109,2431505,2431874,2432427,2433106,2433724,2434159,2434594,2435125,2435827,2436296,2436666,2437218,2439033	Lectin involved in N-glycosylation
chr13	2439066	2441491	2440416	2441389	-	Cre13.g579767.t1.1	Cre13.g579767.t1.1		2439066	2441491	
chr13	2441566	2445771	2442016	2445704	-	Cre13.g579800.t1.2	Cre13.g579800.t1.2		2445452,2445098,2444694,2444303,2443998,2443777,2443322,2442764,2442376,2441566	2445771,2445177,2444743,2444361,2444112,2443832,2443400,2442868,2442491,2442139	
chr13	2445872	2451893	2445972	2450967	+	Cre13.g579850.t1.2	Cre13.g579850.t1.2		2445872,2446198,2446430,2446954,2448838,2449787,2450272,2450808	2446120,2446271,2446516,2447244,2448972,2450026,2450418,2451893	
chr13	2445872	2451893	2445972	2450967	+	Cre13.g579850.t2.1	Cre13.g579850.t2.1		2445872,2446198,2446430,2446954,2448838,2449787,2450272,2450808	2446120,2446271,2446513,2447244,2448972,2450026,2450418,2451893	
chr13	2451976	2460641	2452643	2460529	-	DEG6	Cre13.g579901.t1.1		2460475,2459730,2459218,2458875,2458417,2458069,2457525,2457042,2456777,2456290,2455747,2455381,2454928,2454350,2453829,2453249,2451976	2460641,2460147,2459336,2458950,2458502,2458090,2457628,2457119,2456798,2456429,2455908,2455428,2455027,2454477,2453897,2453356,2452952	serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to Arabidopsis DegP9 and to DegP2
chr13	2460769	2466603	2460943	2466008	+	Cre13.g579950.t1.2	Cre13.g579950.t1.2		2460769,2461659,2462366,2462959,2463263,2464427,2465054,2465849	2461036,2461752,2462490,2463060,2463382,2464551,2465156,2466603	
chr13	2466632	2468091	2466875	2467098	-	Cre13.g579976.t1.1	Cre13.g579976.t1.1		2467722,2466632	2468091,2467511	
chr13	2468273	2469980	2468576	2469540	+	Cre13.g580000.t1.1	Cre13.g580000.t1.1		2468273,2468556,2468808,2469058,2469330	2468362,2468608,2468900,2469199,2469980	
chr13	2468273	2470323	2468576	2469540	+	Cre13.g580000.t2.1	Cre13.g580000.t2.1		2468273,2468556,2468808,2469058,2469330	2468362,2468608,2468900,2469199,2470323	
chr13	2469986	2477724	2470101	2477587	-	Cre13.g580050.t1.2	Cre13.g580050.t1.2		2477545,2477387,2476947,2476172,2474663,2474268,2474054,2473383,2473054,2472531,2471692,2471220,2470401,2469986	2477724,2477479,2477030,2476243,2474742,2474307,2474071,2473506,2473115,2472665,2472197,2471325,2470928,2470101	
chr13	2470326	2477724	2470781	2477587	-	Cre13.g580050.t2.1	Cre13.g580050.t2.1		2477545,2477387,2476947,2476172,2474663,2474268,2474054,2473383,2473054,2472531,2471692,2471220,2470326	2477724,2477479,2477030,2476243,2474742,2474307,2474071,2473506,2473115,2472665,2472197,2471325,2470928	
chr13	2478782	2481444	2479252	2479594	+	Cre13.g580100.t1.2	Cre13.g580100.t1.2		2478782,2479428	2479278,2481444	
chr13	2490822	2498253	2491728	2497799	+	Cre13.g580150.t1.1	Cre13.g580150.t1.1		2490822,2491272,2492544,2493016,2493612,2494033,2494406,2495245,2495695,2496252,2496598,2497058,2497708	2491094,2492020,2492688,2493157,2493670,2494102,2494574,2495393,2495830,2496334,2496729,2497197,2498253	
chr13	2490822	2498253	2491728	2497202	+	Cre13.g580150.t2.1	Cre13.g580150.t2.1		2490822,2491272,2492544,2493016,2493612,2494033,2494406,2495245,2495695,2496252,2496598,2497058	2491094,2492020,2492688,2493157,2493670,2494102,2494574,2495393,2495830,2496334,2496729,2498253	
chr13	2498352	2500153	2498378	2499026	+	Cre13.g580200.t1.2	Cre13.g580200.t1.2		2498352,2498923	2498671,2500153	
chr13	2500156	2505871	2500364	2505811	-	Cre13.g580250.t1.1	Cre13.g580250.t1.1		2505622,2503283,2502716,2502358,2501721,2501070,2500816,2500156	2505871,2505547,2503064,2502562,2502211,2501512,2500892,2500623	
chr13	2500156	2505871	2500364	2505811	-	Cre13.g580250.t2.1	Cre13.g580250.t2.1		2505622,2503283,2502716,2502358,2501721,2501070,2500816,2500156	2505871,2505547,2503064,2502526,2502211,2501512,2500892,2500623	
chr13	2505919	2508667	2506514	2508558	-	CGLD4	Cre13.g580300.t1.2		2508303,2508032,2507566,2507173,2505919	2508667,2508118,2507736,2507247,2506859	
chr13	2508762	2509902	2508831	2509500	+	Cre13.g580350.t1.2	Cre13.g580350.t1.2		2508762,2509015,2509152	2508917,2509075,2509902	
chr13	2515356	2522371	2517684	2522130	-	Cre13.g580450.t1.1	Cre13.g580450.t1.1		2521853,2521145,2520662,2518901,2518245,2515356	2522371,2521284,2520882,2520482,2518712,2517963	
chr13	2522931	2526221	2523374	2525941	-	Cre13.g580500.t1.1	Cre13.g580500.t1.1		2525931,2525763,2525555,2525408,2525020,2524407,2523817,2522931	2526221,2525830,2525621,2525460,2525114,2524525,2523878,2523617	
chr13	2522931	2526221	2523603	2525941	-	Cre13.g580500.t2.1	Cre13.g580500.t2.1		2525931,2525763,2525555,2525408,2525020,2524407,2522931	2526221,2525830,2525621,2525460,2525114,2524525,2523617	
chr13	2526930	2532085	2527282	2531801	-	Cre13.g580550.t1.2	Cre13.g580550.t1.2		2531770,2531323,2530530,2530158,2529691,2529137,2528536,2528014,2526930	2532085,2531547,2530816,2530234,2529805,2529241,2528702,2528143,2527600	Protein contains an interrupted SET domain with very weak similarity to Arabidopsis thaliana ASHR2, SET39, SDG39 (At2g1964), Zea mays SDG13, and Oryza sativa SDG716.  ChromoDB SDG347
chr13	2532196	2539757	2532289	2538900	+	ATE1	Cre13.g580600.t1.2		2532196,2532542,2533565,2533989,2536055,2536769,2537173,2537754,2538048,2538783	2532440,2532588,2533688,2535849,2536215,2536884,2537360,2537802,2538422,2539757	transfers an Arginyl moiety to the N-terminus or side-chain of target proteins
chr13	2539768	2545375	2540315	2544964	-	Cre13.g580650.t1.2	Cre13.g580650.t1.2		2544361,2543865,2542980,2542177,2541570,2541198,2540824,2539768	2545375,2544040,2543505,2542241,2541705,2541248,2540895,2540414	PTPA; helps activate phospholipase 2A
chr13	2545496	2552017	2545668	2551560	+	DAL2	Cre13.g580700.t1.1		2545496,2545897,2546293,2546656,2547187,2547582,2548113,2548397,2548919,2549384,2549776,2550505,2550945,2551335	2545747,2545985,2546361,2546846,2547301,2547713,2548178,2548504,2549011,2549503,2549901,2550648,2551085,2552017	Putative allantoate deiminase/metallopeptidase.  Probable allantoicase-like missing candidate in Sourcebook Vol. 2, p73, Table 3.1
chr13	2552066	2555567	2552152	2555046	+	Cre13.g580750.t1.1	Cre13.g580750.t1.1		2552066,2552642,2553396,2554073,2554622,2554902	2552431,2553181,2553479,2554185,2554733,2555567	
chr13	2555616	2558807	2556033	2558298	+	Cre13.g580800.t1.1	Cre13.g580800.t1.1		2555616,2557033,2557890	2556871,2557706,2558807	
chr13	2558809	2560863	2559841	2560808	-	PRPL22	Cre13.g580850.t2.1		2560712,2560490,2560299,2560062,2558809	2560863,2560630,2560409,2560177,2559905	Putative plastid ribosomal protein L22/L18.  ERY2 locus was mapped to chloroplast ribosomal protein by Bowers et al. (23) [PMID: 1293744]
chr13	2558600	2560863	2559841	2560808	-	PRPL22	Cre13.g580850.t1.2		2560712,2560490,2560299,2560062,2558600	2560863,2560630,2560409,2560177,2559905	Putative plastid ribosomal protein L22/L18.  ERY2 locus was mapped to chloroplast ribosomal protein by Bowers et al. (23) [PMID: 1293744]
chr13	2560956	2566222	2561049	2565650	+	Cre13.g580900.t1.1	Cre13.g580900.t1.1		2560956,2561627,2561987,2562444,2562900,2563260,2563989,2564716,2565171	2561347,2561745,2562235,2562604,2563075,2563420,2564209,2564879,2566222	
chr13	2566426	2572091	2566592	2571311	+	Cre13.g580950.t1.1	Cre13.g580950.t1.1		2566426,2567009,2567282,2568451,2568855,2569185,2569451,2569675,2569849,2570112,2570345,2570590,2570802,2571127	2566753,2567141,2567350,2568545,2569018,2569221,2569520,2569746,2569910,2570160,2570406,2570677,2570878,2572091	
chr13	2572490	2575175	2573076	2574778	-	Cre13.g580976.t1.1	Cre13.g580976.t1.1		2574728,2574427,2573866,2573188,2572490	2575175,2574592,2574230,2573608,2573076	
chr13	2575806	2581151	2576027	2580271	+	Cre13.g581000.t1.1	Cre13.g581000.t1.1		2575806,2576493,2576927,2577340,2577706,2578006,2578205,2578436,2578681,2579017,2579313,2579586,2579806,2580132	2576152,2576625,2576995,2577434,2577869,2578042,2578274,2578507,2578742,2579065,2579374,2579673,2579882,2581151	
chr13	2575806	2581151	2576027	2580363	+	Cre13.g581000.t2.1	Cre13.g581000.t2.1		2575806,2576493,2576927,2577340,2577706,2578006,2578205,2578436,2578681,2579017,2579313,2579586,2579806,2580132,2580363	2576152,2576625,2576995,2577434,2577869,2578042,2578274,2578507,2578742,2579065,2579374,2579673,2579882,2580275,2581151	
chr13	2581576	2587017	2582579	2586563	+	Cre13.g581050.t1.1	Cre13.g581050.t1.1		2581576,2582561,2583038,2583298,2583632,2584001,2584285,2584476,2584732,2585087,2585468,2585788,2586159,2586400	2582073,2582696,2583106,2583392,2583795,2584037,2584354,2584547,2584793,2585135,2585529,2585875,2586235,2587017	
chr13	2581576	2587017	2582579	2586469	+	Cre13.g581050.t2.1	Cre13.g581050.t2.1		2581576,2582561,2583038,2583298,2583632,2584001,2584285,2584476,2584732,2585087,2585468,2585788,2586159,2586400	2582073,2582696,2583106,2583392,2583795,2584037,2584354,2584547,2584793,2585135,2585529,2585875,2586230,2587017	
chr13	2587096	2589981	2587331	2589008	+	Cre13.g581100.t1.2	Cre13.g581100.t1.2		2587096,2587719	2587506,2589981	
chr13	2591400	2594865	2591838	2594652	-	Cre13.g581150.t1.2	Cre13.g581150.t1.2		2594613,2594203,2593898,2593199,2592531,2591400	2594865,2594331,2594016,2593608,2592667,2592132	Related to GCN5
chr13	2594976	2600120	2595081	2598722	+	Cre13.g581200.t1.1	Cre13.g581200.t1.1		2594976,2595504,2596234,2597766,2598116,2598530	2595165,2595996,2596418,2597928,2598288,2600120	
chr13	2607410	2617555	2608472	2617158	-	Cre13.g581300.t1.1	Cre13.g581300.t1.1		2617419,2607410	2617555,2617273	
chr13	2617736	2621487	2617982	2621153	+	Cre13.g581350.t1.2	Cre13.g581350.t1.2		2617736,2619193,2619586,2620546,2620977	2618955,2619416,2620367,2620832,2621487	
chr13	2621490	2628405	2622296	2628194	-	AAA2	Cre13.g581400.t1.1		2628128,2627557,2627357,2626984,2626471,2626135,2625647,2625275,2624943,2624673,2623694,2623365,2623019,2622680,2621490	2628405,2627788,2627409,2627088,2626588,2626251,2625819,2625352,2625000,2624773,2623814,2623497,2623155,2622774,2622536	ADP,ATP carrier protein; belongs to a plant-specific transporter family
chr13	2628621	2633828	2629093	2633732	-	RPN7	Cre13.g581450.t1.2		2633687,2633540,2633133,2632397,2631521,2630909,2630248,2629819,2628621	2633828,2633624,2633424,2632502,2631666,2631038,2630346,2629973,2629193	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN7 (subunit 6) (PSD6)
chr13	2628621	2633815	2629093	2633354	-	RPN7	Cre13.g581450.t2.1		2633687,2633540,2633133,2632397,2631521,2630909,2630248,2629819,2628621	2633815,2633624,2633424,2632502,2631666,2631038,2630346,2629973,2629193	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN7 (subunit 6) (PSD6)
chr13	2633884	2645585	2634867	2645453	-	OPR41	Cre13.g581500.t1.1		2643032,2637139,2636576,2633884	2645585,2642782,2636808,2636403	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr13	2645723	2648438	2646158	2648146	+	THG1	Cre13.g581550.t1.1		2645723,2646475,2646751,2647205,2647468,2647728,2647990	2646262,2646547,2646996,2647249,2647536,2647811,2648438	Adds a terminal guanosine residue at the 5'-end of Histidine tRNAs. Homologue of S. cerevisiae THG1
chr13	2648486	2652096	2648634	2651479	+	ASA4	Cre13.g581600.t1.2		2648486,2648757,2648910,2649205,2649741,2650196,2650512,2650764,2651039,2651314	2648661,2648820,2649109,2649291,2649887,2650273,2650580,2650826,2651116,2652096	Mitochondrial F1F0 ATP synthase associated 31.2 kDa protein; part of peripheral stalk involed in dimerization
chr13	2652406	2654081	2652869	2653359	+	PRPL7	Cre13.g581650.t1.2		2652406	2654081	imported to chloroplast; Chloroplast large ribosomal subunit protein
chr13	2655786	2661167	2656169	2660063	+	Cre13.g581700.t1.1	Cre13.g581700.t1.1		2655786,2656682,2656879,2657104,2657340,2657712,2657951,2658242,2658904,2659271,2659627,2659880	2656490,2656759,2656947,2657170,2657437,2657792,2658005,2658414,2659076,2659343,2659749,2661167	
chr13	2661170	2664105	2661195	2663775	-	Cre13.g581750.t1.2	Cre13.g581750.t1.2		2663614,2661864,2661170	2664105,2663270,2661574	
chr13	2664236	2668247	2664413	2668084	+	Cre13.g581801.t1.1	Cre13.g581801.t1.1		2664236,2664969,2665568,2665964,2666446	2664686,2665068,2665724,2666066,2668247	
chr13	2668349	2677675	2669879	2677530	-	Cre13.g581850.t1.2	Cre13.g581850.t1.2		2677366,2676976,2676450,2675699,2675137,2674510,2674114,2673591,2673096,2672721,2672296,2671868,2671522,2670886,2670413,2668349	2677675,2677114,2676568,2675807,2675262,2674722,2674151,2673771,2673253,2672764,2672474,2671912,2671593,2671068,2670484,2669984	
chr13	2677808	2682860	2677872	2682463	+	Cre13.g581900.t1.1	Cre13.g581900.t1.1		2677808,2679060,2680477,2682025	2678308,2680275,2680717,2682860	
chr13	2683213	2688445	2683785	2686046	-	Cre13.g582000.t1.2	Cre13.g582000.t1.2		2688263,2687679,2687269,2686039,2684797,2684446,2684176,2683968,2683213	2688445,2688214,2687599,2686574,2684855,2684507,2684263,2684044,2683840	
chr13	2691090	2693585	2691636	2693194	-	Cre13.g582050.t1.2	Cre13.g582050.t1.2		2693089,2692739,2691791,2691090	2693585,2692833,2692435,2691636	
chr13	2694096	2695107	2694476	2694825	+	Cre13.g582100.t1.2	Cre13.g582100.t1.2		2694096	2695107	
chr13	2695156	2696917	2695327	2696119	+	Cre13.g582112.t1.2	Cre13.g582112.t1.2		2695156,2696119	2695854,2696917	
chr13	2697616	2700707	2697791	2700333	+	Cre13.g582150.t1.2	Cre13.g582150.t1.2		2697616,2699199,2700012	2698874,2699699,2700707	
chr13	2700710	2704305	2701115	2704138	-	Cre13.g582201.t1.1	Cre13.g582201.t1.1		2704019,2703698,2703092,2702659,2701992,2701371,2700710	2704305,2703819,2703156,2702859,2702186,2701459,2701218	
chr13	2704451	2713215	2705216	2713079	-	Cre13.g582250.t1.2	Cre13.g582250.t1.2		2712911,2712726,2712055,2711462,2711078,2710558,2710063,2709743,2709265,2708626,2707834,2706905,2705627,2704451	2713215,2712771,2712445,2711611,2711162,2710679,2710174,2709844,2709396,2708766,2708347,2707339,2706678,2705423	
chr13	2713326	2720857	2713426	2720753	+	FFT3	Cre13.g582270.t1.1		2713326,2713680,2714009,2714741,2715706,2717229,2718404,2719168	2713474,2713726,2714449,2714838,2716892,2717921,2718996,2720857	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase
chr13	2715916	2721558	2716022	2721193	+	FFT3	Cre13.g582270.t2.1		2715916,2717374,2718404,2719168,2721193	2716680,2717921,2718996,2720848,2721558	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase
chr13	2716626	2720857	2716724	2720753	+	FFT3	Cre13.g582270.t3.1		2716626,2717229,2718404,2719168	2716892,2717921,2718996,2720857	Catalyzes fructosyl transfer between fructan molecules to elongate the fructan chain.  Similar to proteins of the glycoside hydrolase family 32, in particular the vacuolar acid invertase
chr13	2722866	2724127	2722925	2723538	+	Cre13.g582290.t1.1	Cre13.g582290.t1.1		2722866,2723486	2723299,2724127	
chr13	2725080	2731133	2725797	2731039	-	Cre13.g582350.t1.1	Cre13.g582350.t1.1		2730904,2730380,2729920,2729490,2729213,2728777,2728299,2727886,2727062,2726881,2726611,2726201,2725080	2731133,2730432,2730121,2729620,2729264,2728833,2728427,2727957,2727211,2726921,2726704,2726335,2726046	
chr13	2731244	2736165	2731485	2735825	+	Cre13.g582476.t1.1	Cre13.g582476.t1.1		2731244,2731968,2732659,2733327,2733564,2734272,2734518,2735092,2735648	2731751,2732427,2732936,2733402,2734019,2734321,2734830,2735268,2736165	
chr13	2739814	2743230	2740053	2742319	+	Cre13.g582600.t1.2	Cre13.g582600.t1.2		2739814,2740566,2740755,2741034,2741396	2740275,2740622,2740819,2741158,2743230	
chr13	2743724	2746023	2744652	2745968	+	MAPK1	Cre13.g582650.t1.1		2743724,2744257,2745214,2745748	2743950,2744784,2745311,2746023	Mitogen-activated protein kinase 1 (gi:3213552); Long Flagella 4 (MOK homolog).  Characterized by Berman et al. 23 [PMID: 1284215].  Previously annotated as LF4 or  Long Flagella 4
chr13	2759379	2761435	2759436	2760520	+	Cre13.g582671.t1.1	Cre13.g582671.t1.1		2759379,2759638	2759445,2761435	
chr13	2761914	2762926	2762293	2762555	+	Cre13.g582692.t1.1	Cre13.g582692.t1.1		2761914	2762926	
chr13	2762974	2764715	2763115	2763398	+	Cre13.g582713.t1.1	Cre13.g582713.t1.1		2762974	2764715	
chr13	2764723	2768573	2766952	2768534	-	Cre13.g582734.t1.1	Cre13.g582734.t1.1		2768501,2764723	2768573,2768425	
chr13	2768693	2772563	2768796	2771781	-	Cre13.g582755.t1.1	Cre13.g582755.t1.1		2771567,2770505,2770236,2769592,2768693	2772563,2770537,2770286,2769976,2769430	
chr13	2768693	2772473	2768796	2771760	-	Cre13.g582755.t2.1	Cre13.g582755.t2.1		2771567,2770505,2770236,2769592,2768693	2772473,2770537,2770286,2769976,2769430	
chr13	2782627	2791133	2783701	2790866	-	Cre13.g582800.t1.2	Cre13.g582800.t1.2		2790605,2790423,2790172,2789470,2788983,2788447,2788003,2787375,2786973,2786536,2785748,2785252,2784508,2782627	2791133,2790494,2790336,2789633,2789076,2788512,2788083,2787431,2787109,2786659,2785933,2785417,2784626,2783887	
chr13	2791498	2795783	2792571	2795639	-	Cre13.g582850.t1.1	Cre13.g582850.t1.1		2795576,2795375,2795129,2791498	2795783,2795439,2795163,2795027	
chr13	2795872	2799133	2796823	2799089	-	Cre13.g582900.t1.1	Cre13.g582900.t1.1		2799041,2798857,2798224,2797409,2795872	2799133,2798912,2798736,2797557,2797296	
chr13	2799234	2800681	2800019	2800608	+	Cre13.g582950.t1.2	Cre13.g582950.t1.2		2799234,2800016	2799787,2800681	
chr13	2800688	2805292	2800961	2805216	-	Cre13.g583000.t1.1	Cre13.g583000.t1.1		2804776,2804458,2804264,2803787,2801587,2801451,2801282,2800688	2805292,2804704,2804362,2804113,2803686,2801525,2801374,2801153	
chr13	2800688	2805443	2800961	2805216	-	Cre13.g583000.t2.1	Cre13.g583000.t2.1		2804776,2804458,2804264,2803787,2801587,2801451,2801282,2800688	2805443,2804704,2804362,2804113,2803686,2801525,2801374,2801153	
chr13	2805604	2812223	2805780	2810899	+	Cre13.g583050.t1.1	Cre13.g583050.t1.1		2805604,2806165,2806701,2807083,2807550,2808248,2808423,2809047,2809555,2809859,2810542	2805797,2806491,2806855,2807249,2807894,2808300,2808753,2809204,2809630,2810218,2812223	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr13	2812397	2830693	2814006	2830565	-	Cre13.g583100.t1.1	Cre13.g583100.t1.1		2830529,2830384,2830236,2829879,2829711,2829487,2829151,2828758,2828342,2827716,2827026,2814731,2814389,2812397	2830693,2830461,2830305,2829922,2829794,2829573,2829330,2828902,2828611,2828154,2827557,2826894,2814551,2814129	
chr13	2832864	2836079	2833094	2835479	+	Cre13.g583150.t1.1	Cre13.g583150.t1.1		2832864,2833304	2833142,2836079	
chr13	2836184	2837535	2836260	2837387	+	Cre13.g583200.t1.2	Cre13.g583200.t1.2		2836184,2836617,2837260	2836366,2837049,2837535	Putative ribosomal-protein-alanine acetyltransferase
chr13	2837584	2840019	2837881	2839595	+	Cre13.g583217.t1.1	Cre13.g583217.t1.1		2837584,2838521,2839051,2839501	2838250,2838777,2839119,2840019	
chr13	2840074	2852139	2840175	2850993	+	Cre13.g583250.t1.1	Cre13.g583250.t1.1		2840074,2840344,2840977,2841881,2842336,2843214,2843832,2844342,2844730,2845213,2845607,2846094,2846459,2846726,2847119,2847683,2848631,2848994,2849758,2850405,2850938	2840253,2840432,2841125,2842002,2842770,2843321,2843944,2844418,2844858,2845323,2845722,2846267,2846505,2846777,2847236,2847852,2848687,2849032,2849883,2850484,2852139	
chr13	2852194	2853705	2852227	2852965	+	IQA3	Cre13.g583287.t1.2		2852194,2852407,2852965	2852278,2852692,2853705	contains an endekapeptide repeat in the form RADAEIQAVRL and a basic C-terminal tripeptide
chr13	2853938	2857323	2855349	2857137	-	Cre13.g583300.t1.2	Cre13.g583300.t1.2		2856977,2856400,2853938	2857323,2856697,2856118	
chr13	2857378	2861413	2858093	2860895	-	Cre13.g583325.t1.1	Cre13.g583325.t1.1		2861031,2860814,2860371,2859876,2858410,2857378	2861413,2860911,2860558,2859975,2859582,2858105	
chr13	2862834	2869442	2863149	2868712	+	Cre13.g583350.t1.1	Cre13.g583350.t1.1		2862834,2863439,2863964	2863203,2863748,2869442	
chr13	2869514	2876848	2870232	2876179	+	OPR57	Cre13.g583400.t1.1		2869514,2869957,2870095,2872169,2872627	2869830,2869993,2871819,2872447,2876848	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 55 codons at 5'-end: MFGGGSAQTAAWPRGLPVASSRSDALARAHPAAPVRPAPSLTSTQLHEPLGFGAG
chr13	2878238	2881535	2878401	2880746	+	EZY17	Cre13.g583450.t1.2		2878238,2878772,2879047,2879494,2879924,2880669	2878537,2878830,2879220,2879650,2880046,2881535	EZY17k/ClassVIII/PLAC8, cysteine-rich [PMID: 1848763], possible zinc exporter
chr13	2881581	2898833	2882141	2898747	-	Cre13.g583500.t1.1	Cre13.g583500.t1.1		2898664,2898343,2897917,2897241,2896316,2895728,2895384,2894974,2894460,2893983,2893751,2891208,2890440,2889931,2889527,2888944,2888232,2887817,2887402,2886916,2886275,2885578,2885260,2884723,2884073,2881581	2898833,2898593,2898134,2897390,2896972,2895862,2895446,2895086,2894555,2894184,2893849,2891353,2890611,2890059,2889624,2889058,2888400,2887923,2887504,2887054,2886343,2886049,2885422,2885056,2884468,2883930	Homologous to TAF2 TBP-associated factor. ts lethal mutations isolated (PMID 25336509)
chr13	2899024	2902833	2899981	2902768	-	VIPP1	Cre13.g583550.t1.2		2902698,2902484,2902324,2902158,2901836,2901084,2900641,2899024	2902833,2902579,2902415,2902214,2901925,2901248,2900797,2900121	Initially thought involved in vesicle formation/transport in the chloroplast, since VIPP1-underexpressing Arabidopsis mutants were abolished in vesicle budding from the inner membrane and had distorted thylakoids; VIPP1 in Chlamy is located to stroma, thylakoids, and low density membranes; it forms ring-like oligomers, which also assemble into rod-like structures; these are disassembled by the HSP70B-CDJ2-CGE1 chaperones; VIPP1 is overexpressed in Alb3.2 mutants [PMID: 15635096, 16679460]
chr13	2902974	2909924	2903083	2908394	+	DGD1	Cre13.g583600.t1.2		2902974,2904846,2905265,2905628,2906016,2906282,2906629,2907025,2907264,2907611,2908071	2904487,2904939,2905355,2905747,2906139,2906356,2906739,2907114,2907400,2907846,2909924	ts-lethal mutant was isolated (PMID 29743196)
chr13	2911334	2920122	2912564	2919117	+	Cre13.g583650.t1.1	Cre13.g583650.t1.1		2911334,2912506,2913859,2918881	2911714,2913734,2918773,2920122	
chr13	2920330	2926533	2921278	2926339	-	Cre13.g583700.t1.1	Cre13.g583700.t1.1		2925886,2922117,2921725,2920330	2926533,2925709,2921777,2921397	
chr13	2927564	2934358	2927923	2934302	+	Cre13.g583750.t1.1	Cre13.g583750.t1.1		2927564,2928338,2928870,2929223,2929784,2930305,2930616,2930836,2931378,2931751,2932172,2932461,2932793,2933051,2933326,2933733	2928051,2928602,2929002,2929368,2930013,2930447,2930705,2931146,2931491,2931926,2932322,2932610,2932881,2933165,2933467,2934358	
chr13	2938204	2940735	2938995	2939783	+	Cre13.g583787.t1.1	Cre13.g583787.t1.1		2938204,2939369,2939727	2939107,2939473,2940735	
chr13	2945644	2947600	2945758	2945939	+	Cre13.g583824.t1.1	Cre13.g583824.t1.1		2945644	2947600	
chr13	2947845	2954533	2950664	2954412	-	Cre13.g583861.t1.1	Cre13.g583861.t1.1		2952536,2950993,2947845	2954533,2952338,2950688	
chr13	2954724	2959418	2954967	2958186	+	Cre13.g583898.t1.1	Cre13.g583898.t1.1		2954724,2955146,2956882,2957258,2957513,2957689,2957969	2954995,2956767,2957159,2957435,2957626,2957882,2959418	
chr13	2959428	2963747	2960598	2963532	-	Cre13.g583935.t1.1	Cre13.g583935.t1.1		2963394,2963081,2962253,2962099,2961881,2961635,2961304,2961130,2959428	2963747,2963314,2962863,2962135,2962037,2961801,2961463,2961180,2960981	
chr13	2959428	2963747	2960598	2963532	-	Cre13.g583935.t2.1	Cre13.g583935.t2.1		2963394,2963081,2962318,2961881,2961635,2961304,2961130,2959428	2963747,2963314,2962863,2962037,2961801,2961463,2961180,2960981	
chr13	2964586	2969755	2964801	2968467	+	Cre13.g583972.t1.1	Cre13.g583972.t1.1		2964586,2965088,2965458,2966660,2967420,2968051,2968295	2965000,2965254,2966467,2967241,2967573,2968172,2969755	
chr13	2973128	2974603	2973508	2974441	-	CSB54	Cre13.g584050.t1.2		2973994,2973747,2973128	2974603,2973857,2973631	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr13	2975154	2984193	2977171	2984021	-	Cre13.g584100.t1.1	Cre13.g584100.t1.1		2983754,2983267,2982666,2982002,2981638,2980444,2979413,2979030,2978380,2977942,2977776,2977536,2975154	2984193,2983566,2983010,2982423,2981854,2981354,2979827,2979182,2978597,2978087,2977788,2977655,2977319	
chr13	2984354	2987892	2984826	2987763	+	Cre13.g584135.t1.1	Cre13.g584135.t1.1		2984354,2987763	2985747,2987892	
chr13	2987944	2989345	2987993	2988393	+	Cre13.g584170.t1.2	Cre13.g584170.t1.2		2987944	2989345	
chr13	2991064	2999852	2992100	2998911	+	Cre13.g584200.t1.2	Cre13.g584200.t1.2		2991064,2992068,2992497,2992770,2993113,2993485,2993770,2994075,2994325,2994624,2994914,2995357,2995709,2995922,2996256,2996455,2996885,2997518,2997927,2998244,2998473,2998772	2991800,2992225,2992572,2992847,2993270,2993581,2993850,2994201,2994481,2994717,2995080,2995540,2995762,2996102,2996319,2996676,2997283,2997664,2998038,2998297,2998579,2999852	
chr13	2999888	3004123	3001185	3004018	-	Cre13.g584250.t1.2	Cre13.g584250.t1.2		3003980,3003811,3003671,3003455,3003066,3002214,3001510,2999888	3004123,3003909,3003728,3003547,3003182,3002444,3001614,3001311	
chr13	3009990	3014125	3010086	3014090	-	Cre13.g584350.t1.1	Cre13.g584350.t1.1		3014030,3009990	3014125,3013830	
chr13	3018142	3023835	3018792	3023580	-	FAP189	Cre13.g584400.t1.2		3023496,3023249,3021813,3021144,3020649,3019829,3019430,3019210,3018142	3023835,3023336,3022834,3021332,3020921,3020257,3019609,3019296,3019047	Conserved uncharacterized coiled-coil Flagellar Associated Protein; found in the flagellar proteome
chr13	3024441	3060235	3025175	3060091	-	Cre13.g584450.t1.1	Cre13.g584450.t1.1		3060081,3059484,3059075,3058395,3058051,3057832,3057508,3057183,3056404,3056110,3055834,3055530,3054416,3054122,3053833,3053529,3052415,3052121,3051832,3051528,3049073,3048870,3048669,3048402,3047989,3046374,3046057,3042981,3042546,3033718,3033447,3033144,3032983,3032492,3032244,3029734,3029366,3028989,3028577,3028196,3024441	3060235,3059969,3059177,3058761,3058118,3057871,3057594,3057314,3057004,3056252,3056011,3055735,3055406,3054264,3054010,3053734,3053405,3052263,3052009,3051733,3051406,3048941,3048699,3048519,3048268,3047285,3046121,3045916,3042871,3042406,3033584,3033271,3033024,3032857,3032359,3032078,3029568,3029174,3028841,3028455,3028073	
chr13	3024441	3060235	3025175	3060091	-	Cre13.g584450.t2.1	Cre13.g584450.t2.1		3060081,3059484,3059075,3058395,3058051,3057832,3057508,3057183,3056404,3056110,3055834,3055530,3054416,3054122,3053833,3053529,3052415,3052121,3051832,3051528,3049073,3048870,3048669,3048402,3047989,3046057,3042981,3042546,3033718,3033447,3033144,3032983,3032492,3032244,3029734,3029366,3028989,3028577,3028196,3024441	3060235,3059969,3059177,3058761,3058118,3057871,3057594,3057314,3057004,3056252,3056011,3055735,3055406,3054264,3054010,3053734,3053405,3052263,3052009,3051733,3051406,3048941,3048699,3048519,3048268,3046121,3045916,3042871,3042406,3033584,3033271,3033024,3032857,3032359,3032078,3029568,3029174,3028841,3028455,3028073	
chr13	3060346	3061620	3060462	3061332	+	Cre13.g584500.t1.2	Cre13.g584500.t1.2		3060346,3060736	3060613,3061620	
chr13	3062419	3066405	3062826	3066202	-	Cre13.g584551.t1.1	Cre13.g584551.t1.1		3066195,3065954,3063772,3063329,3062419	3066405,3066126,3065816,3063652,3063082	
chr13	3066500	3070925	3067430	3070691	-	Cre13.g584600.t1.1	Cre13.g584600.t1.1		3070669,3070427,3068415,3067912,3066500	3070925,3070599,3070306,3068235,3067674	
chr13	3070980	3075065	3071488	3074780	-	Cre13.g584619.t1.2	Cre13.g584619.t1.2		3074758,3074508,3072643,3072026,3070980	3075065,3074680,3074372,3072397,3071768	
chr13	3077218	3081475	3077924	3081390	-	Cre13.g584650.t1.2	Cre13.g584650.t1.2		3081303,3080934,3080556,3080124,3079800,3079242,3078935,3078517,3077218	3081475,3081170,3080651,3080284,3079917,3079472,3078994,3078617,3078114	
chr13	3081625	3087555	3081758	3087515	-	Cre13.g584700.t1.1	Cre13.g584700.t1.1		3086900,3086405,3085997,3085643,3084667,3084064,3083589,3083206,3082437,3082165,3081625	3087555,3086527,3086076,3085724,3085031,3084341,3083665,3083298,3082945,3082228,3082004	
chr13	3087686	3094897	3087927	3094194	+	Cre13.g584750.t1.1	Cre13.g584750.t1.1		3087686,3088937,3089429,3089838,3090270,3091905,3092265,3092750,3092859,3093266,3093619,3094077	3088748,3089082,3089523,3089952,3090313,3091985,3092342,3092803,3092972,3093331,3093879,3094897	
chr13	3087686	3094897	3087927	3094194	+	Cre13.g584750.t2.1	Cre13.g584750.t2.1		3087686,3088937,3089429,3089838,3090270,3091905,3092265,3092859,3093266,3093619,3094077	3088748,3089082,3089523,3089952,3090313,3091985,3092342,3092972,3093331,3093879,3094897	
chr13	3095018	3098195	3097708	3097991	-	Cre13.g584775.t1.1	Cre13.g584775.t1.1		3095018	3098195	
chr13	3098250	3101635	3098368	3100935	-	Cre13.g584800.t1.2	Cre13.g584800.t1.2		3101381,3099645,3098250	3101635,3101251,3099406	
chr13	3103436	3107925	3104314	3107875	-	Cre13.g584850.t1.1	Cre13.g584850.t1.1		3107724,3107170,3106884,3106579,3106089,3105846,3105442,3104949,3104637,3103436	3107925,3107273,3106946,3106631,3106142,3105913,3105471,3105003,3104716,3104385	
chr13	3108052	3121205	3108963	3120995	-	Cre13.g584901.t1.1	Cre13.g584901.t1.1		3120815,3120316,3119789,3119340,3118614,3118257,3117644,3117117,3116415,3115905,3115367,3114687,3114117,3113618,3113119,3112626,3112061,3110918,3110614,3110148,3109739,3108052	3121205,3120675,3119895,3119411,3118829,3118418,3117758,3117198,3116515,3115960,3115520,3114800,3114224,3113678,3113234,3112775,3112227,3111014,3110685,3110300,3109861,3109143	May contain additional coding sequence in intronic N-island PMID: 27175017
chr13	3121326	3124717	3121465	3123887	+	Cre13.g584950.t1.1	Cre13.g584950.t1.1		3121326,3122233,3122526,3122814,3123695	3121777,3122303,3122613,3123209,3124717	
chr13	3124719	3130345	3125756	3129637	-	Cre13.g585000.t1.2	Cre13.g585000.t1.2		3129900,3129599,3128889,3128557,3127982,3127377,3127057,3126644,3124719	3130345,3129741,3129301,3128697,3128182,3127564,3127129,3126726,3125912	
chr13	3124719	3130345	3125756	3129637	-	Cre13.g585000.t2.1	Cre13.g585000.t2.1		3129900,3129599,3128889,3128557,3127982,3127377,3127057,3126644,3124719	3130345,3129684,3129301,3128697,3128182,3127564,3127129,3126726,3125912	
chr13	3124719	3130345	3125756	3129637	-	Cre13.g585000.t3.1	Cre13.g585000.t3.1		3129900,3129599,3128889,3128557,3127982,3127377,3127057,3126644,3124719	3130345,3129687,3129301,3128697,3128182,3127564,3127129,3126726,3125912	
chr13	3132486	3133595	3132800	3133116	+	Cre13.g585026.t1.1	Cre13.g585026.t1.1		3132486	3133595	
chr13	3133988	3139545	3135145	3139025	-	Cre13.g585050.t1.2	Cre13.g585050.t1.2		3139314,3138984,3138438,3138104,3137537,3137188,3135900,3135622,3133988	3139545,3139080,3138853,3138244,3137740,3137375,3135972,3135704,3135301	
chr13	3133988	3139645	3135145	3139025	-	Cre13.g585050.t2.1	Cre13.g585050.t2.1		3139340,3138984,3138438,3138104,3137537,3137188,3135900,3135622,3133988	3139645,3139080,3138853,3138244,3137740,3137375,3135972,3135704,3135301	
chr13	3139762	3147705	3141278	3147580	-	Cre13.g585100.t1.2	Cre13.g585100.t1.2		3147412,3147047,3146582,3146045,3145418,3144545,3143886,3143457,3142801,3142368,3141577,3139762	3147705,3147094,3146635,3146174,3145573,3144655,3144013,3143558,3142981,3142415,3142036,3141357	
chr13	3147873	3150137	3148117	3148856	+	EIF6	Cre13.g585150.t1.2		3147873	3150137	putative eukaryotic translation initiation factor 6 (eIF-6); found in the flagellar proteome [PMID: 15998802]
chr13	3151136	3153693	3152748	3153537	-	Cre13.g585175.t1.1	Cre13.g585175.t1.1		3153473,3153040,3151136	3153693,3153218,3152775	
chr13	3153948	3155703	3154008	3155183	-	Cre13.g585200.t1.2	Cre13.g585200.t1.2		3155050,3154756,3154397,3153948	3155703,3154907,3154553,3154307	
chr13	3156748	3162322	3157579	3162130	-	Cre13.g585250.t1.1	Cre13.g585250.t1.1		3162076,3161751,3161424,3160762,3160427,3159820,3159464,3158903,3158186,3156748	3162322,3161975,3161483,3160853,3160510,3160109,3159548,3159037,3158282,3157759	
chr13	3162717	3169793	3163914	3169643	-	CPLD55	Cre13.g585301.t1.1		3169367,3169240,3169000,3168384,3167529,3166908,3166309,3165668,3164874,3164323,3162717	3169793,3169303,3169124,3168494,3167633,3166946,3166495,3165843,3165095,3164481,3164100	
chr13	3170204	3174476	3170504	3173958	+	Cre13.g585350.t1.2	Cre13.g585350.t1.2		3170204,3171049,3171708,3172158,3172496,3173853	3170663,3171126,3171789,3172235,3172674,3174476	
chr13	3174544	3185855	3174881	3184830	+	Cre13.g585400.t1.1	Cre13.g585400.t1.1		3174544,3175277,3175825,3176210,3176530,3176915,3178430,3178977,3179553,3180129,3180483,3181754,3182185,3182632,3182999	3175022,3175367,3175882,3176255,3176555,3177019,3178690,3179061,3179656,3180186,3180570,3181818,3182298,3182729,3185855	
chr13	3174544	3185855	3174881	3184830	+	Cre13.g585400.t2.1	Cre13.g585400.t2.1		3174544,3175277,3175825,3176210,3176915,3178430,3178977,3179553,3180129,3180483,3181754,3182185,3182632,3182999	3175022,3175367,3175882,3176275,3177019,3178690,3179061,3179656,3180186,3180570,3181818,3182298,3182729,3185855	
chr13	3186194	3192405	3186871	3190212	+	Cre13.g585450.t1.1	Cre13.g585450.t1.1		3186194,3186644,3186847,3187076,3187864,3188266,3188539,3189099,3189726	3186496,3186744,3186904,3187653,3187954,3188322,3188694,3189545,3192405	
chr13	3192413	3197293	3193465	3197143	-	Cre13.g585500.t1.2	Cre13.g585500.t1.2		3197020,3196862,3196640,3196259,3195481,3195064,3194648,3194311,3193925,3192413	3197293,3196915,3196712,3196424,3195640,3195223,3194823,3194342,3194079,3193662	contains a PAP2/haloperoxidase domain found in vanadium chloroperoxidases and related to phosphoesterases; closely related to upstream divergent HAP2 gene, and to more distantly linked HAP3 and HAP4; highly induced by sulfur starvation in WT, but not in sac1 mutants (PMID: 15470261)
chr13	3197436	3202259	3197611	3201620	+	Cre13.g585550.t1.1	Cre13.g585550.t1.1		3197436,3197977,3198418,3198844,3199201,3199554,3199757,3200184,3200687,3201168,3201518	3197722,3198124,3198524,3198950,3199324,3199597,3199869,3200350,3200885,3201262,3202259	contains a PAP2/haloperoxidase domain found in vanadium chloroperoxidases and related to phosphoesterases; closely related to upstream divergent HAP1 gene, and to more distantly linked HAP3 and HAP4
chr13	3202600	3210153	3204063	3209614	-	Cre13.g585600.t1.1	Cre13.g585600.t1.1		3209894,3209502,3208021,3205362,3204746,3204469,3202600	3210153,3209624,3208609,3207657,3205123,3204521,3204187	
chr13	3210304	3215669	3210423	3215487	+	Cre13.g585651.t1.1	Cre13.g585651.t1.1		3210304,3210949,3211282,3212036,3212376,3213017,3215298	3210616,3211068,3211362,3212184,3212485,3213224,3215669	
chr13	3216012	3229463	3216416	3229418	-	Cre13.g585700.t1.1	Cre13.g585700.t1.1		3227875,3226796,3226402,3225474,3224635,3224139,3223659,3222075,3221492,3221079,3220762,3220106,3219671,3218528,3216012	3229463,3227174,3226478,3226131,3224770,3224258,3223763,3222188,3221839,3221147,3220872,3220451,3219862,3219462,3216686	
chr13	3229864	3239255	3229940	3238902	+	Cre13.g585750.t1.2	Cre13.g585750.t1.2		3229864,3230903,3231105,3231429,3232065,3232586,3232879,3233183,3233656,3234040,3234476,3235200,3235655,3235973,3236332,3236786,3237162,3237426,3238839	3230330,3230944,3231236,3231594,3232177,3232660,3232944,3233310,3233782,3234181,3234597,3235232,3235748,3236042,3236401,3236894,3237268,3237479,3239255	FAD-dependent oxidoreductase, containing Rieske [2Fe-2S] iron-sulfur domain; possible sarcosine oxidase
chr13	3239290	3246533	3239953	3246296	-	SUB2	Cre13.g585800.t1.2		3246289,3245964,3245292,3244468,3244216,3243825,3243550,3242920,3242525,3241869,3241475,3241121,3240864,3240302,3239290	3246533,3246049,3245658,3244763,3244260,3243931,3243684,3243067,3242707,3242195,3241650,3241184,3240980,3240529,3240097	contains a protease S8 (subtilisine, kexin) domain; most similar to secreted bacterial proteases
chr13	3246583	3248683	3246984	3248601	-	Cre13.g585850.t1.2	Cre13.g585850.t1.2		3248536,3248313,3247930,3247633,3247358,3246583	3248683,3248459,3247997,3247715,3247396,3247116	N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase
chr13	3248818	3258695	3249046	3257936	+	LKHA4	Cre13.g585900.t1.2		3248818,3249450,3250118,3250673,3251074,3251693,3252267,3252844,3253483,3253973,3254481,3254924,3255423,3255616,3255886,3256266,3256808,3257385,3257803	3249085,3249521,3250297,3250792,3251166,3251792,3252334,3252991,3253612,3254067,3254557,3255039,3255459,3255735,3255981,3256317,3256982,3257483,3258695	Related to Leukotriene A-4 hydrolase (LTA-4 hydrolase) (Leukotriene A(4 hydrolase)
chr13	3258764	3262885	3258858	3262480	+	Cre13.g585950.t1.2	Cre13.g585950.t1.2		3258764,3260198,3260524	3259900,3260388,3262885	
chr13	3262888	3269353	3263558	3269105	-	Cre13.g586000.t1.2	Cre13.g586000.t1.2		3269031,3268521,3267778,3265510,3265029,3264544,3264051,3262888	3269353,3268770,3268037,3265591,3265194,3264647,3264332,3263660	May contain additional coding sequence in intronic N-island PMID: 27175017
chr13	3269454	3277475	3269632	3276946	+	Cre13.g586050.t1.1	Cre13.g586050.t1.1		3269454,3270248,3270620,3271064,3271666,3272216,3272639,3273146,3273456,3273671,3274311,3274804,3275330,3275847,3276318,3276805	3269887,3270424,3270709,3271219,3271754,3272340,3272757,3273244,3273497,3273852,3274418,3274898,3275540,3276084,3276542,3277475	
chr13	3277534	3282019	3277744	3281496	+	Cre13.g586100.t1.1	Cre13.g586100.t1.1		3277534,3280579,3280929,3281496	3280314,3280697,3281150,3282019	
chr13	3282211	3285533	3282810	3285504	-	Cre13.g586150.t1.1	Cre13.g586150.t1.1		3285086,3284755,3282211	3285533,3284945,3284478	
chr13	3285937	3289693	3286435	3289585	-	Cre13.g586200.t1.2	Cre13.g586200.t1.2		3289367,3288999,3288464,3287686,3287141,3286844,3285937	3289693,3289118,3288739,3287971,3287360,3286943,3286568	
chr13	3289804	3292625	3290224	3292335	+	COA7	Cre13.g586250.t1.2		3289804,3290223,3290475,3290858,3291273,3291716,3292209	3290105,3290290,3290556,3290901,3291344,3291901,3292625	Catalyzes the final step (of five) of pantothenate biosynthesis from CoA.  Similary to COA6
chr13	3292675	3294438	3292751	3293839	+	FKBP12	Cre13.g586300.t1.2		3292675,3293044,3293426,3293755	3292788,3293180,3293494,3294438	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (Immunophilin); probably cytosolic (by homology to FKB1_HUMAN and AtFBKP12); mutant is rapamycin resistant; involved in signaling nutrient status, in conjunction with the TOR (target of Rapamycin) protein kinase [PMID: 15270681] and FIP37 [PMID: 15047892]; found in the flagellar proteome, as FAP229 [PMID: 15998802]
chr13	3294586	3302573	3295222	3302447	-	Cre13.g586350.t1.1	Cre13.g586350.t1.1		3302315,3301677,3301333,3300988,3300647,3300163,3299846,3299451,3299144,3298437,3298011,3297552,3297091,3296364,3295764,3294586	3302573,3302091,3301510,3301129,3300722,3300370,3299949,3299509,3299333,3298650,3298141,3297660,3297183,3296481,3295854,3295377	
chr13	3302704	3308155	3303017	3307235	+	Cre13.g586400.t1.2	Cre13.g586400.t1.2		3302704,3303289,3303686,3304086,3304294,3304548,3304906,3305239,3305535,3305794,3306202,3306479,3306989	3303158,3303360,3303733,3304130,3304363,3304636,3305022,3305324,3305545,3305906,3306258,3306739,3308155	
chr13	3310591	3313482	3311275	3312843	+	Cre13.g586450.t2.1	Cre13.g586450.t2.1		3310591,3311655,3312062,3312378,3312680	3311521,3311841,3312210,3312493,3313482	Related to GCN5
chr13	3310441	3313482	3311275	3312843	+	Cre13.g586450.t1.2	Cre13.g586450.t1.2		3310441,3311275,3311655,3312062,3312378,3312680	3311116,3311521,3311841,3312210,3312493,3313482	Related to GCN5
chr13	3313485	3320940	3314365	3320609	-	KIN17-2	Cre13.g586500.t1.2		3320304,3319960,3319533,3319265,3318805,3318181,3317753,3317484,3317176,3313485	3320940,3320054,3319627,3319341,3318938,3318330,3317940,3317536,3317293,3316756	kinesin-17 family, novel kinesin family (PMID: 16481395)
chr13	3320995	3322420	3321414	3322314	-	CYB4	Cre13.g586550.t1.2		3322084,3320995	3322420,3321601	
chr13	3322531	3326122	3322802	3325425	+	Cre13.g586600.t1.2	Cre13.g586600.t1.2		3322531,3322751,3323017,3323304,3323741,3324082,3324373,3324698,3325037,3325257	3322574,3322912,3323043,3323400,3323820,3324201,3324427,3324872,3325125,3326122	
chr13	3326171	3342067	3326248	3340957	+	FXL1	Cre13.g586650.t1.1		3326171,3326825,3327037,3327293,3327500,3327744,3328195,3328408,3328661,3328938,3329250,3329599,3329889,3330072,3330319,3330551,3330851,3331095,3331597,3331933,3332251,3332632,3332947,3333275,3333587,3333888,3335112,3335625,3335952,3336135,3336408,3336633,3336874,3337094,3337417,3337799,3338386,3338679,3338944,3339268,3339526,3339895,3340079,3340696	3326373,3326895,3327113,3327307,3327614,3327916,3328254,3328432,3328744,3329077,3329438,3329751,3329978,3330218,3330413,3330700,3331013,3331426,3331729,3332110,3332462,3332778,3333117,3333475,3333783,3334945,3335322,3335780,3335962,3336215,3336441,3336721,3336945,3337180,3337583,3338224,3338505,3338738,3339045,3339375,3339663,3339921,3340270,3342067	one in a large family of PAS domain containing proteins, possibly involved in signal sensing
chr13	3342134	3356930	3343205	3356063	-	Cre13.g586700.t1.1	Cre13.g586700.t1.1		3356602,3356256,3356063,3355948,3355593,3355365,3355126,3354900,3354632,3354300,3353900,3353588,3353375,3353076,3352858,3352560,3352225,3351727,3351465,3351091,3350704,3350398,3350088,3349494,3348281,3347895,3347644,3347356,3347141,3346766,3346442,3346116,3345571,3345266,3345074,3344792,3344430,3344200,3344006,3343629,3342134	3356930,3356323,3356139,3355950,3355707,3355517,3355145,3354984,3354715,3354439,3354088,3353740,3353464,3353222,3352952,3352709,3352387,3352058,3351597,3351268,3350915,3350547,3350258,3349906,3349389,3348105,3347701,3347484,3347198,3346961,3346527,3346282,3345984,3345391,3345133,3344893,3344537,3344337,3344032,3343820,3343463	
chr13	3342134	3356930	3343205	3356063	-	Cre13.g586700.t2.1	Cre13.g586700.t2.1		3356256,3356063,3355948,3355593,3355365,3355126,3354900,3354632,3354300,3353900,3353588,3353375,3353076,3352858,3352560,3352225,3351727,3351465,3351091,3350704,3350398,3350088,3349494,3348281,3347895,3347644,3347356,3347141,3346766,3346442,3346116,3345571,3345266,3345074,3344792,3344430,3344200,3344006,3343629,3342134	3356930,3356139,3355950,3355707,3355517,3355145,3354984,3354715,3354439,3354088,3353740,3353464,3353222,3352952,3352709,3352387,3352058,3351597,3351268,3350915,3350547,3350258,3349906,3349389,3348105,3347701,3347484,3347198,3346961,3346527,3346282,3345984,3345391,3345133,3344893,3344537,3344337,3344032,3343820,3343463	
chr13	3357087	3368250	3358870	3368120	-	Cre13.g586750.t1.2	Cre13.g586750.t1.2		3368055,3367455,3366952,3366646,3366292,3365858,3365050,3364801,3364514,3364004,3363377,3362648,3362248,3360746,3360485,3357087	3368250,3367611,3367034,3366754,3366420,3366136,3365655,3364887,3364648,3364276,3363804,3363171,3362529,3362007,3360615,3360323	
chr13	3357087	3368250	3358870	3368120	-	Cre13.g586750.t2.1	Cre13.g586750.t2.1		3368055,3367455,3366952,3366646,3366292,3365858,3365050,3364801,3364514,3364004,3363377,3362648,3362248,3360746,3360485,3357087	3368250,3367611,3367034,3366754,3366420,3366136,3365655,3364887,3364648,3364276,3363804,3363150,3362529,3362007,3360615,3360323	
chr13	3357087	3368250	3358870	3368120	-	Cre13.g586750.t3.1	Cre13.g586750.t3.1		3368055,3367461,3366952,3366646,3366292,3365858,3365050,3364801,3364514,3364004,3363377,3362648,3362248,3360746,3360485,3357087	3368250,3367611,3367034,3366754,3366420,3366136,3365655,3364887,3364648,3364276,3363804,3363150,3362529,3362007,3360615,3360323	
chr13	3368391	3373403	3368593	3373068	+	Cre13.g586800.t1.1	Cre13.g586800.t1.1		3368391,3368800,3369133,3369440,3369871,3370340,3370727,3371086,3371563,3371855,3372097,3372738	3368665,3368892,3369202,3369537,3370163,3370491,3370911,3371448,3371673,3371914,3372495,3373403	
chr13	3373451	3377696	3373788	3376345	+	Cre13.g586850.t1.1	Cre13.g586850.t1.1		3373451,3373929	3373799,3377696	
chr13	3377860	3378850	3378568	3378758	-	Cre13.g586883.t1.1	Cre13.g586883.t1.1		3377860	3378850	
chr13	3380121	3383538	3380149	3382953	+	SRS6	Cre13.g586916.t1.1		3380121,3380418,3380586,3381640,3381868,3382162,3382391,3382910	3380344,3380456,3380617,3381673,3381936,3382231,3382769,3383538	SC35-like splicing factor, 27 kD (SCL27), nearly identical to SC35-like splicing factor SCL28, 28 kD (Arabidopsis thaliana) GI:9843655; contains Pfam profile PF00076: Contains RNA-binding region RNP-1 (RNA recognition motif; RRM, RBD, or RNP domain)
chr13	3386136	3389150	3387242	3389063	-	Cre13.g586950.t1.2	Cre13.g586950.t1.2		3388811,3388475,3387991,3387589,3386136	3389150,3388661,3388139,3387704,3387414	Related to GCN5
chr13	3389333	3393810	3389716	3393717	-	Cre13.g587000.t1.2	Cre13.g587000.t1.2		3393650,3393492,3393049,3391799,3391387,3390757,3390274,3390009,3389333	3393810,3393579,3393176,3392325,3391511,3391169,3390564,3390100,3389812	
chr13	3393992	3399170	3395078	3399037	-	ERF1	Cre13.g587050.t1.2		3398983,3398825,3398619,3398348,3397775,3397229,3396379,3395966,3395436,3393992	3399170,3398899,3398747,3398520,3397952,3397391,3396498,3396120,3395633,3395150	eukaryotic peptide release factor 1; eRF/aRF subunit (eRF1);gi 18250310 gb AAL17660.1
chr13	3399294	3405432	3399410	3405173	+	PCYA1	Cre13.g587100.t1.2		3399294,3399912,3400838,3401280,3401587,3401916,3402387,3402742,3403029,3403449,3403930,3404165,3404482,3404888,3405113	3399522,3400159,3400912,3401363,3401659,3402045,3402512,3402859,3403143,3403599,3404020,3404267,3404609,3404944,3405432	
chr13	3405481	3409968	3405499	3409395	+	HAT5	Cre13.g587150.t1.1		3405481,3405638,3405777,3405968,3406502,3406891,3407293,3407764,3408088,3408468,3408833,3409227	3405562,3405695,3405845,3406079,3406592,3406968,3407461,3407876,3408210,3408647,3408961,3409968	MYST family histone acetyltransferase, ChromDB HAM342
chr13	3410071	3414082	3410107	3413979	+	PIGW	Cre13.g587200.t1.1		3410071,3410279,3410492,3410892,3411136,3411435,3412132,3412465,3413063,3413431,3413742,3413908	3410213,3410315,3410716,3411004,3411238,3411528,3412282,3412831,3413297,3413514,3413772,3414082	transferring acyl grous
chr13	3414088	3420200	3415617	3420020	-	Cre13.g587250.t1.1	Cre13.g587250.t1.1		3419939,3419525,3418329,3417380,3414088	3420200,3419617,3419289,3418191,3417192	
chr13	3420257	3425000	3421404	3424893	-	Cre13.g587300.t1.1	Cre13.g587300.t1.1		3424734,3424242,3422960,3421931,3420257	3425000,3424325,3424121,3422772,3421743	
chr13	3425085	3429370	3425614	3429282	-	Cre13.g587350.t1.1	Cre13.g587350.t1.1		3429004,3428772,3428441,3428060,3427519,3426964,3426698,3425085	3429370,3428832,3428584,3428187,3427573,3427122,3426782,3426414	
chr13	3425266	3429370	3425614	3429282	-	Cre13.g587350.t2.1	Cre13.g587350.t2.1		3429004,3428772,3428441,3428060,3427519,3426964,3426698,3425266	3429370,3428832,3428584,3428187,3427573,3427122,3426782,3426414	
chr13	3429465	3434310	3430250	3434222	-	Cre13.g587376.t1.1	Cre13.g587376.t1.1		3434156,3433788,3431096,3430744,3429465	3434310,3433844,3433495,3430836,3430574	
chr13	3434517	3437990	3435228	3437801	-	Cre13.g587400.t1.1	Cre13.g587400.t1.1		3437738,3437552,3435576,3434517	3437990,3437615,3437341,3435402	
chr13	3438115	3442180	3438914	3442032	-	Cre13.g587450.t1.2	Cre13.g587450.t1.2		3441912,3441553,3441247,3440885,3440327,3439947,3439649,3439309,3438115	3442180,3441689,3441379,3441017,3440442,3440036,3439776,3439403,3439114	This protein contains a putative 5-Formyltetrahydrofolate cycloligase domain, but has little homology to the biochemically characterized 5-formyltetrahydrofolate cycloligases. Probably organellar protein.
chr13	3442281	3449434	3442491	3448264	+	AOF8	Cre13.g587500.t1.1		3442281,3442582,3443173,3443847,3444013,3444212,3444565,3444891,3445159,3445493,3445765,3446178,3446499,3446855,3447228,3447651,3448031	3442505,3442856,3443310,3443860,3444086,3444290,3444659,3444931,3445247,3445562,3445833,3446273,3446596,3447010,3447363,3447770,3449434	Flavin-containing amine oxidase, possibly an L-amino oxidase and/or carotene 7,8-desaturase (see ZDS1)
chr13	3442281	3449434	3442491	3448264	+	AOF8	Cre13.g587500.t2.1		3442281,3442582,3443173,3443847,3444013,3444212,3444565,3444891,3445159,3445493,3445765,3446178,3446499,3446855,3447228,3447651,3448031	3442505,3442856,3443304,3443860,3444086,3444290,3444659,3444931,3445247,3445562,3445833,3446273,3446596,3447010,3447363,3447770,3449434	Flavin-containing amine oxidase, possibly an L-amino oxidase and/or carotene 7,8-desaturase (see ZDS1)
chr13	3450261	3467492	3450673	3466248	+	Cre13.g587550.t1.1	Cre13.g587550.t1.1		3450261,3451071,3451350,3451831,3452153,3452352,3452632,3452992,3453272,3453539,3453770,3454292,3454605,3454845,3455101,3455409,3455783,3456037,3456333,3456624,3457139,3457498,3457842,3458214,3458537,3458860,3459257,3459630,3461118,3461364,3461616,3461816,3462062,3462421,3462702,3462890,3463180,3463573,3464210,3464539,3464708,3464949,3465177,3465575,3465957	3450798,3451115,3451375,3451907,3452206,3452466,3452804,3453084,3453296,3453622,3453963,3454426,3454669,3454932,3455190,3455555,3455877,3456186,3456495,3456955,3457271,3457675,3458053,3458369,3458707,3459069,3459486,3460982,3461201,3461435,3461634,3461888,3462172,3462469,3462736,3462976,3463346,3464043,3464317,3464598,3464809,3465056,3465400,3465707,3467492	
chr13	3450261	3467492	3450673	3466248	+	Cre13.g587550.t2.1	Cre13.g587550.t2.1		3450261,3451071,3451350,3451831,3452153,3452352,3452632,3452992,3453272,3453539,3453770,3454292,3454605,3454845,3455101,3455409,3455783,3456037,3456333,3456624,3457139,3457498,3457842,3458214,3458537,3458860,3459257,3459630,3461118,3461364,3461616,3461816,3462062,3462421,3462702,3462890,3463180,3463573,3464210,3464539,3464708,3464949,3465177,3465575,3465957	3450798,3451115,3451375,3451907,3452206,3452466,3452804,3453051,3453296,3453622,3453963,3454426,3454669,3454932,3455190,3455555,3455877,3456186,3456495,3456955,3457271,3457675,3458053,3458369,3458707,3459069,3459486,3460982,3461201,3461435,3461634,3461888,3462172,3462469,3462736,3462976,3463346,3464043,3464317,3464598,3464809,3465056,3465400,3465707,3467492	
chr13	3467515	3477160	3468640	3476569	-	Cre13.g587600.t1.2	Cre13.g587600.t1.2		3476525,3476201,3475663,3475236,3474919,3474422,3474087,3473661,3472737,3472285,3471819,3471305,3470961,3470686,3470305,3469878,3469327,3468920,3467515	3477160,3476327,3476029,3475425,3475033,3474664,3474209,3473843,3473343,3472451,3472039,3471495,3471139,3470795,3470440,3470045,3469479,3468979,3468703	
chr13	3477791	3478932	3478188	3478828	+	Cre13.g587650.t1.2	Cre13.g587650.t1.2		3477791	3478932	
chr13	3478981	3484682	3479224	3484188	+	Cre13.g587700.t1.2	Cre13.g587700.t1.2		3478981,3479839,3480134,3480492,3481162,3481465,3481885,3482819,3483152,3483750,3484071	3479383,3479909,3480220,3480562,3481236,3481585,3481947,3482886,3483298,3483826,3484682	Putative retinol dehydrogenase-related
chr13	3484685	3492680	3485389	3492597	-	COG6	Cre13.g587750.t1.2		3492528,3492254,3491886,3491231,3490697,3490198,3489797,3489306,3488811,3488193,3487571,3486193,3485773,3484685	3492680,3492424,3492038,3491293,3490857,3490321,3489943,3489390,3488905,3488423,3487918,3486327,3485883,3485563	Expressed protein. Similar to COG6/COD2, component of oligomeric golgi complex 6, involved in vesicle tethering and other Golgi functions
chr13	3492820	3504935	3493227	3504551	+	Cre13.g587800.t1.1	Cre13.g587800.t1.1		3492820,3493207,3493622,3493906,3495922,3496381,3497432,3498036,3499434,3500042,3500547,3501658,3502229,3502997,3503368	3493081,3493329,3493688,3495589,3496132,3497283,3497662,3499139,3499741,3500326,3501405,3502007,3502574,3503187,3504935	
chr13	3505020	3510351	3505303	3510033	+	Cre13.g587850.t1.1	Cre13.g587850.t1.1		3505020,3505278,3505681,3505891,3506224,3507233,3507784,3508916,3509210,3509462	3505156,3505358,3505755,3506129,3506538,3507427,3508282,3509130,3509292,3510351	
chr13	3505020	3510351	3505303	3510033	+	Cre13.g587850.t2.1	Cre13.g587850.t2.1		3505020,3505278,3505693,3505891,3506224,3507233,3507784,3508916,3509210,3509462	3505156,3505358,3505755,3506129,3506538,3507427,3508282,3509130,3509292,3510351	
chr13	3505020	3510351	3505303	3510033	+	Cre13.g587850.t3.1	Cre13.g587850.t3.1		3505020,3505278,3505693,3505891,3506227,3507233,3507784,3508916,3509210,3509462	3505156,3505358,3505755,3506129,3506538,3507427,3508282,3509130,3509292,3510351	
chr13	3515340	3519871	3515641	3519011	+	Cre13.g587950.t1.1	Cre13.g587950.t1.1		3515340,3518669	3518224,3519871	
chr13	3519980	3530901	3520560	3529918	+	Cre13.g588000.t1.2	Cre13.g588000.t1.2		3519980,3520633,3521473,3521967,3522395,3522788,3522987,3523246,3523791,3524326,3525025,3526534,3527271,3527914,3528320,3528734,3529641	3520574,3521263,3521526,3522079,3522578,3522862,3523072,3523330,3523862,3524480,3525085,3526992,3527402,3528027,3528450,3529423,3530901	
chr13	3530980	3532903	3531232	3531658	+	Cre13.g588026.t1.1	Cre13.g588026.t1.1		3530980,3531468	3531267,3532903	
chr13	3545090	3546601	3545263	3546000	+	Cre13.g588050.t1.2	Cre13.g588050.t1.2		3545090,3545463,3545884	3545368,3545553,3546601	
chr13	3546650	3552479	3547116	3552019	+	CYN19-3	Cre13.g588100.t1.2		3546650,3547651,3548062,3548524,3549023,3549451,3550254,3550650,3551372,3551898	3547209,3547725,3548133,3548574,3549091,3549492,3550346,3550755,3551492,3552479	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; similar to ROC2 (AtCYP19-3)
chr13	3552575	3556962	3553955	3556288	-	Cre13.g588150.t1.2	Cre13.g588150.t1.2		3556700,3556079,3555256,3552575	3556962,3556529,3555816,3555042	
chr13	3558300	3571674	3558831	3571299	+	OPR58	Cre13.g588201.t1.1		3558300,3560572,3563713,3564078,3564615,3565048,3565531,3565885,3566363,3567150,3567940,3569240,3569628,3569856,3570460	3560331,3563367,3563875,3564389,3564673,3565260,3565608,3566121,3566734,3567635,3569028,3569413,3569693,3570150,3571674	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain and a long N-terminal domain with no similarity
chr13	3571730	3579047	3571937	3578705	+	Cre13.g588250.t1.1	Cre13.g588250.t1.1		3571730,3572187,3572532,3573241,3573763,3574420,3574711,3575519,3576319,3576781,3577555,3577923,3578190,3578656	3572087,3572299,3572980,3573426,3573935,3574476,3574932,3575669,3576410,3577218,3577613,3578019,3578275,3579047	
chr13	3579140	3588559	3579921	3587517	+	Cre13.g588271.t1.2	Cre13.g588271.t1.2		3579140,3580284,3580669,3580972,3581427,3581767,3581981,3582239,3582563,3582902,3583107,3583413,3583910,3584665,3584987,3585485,3585812,3586104,3586502,3586868,3587144,3587445	3580079,3580390,3580769,3581130,3581491,3581787,3582022,3582317,3582662,3582960,3583193,3583666,3584432,3584823,3585158,3585619,3585852,3586346,3586566,3586925,3587275,3588559	
chr13	3589651	3591559	3590289	3590895	-	MRPL47	Cre13.g588310.t1.1		3591322,3591156,3590787,3590594,3589651	3591559,3591216,3590934,3590623,3590367	
chr13	3591660	3596060	3591834	3595341	+	Cre13.g588350.t1.2	Cre13.g588350.t1.2		3591660,3592032,3592564,3592879,3593164,3593352,3593624,3593908,3594197,3594491,3594847,3595051	3591909,3592319,3592700,3592987,3593235,3593422,3593750,3593979,3594294,3594701,3594910,3596060	
chr13	3598500	3600711	3598603	3598790	+	Cre13.g588368.t1.1	Cre13.g588368.t1.1		3598500	3600711	
chr13	3601280	3603489	3602714	3603412	-	Cre13.g588386.t1.1	Cre13.g588386.t1.1		3603352,3601280	3603489,3603128	
chr13	3603544	3608429	3603564	3607687	-	Cre13.g588405.t1.2	Cre13.g588405.t1.2		3607521,3607343,3606899,3605861,3604994,3604593,3604144,3603799,3603544	3608429,3607384,3606940,3606105,3605427,3604692,3604413,3604060,3603564	
chr13	3603544	3608429	3603564	3607687	-	Cre13.g588405.t2.1	Cre13.g588405.t2.1		3607521,3607343,3606899,3605861,3604994,3604593,3604144,3603799,3603544	3608429,3607384,3606940,3606105,3605427,3604692,3604413,3604005,3603564	
chr13	3612279	3617249	3612829	3617178	-	Cre13.g588453.t1.1	Cre13.g588453.t1.1		3616897,3616776,3615911,3615566,3613770,3612279	3617249,3616824,3616149,3615797,3615354,3613665	
chr13	3617360	3619541	3618570	3618907	+	Cre13.g588501.t1.1	Cre13.g588501.t1.1		3617360,3617873,3618509	3617793,3618304,3619541	
chr13	3620710	3625731	3621035	3623418	+	SYP1	Cre13.g588550.t1.2		3620710,3621505,3621875,3622419,3622774,3623250	3621305,3621681,3621950,3622504,3622932,3625731	Expressed Protein. Similar to SYP1/syntaxin 1-type Qa-SNAREs, involved in Plasma Membrane trafficking.
chr13	3625747	3636739	3626211	3636540	-	KIN1-1	Cre13.g588600.t1.1		3636482,3636256,3636151,3635765,3635184,3634856,3634515,3634077,3633857,3633418,3633194,3633013,3632675,3632342,3632068,3631700,3631443,3631108,3628967,3628637,3628262,3628013,3627630,3627305,3627080,3626761,3625747	3636739,3636364,3636190,3635876,3635320,3634906,3634621,3634149,3633931,3633564,3633244,3633072,3632800,3632413,3632148,3631810,3631573,3631227,3630947,3628717,3628339,3628108,3627815,3627415,3627163,3626880,3626610	kinesin-1 family
chr13	3636924	3638839	3638492	3638772	-	Cre13.g588626.t1.1	Cre13.g588626.t1.1		3636924	3638839	
chr13	3639952	3644846	3640157	3643759	+	Cre13.g588650.t1.2	Cre13.g588650.t1.2		3639952,3640594,3640802,3641094,3641694,3642454,3642880	3640322,3640640,3640982,3641344,3642213,3642615,3644846	
chr13	3645217	3650267	3646103	3650226	-	Cre13.g588700.t1.1	Cre13.g588700.t1.1		3649968,3649345,3648917,3648606,3648336,3648054,3647747,3647424,3646981,3646673,3646327,3645217	3650267,3649608,3649091,3648706,3648474,3648130,3647871,3647598,3647184,3646735,3646475,3646155	
chr13	3650404	3653549	3650618	3653398	-	Cre13.g588736.t1.1	Cre13.g588736.t1.1		3652421,3651728,3650404	3653549,3652226,3651482	
chr13	3653604	3660339	3654068	3660040	-	Cre13.g588750.t1.1	Cre13.g588750.t1.1		3659887,3659223,3658856,3658487,3658162,3657501,3657142,3656837,3656404,3655496,3655133,3654619,3653604	3660339,3659558,3659050,3658597,3658230,3657675,3657209,3656982,3656566,3656168,3655233,3654734,3654297	
chr13	3660393	3663439	3660910	3663356	-	Cre13.g588800.t1.2	Cre13.g588800.t1.2		3663103,3662747,3662272,3661988,3661641,3661289,3660393	3663439,3662850,3662474,3662082,3661795,3661423,3661117	
chr13	3663550	3668401	3663808	3668067	+	Cre13.g588850.t1.2	Cre13.g588850.t1.2		3663550,3663995,3664169,3664420,3664620,3664987,3665252,3665752,3666052,3666313,3666521,3666908,3667276,3667618,3667943	3663920,3664008,3664276,3664455,3664724,3665042,3665377,3665863,3666162,3666356,3666593,3666992,3667370,3667739,3668401	
chr13	3668450	3673911	3668483	3673698	+	WEX	Cre13.g588900.t1.1		3668450,3668651,3668775,3671202,3671504,3672161,3672512,3672697,3672906,3673113,3673406	3668558,3668705,3670980,3671308,3671869,3672252,3672562,3672753,3672960,3673209,3673911	
chr13	3673919	3676769	3675001	3676508	-	Cre13.g588950.t1.2	Cre13.g588950.t1.2		3676327,3673919	3676769,3676074	
chr13	3676884	3687469	3677478	3687382	-	Cre13.g588959.t1.2	Cre13.g588959.t1.2		3686989,3686349,3680093,3676884	3687469,3686837,3686122,3679938	
chr13	3687570	3688841	3687601	3688339	+	Cre13.g589000.t1.2	Cre13.g589000.t1.2		3687570,3688014,3688225	3687813,3688065,3688841	
chr13	3689508	3695853	3690387	3695652	-	Cre13.g589050.t1.2	Cre13.g589050.t1.2		3695601,3695145,3694827,3694560,3694205,3693993,3693416,3693035,3692538,3692114,3691881,3691402,3690768,3689508	3695853,3695481,3694932,3694657,3694269,3694010,3693549,3693131,3692657,3692227,3691956,3691604,3691112,3690492	
chr13	3695954	3698738	3696170	3698073	+	Cre13.g589100.t1.2	Cre13.g589100.t1.2		3695954,3696407,3696918,3697256,3697519,3697934	3696173,3696561,3697053,3697304,3697672,3698738	
chr13	3700394	3704595	3700590	3704423	+	Cre13.g589150.t1.1	Cre13.g589150.t1.1		3700394,3701022,3701566,3701888,3702356,3703001,3703306,3703544	3700823,3701139,3701664,3702010,3702451,3703081,3703350,3704595	
chr13	3704644	3711905	3704674	3711032	+	Cre13.g589167.t1.2	Cre13.g589167.t1.2		3704644,3705309,3705817,3706236,3706553,3706938,3707274,3709686,3710080,3710386,3710824	3705070,3705528,3705962,3706369,3706715,3707004,3709372,3709817,3710217,3710594,3711905	
chr13	3711954	3717795	3711998	3715098	+	Cre13.g589200.t1.1	Cre13.g589200.t1.1		3711954,3712258,3713009,3713369,3713706	3712094,3712328,3713131,3713507,3717795	
chr13	3718454	3723574	3718690	3723198	+	Cre13.g589250.t1.2	Cre13.g589250.t1.2		3718454,3718971,3719281,3719681,3720073,3720750,3721010,3721470,3721754,3722166,3722428,3722757,3723054	3718796,3719080,3719399,3719754,3720203,3720788,3721104,3721533,3721855,3722228,3722514,3722828,3723574	
chr13	3723634	3729865	3723813	3729358	+	Cre13.g589300.t1.2	Cre13.g589300.t1.2		3723634,3723894,3724372,3724696,3725162,3725455,3725668,3725929,3726345,3726573,3727133,3727616,3728049,3728499,3729027	3723828,3724118,3724534,3724877,3725231,3725518,3725722,3726027,3726417,3726979,3727353,3727771,3728347,3728745,3729865	Condensin complex subunit H protein, ChromDB CPH341
chr13	3729868	3734813	3730506	3734674	-	FBB6	Cre13.g589350.t1.2		3734426,3733479,3733070,3731813,3729868	3734813,3734235,3733281,3732860,3731652	Conserved protein found in ciliated organisms, with an unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr13	3735158	3739313	3736149	3739076	-	PRL6	Cre13.g589400.t1.1		3739012,3738184,3737979,3737656,3737320,3736982,3736288,3735158	3739313,3738800,3738036,3737819,3737400,3737120,3736719,3736149	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; similar to LSG1, a Volvox carteri PR-1 like protein [PMID: 11891059] expressed during senescence of somatic cells; probably an extracellular protein, containing SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains; cd00168
chr13	3740489	3741113	3740617	3740840	-	Cre13.g589426.t1.1	Cre13.g589426.t1.1		3740489	3741113	
chr13	3741314	3746284	3741449	3745478	+	Cre13.g589450.t1.2	Cre13.g589450.t1.2		3741314,3741868,3742835,3743275,3743976,3744675	3741691,3742633,3743046,3743848,3744507,3746284	
chr13	3746674	3757355	3746986	3755015	+	PTK9	Cre13.g589500.t1.1		3746674,3747456,3747985,3748387,3749589,3750479,3751105,3751937,3752312,3752685,3752986,3753196,3753430,3753752,3754148,3754485	3747241,3747552,3748098,3749410,3750331,3750866,3751642,3752029,3752392,3752806,3753054,3753257,3753541,3753851,3754391,3757355	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr13	3760048	3761950	3760842	3761851	-	Cre13.g589550.t1.1	Cre13.g589550.t1.1		3761236,3760048	3761950,3760842	
chr13	3760048	3761803	3760842	3761757	-	Cre13.g589550.t2.1	Cre13.g589550.t2.1		3761731,3761236,3760048	3761803,3761668,3760842	
chr13	3761858	3768583	3763172	3768481	-	Cre13.g589600.t1.2	Cre13.g589600.t1.2		3768189,3767975,3767697,3767386,3766979,3766552,3766197,3765957,3765431,3765109,3764864,3764350,3761858	3768583,3768087,3767813,3767517,3767122,3766653,3766312,3766017,3765511,3765219,3764926,3764619,3764219	
chr13	3768648	3777393	3769497	3777287	-	Cre13.g589650.t1.2	Cre13.g589650.t1.2		3775754,3775419,3775029,3774783,3774304,3773978,3773199,3772852,3771234,3770640,3768648	3777393,3775526,3775123,3774888,3774552,3774135,3773604,3772923,3772595,3770972,3770418	
chr13	3777520	3780867	3777745	3780057	+	VPS20	Cre13.g589700.t1.2		3777520,3777977,3778345,3778932,3779343,3779740,3779910	3777786,3778055,3778497,3779021,3779456,3779820,3780867	Expressed Protein. Similar to VPS20, a SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes)
chr13	3780926	3784043	3781722	3783910	-	Cre13.g589750.t1.1	Cre13.g589750.t1.1		3784023,3783720,3783126,3782191,3780926	3784043,3783912,3783464,3782877,3781943	
chr13	3784154	3792695	3784595	3791447	+	Cre13.g589800.t1.2	Cre13.g589800.t1.2		3784154,3784704,3785001,3785627,3785988,3786367,3786713,3786969,3787359,3787732,3788023,3788504,3788869,3789132,3789462,3789784,3790156,3790678,3790913	3784635,3784747,3785165,3785697,3786068,3786454,3786799,3787044,3787440,3787831,3788115,3788560,3788973,3789261,3789529,3789913,3790374,3790808,3792695	
chr13	3794234	3801924	3794319	3800719	+	Cre13.g589870.t1.1	Cre13.g589870.t1.1		3794234,3794442,3794777,3795049,3795306,3795886,3796192,3796576,3796831,3797373,3797804,3798220,3799049,3799413,3799873,3800093,3800492	3794350,3794565,3794834,3795100,3795387,3795994,3796283,3796696,3796934,3797454,3797845,3798280,3799173,3799444,3799945,3800222,3801924	
chr13	3808366	3815845	3808545	3815208	+	Cre13.g589940.t1.1	Cre13.g589940.t1.1		3808366,3808734,3809042,3809583,3809852,3810587,3810936,3811232,3811733,3812129,3812516,3813142,3813630,3813988,3814462,3814910,3815202	3808562,3808890,3809411,3809698,3810350,3810814,3811084,3811535,3811954,3812277,3813014,3813369,3813778,3814291,3814683,3815058,3815845	
chr13	3816184	3826125	3816913	3825076	+	Cre13.g590010.t1.1	Cre13.g590010.t1.1		3816184,3817251,3817711,3817854,3818660,3819394,3819919,3820444,3820640,3820767,3820957,3821224,3821472,3821754,3821962,3822140,3822348,3822557,3822765,3822973,3823389,3823597,3823805,3824013,3824221,3824429	3817105,3817361,3817733,3817914,3818890,3819621,3820146,3820542,3820707,3820902,3821163,3821415,3821679,3821819,3822027,3822205,3822413,3822622,3822830,3823038,3823454,3823662,3823870,3824078,3824286,3826125	
chr13	3816184	3826125	3816913	3825076	+	Cre13.g590010.t2.1	Cre13.g590010.t2.1		3816184,3817251,3817919,3818660,3819394,3819919,3820444,3820640,3820767,3820957,3821224,3821472,3821754,3821962,3822140,3822348,3822557,3822765,3822973,3823389,3823597,3823805,3824013,3824221,3824429	3817105,3817361,3817924,3818890,3819621,3820146,3820542,3820707,3820902,3821163,3821415,3821679,3821819,3822027,3822205,3822413,3822622,3822830,3823038,3823454,3823662,3823870,3824078,3824286,3826125	
chr13	3826518	3841703	3827903	3841112	-	Cre13.g590150.t1.1	Cre13.g590150.t1.1		3840997,3840240,3839836,3839463,3839090,3838717,3838344,3837971,3837598,3837225,3836852,3836479,3836106,3835733,3835420,3835024,3834882,3834740,3834538,3834437,3834191,3833641,3833063,3832857,3832624,3832431,3831762,3831218,3830513,3830119,3829413,3826518	3841703,3840923,3840134,3839636,3839263,3838890,3838517,3838144,3837771,3837398,3837025,3836652,3836279,3835906,3835533,3835344,3834938,3834823,3834567,3834466,3834364,3833970,3833398,3832913,3832752,3832538,3832331,3831520,3830977,3830271,3829877,3829172	
chr13	3841844	3863575	3842485	3861504	+	Cre13.g590200.t1.1	Cre13.g590200.t1.1		3841844,3842720,3843452,3843801,3844097,3844599,3844990,3845373,3845999,3846487,3847011,3847512,3847935,3848355,3848981,3849469,3849827,3850308,3850731,3851142,3851892,3852240,3852536,3853037,3853433,3853820,3854446,3854934,3855292,3855769,3856199,3856610,3857360,3857708,3858004,3858505,3858901,3859288,3859914,3860401,3860767,3861241	3842491,3843218,3843679,3843949,3844400,3844820,3845138,3845871,3846226,3846635,3847314,3847733,3848083,3848853,3849208,3849617,3850130,3850529,3850879,3851640,3852119,3852388,3852839,3853258,3853581,3854318,3854673,3855082,3855595,3855990,3856347,3857108,3857587,3857856,3858307,3858726,3859049,3859786,3860141,3860549,3861070,3863575	
chr13	3867234	3871251	3867426	3869794	+	Cre13.g590225.t1.1	Cre13.g590225.t1.1		3867234,3868009,3868298,3868684,3868842,3869027,3869225,3869407,3869709	3867705,3868080,3868528,3868736,3868920,3869103,3869283,3869524,3871251	
chr13	3867234	3871035	3867426	3869794	+	Cre13.g590225.t2.1	Cre13.g590225.t2.1		3867234,3868009,3868298,3868684,3868842,3869027,3869225,3869407,3869709	3867705,3868080,3868528,3868736,3868920,3869103,3869283,3869524,3871035	
chr13	3871244	3875159	3871328	3873796	+	Cre13.g590251.t1.1	Cre13.g590251.t1.1		3871244,3871630,3872046,3873098	3871448,3871770,3872949,3875159	
chr13	3876513	3884998	3877391	3884705	-	URK2	Cre13.g590300.t1.1		3884642,3884016,3883561,3883187,3882934,3882599,3882162,3881750,3881460,3880985,3880492,3879753,3879446,3879074,3878685,3876513	3884998,3884117,3883623,3883277,3882978,3882669,3882284,3881854,3881539,3881075,3880616,3879816,3879476,3879366,3878705,3877685	ATP binding / adenylate cyclase/ kinase/ uridine kinase - cd228, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48)
chr13	3885273	3888238	3886159	3887947	-	Cre13.g590350.t1.2	Cre13.g590350.t1.2		3887829,3887671,3887345,3886976,3886717,3885273	3888238,3887746,3887560,3887087,3886815,3886543	Basic-leucine zipper (bZIP) transcription factor
chr13	3888386	3892119	3888590	3891019	+	Cre13.g590400.t1.1	Cre13.g590400.t1.1		3888386,3889003,3889280,3889530,3889960,3890328,3890782	3888751,3889051,3889392,3889625,3890092,3890492,3892119	
chr13	3895229	3900180	3896360	3899294	+	Cre13.g590450.t1.1	Cre13.g590450.t1.1		3895229,3896309,3897031,3898802	3895562,3896885,3898572,3900180	
chr13	3900218	3904765	3901147	3904710	-	FAD6	Cre13.g590500.t1.1		3904677,3904558,3904424,3904204,3903986,3903545,3903126,3902695,3901858,3901605,3900218	3904765,3904588,3904479,3904359,3904129,3903696,3903207,3902797,3902098,3901719,3901309	Omega-6-FAD, chloroplast isoform [PMID: 9498569]
chr13	3904953	3908728	3906031	3908537	-	COA5	Cre13.g590550.t1.1		3908317,3907896,3907082,3906638,3904953	3908728,3908105,3907756,3906774,3906367	Catalyzes the fourth step (out of five) of CoA bosynthesis from pantothenate
chr13	3909368	3927508	3911272	3927393	-	PDE32	Cre13.g590600.t1.1		3927281,3927066,3926807,3926216,3924754,3924429,3923797,3923608,3923351,3923162,3922905,3922716,3922459,3922272,3922048,3921794,3921380,3921126,3920938,3920681,3920270,3920019,3919666,3919406,3919196,3918942,3918675,3918475,3918219,3917989,3917694,3917156,3916902,3916408,3915929,3914646,3914247,3913988,3913352,3913075,3912540,3912139,3911744,3909368	3927508,3927186,3926948,3926427,3925981,3924587,3923955,3923661,3923509,3923215,3923063,3922769,3922617,3922325,3922101,3921952,3921433,3921284,3920991,3920839,3920323,3920177,3919719,3919564,3919249,3919100,3918728,3918528,3918377,3918042,3917852,3917293,3916964,3916572,3916024,3915455,3914360,3914110,3913491,3913216,3912652,3912295,3911887,3911452	
chr13	3909368	3927508	3911272	3927393	-	PDE32	Cre13.g590600.t2.1		3927281,3927066,3926807,3926216,3924754,3924429,3924055,3923797,3923608,3923351,3923162,3922905,3922716,3922459,3922272,3922048,3921794,3921380,3921126,3920938,3920681,3920270,3920019,3919666,3919406,3919196,3918942,3918675,3918219,3917989,3917694,3917156,3916902,3916408,3915929,3914646,3914247,3913988,3913352,3913075,3912540,3912139,3911744,3909368	3927508,3927186,3926948,3926427,3925981,3924587,3924108,3923955,3923661,3923509,3923215,3923063,3922769,3922617,3922325,3922101,3921952,3921433,3921284,3920991,3920839,3920323,3920177,3919719,3919564,3919249,3919100,3918728,3918377,3918042,3917852,3917293,3916964,3916572,3916024,3915455,3914360,3914110,3913491,3913216,3912652,3912295,3911887,3911452	
chr13	3909368	3927508	3911272	3927393	-	PDE32	Cre13.g590600.t3.1		3927281,3927066,3926807,3926216,3924754,3924429,3923797,3923608,3923351,3923162,3922905,3922716,3922459,3922272,3922048,3921794,3921380,3921126,3920938,3920681,3920270,3920019,3919666,3919406,3919196,3918942,3918675,3918219,3917989,3917694,3917156,3916902,3916408,3915929,3914646,3914247,3913988,3913352,3913075,3912540,3912139,3911744,3909368	3927508,3927186,3926948,3926430,3925981,3924587,3923955,3923661,3923509,3923215,3923063,3922769,3922617,3922325,3922101,3921952,3921433,3921284,3920991,3920839,3920323,3920177,3919719,3919564,3919249,3919100,3918728,3918377,3918042,3917852,3917293,3916964,3916572,3916024,3915455,3914360,3914110,3913491,3913216,3912652,3912295,3911887,3911452	
chr13	3909368	3927508	3911272	3927393	-	PDE32	Cre13.g590600.t4.1		3927281,3927066,3926807,3926216,3924754,3924429,3923797,3923608,3923351,3923162,3922905,3922716,3922459,3922272,3922048,3921794,3921380,3921126,3920938,3920681,3920270,3920019,3919666,3919406,3919196,3918942,3918675,3918219,3917989,3917694,3917156,3916902,3916408,3915929,3914646,3914247,3913988,3913352,3913075,3912540,3912139,3911744,3909368	3927508,3927186,3926948,3926427,3925981,3924587,3923955,3923661,3923509,3923215,3923063,3922769,3922617,3922325,3922101,3921952,3921433,3921284,3920991,3920839,3920323,3920177,3919719,3919564,3919249,3919100,3918728,3918377,3918042,3917852,3917293,3916964,3916572,3916024,3915455,3914360,3914110,3913491,3913216,3912652,3912295,3911887,3911452	
chr13	3909368	3927508	3911272	3927393	-	PDE32	Cre13.g590600.t5.1		3927281,3927066,3926807,3926216,3924754,3924429,3923797,3923608,3923351,3923162,3922905,3922716,3922459,3922272,3922048,3921794,3921380,3921126,3920938,3920681,3920019,3919666,3919406,3919196,3918942,3918675,3918219,3917989,3917694,3917156,3916902,3916408,3915929,3914646,3914247,3913988,3913352,3913075,3912540,3912139,3911744,3909368	3927508,3927186,3926948,3926427,3925981,3924587,3923955,3923661,3923509,3923215,3923063,3922769,3922617,3922325,3922101,3921952,3921433,3921284,3920991,3920839,3920177,3919719,3919564,3919249,3919100,3918728,3918377,3918042,3917852,3917293,3916964,3916572,3916024,3915455,3914360,3914110,3913491,3913216,3912652,3912295,3911887,3911452	
chr13	3927679	3929739	3927966	3928407	+	Cre13.g590626.t1.1	Cre13.g590626.t1.1		3927679,3928225	3927973,3929739	
chr13	3930743	3934468	3931505	3934419	-	Cre13.g590650.t1.2	Cre13.g590650.t1.2		3933321,3932967,3932459,3932039,3930743	3934468,3933132,3932638,3932199,3931562	
chr13	3934959	3941740	3935074	3940779	+	Cre13.g590700.t1.1	Cre13.g590700.t1.1		3934959,3935461,3936067,3936960,3937433,3937947,3938745,3939699,3940138,3940497	3935254,3935619,3936706,3937069,3937528,3938111,3938831,3939770,3940233,3941740	
chr13	3942153	3943188	3942654	3943123	-	HTB21	Cre13.g590750.t1.2		3942153	3943188	replication linked H2B; histone gene cluster XXI (type BA) [PMID: 8590479, variant sequence confirmed]
chr13	3943289	3944247	3943404	3943804	+	HTA21	Cre13.g590800.t1.2		3943289	3944247	replication linked H2A; histone gene cluster XXI (type BA)
chr13	3945030	3963878	3946314	3963701	-	Cre13.g590850.t1.2	Cre13.g590850.t1.2		3963533,3963030,3962511,3961858,3961406,3961013,3960535,3959916,3959578,3959293,3958955,3958537,3957065,3950746,3945030	3963878,3963179,3962579,3962139,3961672,3961093,3960830,3960257,3959653,3959383,3959131,3958775,3958345,3956904,3950547	
chr13	3964029	3965848	3964575	3964840	+	APC11	Cre13.g590900.t1.2		3964029,3964455	3964316,3965848	Subunit of anaphase promoting complex; contains a RING domain.
chr13	3964029	3965848	3964575	3964840	+	APC11	Cre13.g590900.t2.1		3964029,3964479	3964316,3965848	Subunit of anaphase promoting complex; contains a RING domain.
chr13	3965944	3970558	3966758	3970363	-	Cre13.g590905.t1.2	Cre13.g590905.t1.2		3967843,3965944	3970558,3967694	
chr13	3971515	3976858	3972576	3976336	-	Cre13.g590950.t1.2	Cre13.g590950.t1.2		3973759,3971515	3976858,3973146	
chr13	3976959	3982530	3977255	3981710	+	Cre13.g591000.t1.2	Cre13.g591000.t1.2		3976959,3977619,3978702,3979242,3979856,3980584,3980939,3981521	3977266,3978302,3978930,3979369,3980285,3980670,3981061,3982530	
chr13	3984438	3993830	3984796	3993775	-	Cre13.g591050.t1.2	Cre13.g591050.t1.2		3993728,3993323,3993261,3991332,3987816,3987424,3986977,3986498,3985794,3985382,3984438	3993830,3993328,3993278,3992719,3991047,3987568,3987072,3986731,3986151,3985515,3984946	
chr13	4014730	4024955	4014813	4024749	-	Cre13.g591073.t1.2	Cre13.g591073.t1.2		4024215,4018774,4018183,4017924,4017405,4016514,4015791,4015395,4014991,4014730	4024955,4023951,4018307,4017972,4017509,4016920,4016137,4015459,4015061,4014835	
chr13	4025010	4041585	4025728	4041457	-	MSC5	Cre13.g591100.t1.1		4041396,4037868,4037551,4037068,4036638,4036025,4035409,4035051,4032976,4032666,4031356,4031025,4030175,4029621,4029300,4028836,4028474,4028022,4027767,4027293,4026818,4026481,4026230,4025010	4041585,4041217,4037601,4037146,4036801,4036131,4035538,4035143,4034413,4032799,4031391,4031099,4030418,4029895,4029395,4028881,4028523,4028161,4027772,4027473,4026864,4026619,4026266,4025835	protein of unknown function with mechanosensitive ion channel (MSC) like domain
chr13	4042107	4043205	4042725	4043125	-	HTA22	Cre13.g591150.t1.2		4042107	4043205	replication linked H2A; histone gene cluster XXII (type BA)
chr13	4043326	4044379	4043410	4043879	+	HTB22	Cre13.g591200.t1.2		4043326	4044379	replication linked H2B; histone gene cluster XXII (type BA) [PMID: 8590479, variant sequence confirmed]
chr13	4044420	4050795	4045462	4050613	-	EZY20	Cre13.g591250.t1.1		4050490,4050206,4049846,4049571,4048716,4048196,4047635,4047054,4046713,4046103,4044420	4050795,4050400,4050092,4049637,4048767,4048270,4047739,4047176,4046802,4046211,4045698	unknown function
chr13	4044420	4050795	4045462	4050613	-	EZY20	Cre13.g591250.t2.1		4050559,4050206,4049846,4049571,4048716,4048196,4047635,4047054,4046713,4046103,4044420	4050795,4050400,4050092,4049637,4048767,4048270,4047739,4047176,4046802,4046211,4045698	unknown function
chr13	4051580	4077705	4053235	4077343	-	Cre13.g591300.t1.1	Cre13.g591300.t1.1		4076676,4075457,4075005,4074297,4073715,4073361,4073039,4072647,4072000,4071419,4069147,4068816,4067024,4066660,4066174,4065266,4063221,4062664,4062011,4061222,4060707,4060430,4060098,4057089,4056643,4056335,4055882,4055584,4055339,4054986,4054446,4051580	4077705,4076375,4075258,4074671,4073966,4073487,4073174,4072907,4072131,4071757,4071207,4069009,4068050,4066782,4066389,4065985,4065081,4062932,4062429,4061731,4060848,4060510,4060196,4059749,4056766,4056465,4055939,4055651,4055383,4055117,4054567,4054340	
chr13	4079000	4083075	4079559	4082821	-	MFT27	Cre13.g591350.t1.1		4082605,4081948,4080731,4080074,4079000	4083075,4082384,4081346,4080242,4079852	Permease
chr13	4083186	4093397	4083256	4092947	+	COA1	Cre13.g591400.t1.1		4083186,4083652,4084375,4084881,4085311,4085743,4086203,4086599,4086861,4087455,4088139,4089054,4089447,4090056,4090430,4090922,4091428,4091746,4092722	4083329,4083939,4084500,4085051,4085372,4085883,4086292,4086683,4086985,4087601,4088731,4089209,4089572,4090250,4090518,4091060,4091533,4092369,4093397	Catalyzes the first step of CoA biosynthesis from pantothenate.  Similar to COA2
chr13	4093466	4099562	4093667	4099160	+	Cre13.g591450.t1.2	Cre13.g591450.t1.2		4093466,4094406,4094784,4095356,4095898,4096403,4097217,4097744,4098260	4093880,4094513,4094924,4095444,4096087,4096510,4097402,4097830,4099562	
chr13	4099666	4105087	4099989	4104552	+	PUS2	Cre13.g591501.t1.1		4099666,4100194,4100590,4101287,4101676,4102254,4102630,4103118,4103428,4103868,4104464	4100086,4100292,4101150,4101381,4101780,4102397,4102783,4103224,4103557,4103961,4105087	
chr13	4106266	4114472	4106466	4113499	+	SRR20	Cre13.g591550.t1.1		4106266,4106642,4106952,4107724,4107945,4108581,4109056,4109664,4110029,4110778,4111598,4111846,4112028,4112390,4113127,4113434	4106508,4106804,4107395,4107828,4108421,4108916,4109490,4109762,4110502,4111135,4111674,4111872,4112097,4112919,4113282,4114472	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr13	4115146	4125018	4115479	4123829	+	CYG40	Cre13.g591600.t1.1		4115146,4115713,4116169,4116445,4117150,4117597,4118055,4118363,4118745,4119103,4119616,4120006,4120312,4120590,4121876,4122314,4122747,4123077,4123526	4115533,4115841,4116283,4116677,4117325,4117710,4118138,4118415,4118865,4119243,4119676,4120095,4120368,4121535,4121988,4122509,4122880,4123157,4125018	Protein with potential tubulin tyrosine ligase domain and domain similar to membrane guanylyl cyclase OlGC7 [Oryzias latipes]
chr13	4125060	4127339	4126191	4126798	-	Cre13.g591650.t1.2	Cre13.g591650.t1.2		4127010,4125060	4127339,4126845	
chr13	4127476	4133127	4127620	4132752	+	TTL15	Cre13.g591700.t1.1		4127476,4127997,4128177,4128700,4129045,4129520,4130179,4130557,4130983,4131345,4131915,4132081,4132480	4127828,4128076,4128294,4128824,4129118,4129619,4130323,4130659,4131124,4131490,4131954,4132198,4133127	
chr13	4133130	4136775	4134602	4136672	-	Cre13.g591750.t1.1	Cre13.g591750.t1.1		4136612,4136325,4135947,4135717,4135422,4135017,4133130	4136775,4136455,4136049,4135772,4135557,4135085,4134881	
chr13	4137326	4143245	4137549	4142203	+	Cre13.g591800.t1.2	Cre13.g591800.t1.2		4137326,4137840,4139537,4139807,4140016,4140702,4140990,4141221,4141522,4141789,4142184	4137615,4139212,4139644,4139891,4140572,4140864,4141073,4141352,4141602,4142006,4143245	
chr13	4146386	4149047	4146560	4148393	+	Cre13.g591851.t1.1	Cre13.g591851.t1.1		4146386,4146762,4147066,4147486,4147766,4147897,4148283	4146625,4146867,4147202,4147585,4147790,4148034,4149047	
chr13	4149051	4152205	4150246	4151937	-	PLD6	Cre13.g591900.t1.2		4151775,4151508,4151146,4150838,4150581,4149051	4152205,4151595,4151261,4150988,4150623,4150358	Phospholipase D domain
chr13	4152336	4155067	4152429	4154179	+	Cre13.g591951.t1.1	Cre13.g591951.t1.1		4152336,4152700,4153848,4154050	4152573,4153647,4153931,4155067	
chr13	4155070	4162235	4155944	4162034	-	Cre13.g592000.t1.2	Cre13.g592000.t1.2		4161984,4161592,4158770,4158299,4157891,4157472,4157031,4156787,4156518,4155070	4162235,4161883,4161420,4158575,4158004,4157597,4157146,4156844,4156637,4156325	
chr13	4162356	4167387	4162486	4166717	+	DAL1	Cre13.g592050.t1.2		4162356,4162898,4163242,4163547,4164081,4164355,4164653,4165004,4165372,4165769,4166096,4166525	4162545,4163073,4163391,4163671,4164205,4164478,4164736,4165093,4165542,4165861,4166245,4167387	aminohydrolase family protein
chr13	4167390	4172165	4167597	4172066	-	Cre13.g592100.t1.1	Cre13.g592100.t1.1		4171995,4171438,4171101,4170918,4169835,4167390	4172165,4171837,4171200,4170971,4170724,4169682	
chr13	4172296	4179439	4172587	4179131	+	Cre13.g592150.t1.2	Cre13.g592150.t1.2		4172296,4173174,4173758,4174011,4174754,4175046,4175449,4175705,4175991,4176423,4176662,4176891,4177210,4177508,4177812,4178085,4178374,4178610,4178988	4173040,4173233,4173832,4174475,4174850,4175143,4175547,4175806,4176044,4176528,4176756,4177025,4177344,4177630,4177936,4178168,4178460,4178797,4179439	similar to YEAST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 (Helicase CA8)gi 1172596 sp P23394
chr13	4180050	4191854	4180637	4191501	-	GSN1	Cre13.g592200.t1.2		4191203,4190476,4190225,4189895,4189607,4189301,4188990,4188591,4188133,4187930,4187581,4187268,4186209,4185532,4184585,4184162,4182767,4182497,4181079,4180050	4191854,4190798,4190350,4190128,4189756,4189471,4189126,4188867,4188456,4188002,4187795,4187435,4187122,4186048,4185316,4184425,4184028,4182625,4181244,4180913	NADH-dependent glutamate synthase (EC 1.4.1.14); NADH-dependent glutamine-2-oxoglutarate aminotransferase (NADH-GOGAT); plastid targeting predicted by Target-P
chr13	4191991	4194694	4192842	4194590	-	Cre13.g592250.t1.2	Cre13.g592250.t1.2		4194515,4194102,4193780,4191991	4194694,4194281,4193920,4193664	
chr13	4194805	4199726	4195101	4197934	+	Cre13.g592300.t1.2	Cre13.g592300.t1.2		4194805,4194998,4195434,4195758,4196031,4196262,4196460,4196802,4197067,4197291,4197643	4194894,4195178,4195557,4195847,4196141,4196325,4196587,4196958,4197158,4197440,4199726	
chr13	4199789	4202414	4200500	4202328	-	Cre13.g592350.t1.2	Cre13.g592350.t1.2		4202108,4201748,4201493,4201322,4201087,4200745,4199789	4202414,4201911,4201564,4201373,4201184,4200903,4200617	
chr13	4202553	4206809	4202639	4206415	+	LCI21	Cre13.g592400.t1.1		4202553,4202805,4203099,4203340,4203635,4204152,4204436,4205196,4205503,4205771	4202716,4202853,4203272,4203508,4204060,4204352,4204992,4205388,4205655,4206809	Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr13	4208016	4210764	4208385	4210490	-	COPE1	Cre13.g592450.t1.2		4210331,4210158,4209934,4209777,4209529,4209105,4208669,4208016	4210764,4210247,4210085,4209843,4209597,4209170,4208838,4208479	Expressed Protein. Epsilon-COP. Subunit of COP-I complex involved in vesicle trafficking.
chr13	4210819	4214914	4210936	4214827	-	Cre13.g592500.t1.1	Cre13.g592500.t1.1		4214723,4214438,4214204,4213949,4213507,4213339,4212708,4212460,4212185,4211794,4211489,4211229,4210819	4214914,4214556,4214288,4214053,4213675,4213370,4213122,4212516,4212316,4212007,4211592,4211334,4211043	
chr13	4215015	4219496	4215126	4218919	+	Cre13.g592550.t1.1	Cre13.g592550.t1.1		4215015,4215459,4215740,4216151,4216460,4216891,4217099,4217503	4215324,4215516,4215879,4216219,4216707,4217008,4217224,4219496	
chr13	4219595	4225482	4219819	4224976	+	Cre13.g592551.t1.2	Cre13.g592551.t1.2		4219595,4219956,4221187,4224534	4219855,4220983,4224396,4225482	
chr13	4232169	4234904	4234676	4234866	-	Cre13.g593833.t1.1	Cre13.g593833.t1.1		4232169	4234904	
chr13	4234979	4237934	4237529	4237860	-	Cre13.g595114.t1.1	Cre13.g595114.t1.1		4234979	4237934	
chr13	4237999	4241244	4240898	4241213	-	Cre13.g596395.t1.1	Cre13.g596395.t1.1		4241132,4237999	4241244,4241033	
chr13	4242549	4244592	4243188	4244283	-	Cre13.g597676.t1.1	Cre13.g597676.t1.1		4244485,4244106,4243778,4243526,4242549	4244592,4244344,4243972,4243597,4243329	
chr13	4244639	4245514	4244740	4245353	-	Cre13.g598957.t1.1	Cre13.g598957.t1.1		4244639	4245514	
chr13	4289165	4291384	4289587	4291292	-	Cre13.g600238.t1.1	Cre13.g600238.t1.1		4290304,4289165	4291384,4290072	
chr13	4293955	4305943	4294274	4305486	+	Cre13.g601519.t1.1	Cre13.g601519.t1.1		4293955,4295388,4295916,4297552,4301253,4305170,4305406	4295139,4295641,4296993,4300704,4304413,4305263,4305943	
chr13	4487946	4491239	4488342	4491112	-	Cre13.g602300.t1.2	Cre13.g602300.t1.2		4491008,4490048,4489715,4489291,4487946	4491239,4490741,4489819,4489377,4488987	
chr13	4491331	4495439	4491388	4495021	+	Cre13.g602350.t1.2	Cre13.g602350.t1.2		4491331,4491641,4491825,4492339,4492927,4493215,4493473,4493738,4494149,4494468,4494654,4494937	4491484,4491696,4491902,4492466,4493015,4493274,4493579,4493840,4494244,4494518,4494728,4495439	
chr13	4495441	4504449	4496014	4503389	-	KIN8-1	Cre13.g602400.t1.2		4503695,4503326,4502250,4501876,4501536,4501221,4500902,4500535,4500277,4499977,4499670,4499286,4498928,4498625,4498446,4498204,4497929,4497704,4497456,4496359,4495441	4504449,4503471,4502399,4501947,4501617,4501280,4501005,4500732,4500428,4500088,4499801,4499458,4499055,4498683,4498505,4498299,4497997,4497756,4497564,4497306,4496227	kinesin-8 family
chr13	4504541	4507411	4504752	4504987	+	Cre13.g602425.t1.1	Cre13.g602425.t1.1		4504541	4507411	
chr13	4507458	4509543	4507516	4508977	+	Cre13.g602450.t1.2	Cre13.g602450.t1.2		4507458,4507857,4508052,4508332,4508647,4508842	4507708,4507931,4508104,4508492,4508714,4509543	
chr13	4509590	4512751	4509707	4512109	+	Cre13.g602500.t1.1	Cre13.g602500.t1.1		4509590,4509807,4510163,4510437,4510819,4511135,4511510	4509745,4509954,4510218,4510593,4510901,4511280,4512751	
chr13	4512800	4519381	4513133	4518946	+	Cre13.g602550.t1.1	Cre13.g602550.t1.1		4512800,4513392,4514135,4514706,4515461,4516166,4516814,4518154,4518718	4513214,4513984,4514498,4515284,4516011,4516691,4517832,4518475,4519381	
chr13	4519384	4522138	4520029	4522020	-	Cre13.g602600.t1.2	Cre13.g602600.t1.2		4521728,4521329,4520992,4520424,4519384	4522138,4521610,4521080,4520474,4520116	
chr13	4522230	4525973	4522719	4525365	+	Cre13.g602650.t1.2	Cre13.g602650.t1.2		4522230,4522712,4523209,4523638,4524207,4524618,4524919,4525326	4522362,4522935,4523322,4523772,4524345,4524718,4525005,4525973	
chr13	4526020	4533592	4526200	4532886	+	Cre13.g602700.t1.1	Cre13.g602700.t1.1		4526020,4526376,4526687,4527056,4527421,4527722,4528019,4528337,4529083,4529859,4531709,4532082	4526203,4526427,4526766,4527140,4527488,4527820,4528153,4528912,4529580,4531473,4531827,4533592	
chr13	4533594	4538459	4534920	4538375	-	Cre13.g602750.t1.2	Cre13.g602750.t1.2		4538366,4537767,4537454,4537067,4533594	4538459,4537890,4537548,4537151,4536854	
chr13	4356236	4363669	4357253	4362331	-	Cre13.g602800.t1.1	Cre13.g602800.t1.1		4363396,4362120,4361803,4360039,4359354,4358974,4358735,4358237,4357817,4356236	4363669,4362415,4361844,4360241,4359557,4359165,4358760,4358508,4358092,4357606	
chr13	4363716	4366929	4364213	4366492	-	SRS8	Cre13.g602850.t1.1		4366447,4366046,4365781,4365316,4364760,4363716	4366929,4366296,4365819,4365424,4364885,4364288	putative nuclear SR-like RNA binding protein; serine/arginine rich domain in carboxy-terminal part, contains PF00076 RRM_1 RNA recognition motif. (RRM, RBD, or RNP domain) in N-ter
chr13	4366982	4372489	4367555	4372195	-	CNX2	Cre13.g602901.t1.1		4371236,4370674,4369873,4369266,4368858,4368451,4368168,4366982	4372489,4370806,4370194,4369399,4368995,4368558,4368263,4367732	putative molybdopterin synthase (CNX2), similar to Arabidopsis thaliana AAL38741; putative / molybdenum cofactor biosynthesis enzyme
chr13	4372590	4387271	4373367	4386554	+	Cre13.g602950.t1.1	Cre13.g602950.t1.1		4372590,4374642,4374961,4375417,4376657,4377184,4377685,4378053,4378689,4379218,4379585,4380009,4380437,4380685,4381121,4381797,4382589,4382918,4383190,4383500,4383997,4384641,4384900,4385284,4385855,4386377	4374234,4374699,4375019,4375470,4376806,4377487,4377804,4378438,4378835,4379337,4379659,4380092,4380487,4380861,4381504,4382161,4382661,4382992,4383242,4383658,4384476,4384698,4385004,4385430,4386019,4387271	
chr13	4372590	4387871	4373367	4387383	+	Cre13.g602950.t2.1	Cre13.g602950.t2.1		4372590,4374642,4374961,4375417,4376657,4377184,4377685,4378053,4378689,4379218,4379585,4380009,4380437,4380685,4381121,4381797,4382589,4382918,4383190,4383500,4383997,4384641,4384900,4385284,4385855,4386377,4387383	4374234,4374699,4375019,4375470,4376806,4377487,4377804,4378438,4378835,4379337,4379659,4380092,4380487,4380861,4381504,4382161,4382661,4382992,4383242,4383658,4384476,4384698,4385004,4385430,4386019,4387112,4387871	
chr13	4387320	4391582	4388110	4390350	+	PDE19	Cre13.g603000.t1.2		4387320,4388545,4388711,4389183,4389503,4389863,4390311	4388443,4388646,4389094,4389413,4389607,4390123,4391582	3',5'-cyclic-nucleotide phosphodiesterase similar to that of Homo sapiens, PDE4D_HUMAN
chr13	4387918	4391582	4388314	4390350	+	PDE19	Cre13.g603000.t2.1		4387918,4388545,4388711,4389183,4389503,4389863,4390311	4388443,4388646,4389094,4389413,4389607,4390123,4391582	3',5'-cyclic-nucleotide phosphodiesterase similar to that of Homo sapiens, PDE4D_HUMAN
chr13	4391584	4399559	4393749	4398999	-	Cre13.g603050.t1.2	Cre13.g603050.t1.2		4398417,4397435,4397131,4396911,4396566,4396301,4396011,4394429,4393942,4391584	4399559,4397641,4397259,4396987,4396680,4396376,4396127,4395655,4394219,4393794	
chr13	4399607	4407199	4400410	4406995	-	Cre13.g603100.t1.1	Cre13.g603100.t1.1		4406870,4406629,4406186,4405945,4405146,4404005,4403729,4403515,4403002,4402720,4402190,4401675,4401266,4400652,4399607	4407199,4406794,4406248,4405987,4405287,4404103,4403774,4403536,4403211,4402778,4402285,4401817,4401361,4400832,4400410	
chr13	4399607	4407199	4400410	4406995	-	Cre13.g603100.t2.1	Cre13.g603100.t2.1		4406870,4406629,4406186,4405945,4405146,4404025,4403515,4403002,4402720,4402190,4401675,4401266,4400652,4399607	4407199,4406794,4406248,4405987,4405287,4404103,4403536,4403211,4402778,4402285,4401817,4401361,4400832,4400410	
chr13	4407247	4417049	4407637	4416514	-	Cre13.g603176.t1.1	Cre13.g603176.t1.1		4416085,4415493,4414746,4413821,4413518,4413246,4412593,4411491,4410819,4410343,4408533,4407247	4417049,4415828,4415225,4414360,4413603,4413296,4412902,4412336,4411205,4410467,4410118,4407637	
chr13	4538520	4544335	4538522	4544286	-	Cre13.g603225.t1.1	Cre13.g603225.t1.1		4544114,4543918,4543143,4542449,4541897,4541268,4540905,4540559,4540081,4539707,4539332,4538707,4538520	4544335,4543967,4543346,4542601,4541953,4541321,4541000,4540655,4540163,4539820,4539397,4538793,4538528	
chr13	4417102	4423849	4417611	4423615	-	OPR61	Cre13.g603250.t1.2		4423499,4423364,4422412,4421981,4421553,4418692,4418291,4417102	4423849,4423412,4423233,4422135,4421745,4421300,4418494,4418038	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr13	4423941	4425972	4424066	4425616	+	Cre13.g603300.t1.2	Cre13.g603300.t1.2		4423941,4424222	4424133,4425972	
chr13	4425974	4439359	4428246	4439235	-	CYG56	Cre13.g603350.t1.1		4439218,4439093,4438608,4437866,4437524,4437200,4436498,4435073,4432130,4431212,4430899,4430240,4429878,4429425,4428967,4428734,4425974	4439359,4439140,4438673,4437879,4437690,4437365,4437000,4436377,4434970,4432042,4430991,4430776,4429931,4429610,4429076,4428781,4428388	
chr13	4439460	4458503	4439744	4457940	+	Cre13.g603400.t1.1	Cre13.g603400.t1.1		4439460,4440024,4440925,4442797,4443048,4443633,4444163,4444621,4445440,4446859,4447438,4447724,4448097,4448642,4449115,4449536,4450007,4450489,4450869,4451146,4451865,4452199,4452884,4453323,4454081,4454466,4455235,4455874,4456822,4457344,4457664	4439882,4440689,4442526,4442855,4443324,4443763,4444283,4445142,4446621,4447092,4447524,4447904,4448323,4448697,4449217,4449592,4450129,4450578,4451019,4451237,4451954,4452334,4453013,4453748,4454263,4454694,4455375,4456515,4456995,4457499,4458503	SNF2-related protein.  ChromoDB CHR3424
chr13	4458550	4466291	4459141	4465423	+	Cre13.g603450.t1.2	Cre13.g603450.t1.2		4458550,4459815,4460054,4460822,4461435,4461787,4462997,4463339,4463937,4464374,4464694,4465082,4465351	4459213,4459864,4460495,4461055,4461545,4461967,4463094,4463636,4464131,4464450,4464772,4465131,4466291	
chr13	4466338	4469423	4466405	4468058	+	Cre13.g603500.t1.2	Cre13.g603500.t1.2		4466338,4466880,4467052,4467399,4467975	4466552,4466922,4467125,4467573,4469423	
chr13	4469470	4474932	4470764	4473674	+	Cre13.g603550.t1.2	Cre13.g603550.t1.2		4469470,4470675,4471111,4471458,4471900,4472255,4472631,4472974,4473555	4469489,4470875,4471150,4471537,4472032,4472331,4472748,4473075,4474932	
chr13	4474934	4485079	4476804	4484610	-	Cre13.g603600.t1.1	Cre13.g603600.t1.1		4484995,4484562,4484188,4483819,4483293,4482254,4480838,4480394,4480198,4479986,4479740,4479497,4479312,4479047,4478675,4477509,4477232,4474934	4485079,4484633,4484316,4483938,4483388,4483038,4482142,4480604,4480278,4480090,4479778,4479553,4479374,4479065,4478775,4477655,4477273,4476855	
chr13	4485129	4487899	4486442	4487004	-	Cre13.g603650.t1.2	Cre13.g603650.t1.2		4487890,4486911,4485129	4487899,4487016,4486610	
chr13	4546375	4550766	4546778	4549964	+	DII4	Cre13.g603700.t1.2		4546375,4546771,4547090,4547281,4547522,4547700,4548020,4548862,4549352,4549758	4546571,4546838,4547185,4547427,4547587,4547747,4548191,4549016,4549535,4550766	Actin encoded by the IDA5 locus [gi:34581636, PMID: 9151671]; flagellar inner arm dynein subunit; present in Inner Arm Dynein species a b c d e g and some minor species
chr13	4550815	4564421	4550860	4563077	+	KCA1	Cre13.g603750.t1.1		4550815,4551575,4551902,4552520,4553232,4553733,4554254,4554755,4555089,4555525,4555765,4556097,4556813,4557471,4559684,4560070,4560525,4560861,4561742,4562296,4562940	4551079,4551646,4552045,4552887,4553337,4553880,4554450,4554838,4555198,4555618,4555818,4556219,4557164,4559551,4559849,4560229,4560663,4561451,4561945,4562443,4564421	Calcium-activated BK potassium channel alpha subunit; contains one K+ selective pore domain; sequence shows the K+ filter selection and voltage sensor regions;  related to human KCNMA1
chr13	4564711	4565644	4565056	4565426	-	Cre13.g603776.t1.1	Cre13.g603776.t1.1		4565406,4564711	4565644,4565213	
chr13	4565925	4568916	4565981	4568318	+	Cre13.g603800.t1.1	Cre13.g603800.t1.1		4565925,4568048	4567805,4568916	
chr13	4568934	4572224	4570157	4571848	-	Cre13.g603850.t1.2	Cre13.g603850.t1.2		4571785,4571534,4571307,4570967,4568934	4572224,4571623,4571444,4571092,4570772	
chr13	4573421	4585154	4574300	4584913	-	TSF1	Cre13.g603900.t1.2		4584855,4584656,4583015,4581980,4581306,4580929,4580226,4579795,4579360,4578894,4578316,4577785,4577078,4576722,4576395,4576004,4575229,4574584,4573421	4585154,4584711,4583167,4582052,4581430,4581003,4580318,4579929,4579422,4578993,4578428,4577919,4577122,4576780,4576494,4576123,4575346,4574729,4574411	
chr13	4585949	4590624	4586631	4590329	-	CYN50	Cre13.g603950.t1.2		4589996,4589552,4588620,4588172,4587764,4587225,4585949	4590624,4589688,4588918,4588246,4587863,4587275,4586755	Putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type; similar to CYN48-CYN53
chr13	4591195	4597638	4591652	4595426	+	Cre13.g604000.t1.1	Cre13.g604000.t1.1		4591195,4591620,4591965	4591479,4591743,4597638	
chr13	4597835	4627401	4597990	4626056	+	Cre13.g604050.t1.2	Cre13.g604050.t1.2		4597835,4598494,4598994,4599682,4600206,4600533,4601238,4601936,4602362,4602841,4603708,4604243,4604729,4605015,4605467,4606106,4606720,4607186,4607710,4608196,4608505,4608984,4609252,4609747,4610040,4610830,4611249,4611652,4612676,4613089,4613597,4613999,4614308,4614606,4615129,4615630,4615939,4616276,4616566,4617228,4617568,4617979,4618499,4618815,4619257,4619674,4620462,4620804,4621191,4621433,4621774,4622318,4622731,4623141,4623505,4623728,4624095,4624553,4624925	4598062,4598637,4599113,4599949,4600258,4600612,4601647,4602042,4602501,4603270,4603948,4604542,4604796,4605236,4605854,4606306,4606959,4607277,4607788,4608275,4608609,4609050,4609360,4609842,4610228,4610935,4611506,4612367,4612800,4613251,4613813,4614061,4614407,4614699,4615326,4615710,4615997,4616374,4617040,4617286,4617717,4618199,4618624,4619008,4619320,4620270,4620557,4620881,4621261,4621586,4621860,4622445,4622790,4623213,4623555,4623784,4624210,4624649,4627401	
chr13	4627491	4638084	4628604	4637675	-	Cre13.g604150.t1.2	Cre13.g604150.t1.2		4637256,4636700,4636513,4636120,4635519,4635201,4634724,4634374,4633807,4633454,4631779,4631248,4630899,4630389,4629941,4629575,4627491	4638084,4636782,4636559,4636218,4635654,4635317,4634800,4634469,4633893,4633599,4632166,4631625,4631042,4630482,4630012,4629695,4629001	
chr13	4638225	4648176	4638301	4646956	+	Cre13.g604200.t1.1	Cre13.g604200.t1.1		4638225,4639431,4640039,4640404,4640860,4641145,4641464,4642104,4642574,4643024,4643939,4645085,4645420,4645821,4646307,4646797	4639258,4639601,4640142,4640506,4640999,4641279,4641939,4642342,4642654,4643569,4644043,4645209,4645538,4646053,4646504,4648176	
chr13	4648179	4659444	4648698	4659288	-	Cre13.g604250.t1.1	Cre13.g604250.t1.1		4659227,4658100,4657683,4656944,4656741,4656305,4655793,4655405,4654999,4654438,4653493,4653244,4652802,4652179,4651610,4651207,4650913,4650490,4649989,4649680,4648179	4659444,4659155,4657916,4657407,4656783,4656421,4656121,4655447,4655166,4654662,4654115,4653286,4652885,4652385,4651996,4651242,4651083,4650608,4650094,4649836,4649431	
chr13	4665149	4667634	4666809	4667506	-	Cre13.g604300.t1.2	Cre13.g604300.t1.2		4665149	4667634	
chr13	4667795	4678184	4668215	4677228	+	Cre13.g604350.t1.1	Cre13.g604350.t1.1		4667795,4668526,4669397,4669805,4670019,4670553,4671167,4672659,4673455,4673894,4674228,4674619,4674893,4675084,4675478,4675844,4676295,4676520	4668242,4668578,4669503,4669836,4670237,4670958,4672372,4673148,4673659,4673974,4674296,4674690,4674952,4675146,4675566,4676021,4676336,4678184	
chr13	4667795	4677970	4668215	4677228	+	Cre13.g604350.t2.1	Cre13.g604350.t2.1		4667795,4668526,4669397,4669805,4670019,4670553,4671167,4672659,4673455,4673894,4674228,4674619,4674893,4675084,4675478,4675844,4676295,4676520	4668242,4668578,4669503,4669836,4670237,4670958,4672372,4673148,4673659,4673974,4674296,4674690,4674952,4675146,4675566,4676021,4676336,4677970	
chr13	4679039	4680604	4679115	4679872	-	Cre13.g604400.t1.2	Cre13.g604400.t1.2		4679039	4680604	
chr13	4681595	4691756	4682020	4690978	+	Cre13.g604450.t1.1	Cre13.g604450.t1.1		4681595,4682462,4682886,4683702,4684005,4684761,4688480,4689120,4689628,4690165,4690430,4690652	4682287,4682686,4683549,4683937,4684698,4688270,4688884,4689344,4689984,4690288,4690521,4691756	
chr13	4691805	4703296	4691939	4702836	+	Cre13.g604501.t1.1	Cre13.g604501.t1.1		4691805,4692244,4700548,4701041,4701429,4702002,4702276,4702510	4692054,4700334,4700868,4701265,4701785,4702125,4702367,4703296	
chr13	4703299	4710914	4703503	4710691	-	Cre13.g604550.t1.2	Cre13.g604550.t1.2		4710673,4710473,4710156,4709884,4709081,4708734,4708430,4707915,4707520,4706782,4706463,4705791,4704524,4703299	4710914,4710538,4710305,4709934,4709230,4708829,4708565,4708103,4707758,4707273,4706571,4706043,4704947,4704205	
chr13	4711045	4718896	4711277	4718518	+	Cre13.g604600.t1.2	Cre13.g604600.t1.2		4711045,4715181,4716551,4716972,4717645,4718081,4718426	4714952,4716322,4716765,4717138,4717737,4718165,4718896	
chr13	4719848	4724424	4720401	4724259	-	Cre13.g604650.t1.2	Cre13.g604650.t1.2		4724211,4723974,4723806,4723653,4723424,4722983,4722555,4721587,4721093,4720613,4719848	4724424,4724019,4723890,4723727,4723492,4723166,4722746,4721760,4721275,4720687,4720434	
chr13	4719848	4724295	4720401	4724259	-	Cre13.g604650.t2.1	Cre13.g604650.t2.1		4724211,4723974,4723806,4723653,4723424,4722983,4722555,4721587,4721093,4720613,4719848	4724295,4724019,4723890,4723727,4723492,4723166,4722746,4721760,4721275,4720687,4720434	
chr13	4724798	4727503	4725466	4727018	+	Cre13.g604700.t1.1	Cre13.g604700.t1.1		4724798,4726172,4726532	4725949,4726258,4727503	
chr13	4727506	4730871	4728551	4730362	-	CGL94	Cre13.g604750.t1.2		4730302,4729975,4729567,4729178,4727506	4730871,4730215,4729742,4729328,4728997	Conserved in the Green Lineage
chr13	4730936	4735291	4731435	4735152	-	Cre13.g604800.t1.2	Cre13.g604800.t1.2		4734877,4733723,4733209,4732857,4732468,4731983,4730936	4735291,4734604,4733335,4732984,4732660,4732173,4731676	
chr13	4735392	4740463	4735661	4739696	+	Cre13.g604850.t1.1	Cre13.g604850.t1.1		4735392,4736011,4736509,4737000,4737474,4738108,4738327,4738997	4735805,4736055,4736661,4737050,4737566,4738203,4738419,4740463	
chr13	4740496	4745571	4743147	4745134	-	Cre13.g604905.t1.2	Cre13.g604905.t1.2		4745317,4744993,4740496	4745571,4745150,4744842	
chr13	4746046	4753441	4748933	4752989	-	Cre13.g604950.t1.1	Cre13.g604950.t1.1		4753199,4752782,4752219,4751751,4746046	4753441,4753002,4752449,4752116,4751426	
chr13	4746046	4753441	4748933	4752989	-	Cre13.g604950.t2.1	Cre13.g604950.t2.1		4753199,4752782,4752219,4751751,4746046	4753441,4753002,4752446,4752116,4751426	
chr13	4746046	4753981	4748933	4752887	-	Cre13.g604950.t3.1	Cre13.g604950.t3.1		4753199,4752782,4752219,4751751,4746046	4753981,4752967,4752446,4752116,4751426	
chr13	4755136	4773461	4756773	4772692	-	Cre13.g605000.t1.1	Cre13.g605000.t1.1		4772473,4772055,4771581,4770983,4770515,4769926,4769145,4768276,4766657,4765981,4765110,4764397,4763866,4763517,4763150,4762717,4761855,4761363,4761051,4760583,4760160,4759740,4759287,4758895,4755136	4773461,4772161,4771728,4771356,4770625,4769978,4769532,4768849,4767826,4766161,4765741,4764513,4763907,4763593,4763168,4762821,4762353,4761496,4761104,4760703,4760217,4759820,4759337,4759027,4756983	
chr13	4774432	4784931	4774496	4784055	+	Cre13.g605050.t1.1	Cre13.g605050.t1.1		4774432,4774705,4775492,4776265,4776703,4777422,4777908,4778215,4778639,4779260,4780626,4781176,4781562,4781908,4782535,4782926,4783462,4783962	4774628,4774779,4775574,4776418,4777041,4777681,4777992,4778436,4778821,4780399,4780998,4781336,4781684,4782399,4782662,4783202,4783695,4784931	
chr13	4785202	4797453	4785557	4797320	+	PDE20	Cre13.g605100.t1.2		4785202,4785800,4786054,4786440,4787184,4787546,4788011,4788685,4789070,4789578,4790321,4790713,4791247,4791821,4792720,4793397,4793892,4794333,4794828,4795382,4795775,4796310,4796603,4797260	4785614,4785939,4786127,4786579,4787299,4787603,4788136,4788771,4789272,4789934,4790393,4790931,4791555,4792351,4793136,4793642,4793990,4794463,4795017,4795447,4795963,4796444,4797037,4797453	Similarity to Dictyostelium PDE encoded by regA gene
chr13	4797502	4800759	4798209	4800203	+	MSD2	Cre13.g605150.t1.2		4797502,4798562,4798725,4799106,4799548,4800110	4798492,4798608,4798829,4799195,4799601,4800759	Superoxide dismutase [Mn], mitochondrial precursor; the name MSD1 replaces the previous designation SodA.
chr13	4800766	4806520	4801480	4806315	-	MMP29	Cre13.g605200.t1.1		4806188,4805474,4804863,4804561,4804330,4803917,4803687,4803077,4802710,4802367,4802020,4800766	4806520,4805742,4805281,4804696,4804383,4804047,4803750,4803300,4802779,4802517,4802173,4801820	Matrix metalloproteinase belonging to the neutral zinc metallopeptidase, M peptidase family
chr13	4800766	4806621	4801480	4806315	-	MMP29	Cre13.g605200.t2.1		4806188,4805474,4804863,4804561,4804330,4803917,4803687,4803077,4802710,4802367,4802020,4800766	4806621,4805742,4805281,4804696,4804383,4804047,4803750,4803300,4802779,4802517,4802173,4801820	Matrix metalloproteinase belonging to the neutral zinc metallopeptidase, M peptidase family
chr13	4807082	4818603	4807402	4817604	+	Cre13.g605250.t1.1	Cre13.g605250.t1.1		4807082,4808120,4808797,4809025,4809863,4810173,4810737,4810955,4811400,4812129,4813138,4814209,4814834,4815385,4815734,4817604	4807981,4808659,4808896,4809734,4810043,4810609,4810832,4811272,4812003,4813009,4814055,4814706,4815256,4815552,4817384,4818603	
chr13	4821312	4825011	4821754	4823165	+	Cre13.g605300.t1.1	Cre13.g605300.t1.1		4821312,4821937	4821777,4825011	
chr13	4825846	4830401	4826516	4830172	-	Cre13.g605350.t1.1	Cre13.g605350.t1.1		4830121,4829889,4829685,4829380,4828918,4828674,4828322,4828043,4826797,4825846	4830401,4830053,4829732,4829535,4829166,4828734,4828506,4828158,4826995,4826660	
chr13	4825846	4830401	4826516	4830172	-	Cre13.g605350.t2.1	Cre13.g605350.t2.1		4830121,4829889,4829685,4829380,4828918,4828674,4828322,4828043,4826797,4825846	4830401,4829984,4829732,4829535,4829166,4828734,4828506,4828158,4826995,4826660	
chr13	4831232	4834353	4831432	4832595	+	Cre13.g605368.t1.1	Cre13.g605368.t1.1		4831232,4831857,4832132,4832290	4831700,4831919,4832185,4834353	
chr13	4834366	4840361	4834968	4840256	-	Cre13.g605386.t1.1	Cre13.g605386.t1.1		4840205,4839961,4839758,4839453,4838987,4837177,4836704,4836425,4835252,4834366	4840361,4840068,4839805,4839608,4839235,4837237,4836888,4836540,4835450,4835112	
chr13	4834366	4837431	4834968	4837205	-	Cre13.g605386.t2.1	Cre13.g605386.t2.1		4837404,4837177,4836704,4836425,4835252,4834366	4837431,4837237,4836888,4836540,4835450,4835112	
chr13	4837486	4840361	4838832	4840256	-	Cre13.g605386.t3.1	Cre13.g605386.t3.1		4840205,4839961,4839758,4839453,4838965,4837486	4840361,4840068,4839805,4839608,4839235,4838840	
chr13	4837486	4840361	4838832	4840256	-	Cre13.g605386.t4.1	Cre13.g605386.t4.1		4840205,4839961,4839758,4839453,4838965,4837486	4840361,4840059,4839805,4839608,4839235,4838840	
chr13	4837486	4840361	4838832	4840102	-	Cre13.g605386.t5.1	Cre13.g605386.t5.1		4839961,4839758,4839453,4838965,4837486	4840361,4839805,4839608,4839235,4838840	
chr13	4845472	4848143	4845609	4846814	+	Cre13.g605404.t1.1	Cre13.g605404.t1.1		4845472,4845869,4846608	4845631,4845943,4848143	
chr13	4848146	4852191	4848857	4852044	-	Cre13.g605500.t1.1	Cre13.g605500.t1.1		4851993,4851756,4851543,4851238,4850767,4850520,4850192,4849921,4849138,4848146	4852191,4851926,4851590,4851393,4851015,4850580,4850376,4850036,4849336,4849001	
chr13	4854146	4857921	4854976	4857525	-	Cre13.g605550.t1.1	Cre13.g605550.t1.1		4857504,4857388,4856999,4856468,4856201,4855903,4855622,4855323,4854146	4857921,4857441,4857157,4856719,4856255,4856084,4855737,4855521,4855123	
chr13	4857976	4860711	4858180	4860709	-	OAS1	Cre13.g605600.t1.1		4860673,4860566,4860359,4859889,4859653,4859528,4859157,4858898,4858561,4857976	4860711,4860610,4860472,4860140,4859664,4859609,4859320,4859013,4858759,4858369	Oligoadenylate synthetases are antiviral enzymes that counteract vial attack by degrading viral RNA.  Part of the ?2-5A system?
chr13	4857976	4860711	4858180	4860709	-	OAS1	Cre13.g605600.t2.1		4860673,4860566,4860359,4859889,4859528,4859157,4858898,4858561,4857976	4860711,4860610,4860472,4860140,4859609,4859320,4859013,4858759,4858369	Oligoadenylate synthetases are antiviral enzymes that counteract vial attack by degrading viral RNA.  Part of the ?2-5A system?
chr13	4860759	4865791	4861008	4865692	-	ALD7	Cre13.g605650.t1.2		4865449,4865068,4864561,4864042,4863529,4863127,4862743,4862279,4861751,4861344,4860759	4865791,4865148,4864740,4864211,4863700,4863243,4862826,4862501,4861851,4861427,4861068	Betaine-aldehyde dehydrogenase
chr13	4865892	4867733	4866079	4866957	+	Cre13.g605700.t1.2	Cre13.g605700.t1.2		4865892,4866498,4866774	4866312,4866537,4867733	
chr13	4867742	4870885	4869042	4870765	-	Cre13.g605750.t1.2	Cre13.g605750.t1.2		4870693,4867742	4870885,4870299	
chr13	4871044	4879641	4871854	4879288	-	Cre13.g605800.t1.1	Cre13.g605800.t1.1		4879222,4878953,4878626,4878379,4878081,4877745,4877413,4877092,4876900,4876552,4876319,4875928,4875421,4873231,4871044	4879641,4879072,4878700,4878493,4878208,4877837,4877593,4877198,4876944,4876752,4876399,4876089,4875594,4875258,4873117	
chr13	4880750	4895085	4881359	4894429	-	Cre13.g605850.t1.1	Cre13.g605850.t1.1		4894402,4893654,4893225,4892877,4892346,4891351,4891143,4890664,4890443,4890136,4889789,4889582,4888948,4888097,4887305,4885977,4884651,4884368,4884076,4883583,4880750	4895085,4894304,4893515,4893127,4892745,4892217,4891171,4891057,4890523,4890331,4890012,4889680,4889454,4888840,4887976,4887173,4885851,4884498,4884192,4883870,4883483	
chr13	4895296	4908927	4895779	4908164	+	Cre13.g605900.t1.1	Cre13.g605900.t1.1		4895296,4895942,4896715,4897099,4897481,4897982,4898869,4898985,4899507,4899702,4900021,4900353,4900591,4901223,4902080,4902835,4904172,4905445,4905651,4905923,4906364	4895812,4896511,4896999,4897349,4897880,4898689,4898897,4899402,4899587,4899897,4900244,4900451,4901100,4901969,4902718,4904043,4905348,4905575,4905767,4906213,4908927	
chr13	4914921	4921105	4915226	4920880	-	EFG7	Cre13.g606000.t1.2		4920409,4919966,4919542,4919196,4918716,4918411,4918131,4917875,4917623,4917306,4917026,4916742,4916508,4916293,4915998,4915587,4914921	4921105,4920048,4919668,4919324,4918902,4918538,4918182,4917963,4917703,4917475,4917089,4916817,4916559,4916390,4916143,4915693,4915347	Elongation factor, GTP-binding-like hypothetical protein; possibly organellar
chr13	4921198	4926227	4921228	4925847	+	TSY1	Cre13.g606050.t1.2		4921198,4921442,4921875,4922238,4922637,4923032,4923645,4923994,4924391,4924814,4925343,4925699	4921266,4921554,4921945,4922371,4922755,4923198,4923758,4924110,4924492,4925005,4925506,4926227	
chr13	4926231	4933075	4926260	4932907	-	Cre13.g606101.t1.1	Cre13.g606101.t1.1		4932770,4932068,4931764,4931515,4931172,4930766,4929964,4929427,4929010,4928555,4928029,4927633,4926231	4933075,4932587,4931834,4931527,4931291,4930849,4930339,4929527,4929096,4928655,4928175,4927786,4927406	
chr13	4933134	4936429	4933601	4936347	-	Cre13.g606150.t1.1	Cre13.g606150.t1.1		4936122,4935980,4935812,4935378,4935084,4934848,4934498,4934031,4933134	4936429,4936036,4935879,4935512,4935165,4934904,4934710,4934197,4933872	
chr13	4936556	4942143	4936631	4941662	+	Cre13.g606200.t1.1	Cre13.g606200.t1.1		4936556,4936854,4937188,4937489,4938035,4939089,4939398,4939936,4940511,4941261	4936694,4936973,4937262,4937697,4938851,4939161,4939681,4940326,4940735,4942143	
chr13	4936556	4942143	4936631	4941662	+	Cre13.g606200.t2.1	Cre13.g606200.t2.1		4936556,4936854,4937188,4937489,4938035,4939089,4939398,4939936,4940514,4941261	4936694,4936973,4937262,4937697,4938851,4939161,4939681,4940326,4940735,4942143	
chr13	4942600	4949965	4943685	4949761	-	CYG41	Cre13.g606250.t1.1		4949526,4948940,4948567,4948043,4947751,4947481,4947144,4945781,4944974,4944497,4944277,4943969,4942600	4949965,4949286,4948742,4948156,4947847,4947549,4947241,4946997,4945102,4944806,4944361,4944088,4943856	Protein with C-terminal domain similar to guanylate cyclase isoform A [Drosophila melanogaster]
chr13	4950206	4954095	4950918	4953365	+	Cre13.g606300.t1.1	Cre13.g606300.t1.1		4950206,4951126,4951440,4951953,4952122,4952586,4952803,4953215	4951020,4951281,4951685,4952037,4952327,4952686,4953001,4954095	
chr13	4950866	4954095	4951481	4953365	+	Cre13.g606300.t2.1	Cre13.g606300.t2.1		4950866,4951440,4951953,4952122,4952586,4952803,4953215	4951336,4951685,4952037,4952327,4952686,4953001,4954095	
chr13	4954240	4978745	4954888	4978517	-	Cre13.g606350.t1.1	Cre13.g606350.t1.1		4978463,4974567,4968362,4967908,4967622,4967000,4966659,4965185,4964807,4964304,4963887,4963455,4963145,4962531,4962237,4961852,4961449,4960495,4959910,4959539,4959058,4958695,4958167,4957233,4956745,4956353,4955880,4954240	4978745,4978280,4974170,4968189,4967722,4967381,4966771,4966358,4964922,4964533,4964067,4963616,4963297,4962820,4962322,4961988,4961589,4961076,4960338,4959670,4959270,4958834,4958383,4957970,4957023,4956444,4955978,4955660	
chr13	4954240	4978745	4954888	4978517	-	Cre13.g606350.t2.1	Cre13.g606350.t2.1		4978463,4974567,4968362,4967908,4967622,4967000,4966659,4965185,4964807,4964304,4963887,4963455,4963145,4962531,4962237,4961852,4961449,4960495,4959910,4959539,4959058,4958695,4958167,4957233,4956745,4956353,4955880,4954240	4978745,4978280,4974170,4968189,4967722,4967381,4966771,4966358,4964922,4964533,4964067,4963616,4963297,4962820,4962322,4961988,4961589,4961076,4960338,4959670,4959270,4958834,4958383,4957970,4957020,4956444,4955978,4955660	
chr13	4978800	4980615	4979897	4980581	-	CSB55	Cre13.g606450.t1.2		4980365,4980136,4978800	4980615,4980246,4980020	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr13	4980670	4982483	4981847	4982332	-	Cre13.g606500.t1.2	Cre13.g606500.t1.2		4982215,4982007,4980670	4982483,4982135,4981883	
chr13	4982576	4985089	4982743	4984763	+	Cre13.g606550.t1.1	Cre13.g606550.t1.1		4982576,4983198,4983779,4984173,4984616	4983072,4983564,4983929,4984405,4985089	
chr13	4985136	4990837	4985199	4990250	+	CGK1	Cre13.g606600.t1.1		4985136,4985502,4985797,4986762,4987036,4987291,4987526	4985332,4985596,4986666,4986902,4987158,4987410,4990837	putative cGMP-dependent protein kinase 1, alpha isozyme, serine/threonine kinase domain, protein kinase domain
chr13	4990940	4997585	4991870	4997296	-	Cre13.g606652.t1.1	Cre13.g606652.t1.1		4995813,4995684,4993176,4990940	4997585,4995746,4995161,4993096	
chr13	4997696	5001807	4997898	5000671	+	Cre13.g606700.t1.1	Cre13.g606700.t1.1		4997696,4998155,4998385,4999209	4998027,4998179,4999069,5001807	
chr13	5001812	5025005	5002612	5024883	-	Cre13.g606750.t1.1	Cre13.g606750.t1.1		5024766,5023931,5023507,5023003,5022199,5021039,5020774,5020039,5019775,5019278,5019032,5018761,5018178,5017878,5017465,5017000,5016678,5016233,5015866,5015326,5014826,5014474,5013910,5013671,5013386,5013090,5012796,5012511,5012337,5012074,5011816,5011456,5011059,5010675,5010304,5007623,5007133,5006693,5005393,5005065,5004786,5004374,5001812	5025005,5024446,5023736,5023257,5022764,5022041,5020944,5020497,5019940,5019455,5019183,5018907,5018591,5017956,5017732,5017333,5016837,5016527,5016073,5015669,5015132,5014689,5014276,5013758,5013493,5013219,5012905,5012693,5012406,5012193,5011947,5011584,5011261,5010828,5010504,5010133,5007488,5007000,5006547,5005281,5004930,5004665,5004246	
chr13	5026259	5029025	5026635	5028914	-	Cre13.g606800.t1.2	Cre13.g606800.t1.2		5028514,5028257,5027886,5027527,5027219,5026870,5026259	5029025,5028332,5027931,5027702,5027288,5026944,5026731	
chr13	5029126	5033852	5029162	5032160	+	Cre13.g606850.t1.2	Cre13.g606850.t1.2		5029126,5029648,5030280	5029429,5030056,5033852	
chr13	5034020	5037425	5035183	5036388	-	Cre13.g606900.t1.2	Cre13.g606900.t1.2		5037130,5036624,5036135,5035885,5035601,5034020	5037425,5036942,5036408,5035947,5035654,5035482	
chr13	5037526	5038727	5037904	5038455	+	Cre13.g606950.t1.1	Cre13.g606950.t1.1		5037526,5038090	5037947,5038727	
chr13	5037526	5040917	5039867	5040060	+	Cre13.g606962.t1.1	Cre13.g606962.t1.1		5037526,5038090,5038824,5039139,5039621,5039819	5037947,5038498,5039030,5039363,5039677,5040917	
chr13	5038776	5040917	5039867	5040060	+	Cre13.g606962.t2.1	Cre13.g606962.t2.1		5038776,5039139,5039621,5039819	5039030,5039363,5039677,5040917	
chr13	5040960	5047885	5043518	5047091	-	Cre13.g606974.t1.1	Cre13.g606974.t1.1		5046907,5045072,5040960	5047885,5046819,5044877	
chr13	5048370	5055145	5049647	5054938	-	Cre13.g607000.t1.2	Cre13.g607000.t1.2		5054819,5054542,5054139,5053747,5053361,5052948,5052346,5051638,5050833,5050558,5050342,5049984,5048370	5055145,5054671,5054274,5053845,5053420,5053060,5052627,5051896,5051020,5050647,5050386,5050073,5049749	
chr13	5055266	5058987	5055333	5058482	+	TSU1	Cre13.g607050.t1.2		5055266,5055684,5056121,5056520,5056935,5057360,5057807,5058401	5055369,5055811,5056301,5056644,5057097,5057492,5057988,5058987	Thiosulfate sulfurtransferase (Rhodanese, THTR). Participates in the formation of iron-sulfur complexes, cyanide detoxification or modification of sulfur-containing enzymes. Located in the mitochondrial matrix.
chr13	5058994	5073835	5060817	5073593	-	CYG6	Cre13.g607100.t1.2		5073468,5073292,5072746,5072473,5072203,5071483,5070582,5069699,5069045,5068828,5068215,5067836,5067597,5066072,5064558,5063007,5061527,5058994	5073835,5073388,5072844,5072557,5072291,5072003,5071209,5070326,5069433,5068841,5068654,5068053,5067620,5067415,5065794,5064190,5062792,5061186	Internal domains similar to Guanylyl cyclase, isoform C [Drosophila melanogaster]
chr13	5074780	5083755	5076440	5082693	-	CYG57	Cre13.g607150.t1.1		5082971,5078236,5077636,5076999,5074780	5083755,5082760,5078056,5077433,5076869	Internal domains similar to Guanylyl cyclase, isoform C [Drosophila melanogaster]; similar to adenylate cyclase, type II (EC 4.6.1.1) (ATP pyrophosphate-lyase 2)
chr13	5084476	5091408	5084874	5088993	+	CYG42	Cre13.g607200.t1.1		5084476,5087451,5088162,5088726	5087216,5087928,5088596,5091408	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr13	5091456	5094214	5091503	5093942	+	Cre13.g607250.t1.1	Cre13.g607250.t1.1		5091456,5093060,5093816	5092814,5093536,5094214	
chr13	5094976	5099387	5095199	5098460	+	FAP352	Cre13.g607300.t1.2		5094976,5095337,5095521,5095786,5096138,5096477,5096733,5097038,5097405,5097781,5098165	5095268,5095435,5095579,5095849,5096263,5096541,5096866,5097102,5097568,5097942,5099387	Mitogen-activated protein kinase homolog 5; Downstream kinase in the canonical MAP kinase pathway; Similar to MAPK3
chr13	5099407	5104625	5100596	5104430	-	CAH7	Cre13.g607350.t1.2		5104218,5103741,5103413,5103031,5102684,5102373,5102071,5101718,5101342,5100959,5099407	5104625,5103849,5103535,5103133,5102756,5102475,5102128,5101786,5101458,5101038,5100749	
chr13	5105276	5114137	5105545	5113223	+	Cre13.g607400.t1.1	Cre13.g607400.t1.1		5105276,5106507,5106922,5107192,5107480,5107977,5108327,5108574,5108865,5109160,5109478,5110538,5111025,5111338,5111665,5111852,5112283,5112694,5112997	5106088,5106623,5106935,5107242,5107611,5108046,5108419,5108624,5108954,5109255,5110075,5110584,5111057,5111352,5111720,5111990,5112343,5112733,5114137	
chr13	5114586	5119713	5114621	5119034	+	DAK1	Cre13.g607450.t1.1		5114586,5114865,5115108,5115405,5115665,5116051,5116408,5116662,5117190,5117801,5118258,5118840	5114732,5114919,5115193,5115489,5115816,5116187,5116519,5116855,5117619,5117998,5118417,5119713	contains Pfam domains, PF02733: DAK1 domain and PF02734: DAK2 domain
chr13	5119846	5127927	5119916	5127271	+	Cre13.g607500.t1.2	Cre13.g607500.t1.2		5119846,5120059,5120488,5120892,5121264,5121673,5122072,5122548,5123216,5123725,5124032,5124355,5124912,5125300,5125807,5126211,5126571,5126894,5127195	5119985,5120130,5120604,5121039,5121381,5121753,5122276,5122718,5123296,5123835,5124124,5124479,5124990,5125366,5125997,5126318,5126667,5126969,5127927	
chr13	5127935	5131825	5128754	5131713	-	Cre13.g607550.t1.2	Cre13.g607550.t1.2		5131650,5130902,5130673,5130374,5130097,5129651,5129252,5127935	5131825,5131117,5130707,5130482,5130185,5129778,5129364,5129009	
chr13	5131956	5134787	5132114	5134344	+	RIBFL1	Cre13.g607600.t1.1		5131956,5132656,5133384,5133867	5132523,5133183,5133667,5134787	
chr13	5134856	5156906	5135288	5156394	+	Cre13.g607650.t1.1	Cre13.g607650.t1.1		5134856,5135247,5135491,5135822,5136382,5136696,5137096,5137329,5137631,5138002,5138167,5138455,5138738,5138936,5139153,5139490,5139900,5140429,5141029,5141345,5141795,5142064,5142330,5142613,5142869,5143176,5143872,5144177,5144504,5144753,5145196,5145438,5145853,5146115,5146682,5147022,5147486,5147907,5148266,5148524,5149943,5150218,5150721,5150995,5151234,5151427,5151868,5152498,5152767,5153062,5153295,5153594,5154641,5154908,5155227,5155573,5155746	5135071,5135385,5135717,5136276,5136554,5136912,5137225,5137496,5137912,5138057,5138311,5138616,5138821,5139037,5139373,5139745,5140342,5140797,5141191,5141674,5141962,5142212,5142492,5142771,5143063,5143700,5144048,5144386,5144625,5145062,5145324,5145727,5145990,5146473,5146860,5147381,5147799,5148122,5148425,5149799,5150123,5150565,5150879,5151139,5151294,5151731,5152356,5152626,5152895,5153168,5153445,5154435,5154758,5155069,5155408,5155636,5156906	
chr13	5156930	5161295	5157094	5161020	-	Cre13.g607700.t1.2	Cre13.g607700.t1.2		5160658,5160322,5159947,5159693,5159353,5159047,5158508,5158300,5157904,5157763,5157335,5156930	5161295,5160465,5160081,5159762,5159463,5159097,5158597,5158340,5158108,5157795,5157646,5157235	
chr13	5161606	5166247	5161854	5165726	+	DRC2	Cre13.g607750.t1.2		5161606,5162254,5162543,5162929,5163226,5163695,5164035,5164397,5164884,5165405	5161893,5162340,5162653,5163009,5163318,5163808,5164211,5164714,5165264,5166247	Flagellar Associated Protein; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation; Similar to NYD-SP28; central hub for assembly of the N-DRC
chr13	5170702	5177639	5171414	5176481	-	Cre13.g607800.t1.1	Cre13.g607800.t1.1		5176873,5176283,5175899,5175524,5170702	5177639,5176549,5176147,5175715,5175326	
chr13	5179943	5185979	5180425	5185618	-	Cre13.g607850.t1.2	Cre13.g607850.t1.2		5185551,5184319,5184065,5183531,5183044,5182671,5181962,5180599,5179943	5185979,5184902,5184157,5183680,5183211,5182748,5182499,5181855,5180425	
chr13	5179943	5185979	5180425	5185618	-	Cre13.g607850.t2.1	Cre13.g607850.t2.1		5185551,5184676,5184319,5184065,5183531,5183044,5182671,5181962,5180599,5179943	5185979,5184902,5184516,5184157,5183680,5183211,5182748,5182499,5181855,5180425	
chr13	5186384	5192529	5187700	5192412	-	CPLD68	Cre13.g607900.t1.1		5192121,5191772,5191434,5191190,5190896,5190542,5190316,5189934,5188753,5188491,5188284,5188004,5186384	5192529,5191894,5191590,5191287,5190970,5190772,5190396,5190053,5188851,5188598,5188330,5188066,5187848	
chr13	5192640	5194401	5192762	5193487	+	SELK1	Cre13.g607950.t1.2		5192640,5192983,5193205,5193458	5192784,5193067,5193341,5194401	Model is truncated at C-terminus, add UG at end of protein sequence, with Selenocysteine in position 91; SECIS element in 3'-UTR
chr13	5194460	5197731	5194705	5197362	+	CPLD52	Cre13.g608000.t1.2		5194460,5195182,5195520,5195726,5196111,5196462,5196776,5197030,5197213	5194926,5195296,5195582,5195839,5196185,5196536,5196865,5197093,5197731	
chr14	4237	24165	4844	23927	-	Cre14.g608050.t1.1	Cre14.g608050.t1.1		23844,23498,23213,22379,21848,19202,18779,18544,17941,17549,17084,16802,16154,15751,15580,15289,15003,14765,14533,14190,13864,13495,13124,12881,12538,12297,11934,11741,11511,11235,10721,10261,9960,9559,9174,8893,8477,8246,7927,7281,7061,6792,6067,5745,5499,4237	24165,23597,23401,23073,22250,21723,19062,18646,18382,17824,17353,16845,16532,16047,15624,15393,15125,14869,14586,14390,14068,13631,13291,12967,12732,12374,12102,11838,11618,11294,11103,10585,10121,9838,9451,9065,8783,8344,8130,7730,7117,6869,6639,5959,5565,5372	
chr14	31976	33470	32675	32991	+	Cre14.g608093.t1.2	Cre14.g608093.t1.2		31976	33470	
chr14	33802	38597	33898	38127	+	Cre14.g608100.t2.1	Cre14.g608100.t2.1		33802,34296,34690,35447,35619,35785,36005,36200,36390,37096,37594,38127	34150,34514,35359,35521,35711,35895,36109,36301,37029,37263,37950,38597	
chr14	33642	38597	33898	38127	+	Cre14.g608100.t1.1	Cre14.g608100.t1.1		33642,34296,34690,35447,35619,35785,36005,36200,36390,37096,37594,38127	34150,34514,35359,35521,35711,35895,36109,36301,37029,37263,37950,38597	
chr14	38600	60935	38653	60708	-	Cre14.g608150.t1.1	Cre14.g608150.t1.1		60082,59732,58791,57885,57563,57260,56824,56013,55654,55234,54205,53711,53174,52277,51899,50106,49608,49145,48692,48082,47808,46642,45432,44896,42354,42055,41860,41361,40253,39900,38600	60935,59931,59545,58415,57604,57371,56945,56514,55849,55469,55071,53987,53564,52978,52153,50932,49860,49239,48871,48426,47889,47547,46281,45235,44723,42212,41890,41615,41189,40013,39142	
chr14	61076	74244	61262	73788	+	Cre14.g608200.t1.1	Cre14.g608200.t1.1		61076,66821,67349,68869,69212,69911,70311,70662,71133,71600,73308	66670,66996,68664,69030,69646,70000,70440,70759,71168,72970,74244	
chr14	82672	86005	83335	85356	-	Cre14.g608250.t1.2	Cre14.g608250.t1.2		85004,84075,82672	86005,84772,83335	
chr14	86295	88525	87556	88486	-	Cre14.g608275.t1.1	Cre14.g608275.t1.1		88233,86295	88525,87573	
chr14	88636	95577	89029	94987	+	Cre14.g608300.t1.2	Cre14.g608300.t1.2		88636,89282,89553,90167,90789,90976,91553,92525	89182,89404,89898,90708,90863,91405,92434,95577	
chr14	100026	103212	100333	102846	+	Cre14.g608350.t1.2	Cre14.g608350.t1.2		100026,101414,102558	101236,102295,103212	
chr14	103345	116595	104303	115978	-	Cre14.g608400.t1.2	Cre14.g608400.t1.2		115714,114821,114314,112844,112249,111875,110856,110105,109480,108626,107283,106464,104712,103345	116595,115267,114409,113974,112598,111941,111647,110461,109938,109210,108305,107060,105893,104456	
chr14	117020	129575	118152	129456	-	Cre14.g608452.t1.1	Cre14.g608452.t1.1		129321,128879,127839,127314,124862,124234,123933,122409,119321,119034,117020	129575,129071,127933,127586,125068,124392,124029,123280,121729,119101,118813	
chr14	129726	133357	129829	133036	+	Cre14.g608500.t1.1	Cre14.g608500.t1.1		129726,130245,131321,132102,132444,132806	130027,131034,131801,132198,132501,133357	
chr14	133456	136347	133555	136147	+	Cre14.g608550.t1.2	Cre14.g608550.t1.2		133456,133846	133693,136347	
chr14	139066	140809	139139	140129	+	Cre14.g608600.t1.2	Cre14.g608600.t1.2		139066,139246,139629,139955	139170,139521,139774,140809	
chr14	143493	145125	144880	145085	-	Cre14.g608652.t1.1	Cre14.g608652.t1.1		143493	145125	
chr14	145680	153135	146519	152343	-	Cre14.g608700.t1.2	Cre14.g608700.t1.2		152270,151902,151191,150476,150164,149693,149359,148515,148118,147744,147266,145680	153135,152044,151679,150691,150197,149946,149419,148558,148186,147858,147357,146789	Putative 2-aminoadipate/L-kynurenine transaminase, pyridoxal phosphate-dependent
chr14	153326	157517	153661	157060	+	Cre14.g608750.t1.2	Cre14.g608750.t1.2		153326,154038,154546,156193	153763,154157,155838,157517	
chr14	171488	173579	171550	173050	+	Cre14.g608788.t1.2	Cre14.g608788.t1.2		171488,172205,172735	171554,172356,173579	
chr14	173581	178607	174376	178470	-	Cre14.g608800.t1.2	Cre14.g608800.t1.2		178103,177797,177365,176811,176472,176046,175505,175143,174771,173581	178607,177865,177426,176896,176589,176080,175631,175251,174916,174421	probably 3-oxoacyl-[acyl-carrier-protein] reductase
chr14	178768	182099	179345	181125	+	Cre14.g608850.t1.2	Cre14.g608850.t1.2		178768,179163,180151,180878	178979,179654,180317,182099	
chr14	182218	185543	182538	185092	+	Cre14.g608900.t1.1	Cre14.g608900.t1.1		182218,183631,184756	183438,184509,185543	
chr14	185602	186733	185756	186276	-	Cre14.g608950.t1.2	Cre14.g608950.t1.2		186270,185904,185602	186733,186083,185795	
chr14	190248	192580	190586	192028	+	RPL34A	Cre14.g608970.t1.1		190248,191500,191959	191142,191717,192580	higly similar to nearby RPL34B
chr14	192733	196627	193765	196338	-	Cre14.g608990.t1.1	Cre14.g608990.t1.1		195327,194246,192733	196627,195154,193987	
chr14	196692	198907	197064	198835	-	Cre14.g609010.t1.1	Cre14.g609010.t1.1		198688,198254,197945,197559,196692	198907,198455,198017,197697,197298	
chr14	198962	204487	199109	204429	-	Cre14.g609030.t1.1	Cre14.g609030.t1.1		204423,204057,203398,202619,202152,201224,200461,200094,199549,198962	204487,204236,203534,202681,202209,201298,200565,200143,199655,199321	
chr14	208694	210644	209033	210013	+	RPL34B	Cre14.g609050.t1.2		208694,209485,209944	209127,209702,210644	higly similar to nearby RPL34A
chr14	210652	214177	211397	214053	-	Cre14.g609100.t1.2	Cre14.g609100.t1.2		212997,211887,210652	214177,212825,211634	
chr14	214242	217847	214667	217658	-	Cre14.g609150.t1.1	Cre14.g609150.t1.1		217061,216285,215850,215541,215153,214242	217847,216419,216051,215613,215291,214901	
chr14	218628	232029	219190	231399	+	Cre14.g609202.t1.1	Cre14.g609202.t1.1		218628,219536,219914,220509,220821,221961,222323,222721,223042,223471,225084,225527,225941,226582,228051,228321,228761,229458,229774,230175,230587,231176	219289,219574,220049,220536,220890,222086,222393,222784,223142,223564,225191,225645,226064,226618,228089,228406,228832,229613,229911,230244,230734,232029	May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	233458	241999	233821	241284	+	Cre14.g609250.t1.1	Cre14.g609250.t1.1		233458,234453,235237,235856,236787,237248,237656,238048,238847,239302,240509,241156	234345,234857,235375,236467,236894,237444,237737,238134,239091,239596,240584,241999	
chr14	242148	247629	242272	247221	+	Cre14.g609300.t1.2	Cre14.g609300.t1.2		242148,243036,243466,244100,244582,245137,245633,246308,246944	242626,243101,243586,244244,244745,245300,245758,246372,247629	
chr14	248138	256809	248804	254856	+	Cre14.g609350.t1.1	Cre14.g609350.t1.1		248138,249618,249939,250309,250775,251154,252001,253743	249068,249625,249953,250344,250877,251643,253460,256809	
chr14	257558	262847	257894	262730	-	Cre14.g609400.t1.1	Cre14.g609400.t1.1		262650,262067,261467,261135,260509,259924,259736,259130,258837,258505,257558	262847,262254,261641,261161,260656,260070,259751,259197,258976,258556,257978	
chr14	262978	267419	263129	265792	+	PWR4	Cre14.g609450.t1.2		262978,263431,264070	263177,263892,267419	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr14	267422	272847	269992	272029	-	PWR5	Cre14.g609500.t1.1		272654,272418,272232,272019,271274,270900,267422	272847,272538,272300,272125,271914,270973,270566	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr14	273277	277907	275281	277755	-	Cre14.g609551.t1.1	Cre14.g609551.t1.1		277628,277207,273277	277907,277355,276988	
chr14	278058	283041	278176	282181	+	Cre14.g609600.t1.1	Cre14.g609600.t1.1		278058,278392,278860,279376,279752,280797,281231,282106	278200,278476,278966,279438,279805,280818,281343,283041	
chr14	283088	284661	283133	284243	+	Cre14.g609650.t1.2	Cre14.g609650.t1.2		283088,283447,283668,284047	283316,283461,283771,284661	
chr14	284708	290869	284733	290197	+	Cre14.g609700.t1.1	Cre14.g609700.t1.1		284708,285222,285538,286009,286252,287031,287279,287546,288129,288439,288601,289281,289681	284954,285300,285629,286097,286541,287102,287371,287604,288237,288510,288718,289318,290869	
chr14	290918	297248	291084	296166	+	Cre14.g609750.t1.1	Cre14.g609750.t1.1		290918,291479,291772,292056,292356,293165,293417,293686,294614,294978,295249,295548,295785	291329,291557,291863,292144,292873,293236,293509,293744,294722,295049,295387,295585,297248	
chr14	297648	301452	298107	300812	+	Cre14.g609800.t1.2	Cre14.g609800.t1.2		297648,298874,299188,299646,300537	298340,298952,299279,299743,301452	
chr14	301818	304983	302028	304314	+	Cre14.g609850.t1.2	Cre14.g609850.t1.2		301818,302429,302861,303195,303859	302258,302507,302946,303283,304983	
chr14	305548	312245	305902	311102	+	Cre14.g609900.t1.1	Cre14.g609900.t1.1		305548,306402,306686,306925,307241,307845,308169,308412,308670,308928,309098,309398,309722,310179,310647	306126,306480,306777,307013,307698,307925,308261,308470,308778,308999,309245,309435,309897,310507,312245	
chr14	314041	317067	316595	316944	-	Cre14.g609926.t1.1	Cre14.g609926.t1.1		314041	317067	
chr14	317132	323187	317202	322978	-	Cre14.g609950.t1.2	Cre14.g609950.t1.2		322636,321850,320622,320029,317132	323187,321996,321593,320250,319791	
chr14	323318	324129	323484	323776	+	Cre14.g610000.t1.1	Cre14.g610000.t1.1		323318	324129	
chr14	324178	334398	324187	333820	+	Cre14.g610050.t1.2	Cre14.g610050.t1.2		324178,324942,325413,326311,326809,327622,328026,328539,328883,329173,329717,330181,330952,331274,331717,332035,332527,333703	324391,325037,325598,326421,327249,327666,328165,328630,329006,329332,329832,330547,331002,331356,331819,332204,332662,334398	
chr14	334568	340250	334797	337969	+	Cre14.g610100.t1.1	Cre14.g610100.t1.1		334568,335172,335664,336038,337954	334979,335304,335744,337699,340250	
chr14	340962	346372	341213	345171	+	Cre14.g610150.t1.2	Cre14.g610150.t1.2		340962,341189,341504,342339	341100,341276,342004,346372	
chr14	346942	356266	347078	355380	+	Cre14.g610200.t1.1	Cre14.g610200.t1.1		346942,347276,347463,347720,347936,348378,351793,353652	347099,347325,347522,347799,347994,351647,353511,356266	
chr14	356512	358068	356727	357637	+	Cre14.g610250.t1.2	Cre14.g610250.t1.2		356512	358068	
chr14	358136	362771	359461	362378	-	Cre14.g610300.t1.2	Cre14.g610300.t1.2		362496,362072,360418,359885,358136	362771,362388,361708,360105,359620	
chr14	362820	369791	363257	369725	-	Cre14.g610351.t1.1	Cre14.g610351.t1.1		369450,368566,368101,367239,366863,366326,365477,365156,364170,363648,362820	369791,369095,368357,367731,367013,366430,365783,365206,364526,363722,363356	
chr14	369922	373088	370159	371908	+	Cre14.g610400.t1.2	Cre14.g610400.t1.2		369922,370360,371147	370219,370924,373088	
chr14	374232	379348	374606	379051	+	Cre14.g610450.t1.2	Cre14.g610450.t1.2		374232,374598,375968,376524,377003,377871,378425	374476,375113,376069,376581,377383,378029,379348	
chr14	379394	385471	380456	385371	-	Cre14.g610501.t1.1	Cre14.g610501.t1.1		385325,385054,384489,383899,383096,382724,382341,381793,381339,380860,379394	385471,385103,384740,384057,383212,382777,382448,381843,381429,380999,380540	Putative 3-oxoacyl-[acyl-carrier-protein] reductase-related
chr14	385526	387971	386057	387906	-	Cre14.g610550.t1.1	Cre14.g610550.t1.1		385526	387971	
chr14	388025	391271	388934	391173	-	Cre14.g610566.t1.1	Cre14.g610566.t1.1		391115,390911,390456,390062,389808,389222,388025	391271,390975,390577,390140,389928,389451,388952	
chr14	388025	391271	388934	391173	-	Cre14.g610566.t2.1	Cre14.g610566.t2.1		391115,390895,390456,390062,389808,389222,388025	391271,390905,390577,390140,389928,389451,388952	
chr14	391336	393611	391724	393432	-	Cre14.g610582.t1.1	Cre14.g610582.t1.1		391336	393611	
chr14	402322	405723	402608	402813	+	Cre14.g610599.t1.1	Cre14.g610599.t1.1		402322	405723	
chr14	403402	405723	404127	404423	+	Cre14.g610615.t1.1	Cre14.g610615.t1.1		403402,404057,404265	403456,404167,405723	
chr14	405756	409471	405896	409424	-	Cre14.g610631.t1.1	Cre14.g610631.t1.1		406873,406660,406226,405756	409471,406674,406344,405896	
chr14	409526	413157	409957	412616	-	Cre14.g610647.t1.1	Cre14.g610647.t1.1		412259,411784,411354,411107,410260,409526	413157,411902,411432,411227,410483,409975	
chr14	413252	422793	413460	422127	+	Cre14.g610663.t1.1	Cre14.g610663.t1.1		413252,414990,415804,416245,416840,417495,418274,418751,419262,419799,420370,421120,421443	414267,415190,415878,416320,417310,418057,418303,418862,419466,419945,420798,421180,422793	May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	422816	426421	423386	426054	-	PHC72	Cre14.g610700.t1.1		425948,425151,422816	426421,425795,424912	
chr14	426762	439553	426864	438455	+	Cre14.g610750.t1.1	Cre14.g610750.t1.1		426762,427818,428561,429146,429574,430344,430665,431399,431920,432626,433183,433596,434868,435376,435839,436201,436672,437338,437680,438180	427020,427895,428633,429225,429621,430409,430688,431506,431958,432773,433253,433677,434962,435444,435886,436332,436702,437442,437751,439553	
chr14	440212	444073	440781	442091	+	Cre14.g610801.t1.1	Cre14.g610801.t1.1		440212,440543,440770,441028,441254,441613,441938	440479,440666,440832,441108,441289,441726,444073	
chr14	444222	448413	444567	448291	+	Cre14.g610850.t1.1	Cre14.g610850.t1.1		444222,444787,445055,445319,445698,446131,446716,447277,447727,448169	444574,444851,445103,445380,445780,446227,446787,447420,447868,448413	
chr14	448426	459061	448918	458904	-	Cre14.g610900.t1.1	Cre14.g610900.t1.1		458439,458015,457606,457229,456746,456261,455766,455268,455000,454640,454160,453819,453019,452731,452301,451682,450931,450531,450041,449484,448426	459061,458068,457713,457303,456943,456415,455865,455354,455041,454733,454254,453878,453075,452778,452357,451822,450978,450611,450142,449594,449194	
chr14	459162	461761	459364	461343	+	PBD1	Cre14.g610950.t1.2		459162,459926,460588,461256	459646,460043,460682,461761	
chr14	461842	466910	462497	465070	+	Cre14.g611000.t1.1	Cre14.g611000.t1.1		461842,463435	463169,466910	
chr14	468522	471603	468605	471315	+	Cre14.g611051.t1.1	Cre14.g611051.t1.1		468522,469798,471177	469654,470737,471603	
chr14	471606	478221	472333	477873	-	FAP27	Cre14.g611100.t1.2		477992,477752,477240,476858,476414,476146,475687,475098,474585,474095,473644,473520,473249,472765,471606	478221,477878,477387,476954,476519,476267,475770,475172,474638,474219,473773,473552,473320,472861,472509	Similar to palmitoyltransferases
chr14	471606	478221	472333	477873	-	FAP27	Cre14.g611100.t2.1		477992,477752,477240,476858,476414,476146,475687,475098,474585,474095,473644,473249,472765,471606	478221,477878,477387,476954,476519,476267,475770,475172,474638,474219,473773,473320,472861,472509	Similar to palmitoyltransferases
chr14	478372	480991	478943	480861	-	Cre14.g611150.t1.2	Cre14.g611150.t1.2		480815,480684,480510,480326,480061,479807,479441,479143,478372	480991,480726,480603,480445,480126,479918,479587,479265,478990	
chr14	481140	484027	481265	483591	+	Cre14.g611200.t1.2	Cre14.g611200.t1.2		481140,481703,482011,482281,483088,483537	481398,481782,482100,482367,483264,484027	
chr14	484162	492349	484410	492033	+	Cre14.g611250.t1.2	Cre14.g611250.t1.2		484162,484646,484826,485241,485644,486063,486537,486948,487363,487929,488422,488827,489160,489776,490262,490631,491097,491469	484521,484711,485044,485323,485733,486252,486766,487117,487433,488051,488511,488895,489236,489941,490378,490756,491177,492349	
chr14	493380	500751	494877	500137	-	COP3	Cre14.g611300.t1.1		499909,499684,499314,499194,498851,498775,498428,498026,497719,497469,497170,496632,496006,495492,495134,493380	500751,499743,499412,499223,498935,498796,498508,498140,497804,497530,497249,496994,496384,495746,495315,494910	Also described as Chlamydomonas Sensory Opsin A and Channelrhodopsin 1; light-gated proton channel rhodopsin; contains N-terminal rhodopsin domain and C-terminal membrane-associated domain; dominant Phototaxis Photoreceptor, involved in the photoshock response; isolated from eyespot membranes; trafficking into the eyespot and flagella is IFT-mediated
chr14	502795	506571	504368	506355	-	Cre14.g611350.t1.1	Cre14.g611350.t1.1		506316,506164,505953,505520,502795	506571,506212,506002,505684,505301	
chr14	506892	510841	507914	510754	-	Cre14.g611400.t1.2	Cre14.g611400.t1.2		510672,510356,509978,509656,509326,509092,508769,508443,506892	510841,510447,510148,509781,509440,509183,508881,508589,508221	
chr14	511012	524163	511090	521191	+	PLAP7	Cre14.g611450.t1.1		511012,511558,511789,512419,518390,519445,519892,520146,520419,520812,521149	511168,511610,512047,518235,519280,519675,519957,520232,520492,520893,524163	PAP-fibrillin family protein
chr14	525045	533544	527600	533295	-	Cre14.g611484.t1.1	Cre14.g611484.t1.1		533043,532777,532365,531765,531181,529943,529608,529230,528827,528415,525045	533544,532812,532444,531867,531266,530227,529754,529305,528952,528538,527644	
chr14	525045	533544	527600	533295	-	Cre14.g611484.t2.1	Cre14.g611484.t2.1		533043,532777,532365,531765,531181,530081,529608,529230,528827,528415,525045	533544,532812,532444,531867,531266,530227,529754,529305,528952,528538,527644	
chr14	525045	533544	527600	533295	-	Cre14.g611484.t3.1	Cre14.g611484.t3.1		533043,532777,532365,531765,531181,529230,528827,528415,525045	533544,532812,532444,531867,531266,529305,528952,528538,527644	
chr14	533639	539624	534101	539446	-	Cre14.g611517.t1.1	Cre14.g611517.t1.1		539328,539037,538397,538146,537544,537295,536941,536401,535866,535566,535174,534589,533639	539624,539083,538477,538176,537789,537353,537002,536539,535897,535608,535244,534862,534290	
chr14	539775	544645	539952	543133	+	TGL22	Cre14.g611552.t1.1		539775,541166,541816,542357,542667,542944	540643,541347,542007,542418,542709,544645	
chr14	544695	553006	545271	552111	+	ALO2	Cre14.g611650.t1.1		544695,545102,545827,545997,546328,546737,547082,547428,547877,548328,548837,549171,549938,550465,550751,551091,551414,551827	544837,545508,545867,546081,546477,546773,547169,547509,548020,548588,548963,549749,550038,550506,550953,551219,551532,553006	D-arabinono-1,4-lactone oxidase/gulonolactone oxidase with FAD cofactor and peptidase S8/S53 activity
chr14	553185	561208	553463	560598	+	PLAP8	Cre14.g611700.t1.1		553185,553834,553990,554286,554650,554896,555153,555919,557485,557808,558738,559191,559514,559847,560206,560550	553598,553893,554078,554427,554748,555015,555737,557301,557607,558368,558890,559334,559600,559900,560337,561208	PAP-fibrillin family protein
chr14	561675	575952	562044	573165	+	Cre14.g611750.t1.1	Cre14.g611750.t1.1		561675,562256,562412,563143,563556,563985,564323,564715,564949,565737,566089,566558,566973,567343,567848,568130,568534,568961,569554,570101,570487,571837,572418,573094	562174,562298,562920,563348,563639,564113,564450,564805,565305,565841,566202,566790,567103,567650,567901,568303,568593,569085,569764,570202,571657,572168,572766,575952	
chr14	576683	580364	578521	580201	-	Cre14.g611800.t1.2	Cre14.g611800.t1.2		580033,578899,576683	580364,579792,578557	
chr14	581565	588293	581589	587519	+	Cre14.g611850.t1.2	Cre14.g611850.t1.2		581565,581772,582059,582515,583867,584492,584844,585395,585958,586444,587141	581682,581970,582168,582622,583934,584576,584944,585672,586218,586559,588293	
chr14	589405	591625	589436	590221	+	Cre14.g611900.t2.1	Cre14.g611900.t2.1		589405,589960,590140	589831,590011,591625	
chr14	589115	591625	589436	590221	+	Cre14.g611900.t1.2	Cre14.g611900.t1.2		589115,589960,590140	589831,590011,591625	
chr14	591719	598304	592833	598025	-	Cre14.g611950.t1.1	Cre14.g611950.t1.1		597878,597176,596460,595868,595602,595160,594357,593917,593339,593002,591719	598304,597652,596576,596050,595664,595327,594542,593971,593651,593152,592860	
chr14	600655	610916	600925	608854	+	Cre14.g612000.t1.2	Cre14.g612000.t1.2		600655,601059,601264,601605,601929,602179,602565,602766,603075,603444,604064,604331,604638,604906,605293,605668,606187,606435,607014,607532,607945,608256,608713	600939,601182,601316,601776,602042,602371,602638,602909,603276,603923,604209,604484,604720,605073,605501,605997,606274,606821,607343,607729,608046,608570,610916	
chr14	614015	624576	614580	621578	+	RWP3	Cre14.g612100.t1.1		614015,614549,615588,618729,620705,621299	614246,614640,618452,620441,620938,624576	putative RWP-RK domain transcription factor [PMID: 15785851]
chr14	624619	633934	626549	633692	-	PAP10	Cre14.g612150.t1.1		633662,633146,632560,632027,631649,631068,630625,630165,629523,629148,628605,624619	633934,633400,632681,632153,631744,631210,630807,630288,629607,629218,628756,628452	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; has orthologs in Chlorophyceae only; related to MUT68, and PAP6; classified as present in organisms with motile ciliae
chr14	634095	656065	634735	654521	+	CYG16	Cre14.g612200.t1.1		634095,634707,636493,636868,637389,637877,638273,638811,639139,639699,640046,640345,640882,641268,642336,642716,643102,643488,643761,644447,645047,645611,645997,646368,647098,647803,649942,650191,650506,654338	634266,635271,636631,636930,637459,638022,638388,638930,639398,639867,640168,640419,640966,641383,642455,642857,643194,643525,643898,644764,645229,645706,646101,646870,647425,649695,650007,650331,654087,656065	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	634095	656065	634735	654521	+	CYG16	Cre14.g612200.t2.1		634095,634707,636493,636868,637389,637877,638273,638811,639139,639699,640046,640345,640882,641268,642336,642716,643102,643488,643761,644447,645047,645611,645997,646368,647098,647803,649942,650191,650509,654338	634266,635271,636631,636930,637459,638022,638388,638930,639398,639867,640168,640419,640966,641383,642455,642857,643194,643525,643898,644764,645229,645706,646101,646870,647425,649695,650007,650331,654087,656065	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	656099	657864	657288	657748	-	Cre14.g612226.t1.1	Cre14.g612226.t1.1		656099	657864	
chr14	658420	662547	658587	661963	+	FAP388	Cre14.g612250.t1.2		658420,658880,659181,660314,660783,661156,661446	658709,658962,659383,660452,660924,661215,662547	Found in Cr and Volvox but not strongly conserved elsewhere
chr14	662549	668805	663840	668558	-	Cre14.g612300.t1.2	Cre14.g612300.t1.2		668528,668313,668032,667797,667539,667387,667213,666736,666568,666404,666119,665830,665391,665263,664895,664469,664176,662549	668805,668368,668086,667912,667589,667405,667264,666929,666641,666435,666229,665903,665466,665311,665107,664631,664289,663951	
chr14	662549	668805	663827	668558	-	Cre14.g612300.t2.1	Cre14.g612300.t2.1		668528,668313,668032,667797,667539,667387,667213,666736,666568,666404,666119,665830,665391,665263,664895,664469,664176,662549	668805,668368,668086,667912,667589,667405,667264,666929,666641,666435,666229,665903,665466,665311,665107,664631,664289,663935	
chr14	669341	673546	669494	673155	+	Cre14.g612350.t1.1	Cre14.g612350.t1.1		669341,669569,669754,670074,670432,670540,670733,670978,671176	669506,669675,670012,670375,670471,670663,670920,671116,673546	
chr14	675441	679424	675477	679135	-	Cre14.g612400.t1.1	Cre14.g612400.t1.1		679033,677563,677291,677108,676737,676102,675441	679424,678795,677478,677215,677046,676632,675996	
chr14	675441	679424	675996	679135	-	Cre14.g612400.t2.1	Cre14.g612400.t2.1		679033,677563,677291,677108,676737,676102,675441	679424,678795,677478,677215,677046,676571,675996	
chr14	675441	679424	675996	679135	-	Cre14.g612400.t3.1	Cre14.g612400.t3.1		679033,677563,677291,676737,676102,675441	679424,678795,677478,677215,676632,675996	
chr14	679693	681055	680492	680793	-	Cre14.g612426.t1.1	Cre14.g612426.t1.1		679693	681055	
chr14	681156	683685	681230	683182	+	PRPL15	Cre14.g612450.t1.2		681156,681330,681588,682141,682489,682844,683038	681236,681497,681714,682286,682623,682858,683685	imported to chloroplast; Chloroplast large ribosomal subunit protein L15
chr14	684196	689705	684262	688469	+	Cre14.g612500.t1.2	Cre14.g612500.t1.2		684196,685138,685575,685978,686289,686556,686868,687358,687863,688168	684767,685262,685730,686036,686355,686636,687038,687450,688008,689705	
chr14	689846	690447	689873	690048	+	Cre14.g612567.t1.1	Cre14.g612567.t1.1		689846	690447	
chr14	690473	728895	691316	728565	-	PHC58	Cre14.g612633.t1.1		728495,727867,727131,726700,726411,725902,725583,724836,724441,723486,723081,722126,721731,719520,707211,704572,699721,694224,693942,693555,693187,692543,691972,691756,690473	728895,727956,727180,726799,726518,725997,725688,725416,724651,724309,723291,722949,721941,721599,719131,707064,704493,699605,694116,693789,693444,692979,692448,691838,691617	
chr14	733010	747385	733672	747072	-	DRC7	Cre14.g612700.t1.2		746977,746729,746215,745888,745633,745314,744969,744716,744346,744031,743568,743155,742858,742436,742024,741643,741174,740789,740382,739976,739641,738805,738435,737748,737243,736788,736303,735765,735458,735045,734745,734190,733010	747385,746815,746319,745972,745701,745484,745072,744830,744429,744164,743773,743261,742953,742600,742131,741759,741299,740905,740465,740095,739757,739361,738501,738155,737437,736925,736454,736011,735544,735170,734843,734252,733918	found in the flagellar proteome; Possible serine/threonine protein kinase or adenylate kinase
chr14	747876	751815	748143	751280	+	FAP197	Cre14.g612750.t1.1		747876,748862,749138,749462,749778,750119	748302,748984,749257,749587,749858,751815	Flagellar Associated Protein, found in the flagellar proteome; weakly Similar to Plectin
chr14	752281	755397	752434	753799	+	Cre14.g612800.t1.2	Cre14.g612800.t1.2		752281,752946,753512,753779	752646,753087,753587,755397	
chr14	755536	761727	755734	761427	+	Cre14.g612850.t1.1	Cre14.g612850.t1.1		755536,756274,756885,757683,758515,759216,760017,760338	756008,756377,757331,758177,758892,759604,760143,761727	
chr14	761776	766303	761916	765265	+	CSB56	Cre14.g612900.t1.2		761776,762145,762836,764916,765142	761968,762710,764797,765026,766303	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr14	766396	782447	766506	780276	+	CYG17	Cre14.g612950.t1.1		766396,767121,767383,768093,768635,769042,769505,770201,771711,773551,774527,775226,776107,776833,777362,777742,778091,778437,778917,779193	766864,767269,767753,768216,768874,769208,769930,771464,773355,774161,774851,775749,776174,777068,777436,777875,778180,778565,778985,782447	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	782696	783347	782854	783035	+	Cre14.g612976.t1.1	Cre14.g612976.t1.1		782696	783347	
chr14	783651	788435	783965	788382	-	Cre14.g613000.t1.1	Cre14.g613000.t1.1		788208,788002,787728,787410,786708,785739,785253,784887,784509,783651	788435,788146,787832,787549,786931,786476,785417,784995,784655,784142	
chr14	788732	797485	789564	797326	-	Cre14.g613050.t1.1	Cre14.g613050.t1.1		797104,796816,796404,796064,795264,794560,792917,792592,791999,791568,791228,790648,790268,789823,788732	797485,796862,796531,796202,795839,794584,793103,792720,792160,791675,791348,790794,790334,789978,789669	
chr14	788732	800825	789564	799422	-	Cre14.g613050.t2.1	Cre14.g613050.t2.1		800323,799651,799376,798642,796816,796404,796064,795264,794560,792917,792592,791999,791568,791228,790648,790268,789823,788732	800825,799722,799458,798706,796862,796531,796202,795839,794584,793103,792720,792160,791675,791348,790794,790334,789978,789669	
chr14	797540	800825	798642	799699	-	Cre14.g613075.t1.1	Cre14.g613075.t1.1		800318,799651,799376,797540	800825,799722,799458,798706	
chr14	801313	817395	802557	817175	-	Cre14.g613100.t1.1	Cre14.g613100.t1.1		816992,816520,815919,815558,814939,814619,814214,813596,813272,812875,812457,811978,811498,811158,810938,810472,809960,809348,809094,807563,807296,806979,806466,806090,805268,804847,804332,803901,803368,802999,801313	817395,816853,816107,815764,815142,814819,814414,813796,813472,813078,812657,812178,811698,811358,810991,810666,810148,809601,809167,807692,807347,807111,806516,806227,805830,805076,804636,804113,803602,803129,802648	
chr14	817840	825055	818203	824584	-	Cre14.g613134.t1.2	Cre14.g613134.t1.2		824480,824185,823618,823080,822525,822208,821649,820515,819777,819057,818641,817840	825055,824230,823809,823169,822596,822323,821737,821042,820019,819181,818723,818483	
chr14	825176	830707	825343	830195	+	Cre14.g613150.t1.1	Cre14.g613150.t1.1		825176,825847,826299,826753,827101,827561,828462,828968,829664	825484,825981,826397,826873,827381,827998,828578,829240,830707	
chr14	831040	835495	831264	835387	-	Cre14.g613200.t1.1	Cre14.g613200.t1.1		834910,834335,833883,833507,833069,832437,831820,831040	835495,834709,833996,833611,833157,832794,831899,831652	
chr14	835666	847217	836627	846664	+	Cre14.g613250.t1.1	Cre14.g613250.t1.1		835666,836070,836441,837899,839328,841399,841823,842547,843880	835777,836105,837639,839180,841227,841521,842395,843596,847217	
chr14	847826	852499	847923	852115	+	Cre14.g613300.t1.2	Cre14.g613300.t1.2		847826,848089,848526,848892,849308,849726,850252,850692,850975,851334,851670	847967,848143,848594,849020,849421,849888,850361,850733,851056,851421,852499	
chr14	852610	856665	853066	856264	-	Cre14.g613350.t1.1	Cre14.g613350.t1.1		856140,855944,855633,855091,854717,854522,854142,853465,852610	856665,856065,855656,855192,854794,854590,854229,853823,853180	
chr14	857405	870930	857851	870722	-	POC16	Cre14.g613400.t1.2		870706,870519,870298,870078,869719,868449,868034,867587,867229,866917,866628,866358,865977,865485,864921,864499,864127,863819,863356,861864,861489,860933,860547,860031,859430,858997,858575,857405	870930,870610,870420,870188,869907,869361,868165,867723,867294,867021,866732,866432,866090,865657,865125,864657,864272,863915,863539,862948,861703,861271,860688,860168,859788,859171,858703,858379	Found in basal body proteome [PMID: 15964273].
chr14	871641	873302	871802	872672	+	Cre14.g613426.t1.1	Cre14.g613426.t1.1		871641,872233,872672	871867,872402,873302	
chr14	873451	878004	873830	877266	+	CGL87	Cre14.g613450.t1.2		873451,874003,874286,875074,875425,876049,876574,876945	873849,874078,874714,875216,875579,876168,876741,878004	
chr14	878051	882162	878289	881923	+	ZXE5	Cre14.g613501.t1.1		878051,878564,878893,879472,880067,880733,881094,881464	878409,878664,879077,879842,880541,880905,881240,882162	
chr14	882251	909782	882467	908877	+	FAP203	Cre14.g613550.t1.2		882251,882922,883388,883790,884235,884724,885083,908877	882759,883049,883483,883887,884385,884815,885123,909782	Flagellar Associated Protein, found in the flagellar proteome; weakly Similar to Heat Shock Protein 70
chr14	909491	913659	910284	912919	+	HSP70H	Cre14.g613600.t1.2		909491,911303,911966,912540,912793	910329,911473,912032,912577,913659	Heat shock protein 70 with possible 2-alkenal reductase activity; described as Flagellar Associated Protein 367
chr14	909861	913659	910284	912919	+	HSP70H	Cre14.g613600.t2.1		909861,911303,911966,912540,912793	910329,911473,912032,912577,913659	Heat shock protein 70 with possible 2-alkenal reductase activity; described as Flagellar Associated Protein 367
chr14	913741	918695	913816	917421	+	Cre14.g613652.t1.1	Cre14.g613652.t1.1		913741,914078,914532,914812,915166,915368,916661,916928,917335	913913,914370,914633,914963,915190,915594,916739,917138,918695	
chr14	920083	926810	921793	926710	-	Cre14.g613700.t1.1	Cre14.g613700.t1.1		925495,924964,924483,924175,920083	926810,925281,924701,924247,923718	
chr14	927249	935240	928535	934869	-	Cre14.g613750.t1.1	Cre14.g613750.t1.1		934716,934113,927249	935240,934530,933721	
chr14	935319	940530	936580	940434	-	Cre14.g613800.t1.1	Cre14.g613800.t1.1		940310,940045,939046,938604,938210,937449,936969,935319	940530,940106,939206,938658,938423,937882,937179,936672	
chr14	941317	957090	943158	956878	-	Cre14.g613850.t1.1	Cre14.g613850.t1.1		956824,956339,955685,955316,954783,953674,952978,952546,952103,951626,951252,950863,947489,947091,946837,945353,944814,943979,943748,941317	957090,956373,955787,955378,954977,953802,953153,952585,952214,951789,951314,950990,947665,947223,946859,945509,944908,944033,943831,943500	
chr14	957201	961982	957549	961034	+	CYCT1	Cre14.g613900.t1.2		957201,958159,958580,959186,959613,960304,960758	957857,958240,958714,959281,959713,960460,961982	homologous to cyclin T; possible role in transcription
chr14	962187	974990	963116	974296	-	Cre14.g613950.t1.2	Cre14.g613950.t1.2		974205,973590,973191,972804,972378,972086,971841,971351,971016,970411,969954,969562,969178,968553,965533,965421,964546,963467,962187	974990,973771,973259,972848,972509,972112,971921,971542,971161,970532,970115,969772,969395,968785,965664,965471,964977,964024,963152	ABC transporter-like, with sulfate-transporting, phosphate-transporting, phosphonate-transporting, polyamine-transporting, quaternary-amine-transporting, taurine-transporting, and xenobiotic-transporting ATPase activity; May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	962187	974990	963116	974296	-	Cre14.g613950.t2.1	Cre14.g613950.t2.1		974205,973590,973191,972804,972378,972086,971841,971351,971016,970411,969954,969562,969178,968553,965533,964546,963467,962187	974990,973771,973259,972848,972509,972112,971921,971542,971161,970532,970115,969772,969395,968785,965664,964977,964024,963152	ABC transporter-like, with sulfate-transporting, phosphate-transporting, phosphonate-transporting, polyamine-transporting, quaternary-amine-transporting, taurine-transporting, and xenobiotic-transporting ATPase activity; May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	975151	978312	975236	977127	+	CGL17	Cre14.g614000.t1.1		975151,975541,975813,976371,976681,977049	975378,975639,976051,976426,976801,978312	
chr14	978315	984320	978350	984161	-	Cre14.g614050.t1.1	Cre14.g614050.t1.1		984134,983890,983702,983475,983045,982657,982171,981633,981325,980974,980439,979933,978945,978519,978315	984320,984069,983803,983579,983167,982749,982344,981788,981366,981090,980597,980085,979687,978750,978362	
chr14	985081	985942	985430	985829	+	Cre14.g614076.t1.1	Cre14.g614076.t1.1		985081,985366,985749	985240,985560,985942	
chr14	985955	990130	986284	989961	-	GTR26	Cre14.g614100.t1.2		989714,989379,988950,988470,988172,987794,987495,987182,986867,986582,985955	990130,989635,989003,988586,988263,987848,987581,987237,986963,986662,986416	dolichyl-diphosphooligosaccharide-protein glycosyltransferase (DDOST) (a glycosyl transferase), also known as oligosaccharyltransferase (EC 2.4.1.119)
chr14	990611	1000804	991222	1000043	+	Cre14.g614151.t1.1	Cre14.g614151.t1.1		990611,991672,992096,993748,994126,994426,994752,995100,995421,995678,996004,996403,996791,997201,998127,998818,999843	991606,991848,993524,993875,994248,994521,994954,995233,995491,995824,996165,996555,997060,997507,998600,999657,1000804	
chr14	1001721	1004892	1001847	1004286	+	Cre14.g614200.t1.2	Cre14.g614200.t1.2		1001721,1002479,1002761,1003394,1003697,1004286	1002037,1002502,1003245,1003555,1003987,1004892	
chr14	1004941	1005844	1004970	1005229	+	Cre14.g614226.t1.1	Cre14.g614226.t1.1		1004941	1005844	
chr14	1006121	1008822	1006315	1007788	+	Cre14.g614250.t1.2	Cre14.g614250.t1.2		1006121,1006504,1006964,1007278,1007770	1006407,1006600,1007022,1007356,1008822	
chr14	1008830	1014185	1009725	1013733	-	Cre14.g614300.t1.2	Cre14.g614300.t1.2		1013699,1013519,1013173,1012814,1012280,1011637,1011086,1010455,1010079,1008830	1014185,1013613,1013430,1012969,1012354,1011852,1011238,1010769,1010162,1009863	
chr14	1014236	1016745	1015090	1016599	-	Cre14.g614350.t1.2	Cre14.g614350.t1.2		1016493,1016352,1016202,1015582,1015298,1014236	1016745,1016379,1016286,1015656,1015389,1015130	
chr14	1017066	1032137	1017114	1031409	+	Cre14.g614400.t1.1	Cre14.g614400.t1.1		1017066,1017335,1017636,1017984,1018619,1018858,1019174,1019777,1020320,1020668,1021420,1022898,1023359,1023850,1024402,1025774,1026220,1026586,1026923,1027355,1027782,1028131,1028464,1029459,1030066,1030493,1031232	1017177,1017397,1017680,1018027,1018685,1018897,1019428,1019826,1020367,1020789,1022209,1023059,1023459,1023901,1024476,1025818,1026317,1026688,1027093,1027437,1027914,1028299,1028606,1029560,1030104,1030546,1032137	SNF2-related helicase.  ChromoDB CHR3418
chr14	1032140	1039635	1032549	1039224	-	Cre14.g614450.t1.1	Cre14.g614450.t1.1		1039393,1039185,1039012,1038774,1038395,1038158,1037861,1037391,1036649,1036165,1035672,1035260,1034710,1034199,1033818,1032873,1032140	1039635,1039283,1039064,1038886,1038490,1038192,1037966,1037494,1037086,1036401,1035903,1035483,1035003,1034456,1034060,1033604,1032642	Has homologs only in Chlorophyceae
chr14	1039710	1043135	1040712	1042932	-	Cre14.g614500.t1.1	Cre14.g614500.t1.1		1042884,1039710	1043135,1042725	
chr14	1043909	1051035	1044528	1050866	-	MDB1	Cre14.g614550.t1.1		1050771,1050607,1049571,1049158,1048703,1048200,1047655,1046638,1046110,1045386,1043909	1051035,1050664,1050368,1049219,1048907,1048283,1047798,1047396,1046187,1045871,1045173	OctotricoPeptide Repeat (OPR) Protein; stabilizes atpB mRNA
chr14	1051145	1054235	1051450	1053198	+	Cre14.g614600.t1.2	Cre14.g614600.t1.2		1051145,1051601,1052302,1053090	1051469,1051998,1052397,1054235	
chr14	1054340	1056575	1055510	1056475	-	Cre14.g614650.t1.2	Cre14.g614650.t1.2		1056334,1054340	1056575,1055798	
chr14	1056756	1057207	1056935	1057143	+	Cre14.g614667.t1.2	Cre14.g614667.t1.2		1056756	1057207	
chr14	1057256	1059327	1057435	1057831	+	Cre14.g614708.t1.1	Cre14.g614708.t1.1		1057256,1057742	1057568,1059327	
chr14	1061589	1064805	1062036	1064565	-	Cre14.g614750.t1.1	Cre14.g614750.t1.1		1064556,1063755,1063464,1063039,1062557,1061589	1064805,1064414,1063583,1063134,1062712,1062192	Related to GCN5
chr14	1065090	1066415	1065218	1065531	+	Cre14.g614800.t1.2	Cre14.g614800.t1.2		1065090	1066415	
chr14	1066458	1085545	1067959	1085397	-	FAP33	Cre14.g614850.t1.1		1085279,1085105,1084390,1084118,1083761,1083360,1083147,1082779,1082417,1082116,1081583,1080325,1079799,1079437,1079125,1078866,1078366,1077947,1076084,1075833,1075351,1074928,1073887,1073557,1073205,1072919,1072590,1072237,1071749,1071476,1071199,1070721,1070392,1069998,1069740,1069539,1069125,1068766,1068276,1066458	1085545,1085200,1084532,1084163,1083966,1083453,1083208,1082917,1082522,1082179,1081711,1080426,1079918,1079505,1079271,1078946,1078597,1078128,1077616,1075931,1075519,1075081,1074103,1073691,1073299,1072997,1072723,1072330,1071855,1071527,1071334,1070878,1070453,1070120,1069824,1069592,1069262,1068973,1068388,1068052	Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome as FAP33.  Phosphorylation characterized by Boesger et al. (29) [PMID: 19429781]
chr14	1085670	1098637	1086785	1098525	-	TSQ1	Cre14.g614900.t1.2		1098448,1098237,1097563,1097024,1096413,1096327,1095633,1095128,1094618,1094410,1094038,1093476,1092985,1092622,1092127,1091840,1091374,1090972,1090371,1090015,1089558,1089105,1088551,1088041,1087566,1085670	1098637,1098354,1097628,1097065,1096472,1096350,1095706,1095215,1094719,1094436,1094163,1093624,1093050,1092733,1092278,1091914,1091497,1091116,1090456,1090095,1089695,1089154,1088668,1088102,1087695,1086914	
chr14	1085670	1098637	1086785	1098525	-	TSQ1	Cre14.g614900.t2.1		1098448,1098237,1097563,1097024,1096413,1095633,1095128,1094618,1094410,1094038,1093476,1092985,1092622,1092127,1091840,1091374,1090972,1090371,1090015,1089558,1089105,1088551,1088041,1087566,1085670	1098637,1098354,1097628,1097065,1096472,1095706,1095215,1094719,1094436,1094163,1093624,1093050,1092733,1092278,1091914,1091497,1091116,1090456,1090095,1089695,1089154,1088668,1088102,1087695,1086914	
chr14	1099236	1102659	1099498	1102375	+	MRPS2	Cre14.g614950.t1.2		1099236,1099618,1099916,1100737,1101272,1101781	1099532,1099733,1100362,1100937,1101472,1102659	
chr14	1102705	1104985	1103042	1104929	-	Cre14.g615000.t1.1	Cre14.g615000.t1.1		1104758,1104405,1104069,1103461,1102705	1104985,1104470,1104112,1103620,1103114	
chr14	1105083	1108432	1105171	1108119	+	Cre14.g615050.t1.2	Cre14.g615050.t1.2		1105083,1105327,1105820,1106362,1106825,1107265,1108050	1105234,1105518,1105917,1106466,1106998,1107490,1108432	
chr14	1108526	1111249	1108979	1110537	+	MSR1	Cre14.g615100.t1.2		1108526,1108885,1109421,1109830,1110041,1110459	1108751,1109054,1109486,1109873,1110200,1111249	
chr14	1111280	1116645	1111379	1116535	-	Cre14.g615150.t1.1	Cre14.g615150.t1.1		1115748,1115123,1114656,1114226,1113736,1113349,1112676,1112213,1111280	1116645,1115499,1114820,1114415,1113909,1113431,1113065,1112335,1111781	
chr14	1116756	1119287	1116866	1118486	+	Cre14.g615200.t1.1	Cre14.g615200.t1.1		1116756,1117132,1117309,1117707,1118126,1118387	1116936,1117202,1117485,1117865,1118200,1119287	
chr14	1119291	1120645	1119473	1120279	-	Cre14.g615224.t1.2	Cre14.g615224.t1.2		1120174,1119896,1119291	1120645,1119976,1119719	
chr14	1119291	1120535	1119473	1120279	-	Cre14.g615224.t2.1	Cre14.g615224.t2.1		1120174,1119896,1119291	1120535,1119976,1119719	
chr14	1119291	1120645	1119649	1120279	-	Cre14.g615224.t3.1	Cre14.g615224.t3.1		1120174,1119896,1119291	1120645,1119976,1119754	
chr14	1120700	1121625	1120724	1121463	-	TRX18	Cre14.g615250.t2.1		1121289,1121011,1120700	1121625,1121065,1120816	thioredoxin-like protein in cyanobacteria and Arabidopsis - cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA is found only in oxygenic photosynthetic organisms. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport
chr14	1120590	1121625	1120724	1121463	-	TRX18	Cre14.g615250.t1.1		1121289,1121011,1120590	1121625,1121065,1120816	thioredoxin-like protein in cyanobacteria and Arabidopsis - cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA is found only in oxygenic photosynthetic organisms. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport
chr14	1121791	1123845	1122564	1123105	-	Cre14.g615300.t1.2	Cre14.g615300.t1.2		1121791	1123845	
chr14	1125856	1128338	1126228	1127392	+	THB2	Cre14.g615350.t1.2		1125856,1126777,1127246	1126441,1126861,1128338	Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryotes (Paramecium, Tetrahymena); the C. eugametos orthologue has been localized to the plastid, particularly in the pyrenoid and the thylakoid region; this C. reinhardtii protein has been identified in a thylakoid enriched fraction [PMID: 17078018]; there are two pairs of related and linked genes in this family, this one belongs to the pair on Chr_14
chr14	1130388	1132606	1130467	1131681	+	THB1	Cre14.g615400.t1.2		1130388,1130838,1131177,1131597	1130629,1130939,1131239,1132606	Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryotes (Paramecium, Tetrahymena); the C. eugametos orthologue has been localized to the plastid, particularly in the pyrenoid and the thylakoid region; this C. reinhardtii protein has been identified in a thylakoid enriched fraction [PMID: 17078018]; there are two pairs of related and linked genes in this family, this one belongs to the pair on Chr_14
chr14	1132610	1138055	1132931	1137889	-	Cre14.g615450.t1.2	Cre14.g615450.t1.2		1137855,1137325,1137084,1136571,1136084,1135704,1135185,1134477,1132610	1138055,1137682,1137162,1136831,1136164,1135775,1135331,1134758,1134080	
chr14	1138176	1143477	1138354	1143460	+	Cre14.g615500.t1.1	Cre14.g615500.t1.1		1138176,1138688,1139436,1139787,1140974,1141537,1141949,1142945	1138436,1139134,1139584,1140438,1141079,1141672,1142123,1143477	
chr14	1143530	1148425	1144763	1148286	-	TGL19	Cre14.g615550.t1.1		1148144,1147558,1147081,1146619,1146344,1146030,1145813,1145733,1145542,1145221,1145060,1143530	1148425,1147777,1147155,1146764,1146444,1146121,1145945,1145754,1145594,1145332,1145136,1144877	
chr14	1148480	1152285	1149225	1152130	-	Cre14.g615600.t1.2	Cre14.g615600.t1.2		1152108,1151771,1151464,1151022,1149651,1148480	1152285,1151902,1151576,1151151,1150645,1149369	
chr14	1152386	1153431	1152793	1153220	+	Cre14.g615618.t1.1	Cre14.g615618.t1.1		1152386,1153017	1152854,1153431	
chr14	1153746	1155117	1154060	1154721	+	Cre14.g615634.t1.2	Cre14.g615634.t1.2		1153746,1154107,1154233,1154429,1154630	1154065,1154170,1154305,1154480,1155117	
chr14	1155971	1158608	1156213	1158405	-	Cre14.g615650.t1.2	Cre14.g615650.t1.2		1158218,1157941,1157727,1157178,1156711,1155971	1158608,1157995,1157793,1157372,1156935,1156438	
chr14	1158983	1165108	1160018	1164683	-	Cre14.g615700.t1.1	Cre14.g615700.t1.1		1164401,1162425,1161766,1161134,1160652,1160325,1158983	1165108,1164136,1162184,1161621,1160822,1160407,1160160	
chr14	1165287	1168309	1165539	1167495	+	CAM2	Cre14.g615750.t1.1		1165287,1166044,1166610,1166816,1167158,1167450	1165663,1166075,1166689,1166939,1167304,1168309	Possible regulator of calmodulin expression; this an alternatively spliced form of CAM2 (Chlre2_kg.scaffold_4300008); if upstream AUG is used, generates a different protein in another reading frame, with no database homology; could be involved in CAM2 regulation ?
chr14	1168373	1169468	1168953	1169427	-	Cre14.g615776.t1.1	Cre14.g615776.t1.1		1169420,1169139,1168373	1169468,1169339,1168970	
chr14	1169523	1178798	1170421	1178586	-	Cre14.g615800.t1.2	Cre14.g615800.t1.2		1178274,1178044,1177583,1177296,1176781,1176361,1175921,1175345,1175047,1174592,1173930,1173305,1172699,1170975,1169523	1178798,1178113,1177832,1177374,1176939,1176519,1176025,1175410,1175175,1174759,1174310,1173467,1173066,1171100,1170613	
chr14	1178959	1181840	1179269	1180713	+	EFH8	Cre14.g615850.t1.1		1178959,1179658,1180052,1180354,1180668	1179473,1179824,1180190,1180500,1181840	
chr14	1178959	1181840	1179468	1180713	+	EFH8	Cre14.g615850.t2.1		1178959,1179618,1180052,1180354,1180668	1179473,1179824,1180190,1180500,1181840	
chr14	1181889	1187713	1181981	1187239	+	FBT3	Cre14.g615900.t1.1		1181889,1182272,1182622,1182822,1183390,1183766,1184958,1185300,1185590,1186324,1186883	1182177,1182357,1182681,1183049,1183493,1184693,1185039,1185385,1185673,1186462,1187713	belongs to BT1-family of transporters (also known as FBT) involved in folate/pteridine transport (PMID: 16162503); most closely related to the chloroplast folate transporter At2g32040
chr14	1187785	1199102	1188550	1198639	-	Cre14.g615950.t1.1	Cre14.g615950.t1.1		1198955,1198264,1197982,1197148,1196618,1196094,1195621,1195055,1194553,1193856,1193560,1193048,1192674,1192147,1191051,1190733,1190414,1189997,1189584,1189162,1187785	1199102,1198663,1198047,1197252,1196830,1196291,1195782,1195345,1194724,1194001,1193650,1193173,1192831,1192221,1191173,1190820,1190475,1190146,1189750,1189297,1188868	
chr14	1199239	1203090	1199500	1202712	+	Cre14.g616000.t1.1	Cre14.g616000.t1.1		1199239,1199791,1199925,1200215,1200538,1200776,1201083,1201267,1201589,1201979,1202712	1199581,1199814,1199972,1200328,1200617,1200790,1201146,1201299,1201675,1202157,1203090	
chr14	1203100	1209488	1204267	1209189	-	Cre14.g616050.t1.1	Cre14.g616050.t1.1		1209138,1208969,1208795,1208197,1207782,1204537,1203100	1209488,1209023,1208838,1208409,1207858,1207556,1204290	
chr14	1209649	1215890	1209763	1214922	+	FKB53	Cre14.g616100.t1.1		1209649,1209968,1210462,1211504,1212058,1212427,1213149,1213864,1214456,1214769	1209850,1210108,1210527,1211704,1212162,1212602,1213320,1213920,1214560,1215890	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin) with an N-terminal nucleoplasmin domain (found in chromatin decondensation proteins that bind to core histones and transfer DNA to them in a reaction that requires ATP); similar to At4g25340 (FKBP53), except that N-terminal domain is rich in acidic residues [PMID: 15701785]
chr14	1215939	1219240	1216468	1218971	+	Cre14.g616151.t1.1	Cre14.g616151.t1.1		1215939,1216441,1218242	1216140,1217032,1219240	
chr14	1219243	1223058	1220129	1222878	-	PIGM	Cre14.g616200.t1.2		1222635,1221392,1220902,1219243	1223058,1222291,1221096,1220501	
chr14	1224399	1228520	1224511	1227579	+	CPL9	Cre14.g616250.t1.2		1224399,1224667,1224810,1225254,1225826,1226444,1226961,1227468	1224571,1224712,1224897,1225353,1225976,1226498,1227021,1228520	Putative polyketide cyclase/dehydrase; some similarity to predicted proteins of in plants and cyanobacteria. COG5637; previously annotated as CPL9 (which was a predicted membrane protein)
chr14	1228569	1233480	1228597	1232794	+	Cre14.g616301.t1.1	Cre14.g616301.t1.1		1228569,1231338,1231591,1231900,1232527	1231147,1231439,1231673,1232200,1233480	
chr14	1233559	1237900	1233599	1237859	+	FAS4	Cre14.g616350.t1.2		1233559,1234110,1234477,1235177,1235777,1236142,1236413,1236882,1237127,1237569,1237802	1233627,1234305,1234662,1235281,1235879,1236261,1236573,1237026,1237294,1237661,1237900	protein contains the fasciclin FAS1 domain (= BIgH3 domain), which is an extracellular module of about 140 amino acid residues; it has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals
chr14	1237979	1239780	1238460	1239070	+	Cre14.g616376.t1.1	Cre14.g616376.t1.1		1237979,1238439,1238892	1238207,1238582,1239780	
chr14	1240013	1244738	1240383	1244392	-	Cre14.g616400.t1.2	Cre14.g616400.t1.2		1244725,1242688,1242224,1241441,1240900,1240013	1244738,1244420,1242307,1241541,1241170,1240758	
chr14	1248489	1255844	1248537	1253900	+	CYG46	Cre14.g616450.t1.1		1248489,1248980,1249271,1249653,1249824,1250382,1250548,1250779,1251323,1251592,1251906,1252334,1252638,1253004	1248637,1249045,1249368,1249706,1250191,1250424,1250583,1251147,1251425,1251653,1252077,1252398,1252779,1255844	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	1255854	1262608	1256875	1262421	-	Cre14.g616501.t1.1	Cre14.g616501.t1.1		1260545,1259002,1258493,1255854	1262608,1260347,1258602,1256921	
chr14	1262751	1272038	1264432	1271978	-	CYG50	Cre14.g616550.t1.1		1271690,1270591,1270212,1269885,1269541,1269059,1268834,1268672,1268109,1267831,1267625,1267203,1266882,1266501,1262751	1272038,1270720,1270277,1269982,1269594,1269423,1268876,1268707,1268477,1267933,1267686,1267374,1266946,1266642,1266273	Domain similar to guanylyl cyclase long variant [Drosophila melanogaster].  Rhodopsin-like
chr14	1272091	1274276	1272653	1273612	-	Cre14.g616589.t1.2	Cre14.g616589.t1.2		1274186,1273882,1273033,1272091	1274276,1274070,1273767,1272827	
chr14	1274369	1283459	1274526	1282782	+	FZL	Cre14.g616600.t1.2		1274369,1275320,1275553,1275999,1276892,1277183,1277543,1277867,1278227,1278628,1278844,1279218,1279548,1279779,1280206,1280503,1280838,1281341,1281659,1282037,1282626	1275070,1275438,1275771,1276352,1276939,1277265,1277636,1277929,1278361,1278666,1278966,1279340,1279641,1279885,1280310,1280615,1280937,1281509,1281843,1282213,1283459	
chr14	1283463	1292118	1284291	1291789	-	Cre14.g616650.t1.2	Cre14.g616650.t1.2		1291707,1291151,1290891,1290364,1290020,1289582,1289289,1288758,1288429,1287988,1287678,1287373,1286841,1286494,1285571,1283463	1292118,1291423,1291017,1290670,1290254,1289842,1289430,1289058,1288645,1288292,1287849,1287413,1286946,1286591,1286304,1284291	
chr14	1292200	1299358	1293321	1299164	-	Cre14.g616700.t1.1	Cre14.g616700.t1.1		1299064,1298366,1298011,1297397,1296954,1296546,1296252,1295704,1295371,1294940,1294645,1294363,1294060,1293675,1292200	1299358,1298635,1298137,1297694,1297188,1296800,1296396,1296004,1295587,1295244,1294816,1294403,1294165,1293772,1293546	
chr14	1299563	1308298	1300493	1308056	-	PEX5	Cre14.g616750.t1.1		1307918,1307570,1307194,1306796,1306480,1306215,1305762,1305393,1305038,1304734,1304482,1304067,1303654,1303383,1302960,1302566,1302254,1301935,1301344,1300979,1299563	1308298,1307695,1307310,1306897,1306590,1306292,1305985,1305627,1305190,1304856,1304568,1304132,1303841,1303425,1303037,1302703,1302322,1302083,1301416,1301087,1300627	peroxisomal targeting signal 1 receptor Pex5; binds the PTS1 targeting signal SKL-COOH between its two TRP domains [PMID: 9789089]
chr14	1308479	1312310	1308642	1311884	+	Cre14.g616800.t1.2	Cre14.g616800.t1.2		1308479,1309026,1309201,1309643,1309990,1310330,1310531,1311140,1311419	1308812,1309045,1309298,1309750,1310106,1310381,1310580,1311205,1312310	
chr14	1312359	1313260	1312392	1313167	+	Cre14.g616826.t1.1	Cre14.g616826.t1.1		1312359	1313260	
chr14	1314919	1320653	1315085	1319998	+	Cre14.g616850.t1.1	Cre14.g616850.t1.1		1314919,1315326,1315667,1316380,1316714,1317065,1317409,1317606,1318420,1318979,1319683,1319898	1315130,1315373,1316192,1316463,1316874,1317205,1317472,1318207,1318735,1319139,1319741,1320653	
chr14	1320784	1325538	1321511	1325266	-	SULP2	Cre14.g616900.t1.2		1325233,1325057,1324626,1323638,1323137,1322584,1322230,1321841,1320784	1325538,1325149,1324688,1323739,1323281,1322708,1322338,1321896,1321628	transmembrane component of chloroplast sulfate-transporting ABC transporter [GI:42559329]; homologous to SulP1
chr14	1325659	1328910	1326109	1327610	+	SELT	Cre14.g616950.t1.1		1325659,1326060,1326335,1326831,1327050,1327266,1327511	1325846,1326153,1326533,1326890,1327070,1327328,1328910	Model is truncated at N-terminus due to UGA Sec codon; add sequence MQGLHKGAILLGIVALFIGADCFGVMGGSKAPSQARVQSAMDPDGGLSLGGKLHVSFCNSUG, with Selenocysteine in position 61; SECIS element in 3'-UTR; conserved in plants and animals (Sec replaced by Cys in plants)
chr14	1329003	1333558	1329465	1333481	-	Cre14.g616976.t1.1	Cre14.g616976.t1.1		1333472,1332547,1331704,1331013,1330006,1329003	1333558,1333020,1332161,1331433,1330848,1329630	
chr14	1333763	1341408	1334113	1341371	-	Cre14.g617002.t1.1	Cre14.g617002.t1.1		1341149,1340462,1340116,1339782,1337876,1337511,1337195,1336352,1335661,1334854,1334654,1333763	1341408,1340591,1340215,1339884,1339426,1337667,1337439,1336809,1336081,1335496,1334781,1334278	
chr14	1341569	1342606	1341631	1341869	+	Cre14.g617027.t1.1	Cre14.g617027.t1.1		1341569	1342606	
chr14	1342734	1355368	1343371	1355268	-	Cre14.g617050.t1.1	Cre14.g617050.t1.1		1355193,1354720,1354418,1354121,1353796,1353485,1353040,1351646,1351288,1350404,1349766,1349426,1349094,1347123,1346435,1345593,1344896,1343912,1342734	1355368,1354797,1354496,1354239,1353898,1353579,1353260,1352753,1351416,1350988,1349895,1349525,1349196,1348727,1346911,1346050,1345319,1344754,1343536	
chr14	1355499	1357606	1355602	1357043	+	SRS9	Cre14.g617100.t1.2		1355499,1355867,1356509,1356838	1355673,1355947,1356655,1357606	Putative SR (serine/arginine rich) splicing factor
chr14	1357779	1362330	1357865	1361567	+	RLS4	Cre14.g617150.t1.1		1357779,1357996,1358362,1358575,1358819,1359160,1359606,1359959,1360352,1360655,1361023,1361390	1357922,1358199,1358428,1358661,1358912,1359478,1359770,1360180,1360453,1360846,1361190,1362330	Member of a family of proteins [PMID: 1672695, 1662271] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR77 SAND; PF1342).
chr14	1362379	1370857	1363276	1368194	+	Cre14.g617151.t1.2	Cre14.g617151.t1.2		1362379,1362896,1364627,1364959,1367583	1362753,1364475,1364741,1367314,1370857	
chr14	1370928	1378538	1372316	1377375	-	RLS7	Cre14.g617200.t1.1		1377787,1376323,1375950,1370928	1378538,1377419,1376064,1375670	Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342).
chr14	1379178	1381402	1379329	1380801	+	FAP282	Cre14.g617250.t1.2		1379178,1379528,1379719,1379905,1380261,1380636	1379419,1379560,1379790,1380039,1380329,1381402	Flagellar Associated coiled-coil Protein, found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr14	1381449	1383544	1381502	1382830	+	Cre14.g617276.t1.1	Cre14.g617276.t1.1		1381449,1382566	1381517,1383544	
chr14	1385103	1391258	1386378	1391153	-	PSL3	Cre14.g617300.t1.2		1391002,1390653,1390255,1389980,1389702,1389431,1389179,1388674,1388394,1388004,1387496,1386830,1385103	1391258,1390790,1390335,1390059,1389785,1389505,1389265,1388808,1388483,1388191,1387601,1387327,1386558	contains YD and GxGD motifs typical of typical of A22 family aspartic proteases, presenilins/signal peptide peptidases; belongs to SPP type, cleaving only type II transmembrane helices (C-terminus towards cytosol); probably involved in clearance of signal peptides and in signaling; contains a long insertion after the GxGD helix; possibly directed to mitochondrion, like ostreococcus ortholog; has no Arabidopsis ortholog
chr14	1391369	1396610	1391485	1395540	+	Cre14.g617350.t1.1	Cre14.g617350.t1.1		1391369,1391802,1392037,1392416,1392914,1393291,1393778,1394132,1394445,1394725,1395058	1391583,1391847,1392207,1392625,1393050,1393577,1393959,1394248,1394580,1394862,1396610	
chr14	1396617	1398388	1397127	1398100	-	HSP22F	Cre14.g617400.t1.2		1397775,1396617	1398388,1397528	small heat shock protein containing an alpha-crystallin domain; N-terminus by TargetP weakly predicted to be chloroplast transit peptide; HSP22F and HSP22E are arranged head-to-head and share 98% identical nucleotide sequence in coding region (96% identical amino acid residues). 5' UTR sequence is 85% identical; 3' UTR have no significant homology; PMID: 16143837
chr14	1398588	1400061	1398715	1399689	+	HSP22E	Cre14.g617450.t1.2		1398588,1399288	1399040,1400061	small heat shock protein containing an alpha-crystallin domain; N-terminus by TargetP weakly predicted to be chloroplast transit peptide; HSP22E and HSP22F are arranged head-to-head and share 98% identical nucleotide sequence in coding region (96% identical amino acid residues). 5' UTR sequences are 85% identical; 3' UTRs have no significant homology; PMID: 16143837
chr14	1400063	1403478	1400370	1403250	-	RSP14	Cre14.g617500.t1.2		1403121,1402815,1402607,1402353,1401708,1401496,1401283,1400836,1400063	1403478,1402952,1402672,1402424,1401896,1401562,1401383,1401096,1400511	An Armadillo repeat protein in radial spoke stalk [PMID: 16507594]; Found in the flagellar proteome as FAP132 [PMID: 15998802]
chr14	1403594	1405257	1403759	1404315	+	DLE3	Cre14.g617550.t1.2		1403594	1405257	DC3 component of outer arm docking complex; Calmodulin homolog;  Mr 25000
chr14	1405319	1411532	1405377	1410798	+	DEG9	Cre14.g617600.t1.2		1405319,1405917,1406359,1406776,1407130,1407454,1407648,1407948,1408283,1408611,1409038,1409294,1409575,1409890,1410260,1410591	1405632,1406022,1406483,1406856,1407222,1407487,1407755,1407998,1408461,1408731,1409141,1409412,1409689,1409945,1410365,1411532	DegP-type protease, stromal surface; most similar to Arabidopsis DegP2 and DegP9
chr14	1411719	1420958	1411976	1419726	+	PDE1	Cre14.g617650.t1.1		1411719,1412215,1412513,1412858,1413099,1413530,1413892,1414285,1414546,1414738,1415090,1417614,1418075,1418377,1418905,1419264,1419677	1412015,1412352,1412662,1412933,1413369,1413718,1414095,1414391,1414592,1414851,1417486,1417771,1418234,1418753,1419129,1419461,1420958	Ca+-calmodulin dependent 3',5'-cyclic-nucleotide phosphodiesterase similar to that from Mus musculus: PDE1B_mouse. Adjacent to PDE2 and PDE3
chr14	1421109	1430880	1422589	1429776	+	PDE2	Cre14.g617700.t1.1		1421109,1421779,1422143,1422435,1422586,1423208,1423727,1424113,1424327,1424554,1424842,1425357,1425805,1426320,1426547,1426897,1427691,1427967,1428269,1428892,1429269,1429494	1421333,1421862,1422190,1422481,1422634,1423279,1423960,1424148,1424410,1424624,1424962,1425478,1425908,1426366,1426660,1427475,1427848,1428126,1428795,1429089,1429299,1430880	Ca+-calmodulin dependent 3',5'-cyclic-nucleotide phosphodiesterase similar to that from Mus musculus: PDE1B_mouse. Adjacent to PDE2 and PDE3
chr14	1431059	1441404	1431397	1440162	+	PDE3	Cre14.g617750.t1.1		1431059,1431805,1432036,1432283,1432553,1433036,1433495,1433679,1433897,1434204,1434503,1434791,1435085,1435283,1435607,1438319,1438546,1438831,1439310,1439575,1439915	1431460,1431888,1432083,1432320,1432673,1433263,1433529,1433763,1434024,1434258,1434624,1434912,1435131,1435396,1438093,1438476,1438705,1439207,1439477,1439772,1441404	Ca+-calmodulin dependent 3',5'-cyclic-nucleotide phosphodiesterase similar to that from Mus musculus: PDE1B_mouse. Adjacent to PDE2 and PDE3
chr14	1441413	1447218	1441913	1446421	-	Cre14.g617800.t1.1	Cre14.g617800.t1.1		1446949,1446770,1446301,1445740,1445432,1444926,1444619,1444347,1444083,1443609,1443261,1442853,1442400,1441413	1447218,1446842,1446453,1445873,1445481,1445124,1444646,1444415,1444143,1443826,1443379,1443008,1442529,1442228	
chr14	1447319	1449559	1447423	1449187	+	Cre14.g617826.t1.1	Cre14.g617826.t1.1		1447319,1447585,1447737,1447966,1448812,1449169	1447486,1447644,1447841,1448273,1448917,1449559	
chr14	1449609	1453080	1449970	1452520	+	Cre14.g617850.t1.1	Cre14.g617850.t1.1		1449609,1450303,1450616,1451235,1451541	1450183,1450452,1451077,1451401,1453080	
chr14	1453449	1456605	1453738	1456510	+	RPL35	Cre14.g617900.t1.2		1453449,1454046,1454394,1455888,1456435	1453742,1454146,1454537,1455956,1456605	Cytosolic 60S large ribosomal subunit protein L35
chr14	1456663	1460638	1457794	1460543	-	CAM18	Cre14.g617950.t1.1		1460416,1459734,1459354,1459018,1458871,1458590,1458120,1456663	1460638,1459900,1459442,1459097,1458887,1458658,1458208,1457843	
chr14	1460693	1464958	1461714	1464919	-	EFH9	Cre14.g618000.t1.2		1464813,1464580,1464202,1463795,1463388,1462869,1462027,1460693	1464958,1464677,1464293,1463891,1463489,1462960,1462662,1461823	
chr14	1465099	1467333	1465147	1466534	+	PLAP3	Cre14.g618050.t1.2		1465099,1465620,1465902,1466431	1465350,1465740,1466158,1467333	PAP-fibrillin family protein
chr14	1467803	1474958	1468718	1474430	-	Cre14.g618100.t1.1	Cre14.g618100.t1.1		1474289,1473329,1472995,1472613,1472079,1471637,1471149,1470819,1470368,1469676,1469395,1469063,1467803	1474958,1474062,1473122,1472727,1472179,1471715,1471228,1470902,1470468,1469834,1469477,1469141,1468781	
chr14	1475011	1481218	1475647	1480956	-	Cre14.g618150.t1.2	Cre14.g618150.t1.2		1480944,1480776,1480577,1480311,1480097,1479783,1479479,1479019,1478482,1478185,1477895,1477496,1476187,1475011	1481218,1480855,1480669,1480373,1480145,1479899,1479604,1479129,1478607,1478319,1477970,1477629,1477212,1476007	
chr14	1481776	1487378	1483157	1487363	-	Cre14.g618200.t1.1	Cre14.g618200.t1.1		1487128,1486914,1486267,1485890,1485401,1485118,1484704,1483780,1483561,1481776	1487378,1487014,1486394,1486028,1485502,1485213,1484832,1484358,1483645,1483279	
chr14	1487433	1490418	1487623	1490310	-	Cre14.g618250.t1.1	Cre14.g618250.t1.1		1490171,1489290,1488951,1488487,1488184,1487433	1490418,1490089,1489135,1488838,1488320,1487852	
chr14	1490569	1494739	1490857	1494571	+	Cre14.g618300.t1.1	Cre14.g618300.t1.1		1490569,1491068,1491592,1491980,1492501,1493040,1493386,1493638,1494076	1490928,1491410,1491696,1492045,1492563,1493110,1493449,1493724,1494739	
chr14	1494790	1498530	1494823	1498053	+	Cre14.g618350.t1.1	Cre14.g618350.t1.1		1494790,1496695,1497462	1496501,1497176,1498530	
chr14	1498536	1509138	1499376	1508867	-	Cre14.g618400.t1.2	Cre14.g618400.t1.2		1508861,1508264,1507549,1507015,1506705,1506315,1505919,1505408,1504982,1504654,1504179,1503725,1503559,1503154,1502689,1502290,1501907,1501433,1501036,1500580,1500081,1499662,1498536	1509138,1508437,1507959,1507159,1506787,1506371,1505996,1505595,1505101,1504782,1504267,1503876,1503626,1503319,1502884,1502420,1501979,1501633,1501193,1500648,1500213,1499852,1499463	
chr14	1513343	1518970	1513596	1517486	+	Cre14.g618450.t1.2	Cre14.g618450.t1.2		1513343,1513704,1514059,1514293,1514691,1514859,1515276,1515667,1515900,1516250,1516561	1513616,1513766,1514100,1514467,1514735,1515090,1515436,1515750,1516057,1516327,1518970	
chr14	1519093	1524774	1519646	1522595	+	Cre14.g618500.t1.1	Cre14.g618500.t1.1		1519093,1519613,1520837,1521682	1519425,1519916,1521513,1524774	
chr14	1524797	1530742	1525204	1530345	-	Cre14.g618550.t1.2	Cre14.g618550.t1.2		1530150,1529855,1529345,1529062,1528617,1528384,1527927,1527411,1526926,1525862,1524797	1530742,1529954,1529504,1529106,1528758,1528456,1528033,1527516,1527113,1526603,1525650	
chr14	1531283	1547747	1531407	1545663	+	MRP7	Cre14.g618600.t1.2		1531283,1531894,1532293,1532989,1533979,1534490,1534802,1535258,1535691,1536075,1536829,1537380,1538475,1538942,1539282,1540084,1540394,1542670,1543023,1543623,1544599	1531668,1531983,1532643,1533603,1534089,1534579,1534878,1535412,1535786,1536364,1537125,1538243,1538609,1539033,1539531,1540166,1542415,1542825,1543216,1544321,1547747	Related to AtMRP11, putative ABC transporter, MRP subfamilymembrane protein [PMID: 1571683]
chr14	1531283	1547747	1531407	1546776	+	MRP7	Cre14.g618600.t2.1		1531283,1531894,1532293,1532989,1533979,1534490,1534802,1535258,1535691,1536075,1536829,1537380,1538475,1538942,1539282,1540084,1540394,1542670,1543023,1543623,1544599,1546776	1531668,1531983,1532643,1533603,1534089,1534579,1534878,1535412,1535786,1536364,1537125,1538243,1538609,1539033,1539531,1540166,1542415,1542825,1543216,1544321,1545666,1547747	Related to AtMRP11, putative ABC transporter, MRP subfamilymembrane protein [PMID: 1571683]
chr14	1531283	1547747	1531407	1546776	+	MRP7	Cre14.g618600.t3.1		1531283,1531894,1532293,1532989,1533979,1534490,1534802,1535258,1535691,1536075,1536829,1537380,1538475,1538942,1539282,1540084,1540394,1542670,1543023,1543623,1544599,1546776	1531668,1531983,1532643,1533603,1534089,1534579,1534878,1535412,1535786,1536364,1537125,1538243,1538609,1539033,1539531,1540166,1542415,1542825,1543216,1544321,1546009,1547747	Related to AtMRP11, putative ABC transporter, MRP subfamilymembrane protein [PMID: 1571683]
chr14	1551933	1554574	1552231	1554087	+	Cre14.g618611.t1.1	Cre14.g618611.t1.1		1551933,1552712,1552961,1553922	1552247,1552828,1553532,1554574	
chr14	1555683	1558234	1555887	1557748	+	Cre14.g618621.t1.1	Cre14.g618621.t1.1		1555683,1556039,1556328,1556730,1557127,1557467	1555941,1556202,1556458,1556878,1557358,1558234	
chr14	1558293	1560214	1558528	1559122	+	Cre14.g618631.t1.1	Cre14.g618631.t1.1		1558293,1558873	1558696,1560214	
chr14	1561183	1565024	1562147	1564338	+	Cre14.g618641.t1.1	Cre14.g618641.t1.1		1561183,1562024,1562487,1562827,1563320,1563655,1564300	1561868,1562272,1562742,1562909,1563494,1564105,1565024	
chr14	1568753	1569747	1568901	1569501	+	IQA1	Cre14.g618650.t1.2		1568753,1569501	1569357,1569747	contains an endekapeptide repeat in the form RADVEIQAAKL and a basic C-terminal tetrapeptide
chr14	1571684	1574002	1572354	1573779	-	MRPS7	Cre14.g618700.t1.1		1573200,1572839,1571684	1574002,1572934,1572525	
chr14	1574163	1584184	1574497	1583839	+	FAP246	Cre14.g618750.t1.1		1574163,1574921,1575276,1575647,1576165,1576719,1577270,1577558,1578987,1579560,1579987,1580303,1580739,1581383,1581755,1582428,1582985,1583530	1574650,1575046,1575374,1575835,1576296,1576892,1577353,1578589,1579241,1579673,1580100,1580403,1580868,1581439,1581844,1582532,1583137,1584184	Calpain cystein protease and Flagellar Associated Protein, found in the flagellar proteome.  Possibly an adenylate cyclase
chr14	1584283	1587584	1584341	1586670	+	Cre14.g618776.t1.1	Cre14.g618776.t1.1		1584283,1584750,1585119,1586277	1584419,1584848,1586159,1587584	
chr14	1587597	1592502	1588105	1592402	-	Cre14.g618800.t1.1	Cre14.g618800.t1.1		1587597	1592502	
chr14	1593356	1597062	1593671	1596637	-	CSB57	Cre14.g618820.t1.2		1596364,1594937,1594318,1593922,1593356	1597062,1596169,1594806,1594032,1593806	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr14	1598069	1618502	1598524	1617475	-	Cre14.g618860.t1.1	Cre14.g618860.t1.1		1618147,1616710,1616172,1615650,1613983,1613404,1612731,1611469,1610903,1610249,1609701,1609355,1609076,1608725,1607833,1607203,1606324,1605847,1605331,1604713,1604200,1603626,1603142,1602613,1601997,1601694,1601187,1600118,1599817,1599509,1598069	1618502,1617653,1616408,1615818,1614761,1613634,1613222,1612360,1611057,1610381,1609846,1609464,1609193,1608802,1608135,1607423,1607065,1605909,1605459,1604862,1604328,1603877,1603195,1602828,1602155,1601735,1601441,1600927,1599906,1599621,1599275	SNF2-related helicase.  ChromoDB CHR342; May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	1618613	1626548	1618850	1624719	+	Cre14.g618900.t1.2	Cre14.g618900.t1.2		1618613,1619157,1619555,1619976,1620681,1621137,1621546,1622537,1622874,1623300,1623848,1624195,1624533	1618955,1619214,1619676,1620050,1620851,1621339,1622051,1622614,1623067,1623350,1623967,1624248,1626548	
chr14	1626703	1632444	1626756	1631068	+	Cre14.g618926.t1.1	Cre14.g618926.t1.1		1626703,1631057	1630894,1632444	
chr14	1632503	1636514	1632642	1635895	+	Cre14.g618950.t1.2	Cre14.g618950.t1.2		1632503,1632916,1633636,1633980,1634812,1635472,1635773	1632780,1632995,1633726,1634196,1634891,1635547,1636514	
chr14	1636563	1641064	1636591	1640774	+	Cre14.g618979.t1.1	Cre14.g618979.t1.1		1636563	1641064	
chr14	1641067	1645672	1641907	1645126	-	Cre14.g619000.t1.2	Cre14.g619000.t1.2		1644918,1644630,1644494,1644120,1643689,1643074,1642168,1641067	1645672,1644674,1644514,1644256,1643938,1643424,1642838,1641907	
chr14	1647501	1650932	1648100	1650135	-	Cre14.g619050.t1.2	Cre14.g619050.t1.2		1650348,1649885,1649539,1649057,1648735,1647501	1650932,1650155,1649708,1649329,1648777,1648576	
chr14	1651190	1656912	1651767	1656835	-	CLPR1	Cre14.g619100.t1.2		1656466,1656119,1654631,1654019,1653329,1652750,1652130,1651190	1656912,1656373,1654756,1654155,1653413,1652853,1652201,1651855	
chr14	1657013	1664213	1657146	1663550	+	Cre14.g619133.t1.1	Cre14.g619133.t1.1		1657013,1657459,1658187,1658821,1659449,1660160,1660715,1661151,1661973,1662439,1662762,1663029,1663454	1657370,1657844,1658284,1658940,1659570,1660364,1660816,1661274,1662109,1662537,1662837,1663147,1664213	
chr14	1664323	1673038	1664494	1671874	+	CSK6	Cre14.g619166.t1.1		1664323,1664788,1667469,1667869,1668760,1669044,1670311,1670877,1671324,1671754	1664644,1664967,1667525,1667937,1668801,1669085,1670412,1670933,1671473,1673038	May have cyclin-dependent protein kinase activity
chr14	1673363	1678124	1673794	1676842	+	Cre14.g619200.t1.2	Cre14.g619200.t1.2		1673363,1674196,1674579,1675575,1676530	1673967,1674330,1675035,1676240,1678124	
chr14	1678296	1680302	1679447	1680036	-	Cre14.g619250.t1.2	Cre14.g619250.t1.2		1679918,1679691,1678296	1680302,1679721,1679580	
chr14	1678296	1680126	1679447	1680036	-	Cre14.g619250.t2.1	Cre14.g619250.t2.1		1679918,1679691,1678296	1680126,1679721,1679580	
chr14	1680364	1685798	1681230	1685123	-	CYN16	Cre14.g619300.t1.1		1685599,1685447,1685006,1684697,1684303,1683887,1683610,1682002,1681628,1680364	1685798,1685493,1685123,1684783,1684363,1683931,1683694,1682039,1681684,1681301	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; probably cytosolic
chr14	1685882	1692418	1687714	1692297	-	Cre14.g619350.t1.2	Cre14.g619350.t1.2		1692200,1691976,1691704,1690943,1690518,1689967,1689648,1688832,1688436,1688137,1685882	1692418,1692086,1691870,1691481,1690641,1690240,1689722,1688937,1688547,1688259,1687762	
chr14	1694334	1710468	1694949	1709811	-	Cre14.g619400.t1.2	Cre14.g619400.t1.2		1709978,1708688,1706583,1706195,1705583,1704564,1703923,1703616,1703167,1699443,1699094,1698418,1697999,1697547,1697218,1696806,1696419,1695984,1695590,1694334	1710468,1709867,1708558,1706329,1705798,1705193,1704054,1703699,1703329,1702894,1699195,1698566,1698185,1697707,1697301,1696968,1696496,1696154,1695753,1695367	
chr14	1710599	1712729	1710697	1711806	+	Cre14.g619450.t1.2	Cre14.g619450.t1.2		1710599,1710879,1711031,1711431,1711735	1710793,1710960,1711353,1711596,1712729	
chr14	1713659	1723940	1713751	1722684	+	Cre14.g619500.t1.1	Cre14.g619500.t1.1		1713659,1714376,1715002,1716712,1719483,1720569	1714058,1714470,1716138,1718299,1719736,1723940	
chr14	1723971	1729598	1724657	1729457	-	POA7	Cre14.g619550.t1.2		1729436,1729276,1729052,1728346,1727870,1727542,1726947,1726393,1725902,1725428,1723971	1729598,1729358,1729091,1728429,1727940,1727599,1727063,1726505,1725989,1725492,1724667	(PSA3) 20S proteasome alpha subunit G (type 3)
chr14	1723971	1729598	1724667	1729457	-	POA7	Cre14.g619550.t2.1		1729436,1729276,1729052,1728346,1727870,1727542,1726947,1726393,1725902,1725201,1723971	1729598,1729358,1729091,1728429,1727940,1727599,1727063,1726505,1725989,1725492,1724667	(PSA3) 20S proteasome alpha subunit G (type 3)
chr14	1729709	1734945	1729735	1734386	+	Cre14.g619613.t1.2	Cre14.g619613.t1.2		1729709,1730096,1730510,1730994,1731467,1732029,1732546,1733318	1729930,1730117,1730582,1731078,1731542,1732180,1732947,1734945	
chr14	1735133	1737878	1735594	1737803	-	Cre14.g619650.t1.2	Cre14.g619650.t1.2		1737635,1737034,1736202,1735133	1737878,1737172,1736315,1735761	
chr14	1739609	1742700	1739725	1742173	+	Cre14.g619700.t1.1	Cre14.g619700.t1.1		1739609,1741885	1741765,1742700	
chr14	1742749	1747050	1742817	1745457	+	Cre14.g619750.t1.1	Cre14.g619750.t1.1		1742749,1745094	1744956,1747050	
chr14	1747083	1770118	1747956	1769870	-	SPO11B	Cre14.g619800.t1.2		1769507,1768870,1768285,1767851,1767394,1766748,1766304,1766039,1765223,1764505,1764131,1763341,1762925,1762024,1757150,1756778,1756234,1755435,1754999,1754606,1754167,1753805,1753242,1752667,1751457,1751054,1750489,1749978,1748802,1747083	1770118,1768953,1768333,1768073,1767520,1766814,1766373,1766105,1765433,1764752,1764167,1763756,1763110,1762551,1761796,1756860,1756345,1755825,1755174,1754677,1754364,1753899,1753314,1752750,1752415,1751193,1750604,1750202,1749491,1748421	Topoisomerase VI subunit A (type IIB), involved in meiosis, homolog of eukaryotic SPO11; ; Chlamydomonas has at two homologues.
chr14	1770833	1776038	1771186	1776031	-	Cre14.g619825.t1.1	Cre14.g619825.t1.1		1775856,1775450,1775169,1774856,1774464,1774003,1773605,1773218,1772845,1772197,1771817,1770833	1776038,1775725,1775209,1774891,1774647,1774092,1773769,1773309,1772936,1772307,1771892,1771417	
chr14	1776093	1779278	1777298	1779086	-	Cre14.g619850.t1.1	Cre14.g619850.t1.1		1778987,1777962,1777510,1776093	1779278,1778855,1777714,1777357	
chr14	1779333	1791118	1779395	1790909	-	ELG35	Cre14.g619854.t1.2		1790686,1790422,1789804,1789387,1788638,1788134,1786962,1786336,1785955,1785003,1784562,1783908,1783624,1783311,1782960,1782608,1782179,1781678,1781176,1780759,1780502,1780023,1779333	1791118,1790525,1789919,1789517,1788750,1788364,1787650,1786381,1786063,1785014,1784632,1783965,1783691,1783346,1783016,1782673,1782283,1781801,1781228,1780812,1780560,1780131,1779824	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr14	1791259	1796021	1791432	1795309	+	PHX22	Cre14.g619900.t1.1		1791259,1792107,1792860,1793623,1794075,1795309	1791612,1792309,1792972,1793708,1794982,1796021	
chr14	1796023	1797958	1796995	1797801	-	Cre14.g619950.t1.2	Cre14.g619950.t1.2		1797633,1796023	1797958,1797181	
chr14	1798159	1802200	1798360	1801746	+	Cre14.g620000.t1.2	Cre14.g620000.t1.2		1798159,1798709,1799498,1799984,1801559	1798441,1799152,1799782,1801329,1802200	
chr14	1802213	1805868	1802707	1805191	-	Cre14.g620050.t1.1	Cre14.g620050.t1.1		1805604,1805293,1805132,1803093,1802213	1805868,1805349,1805195,1804941,1802875	
chr14	1807859	1808821	1808058	1808302	+	Cre14.g620076.t1.1	Cre14.g620076.t1.1		1807859	1808821	
chr14	1808979	1812600	1809351	1811497	+	Cre14.g620100.t1.2	Cre14.g620100.t1.2		1808979,1811182	1810998,1812600	
chr14	1814124	1820643	1814221	1819081	+	Cre14.g620150.t1.1	Cre14.g620150.t1.1		1814124,1814436,1815404,1815881,1816288,1816574,1816945,1817318,1817657,1818000,1818525	1814347,1814548,1815480,1815981,1816332,1816675,1817064,1817386,1817736,1818086,1820643	
chr14	1820769	1824260	1820847	1823647	+	Cre14.g620200.t1.1	Cre14.g620200.t1.1		1820769,1821331,1821763,1822599,1823135,1823437	1821177,1821485,1822288,1822737,1823220,1824260	
chr14	1824559	1826570	1824782	1825839	+	Cre14.g620217.t1.1	Cre14.g620217.t1.1		1824559,1825366,1825839	1824930,1825423,1826570	
chr14	1824559	1827641	1824861	1827478	+	Cre14.g620233.t1.1	Cre14.g620233.t1.1		1824559,1825366,1827302	1824930,1825423,1827641	
chr14	1834049	1842300	1834333	1841830	+	Cre14.g620250.t1.1	Cre14.g620250.t1.1		1834049,1834717,1834947,1835208,1835551,1835997,1836636,1837342,1837836,1838349,1838795,1839266,1839671,1839917,1840685,1841343,1841830	1834534,1834791,1834995,1835302,1835751,1836278,1837142,1837725,1838198,1838660,1839118,1839553,1839817,1840546,1840822,1841595,1842300	
chr14	1834049	1842300	1834333	1841830	+	Cre14.g620250.t2.1	Cre14.g620250.t2.1		1834049,1834717,1834947,1835208,1835551,1835997,1836636,1837342,1837836,1838349,1838795,1839266,1839671,1839917,1840685,1841343,1841830	1834534,1834791,1834992,1835302,1835751,1836278,1837142,1837725,1838198,1838660,1839118,1839553,1839817,1840546,1840822,1841595,1842300	
chr14	1843695	1847404	1843975	1846600	+	ASB1	Cre14.g620300.t1.2		1843695,1844087,1844294,1844572,1845233,1846191,1846558	1844018,1844211,1844402,1844682,1845323,1846359,1847404	Anthranilate synthase beta subunit; based on similarity to Arabidopsis homolog
chr14	1847525	1850338	1847650	1849160	+	GCH3	Cre14.g620350.t1.2		1847525	1850338	Putative bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase (GCHII/DBPS), riboflavin (vitamin B2) biosynthesis, probably plastidial protein. GCHII/DBPS
chr14	1850562	1852744	1851102	1852712	-	SPC22	Cre14.g620400.t1.2		1852624,1852464,1852217,1851805,1851472,1850562	1852744,1852549,1852366,1851925,1851519,1851116	22 kDa subunit of the ER signal peptidase; involved in processing signal peptides from ER-targeted proteins
chr14	1852825	1859524	1852946	1859403	-	Cre14.g620450.t1.1	Cre14.g620450.t1.1		1859228,1858450,1857831,1857205,1856819,1856197,1854773,1853491,1852825	1859524,1859009,1858262,1857501,1856986,1856581,1856022,1854396,1853300	
chr14	1859675	1863374	1859836	1861926	+	Cre14.g620500.t1.2	Cre14.g620500.t1.2		1859675,1860187,1860740,1860997,1861296	1859871,1860374,1860833,1861081,1863374	
chr14	1865969	1869014	1866772	1868909	-	PHC2	Cre14.g620600.t1.2		1868862,1868317,1866988,1865969	1869014,1868512,1868201,1866803	pherophorin-C2 (PHC2) [PMID: 16367971; Genbank entry DQ196108]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain; Flagellar Associated Protein 202
chr14	1869115	1873366	1871549	1871976	+	Cre14.g620652.t1.1	Cre14.g620652.t1.1		1869115,1871485,1871728	1869642,1871577,1873366	
chr14	1873369	1877024	1874349	1876532	-	PHC24	Cre14.g620702.t1.1		1876482,1875936,1874550,1873369	1877024,1876131,1875778,1874380	
chr14	1893043	1895500	1893592	1895471	-	Cre14.g620750.t1.1	Cre14.g620750.t1.1		1895310,1895152,1894965,1893043	1895500,1895218,1895080,1894742	
chr14	1895625	1903986	1895673	1903300	+	Cre14.g620800.t1.2	Cre14.g620800.t1.2		1895625,1895996,1899785,1900627,1901463,1901807,1902205,1902625,1903018	1895820,1899488,1900390,1900721,1901578,1901940,1902302,1902675,1903986	
chr14	1904022	1908164	1905683	1907861	-	NSG17	Cre14.g620850.t1.2		1907397,1906114,1904022	1908164,1907164,1905776	Expressed during nitrogen-starved gametogenesis [PMID: 15459796]
chr14	1911785	1913859	1912524	1913317	+	Cre14.g620900.t1.2	Cre14.g620900.t1.2		1911785,1912715,1913095	1912579,1912764,1913859	
chr14	1913869	1918444	1914236	1918365	-	Cre14.g620951.t1.1	Cre14.g620951.t1.1		1917930,1916922,1916657,1916249,1915983,1915465,1915171,1914904,1913869	1918444,1917743,1916713,1916285,1916043,1915602,1915234,1915046,1914705	
chr14	1918615	1928075	1918774	1927764	+	Cre14.g621000.t1.2	Cre14.g621000.t1.2		1918615,1919490,1920238,1920853,1921400,1922011,1922386,1922801,1923253,1923625,1924094,1924499,1924864,1925345,1925676,1926035,1926268,1926748,1927239	1919023,1919591,1920387,1920912,1921477,1922115,1922484,1922895,1923358,1923813,1924186,1924554,1924965,1925411,1925765,1926102,1926441,1926847,1928075	Putative TPR-repeat pre-mRNA splicing factor, related to the Drosophila Crooked Neck (CRN) cell cycle protein which localizes with SR and Sm proteins
chr14	1928215	1936105	1929190	1933926	+	Cre14.g621050.t1.1	Cre14.g621050.t1.1		1928215,1929143,1929470,1929656,1930034,1930269,1932888	1928381,1929238,1929519,1929764,1930107,1932615,1936105	
chr14	1936995	1947960	1937050	1947407	+	Cre14.g621100.t1.1	Cre14.g621100.t1.1		1936995,1937430,1937891,1938256,1938649,1939534,1940070,1940698,1941289,1942233,1942673,1943005,1943632,1944160,1944726,1945514,1945872,1946363,1946735,1947301	1937279,1937594,1937956,1938363,1938757,1939633,1940163,1940766,1941647,1942284,1942740,1943361,1943723,1944352,1945160,1945620,1945945,1946459,1947022,1947960	
chr14	1948009	1950071	1948402	1949209	+	Cre14.g621150.t1.1	Cre14.g621150.t1.1		1948009,1948348,1949041	1948205,1948474,1950071	
chr14	1953215	1959904	1953627	1958074	+	Cre14.g621172.t1.2	Cre14.g621172.t1.2		1953215,1953800,1954569,1954904,1957648	1953654,1954021,1954700,1957453,1959904	
chr14	1959955	1964590	1959989	1964011	+	Cre14.g621200.t1.1	Cre14.g621200.t1.1		1959955,1961192,1962068,1962441,1962808,1963345,1963635,1963891	1960885,1961793,1962156,1962538,1963054,1963386,1963679,1964590	
chr14	1964655	1967846	1964728	1967061	+	Cre14.g621250.t1.2	Cre14.g621250.t1.2		1964655,1965791,1966115,1966466,1966908	1965449,1965945,1966167,1966631,1967846	
chr14	1967899	1971636	1967993	1971008	+	Cre14.g621300.t1.1	Cre14.g621300.t1.1		1967899,1968246,1968431,1968763,1969361,1969852,1970214,1970990	1968165,1968336,1968588,1969055,1969578,1969980,1970367,1971636	
chr14	1967899	1971636	1967993	1971008	+	Cre14.g621300.t2.1	Cre14.g621300.t2.1		1967899,1968246,1968431,1968763,1969361,1969852,1970214,1970990	1968165,1968336,1968588,1968959,1969578,1969980,1970367,1971636	
chr14	1971975	1986266	1972349	1985195	+	Cre14.g621351.t1.1	Cre14.g621351.t1.1		1971975,1972836,1973322,1973883,1974283,1974721,1975230,1975737,1976376,1976981,1979065,1979446,1979823,1980279,1980726,1981135,1981638,1982159,1982685,1983701,1984080,1985141	1972401,1972969,1973527,1973997,1974333,1974789,1975284,1975834,1976693,1978713,1979158,1979511,1979882,1980402,1980847,1981232,1981788,1982220,1983214,1983864,1984148,1986266	
chr14	1986579	1992274	1987366	1992142	-	Cre14.g621400.t1.1	Cre14.g621400.t1.1		1992018,1991739,1991574,1991128,1990570,1990085,1989494,1989258,1988866,1988537,1987924,1986579	1992274,1991903,1991639,1991256,1990669,1990184,1989596,1989326,1989012,1988616,1988190,1987630	
chr14	1994901	1997316	1994923	1997084	+	RPL5	Cre14.g621450.t1.2		1994901,1995562,1996928	1995415,1995795,1997316	Cytosolic 60S large ribosomal subunit protein L5
chr14	1997845	2000696	1997955	1999998	+	Cre14.g621475.t1.1	Cre14.g621475.t1.1		1997845,1998241,1998441,1998729,1999125,1999949	1998028,1998294,1998545,1998860,1999710,2000696	
chr14	2002476	2010077	2002979	2010044	+	Cre14.g621501.t1.1	Cre14.g621501.t1.1		2002476,2003621,2005112,2009316	2003379,2005003,2009056,2010077	
chr14	2002476	2009107	2002979	2009065	+	Cre14.g621501.t2.1	Cre14.g621501.t2.1		2002476,2003621,2005112	2003379,2005003,2009107	
chr14	2009196	2011138	2009461	2010639	+	Cre14.g621501.t4.1	Cre14.g621501.t4.1		2009196,2010180	2009920,2011138	
chr14	2009156	2010077	2009461	2010044	+	Cre14.g621501.t3.1	Cre14.g621501.t3.1		2009156	2010077	
chr14	2010080	2012125	2010425	2012009	-	Cre14.g621600.t1.2	Cre14.g621600.t1.2		2011674,2011158,2010080	2012125,2011526,2010425	
chr14	2012226	2017407	2012494	2016352	+	MCT1	Cre14.g621650.t1.1		2012226,2012486,2013249,2014040,2014403,2015017,2015429,2015853,2016202	2012300,2012758,2013359,2014119,2014529,2015150,2015516,2015948,2017407	
chr14	2017876	2018720	2017981	2018450	+	Cre14.g621676.t1.1	Cre14.g621676.t1.1		2017876,2018315	2018092,2018720	
chr14	2018756	2024095	2019388	2023763	-	MMP31	Cre14.g621700.t1.1		2023717,2023454,2022776,2022481,2022003,2020874,2020375,2018756	2024095,2023536,2023246,2022563,2022080,2021635,2020486,2020183	Matrix metalloproteinase belonging to the M11 peptidase family
chr14	2024150	2034535	2024899	2034440	-	USP	Cre14.g621751.t1.1		2034415,2034278,2033799,2033490,2033088,2032279,2031539,2031026,2030680,2030296,2029852,2029571,2029100,2028734,2028454,2028129,2027772,2027300,2026807,2026550,2026002,2024150	2034535,2034338,2034060,2033559,2033210,2032443,2031621,2031142,2030756,2030410,2029946,2029631,2029187,2028848,2028508,2028185,2027862,2027358,2026911,2026639,2026135,2025515	related to UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) and related to UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) = UDP-glucose pyrophosphorylase (UDPGP) (UGPase)
chr14	2035420	2042175	2036010	2042042	-	Cre14.g621800.t1.1	Cre14.g621800.t1.1		2041970,2041145,2040898,2040436,2040136,2039737,2039435,2039074,2038493,2038013,2037686,2036989,2035420	2042175,2041249,2040999,2040482,2040236,2039846,2039475,2039156,2038602,2038094,2037741,2037048,2036685	
chr14	2042230	2050245	2043141	2050002	-	Cre14.g621850.t1.1	Cre14.g621850.t1.1		2049729,2049098,2048417,2048183,2047834,2046573,2046270,2045976,2045621,2045032,2044369,2042230	2050245,2049193,2048514,2048246,2047890,2047444,2046342,2046028,2045720,2045211,2044460,2044009	
chr14	2050356	2064257	2050941	2063843	+	Cre14.g622000.t1.1	Cre14.g622000.t1.1		2050356,2050877,2051600,2054525,2054992,2057191,2057965,2060142	2050649,2051091,2054221,2054785,2057016,2057731,2059926,2064257	
chr14	2064366	2070707	2064574	2070559	+	ELG28	Cre14.g622050.t1.1		2064366,2064734,2065198,2065530,2065968,2066343,2066965,2067528,2067804,2068471,2068848,2069178,2069544,2070024	2064634,2064987,2065370,2065680,2066061,2066443,2067055,2067602,2068160,2068553,2068890,2069309,2069659,2070707	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr14	2071216	2078087	2071389	2077428	+	Cre14.g622075.t1.1	Cre14.g622075.t1.1		2071216,2072367,2073611,2074692,2075354,2076004,2076661,2076936,2077157,2077428	2072191,2073467,2074518,2075163,2075691,2076481,2076808,2077007,2077321,2078087	
chr14	2089676	2095053	2090682	2093379	+	Cre14.g622100.t1.2	Cre14.g622100.t1.2		2089676,2090609,2091156,2091727,2092215,2092631,2093174,2093353	2090475,2090971,2091449,2092061,2092462,2092851,2093230,2095053	
chr14	2089851	2095053	2090682	2093379	+	Cre14.g622100.t3.1	Cre14.g622100.t3.1		2089851,2090609,2091156,2091727,2092215,2092631,2093174,2093353	2090557,2090971,2091449,2092061,2092462,2092851,2093230,2095053	
chr14	2089676	2095051	2090682	2093379	+	Cre14.g622100.t2.1	Cre14.g622100.t2.1		2089676,2090609,2091156,2091727,2092215,2092631,2093353	2090475,2090971,2091449,2092061,2092462,2092851,2095051	
chr14	2095080	2099565	2096456	2099456	-	Cre14.g622150.t1.1	Cre14.g622150.t1.1		2099328,2098586,2098232,2097590,2097159,2095080	2099565,2098796,2098450,2098089,2097429,2096939	
chr14	2096343	2099565	2096456	2099456	-	Cre14.g622150.t2.1	Cre14.g622150.t2.1		2099328,2098586,2098232,2097590,2097159,2096343	2099565,2098796,2098450,2098089,2097429,2096939	
chr14	2099726	2102720	2099939	2102092	+	Cre14.g622200.t1.2	Cre14.g622200.t1.2		2099726,2100734,2100948,2101320,2101683,2101951	2100547,2100807,2101186,2101502,2101754,2102720	
chr14	2100697	2102720	2101009	2102092	+	Cre14.g622200.t2.1	Cre14.g622200.t2.1		2100697,2100948,2101320,2101683,2101951	2100807,2101186,2101502,2101754,2102720	
chr14	2110129	2113065	2110585	2113001	-	Cre14.g622270.t1.1	Cre14.g622270.t1.1		2111644,2111166,2110807,2110129	2113065,2111533,2110900,2110665	
chr14	2140380	2143785	2140475	2143690	-	Cre14.g622340.t1.1	Cre14.g622340.t1.1		2143659,2141207,2140380	2143785,2142534,2141087	
chr14	2144450	2150965	2144471	2150830	-	Cre14.g622410.t1.1	Cre14.g622410.t1.1		2150733,2149234,2148209,2147554,2146760,2145826,2144450	2150965,2149668,2148568,2148122,2147488,2146147,2144758	
chr14	2157126	2158453	2157233	2158182	+	Cre14.g622480.t1.1	Cre14.g622480.t1.1		2157126	2158453	
chr14	2182724	2187189	2183031	2186978	-	Cre14.g622550.t1.1	Cre14.g622550.t1.1		2186045,2185710,2185254,2184819,2184591,2184313,2183725,2182724	2187189,2185781,2185352,2185058,2184649,2184347,2183931,2183495	
chr14	2188130	2189959	2188289	2189848	-	Cre14.g622600.t1.1	Cre14.g622600.t1.1		2189798,2189373,2188130	2189959,2189465,2188989	
chr14	2190014	2192929	2191752	2192874	-	Cre14.g622650.t1.1	Cre14.g622650.t1.1		2192320,2191894,2190014	2192929,2192004,2191810	
chr14	2193024	2199559	2195739	2199360	-	Cre14.g622700.t1.2	Cre14.g622700.t1.2		2199357,2198901,2198618,2198293,2197956,2197463,2197044,2196666,2196174,2193024	2199559,2198993,2198718,2198393,2198017,2197576,2197150,2196762,2196268,2195833	
chr14	2199625	2202114	2200471	2202058	-	Cre14.g622750.t1.1	Cre14.g622750.t1.1		2202022,2201446,2201050,2200739,2199625	2202114,2201802,2201132,2200873,2200547	
chr14	2202220	2208581	2202456	2208081	+	Cre14.g622800.t1.1	Cre14.g622800.t1.1		2202220,2202922,2203387,2203861,2204215,2204767,2205262,2205743,2206028,2206454,2207824	2202723,2203007,2203461,2203957,2204512,2204901,2205506,2205844,2206277,2207536,2208581	
chr14	2208586	2212169	2209024	2211776	-	RAD51	Cre14.g622850.t1.1		2211680,2211447,2211202,2210988,2210650,2210460,2210180,2209928,2209711,2209339,2208586	2212169,2211591,2211312,2211079,2210744,2210544,2210255,2209976,2209774,2209433,2209148	Homologous to RecA and eukaryotic DMC1 involved in meiosis
chr14	2212314	2219819	2213167	2219622	-	Cre14.g622900.t1.1	Cre14.g622900.t1.1		2218533,2217880,2217521,2217090,2216543,2216100,2215369,2214978,2214434,2212314	2219819,2218260,2217614,2217226,2216854,2216372,2215767,2215112,2214592,2214223	
chr14	2219874	2226269	2220133	2226065	-	Cre14.g622901.t1.1	Cre14.g622901.t1.1		2226036,2225101,2224773,2224410,2224107,2223673,2223178,2222537,2222154,2221844,2221336,2220969,2220594,2220417,2219874	2226269,2225790,2224900,2224518,2224182,2223802,2223225,2222989,2222236,2221921,2221560,2221130,2220734,2220469,2220266	
chr14	2227640	2230160	2228061	2229624	+	Cre14.g622951.t1.1	Cre14.g622951.t1.1		2227640,2228444,2228924	2228111,2228536,2230160	
chr14	2231680	2236481	2231705	2235774	+	Cre14.g623000.t1.1	Cre14.g623000.t1.1		2231680,2231990,2232664,2233354,2233826,2234437,2234822,2235125,2235654	2231899,2232107,2232801,2233411,2233952,2234504,2234877,2235256,2236481	
chr14	2237920	2243721	2238668	2241964	+	Cre14.g623050.t1.1	Cre14.g623050.t1.1		2237920,2238658,2240149	2238238,2239931,2243721	
chr14	2237920	2243721	2238668	2241964	+	Cre14.g623050.t2.1	Cre14.g623050.t2.1		2237920,2238658,2240149	2238238,2239874,2243721	
chr14	2244860	2249135	2245286	2248562	+	Cre14.g623100.t1.2	Cre14.g623100.t1.2		2244860,2246159	2245913,2249135	
chr14	2249340	2252909	2249564	2252178	+	Cre14.g623125.t1.1	Cre14.g623125.t1.1		2249340,2251911	2251646,2252909	
chr14	2252960	2265219	2252976	2265023	+	Cre14.g623150.t1.1	Cre14.g623150.t1.1		2252960,2254118,2254820,2255238,2255963,2256552,2256981,2257492,2257976,2258176,2258408,2259587,2260757,2261305,2261738,2262398,2263159,2263684,2264191	2253718,2254270,2254994,2255680,2256252,2256696,2257096,2257743,2258059,2258251,2259318,2260453,2261005,2261494,2262069,2262829,2263297,2263942,2265219	
chr14	2265929	2268629	2266680	2267831	-	Cre14.g623176.t1.1	Cre14.g623176.t1.1		2267531,2267048,2265929	2268629,2267102,2266712	
chr14	2268960	2274306	2269089	2273751	+	LAP1	Cre14.g623200.t1.1		2268960,2269540,2270070,2270791,2271068,2271349,2271753,2272346,2273178,2273618	2269206,2269653,2270494,2270935,2271129,2271508,2271917,2272672,2273272,2274306	
chr14	2274354	2277469	2275938	2277433	-	Cre14.g623250.t1.1	Cre14.g623250.t1.1		2274354	2277469	
chr14	2277524	2287089	2278133	2287008	-	NCP1	Cre14.g623300.t1.2		2285953,2285411,2284569,2284155,2283820,2283552,2283098,2282735,2282328,2281524,2281132,2280745,2279966,2279468,2278985,2278604,2277524	2287089,2285583,2284786,2284310,2283906,2283601,2283158,2282819,2282473,2281577,2281258,2280820,2280054,2279509,2279116,2278692,2278232	ADPH--cytochrome P450 reductase-related protein; (CPR) (P450R); Fe-S oxidoreductases; Radical SAM superfamily
chr14	2287200	2292981	2287393	2292646	+	Cre14.g623350.t1.2	Cre14.g623350.t1.2		2287200,2287750,2288439,2288794,2289085,2289488,2289794,2290193,2290538,2291015,2291544,2291892,2292481	2287579,2287862,2288523,2288853,2289180,2289574,2289856,2290275,2290589,2291254,2291687,2292128,2292981	
chr14	2292990	2302549	2295646	2301809	-	Cre14.g623403.t1.2	Cre14.g623403.t1.2		2302117,2300603,2299595,2299129,2298474,2298134,2297640,2292990	2302549,2301810,2300323,2299182,2298568,2298209,2297742,2297361	
chr14	2302826	2309439	2305196	2309289	-	Cre14.g623439.t1.1	Cre14.g623439.t1.1		2309133,2308439,2302826	2309439,2308941,2305956	
chr14	2302826	2306149	2305196	2305929	-	Cre14.g623439.t2.1	Cre14.g623439.t2.1		2302826	2306149	
chr14	2306196	2309439	2308434	2309289	-	Cre14.g623439.t3.1	Cre14.g623439.t3.1		2309133,2306196	2309439,2308941	
chr14	2310473	2319089	2310803	2318691	-	Cre14.g623550.t1.1	Cre14.g623550.t1.1		2315988,2315776,2315428,2315015,2314611,2313966,2310473	2319089,2315832,2315499,2315095,2314673,2314238,2313695	
chr14	2319144	2320309	2319539	2319708	-	Cre14.g623576.t1.1	Cre14.g623576.t1.1		2319144	2320309	
chr14	2320480	2323582	2320581	2322651	+	Cre14.g623600.t1.2	Cre14.g623600.t1.2		2320480,2320828,2321162	2320628,2320890,2323582	
chr14	2323614	2329089	2325294	2328696	-	ADH7	Cre14.g623650.t1.2		2328645,2328520,2328252,2327856,2327264,2326865,2326601,2326269,2325915,2325601,2323614	2329089,2328539,2328330,2327999,2327489,2327067,2326654,2326430,2325983,2325705,2325369	Alcohol dehydrogenase, zinc-containing
chr14	2329154	2335599	2329959	2335355	-	OPR63	Cre14.g623700.t1.1		2335239,2335074,2334176,2333325,2331529,2329154	2335599,2335146,2335008,2333771,2332897,2331033	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr14	2335764	2341979	2336573	2341570	-	Cre14.g623750.t1.2	Cre14.g623750.t1.2		2341739,2341524,2341087,2340171,2339827,2339522,2338957,2338619,2338356,2338038,2337542,2337031,2335764	2341979,2341626,2341151,2340947,2339939,2339668,2339101,2338663,2338465,2338173,2337666,2337130,2336705	
chr14	2342080	2344443	2342185	2343741	+	Cre14.g623800.t1.1	Cre14.g623800.t1.1		2342080,2342453,2342931,2343557	2342257,2342696,2343072,2344443	Peptide alpha-N-acetyltransferase
chr14	2346817	2352480	2347727	2351875	-	Cre14.g623850.t1.1	Cre14.g623850.t1.1		2351460,2351308,2350877,2350378,2349912,2348595,2346817	2352480,2351328,2351189,2350594,2350143,2348931,2348325	
chr14	2346817	2352480	2347727	2351875	-	Cre14.g623850.t2.1	Cre14.g623850.t2.1		2351460,2350877,2350378,2349912,2348595,2346817	2352480,2351189,2350594,2350143,2348931,2348325	
chr14	2352787	2357795	2352848	2356302	+	Cre14.g623900.t1.1	Cre14.g623900.t1.1		2352787,2353404,2353543,2354138,2354589,2355097,2355704	2353272,2353424,2353855,2354354,2354820,2355433,2357795	
chr14	2352804	2357795	2352848	2356302	+	Cre14.g623900.t2.1	Cre14.g623900.t2.1		2352804,2353543,2354138,2354589,2355097,2355704	2353272,2353855,2354354,2354820,2355433,2357795	
chr14	2359838	2363480	2361763	2363422	-	Cre14.g623926.t1.1	Cre14.g623926.t1.1		2363330,2363007,2362781,2362445,2362145,2359838	2363480,2363082,2362801,2362501,2362231,2361886	
chr14	2363529	2367500	2363713	2367289	-	Cre14.g623950.t1.1	Cre14.g623950.t1.1		2367035,2366725,2366080,2365760,2365229,2364965,2364533,2364087,2363529	2367500,2366777,2366497,2365842,2365342,2365023,2364590,2364240,2363834	
chr14	2363529	2367740	2363713	2367289	-	Cre14.g623950.t2.1	Cre14.g623950.t2.1		2367035,2366725,2366080,2365760,2365229,2364965,2364533,2364087,2363529	2367740,2366777,2366497,2365842,2365342,2365023,2364590,2364240,2363834	
chr14	2368051	2374969	2368491	2373995	+	Cre14.g624000.t1.1	Cre14.g624000.t1.1		2368051,2369294,2369690,2370658,2371269,2372178,2372873,2373168	2368604,2369424,2370438,2371100,2371749,2372524,2372970,2374969	
chr14	2375026	2378390	2375705	2377781	-	Cre14.g624050.t1.2	Cre14.g624050.t1.2		2377734,2377475,2375026	2378390,2377534,2377203	
chr14	2378551	2381089	2380213	2380614	+	Cre14.g624125.t1.1	Cre14.g624125.t1.1		2378551,2379922,2380496	2379054,2380272,2381089	
chr14	2378551	2381089	2380213	2380614	+	Cre14.g624125.t2.1	Cre14.g624125.t2.1		2378551,2379922,2380496	2378935,2380272,2381089	
chr14	2381421	2387592	2381501	2386218	+	Cre14.g624201.t1.1	Cre14.g624201.t1.1		2381421,2381897,2382375,2382876,2383231,2383584,2383966,2384625,2384957,2385290,2385726,2386119	2381634,2382015,2382461,2382953,2383326,2383652,2384035,2384758,2385010,2385429,2385789,2387592	
chr14	2387611	2392380	2388282	2392145	-	VTE6	Cre14.g624350.t1.2		2391514,2391021,2390167,2389579,2389130,2388764,2387611	2392380,2391100,2390214,2389706,2389229,2388937,2388399	gamma-tocopherol methyltransferase.  MPBQ/MSBQ methyltransferase (cyanobacterial type), chloroplast precursor
chr14	2392961	2399134	2393251	2398909	+	FAP99	Cre14.g624400.t1.2		2392961,2393782,2394789,2395132,2395569,2395887,2396265,2396706,2397088,2397427,2397886,2398283,2398660	2393583,2393874,2395002,2395370,2395710,2396033,2396498,2396858,2397216,2397588,2398014,2398447,2399134	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr14	2399331	2412439	2399673	2411207	+	Cre14.g624450.t1.1	Cre14.g624450.t1.1		2399331,2399919,2400321,2400531,2401112,2402384,2403068,2403441,2403876,2404153,2404413,2406656,2407566,2407868,2408089,2409135,2410109	2399840,2400033,2400349,2400885,2402210,2402843,2403294,2403656,2404001,2404220,2406398,2406772,2407672,2407927,2408788,2409581,2412439	
chr14	2412501	2413302	2412767	2413222	+	Cre14.g624476.t1.1	Cre14.g624476.t1.1		2412501,2413100	2413023,2413302	
chr14	2413363	2415832	2413396	2415220	+	RRP46	Cre14.g624500.t1.2		2413363,2413532,2413923,2414285,2414593,2414938	2413467,2413707,2414023,2414378,2414660,2415832	putative Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein 46)
chr14	2416273	2418530	2417266	2418474	-	Cre14.g624550.t1.1	Cre14.g624550.t1.1		2418247,2418033,2417720,2416273	2418530,2418148,2417829,2417479	
chr14	2418681	2425652	2418809	2425547	+	Cre14.g624600.t1.1	Cre14.g624600.t1.1		2418681,2419073,2421403,2422183,2423676,2423909,2424213,2424578,2425060	2419002,2421195,2421951,2423538,2423711,2423987,2424382,2424846,2425652	
chr14	2425655	2429510	2426482	2429244	-	Cre14.g624650.t1.2	Cre14.g624650.t1.2		2429090,2428753,2428431,2427869,2427593,2426939,2425655	2429510,2428899,2428522,2428123,2427704,2427355,2426793	
chr14	2429671	2433828	2430020	2432341	+	Cre14.g624700.t1.2	Cre14.g624700.t1.2		2429671,2430588	2430055,2433828	
chr14	2433844	2436740	2434355	2436691	-	Cre14.g624750.t1.2	Cre14.g624750.t1.2		2436625,2436268,2435776,2435293,2433844	2436740,2436303,2435891,2435377,2435078	
chr14	2436789	2442390	2438692	2442191	-	Cre14.g624800.t1.2	Cre14.g624800.t1.2		2442056,2441213,2440934,2440633,2440431,2439972,2439608,2439048,2436789	2442390,2441422,2441027,2440696,2440455,2440319,2439800,2439331,2438824	
chr14	2442558	2445672	2443020	2445572	-	Cre14.g624850.t1.1	Cre14.g624850.t1.1		2445519,2445097,2444507,2444055,2443480,2442558	2445672,2445440,2444572,2444147,2443619,2443092	
chr14	2445821	2450330	2446009	2450076	+	FAP171	Cre14.g624900.t1.2		2445821,2446348,2446737,2447244,2447604,2448014,2448601,2449020	2446174,2446500,2446931,2447399,2447772,2448246,2448858,2450330	Flagellar Associated Protein, found in the flagellar proteome
chr14	2450361	2474860	2450821	2474734	-	DHC10	Cre14.g624950.t1.1		2474710,2474584,2474287,2473668,2472846,2472455,2472133,2471793,2471410,2471080,2470730,2470118,2469667,2469281,2468835,2468408,2468222,2467707,2467133,2466818,2466626,2466283,2465967,2465695,2465276,2464920,2464530,2464153,2463199,2462822,2462470,2462057,2461545,2461192,2460872,2459460,2459032,2458429,2458197,2457772,2457483,2457104,2456812,2456447,2455935,2455612,2455305,2454971,2454705,2453253,2452684,2451409,2450361	2474860,2474643,2474490,2473934,2473446,2472591,2472302,2471925,2471649,2471236,2470905,2470263,2469832,2469454,2469053,2468507,2468286,2467978,2467352,2466954,2466701,2466453,2466152,2465814,2465524,2465108,2464701,2464359,2463917,2462950,2462642,2462300,2461718,2461426,2461068,2460677,2459250,2458809,2458271,2457977,2457582,2457328,2456919,2456657,2456298,2455745,2455429,2455144,2454848,2454505,2453020,2452495,2451093	
chr14	2475006	2477230	2475124	2476748	+	Cre14.g625000.t1.1	Cre14.g625000.t1.1		2475006,2475410,2475589,2475976,2476586	2475316,2475449,2475782,2476278,2477230	
chr14	2479381	2488442	2479989	2487155	+	Cre14.g625050.t1.1	Cre14.g625050.t1.1		2479381,2480238,2480649,2481013,2481271,2481572,2481973,2482224,2482682,2483167,2483758,2483999,2485559,2485791,2486129,2486328,2486533,2486696,2487122	2479992,2480369,2480687,2481051,2481376,2481767,2482051,2482527,2482862,2483443,2483871,2485435,2485614,2485974,2486185,2486390,2486592,2486950,2488442	
chr14	2488491	2492372	2488938	2491051	+	Cre14.g625100.t1.2	Cre14.g625100.t1.2		2488491	2492372	
chr14	2492390	2499570	2492858	2498838	-	PGM8	Cre14.g625150.t1.1		2497301,2496819,2496222,2495800,2495332,2494913,2494393,2494068,2493507,2492390	2499570,2496901,2496322,2495902,2495378,2494999,2494492,2494109,2493602,2493101	
chr14	2499751	2502856	2499972	2501472	+	Cre14.g625200.t1.2	Cre14.g625200.t1.2		2499751,2500150,2500460	2500064,2500245,2502856	
chr14	2499862	2502856	2499972	2501472	+	Cre14.g625200.t2.1	Cre14.g625200.t2.1		2499862,2500150,2500460	2500064,2500245,2502856	
chr14	2503041	2507482	2503207	2507409	+	Cre14.g625225.t1.1	Cre14.g625225.t1.1		2503041,2503650,2504320,2504906,2505374,2505712,2506044,2506375,2506722,2507043	2503384,2503715,2504460,2505004,2505432,2505799,2506216,2506441,2506796,2507482	
chr14	2507505	2513580	2508403	2513455	-	CSV12	Cre14.g625251.t1.2		2513319,2512818,2512121,2507505	2513580,2513023,2512639,2511778	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr14	2513633	2522830	2515011	2522682	-	CAX3	Cre14.g625300.t1.1		2522461,2522318,2521939,2521587,2520936,2520317,2519936,2519611,2518152,2517466,2516940,2516607,2516111,2515514,2513633	2522830,2522392,2522068,2521709,2521025,2520470,2519950,2519749,2519070,2517742,2516996,2516734,2516174,2515601,2515165	pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein related to AtCAX10 [PMID: 15710683]. This is a family of sodium/calcium exchanger integral membrane proteins.
chr14	2522939	2529360	2523256	2529236	-	Cre14.g625350.t1.1	Cre14.g625350.t1.1		2529041,2528596,2527965,2527266,2526945,2526537,2526196,2525824,2525421,2524708,2524257,2523627,2522939	2529360,2528713,2528053,2527426,2526992,2526678,2526300,2525934,2525532,2524815,2524381,2523773,2523340	Putative integral membrane protein; Predicted to be an efflux pump. No Synonyms. Swissprot Gene name F25P22.12. Present in several organisms including Arabidopsis thaliana
chr14	2529985	2535271	2530210	2534859	+	RPT1	Cre14.g625400.t1.1		2529985,2530356,2530594,2531054,2531593,2532101,2532644,2533127,2533631,2533981,2534390,2534714	2530246,2530410,2530657,2531162,2531661,2532273,2532803,2533246,2533774,2534052,2534526,2535271	26S proteasome regulatory complex, base subcomplex, ATPase RPT1 (subunit 7)
chr14	2535275	2540560	2535854	2540508	-	VTE3	Cre14.g625450.t1.2		2540295,2540073,2539602,2539030,2538582,2538246,2537807,2537603,2537086,2536307,2535275	2540560,2540141,2539687,2539066,2538662,2538355,2537885,2537641,2537205,2536430,2535910	MPBQ/MSBQ methyltransferase (plant VTE3 type), chloroplast precursor (tocopherol methyltransferase) (vitamin E methyltransferase)
chr14	2535275	2540900	2535854	2540679	-	VTE3	Cre14.g625450.t2.1		2540667,2540073,2539602,2539030,2538582,2538246,2537807,2537603,2537086,2536307,2535275	2540900,2540141,2539687,2539066,2538662,2538355,2537885,2537641,2537205,2536430,2535910	MPBQ/MSBQ methyltransferase (plant VTE3 type), chloroplast precursor (tocopherol methyltransferase) (vitamin E methyltransferase)
chr14	2541501	2544653	2542073	2544489	-	FAP254	Cre14.g625500.t1.1		2544375,2544158,2543815,2543316,2543097,2542788,2541501	2544653,2544256,2544003,2543677,2543180,2542935,2542514	Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome, where it was designated FAP254.  Phosphorylation characterized by Boesger et al. (29) [PMID: 19429781]
chr14	2541501	2544653	2542507	2544489	-	FAP254	Cre14.g625500.t2.1		2544375,2544158,2543815,2543316,2543097,2542788,2541501	2544653,2544256,2544003,2543677,2543180,2542935,2542519	Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome, where it was designated FAP254.  Phosphorylation characterized by Boesger et al. (29) [PMID: 19429781]
chr14	2544786	2546297	2544919	2546162	+	FAP410	Cre14.g625550.t1.2		2544786,2545323,2545624	2545036,2545408,2546297	similar to human C21orf2/CFAP410 which is mutated in recessive early-onset retinal dystrophy with macular staphyloma and localizes to the photoreceptor primary cilium; Ciliary level increases during disassembly
chr14	2544791	2546618	2544919	2546162	+	FAP410	Cre14.g625550.t2.1		2544791,2545323,2545624	2545036,2545408,2546618	similar to human C21orf2/CFAP410 which is mutated in recessive early-onset retinal dystrophy with macular staphyloma and localizes to the photoreceptor primary cilium; Ciliary level increases during disassembly
chr14	2546299	2554995	2547254	2554649	-	FHL2	Cre14.g625600.t1.1		2554789,2553293,2552686,2551657,2551448,2550827,2550578,2550155,2548970,2548529,2546299	2554995,2554696,2552896,2552324,2551534,2551328,2550736,2550390,2550019,2548849,2548295	FtsH-like membrane ATPase/metalloprotease with PKD/REJ domain
chr14	2557447	2571765	2558048	2571393	-	FTSH11	Cre14.g625625.t1.1		2571523,2570673,2569845,2569333,2568642,2567609,2567001,2566417,2565969,2565435,2564407,2563835,2563299,2561952,2561349,2561089,2560727,2560094,2559626,2559310,2557447	2571765,2571394,2569983,2569499,2568815,2567761,2567192,2566476,2566089,2565510,2564557,2563924,2563325,2562039,2561458,2561141,2560844,2560234,2559766,2559372,2558864	mitochondrial FtsH protease; inner-membrane metalloprotease (M41) exposing catalytic sites to the intermembrane space (i-AAA protease); probably in complex with FTSH4
chr14	2572208	2574257	2572353	2573403	+	Cre14.g625650.t1.2	Cre14.g625650.t1.2		2572208,2572536,2573403	2572360,2573050,2574257	
chr14	2576510	2582905	2577078	2582712	-	TIC22	Cre14.g625750.t1.2		2582586,2582357,2581090,2580395,2580012,2579457,2579126,2578943,2578334,2578044,2576510	2582905,2582503,2581152,2580502,2580065,2579546,2579131,2579008,2578399,2578184,2577210	Similar to Tic22 from Arabidopsis thaliana (AAO63837) and Pisum sativum (AAC64606); alignment with these sequences implies mature protein starts at residue L94; sequence alignment implies localisation within the intermembrane space at the periphery of the inner membrane and interactions with Tic20 and Tic110; TargetP prediction is ambiguous (other; confidence: 4). [PMID: 15242632; PMID: 11910011; PMID: 9817756; PMID: 16092526]
chr14	2576510	2582905	2577078	2582712	-	TIC22	Cre14.g625750.t2.1		2582586,2582357,2581090,2580395,2580012,2579457,2578943,2578334,2578044,2576510	2582905,2582503,2581152,2580502,2580065,2579546,2579008,2578399,2578184,2577210	Similar to Tic22 from Arabidopsis thaliana (AAO63837) and Pisum sativum (AAC64606); alignment with these sequences implies mature protein starts at residue L94; sequence alignment implies localisation within the intermembrane space at the periphery of the inner membrane and interactions with Tic20 and Tic110; TargetP prediction is ambiguous (other; confidence: 4). [PMID: 15242632; PMID: 11910011; PMID: 9817756; PMID: 16092526]
chr14	2583076	2594867	2583181	2591988	+	Cre14.g625802.t1.1	Cre14.g625802.t1.1		2583076,2584568,2584937,2585573,2586080,2586531,2586857,2587418,2587972,2588663,2589219,2589653,2590128,2590671,2591090,2591543,2591958	2584237,2584714,2585047,2585686,2586190,2586624,2586939,2587531,2588166,2588770,2589365,2589706,2590217,2590733,2591158,2591710,2594867	
chr14	2595078	2604975	2596116	2604699	-	MMP32	Cre14.g625850.t1.1		2604689,2604522,2604013,2603492,2603053,2602564,2602079,2601522,2601122,2600760,2600346,2599931,2599566,2599211,2598737,2598353,2598018,2597369,2596893,2595078	2604975,2604605,2604188,2603573,2603309,2602696,2602167,2601673,2601236,2600822,2600426,2599981,2599632,2599269,2598832,2598471,2598075,2597511,2597043,2596545	Matrix metalloproteinase belonging to the M11 peptidase family
chr14	2605040	2608585	2605714	2608493	-	Cre14.g625901.t1.1	Cre14.g625901.t1.1		2607320,2606862,2605040	2608585,2606974,2606195	
chr14	2608680	2616957	2608763	2616916	+	PAP4	Cre14.g625950.t1.1		2608680,2610377,2610931,2611376,2611696,2612975,2613501,2614112,2615563,2616248	2609614,2610488,2611011,2611436,2612069,2613098,2613742,2614312,2615716,2616957	Non-canonical poly(A) polymerase (ncPAP) with PAP head domain; lacks the Glu residues typical of tRNA CCA-transferases, replaced by Ser546; may therefore serve in transcript tailing, lile E. coli homolog PAP1; has orthologs in Chlorophyceae and in Prasinophyceae, not Trebouxiophyceae; N-terminus targets GFP to mitochondria when expressed in tomato protoplasts; model truncated by 5 AA at N-terminus, compared to ACA13297.1
chr14	2616960	2625295	2618237	2625074	-	Cre14.g626000.t1.1	Cre14.g626000.t1.1		2625231,2625043,2624678,2624420,2624154,2623859,2623172,2622818,2622413,2620823,2619806,2619384,2618937,2616960	2625295,2625131,2624753,2624480,2624191,2623898,2623249,2622899,2622462,2622184,2619938,2619463,2619059,2618492	
chr14	2626080	2632745	2627767	2632172	-	Cre14.g626100.t1.1	Cre14.g626100.t1.1		2632016,2626080	2632745,2630803	
chr14	2633794	2637715	2634360	2637441	-	Cre14.g626150.t1.2	Cre14.g626150.t1.2		2637261,2633794	2637715,2636919	
chr14	2638240	2643178	2638391	2642660	+	PFH7	Cre14.g626200.t1.1		2638240,2638601,2638941,2639402,2640217,2640480,2641071,2641548,2642078,2642545	2638502,2638652,2639087,2639518,2640229,2640546,2641097,2641629,2642180,2643178	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate
chr14	2643180	2645365	2644142	2645339	-	Cre14.g626250.t1.2	Cre14.g626250.t1.2		2645303,2645186,2645041,2644861,2644584,2643180	2645365,2645230,2645118,2644880,2644638,2644157	
chr14	2645460	2648005	2647069	2647844	-	Cre14.g626300.t1.2	Cre14.g626300.t1.2		2647951,2647787,2647480,2645460	2648005,2647864,2647499,2647184	
chr14	2648106	2651635	2648372	2651473	-	Cre14.g626350.t1.2	Cre14.g626350.t1.2		2651397,2651070,2650524,2649595,2648986,2648106	2651635,2651203,2650601,2649696,2649072,2648672	
chr14	2651670	2659603	2652470	2659535	-	CYP743C1	Cre14.g626400.t1.2		2659469,2659299,2659043,2658519,2658131,2657794,2657230,2656880,2656350,2655686,2655320,2654667,2654283,2653896,2653319,2651670	2659603,2659353,2659125,2658598,2658238,2657850,2657427,2657020,2656488,2656022,2655381,2654816,2654372,2653985,2653453,2652701	Cytochrome P450; the CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences)
chr14	2659650	2662665	2660181	2662602	-	Cre14.g626433.t1.1	Cre14.g626433.t1.1		2662504,2662094,2660781,2659650	2662665,2662166,2661793,2660389	
chr14	2662730	2674827	2664101	2674611	-	Cre14.g626466.t1.1	Cre14.g626466.t1.1		2674585,2674293,2673502,2672342,2671927,2670931,2670347,2670032,2669366,2668881,2668414,2668055,2667190,2665491,2662730	2674827,2674436,2673586,2672431,2671986,2670993,2670474,2670137,2669524,2669017,2668468,2668194,2667298,2665690,2665269	
chr14	2674941	2682387	2675085	2681473	+	Cre14.g626500.t1.2	Cre14.g626500.t1.2		2674941,2675585,2676136,2676600,2677115,2677556,2678124,2678832,2679284,2679783,2680223,2680779,2681411	2675284,2675785,2676466,2676738,2677252,2677723,2678283,2678988,2679359,2679827,2680331,2680898,2682387	
chr14	2683540	2689015	2684470	2688980	-	Cre14.g626550.t1.1	Cre14.g626550.t1.1		2683540	2689015	
chr14	2689939	2693175	2690396	2693060	-	Cre14.g626576.t1.1	Cre14.g626576.t1.1		2693023,2692796,2692598,2692122,2691926,2689939	2693175,2692845,2692646,2692179,2691974,2690396	
chr14	2693276	2698877	2693582	2697690	+	Cre14.g626600.t1.1	Cre14.g626600.t1.1		2693276	2698877	
chr14	2693276	2698877	2693582	2697983	+	Cre14.g626600.t2.1	Cre14.g626600.t2.1		2693276,2697983	2697868,2698877	
chr14	2698950	2714805	2699891	2714745	-	Cre14.g626634.t1.1	Cre14.g626634.t1.1		2714577,2714108,2713743,2713130,2712141,2709643,2708570,2707526,2707049,2706750,2706073,2705176,2704366,2703429,2703013,2702397,2701625,2701259,2700527,2698950	2714805,2714260,2713826,2713231,2712761,2711868,2709071,2707684,2707177,2706799,2706200,2705279,2704519,2703817,2703089,2702783,2701981,2701377,2700839,2700044	
chr14	2714930	2716515	2714984	2716115	-	Cre14.g626667.t1.1	Cre14.g626667.t1.1		2715991,2715356,2714930	2716515,2715417,2715059	
chr14	2717256	2718504	2717724	2718318	+	PETF	Cre14.g626700.t1.2		2717256,2718114	2717901,2718504	Apoferredoxin; [2Fe-2S] iron-sulfur protein involved in photosynthetic electron transfer, chloroplast localization [PMID: 16656453]
chr14	2720049	2723518	2720619	2723462	-	Cre14.g626750.t1.2	Cre14.g626750.t1.2		2723381,2723255,2722525,2722136,2721538,2721081,2720049	2723518,2723286,2722615,2722220,2721668,2721161,2720697	
chr14	2723669	2732520	2723948	2732040	+	OPR64	Cre14.g626800.t1.1		2723669,2728449,2730161,2731710	2728229,2728535,2731492,2732520	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr14	2732669	2736860	2732855	2736080	+	PMM	Cre14.g626900.t1.2		2732669,2733015,2733154,2733546,2734425,2735094,2735571,2735975	2732918,2733059,2733220,2733658,2734543,2735238,2735648,2736860	Involved in N-glycosylation
chr14	2736873	2739198	2737236	2738709	-	NIC1	Cre14.g626950.t1.1		2739107,2738664,2736873	2739198,2738902,2738484	Putative locus for NIC1 genetic marker
chr14	2739249	2746028	2740589	2745552	-	Cre14.g627000.t1.1	Cre14.g627000.t1.1		2745889,2745108,2744549,2742226,2741735,2741067,2739249	2746028,2745594,2744795,2744196,2741797,2741338,2740664	
chr14	2746129	2750490	2746368	2749144	+	Cre14.g627050.t1.2	Cre14.g627050.t1.2		2746129,2746609,2746950,2747437,2748427,2749080	2746470,2746713,2747030,2747570,2748522,2750490	
chr14	2750493	2759068	2751545	2758568	-	Cre14.g627100.t1.2	Cre14.g627100.t1.2		2757755,2756303,2753873,2753577,2752975,2752048,2750493	2759068,2757547,2755169,2753707,2753362,2752463,2751893	
chr14	2759219	2767480	2759466	2767105	+	Cre14.g627150.t1.1	Cre14.g627150.t1.1		2759219,2760554,2761264,2761837,2762270,2763193,2763546,2764081,2764394,2764855,2765510,2766199,2766606,2766881,2767105	2760180,2760721,2761400,2761894,2762823,2763349,2763634,2764197,2764481,2764923,2765833,2766408,2766674,2766967,2767480	
chr14	2759219	2767480	2759466	2766953	+	Cre14.g627150.t2.1	Cre14.g627150.t2.1		2759219,2760554,2761264,2761837,2762270,2763193,2763546,2764081,2764394,2764855,2765510,2766199,2766606,2766881	2760180,2760721,2761400,2761894,2762823,2763349,2763634,2764197,2764481,2764923,2765833,2766408,2766674,2767480	
chr14	2771129	2779941	2771758	2777977	+	Cre14.g627200.t1.1	Cre14.g627200.t1.1		2771129,2772836,2776219	2772361,2775787,2779941	
chr14	2780173	2787618	2780794	2787486	-	Cre14.g627251.t1.1	Cre14.g627251.t1.1		2787408,2786935,2786730,2785966,2783567,2783144,2782057,2781326,2780173	2787618,2787228,2786848,2786541,2785478,2783203,2782857,2781484,2780950	
chr14	2788819	2795451	2789149	2794227	+	Cre14.g627300.t1.1	Cre14.g627300.t1.1		2788819,2790025,2792427	2789737,2791998,2795451	
chr14	2795800	2807668	2797611	2807578	-	Cre14.g627350.t1.1	Cre14.g627350.t1.1		2807499,2807349,2806829,2805060,2804681,2803307,2802592,2800485,2799998,2798546,2798049,2795800	2807668,2807423,2806952,2805106,2804772,2804377,2803067,2802402,2800057,2799334,2798207,2797767	
chr14	2807794	2811298	2809043	2811197	-	Cre14.g627400.t1.1	Cre14.g627400.t1.1		2811161,2807794	2811298,2810843	
chr14	2812495	2817928	2813731	2817769	-	Cre14.g627411.t1.1	Cre14.g627411.t1.1		2816533,2814801,2812495	2817928,2816311,2814692	
chr14	2818003	2823238	2818336	2823147	-	Cre14.g627422.t1.1	Cre14.g627422.t1.1		2823092,2822661,2822422,2821395,2820959,2820529,2819926,2819627,2819360,2818875,2818003	2823238,2822686,2822529,2821502,2821012,2820729,2820246,2819659,2819476,2819235,2818336	
chr14	2823433	2831548	2824262	2831454	-	Cre14.g627433.t1.1	Cre14.g627433.t1.1		2831373,2830437,2830068,2829487,2829044,2828486,2828034,2827462,2826979,2826632,2824816,2823433	2831548,2830502,2830119,2829646,2829152,2828695,2828132,2827623,2827011,2826777,2825024,2824552	May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	2831659	2832520	2831823	2832421	+	Cre14.g627444.t1.1	Cre14.g627444.t1.1		2831659,2832418	2832171,2832520	
chr14	2834083	2837188	2834628	2837047	-	Cre14.g627455.t1.1	Cre14.g627455.t1.1		2836949,2836539,2835226,2834083	2837188,2836611,2836238,2834836	
chr14	2837243	2838118	2837536	2837756	-	Cre14.g627466.t1.1	Cre14.g627466.t1.1		2837243	2838118	
chr14	2839839	2844340	2839873	2844291	+	Cre14.g627477.t1.1	Cre14.g627477.t1.1		2839839,2840209,2840824,2842523,2843057,2843287,2843607,2843932,2844268	2839955,2840339,2841417,2842783,2843133,2843437,2843753,2844148,2844340	
chr14	2890839	2895070	2891296	2895039	+	Cre14.g627488.t1.1	Cre14.g627488.t1.1		2890839,2891270,2891643,2892060,2893423,2893809,2894439,2894806,2895013	2891003,2891398,2891722,2892165,2893506,2893913,2894480,2894947,2895070	May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	2902177	2911888	2902230	2910663	+	Cre14.g627500.t1.2	Cre14.g627500.t1.2		2902177,2902822,2903726,2903978,2904544,2905466,2905839,2906241,2906699,2906948,2908459,2909154,2909563,2909942,2910462	2902512,2903481,2903791,2904301,2905275,2905705,2906129,2906399,2906788,2907841,2908599,2909272,2909650,2910232,2911888	
chr14	2911897	2938186	2912485	2938006	-	DHC7	Cre14.g627576.t1.1		2937871,2937658,2937415,2937035,2936469,2935744,2935187,2934587,2934093,2933457,2932936,2932370,2931605,2930979,2930358,2929891,2929322,2929044,2928644,2927944,2927506,2927039,2926082,2925686,2925253,2923846,2923128,2922401,2921885,2921238,2920895,2920577,2919598,2919129,2918526,2918148,2917764,2917021,2916141,2914265,2911897	2938186,2937753,2937538,2937143,2936568,2935840,2935443,2934699,2934327,2933867,2933067,2932550,2931966,2931246,2930536,2930067,2929513,2929142,2928736,2928402,2927692,2927220,2926636,2925832,2925418,2924831,2923496,2922702,2922151,2921408,2921030,2920700,2920256,2919407,2918753,2918296,2917908,2917551,2916701,2915783,2913579	
chr14	2938287	2947358	2938547	2946856	+	FAP392	Cre14.g627650.t1.1		2938287,2938685,2939004,2939922,2940563,2941066,2941337,2941775,2943483,2943986,2944724,2945716	2938556,2938776,2939085,2940095,2940691,2941158,2941471,2941999,2943647,2944154,2944980,2947358	
chr14	2948285	2952796	2948905	2952725	-	Cre14.g627700.t1.1	Cre14.g627700.t1.1		2948285	2952796	
chr14	2952931	2953986	2953445	2953890	-	Cre14.g627726.t1.1	Cre14.g627726.t1.1		2953872,2953646,2952931	2953986,2953750,2953502	
chr14	2954561	2959736	2955892	2959706	-	Cre14.g627750.t1.1	Cre14.g627750.t1.1		2954561	2959736	
chr14	2965461	2970936	2966758	2970671	-	Cre14.g627788.t1.1	Cre14.g627788.t1.1		2965461	2970936	
chr14	2971001	2973676	2971748	2973647	-	Cre14.g627800.t1.2	Cre14.g627800.t1.2		2973429,2973161,2972764,2972254,2971001	2973676,2973371,2972863,2972396,2971853	
chr14	2973741	2978336	2974538	2978198	-	Cre14.g627850.t1.2	Cre14.g627850.t1.2		2978082,2976844,2976512,2975948,2975598,2974968,2973741	2978336,2977162,2976577,2976025,2975711,2975030,2974712	
chr14	2978437	2979349	2978650	2978939	+	Cre14.g627900.t1.2	Cre14.g627900.t1.2		2978437	2979349	Putative splicing factor, related to splicing factor 3B subunit 1.  SF3b1 is a 1 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b1 a
chr14	2979741	2984286	2980120	2984193	-	Cre14.g627917.t1.1	Cre14.g627917.t1.1		2984100,2983560,2982249,2981886,2981524,2980876,2979741	2984286,2983628,2982883,2982006,2981595,2980959,2980438	
chr14	2979741	2981656	2980120	2981629	-	Cre14.g627917.t2.1	Cre14.g627917.t2.1		2981524,2980876,2979741	2981656,2980959,2980438	
chr14	2984671	2988306	2985384	2988248	-	Cre14.g627950.t1.2	Cre14.g627950.t1.2		2988050,2987441,2986669,2985810,2984671	2988306,2987530,2986836,2986332,2985563	Similar to steroid 5-alpha-reductase
chr14	2988361	2992906	2988562	2992868	-	Cre14.g628000.t1.2	Cre14.g628000.t1.2		2992548,2992014,2991622,2990722,2990247,2989909,2989321,2988361	2992906,2992154,2991673,2991336,2990324,2990060,2989591,2988913	
chr14	2993007	3006366	2993222	3005513	+	COG1	Cre14.g628050.t1.2		2993007,2993585,2993948,2994666,2995158,2995775,2996221,2997030,2997774,2998661,2999186,2999753,3000112,3001636,3002118,3002555,3003116,3003753,3004130,3005007,3005469	2993366,2993658,2994029,2994759,2995359,2996009,2996670,2997488,2998223,2998918,2999259,2999822,3000198,3001899,3002268,3002952,3003177,3003870,3004597,3005142,3006366	Expressed Protein. Similar to COG1, component of oligomeric golgi complex 1, involved in vesicle tethering and other Golgi functions
chr14	3007369	3013387	3007890	3011484	+	Cre14.g628100.t1.2	Cre14.g628100.t1.2		3007369,3007882,3008145,3008351,3008870,3009576,3010013,3010781,3011169,3011463	3007560,3008071,3008247,3008585,3009239,3009814,3010355,3010893,3011204,3013387	putative splicing factor, similar to hnRNP-F
chr14	3013946	3019301	3014087	3018597	+	Cre14.g628150.t1.1	Cre14.g628150.t1.1		3013946,3014440,3014745,3014935,3015861,3016201,3016687,3017124,3017436,3017704,3017928,3018195	3014277,3014481,3014756,3015129,3015982,3016368,3016712,3017289,3017597,3017787,3018032,3019301	
chr14	3019956	3030506	3020412	3028389	+	Cre14.g628200.t1.1	Cre14.g628200.t1.1		3019956,3020610,3020900,3021205,3021571,3022026,3022463,3022859,3023564,3024002,3025004,3025499,3025752,3026222,3026649,3026998,3027187,3027494,3027847,3028110	3020550,3020752,3021035,3021379,3021797,3022266,3022557,3023323,3023641,3024731,3025147,3025517,3025944,3026393,3026747,3027047,3027332,3027600,3027905,3030506	
chr14	3030634	3041845	3032809	3041692	-	Cre14.g628237.t1.1	Cre14.g628237.t1.1		3041548,3041070,3040578,3039987,3039496,3038948,3038649,3037866,3036902,3036187,3035814,3035457,3035063,3034623,3034290,3034086,3033736,3033468,3033239,3030634	3041845,3041209,3040917,3040296,3039728,3039293,3038770,3038462,3036982,3036772,3036128,3035600,3035289,3034761,3034400,3034129,3033881,3033574,3033297,3033082	
chr14	3037590	3041845	3037844	3041692	-	Cre14.g628237.t3.1	Cre14.g628237.t3.1		3041548,3041070,3040578,3039987,3039496,3038948,3038649,3037590	3041845,3041209,3040917,3040296,3039728,3039293,3038770,3038462	
chr14	3030634	3037535	3032809	3037281	-	Cre14.g628237.t2.1	Cre14.g628237.t2.1		3037263,3036902,3036187,3035814,3035457,3035063,3034623,3034290,3034086,3033736,3033468,3033239,3030634	3037535,3036982,3036772,3036128,3035600,3035289,3034761,3034400,3034129,3033881,3033574,3033297,3033082	
chr14	3041901	3045038	3042434	3044937	-	HSLV1	Cre14.g628350.t1.2		3044867,3044629,3044234,3043942,3043706,3043507,3043003,3041901	3045038,3044753,3044339,3044004,3043776,3043591,3043083,3042580	peptidase subunit of ATP-dependent hslUV protease; probably mitochondrial
chr14	3045156	3049537	3045216	3049435	+	TSA3	Cre14.g628400.t1.2		3045156,3045531,3045891,3046177,3046561,3046980,3047351,3047603,3047969,3048289,3048516,3049082,3049347	3045302,3045724,3045973,3046253,3046738,3047056,3047429,3047663,3048138,3048323,3048872,3049186,3049537	
chr14	3049613	3052524	3049720	3052024	+	CYN48	Cre14.g628450.t1.1		3049613,3049970,3050264,3050588,3050877,3051233,3051647,3051949	3049841,3050037,3050357,3050610,3050983,3051329,3051745,3052524	Peptidyl-prolyl cis-transisomerase, cyclophilin type; most similar to CYN48-CYN53 and bacterial cyclophilins; alternative splicing
chr14	3052646	3055285	3052690	3055109	+	CPLD66	Cre14.g628500.t1.1		3052646,3052944,3053159,3053404,3053744,3054115,3054350,3054581	3052884,3053045,3053240,3053485,3053783,3054227,3054396,3055285	
chr14	3056600	3068485	3057941	3068241	-	CYG3	Cre14.g628533.t1.1		3067162,3066977,3066408,3064726,3060400,3060124,3059350,3058945,3058486,3058273,3056600	3068485,3067007,3066776,3065507,3064429,3060220,3059645,3059164,3058730,3058416,3058154	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	3068686	3070895	3069025	3070641	-	Cre14.g628566.t1.1	Cre14.g628566.t1.1		3070429,3069418,3068686	3070895,3069775,3069037	
chr14	3078570	3094745	3079946	3094397	-	Cre14.g628600.t1.1	Cre14.g628600.t1.1		3094185,3093633,3092865,3092066,3091768,3091352,3090697,3090287,3089777,3089609,3088780,3088402,3088025,3087638,3087270,3083300,3082969,3082481,3081738,3081250,3080673,3078570	3094745,3093900,3092972,3092420,3091884,3091618,3091058,3090388,3090007,3089679,3089333,3088532,3088162,3087718,3087374,3087079,3083061,3082724,3082297,3081373,3080827,3080381	
chr14	3096140	3101765	3096380	3101722	-	MME4	Cre14.g628650.t1.2		3101520,3101114,3100738,3100344,3099791,3099502,3099193,3098751,3098426,3097812,3097380,3096140	3101765,3101254,3100813,3100446,3099997,3099560,3099244,3098844,3098496,3098104,3097539,3097205	Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); same scaffold as MME2 & MME3; possibly plastid targeted, based on N-terminal extension (although predicted mitochondrial by Target-P) and homology
chr14	3102256	3121730	3102589	3121133	+	Cre14.g628702.t1.1	Cre14.g628702.t1.1		3102256,3103029,3103768,3104382,3105098,3105438,3105976,3106296,3106838,3107530,3107907,3108305,3108674,3109544,3110440,3110792,3111569,3112042,3112433,3112675,3113145,3114222,3114992,3115592,3116008,3116456,3116996,3117564,3118890,3119975,3120572	3102774,3103131,3103909,3104456,3105221,3105568,3106121,3106539,3107269,3107619,3108100,3108384,3109172,3110160,3110562,3110960,3111753,3112147,3112501,3112821,3113599,3114784,3115262,3115681,3116122,3116736,3117386,3117959,3119655,3120255,3121730	
chr14	3124036	3129347	3124174	3129246	+	Cre14.g628752.t1.1	Cre14.g628752.t1.1		3124036,3126648,3127025,3127477,3128276,3128741	3126181,3126811,3127117,3127648,3128442,3129347	
chr14	3129396	3143158	3129698	3142250	+	Cre14.g628800.t1.1	Cre14.g628800.t1.1		3129396,3132558,3133294,3133824,3134069,3134465,3134873,3135236,3135518,3135863,3136196,3136778,3137279,3137622,3138232,3138686,3139564,3140086,3140492,3141052,3141713	3132221,3132749,3133365,3133886,3134101,3134586,3134951,3135272,3135645,3135958,3136289,3136952,3137377,3137844,3138298,3138795,3139705,3140153,3140755,3141291,3143158	
chr14	3143316	3157885	3146021	3156980	-	CYG26	Cre14.g628850.t1.1		3157086,3156929,3156488,3155157,3154125,3148170,3147592,3147074,3146726,3146370,3143316	3157885,3157002,3156652,3156088,3154860,3153902,3147903,3147266,3146961,3146513,3146234	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	3159736	3163945	3160079	3162638	+	Cre14.g628900.t1.2	Cre14.g628900.t1.2		3159736,3160427	3160157,3163945	
chr14	3164006	3171276	3164384	3169912	+	Cre14.g628950.t1.1	Cre14.g628950.t1.1		3164006,3164740	3164558,3171276	
chr14	3171855	3179807	3171999	3177721	+	AXT1	Cre14.g629000.t1.2		3171855,3172332,3173703,3174359,3175006,3175480,3175788,3176305,3176665,3177117,3177538	3172210,3172605,3174108,3174525,3175279,3175551,3175923,3176386,3176833,3177254,3179807	GT77 family protein, Conserved in the Green Lineage and Diatoms
chr14	3179810	3183615	3180629	3183308	-	Cre14.g629050.t1.2	Cre14.g629050.t1.2		3183130,3182656,3182385,3182051,3181717,3181402,3181009,3179810	3183615,3182754,3182434,3182128,3181786,3181501,3181046,3180754	
chr14	3186636	3189677	3186731	3189451	+	Cre14.g629102.t1.1	Cre14.g629102.t1.1		3186636,3188426,3188653,3188898,3189451	3186777,3188478,3188711,3188983,3189677	
chr14	3204397	3216212	3205624	3215319	-	CYG4	Cre14.g629150.t1.1		3215679,3215229,3214286,3214019,3213554,3212612,3207275,3206801,3206328,3206101,3204397	3216212,3215397,3215049,3214049,3213820,3213123,3212402,3207017,3206572,3206244,3205837	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	3216287	3221822	3217376	3221622	-	FAP98	Cre14.g629200.t1.2		3221565,3221165,3220817,3220521,3220110,3219619,3219177,3217970,3217699,3216287	3221822,3221329,3220978,3220637,3220223,3219768,3219414,3218414,3217772,3217423	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr14	3222708	3232162	3223942	3232121	-	CYG25	Cre14.g629241.t1.1		3232032,3231432,3230116,3226083,3225829,3225200,3224865,3224517,3224290,3222708	3232162,3231771,3231249,3229940,3225940,3225456,3225057,3224752,3224433,3224155	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr14	3232237	3237172	3233044	3237098	-	Cre14.g629283.t1.2	Cre14.g629283.t1.2		3236977,3235546,3235236,3234603,3233918,3232237	3237172,3236882,3235320,3234866,3234354,3233593	
chr14	3237273	3244277	3237352	3243739	+	Cre14.g629300.t1.1	Cre14.g629300.t1.1		3237273,3237697,3238052,3238372,3239023,3239413,3240097,3240495,3241932	3237517,3237828,3238105,3238598,3239185,3239580,3240264,3241261,3244277	
chr14	3245143	3252226	3245428	3251118	+	Cre14.g629400.t1.1	Cre14.g629400.t1.1		3245143,3245808,3247669,3248159,3248656,3248954,3249394,3250956	3245490,3247161,3247768,3248286,3248706,3249052,3250620,3252226	
chr14	3253483	3258174	3253605	3257323	+	Cre14.g629429.t1.2	Cre14.g629429.t1.2		3253483	3258174	
chr14	3258223	3262421	3258489	3261748	+	CSB58	Cre14.g629464.t1.1		3258223,3258718,3259430,3261399,3261625	3258541,3259334,3261280,3261509,3262421	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr14	3262821	3267152	3264053	3266737	-	Cre14.g629500.t1.2	Cre14.g629500.t1.2		3266647,3265884,3265443,3264880,3264532,3262821	3267152,3266066,3265562,3264992,3264616,3264155	
chr14	3267253	3273444	3267313	3272919	+	Cre14.g629550.t1.2	Cre14.g629550.t1.2		3267253,3267854,3268704,3269397,3269720,3270246,3270903,3271902,3272104,3272742	3267451,3267970,3269013,3269444,3269781,3270357,3270976,3271946,3272187,3273444	
chr14	3274463	3278094	3274728	3277227	+	Cre14.g629600.t1.1	Cre14.g629600.t1.1		3274463,3274951,3275536,3275967,3276379,3276780	3274738,3275165,3275624,3276045,3276468,3278094	
chr14	3278097	3283422	3279828	3283304	-	NIK1	Cre14.g629650.t1.1		3282925,3282691,3282017,3280960,3280732,3280319,3278097	3283422,3282773,3282136,3281134,3280803,3280462,3279968	related to plant putative high affinity nickel transporter family
chr14	3283523	3290927	3284293	3289436	+	MME3	Cre14.g629700.t1.1		3283523,3284264,3284899,3285280,3285729,3286071,3286524,3286780,3286993,3287410,3288019,3288501,3288868,3289250	3284061,3284540,3285007,3285387,3285831,3286277,3286582,3286831,3287086,3287773,3288178,3288568,3288982,3290927	Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); direct repeat with MME2; targeting uncertain, but predicted cytosolic by homology
chr14	3290993	3297386	3291490	3296706	+	MME2	Cre14.g629750.t2.1		3290993,3291689,3292191,3293398,3293707,3294238,3294435,3294615,3294952,3295309,3295967,3296445	3291530,3291801,3292291,3293500,3293916,3294296,3294486,3294708,3295022,3295503,3296224,3297386	Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); direct repeat with MME3; likely cytosolic based on lack of predicted N-terminal targeting sequence
chr14	3290983	3297386	3291669	3296706	+	MME2	Cre14.g629750.t1.1		3290983,3292191,3293398,3293707,3294238,3294435,3294615,3294952,3295309,3295967,3296445	3291801,3292291,3293500,3293916,3294296,3294486,3294708,3295022,3295503,3296224,3297386	Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); direct repeat with MME3; likely cytosolic based on lack of predicted N-terminal targeting sequence
chr14	3298393	3299712	3298668	3299527	+	Cre14.g629800.t1.2	Cre14.g629800.t1.2		3298393	3299712	
chr14	3299917	3317992	3300673	3317895	-	Cre14.g629840.t1.1	Cre14.g629840.t1.1		3317889,3317302,3316909,3316484,3316028,3315636,3315261,3313756,3312359,3307985,3306974,3306597,3305655,3304978,3304618,3304314,3303493,3303080,3302773,3299917	3317992,3317460,3316917,3316534,3316096,3315713,3315308,3314195,3313418,3312152,3307855,3306682,3306011,3305364,3304686,3304376,3303971,3303134,3302932,3302544	
chr14	3318281	3325682	3319068	3325432	-	Cre14.g629880.t1.1	Cre14.g629880.t1.1		3325301,3324526,3323845,3322832,3322598,3321758,3320358,3319242,3318281	3325682,3324964,3324184,3323127,3322634,3322338,3321439,3319867,3319068	
chr14	3325881	3330922	3326895	3330251	-	Cre14.g629920.t1.1	Cre14.g629920.t1.1		3330176,3329559,3329303,3328933,3328184,3325881	3330922,3329656,3329349,3329043,3328278,3327906	
chr14	3331597	3338882	3332350	3338482	-	Cre14.g629960.t1.1	Cre14.g629960.t1.1		3338406,3337950,3337584,3336577,3335466,3335192,3333394,3331597	3338882,3338022,3337758,3336684,3335549,3335270,3334979,3333154	
chr14	3339458	3343312	3339774	3343080	-	KIR2	Cre14.g630000.t1.2		3342866,3342275,3341786,3341243,3340829,3340449,3339458	3343312,3342337,3341865,3341284,3340918,3340523,3339834	Related to a series of bacterial genes among which is a putative ketosteroid isomerase-related protein of Ralstonia; however, it is impossible to find a similarity with the well-characterized delta5-3-ketosteroid isomerase of Pseudomonas putida or Comamonas testosteroni, so this may be a case of erroneous annotation in Ralstonia that spread into COG; is probably targeted to the thylakoid lumen (based on alignment and RR motif), like the related gene KIR2
chr14	3344333	3350834	3344793	3350244	+	Cre14.g630050.t1.1	Cre14.g630050.t1.1		3344333,3345046,3345317,3345931,3346553,3346740,3347317,3348217	3344946,3345168,3345662,3346472,3346627,3347169,3348126,3350834	
chr14	3351679	3355534	3354292	3354950	-	RPL13	Cre14.g630100.t1.2		3355112,3351679	3355534,3354986	Cytosolic 60S large ribosomal subunit protein L13
chr14	3355589	3358904	3357433	3358760	-	Cre14.g630125.t1.1	Cre14.g630125.t1.1		3358657,3358166,3358011,3355589	3358904,3358429,3358076,3357666	
chr14	3358959	3371614	3360104	3371395	-	Cre14.g630150.t1.1	Cre14.g630150.t1.1		3371335,3371063,3369775,3367575,3366781,3366330,3365641,3364146,3363395,3358959	3371614,3371125,3370420,3369401,3367133,3366374,3365841,3365270,3363895,3362816	
chr14	3371899	3380284	3372748	3380170	-	FAP312	Cre14.g630200.t1.2		3379750,3379116,3378151,3377649,3376811,3376005,3375685,3375571,3375163,3374456,3373911,3373300,3371899	3380284,3379336,3378250,3377753,3376885,3376183,3375777,3375615,3375265,3374742,3374002,3373398,3372879	
chr14	3371899	3380284	3372748	3380170	-	FAP312	Cre14.g630200.t2.1		3379750,3379116,3378151,3377649,3376811,3376005,3375685,3375163,3374456,3373911,3373300,3371899	3380284,3379336,3378250,3377753,3376885,3376183,3375777,3375265,3374742,3374002,3373398,3372879	
chr14	3380391	3382624	3380565	3382489	-	CYCR1	Cre14.g630250.t1.1		3382408,3382216,3381365,3380391	3382624,3382263,3382009,3381102	
chr14	3382745	3390536	3382857	3389863	+	Cre14.g630301.t1.1	Cre14.g630301.t1.1		3382745,3383539,3384951,3385439,3385851,3386377,3386945,3387622,3388394,3389052,3389527,3389797	3383253,3384514,3385069,3385544,3385954,3386529,3387275,3388061,3388735,3389198,3389649,3390536	
chr14	3390885	3393654	3391485	3393375	-	Cre14.g630350.t1.1	Cre14.g630350.t1.1		3392677,3392237,3391893,3390885	3393654,3392348,3391940,3391557	
chr14	3393765	3394636	3393881	3394206	+	Cre14.g630376.t1.1	Cre14.g630376.t1.1		3393765	3394636	
chr14	3394795	3399559	3395014	3398904	+	Cre14.g630400.t1.2	Cre14.g630400.t1.2		3394795,3395495,3396034,3396398,3397021,3397645,3398217,3398645	3395128,3395599,3396090,3396544,3397141,3397781,3398338,3399559	
chr14	3399742	3404434	3400684	3404426	-	Cre14.g630450.t1.1	Cre14.g630450.t1.1		3404376,3403987,3403422,3402571,3401890,3401408,3399742	3404434,3404117,3403513,3402630,3402321,3401731,3401092	
chr14	3404489	3409214	3405053	3409185	-	TIE2	Cre14.g630500.t1.2		3409118,3408990,3408498,3407010,3406575,3406240,3405896,3405438,3404489	3409214,3409049,3408575,3408002,3406659,3406318,3405949,3405593,3405137	
chr14	3409315	3417406	3409396	3416699	+	DEG1B	Cre14.g630550.t1.1		3409315,3411170,3411570,3411905,3412482,3412892,3413281,3413644,3414306,3416326,3416588	3410938,3411228,3411666,3411967,3412589,3412949,3413357,3413817,3414399,3416414,3417406	DegP-type protease, thylakoid lumen; one PDZ domain; similar to At DegP1
chr14	3417455	3423295	3417905	3422085	+	Cre14.g630600.t1.1	Cre14.g630600.t1.1		3417455	3423295	
chr14	3424295	3430586	3424530	3429673	+	Cre14.g630650.t1.2	Cre14.g630650.t1.2		3424295	3430586	
chr14	3430645	3438176	3430838	3436759	+	Cre14.g630700.t1.2	Cre14.g630700.t1.2		3430645,3430995,3431612,3432281,3433610,3433911,3434255,3434757,3436352	3430855,3431308,3431936,3432644,3433709,3434021,3434490,3435735,3438176	
chr14	3430645	3438676	3430838	3437732	+	Cre14.g630700.t2.1	Cre14.g630700.t2.1		3430645,3430995,3431612,3432281,3433610,3433911,3434255,3434757,3436352,3437196,3437732	3430855,3431308,3431936,3432644,3433709,3434021,3434490,3435735,3436758,3437603,3438676	
chr14	3438709	3457524	3439358	3457201	-	MAPKKK10	Cre14.g630750.t1.1		3456798,3456079,3454564,3453953,3452914,3452404,3451789,3451397,3450937,3450227,3449715,3449252,3447866,3446918,3446273,3445824,3445525,3444979,3444455,3442533,3441971,3441615,3441116,3438709	3457524,3456224,3455291,3454118,3452988,3452541,3451892,3451571,3451154,3450528,3449938,3449432,3449106,3447520,3446731,3446089,3445598,3445275,3444586,3443743,3442101,3441687,3441226,3440912	MAP3K1
chr14	3458172	3464204	3459299	3464166	-	Cre14.g630763.t1.1	Cre14.g630763.t1.1		3458172	3464204	
chr14	3468485	3471056	3468624	3470316	+	Cre14.g630775.t1.1	Cre14.g630775.t1.1		3468485,3468888,3469610,3470119	3468660,3469058,3469883,3471056	
chr14	3471195	3474156	3471424	3473630	+	Cre14.g630787.t1.1	Cre14.g630787.t1.1		3471195,3471675,3472525,3472859,3473433	3471532,3471845,3472665,3473120,3474156	
chr14	3474435	3477496	3474650	3477116	+	Cre14.g630799.t1.1	Cre14.g630799.t1.1		3474435,3474901,3475959,3476380,3476919	3474758,3475071,3476084,3476596,3477496	
chr14	3481685	3491887	3483316	3491060	+	Cre14.g630811.t1.1	Cre14.g630811.t1.1		3481685,3482847,3483316,3486510,3487936,3488207,3488569,3488795,3491060	3482220,3482897,3484063,3487778,3488066,3488390,3488631,3489572,3491887	
chr14	3491935	3495066	3492061	3494675	+	Cre14.g630823.t1.1	Cre14.g630823.t1.1		3491935,3492535,3493628,3494144	3492258,3493276,3493807,3495066	
chr14	3495069	3497364	3496090	3497308	-	Cre14.g630835.t1.1	Cre14.g630835.t1.1		3497275,3496495,3495069	3497364,3496587,3496234	May contain additional coding sequence PMID: 27175017
chr14	3497549	3502673	3497630	3502606	-	TAL2	Cre14.g630847.t1.1		3502300,3501768,3501456,3500959,3500431,3500045,3499650,3499273,3498827,3498035,3497549	3502673,3501844,3501544,3501065,3500469,3500173,3499732,3499322,3498909,3498127,3497774	EC 2.2.1.2; catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate; this enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways
chr14	3502805	3509456	3503272	3508724	+	HID1	Cre14.g630859.t1.1		3502805,3503899,3504527,3504772,3505475,3506127,3506451,3506935,3507392,3508601	3503338,3504211,3504576,3504831,3505643,3506191,3506528,3507099,3507514,3509456	This enzyme participates in valine, leucine and isoleucine degradation.
chr14	3509515	3515737	3509843	3514427	+	Cre14.g630871.t1.1	Cre14.g630871.t1.1		3509515,3509836,3510163,3510497,3510967,3511608,3511998,3512221,3512660,3513266,3513850,3514156	3509722,3509881,3510178,3510601,3510999,3511703,3512042,3512271,3512782,3513375,3513912,3515737	
chr14	3518299	3525838	3520254	3525332	-	Cre14.g630883.t1.1	Cre14.g630883.t1.1		3525702,3524763,3524207,3523657,3522890,3522184,3521798,3521367,3520722,3518299	3525838,3525404,3524285,3523734,3522950,3522283,3521906,3521483,3520886,3520455	May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	3525989	3536074	3526642	3535300	+	Cre14.g630895.t1.1	Cre14.g630895.t1.1		3525989,3526607,3527481,3528135,3529562,3530231,3531140,3531853,3532289,3532785,3533333,3534111	3526409,3527339,3527563,3528665,3529825,3530317,3531213,3532015,3532366,3532920,3533510,3536074	
chr14	3525989	3536074	3526642	3535300	+	Cre14.g630895.t2.1	Cre14.g630895.t2.1		3525989,3526567,3527481,3528135,3529562,3530231,3531140,3531853,3532289,3532785,3533333,3534111	3526409,3527339,3527563,3528665,3529825,3530317,3531213,3532015,3532366,3532920,3533510,3536074	
chr14	3538363	3545758	3538645	3545549	-	ATG5	Cre14.g630907.t1.1		3545417,3545073,3543898,3543265,3542824,3542404,3541858,3541357,3538363	3545758,3545135,3543960,3543338,3542890,3542487,3541973,3541393,3540034	Conserved protein involved in autophagy; undergoes conjugation with Atg12 to form a complex involved in Atg8 lipidation; Atg5-Atg12 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site, also forms a complex with Atg16; the Atg5-Atg12/Atg16 complex binds to membranes and is essential for autophagosome formation
chr14	3538363	3545758	3538645	3545549	-	ATG5	Cre14.g630907.t2.1		3545417,3545073,3543265,3542824,3542404,3541858,3541357,3538363	3545758,3545135,3543338,3542890,3542487,3541973,3541393,3540034	Conserved protein involved in autophagy; undergoes conjugation with Atg12 to form a complex involved in Atg8 lipidation; Atg5-Atg12 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site, also forms a complex with Atg16; the Atg5-Atg12/Atg16 complex binds to membranes and is essential for autophagosome formation
chr14	3545879	3548920	3545999	3547591	+	Cre14.g630950.t1.2	Cre14.g630950.t1.2		3545879,3546562,3546925,3547303	3546097,3546678,3547057,3548920	
chr14	3549509	3555623	3552908	3553416	+	Cre14.g630982.t1.2	Cre14.g630982.t1.2		3549509,3552898	3550305,3555623	
chr14	3556123	3559938	3556781	3559675	-	Cre14.g631000.t1.1	Cre14.g631000.t1.1		3559598,3556123	3559938,3559473	
chr14	3560089	3566540	3560310	3564853	+	Cre14.g631050.t1.1	Cre14.g631050.t1.1		3560089,3560646,3563179	3560375,3563019,3566540	
chr14	3566547	3582058	3567122	3581624	-	SRR29	Cre14.g631100.t1.1		3581784,3581496,3581289,3580678,3580184,3579772,3579427,3579022,3578649,3577859,3577515,3577094,3576724,3576475,3576117,3575581,3575283,3574995,3574686,3574398,3574056,3573685,3573305,3572495,3572234,3571927,3571760,3571410,3571211,3570934,3570395,3570219,3569898,3569688,3569399,3569012,3568433,3567844,3567461,3566547	3582058,3581685,3581329,3581148,3580243,3579867,3579520,3579151,3578754,3578484,3577620,3577288,3576870,3576535,3576195,3575827,3575443,3575158,3574816,3574558,3574278,3573947,3573525,3573165,3572364,3572053,3571808,3571656,3571290,3571108,3570803,3570241,3570061,3569728,3569554,3569260,3568554,3568273,3567553,3567253	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912), followed by WCS, papain, LysM and lectin-C domains
chr14	3583659	3587432	3584036	3587193	+	Cre14.g631141.t1.2	Cre14.g631141.t1.2		3583659,3586558,3586738,3586952,3587159	3584075,3586679,3586814,3587003,3587432	
chr14	3588119	3596541	3589073	3594510	+	Cre14.g631145.t1.1	Cre14.g631145.t1.1		3588119,3589062,3589549,3589933,3590442,3591120,3591466,3591968,3592463,3592814,3593085,3593393,3594487	3588870,3589182,3589677,3590295,3590983,3591275,3591610,3592162,3592567,3592874,3593163,3593648,3596541	
chr14	3596809	3598210	3597005	3598048	+	Cre14.g631148.t1.1	Cre14.g631148.t1.1		3596809,3597431,3597748,3598020	3597177,3597573,3597914,3598210	
chr14	3598259	3607521	3598751	3607243	+	CEP14	Cre14.g631150.t1.1		3598259,3598692,3598882,3599144,3599427,3599767,3600180,3600496,3601290,3601590,3601839,3601988,3602355,3602535,3602842,3603470,3603633,3604114,3604285,3605063,3605913,3606581,3606884	3598468,3598774,3599012,3599304,3599649,3600020,3600373,3601148,3601432,3601716,3601887,3602222,3602434,3602709,3603283,3603492,3603781,3604154,3604826,3605644,3606423,3606706,3607521	Cysteine-type endopeptidase, papain type.  Contains WSC and LysM domains
chr14	3598259	3607521	3598918	3607243	+	CEP14	Cre14.g631150.t2.1		3598259,3598882,3599144,3599427,3599767,3600180,3600496,3601290,3601590,3601839,3601988,3602355,3602535,3602842,3603470,3603633,3604114,3604285,3605063,3605913,3606581,3606884	3598468,3599012,3599304,3599649,3600020,3600373,3601148,3601432,3601716,3601887,3602222,3602434,3602709,3603283,3603492,3603781,3604154,3604826,3605644,3606423,3606706,3607521	Cysteine-type endopeptidase, papain type.  Contains WSC and LysM domains
chr14	3608403	3617348	3609420	3617195	-	DII6	Cre14.g631200.t1.2		3617089,3616762,3616231,3615683,3615030,3614610,3614236,3613722,3613235,3612769,3612225,3611861,3611547,3610934,3610530,3610057,3608403	3617348,3616876,3616383,3615761,3615305,3614846,3614319,3613832,3613402,3612830,3612417,3611953,3611665,3611009,3610637,3610173,3609606	inner arm dynein I1/f intermediate chain IC97 [PMID: 1599882; PMID: 1942136]
chr14	3617489	3628658	3617645	3628241	+	Cre14.g631250.t1.1	Cre14.g631250.t1.1		3617489,3618126,3618556,3619050,3619339,3619649,3621435,3622088,3622400,3622804,3623117,3623404,3624067,3624495,3624693,3625124,3625629,3626285,3626491,3627314,3627749	3617765,3618239,3618843,3619178,3619410,3621128,3621770,3622176,3622501,3622920,3623208,3623832,3624306,3624552,3624787,3625403,3626117,3626326,3627163,3627576,3628658	
chr14	3628709	3639391	3628929	3638598	+	Cre14.g631300.t1.2	Cre14.g631300.t1.2		3628709,3629172,3629396,3629704,3630578,3631066,3631972,3632418,3633213,3633714,3634299,3635018,3635635,3636238,3636483,3637272,3637687,3638094,3638485	3629015,3629212,3629500,3630336,3630747,3631507,3632166,3632951,3633391,3634062,3634805,3635205,3636001,3636378,3637054,3637416,3637863,3638237,3639391	
chr14	3640179	3648550	3640370	3647572	+	VSP7	Cre14.g631350.t1.1		3640179,3640795,3641031,3641657,3642166,3642379,3642916,3643481,3643886,3644270,3644604,3645131,3645744,3646386,3647305	3640391,3640861,3641308,3641729,3642233,3642744,3643020,3643659,3643955,3644411,3644731,3645247,3646017,3647119,3648550	hydroxyproline-rich glycoprotein containing (SP)n repeats; resembles VSP4/6; presumed cell wall protein but function unknown.
chr14	3648553	3658168	3649771	3657931	-	Cre14.g631400.t1.1	Cre14.g631400.t1.1		3657825,3657008,3656450,3656051,3655273,3654844,3654555,3652512,3651603,3651301,3650777,3650312,3648553	3658168,3657276,3656602,3656203,3655802,3654997,3654674,3652735,3652266,3651438,3651001,3650527,3650128	
chr14	3658289	3663300	3658636	3662668	+	Cre14.g631451.t1.1	Cre14.g631451.t1.1		3658289,3658815,3660704,3661080,3661335,3661511,3661791,3662119	3658664,3660589,3660981,3661257,3661448,3661704,3661998,3663300	
chr14	3663313	3668048	3664577	3667515	-	Cre14.g631500.t1.1	Cre14.g631500.t1.1		3667377,3667064,3666236,3666066,3665848,3665602,3665283,3665109,3663313	3668048,3667297,3666846,3666102,3666004,3665768,3665442,3665159,3664960	
chr14	3670877	3676008	3671522	3675681	-	Cre14.g631550.t1.1	Cre14.g631550.t1.1		3675669,3675343,3675044,3674506,3674195,3673723,3673293,3672828,3672511,3672041,3670877	3676008,3675426,3675101,3674621,3674266,3673843,3673533,3673074,3672624,3672130,3671843	
chr14	3676063	3680188	3676233	3680044	-	Cre14.g631575.t1.2	Cre14.g631575.t1.2		3680030,3678205,3676063	3680188,3679869,3678100	
chr14	3680549	3683659	3680687	3683283	+	Cre14.g631600.t1.2	Cre14.g631600.t1.2		3680549,3681057,3681423,3681909,3682262,3683163	3680883,3681121,3681495,3681971,3682434,3683659	
chr14	3684104	3688275	3684591	3688110	+	FAP406	Cre14.g631650.t1.1		3684104,3684378,3684582,3684962,3685303,3686755,3687078,3687424,3687903	3684298,3684448,3684740,3685112,3686446,3686864,3687155,3687666,3688275	Found in Cr and Volvox but not strongly conserved elsewhere
chr14	3688334	3690222	3688376	3689573	+	Cre14.g631701.t1.1	Cre14.g631701.t1.1		3688334,3688864	3688687,3690222	
chr14	3690465	3692715	3690676	3692307	+	Cre14.g631750.t1.1	Cre14.g631750.t1.1		3690465,3690865,3691212,3691938	3690700,3690979,3691798,3692715	Basic-leucine zipper (bZIP) transcription factor
chr14	3690465	3692715	3690676	3692307	+	Cre14.g631750.t2.1	Cre14.g631750.t2.1		3690465,3690865,3691215,3691938	3690700,3690979,3691798,3692715	Basic-leucine zipper (bZIP) transcription factor
chr14	3696858	3701373	3697798	3701157	-	Cre14.g631800.t1.2	Cre14.g631800.t1.2		3701091,3700664,3699620,3698986,3696858	3701373,3700795,3700363,3699432,3698827	
chr14	3701544	3704575	3701871	3704137	+	Cre14.g631850.t1.2	Cre14.g631850.t1.2		3701544,3701757,3702250,3702706,3703681	3701634,3701946,3702525,3703395,3704575	
chr14	3704583	3708313	3705265	3708129	-	Cre14.g631900.t1.2	Cre14.g631900.t1.2		3708015,3707651,3707168,3706755,3706325,3705918,3705509,3704583	3708313,3707745,3707278,3706839,3706441,3706068,3705645,3705334	
chr14	3708682	3711973	3709168	3711738	-	Cre14.g631950.t1.2	Cre14.g631950.t1.2		3711597,3711391,3711144,3710970,3710651,3709966,3709725,3708682	3711973,3711433,3711238,3711020,3710800,3710421,3709799,3709552	
chr14	3712038	3720333	3712292	3719824	-	CGE2	Cre14.g632000.t1.1		3719818,3719296,3719039,3718546,3718022,3716621,3716196,3715816,3715290,3714883,3714429,3713171,3712792,3712038	3720333,3719532,3719127,3718818,3718291,3717803,3716419,3715968,3715368,3714951,3714671,3714303,3712977,3712476	Chloroplast GrpE homolog, nucleotide release factor, co-chaperone of HSP70B, chloroplast-targeted; contains an N-terminal octotricoPeptide (octatricoPeptide) Repeat (OPR) domain
chr14	3720464	3736454	3720800	3735757	+	Cre14.g632050.t1.2	Cre14.g632050.t1.2		3720464,3721332,3721651,3722184,3722501,3722845,3723098,3723460,3723891,3724200,3724539,3724921,3725152,3725706,3726164,3726412,3726774,3727235,3727631,3728032,3728442,3728862,3729268,3729520,3730249,3730815,3731082,3731634,3732003,3732537,3733531,3733780,3734573,3735132,3735613	3721000,3721493,3721901,3722302,3722645,3722948,3723195,3723557,3723973,3724293,3724633,3725006,3725350,3725863,3726277,3726489,3726927,3727285,3727790,3728156,3728555,3729062,3729333,3729696,3730470,3730927,3731238,3731817,3732308,3733305,3733658,3734114,3734737,3735365,3736454	
chr14	3736534	3737865	3737085	3737407	+	Cre14.g632076.t1.1	Cre14.g632076.t1.1		3736534	3737865	
chr14	3737954	3741325	3738698	3740426	+	Cre14.g632100.t1.1	Cre14.g632100.t1.1		3737954,3738576,3739543	3738472,3739210,3741325	
chr14	3742124	3750945	3742899	3750260	+	Cre14.g632176.t1.1	Cre14.g632176.t1.1		3742124,3745789,3746347,3747085,3747483,3748146,3748950,3749531	3745514,3745900,3746505,3747160,3747560,3748518,3749100,3750945	
chr14	3750978	3753863	3751403	3753628	-	Cre14.g632250.t1.1	Cre14.g632250.t1.1		3753466,3752510,3750978	3753863,3753195,3752310	
chr14	3754134	3759145	3754511	3758718	+	HDA6	Cre14.g632300.t1.1		3754134,3755096,3756001,3756354,3756815,3757754,3758196	3754802,3755134,3756066,3756458,3756961,3757825,3759145	ChromDB HDA3409
chr14	3759174	3762927	3760230	3762785	-	FAP138	Cre14.g632350.t1.1		3762782,3762462,3762112,3761761,3761402,3760757,3759174	3762927,3762630,3762242,3761883,3761488,3761182,3760476	Flagellar Associated Protein, found in the flagellar proteome
chr14	3763614	3771395	3764011	3770167	+	SSA19	Cre14.g632400.t1.1		3763614,3764007,3764251,3764435,3764728,3764955,3765398,3765664,3765993,3766324,3766692,3766897,3767426,3767800,3768489,3768773,3769223,3769579,3769993	3763882,3764037,3764277,3764527,3764790,3765149,3765430,3765804,3766026,3766478,3766725,3767057,3767569,3768138,3768615,3768825,3769357,3769720,3771395	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr14	3771664	3780805	3771845	3779449	+	Cre14.g632450.t1.1	Cre14.g632450.t1.1		3771664,3772049,3772378,3772696,3773257,3773409,3773641,3773874,3774324,3774740,3775244,3775725,3776312,3776617,3777000,3777454,3777793,3778258,3778618,3779103	3771927,3772076,3772528,3772957,3773272,3773444,3773694,3774158,3774557,3774944,3775353,3775940,3776450,3776726,3777282,3777554,3777951,3778347,3778875,3780805	
chr14	3781094	3789890	3781356	3789462	+	Cre14.g632501.t1.1	Cre14.g632501.t1.1		3781094,3781937,3782552,3782931,3783728,3784271,3785064,3785355,3785544,3785922,3786301,3786751,3787015,3787430,3788203,3788532,3788921,3789396	3781431,3782160,3782576,3783004,3783833,3784383,3785095,3785383,3785625,3785986,3786385,3786799,3787091,3787661,3788326,3788570,3789034,3789890	May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	3789984	3797133	3791033	3796757	-	Cre14.g632550.t1.2	Cre14.g632550.t1.2		3796732,3795544,3793760,3792770,3789984	3797133,3796277,3795181,3793453,3792422	
chr14	3797263	3802914	3797478	3802155	+	Cre14.g632600.t1.1	Cre14.g632600.t1.1		3797263,3797998,3798942,3800829,3801367,3802065	3797624,3798313,3799277,3800957,3801483,3802914	
chr14	3803108	3804303	3803322	3803524	-	Cre14.g632626.t1.1	Cre14.g632626.t1.1		3803108	3804303	
chr14	3804524	3817515	3805204	3815210	+	Cre14.g632650.t1.1	Cre14.g632650.t1.1		3804524,3805335,3805524,3805850,3806267,3806510,3806748,3807172,3807727,3808030,3808447,3808829,3809025,3810146,3811939,3812214,3812642,3812946,3813104,3813245,3813615,3813780,3814063,3814395,3814549,3815135	3805258,3805411,3805725,3806172,3806424,3806568,3806981,3807299,3807797,3808121,3808677,3808895,3810040,3811755,3811985,3812491,3812732,3813013,3813157,3813430,3813651,3813913,3814265,3814440,3814896,3817515	
chr14	3817960	3828943	3818876	3828294	-	Cre14.g632700.t1.1	Cre14.g632700.t1.1		3828461,3828235,3827917,3827481,3827061,3826758,3826268,3825985,3825664,3825459,3825001,3824777,3823635,3822179,3821873,3821592,3821343,3820950,3820805,3820534,3820375,3820128,3819798,3819636,3819146,3817960	3828943,3828311,3828115,3827800,3827218,3826852,3826510,3826109,3825725,3825538,3825270,3824846,3824605,3823446,3821946,3821728,3821433,3821017,3820858,3820704,3820411,3820261,3820036,3819681,3819490,3818930	
chr14	3829230	3840033	3829897	3839885	-	Cre14.g632750.t1.1	Cre14.g632750.t1.1		3839651,3839388,3839113,3838711,3838453,3838303,3837861,3837463,3837002,3836731,3836253,3835931,3834807,3833597,3833186,3832615,3832373,3832125,3831989,3831726,3831500,3831182,3830794,3830646,3830193,3829230	3840033,3839464,3839272,3839003,3838610,3838361,3838094,3837587,3837090,3836807,3836549,3835997,3835792,3834633,3833253,3832817,3832463,3832192,3832042,3831893,3831536,3831315,3831047,3830691,3830537,3830011	
chr14	3840112	3845183	3841015	3845128	-	Cre14.g632759.t1.1	Cre14.g632759.t1.1		3845053,3844399,3843644,3842972,3842523,3842033,3841575,3840112	3845183,3844923,3844141,3843157,3842654,3842176,3841674,3841227	
chr14	3845334	3849065	3845383	3848579	+	Cre14.g632767.t1.1	Cre14.g632767.t1.1		3845334,3845724,3846551,3846986,3847377,3847847,3848498	3845548,3845874,3846668,3847050,3847489,3847993,3849065	
chr14	3849348	3858183	3850005	3858090	-	Cre14.g632775.t1.1	Cre14.g632775.t1.1		3857958,3857608,3856716,3856136,3855025,3854314,3853960,3853507,3852672,3852279,3851703,3851384,3850702,3850317,3849348	3858183,3857793,3856829,3856243,3855078,3854370,3854046,3853590,3852797,3852326,3851847,3851456,3850753,3850449,3850091	
chr14	3858354	3866277	3858712	3864237	+	Cre14.g632783.t1.1	Cre14.g632783.t1.1		3858354,3859654,3860617,3860902,3861185,3861545,3861976,3862500,3862931,3863437,3864006	3858769,3859795,3860681,3860940,3861286,3861622,3862050,3862647,3863064,3863643,3866277	
chr14	3866394	3869425	3866525	3869114	+	Cre14.g632791.t1.1	Cre14.g632791.t1.1		3866394,3866957,3867239,3867538,3868078,3868751	3866627,3867034,3867312,3867808,3868542,3869425	
chr14	3869584	3872510	3869665	3872015	+	ZSP2A	Cre14.g632799.t1.1		3869584,3870064,3871142	3869744,3870860,3872510	
chr14	3874935	3877843	3875404	3877770	-	Cre14.g632807.t1.1	Cre14.g632807.t1.1		3877691,3876560,3874935	3877843,3877356,3876277	
chr14	3877998	3880733	3878361	3880623	-	Cre14.g632815.t1.1	Cre14.g632815.t1.1		3880305,3879291,3878848,3877998	3880733,3880031,3878931,3878517	
chr14	3880964	3882755	3881351	3882592	+	Cre14.g632823.t1.1	Cre14.g632823.t1.1		3880964,3882104,3882536	3881758,3882123,3882755	
chr14	3892832	3895763	3893301	3895667	-	Cre14.g632831.t1.1	Cre14.g632831.t1.1		3895588,3894457,3892832	3895763,3895253,3894174	
chr14	3895828	3898653	3896258	3898520	-	Cre14.g632839.t1.1	Cre14.g632839.t1.1		3898202,3897188,3896745,3895828	3898653,3897928,3896828,3896414	
chr14	3898974	3910465	3899248	3909575	+	ELG44	Cre14.g632847.t1.1		3898974,3900001,3900433,3900833,3901395,3901623,3902286,3902749,3903094,3903360,3903757,3907488,3908174,3908674,3909097	3899655,3900020,3900470,3900928,3901448,3901698,3902341,3902834,3903168,3903458,3903769,3907563,3908298,3908834,3910465	putative terminal arabinosyl transferase on HRGP,  GT47 family; May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	3910544	3918915	3910662	3917547	+	Cre14.g632860.t1.2	Cre14.g632860.t1.2		3910544,3911080,3911618,3912212,3912566,3912829,3913073,3913478,3913894,3914089,3915168,3916199,3916486,3916770,3917445	3910803,3911320,3912006,3912303,3912674,3912857,3913199,3913590,3913948,3915102,3915854,3916258,3916551,3917018,3918915	
chr14	3919192	3923073	3919746	3922996	-	Cre14.g632900.t1.2	Cre14.g632900.t1.2		3921265,3919192	3923073,3920853	
chr14	3924514	3935306	3925457	3934294	+	NOT1	Cre14.g632950.t1.2		3924514,3924766,3925224,3926308,3927147,3927397,3927619,3928018,3928770,3929086,3929385,3929780,3932147,3934113	3924680,3924985,3926114,3926988,3927257,3927480,3927831,3928594,3928935,3929215,3929483,3932005,3933966,3935306	putative homolog of not1p in yeast, a component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes.
chr14	3936014	3938465	3936102	3937846	+	ERV1	Cre14.g633000.t1.2		3936014,3937414,3937756	3936923,3937492,3938465	Sulfhydryl oxidase.  Erv1/Alr, similar to yeast Erv1 (mitochondrial) and Erv2 (ER), Erv1/Alr family; possibly mitochondrial.  Previously incorrectly annotated/switched as ERV2 (should have been ERV1)
chr14	3939688	3944473	3941430	3944215	-	Cre14.g633050.t1.1	Cre14.g633050.t1.1		3944099,3939688	3944473,3943867	
chr14	3944542	3950623	3944951	3949958	-	Cre14.g633100.t1.2	Cre14.g633100.t1.2		3950572,3949578,3949202,3948684,3948150,3947756,3947318,3946280,3945789,3944542	3950623,3950191,3949281,3948994,3948221,3947865,3947399,3947110,3946025,3945446	
chr14	3950724	3958185	3950786	3957211	+	OPR66	Cre14.g633150.t1.1		3950724,3950957,3951141,3951534,3952073,3955183	3950796,3951053,3951204,3951857,3954865,3958185	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; an expressed psudogene: the first intron of the model is non-canonical and is contradicted by EST data and in its absence there is no initiator AUG in phase
chr14	3958234	3961675	3958747	3960903	+	Cre14.g633200.t1.1	Cre14.g633200.t1.1		3958234,3958465,3958625,3958878,3959198,3959570,3960175	3958318,3958526,3958750,3958922,3959281,3960098,3961675	
chr14	3958234	3961675	3958747	3960903	+	Cre14.g633200.t2.1	Cre14.g633200.t2.1		3958234,3958465,3958625,3958878,3959201,3959570,3960175	3958318,3958526,3958750,3958922,3959281,3960098,3961675	
chr14	3961724	3966585	3961895	3965597	+	Cre14.g633250.t1.2	Cre14.g633250.t1.2		3961724,3962411,3962685,3963453,3963714,3964543,3964874,3965203	3962094,3962437,3962735,3963494,3963734,3964584,3964985,3966585	
chr14	3966608	4005513	3966649	4005332	-	Cre14.g633300.t1.1	Cre14.g633300.t1.1		4005241,4004684,4004162,4003345,4002514,4002003,4001505,4000745,4000288,3999687,3999235,3998808,3998409,3997936,3997007,3996642,3995596,3995218,3994719,3994484,3994035,3993641,3993216,3992730,3991902,3991538,3990857,3990568,3990067,3989459,3987645,3987283,3984396,3983935,3982810,3982560,3982080,3981567,3980143,3979694,3979438,3979005,3978493,3976319,3975221,3974834,3972338,3970667,3968586,3968089,3967636,3967414,3966608	4005513,4004827,4004272,4004018,4002634,4002288,4001742,4000870,4000459,3999812,3999422,3998926,3998448,3998225,3997596,3996715,3996236,3995368,3994934,3994518,3994081,3993696,3993395,3992878,3992280,3991631,3991213,3990648,3990249,3989678,3989055,3987435,3986879,3984084,3983619,3982626,3982183,3981647,3981229,3979791,3979482,3979085,3978770,3978113,3975292,3974902,3972437,3971021,3968652,3968191,3967651,3967456,3967015	May contain additional coding sequence in intronic N-island PMID: 27175017
chr14	4005620	4013985	4005879	4013862	-	Cre14.g633350.t1.1	Cre14.g633350.t1.1		4012854,4011994,4011610,4010856,4009812,4008852,4008180,4007224,4006522,4005620	4013985,4012345,4011713,4011290,4010573,4009637,4008512,4007959,4006978,4006285	
chr14	4014086	4019275	4014179	4018824	+	PGA7	Cre14.g633400.t1.1		4014086,4014657	4014404,4019275	
chr14	4019336	4020249	4019385	4020249	+	Cre14.g633425.t1.1	Cre14.g633425.t1.1		4019336	4020249	
chr14	4024220	4027385	4025279	4027121	-	Cre14.g633450.t1.2	Cre14.g633450.t1.2		4027062,4026841,4026684,4026458,4024220	4027385,4026952,4026743,4026535,4026248	
chr14	4027736	4037347	4028121	4036615	+	Cre14.g633500.t1.1	Cre14.g633500.t1.1		4027736,4028409,4028558,4028890,4029372,4029689,4030349,4031225,4031842,4032135,4032641,4033103,4033968,4034355,4034696,4035208,4035646,4036035,4036606	4028313,4028455,4028734,4029058,4029527,4030090,4030941,4031393,4031904,4032266,4032801,4033238,4034105,4034542,4034869,4035412,4035711,4036250,4037347	
chr14	4037350	4038994	4037975	4038881	-	Cre14.g633550.t1.2	Cre14.g633550.t1.2		4038761,4038306,4037350	4038994,4038479,4038074	SCP-2 sterol transfer family
chr14	4039050	4041515	4039764	4041375	-	Cre14.g633600.t1.1	Cre14.g633600.t1.1		4041322,4041187,4040956,4040725,4040552,4040285,4040145,4040012,4039050	4041515,4041253,4041091,4040820,4040610,4040394,4040207,4040078,4039860	
chr14	4039050	4041515	4039764	4041375	-	Cre14.g633600.t2.1	Cre14.g633600.t2.1		4041322,4041187,4040956,4040725,4040552,4040285,4040012,4039050	4041515,4041253,4041091,4040820,4040610,4040394,4040078,4039860	
chr14	4041579	4042625	4041950	4042569	-	Cre14.g633626.t1.1	Cre14.g633626.t1.1		4042422,4042177,4041579	4042625,4042262,4041975	
chr14	4047340	4057755	4047766	4057428	-	PRP6	Cre14.g633650.t1.1		4057245,4056588,4056218,4055084,4054757,4054362,4053954,4053441,4053080,4052872,4052640,4052180,4051920,4051631,4051122,4050705,4050371,4049946,4049698,4049014,4048609,4048200,4047340	4057755,4056687,4056294,4055206,4054830,4054516,4054036,4053577,4053188,4052879,4052766,4052347,4052009,4051714,4051421,4050808,4050433,4050066,4049804,4049230,4048761,4048313,4047916	Splicing factor, component of the U4/U6-U5 snRNP complex. Contains TPR repeats. Homologue of S. cerevisiae Prp6 protein
chr14	4057856	4064657	4058012	4062837	+	Cre14.g633700.t1.2	Cre14.g633700.t1.2		4057856,4058475,4058805,4059174,4059673,4060120,4060618,4061496,4061945,4062701	4058067,4058582,4058858,4059499,4059952,4060362,4061276,4061584,4062526,4064657	
chr14	4064716	4078080	4064982	4077107	+	IPB2	Cre14.g633750.t1.1		4064716,4065311,4065771,4065959,4066435,4066896,4067232,4067596,4068027,4068453,4069033,4069481,4070050,4070452,4070862,4072386,4072695,4073087,4073479,4074192,4074897,4075164,4075517,4076045,4076529,4077018	4065207,4065382,4065836,4066066,4066506,4066985,4067360,4067769,4068086,4068683,4069242,4069651,4070214,4070526,4070966,4072487,4072841,4073233,4073613,4074338,4074962,4075262,4075686,4076219,4076688,4078080	
chr14	4078906	4084465	4079029	4082292	+	Cre14.g633789.t1.2	Cre14.g633789.t1.2		4078906,4079278,4079605,4080457	4079139,4079333,4080201,4084465	
chr14	4084932	4087695	4085031	4087361	-	Cre14.g633850.t1.1	Cre14.g633850.t1.1		4087507,4087208,4086148,4085565,4084932	4087695,4087375,4086903,4085894,4085373	
chr14	4087796	4093152	4087911	4092952	+	Cre14.g633900.t1.1	Cre14.g633900.t1.1		4087796,4088032,4088676,4089022,4089532,4089739,4090020,4090211,4090472,4090965,4091280,4091554,4091962,4092428,4092864	4087935,4088322,4088738,4089293,4089570,4089904,4090072,4090327,4090671,4091023,4091354,4091622,4091989,4092665,4093152	
chr14	4093206	4097227	4093234	4096749	+	Cre14.g633901.t1.1	Cre14.g633901.t1.1		4093206,4093476,4094681,4095139,4095419,4095757,4096329	4093376,4094516,4094958,4095221,4095551,4096149,4097227	
chr14	4102336	4105017	4102388	4104600	+	Cre14.g633903.t1.2	Cre14.g633903.t1.2		4102336,4102525,4102963,4103225,4103749,4104183,4104501	4102445,4102650,4102983,4103329,4104008,4104354,4105017	
chr14	4097276	4102282	4097454	4101981	+	Cre14.g633904.t1.1	Cre14.g633904.t1.1		4097276,4098557,4099039,4101032,4101510	4098330,4098942,4100845,4101304,4102282	
chr14	4105020	4106935	4105211	4106617	-	Cre14.g633950.t1.2	Cre14.g633950.t1.2		4106527,4106207,4105020	4106935,4106287,4106057	
chr14	4107066	4111152	4107198	4110123	+	Cre14.g634000.t1.1	Cre14.g634000.t1.1		4107066,4107384,4108017,4108301,4109076,4109474,4110043	4107246,4107721,4108086,4108771,4109195,4109615,4111152	
chr14	4112456	4115887	4112646	4115365	+	Cre14.g634100.t1.1	Cre14.g634100.t1.1		4112456,4113263,4113537,4115297	4112845,4113289,4113587,4115887	
chr14	4115936	4117720	4116516	4116964	+	Cre14.g634113.t1.2	Cre14.g634113.t1.2		4115936,4116424	4116322,4117720	
chr14	4118216	4123910	4119643	4122915	+	Cre14.g634150.t1.1	Cre14.g634150.t1.1		4118216,4118576,4119534,4120192,4121416,4122023	4118442,4118617,4119816,4121221,4121846,4123910	
chr14	4125516	4139254	4125798	4138107	+	Cre14.g634193.t1.1	Cre14.g634193.t1.1		4125516,4125907,4126269,4130287,4132125,4133035,4133409,4133638,4134754,4135859,4136462,4137666	4125807,4125963,4130178,4131944,4132916,4133287,4133461,4134540,4135659,4136296,4137409,4139254	
chr14	4139470	4143965	4140266	4143636	-	Cre14.g634236.t1.1	Cre14.g634236.t1.1		4143605,4142153,4141995,4141799,4141557,4141313,4141099,4140871,4140457,4139470	4143965,4142888,4142000,4141916,4141636,4141390,4141130,4140879,4140589,4140266	
chr14	4139470	4143965	4140266	4143636	-	Cre14.g634236.t2.1	Cre14.g634236.t2.1		4143605,4142153,4141995,4141799,4141557,4141313,4141099,4140871,4140457,4139470	4143965,4142888,4142000,4141916,4141636,4141390,4141130,4140879,4140584,4140266	
chr14	4139470	4142935	4140266	4141722	-	Cre14.g634236.t3.1	Cre14.g634236.t3.1		4142153,4141710,4141557,4141313,4141099,4140871,4140457,4139470	4142935,4142000,4141636,4141390,4141130,4140879,4140589,4140266	
chr14	4144686	4147259	4145046	4145233	+	Cre14.g634279.t1.1	Cre14.g634279.t1.1		4144686	4147259	
chr14	4147306	4150687	4147661	4147851	+	Cre14.g634322.t1.1	Cre14.g634322.t1.1		4147306	4150687	
chr14	4154776	4157697	4155163	4155353	+	Cre14.g634365.t1.1	Cre14.g634365.t1.1		4154776	4157697	
chr15	1944	9327	1944	7688	+	Cre15.g634500.t1.1	Cre15.g634500.t1.1		1944,3890,5297,5611,6221	2387,5176,5434,6039,9327	
chr15	9330	14465	9452	14146	-	Cre15.g634550.t1.1	Cre15.g634550.t1.1		14064,12582,12057,10953,9812,9330	14465,13921,12398,11853,10516,9452	
chr15	14566	18775	16737	18751	+	Cre15.g634566.t1.1	Cre15.g634566.t1.1		14566,15250,16645,18052,18360,18744	15054,15345,17931,18189,18682,18775	
chr15	23979	27630	24394	27173	-	Cre15.g634582.t1.1	Cre15.g634582.t1.1		27091,25609,25084,23979	27630,26948,25425,24880	
chr15	37376	50823	37677	50239	+	Cre15.g634600.t1.1	Cre15.g634600.t1.1		37376,38002,38343,38553,39112,39351,39584,41495,42121,43626,44790,45176,45562,45989,46607,46853,47093,47681,48090,48477,48927,49240	37719,38123,38427,38921,39195,39461,41253,41972,43454,44580,44974,45329,45762,46357,46705,46981,47485,47779,48188,48575,49010,50823	
chr15	58476	67591	58603	65666	+	Cre15.g634650.t1.2	Cre15.g634650.t1.2		58476,58847,59087,59558,59941,60910	58658,58980,59190,59729,60725,67591	
chr15	67757	84735	67974	84448	-	RECQ4	Cre15.g634701.t1.1		84342,83728,81842,81368,80947,80330,78581,76879,76273,75087,74758,74175,73646,73378,72374,71991,70874,70459,69898,69285,68676,67757	84735,84213,83532,81540,81148,80698,80227,76997,76651,76023,74805,74290,73762,73442,72698,72134,71359,70589,70061,69604,68779,68269	Most similar to RecQ4 class, implicated in replication initiation in animals. ts-lethal mutations block DNA replication (PMID 25336509)
chr15	86476	92085	88904	91778	-	Cre15.g634750.t1.1	Cre15.g634750.t1.1		91643,91059,90740,90145,89781,86476	92085,91118,90793,90570,89884,89481	
chr15	92140	97565	93013	97334	-	NCL3	Cre15.g634800.t1.1		96464,95349,92140	97565,96084,95226	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr15	98159	101265	100806	101023	-	Cre15.g634827.t1.1	Cre15.g634827.t1.1		98159	101265	
chr15	101320	104410	101438	104290	-	Cre15.g634855.t1.2	Cre15.g634855.t1.2		104242,104013,103808,102758,102335,101896,101320	104410,104145,103911,103338,102425,102012,101738	
chr15	107247	108855	107816	108799	-	Cre15.g634878.t1.1	Cre15.g634878.t1.1		108676,108304,107247	108855,108384,108080	
chr15	108996	112127	109853	110193	+	Cre15.g634900.t1.2	Cre15.g634900.t1.2		108996,109853	109242,112127	
chr15	112486	114507	113309	114266	+	Cre15.g634913.t1.1	Cre15.g634913.t1.1		112486,113309,114019,114253	112712,113644,114090,114507	
chr15	114823	118285	115784	117465	-	Cre15.g634925.t1.1	Cre15.g634925.t1.1		118083,116960,116366,114823	118285,117663,116464,115834	
chr15	114823	118125	115784	117465	-	Cre15.g634925.t2.1	Cre15.g634925.t2.1		116960,116366,114823	118125,116464,115834	
chr15	120820	136175	122621	135886	-	Cre15.g634950.t1.1	Cre15.g634950.t1.1		134683,132772,127506,126520,120820	136175,134067,132212,127252,122902	
chr15	137410	156415	139109	156124	-	Cre15.g635000.t1.1	Cre15.g635000.t1.1		155250,153669,153309,153062,150734,150169,146814,146039,145478,144723,144346,143894,143387,143214,142566,137410	156415,154972,153373,153098,150785,150224,149702,146628,145580,144854,144444,144013,143465,143227,142955,142340	May contain additional coding sequence in intronic N-island PMID: 27175017
chr15	156516	158897	156696	157553	+	Cre15.g635034.t1.1	Cre15.g635034.t1.1		156516,157011,157533	156720,157149,158897	
chr15	159696	173295	159871	172173	+	Cre15.g635067.t1.1	Cre15.g635067.t1.1		159696,160473,160870,162452,163049,163384,163960,164580,164878,165413,165968,166483,166874,168094,168814,169391,169682,170311,170956,171485,172011	160015,160525,160952,162552,163129,163490,164101,164652,165017,165444,166029,166574,167092,168300,168923,169415,169890,170566,171102,171613,173295	May contain additional coding sequence in intronic N-island PMID: 27175017
chr15	174383	180224	174844	179056	+	Cre15.g635100.t1.2	Cre15.g635100.t1.2		174383,174771,175467,176089,177505,178609,178882	174509,174879,175800,177094,178159,178672,180224	
chr15	183217	194582	183786	194453	-	Cre15.g635150.t1.1	Cre15.g635150.t1.1		192918,191315,188661,185499,184476,183217	194582,192440,191044,188513,185280,184140	
chr15	194683	198554	195526	197887	+	Cre15.g635200.t1.2	Cre15.g635200.t1.2		194683,195229,196599,197312,197743	194951,195666,196726,197373,198554	May play a role in controlling mitochondrial size and number
chr15	198703	201894	199054	200995	+	Cre15.g635250.t1.1	Cre15.g635250.t1.1		198703,200836	200476,201894	
chr15	201908	206262	203129	205831	-	Cre15.g635300.t1.1	Cre15.g635300.t1.1		203761,201908	206262,203264	
chr15	208153	220423	208261	219373	+	PRM4	Cre15.g635350.t1.2		208153,208433,208987,210217,210832,211107,211846,212337,212565,213089,214155,214579,218669,219186	208337,208551,209682,210336,210930,211116,211986,212464,212624,213407,214236,214747,218928,220423	Protein-/Histone-arginine N-methyltransferase.  Ribosomal L11 methyltransferase-like; May contain additional coding sequence in intronic N-island PMID: 27175017
chr15	208153	215404	208261	214905	+	PRM4	Cre15.g635350.t2.1		208153,208433,208987,210217,210832,211107,211846,212337,212565,213089,214155,214579,214893	208337,208551,209682,210336,210930,211116,211986,212464,212624,213407,214236,214747,215404	Protein-/Histone-arginine N-methyltransferase.  Ribosomal L11 methyltransferase-like; May contain additional coding sequence in intronic N-island PMID: 27175017
chr15	208153	215404	208261	214905	+	PRM4	Cre15.g635350.t3.1		208153,208433,208987,210217,210832,211107,211846,212337,213089,214155,214579,214893	208337,208551,209682,210336,210930,211116,211986,212464,213407,214236,214747,215404	Protein-/Histone-arginine N-methyltransferase.  Ribosomal L11 methyltransferase-like; May contain additional coding sequence in intronic N-island PMID: 27175017
chr15	215542	217432	215568	217403	-	Cre15.g635376.t1.1	Cre15.g635376.t1.1		217361,217046,216916,216236,215863,215542	217432,217099,216942,216301,215995,215591	
chr15	222917	226544	223019	225996	+	ZYS3	Cre15.g635400.t1.2		222917,223575,224056,224730,225243,225760	223136,223826,224194,224829,225514,226544	Zygote-specific protein 3; partial sequence contains ankyrin repeats.
chr15	226647	229922	227894	229837	-	Cre15.g635450.t1.2	Cre15.g635450.t1.2		229746,228932,228470,226647	229922,229285,228630,228164	
chr15	280797	283952	281294	283894	-	FAP357	Cre15.g635600.t1.2		283852,283721,283103,282720,282302,281734,280797	283952,283784,283230,282791,282412,281835,281381	Similar to Nascent Polypeptide Associated Complex alpha subunit
chr15	284073	303140	284213	302788	+	Cre15.g635650.t1.2	Cre15.g635650.t1.2		284073,284787,285372,286267,286842,287458,287896,288397,289829,290392,291230,291530,292018,292672,293044,293407,294344,294915,295283,295881,296144,296375,296721,297728,298603,299102,299779,300498,300981,301291	284359,285147,285460,286485,287040,287562,288101,289680,290117,290728,291306,291733,292122,292737,293123,293875,294481,295013,295552,296033,296161,296534,297202,298321,298831,299253,299971,300586,301055,303140	
chr15	284073	303140	284213	302788	+	Cre15.g635650.t2.1	Cre15.g635650.t2.1		284073,284787,285372,286267,286842,287458,287896,288397,289829,290392,291230,291530,292018,292672,293044,293407,294344,294915,295283,295881,296375,296721,297728,298603,299102,299779,300498,300981,301291	284359,285147,285460,286485,287040,287562,288101,289680,290117,290728,291306,291733,292122,292737,293123,293875,294481,295013,295552,296033,296534,297202,298321,298831,299253,299971,300586,301055,303140	
chr15	306363	315693	307054	313907	+	MAPKKK12	Cre15.g635700.t1.1		306363,307402,307671,307886,308739,309147,309612,310664,311814,312513,312878	307219,307516,307752,308132,308814,309386,310529,311490,312278,312725,315693	
chr15	315903	318023	316171	317106	+	Cre15.g635717.t1.1	Cre15.g635717.t1.1		315903,316690,317106	316484,316741,318023	
chr15	315903	318023	316171	317106	+	Cre15.g635717.t2.1	Cre15.g635717.t2.1		315903,316690,317106	316484,316748,318023	
chr15	318207	328642	318642	328419	-	Cre15.g635750.t1.1	Cre15.g635750.t1.1		328055,327697,327307,327062,326359,324958,324389,323303,322839,322493,322156,321441,320980,320435,320229,319897,319507,319043,318207	328642,327845,327336,327135,326410,325081,324488,323821,322905,322567,322265,321539,321070,320509,320276,319971,319636,319143,318831	
chr15	318207	328642	318642	328419	-	Cre15.g635750.t2.1	Cre15.g635750.t2.1		328055,327697,327307,327062,326359,324958,324389,323303,322839,322493,322156,321441,320980,320435,320229,319897,319507,319043,318207	328642,327845,327336,327135,326410,325081,324488,323719,322905,322567,322265,321539,321070,320509,320276,319971,319636,319143,318831	
chr15	328743	341616	329047	341325	+	SMC1	Cre15.g635800.t1.1		328743,329609,330038,330423,330731,331083,331419,331687,332109,332526,333014,334184,334295,334905,335416,335744,336165,336741,337606,338037,338269,339081,339522,339960,340568,341070	329338,329833,330169,330527,330841,331148,331475,331840,332221,332591,333147,334221,334494,335030,335565,335953,336326,337327,337765,338107,338284,339137,339624,340042,340783,341616	Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1); ChromDB CPC3404; May contain additional coding sequence in intronic N-island PMID: 27175017; ts-lethal mutant was isolated (PMID 29743196)
chr15	342765	348662	343534	348630	-	ATP3	Cre15.g635850.t1.2		348526,348412,348175,347967,347754,347490,346980,344389,344272,343889,342765	348662,348455,348233,348060,347873,347611,347099,344518,344315,344010,343607	H+-transporting two-sector ATPase, gamma subunit, mitochondria targeted (by homology to ATP3_ARATH, human ATP5C1); part of the F1 sector of the enzyme
chr15	342765	348662	343534	348630	-	ATP3	Cre15.g635850.t2.1		348526,348412,348175,347967,347754,347490,346980,344402,343889,342765	348662,348455,348233,348060,347873,347611,347099,344518,344010,343607	H+-transporting two-sector ATPase, gamma subunit, mitochondria targeted (by homology to ATP3_ARATH, human ATP5C1); part of the F1 sector of the enzyme
chr15	348747	352762	349805	352643	-	Cre15.g635900.t1.1	Cre15.g635900.t1.1		350912,350424,348747	352762,350684,350111	
chr15	355047	369642	356212	369464	-	Cre15.g635950.t1.1	Cre15.g635950.t1.1		369442,369279,369006,367194,366351,365867,365301,364432,363937,363545,360411,360059,359444,358445,357998,357810,357247,356865,355047	369642,369322,369122,367358,366603,366024,365366,364554,364001,363599,360561,360174,359626,358531,358099,357845,357349,357028,356491	
chr15	355047	369642	356212	369464	-	Cre15.g635950.t2.1	Cre15.g635950.t2.1		369442,369279,369006,367194,366351,365867,365301,364432,363937,363545,360411,360059,359444,358445,357998,357810,357247,356865,355047	369642,369322,369122,367358,366600,366024,365366,364554,364001,363599,360561,360174,359626,358531,358099,357845,357349,357028,356491	
chr15	370593	373544	370708	373233	+	Cre15.g635993.t1.2	Cre15.g635993.t1.2		370593,371649	371542,373544	
chr15	373643	377954	373746	377372	+	Cre15.g635998.t1.1	Cre15.g635998.t1.1		373643,376140,376628	375657,376259,377954	
chr15	380443	385835	380538	385126	+	Cre15.g636004.t1.2	Cre15.g636004.t1.2		380443,383584,384475	383181,383703,385835	
chr15	386014	389447	386595	389418	-	CPLD31	Cre15.g636050.t1.2		389210,388967,388593,388157,387702,387371,386991,386014	389447,389076,388683,388278,387728,387427,387053,386658	Conserved expressed protein; possible thylakoid lumen localization
chr15	389593	396404	390394	395934	+	Cre15.g636075.t1.1	Cre15.g636075.t1.1		389593,390332,391026,395560	390023,390701,391445,396404	
chr15	396453	400485	396594	399706	+	Cre15.g636100.t1.1	Cre15.g636100.t1.1		396453,396762,397100,398275,398572,398933,399293,399608	396675,396798,397174,398340,398625,398998,399385,400485	
chr15	396453	400485	396594	399706	+	Cre15.g636100.t2.1	Cre15.g636100.t2.1		396453,396762,397100,398275,398572,398945,399293,399608	396675,396798,397174,398340,398625,398998,399385,400485	
chr15	396453	400485	396594	399706	+	Cre15.g636100.t3.1	Cre15.g636100.t3.1		396453,396762,397100,398572,398933,399293,399608	396675,396798,397174,398625,398998,399385,400485	
chr15	400527	418442	401393	418295	-	Cre15.g636176.t1.1	Cre15.g636176.t1.1		418202,417729,416882,416456,415356,414648,413971,413379,410793,409941,409451,403421,402420,400527	418442,417827,416949,416516,416045,414996,414247,413667,413123,410252,409550,403520,402501,401684	
chr15	418507	428220	419334	428073	-	Cre15.g636250.t1.2	Cre15.g636250.t1.2		428034,427577,427237,427024,426553,425641,425051,424285,424058,423503,423153,422713,422228,421798,421409,419455,418507	428220,427703,427307,427104,426603,425681,425145,424390,424124,423554,423221,422825,422302,421879,421493,421181,419334	
chr15	428343	433064	428614	431619	+	CPN2	Cre15.g636300.t1.2		428343,429367,430129,430464,431289	428776,429544,430241,430550,433064	
chr15	433113	435824	433140	435455	+	Cre15.g636350.t1.1	Cre15.g636350.t1.1		433113,433364,435023	433279,434877,435824	
chr15	436457	444072	437603	443578	-	Cre15.g636400.t1.1	Cre15.g636400.t1.1		443840,443736,443542,442953,441438,440734,440374,440238,439371,439000,438053,436457	444072,443759,443607,443052,441497,440866,440513,440285,439477,439059,438158,437632	
chr15	436457	444072	437603	443578	-	Cre15.g636400.t2.1	Cre15.g636400.t2.1		443840,443736,443542,442953,441438,440734,440374,439371,439000,438053,436457	444072,443759,443607,443052,441497,440866,440513,439477,439059,438158,437632	
chr15	444173	451333	444275	450035	+	Cre15.g636450.t1.2	Cre15.g636450.t1.2		444173,444773,446706,447160,447817,448688,449047,449498,449933	444458,446284,446762,447251,448389,448777,449106,449609,451333	with homology to Bicoid-interacting 3 (Bin3) protein
chr15	451375	454472	452961	454431	-	Cre15.g636500.t1.2	Cre15.g636500.t1.2		454127,453934,451375	454472,453965,453030	
chr15	459587	466342	461541	465723	-	Cre15.g636550.t1.2	Cre15.g636550.t1.2		465612,464710,462530,459587	466342,465017,464271,462350	
chr15	459587	466202	461541	465723	-	Cre15.g636550.t2.1	Cre15.g636550.t2.1		465612,464710,462530,459587	466202,465017,464271,462350	
chr15	466659	481612	467076	481209	-	FAP391	Cre15.g636600.t1.2		481120,480010,478615,477699,477263,476786,475523,474900,474600,473684,473248,472771,471534,470911,470271,469886,468003,466659	481612,480805,479722,478217,477439,476850,476419,475343,474681,474202,473424,472835,472430,471354,470537,469969,468884,467523	Found in Cr and Volvox
chr15	481753	489514	481872	489122	+	Cre15.g636650.t1.2	Cre15.g636650.t1.2		481753,482655,483321,486121,487003,488037,488780,489008	482273,482730,485603,486812,487359,488210,488837,489514	
chr15	489687	494452	490722	494307	-	Cre15.g636700.t1.1	Cre15.g636700.t1.1		492693,489687	494452,490818	
chr15	495422	499024	495521	498337	+	Cre15.g636750.t1.2	Cre15.g636750.t1.2		495422,495788,496535,497004,497329,497939,498249	495662,495838,496600,497072,497472,497982,499024	
chr15	499073	503304	499110	502173	+	Cre15.g636800.t1.1	Cre15.g636800.t1.1		499073,499366,499937,500647,501258,501685,502067	499251,499416,500002,500715,501407,501728,503304	
chr15	503307	505262	504806	505059	-	Cre15.g636840.t1.2	Cre15.g636840.t1.2		503307	505262	
chr15	505525	514872	506176	514350	-	Cre15.g636896.t1.1	Cre15.g636896.t1.1		514294,513172,512756,511703,511409,510580,509758,509210,508792,505525	514872,513277,512904,512105,511471,510666,510326,509342,508852,506817	
chr15	515023	520424	515188	519928	+	Cre15.g636950.t1.2	Cre15.g636950.t1.2		515023,515953,516621,519692	515647,516255,516705,520424	
chr15	520873	528454	521790	526064	+	Cre15.g637000.t1.1	Cre15.g637000.t1.1		520873,521782,522879,524952	521359,522086,524710,528454	
chr15	529286	532059	529482	530899	+	FAP274	Cre15.g637050.t1.2		529286,529462,529624,529889,530372,530854	529336,529512,529641,530098,530437,532059	Flagellar Associated Protein, found in the flagellar proteome; there are two isoforms, FAP274a and FAP274b, minor variant arising from alternative transcription start; function unknown; possible target of a miRNA directing cleavage at end of first exon (PMID: 17538623)
chr15	533275	541892	535298	541757	-	Cre15.g637100.t1.2	Cre15.g637100.t1.2		541561,541361,540858,539326,538915,538570,537921,537481,536965,536600,536239,535588,533275	541892,541415,540942,539439,538998,538632,538025,537600,537294,536680,536370,536049,535352	
chr15	548606	555287	548845	553093	+	Cre15.g637150.t1.1	Cre15.g637150.t1.1		548606,549017,549230,549430,549792	548926,549072,549277,549459,555287	
chr15	556026	557565	556687	557234	-	Cre15.g637183.t1.1	Cre15.g637183.t1.1		556026	557565	
chr15	558136	561237	558486	561125	+	Cre15.g637216.t1.1	Cre15.g637216.t1.1		558136,559207,560224,560969	558501,560023,560390,561237	
chr15	561240	572025	561263	571867	-	Cre15.g637249.t1.1	Cre15.g637249.t1.1		571826,569969,569515,568394,566103,564963,564592,563981,563493,562950,562564,562045,561240	572025,571662,569819,569120,568185,565897,564715,564407,563553,563029,562656,562263,561284	
chr15	572126	578846	572374	577663	+	Cre15.g637282.t1.1	Cre15.g637282.t1.1		572126,574098,574731,575101,575718,576419,577103,577622	572419,574234,574896,575446,575854,576550,577232,578846	
chr15	579306	583757	580493	581820	+	Cre15.g637315.t1.1	Cre15.g637315.t1.1		579306,579720,580726	579614,580581,583757	
chr15	584890	588905	585703	588879	-	Cre15.g637350.t1.2	Cre15.g637350.t1.2		588795,588557,587744,587277,586883,586583,586210,584890	588905,588645,588331,587355,586918,586681,586296,585820	tRNA methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the 2'-OH of the guanosine residue at position 18 of tRNAs
chr15	605996	608881	606120	607510	+	Cre15.g637401.t1.1	Cre15.g637401.t1.1		605996,606868	606216,608881	
chr15	615681	617585	617172	617468	-	Cre15.g637450.t1.2	Cre15.g637450.t1.2		617387,615681	617585,617256	
chr15	617711	620875	620548	620735	-	Cre15.g637501.t1.1	Cre15.g637501.t1.1		617711	620875	
chr15	627606	637414	627937	636573	+	Cre15.g637552.t1.1	Cre15.g637552.t1.1		627606,628286,628687,632226,634708,635071,635348,635614,635929,636466	628105,628529,628727,634451,634821,635122,635459,635695,636208,637414	
chr15	627606	637089	627937	636573	+	Cre15.g637552.t2.1	Cre15.g637552.t2.1		627606,628286,628687,632226,634708,635071,635348,635614,635929,636466	628105,628529,628727,634451,634821,635122,635459,635695,636208,637089	
chr15	644977	651255	645477	650842	-	Cre15.g637602.t1.1	Cre15.g637602.t1.1		650674,650238,650093,647611,647230,646922,646582,646349,645842,644977	651255,650481,650133,649251,647343,646973,646693,646430,646121,645584	
chr15	653690	660105	654608	659902	-	Cre15.g637700.t1.2	Cre15.g637700.t1.2		659869,659186,658481,658174,657519,656726,654894,653690	660105,659494,658564,658235,657636,656857,656385,654608	
chr15	660140	663725	660754	663551	-	Cre15.g637750.t1.1	Cre15.g637750.t1.1		661472,660140	663725,660889	
chr15	660524	663725	660754	663551	-	Cre15.g637750.t2.1	Cre15.g637750.t2.1		661472,660524	663725,660889	
chr15	660524	663725	661423	663551	-	Cre15.g637750.t3.1	Cre15.g637750.t3.1		660524	663725	
chr15	663780	677045	665057	676766	-	Cre15.g637761.t1.2	Cre15.g637761.t1.2		676697,676317,675784,675182,674542,674172,673595,673198,672802,672601,672278,671930,671598,671347,671161,669963,669498,669178,668785,668416,667952,667547,667006,666565,666066,663780	677045,676355,675938,675230,674616,674332,673715,673246,672922,672662,672390,672001,671651,671426,671245,670068,669639,669253,668894,668496,668048,667612,667112,666636,666138,665183	
chr15	663780	677045	665057	676766	-	Cre15.g637761.t2.1	Cre15.g637761.t2.1		676697,676317,675784,675182,674542,674172,674042,673595,673198,672802,672601,672278,671598,671347,671161,669963,669498,669178,668785,668416,667952,667547,667006,666565,666066,663780	677045,676355,675938,675230,674616,674332,674065,673715,673246,672922,672662,672390,671651,671426,671245,670068,669639,669253,668894,668496,668048,667612,667112,666636,666138,665183	
chr15	663780	677045	665057	676766	-	Cre15.g637761.t3.1	Cre15.g637761.t3.1		676697,676317,675784,675182,674542,674172,673595,673198,672802,672601,672278,671598,671347,671161,669963,669498,669178,668785,668416,667952,667547,667006,666565,666066,663780	677045,676355,675938,675230,674616,674332,673715,673246,672922,672662,672390,671651,671426,671245,670068,669639,669253,668894,668496,668048,667612,667112,666636,666138,665183	
chr15	878963	882816	879164	881910	+	NCL13	Cre15.g637850.t1.1		878963,879966	879674,882816	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	883840	888088	884907	887254	+	Cre15.g637900.t1.1	Cre15.g637900.t1.1		883840,884901,885259,885865,886160,886695,886925,887131	884556,884964,885732,885984,886579,886799,887062,888088	Has homologs only in Chlamydomonas
chr15	1108216	1113927	1108407	1111912	+	OPR69	Cre15.g638000.t1.1		1108216,1109470	1109184,1113927	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1102836	1107831	1103425	1106594	+	OPR70	Cre15.g638050.t1.1		1102836,1104476	1104196,1107831	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; 3'-end seems truncated in CC-125, not in other strains
chr15	1098486	1102786	1098720	1102220	+	NCL32	Cre15.g638100.t1.1		1098486,1098891,1099572,1102220	1098772,1099270,1101912,1102786	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	230018	236284	230130	236029	+	Cre15.g638101.t1.1	Cre15.g638101.t1.1		230018,230379,230973,231448,231764,232501,232877,235584,235882	230182,230554,231038,231534,231883,232560,232972,235622,236284	
chr15	1093526	1097989	1093679	1097036	+	NCL31	Cre15.g638150.t1.1		1093526,1094744	1094441,1097989	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1076486	1081385	1077092	1080824	+	NCL28	Cre15.g638300.t1.1		1076486,1078173,1080824	1077893,1080516,1081385	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1081876	1086727	1082136	1085756	+	NCL29	Cre15.g638303.t1.1		1081876,1082307,1083089,1085756	1082194,1082818,1085444,1086727	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1086776	1092814	1086884	1092038	+	NCL30	Cre15.g638304.t1.1		1086776,1087978,1090633,1092038	1087622,1090327,1091278,1092814	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1068016	1071519	1068118	1070977	+	Cre15.g638400.t1.2	Cre15.g638400.t1.2		1068016,1068277,1068538,1068857,1069204,1069641,1069962,1070935	1068191,1068317,1068624,1068929,1069259,1069707,1070044,1071519	
chr15	1071566	1076437	1072159	1075843	+	OPR76	Cre15.g638401.t1.1		1071566,1073186,1075843	1072900,1075535,1076437	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1063996	1067484	1064267	1066850	+	NCL26	Cre15.g638450.t1.2		1063996,1064942	1064684,1067484	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1058253	1063713	1058328	1062883	+	CYC1	Cre15.g638500.t1.2		1058253,1058587,1059604,1060853,1061352,1061992,1062751	1058409,1058817,1059717,1060942,1061480,1062159,1063713	cytochrome c1 of ubiquinol:cytochrome c oxidoreductase cytochrome c1 (mitochondrial complex III); mitochondrial pre-apocytochrome c1;[GI:12005507]; gb:AAG44483; PMID: 12589438; = CYT1 from yeast
chr15	1044303	1048895	1045078	1048709	-	NCL25	Cre15.g638550.t1.1		1048679,1047950,1044303	1048895,1048588,1047673	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	1050640	1058115	1051605	1057705	-	OPR78	Cre15.g638551.t1.1		1057513,1057107,1055485,1054307,1053570,1052533,1050640	1058115,1057154,1055585,1054478,1053644,1052637,1051650	
chr15	1034333	1039095	1035417	1038990	-	NCL23	Cre15.g638650.t1.1		1038300,1034333	1039095,1038024	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; a pseudogene in CC-125, not CC-124
chr15	1039144	1044255	1040370	1043951	-	NCL24	Cre15.g638651.t1.1		1043918,1043153,1039144	1044255,1043821,1042875	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; 3'-end seems frameshifted in CC-125, not in other strains
chr15	1029830	1034285	1030762	1034171	-	OPR82	Cre15.g638700.t1.1		1033832,1033507,1029830	1034285,1033599,1033222	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; 3' seems truncated in CC-125 compared to CC-124
chr15	1024446	1029775	1025385	1029177	-	NCL21	Cre15.g638750.t1.2		1028424,1028002,1024446	1029775,1028148,1027893	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; a pseudogene in CC-125, not CC-124 or S1D2
chr15	997456	1003259	998327	1003088	-	OPR87	Cre15.g638950.t1.1		1002308,999191,998541,997456	1003259,1002019,999069,998327	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; dominant mutation in this gene destabilizes atpA mRNA
chr15	1003810	1010065	1004496	1009784	-	NCL19	Cre15.g638954.t1.1		1009445,1009120,1008143,1007376,1003810	1010065,1009209,1008843,1007940,1007088	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; contains an internal sequence gap
chr15	1003810	1009875	1004496	1009784	-	NCL19	Cre15.g638954.t2.1		1009445,1009120,1008143,1007376,1003810	1009875,1009209,1008843,1007940,1007088	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; contains an internal sequence gap
chr15	1009976	1011427	1010120	1010688	+	Cre15.g638955.t1.1	Cre15.g638955.t1.1		1009976	1011427	
chr15	1011429	1017745	1012177	1016988	-	OPR84	Cre15.g638956.t1.1		1016551,1015374,1015049,1013004,1011429	1017745,1015533,1015138,1014772,1012829	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; sequence gap at 3'-end truncates gene model
chr15	992161	997409	993438	997270	-	OPR88	Cre15.g639000.t1.2		996493,992161	997409,996204	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	984410	990871	984530	989188	+	Cre15.g639050.t1.1	Cre15.g639050.t1.1		984410,986740	986525,990871	
chr15	677166	686682	677298	686229	+	Cre15.g639056.t1.1	Cre15.g639056.t1.1		677166,679340,679976,680775,681221,681669,682315,682730,683470,684449,684776,684973	678997,679446,680482,680824,681329,681911,682416,683153,684005,684573,684831,686682	
chr15	973668	982149	975300	981736	-	FAP195	Cre15.g639100.t1.2		981943,981583,979928,979255,978567,977712,977461,973668	982149,981821,980824,979380,978650,977819,977571,977034	
chr15	967410	970911	967838	969976	+	Cre15.g639134.t1.2	Cre15.g639134.t1.2		967410,969877	969542,970911	
chr15	971344	973619	972966	973207	-	Cre15.g639136.t1.1	Cre15.g639136.t1.1		971344	973619	
chr15	951800	965251	952147	963980	+	Cre15.g639150.t1.1	Cre15.g639150.t1.1		951800,953176,953536,954026,954486,954958,955279,955913,956423,956872,957144,957346,957948,958276,958679,959392,959795,960462,961033,961427,962019,963268,963779	952498,953274,953616,954112,954568,955027,955425,956008,956473,957003,957155,957476,958065,958392,958747,959508,960145,960551,961096,961578,962127,963338,965251	
chr15	951800	965251	952147	963980	+	Cre15.g639150.t2.1	Cre15.g639150.t2.1		951800,953176,953536,954026,954486,954958,955279,955913,956423,956872,957346,957948,958276,958679,959392,959795,960462,961033,961427,962019,963268,963779	952498,953274,953616,954112,954568,955027,955425,956008,956473,957003,957476,958065,958392,958747,959508,960145,960551,961096,961578,962127,963338,965251	
chr15	942884	951479	944209	951011	-	Cre15.g639200.t1.1	Cre15.g639200.t1.1		951004,950548,949370,948878,948515,947979,947621,947153,946686,946328,945747,945384,944842,942884	951479,950695,950199,948936,948637,948057,947714,947253,946769,946356,945856,945447,945045,944566	
chr15	942884	951479	944209	951011	-	Cre15.g639200.t2.1	Cre15.g639200.t2.1		951004,950548,949370,948878,948515,947979,947621,947153,946686,946328,945747,945384,944842,942884	951479,950695,950199,948936,948637,948054,947714,947253,946769,946356,945856,945447,945045,944566	
chr15	938660	941367	938888	940456	+	NCL16	Cre15.g639300.t1.1		938660,938951,939961	938896,939593,941367	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; a pseudogene in many lab and wilds strains
chr15	932910	937551	933201	936810	+	NCL15	Cre15.g639304.t1.2		932910,934081	933520,937551	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; a pseudogene in CC-125, not CC-124 or S1D2
chr15	927920	932861	928179	931948	+	OPR91	Cre15.g639308.t1.2		927920,929260	928905,932861	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	907374	919709	908913	919343	-	Cre15.g639350.t1.1	Cre15.g639350.t1.1		919208,918621,917390,915406,907374	919709,918703,917441,916294,915167	
chr15	905830	907371	905917	906260	+	Cre15.g639379.t1.2	Cre15.g639379.t1.2		905830	907371	
chr15	894364	905219	895701	905039	-	Cre15.g639400.t1.2	Cre15.g639400.t1.2		904331,903259,902773,901873,901560,901126,900672,900486,899972,899245,898336,897499,897083,894364	905219,903802,902870,902394,901631,901224,900794,900506,900128,899378,898739,897825,897206,895785	
chr15	894364	905219	895701	905039	-	Cre15.g639400.t2.1	Cre15.g639400.t2.1		904331,903259,902773,901873,901560,901126,900672,899972,899245,898336,897499,897083,894364	905219,903802,902870,902394,901631,901224,900794,900128,899378,898739,897825,897206,895785	
chr15	850981	853614	851331	853443	-	Cre15.g639500.t1.2	Cre15.g639500.t1.2		851643,850981	853614,851427	
chr15	858455	878496	859224	875498	+	Cre15.g639503.t1.1	Cre15.g639503.t1.1		858455,859434,859756,860445,861630,862329,863077,863781,864305,864862,865775,867820,868333,869076,869413,869865,870287,870913,871350,871612,872734,873058,873395,874503,874900,875244	859359,859603,859888,861051,861976,862767,863330,863897,864760,864948,867272,867878,868426,869140,869529,869927,870596,871089,871396,871686,872760,873117,873450,874596,874951,878496	ts-lethal mutant was isolated (PMID 29743196)
chr15	1114620	1127045	1116162	1126903	-	Cre15.g639504.t1.1	Cre15.g639504.t1.1		1126897,1125354,1124828,1124150,1123426,1122200,1121828,1121298,1120835,1119705,1118587,1114620	1127045,1125764,1125043,1124386,1123567,1122275,1121906,1121450,1120972,1119823,1118979,1118092	
chr15	835795	846092	835846	844440	+	Cre15.g639550.t1.1	Cre15.g639550.t1.1		835795,836717,837164,838090,838653,839205,839977,840459,840708,841200,841677,841964,842601,843301,843701,844320	835980,836862,837255,838242,838737,839263,840115,840619,840761,841274,841748,842046,842668,843432,843807,846092	
chr15	835795	846092	835846	844440	+	Cre15.g639550.t2.1	Cre15.g639550.t2.1		835795,836717,837164,838090,838653,839205,839977,840459,841200,841677,841964,842601,843301,843701,844320	835980,836862,837255,838242,838737,839263,840115,840619,841274,841748,842046,842668,843432,843807,846092	
chr15	846535	850926	846584	850608	+	Cre15.g639552.t1.1	Cre15.g639552.t1.1		846535,847354,848601,849253,850468	846682,847687,848690,849304,850926	
chr15	830895	835747	831601	834327	+	Cre15.g639600.t1.1	Cre15.g639600.t1.1		830895,831664,832308	831609,831952,835747	
chr15	827979	830794	829337	830309	-	NCL12	Cre15.g639614.t1.2		830009,827979	830794,829871	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; part of Chr_15 NCL gene cluster; a pseudogene in 137c strains, not in S1D2
chr15	824443	827924	825446	827810	-	NCL11	Cre15.g639650.t1.1		827270,824443	827924,827141	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	820079	824234	821292	823877	-	OPR93	Cre15.g639700.t1.1		823502,820079	824234,823281	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	816029	820024	817226	819723	-	OPR94	Cre15.g639750.t1.1		819348,816029	820024,819128	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; NCL7, 8 and 9 seem absent in S1D2
chr15	808469	812224	809432	811665	-	OPR95	Cre15.g639800.t1.1		812024,811548,808469	812224,811855,811328	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; NCL7, 8 and 9 seem absent in S1D2
chr15	812279	815974	813476	815715	-	NCL8	Cre15.g639802.t1.1		815598,812279	815974,815378	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; sequence gap at 5'-end truncates v5.5 gene model; NCL7, 8 and 9 seem absent in S1D2
chr15	804529	808224	805491	808025	-	NCL6	Cre15.g639850.t1.2		807979,807532,804529	808224,807797,807411	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	797805	803096	797898	802037	+	Cre15.g639900.t1.1	Cre15.g639900.t1.1		797805,800016,801159,802009	799526,800715,801322,803096	
chr15	791835	796146	791920	795320	+	Cre15.g639950.t1.1	Cre15.g639950.t1.1		791835,793605,794582	793335,794331,796146	
chr15	782745	790456	782902	789364	+	FAP345	Cre15.g640000.t1.1		782745,783050,783569,784273,784647,785198,785591,787516	782949,783123,783645,784386,784949,785275,786691,790456	
chr15	766890	770994	767374	770913	-	Cre15.g640100.t1.2	Cre15.g640100.t1.2		769717,769345,768440,766890	770994,769414,768976,767881	
chr15	771312	782634	773111	782285	-	Cre15.g640101.t1.1	Cre15.g640101.t1.1		781363,779626,779292,778569,778025,777436,777025,776663,776238,775845,775539,775189,774642,771312	782634,781181,779411,778949,778264,777574,777088,776741,776333,775950,775653,775288,774771,773902	
chr15	763329	766834	764028	766759	-	Cre15.g640150.t1.1	Cre15.g640150.t1.1		764515,763329	766834,764175	
chr15	759089	763254	760367	763174	-	Cre15.g640152.t1.2	Cre15.g640152.t1.2		763153,761048,759089	763254,763114,760778	
chr15	742319	751724	744120	751332	-	Cre15.g640200.t1.1	Cre15.g640200.t1.1		751241,751105,750906,750671,750517,749494,747351,745413,742319	751724,751169,750971,750782,750542,749727,747405,745541,744719	
chr15	751835	753336	751954	753091	+	Cre15.g640203.t1.1	Cre15.g640203.t1.1		751835,752237,753064	752007,752522,753336	
chr15	756391	757672	756847	757428	+	Cre15.g640204.t1.1	Cre15.g640204.t1.1		756391,757428	757313,757672	
chr15	727553	737592	728377	737415	-	Cre15.g640250.t1.2	Cre15.g640250.t1.2		737356,737022,736114,734399,733859,733410,732567,732010,731880,731415,730882,730124,729543,729162,728698,727553	737592,737124,736239,734473,733978,733496,732644,732123,731939,731546,731182,730224,729689,729257,728808,728506	
chr15	727553	737592	728377	737415	-	Cre15.g640250.t2.1	Cre15.g640250.t2.1		737356,737022,736114,734399,733859,733410,732567,732010,731415,730882,730124,729543,729162,728698,727553	737592,737124,736239,734473,733978,733496,732644,732123,731546,731182,730224,729689,729257,728808,728506	
chr15	739325	742244	741746	741930	-	Cre15.g640251.t1.1	Cre15.g640251.t1.1		739325	742244	
chr15	686690	690305	687426	690118	-	OPR97	Cre15.g640350.t1.2		689578,686690	690305,689397	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster
chr15	690920	695055	692269	694877	-	OPR98	Cre15.g640400.t1.1		694349,690920	695055,694240	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; dominant mutation in this gene destabilizes petA mRNA
chr15	695380	697535	697182	697503	-	NCL18	Cre15.g640426.t1.1		697458,695380	697535,697368	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; part of Chr_15 NCL gene cluster but remote from sister genes NCL4, NCL5 and NCC2 and pseudogenized to near-disapperance
chr15	697680	700845	697989	700665	-	NCL5	Cre15.g640450.t1.2		700134,697680	700845,699957	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; part of Chr_15 NCL gene cluster
chr15	701530	706155	702331	705927	-	Cre15.g640502.t1.1	Cre15.g640502.t1.1		705879,705474,705257,704855,704459,704206,703697,703197,702849,702699,702469,701530	706155,705593,705292,705034,704482,704361,703741,703299,702963,702788,702605,702331	
chr15	706286	708097	706717	707180	+	Cre15.g640550.t1.2	Cre15.g640550.t1.2		706286,706708	706479,708097	
chr15	709076	712934	709590	712708	-	Cre15.g640600.t1.2	Cre15.g640600.t1.2		712192,711945,711402,710328,709076	712934,712109,711493,710433,709734	
chr15	713065	715756	713099	714717	+	Cre15.g640650.t1.1	Cre15.g640650.t1.1		713065,713304,713526,713969	713225,713418,713670,715756	
chr15	715815	721316	715933	721011	+	Cre15.g640651.t1.1	Cre15.g640651.t1.1		715815,718412,720039	717721,719587,721316	
chr15	721319	727504	722405	727125	-	Cre15.g640652.t1.1	Cre15.g640652.t1.1		727078,726460,724910,724152,723571,723190,722726,721319	727504,726706,725210,724252,723717,723285,722836,722534	
chr15	236333	246509	236408	245131	+	Cre15.g640750.t1.1	Cre15.g640750.t1.1		236333,236646,236978,239881,240242,240714,242376,242789,243392,243784	236450,236749,239590,239959,240325,241325,242451,243050,243503,246509	
chr15	248138	259172	248754	258679	-	Cre15.g640800.t1.2	Cre15.g640800.t1.2		254206,253460,252880,252399,252033,251653,251145,249390,248138	259172,253987,252957,252626,252112,251821,251198,250633,248754	
chr15	259323	267346	259473	265679	+	Cre15.g640850.t1.1	Cre15.g640850.t1.1		259323,260138,260445,260916,261487,262332,262859,263593,264128,265051	259760,260349,260576,261124,261641,262410,262936,263840,264757,267346	
chr15	269203	273024	269566	272239	+	Cre15.g640900.t1.2	Cre15.g640900.t1.2		269203,270274,270631,271087,271488,271765	269824,270310,270747,271125,271567,273024	
chr15	273337	279692	274063	279595	-	Cre15.g640901.t1.1	Cre15.g640901.t1.1		279438,279221,278920,277857,276890,276357,273337	279692,279306,279012,277933,277173,276445,274141	
chr15	1127186	1134327	1127307	1133254	+	Cre15.g641000.t1.2	Cre15.g641000.t1.2		1127186,1127819,1129232,1129673,1130413,1130828,1131455,1132044,1132236,1132505,1132930,1133221	1127409,1128055,1129390,1130087,1130501,1130882,1131573,1132100,1132340,1132567,1132986,1134327	
chr15	1127186	1134327	1127307	1133254	+	Cre15.g641000.t2.1	Cre15.g641000.t2.1		1127186,1127819,1129232,1129673,1130413,1130828,1131455,1132044,1132236,1132505,1132930,1133221	1127409,1128055,1129390,1130018,1130501,1130882,1131573,1132100,1132340,1132567,1132986,1134327	
chr15	1134360	1139905	1135280	1139808	-	Cre15.g641050.t1.2	Cre15.g641050.t1.2		1139433,1139102,1138706,1138461,1138136,1137992,1137683,1137444,1137140,1136727,1136365,1135866,1134360	1139905,1139179,1138774,1138527,1138233,1138072,1137737,1137541,1137232,1136872,1136437,1135994,1135625	
chr15	1140001	1157045	1142054	1156553	-	Cre15.g641100.t1.1	Cre15.g641100.t1.1		1156409,1155962,1154978,1153910,1153444,1153234,1152850,1151567,1150980,1150390,1150194,1149843,1149136,1148574,1148001,1147395,1146870,1146449,1145983,1145428,1144991,1143986,1140001	1157045,1156046,1155111,1154171,1153542,1153283,1153030,1152561,1151111,1150473,1150209,1149910,1149477,1148648,1148057,1147457,1146988,1146497,1146087,1145635,1145031,1144687,1143617	
chr15	1158594	1184129	1158897	1183359	-	Cre15.g641150.t1.1	Cre15.g641150.t1.1		1183689,1182858,1182014,1181704,1180694,1180182,1179740,1176617,1176225,1174962,1174591,1174382,1173045,1172529,1172056,1166368,1165876,1164173,1163647,1160101,1159525,1158594	1184129,1183570,1182610,1181781,1181363,1180233,1179975,1179379,1176321,1175082,1174705,1174444,1174182,1172847,1172127,1171792,1166138,1165660,1163981,1163391,1159867,1159278	
chr15	1184414	1190369	1185779	1189949	-	MCP28	Cre15.g641200.t1.2		1190258,1189937,1189445,1189175,1188699,1188323,1188090,1187674,1187254,1186817,1186406,1184414	1190369,1190166,1189595,1189242,1188792,1188399,1188155,1187793,1187301,1186952,1186482,1185878	
chr15	1190504	1195399	1191877	1195182	-	Cre15.g641250.t1.2	Cre15.g641250.t1.2		1195173,1195042,1194804,1193698,1193134,1192738,1190504	1195399,1195105,1194894,1193839,1193155,1192841,1191991	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase
chr15	1196670	1205371	1197004	1204727	+	Cre15.g641266.t1.1	Cre15.g641266.t1.1		1196670,1197576,1199939,1200533,1200953,1201367,1202467,1202915,1203795,1203932,1204538	1197071,1197630,1200098,1200589,1201072,1201456,1202585,1203029,1203836,1204051,1205371	May contain additional coding sequence in intronic N-island PMID: 27175017
chr15	1196680	1205371	1197004	1204727	+	Cre15.g641266.t2.1	Cre15.g641266.t2.1		1196680,1197576,1199939,1200533,1200953,1201367,1202467,1202915,1203932,1204538	1197071,1197630,1200098,1200589,1201072,1201456,1202585,1203029,1204051,1205371	May contain additional coding sequence in intronic N-island PMID: 27175017
chr15	1205407	1206689	1206379	1206578	-	Cre15.g641282.t1.1	Cre15.g641282.t1.1		1205407	1206689	
chr15	1205407	1206689	1206065	1206578	-	Cre15.g641282.t2.1	Cre15.g641282.t2.1		1206318,1205407	1206689,1206065	
chr15	1210230	1211691	1210291	1211521	+	Cre15.g641298.t1.1	Cre15.g641298.t1.1		1210230,1211513	1211426,1211691	
chr15	1211714	1214869	1214184	1214425	-	Cre15.g641350.t1.2	Cre15.g641350.t1.2		1214349,1211714	1214869,1214282	
chr15	1214921	1218618	1216217	1218174	-	Cre15.g641400.t1.1	Cre15.g641400.t1.1		1217949,1217301,1214921	1218618,1217425,1216491	
chr15	1219775	1227349	1221690	1227025	-	Cre15.g641451.t1.1	Cre15.g641451.t1.1		1226929,1226199,1225673,1225363,1224299,1222717,1219775	1227349,1226468,1225720,1225428,1224537,1223896,1222605	
chr15	1232600	1235561	1233380	1233980	+	Cre15.g641500.t1.2	Cre15.g641500.t1.2		1232600,1233785	1233383,1235561	
chr15	1236480	1254801	1236770	1253514	+	Cre15.g641527.t1.1	Cre15.g641527.t1.1		1236480,1237059,1240193,1241127,1241310,1244798,1244987,1245258,1245519,1245709,1245919,1246183,1246559,1246762,1247007,1247384,1247581,1247809,1248199,1248804,1251104,1251355,1251573,1251841,1252069,1252482,1253252,1253433	1236968,1237149,1240749,1241225,1241408,1244896,1245088,1245356,1245617,1245792,1246020,1246281,1246657,1246860,1247108,1247482,1247679,1247910,1248294,1248902,1251202,1251456,1251671,1251939,1252167,1252580,1253350,1254801	
chr15	1236480	1254801	1236770	1253514	+	Cre15.g641527.t2.1	Cre15.g641527.t2.1		1236480,1237059,1240193,1240543,1241127,1241310,1244798,1244987,1245258,1245519,1245709,1245919,1246183,1246559,1246762,1247007,1247384,1247581,1247809,1248199,1248804,1251104,1251355,1251573,1251841,1252069,1252482,1253252,1253433	1236968,1237149,1240404,1240749,1241225,1241408,1244896,1245088,1245356,1245617,1245792,1246020,1246281,1246657,1246860,1247108,1247482,1247679,1247910,1248294,1248902,1251202,1251456,1251671,1251939,1252167,1252580,1253350,1254801	
chr15	1255664	1260149	1256481	1259811	-	Cre15.g641600.t1.2	Cre15.g641600.t1.2		1260062,1259775,1258980,1257910,1257026,1255664	1260149,1259868,1259141,1258028,1257089,1256559	
chr15	1260250	1282381	1260668	1281270	+	HLM22	Cre15.g641650.t1.1		1260250,1262991,1263874,1264401,1265729,1267410,1267899,1270114,1270587,1271200,1272368,1273229,1273490,1273986,1274787,1275180,1275703,1276526,1277382,1278103,1278521,1279309,1279820,1280989	1262609,1263469,1264102,1265278,1267055,1267495,1269147,1270269,1270817,1271922,1272895,1273287,1273643,1274291,1274835,1275231,1276162,1276963,1277690,1278177,1278729,1279395,1280469,1282381	
chr15	1282754	1285349	1284635	1285036	-	Cre15.g641662.t1.1	Cre15.g641662.t1.1		1284887,1282754	1285349,1284816	
chr15	1285245	1287599	1287263	1287462	-	Cre15.g641674.t1.1	Cre15.g641674.t1.1		1285245	1287599	
chr15	1285588	1287599	1287263	1287462	-	Cre15.g641674.t2.1	Cre15.g641674.t2.1		1285588	1287599	
chr15	1287674	1290179	1288555	1290097	-	Cre15.g641700.t1.1	Cre15.g641700.t1.1		1289923,1289301,1287674	1290179,1289369,1288825	
chr15	1290463	1295729	1291456	1295483	-	Cre15.g641750.t1.1	Cre15.g641750.t1.1		1295417,1292784,1292461,1291928,1290463	1295729,1294515,1292531,1292024,1291620	
chr15	1296140	1300561	1297057	1299295	+	RAB8	Cre15.g641800.t1.2		1296140,1297017,1297174,1297686,1298028,1298685,1299172	1296930,1297089,1297274,1297807,1298159,1298726,1300561	Expressed protein. Similar to the RabE/Rab8 class of small GTPases; homologue of YptV2 [gi 549809 sp P36861 YPTV2_VOLCA]; single unique peptide
chr15	1301590	1313034	1301993	1310477	+	Cre15.g641850.t1.2	Cre15.g641850.t1.2		1301590,1302440,1302687,1305496,1306106,1307126,1307607,1307914,1308235,1308709,1309473,1309822,1310273	1302123,1302513,1305020,1305600,1306894,1307281,1307671,1308007,1308333,1308764,1309517,1309894,1313034	
chr15	1314908	1320231	1314939	1319809	+	Cre15.g641875.t1.1	Cre15.g641875.t1.1		1314908,1315774,1316417,1316956,1317416,1318684,1319175,1319695	1315217,1315861,1316585,1317044,1317517,1318791,1319228,1320231	a S-adenosyl-L-methionine-dependent methyltransferase
chr15	1325925	1330330	1328470	1329309	-	Cre15.g641901.t1.1	Cre15.g641901.t1.1		1330187,1329174,1325925	1330330,1329323,1328569	
chr15	1330475	1333030	1331414	1332918	-	Cre15.g641926.t1.1	Cre15.g641926.t1.1		1332669,1330475	1333030,1331729	
chr15	1336631	1348830	1336780	1348265	+	Cre15.g641950.t1.1	Cre15.g641950.t1.1		1336631,1336925,1337154,1337553,1338484,1339832,1344059,1345031	1336834,1337014,1337299,1338038,1339476,1343735,1344748,1348830	
chr15	1349201	1350532	1349233	1349774	+	Cre15.g641976.t1.2	Cre15.g641976.t1.2		1349201	1350532	
chr15	1350631	1354272	1350758	1353763	+	Cre15.g642000.t1.2	Cre15.g642000.t1.2		1350631,1351447,1351882,1352550,1352924,1353426,1353634	1350913,1351495,1351963,1352626,1352986,1353530,1354272	
chr15	1354585	1362200	1355532	1362167	-	Cre15.g642050.t1.2	Cre15.g642050.t1.2		1361828,1361226,1360501,1359485,1357891,1356945,1354585	1362200,1361361,1360967,1360188,1359139,1357553,1356615	
chr15	1372536	1375530	1372903	1375481	-	Cre15.g642213.t1.1	Cre15.g642213.t1.1		1375407,1374460,1374200,1373821,1373493,1373241,1372536	1375530,1374957,1374273,1374059,1373687,1373312,1373044	
chr15	1385011	1387162	1385645	1386169	+	Cre15.g642376.t1.1	Cre15.g642376.t1.1		1385011,1385615,1385966,1386169	1385185,1385731,1386129,1387162	
chr15	1402535	1404260	1402581	1403472	-	Cre15.g642539.t1.1	Cre15.g642539.t1.1		1403447,1403235,1402876,1402535	1404260,1403288,1402986,1402742	
chr15	1426387	1432478	1429965	1430149	+	Cre15.g642702.t1.1	Cre15.g642702.t1.1		1426387,1429901	1426853,1432478	
chr15	1891782	1893877	1892509	1893428	-	Cre15.g642800.t1.2	Cre15.g642800.t1.2		1893820,1893579,1893349,1893040,1891782	1893877,1893710,1893461,1893125,1892920	
chr15	1451250	1455946	1451657	1455179	-	Cre15.g642865.t1.1	Cre15.g642865.t1.1		1455154,1454942,1454583,1454303,1452915,1452013,1451250	1455946,1454995,1454693,1454393,1453255,1452742,1451657	
chr15	1893978	1897699	1894005	1894825	+	Cre15.g642875.t1.1	Cre15.g642875.t1.1		1893978,1894390	1894209,1897699	
chr15	1904098	1906677	1904456	1906260	-	Cre15.g642950.t1.2	Cre15.g642950.t1.2		1906252,1904831,1904098	1906677,1905599,1904684	
chr15	1906812	1908247	1907641	1907956	-	Cre15.g642976.t1.1	Cre15.g642976.t1.1		1907877,1906812	1908247,1907796	
chr15	1915741	1917337	1915988	1916583	-	Cre15.g643000.t1.2	Cre15.g643000.t1.2		1915741	1917337	
chr15	1456047	1470988	1456173	1470502	+	Cre15.g643028.t1.1	Cre15.g643028.t1.1		1456047,1456761,1457094,1468151,1468431,1468633,1469113,1469350	1456671,1456980,1460212,1468183,1468486,1468987,1469208,1470988	
chr15	1917928	1921949	1918655	1921499	+	Cre15.g643050.t1.2	Cre15.g643050.t1.2		1917928,1919782,1921009,1921213,1921409	1919352,1920878,1921059,1921302,1921949	
chr15	1470991	1483266	1471618	1482932	-	Cre15.g643191.t1.1	Cre15.g643191.t1.1		1482814,1482560,1482351,1481993,1481673,1480400,1477127,1475208,1474154,1472476,1470991	1483266,1482667,1482482,1482145,1481812,1480472,1479753,1476920,1475011,1474012,1472226	
chr15	1596482	1599127	1598335	1598844	-	Cre15.g643354.t1.1	Cre15.g643354.t1.1		1599037,1598730,1596482	1599127,1598969,1598665	
chr15	1801134	1805347	1801435	1804738	-	Cre15.g643384.t1.2	Cre15.g643384.t1.2		1805076,1804652,1804179,1803868,1803370,1802672,1802387,1801720,1801134	1805347,1804837,1804261,1803907,1803424,1802780,1802612,1802234,1801435	
chr15	1801134	1805347	1801435	1804738	-	Cre15.g643384.t2.1	Cre15.g643384.t2.1		1805076,1804652,1804179,1803868,1803409,1802672,1802387,1801720,1801134	1805347,1804837,1804261,1803907,1803424,1802780,1802612,1802234,1801435	
chr15	1821138	1822941	1821708	1822533	+	Cre15.g643385.t1.1	Cre15.g643385.t1.1		1821138,1821668,1822239	1821610,1822119,1822941	Putatively chloroplastic
chr15	1826127	1838007	1827622	1837460	-	Cre15.g643386.t1.1	Cre15.g643386.t1.1		1837444,1834678,1833440,1833165,1830199,1829506,1828818,1827753,1826127	1838007,1837242,1834491,1833200,1832979,1829884,1829404,1828370,1827628	
chr15	1840758	1842529	1840853	1842325	+	Cre15.g643387.t1.1	Cre15.g643387.t1.1		1840758,1841112,1841591,1842009,1842169	1840949,1841429,1841889,1842069,1842529	
chr15	1842542	1846977	1843233	1846913	-	Cre15.g643388.t1.1	Cre15.g643388.t1.1		1846782,1846273,1845969,1844788,1844553,1844312,1844082,1843764,1842542	1846977,1846587,1846055,1845274,1844713,1844443,1844194,1843849,1843644	
chr15	1847088	1851148	1847161	1850610	+	Cre15.g643389.t1.1	Cre15.g643389.t1.1		1847088,1849050,1850610	1848871,1849895,1851148	
chr15	1862558	1865779	1862583	1862898	+	Cre15.g643390.t1.1	Cre15.g643390.t1.1		1862558,1862763	1862664,1865779	
chr15	1865788	1868809	1865906	1866216	+	Cre15.g643391.t1.1	Cre15.g643391.t1.1		1865788	1868809	
chr15	1866198	1869223	1866267	1866939	+	Cre15.g643392.t1.1	Cre15.g643392.t1.1		1866198,1866555,1866934	1866312,1866678,1869223	
chr15	1868878	1871554	1868921	1869111	+	Cre15.g643393.t1.1	Cre15.g643393.t1.1		1868878	1871554	
chr15	1875608	1876623	1875933	1876111	+	Cre15.g643394.t1.1	Cre15.g643394.t1.1		1875608	1876623	
chr15	1889208	1891769	1889280	1891601	+	Cre15.g643395.t1.1	Cre15.g643395.t1.1		1889208,1889577,1890388,1890867,1891285,1891445	1889377,1889857,1890705,1891165,1891345,1891769	
chr15	1795204	1796877	1795544	1796526	-	Cre15.g643400.t1.2	Cre15.g643400.t1.2		1796497,1796118,1795832,1795204	1796877,1796388,1795967,1795735	
chr15	1765920	1767161	1766154	1766350	+	Cre15.g643499.t1.2	Cre15.g643499.t1.2		1765920	1767161	
chr15	1759678	1765830	1759855	1764882	+	Cre15.g643500.t1.1	Cre15.g643500.t1.1		1759678,1759933,1760323,1760566,1761147,1761692,1762515,1763144,1763550,1763916,1764365	1759865,1760183,1760454,1760767,1761361,1761916,1762724,1763380,1763633,1764019,1765830	
chr15	1768428	1794551	1768696	1793032	+	COP9	Cre15.g643503.t1.1		1768428,1769152,1769767,1770392,1771038,1771419,1771860,1772171,1772407,1773032,1773495,1774400,1775291,1775648,1776442,1776919,1777238,1778366,1778795,1779285,1779960,1780637,1781411,1781602,1781744,1781869,1782415,1782695,1783331,1783732,1784284,1784920,1785553,1785919,1786549,1788380,1788554,1788910,1789861,1790294,1791254,1791951,1792295,1792522	1768959,1769286,1769881,1770452,1771081,1771511,1771915,1772246,1772499,1773061,1773572,1774489,1775368,1775752,1776486,1776986,1777957,1778468,1778896,1779383,1780028,1780681,1781518,1781652,1781794,1781913,1782536,1782749,1783387,1783837,1784377,1785007,1785609,1786092,1787241,1788479,1788673,1789748,1790181,1791131,1791637,1792213,1792432,1794551	Histidine kinase rhodopsin 5; contains bacteriorhodopsin, Histine kinase, response regulator receiver and Guanylate/adenylate cyclase catalytic domains
chr15	1768428	1794551	1768696	1793032	+	COP9	Cre15.g643503.t2.1		1768428,1769152,1769767,1770392,1771038,1771419,1771860,1772171,1772407,1773032,1773495,1774400,1775291,1775648,1776442,1776919,1777238,1778366,1778795,1779285,1779960,1780637,1781411,1782415,1782695,1783331,1783732,1784284,1784920,1785553,1785919,1786549,1788380,1788554,1788910,1789861,1790294,1791254,1791951,1792295,1792522	1768959,1769286,1769881,1770452,1771081,1771511,1771915,1772246,1772499,1773061,1773572,1774489,1775368,1775752,1776486,1776986,1777957,1778468,1778896,1779383,1780028,1780681,1781518,1782536,1782749,1783387,1783837,1784377,1785007,1785609,1786092,1787241,1788479,1788673,1789748,1790181,1791131,1791637,1792213,1792432,1794551	Histidine kinase rhodopsin 5; contains bacteriorhodopsin, Histine kinase, response regulator receiver and Guanylate/adenylate cyclase catalytic domains
chr15	1755799	1758707	1757884	1758095	-	Cre15.g643515.t1.2	Cre15.g643515.t1.2		1755799	1758707	
chr15	1599252	1600847	1600362	1600669	-	Cre15.g643517.t1.1	Cre15.g643517.t1.1		1600493,1599252	1600847,1600399	
chr15	1745608	1750554	1745664	1749685	+	PDX1	Cre15.g643550.t1.2		1745608,1745808,1746711,1747042,1747589,1748082,1748732,1749562	1745703,1746092,1746761,1747122,1747666,1748193,1748853,1750554	Involved in vitamin B6 biosynthesis
chr15	1736932	1745487	1738200	1745363	-	SUFB	Cre15.g643600.t1.2		1744700,1743999,1742903,1742499,1740998,1740541,1740161,1739535,1739121,1738686,1736932	1745487,1744076,1742965,1742585,1741068,1740637,1740268,1739645,1739216,1738823,1738281	ABC-type system involved in Fe-S cluster assembly, likely localized to plastid
chr15	1603262	1605787	1605290	1605597	-	Cre15.g643680.t1.1	Cre15.g643680.t1.1		1605421,1603262	1605787,1605327	
chr15	1706402	1715237	1709164	1714241	-	RLS6	Cre15.g643700.t1.1		1714507,1710323,1709911,1706402	1715237,1714254,1709973,1709272	Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342).
chr15	1715907	1719017	1718456	1718658	-	Cre15.g643702.t1.1	Cre15.g643702.t1.1		1715907	1719017	
chr15	1719082	1727107	1719396	1726363	-	RLS9	Cre15.g643703.t1.1		1726159,1725527,1725050,1724449,1723581,1722877,1722557,1720884,1720298,1719082	1727107,1725601,1725136,1724569,1723691,1723041,1722640,1720981,1720350,1719760	RNA-binding protein of unknown function, but may be related to RLS6, a homolog of the V. carteri RegA transcriptional repressor
chr15	1734178	1735861	1734518	1735038	+	Cre15.g643704.t1.1	Cre15.g643704.t1.1		1734178,1734711	1734572,1735861	
chr15	1703598	1704928	1703630	1703922	+	Cre15.g643740.t1.2	Cre15.g643740.t1.2		1703598	1704928	
chr15	1697678	1703529	1697872	1701592	+	Cre15.g643750.t1.2	Cre15.g643750.t1.2		1697678,1698284,1698483,1699347,1699892,1701472	1698067,1698358,1699081,1699584,1701091,1703529	
chr15	1654662	1657977	1655684	1657867	-	Cre15.g643850.t1.2	Cre15.g643850.t1.2		1657829,1657052,1656656,1656253,1654662	1657977,1657252,1656906,1656501,1656046	
chr15	1660478	1666569	1660814	1665326	+	Cre15.g644050.t1.1	Cre15.g644050.t1.1		1660478,1661004,1661281,1662000,1663144,1663495,1664226,1664638,1665182	1660832,1661076,1661348,1662121,1663198,1663853,1664307,1664862,1666569	
chr15	1667769	1696876	1667879	1695629	+	Cre15.g644051.t1.1	Cre15.g644051.t1.1		1667769,1668533,1668985,1669425,1670042,1670657,1671324,1691707,1692276,1693023,1693434,1694287,1694689,1695031,1695527	1668275,1668593,1669060,1669468,1670124,1670752,1671407,1691827,1692856,1693076,1693592,1694355,1694787,1695102,1696876	
chr16	785424	802855	795544	802011	+	Cre16.g647500.t1.1	Cre16.g647500.t1.1		785424,795456,796032,796441,796819,797303,797710,798688,799407,799944,800335,800648,801058,801343,801671	785438,795716,796123,796497,796899,797383,798093,798768,799452,800026,800421,800685,801136,801443,802855	
chr16	785424	802855	795544	802011	+	Cre16.g647500.t2.1	Cre16.g647500.t2.1		785424,795456,796032,796441,796819,797303,799407,799944,800335,800648,801058,801343,801671	785438,795716,796123,796497,796899,797383,799452,800026,800421,800685,801136,801443,802855	
chr16	802904	805315	802961	804461	+	NRX4	Cre16.g647534.t1.2		802904,803434,803843,804376	803113,803554,804048,805315	related to animal thioredoxin, nucleoredoxin
chr16	802904	805315	802961	804376	+	NRX4	Cre16.g647534.t2.1		802904,803434,803843,804376	803113,803554,804086,805315	related to animal thioredoxin, nucleoredoxin
chr16	805318	812073	805647	811816	-	HEL60	Cre16.g647550.t1.1		811804,811112,810766,810420,809759,809030,808155,807219,806868,806185,805318	812073,811585,810915,810596,810094,809563,808391,807908,806918,806494,805940	
chr16	812123	834743	812827	830231	-	Cre16.g647602.t1.1	Cre16.g647602.t1.1		834156,829657,829082,828644,827702,827393,826868,826330,825777,825255,824908,823764,823047,822397,821898,820947,820528,820243,819887,819312,818976,818613,818210,817918,817639,817310,816520,816104,815906,815531,815060,814584,813445,812123	834743,830248,829140,828694,827746,827443,827080,826479,825853,825391,824976,823834,823474,822481,821967,821255,820658,820347,820105,819437,819020,818729,818249,818018,817720,817371,817056,816178,815968,815689,815176,814712,813606,813199	
chr16	820668	834743	820929	830231	-	Cre16.g647602.t2.1	Cre16.g647602.t2.1		834156,829657,829082,828644,827702,827393,826868,826330,825777,825255,824908,823764,823047,822397,821898,820668	834743,830248,829140,828694,827746,827443,827080,826479,825853,825391,824976,823834,823474,822481,821967,821255	
chr16	834790	841003	835050	837898	-	Cre16.g647700.t1.1	Cre16.g647700.t1.1		840226,837784,837617,837338,836934,836609,836340,835831,834790	841003,837923,837670,837373,837020,836662,836375,835986,835602	
chr16	841104	843265	841488	842008	+	Cre16.g647750.t1.2	Cre16.g647750.t1.2		841104	843265	
chr16	843314	853885	843481	852499	+	Cre16.g647800.t1.1	Cre16.g647800.t1.1		843314,844285,844804,845322,846175,847835,848315,848703,851834,852313	843493,844542,844863,845459,847359,847944,848519,851567,851932,853885	
chr16	853934	857765	854239	856712	+	Cre16.g647850.t1.1	Cre16.g647850.t1.1		853934,854478,854866,855668,856367	854252,854559,855291,855770,857765	
chr16	857767	862023	858978	861784	-	CSC8	Cre16.g647901.t1.1		861683,860883,860725,860194,859563,859154,857767	862023,860970,860790,860500,859718,859269,859089	function unknown; homologs in Gonium, not Volvox
chr16	862124	865725	862379	865082	+	Cre16.g647950.t1.1	Cre16.g647950.t1.1		862124,862763,863150,863490,863912,864143,864364,864602,864780,865027	862401,862964,863201,863591,863956,864223,864477,864673,864823,865725	
chr16	865738	870130	867029	870007	-	Cre16.g648000.t1.2	Cre16.g648000.t1.2		869745,869472,869198,868844,868529,868175,867937,867634,867397,865738	870130,869549,869284,868931,868617,868321,868019,867676,867482,867176	
chr16	870344	872525	870688	871781	+	Cre16.g648050.t1.2	Cre16.g648050.t1.2		870344,870932,871262,871578	870722,871032,871325,872525	
chr16	872528	876493	873270	876158	-	Cre16.g648100.t1.1	Cre16.g648100.t1.1		876110,875878,875577,875320,874718,874347,873677,872528	876493,876014,875709,875406,874823,874414,874154,873458	
chr16	876824	885874	877313	885344	+	Cre16.g648150.t1.1	Cre16.g648150.t1.1		876824,877284,877708,877896,878118,878490,878847,879150,879588,879852,880246,880511,881266,881533,882027,882657,883144,883498,883946,884240,884782,884967,885236	877123,877510,877768,877965,878160,878522,878884,879250,879683,879926,880317,880606,881307,881875,882415,882871,883265,883574,884047,884506,884822,885048,885874	
chr16	886828	893823	887259	893792	-	CYP744C1	Cre16.g648200.t1.2		893705,893490,892872,892515,892225,891670,891290,890250,889581,889302,888973,888586,888353,887954,886828	893823,893544,892975,892582,892317,891876,891482,890387,889898,889405,889036,888707,888447,888048,887418	Cytochrome P450. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in animals), followed by CYP3 sequences. The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan.
chr16	887778	893823	887845	893792	-	CYP744C1	Cre16.g648200.t3.1		893705,893490,892872,892515,892225,891670,891290,890250,889581,889302,888973,888586,888353,887778	893823,893544,892975,892582,892317,891876,891482,890387,889898,889405,889036,888707,888447,888048	Cytochrome P450. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in animals), followed by CYP3 sequences. The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan.
chr16	886828	887713	887259	887633	-	CYP744C1	Cre16.g648200.t2.1		887600,886828	887713,887418	Cytochrome P450. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in animals), followed by CYP3 sequences. The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan.
chr16	893898	899033	894242	898890	-	Cre16.g648250.t1.1	Cre16.g648250.t1.1		898666,897556,897225,896736,895803,895389,894660,893898	899033,898372,897328,897066,896429,895649,895107,894475	
chr16	899398	900503	900138	900367	-	Cre16.g648288.t1.2	Cre16.g648288.t1.2		899398	900503	
chr16	901131	907283	901948	906865	-	PHT6	Cre16.g648300.t1.2		906283,905869,905424,904968,904475,904149,903752,903099,902791,902382,901131	907283,905949,905587,905173,904742,904218,903874,903258,902877,902502,902012	Na+-dependent inorganic phosphate cotransporter
chr16	908175	917655	908291	915755	+	PDY2	Cre16.g648350.t1.1		908175,908625,909571,909971,910279,910876,911150,912385,913054,913685,913967,914286,914773,915226,915677	908369,909314,909682,910014,910577,910951,911240,912536,913180,913749,914038,914450,915053,915436,917655	
chr16	917658	920083	917681	919916	-	Cre16.g648400.t1.1	Cre16.g648400.t1.1		919707,918899,917658	920083,919550,918692	
chr16	920158	932273	921679	931397	-	Cre16.g648451.t1.1	Cre16.g648451.t1.1		931841,930078,929886,929606,929245,928847,928436,924379,924199,923832,923507,923129,922366,921956,920158	932273,931551,929935,929720,929412,929003,928616,928194,924233,923950,923581,923242,922430,922017,921829	
chr16	933888	934733	934289	934698	-	HTR23	Cre16.g648500.t1.2		933888	934733	Replication linked H3; histone gene cluster XXIII (type 43)
chr16	934834	936435	935120	935433	+	HFO23	Cre16.g648550.t1.2		934834	936435	Replication linked H4; histone gene cluster XXIII (type 43)
chr16	936438	941663	936796	940947	-	Cre16.g648600.t1.1	Cre16.g648600.t1.1		941183,940026,939673,939299,936438	941663,941072,939834,939446,939069	
chr16	943268	947533	945111	947424	-	Cre16.g648650.t1.1	Cre16.g648650.t1.1		947112,946260,943268	947533,946993,946063	
chr16	947717	957533	948573	957452	-	Cre16.g648700.t1.1	Cre16.g648700.t1.1		957335,957001,956474,956013,955589,955115,954897,954398,954052,953674,953398,953071,952783,952566,952237,951974,951604,951316,950281,950016,949600,949323,948937,947717	957533,957074,956513,956189,955690,955262,954937,954492,954097,953746,953462,953175,952862,952620,952294,952032,951670,951428,950373,950104,949632,949381,948995,948654	
chr16	947717	957533	948573	957452	-	Cre16.g648700.t2.1	Cre16.g648700.t2.1		957335,957001,956474,956043,955589,955115,954897,954398,954052,953674,953398,953071,952783,952566,952237,951974,951604,951316,950281,950016,949600,949323,948937,947717	957533,957074,956513,956189,955690,955262,954937,954492,954097,953746,953462,953175,952862,952620,952294,952032,951670,951428,950373,950104,949632,949381,948995,948654	
chr16	957974	969555	958738	967752	+	Cre16.g648750.t1.1	Cre16.g648750.t1.1		957974,959664,960201,960695,961183,961777,962307,963025,963578,964892,966453	959200,959969,960409,960949,961451,962097,962650,963191,964680,966261,969555	
chr16	969574	971248	970036	971050	-	Cre16.g648800.t1.1	Cre16.g648800.t1.1		970495,969574	971248,970219	
chr16	971298	974673	971685	974613	-	ADS1	Cre16.g648850.t1.2		974556,974005,973711,973326,972985,972701,972204,971298	974673,974259,973822,973488,973042,972778,972367,972031	
chr16	974784	983498	975060	982792	+	Cre16.g648900.t1.1	Cre16.g648900.t1.1		974784,975539,975831,976226,976685,977127,977677,977971,978297,978578,979058,979660,979940,980680,981258,981871,982295,982689	975282,975610,975908,976359,976727,977194,977792,978023,978377,978638,979201,979729,980063,980754,981487,981961,982362,983498	
chr16	983538	987243	983863	986576	-	Cre16.g648950.t1.1	Cre16.g648950.t1.1		986711,986474,986178,985867,985323,984933,984241,983538	987243,986592,986357,985967,985681,985130,984606,984042	
chr16	987298	999403	989458	999095	-	Cre16.g649000.t1.1	Cre16.g649000.t1.1		998992,998718,998072,997647,997332,997011,996537,996040,995761,995313,994853,994148,993468,993223,992910,992386,992101,991769,991386,991124,987298	999403,998920,998485,997816,997390,997105,996740,996278,995896,995426,994912,994648,993727,993293,992992,992670,992178,991856,991523,991174,990915	
chr16	1000680	1011875	1001857	1011489	-	CYG38	Cre16.g649050.t1.1		1011478,1011089,1010674,1010408,1009902,1009411,1009009,1008733,1008463,1008113,1007724,1007331,1007037,1006602,1006206,1005936,1005662,1005064,1004827,1004626,1004342,1003994,1003536,1002240,1000680	1011875,1011102,1010732,1010455,1009967,1009530,1009056,1008822,1008531,1008265,1007864,1007384,1007177,1006676,1006347,1006014,1005752,1005126,1004885,1004681,1004423,1004120,1003702,1003287,1002067	similar to guanylate cyclase soluble, beta-2 chain(GCS-beta-2) [Bos taurus]
chr16	1000680	1011875	1001857	1011489	-	CYG38	Cre16.g649050.t2.1		1011478,1011089,1010674,1010408,1009902,1009411,1009009,1008733,1008463,1008113,1007724,1007331,1007037,1006602,1006206,1005936,1005662,1004827,1004626,1004342,1003994,1003536,1002240,1000680	1011875,1011102,1010732,1010455,1009967,1009530,1009056,1008822,1008531,1008265,1007864,1007384,1007177,1006676,1006347,1006014,1005752,1004885,1004681,1004423,1004120,1003702,1003287,1002067	similar to guanylate cyclase soluble, beta-2 chain(GCS-beta-2) [Bos taurus]
chr16	1011969	1018074	1012173	1017019	+	MAPKKK13	Cre16.g649100.t1.2		1011969,1013049,1013299,1013635,1013808,1014157,1014333,1014685,1015014,1015278,1015675,1015984,1016345,1016743	1012782,1013150,1013376,1013670,1013984,1014213,1014459,1014823,1015104,1015476,1015778,1016184,1016542,1018074	
chr16	1018190	1023768	1018859	1022916	-	Cre16.g649150.t1.1	Cre16.g649150.t1.1		1023409,1022858,1022518,1022228,1021811,1021400,1020811,1020374,1018190	1023768,1022998,1022588,1022288,1021911,1021490,1021011,1020530,1020069	
chr16	1023866	1027264	1024031	1026821	+	Cre16.g649200.t1.2	Cre16.g649200.t1.2		1023866,1024347,1024895,1025357,1025616,1026317,1026546,1026746	1024192,1024673,1024979,1025397,1025676,1026393,1026612,1027264	
chr16	1027400	1031535	1028186	1030279	-	Cre16.g649250.t1.1	Cre16.g649250.t1.1		1031360,1031229,1030772,1030254,1029830,1029584,1029236,1028737,1027400	1031535,1031288,1030870,1030320,1029927,1029667,1029268,1028820,1028342	
chr16	1032346	1036382	1032974	1035070	+	Cre16.g649300.t1.2	Cre16.g649300.t1.2		1032346,1032937,1033251,1033538,1033889,1034198,1034540,1034931	1032813,1032977,1033358,1033606,1033933,1034386,1034697,1036382	
chr16	1038350	1042595	1038962	1042491	-	Cre16.g649350.t1.1	Cre16.g649350.t1.1		1041983,1041685,1041301,1040935,1040469,1040169,1039428,1038350	1042595,1041722,1041474,1040997,1040563,1040243,1039479,1039103	
chr16	1042756	1048028	1042883	1047279	+	CPLD16	Cre16.g649400.t1.2		1042756,1044117,1044648,1044992,1045549,1045970,1046288,1046524,1046962,1047165	1043806,1044272,1044743,1045220,1045753,1046094,1046367,1046611,1047003,1048028	Putative rRNA (guanine-N2-)-methyltransferase.  Plant-lineage-and-diatoms conserved expressed protein;organelle-targeted; Arabidopsis homolog has RNA binding activity
chr16	1048030	1056135	1050517	1055361	-	Cre16.g649433.t1.1	Cre16.g649433.t1.1		1055309,1051258,1050845,1048030	1056135,1054873,1050878,1050595	
chr16	1056792	1067035	1057715	1066865	-	CAX5	Cre16.g649466.t1.1		1066850,1066350,1065950,1065403,1064717,1064431,1063851,1063132,1062666,1062244,1061866,1061344,1060990,1057960,1056792	1067035,1066400,1066081,1065505,1064996,1064497,1063951,1063432,1062782,1062349,1061918,1061485,1061135,1058030,1057752	putative Ca2+/H+ antiporter, related to plants Ca2+/H+ antiporters (AtCAX1-6); May contain additional coding sequence in exotic N-island PMID: 27175017
chr16	1068086	1071445	1068527	1071131	-	Cre16.g649500.t1.1	Cre16.g649500.t1.1		1071068,1070789,1070411,1070086,1069816,1069301,1068086	1071445,1070824,1070473,1070139,1069851,1069462,1069073	
chr16	1075970	1081475	1076679	1081290	-	Cre16.g649550.t1.1	Cre16.g649550.t1.1		1080909,1080127,1079795,1079515,1078626,1078219,1077676,1075970	1081475,1080681,1079830,1079601,1079363,1078418,1077901,1077501	
chr16	1081990	1088125	1082373	1087887	-	PUF4	Cre16.g649600.t1.2		1087462,1087170,1086731,1086204,1085812,1085173,1084825,1084174,1083764,1083405,1081990	1088125,1087263,1086913,1086499,1085974,1085304,1085002,1084402,1083929,1083497,1082907	Puf protein: contains pumilio-family RNA binding domains (PUF). Puf protein family thought to repress gene expression by affecting mRNA translation or stability.
chr16	1088305	1090039	1089211	1089958	-	Cre16.g649650.t1.1	Cre16.g649650.t1.1		1089667,1088305	1090039,1089394	Universal stress protein, adenine nucleotide alpha hydrolase-like.  Bacterial homologs enhance the rate of cell survival when exposed to stress agents
chr16	1090157	1096589	1090271	1095369	+	Cre16.g649700.t1.1	Cre16.g649700.t1.1		1090157,1090804,1091163,1091770,1092004,1092277,1092868,1093288,1093725,1094142,1094524,1094742,1095126	1090572,1090905,1091275,1091832,1092050,1092358,1092995,1093369,1093832,1094248,1094582,1094848,1096589	
chr16	1097356	1102452	1097974	1099989	+	Cre16.g649750.t1.1	Cre16.g649750.t1.1		1097356,1098370,1098586,1099107,1099919	1098272,1098458,1098792,1099717,1102452	
chr16	1104270	1115895	1107217	1115390	-	PPR3	Cre16.g649800.t1.1		1115629,1114110,1113546,1113174,1112718,1112331,1111872,1111316,1110133,1109782,1109250,1108632,1107951,1107557,1104270	1115895,1115463,1113714,1113263,1112828,1112420,1112090,1111396,1110581,1109935,1109474,1108955,1108238,1107750,1107377	PentratricoPeptide Repeat protein with a SmR-like and a cyclin domain
chr16	1115990	1124735	1116837	1124524	-	Cre16.g649833.t1.1	Cre16.g649833.t1.1		1124481,1123518,1123242,1120788,1120412,1119796,1119222,1118572,1117234,1115990	1124735,1124285,1123388,1122920,1120533,1119820,1119589,1118621,1117357,1116861	
chr16	1115990	1124735	1116837	1124524	-	Cre16.g649833.t2.1	Cre16.g649833.t2.1		1124481,1123518,1123242,1120788,1120412,1119796,1119222,1118572,1117234,1115990	1124735,1124285,1123334,1122920,1120533,1119820,1119589,1118621,1117357,1116861	
chr16	1125587	1126203	1125741	1126150	-	HTR24	Cre16.g649900.t1.1		1125587	1126203	Replication linked H3; histone gene cluster XXIV (type 43)
chr16	1126366	1127397	1126506	1126819	+	HFO24	Cre16.g649950.t1.2		1126366	1127397	Replication linked H4; histone gene cluster XXIV (type 43)
chr16	1127446	1129606	1127938	1129066	+	Cre16.g650000.t1.2	Cre16.g650000.t1.2		1127446,1128274,1128517,1128778	1128143,1128407,1128591,1129606	
chr16	1129610	1133545	1130388	1133404	-	Cre16.g650050.t1.2	Cre16.g650050.t1.2		1133318,1132848,1132335,1131959,1131623,1131216,1130866,1129610	1133545,1133022,1132424,1132011,1131677,1131246,1130969,1130508	
chr16	1133646	1135236	1133726	1134572	+	PETN	Cre16.g650100.t1.2		1133646,1134118,1134476	1133828,1134213,1135236	Small subunit of plastoquinol-plastocyanin oxido-reductase, chloroplast precursor; ortholog in Volvox is germline-specific and a putative target of RegA repression
chr16	1135953	1141425	1136411	1140808	-	Cre16.g650151.t1.1	Cre16.g650151.t1.1		1140667,1140198,1139576,1138704,1138277,1137894,1137412,1136864,1135953	1141425,1140305,1139667,1139250,1138353,1138003,1137632,1137040,1136513	
chr16	1141576	1145486	1141777	1144737	+	MCP17	Cre16.g650200.t1.1		1141576,1141988,1142441,1143213,1143812,1144179,1144515	1141898,1142110,1142565,1143464,1143991,1144247,1145486	Possible folate carrier
chr16	1145500	1146315	1145804	1146117	-	HFO25	Cre16.g650250.t1.2		1145500	1146315	Replication linked H4; histone gene cluster XXV (type 43)
chr16	1146408	1147727	1146465	1146874	+	HTR25	Cre16.g650300.t1.2		1146408	1147727	Replication linked H3; histone gene cluster XXV (type 43)
chr16	1147786	1152807	1147951	1151891	+	Cre16.g650350.t1.1	Cre16.g650350.t1.1		1147786,1148282,1148597,1148950,1149505,1149865,1150818,1151375,1151782	1148075,1148382,1148704,1149027,1149606,1150334,1150955,1151527,1152807	
chr16	1152856	1156487	1153200	1156442	+	CPL20	Cre16.g650400.t1.1		1152856,1153363,1153541,1153925,1154424,1154675,1155429,1156000	1153248,1153424,1153730,1154014,1154498,1155185,1155798,1156487	Hypothetical zinc-dependent DNA-binding protein. Gene product similar to PLATZ1 from peas [gi:16117798, PMID: 116698] a plant-specific zinc-dependent DNA-binding protein responsible for A/T-rich sequence-mediated transcriptional repression.
chr16	1156546	1159547	1156575	1156822	+	Cre16.g650425.t1.1	Cre16.g650425.t1.1		1156546	1159547	
chr16	1159826	1162585	1160229	1162456	-	FAP219	Cre16.g650450.t1.2		1162432,1162199,1161691,1161151,1160743,1159826	1162585,1162363,1161822,1161312,1160778,1160412	Flagellar Associated Protein, found in the flagellar proteome
chr16	1162632	1166753	1163042	1166653	-	Cre16.g650500.t1.2	Cre16.g650500.t1.2		1166376,1165814,1164768,1164227,1163795,1163394,1162632	1166753,1165938,1164895,1164379,1163882,1163465,1163093	
chr16	1166896	1169717	1166940	1169137	+	FAP103	Cre16.g650550.t2.1		1166896,1167053,1167656,1168349,1169014	1166943,1167126,1167784,1168472,1169717	Flagellar Associated Protein similar to nucleoside diphosphate kinase, found in the flagellar proteome
chr16	1166895	1169403	1166940	1169137	+	FAP103	Cre16.g650550.t1.2		1166895,1167053,1167656,1168349,1169014	1166943,1167126,1167784,1168472,1169403	Flagellar Associated Protein similar to nucleoside diphosphate kinase, found in the flagellar proteome
chr16	1169953	1179377	1171250	1178875	-	MST1	Cre16.g650600.t1.2		1178745,1178169,1177723,1177311,1176915,1176487,1176012,1175633,1175134,1174608,1174457,1174300,1173860,1173284,1172996,1172767,1172368,1172061,1169953	1179377,1178488,1178061,1177658,1177244,1176855,1176416,1175950,1175574,1175069,1174523,1174392,1174156,1173804,1173209,1172934,1172656,1172260,1171903	Mastigoneme-like protein; 240 kDa flagellar protein in Chlamydomonas; Genbank entry AF508983. Mastigonemes are protein projections from the flagellar membrane. Found in the flagellar proteome [PMID: 15998802]
chr16	1179462	1187117	1179810	1187050	-	Cre16.g650625.t1.1	Cre16.g650625.t1.1		1186895,1186304,1185710,1185136,1184685,1184268,1184046,1183338,1182384,1182162,1181664,1180983,1180522,1179462	1187117,1186397,1186046,1185491,1184954,1184525,1184126,1183850,1183199,1182266,1181842,1181491,1180781,1180317	
chr16	1187228	1193739	1188071	1193150	+	AGT3	Cre16.g650650.t1.1		1187228,1187918,1188594,1189734,1190117,1190575,1190916,1191301,1191747,1192090,1192458,1192939	1187670,1188326,1189103,1189858,1190258,1190625,1191009,1191473,1191950,1192136,1192589,1193739	probable alanine-glyoxylate aminotransferase, most similar to the Mammalian AGT2-like enzyme; plant and mammalian homologues are usually located in the peroxisome, but the Chlamydomonas AGT3 protein misses a C-terminal PTS1 peroxisomal targeting sequence; TargetP suggests mitochondrial or chloroplast location
chr16	1193848	1200466	1193877	1199794	+	Cre16.g650700.t1.1	Cre16.g650700.t1.1		1193848,1194134,1194402,1194775,1195380,1195884,1196361,1196866,1197155,1197657,1198106,1198333,1199104,1199646	1194061,1194228,1194479,1194927,1195744,1195979,1196580,1196904,1197357,1197812,1198187,1198934,1199334,1200466	
chr16	1201218	1203629	1201430	1203606	+	FAP268	Cre16.g650750.t1.1		1201218,1201563,1202026,1202252,1202647,1203384	1201475,1201771,1202068,1202353,1202793,1203629	Flagellar Associated Protein, found in the flagellar proteome; Similar to Calcium-Binding Protein
chr16	1203632	1205417	1204509	1205062	-	TIM13	Cre16.g650800.t1.1		1204996,1204861,1204697,1203632	1205417,1204905,1204801,1204548	Mitochondrial import inner membrane translocase subunit TIM13. Mitochondrial intermembrane chaperone that participates in the import and insertion of some transmembrane proteins into the mitochondrial inner membrane.
chr16	1209072	1213537	1209849	1213324	-	Cre16.g650850.t1.2	Cre16.g650850.t1.2		1212777,1212358,1212012,1211341,1211016,1209072	1213537,1212591,1212210,1211828,1211167,1210893	
chr16	1213648	1229259	1213937	1228603	+	Cre16.g650900.t1.1	Cre16.g650900.t1.1		1213648,1214250,1214655,1214916,1215222,1215729,1215954,1218939,1220124,1220471,1220733,1221134,1221578,1221897,1222242,1222824,1224248,1224553,1227753,1228072	1214018,1214347,1214721,1215036,1215541,1215787,1218790,1219855,1220272,1220570,1220828,1221267,1221713,1222129,1222653,1224110,1224352,1227576,1227923,1229259	
chr16	1229261	1231647	1230013	1231600	-	Cre16.g650950.t1.1	Cre16.g650950.t1.1		1231590,1231328,1231109,1230837,1230571,1229261	1231647,1231397,1231175,1230945,1230644,1230340	
chr16	1231701	1237827	1232652	1237633	-	RFA3	Cre16.g651000.t1.2		1237549,1237104,1236635,1236265,1235971,1235657,1235437,1234986,1234668,1234288,1233927,1233692,1233352,1232952,1231701	1237827,1237456,1236766,1236406,1236066,1235721,1235512,1235122,1234758,1234427,1234092,1233772,1233489,1233103,1232743	Homologous to eukaryotic RPA 7 kDa subunit; RP-A; RF-A; Replication factor-A protein 1; Single-stranded DNA-binding protein; Chlamydomonas has at least two homologues of RPA7.  Previously annotated as RPA7B
chr16	1238558	1240109	1238673	1239643	+	CYC6	Cre16.g651050.t1.2		1238558,1239026,1239526	1238890,1239138,1240109	cytochrome c6, chloroplast precursor (Cyt c553) (Cyt c552) (PETJ) [PMID: 3036842; PMID: 1714451]
chr16	1240178	1246814	1240456	1246031	+	Cre16.g651100.t1.1	Cre16.g651100.t1.1		1240178,1241918,1242339,1242598,1243347,1243746,1244035,1244386,1244667,1244955	1241686,1242187,1242401,1243227,1243525,1243911,1244183,1244528,1244750,1246814	
chr16	1246898	1254892	1247152	1253449	+	Cre16.g651150.t1.1	Cre16.g651150.t1.1		1246898,1248734,1249276,1249626,1250645,1251092,1251574,1251931,1252278,1252601	1248535,1249102,1249344,1250381,1250865,1251311,1251722,1252055,1252346,1254892	
chr16	1246898	1254892	1247152	1253449	+	Cre16.g651150.t2.1	Cre16.g651150.t2.1		1246898,1248734,1249276,1249626,1250645,1251092,1251574,1251931,1252278,1252601	1248535,1249102,1249344,1250381,1250865,1251293,1251722,1252055,1252361,1254892	
chr16	1246898	1254892	1247152	1253449	+	Cre16.g651150.t3.1	Cre16.g651150.t3.1		1246898,1248734,1249276,1249626,1250645,1251092,1251574,1251931,1252278,1252601	1248535,1249102,1249344,1250381,1250865,1251293,1251722,1252055,1252346,1254892	
chr16	1254948	1258689	1255599	1258200	+	Cre16.g651200.t1.2	Cre16.g651200.t1.2		1254948,1255916,1256198,1256618,1256988,1257417,1257891	1255792,1255993,1256472,1256717,1257159,1257666,1258689	
chr16	1259498	1261559	1259580	1261071	+	Cre16.g651250.t1.2	Cre16.g651250.t1.2		1259498,1260231,1260415,1260875	1259946,1260305,1260560,1261559	
chr16	1261668	1263690	1262103	1262708	+	Cre16.g651300.t1.2	Cre16.g651300.t1.2		1261668,1261877,1262235	1261684,1262122,1263690	
chr16	1264422	1273527	1266152	1273312	-	ATG17	Cre16.g651350.t1.1		1273235,1272879,1272310,1271900,1271597,1271000,1270529,1270121,1269907,1269569,1269211,1268620,1264422	1273527,1273002,1272424,1272036,1271727,1271408,1270612,1270290,1269970,1269735,1269361,1269055,1268419	Scaffold protein responsible for phagophore assembly site organization; regulatory subunit of an autophagy-specific complex that includes Atg1p and Atg13p; stimulates Atg1p kinase activity; human ortholog RB1CC1/FIP200 interacts with p53, which inhibits autophagy in human cells
chr16	1274008	1286859	1274175	1285667	+	Cre16.g651400.t1.2	Cre16.g651400.t1.2		1274008,1274389,1274606,1274975,1275315,1275854,1276316,1276809,1277024,1278055,1278558,1278992,1279293,1279564,1279941,1280557,1281003,1281838,1282121,1282548,1282972	1274308,1274523,1274754,1275135,1275649,1276092,1276595,1276853,1277919,1278316,1278772,1279099,1279380,1279766,1280360,1280837,1281611,1281929,1282300,1282728,1286859	
chr16	1274008	1286859	1274175	1285667	+	Cre16.g651400.t2.1	Cre16.g651400.t2.1		1274008,1274389,1274606,1274975,1275315,1275854,1276316,1277024,1278055,1278558,1278992,1279293,1279564,1279941,1280557,1281003,1281838,1282121,1282548,1282972	1274308,1274523,1274754,1275135,1275649,1276092,1276595,1277919,1278316,1278772,1279099,1279380,1279766,1280360,1280837,1281611,1281929,1282300,1282728,1286859	
chr16	1287058	1300179	1287444	1299476	+	Cre16.g651450.t1.1	Cre16.g651450.t1.1		1287058,1287830,1288289,1288869,1290930,1294061,1294526,1294875,1295252,1295592,1296081,1296384,1296921,1297410,1297732	1287609,1288137,1288679,1290765,1293913,1294399,1294744,1295048,1295469,1295964,1296280,1296652,1297279,1297516,1300179	
chr16	1300751	1304507	1301317	1304258	-	Cre16.g651500.t1.2	Cre16.g651500.t1.2		1304111,1303840,1303458,1303060,1302549,1302101,1301645,1300751	1304507,1303915,1303546,1303197,1302619,1302233,1301829,1301330	
chr16	1304612	1307343	1304735	1306594	+	MTT1	Cre16.g651550.t1.2		1304612,1304970,1305192,1305363,1305989,1306474	1304836,1305127,1305277,1305501,1306089,1307343	some similarity to mitochondrial transcription termination factor mTERF; probably mitochondrial (TargetP score 0.813)
chr16	1307372	1313987	1309176	1313574	-	Cre16.g651600.t1.1	Cre16.g651600.t1.1		1313879,1311598,1310756,1310198,1309893,1309670,1307372	1313987,1313678,1311374,1310625,1310088,1309753,1309320	
chr16	1314108	1316939	1314297	1316211	+	TSI2	Cre16.g651650.t1.1		1314108,1314794,1315049,1315620,1316091	1314501,1314899,1315231,1315720,1316939	
chr16	1316972	1324097	1319136	1323704	-	Cre16.g651700.t1.1	Cre16.g651700.t1.1		1323999,1321491,1320658,1320136,1319711,1319470,1316972	1324097,1323805,1321264,1320533,1319915,1319553,1319274	
chr16	1324258	1336081	1324458	1335701	+	TSI	Cre16.g651750.t1.2		1324258,1324949,1325267,1325876,1326313,1326575,1327113,1327553,1327964,1328392,1328997,1329393,1329769,1330880,1331660,1332150,1332439,1332805,1333214,1333787,1334173,1334545,1334969,1335323	1324662,1325054,1325342,1326029,1326402,1326694,1327211,1327744,1328094,1328581,1329185,1329588,1329920,1330958,1331748,1332235,1332595,1332959,1333401,1333890,1334313,1334687,1335083,1336081	
chr16	1336128	1342489	1336474	1341780	+	Cre16.g651801.t1.1	Cre16.g651801.t1.1		1336128,1336435,1339113,1339945,1340621,1341152,1341633	1336193,1338843,1339764,1340399,1340852,1341235,1342489	
chr16	1342492	1355757	1343120	1354962	-	Cre16.g651850.t1.1	Cre16.g651850.t1.1		1355223,1354794,1354347,1353805,1351722,1349593,1348612,1348181,1347837,1347491,1347178,1346683,1346314,1345916,1345271,1345033,1342492	1355757,1355037,1354651,1354195,1353612,1351617,1349534,1348519,1348055,1347664,1347392,1347055,1346513,1346184,1345629,1345139,1344825	
chr16	1356832	1363693	1357069	1363478	+	CRI1	Cre16.g651900.t1.1		1356832,1357812,1358149,1358468,1358866,1359363,1359772,1360051,1360363,1360567,1361039,1361414,1361792,1362398,1362679	1357504,1358002,1358280,1358677,1359101,1359490,1359862,1360160,1360428,1360788,1361224,1361599,1362255,1362508,1363693	carotenoid isomerase (carotene isomerase), putative chloroplast precursor; (crtH) (CIS)
chr16	1363742	1370186	1363767	1369622	+	Cre16.g651923.t1.2	Cre16.g651923.t1.2		1363742,1363906,1364033,1364528,1364855,1365193,1365828,1366179,1366704,1367132,1367595,1367981,1368419,1368763,1369061,1369487	1363826,1363960,1364271,1364613,1364937,1365231,1365949,1366317,1366872,1367255,1367687,1368106,1368524,1368873,1369219,1370186	
chr16	1370242	1376513	1370357	1375542	+	Cre16.g651950.t1.2	Cre16.g651950.t1.2		1370242,1370669,1371138,1371621,1371986,1372356,1372678,1373214,1373480,1373836,1374363,1374833,1375542	1370457,1370806,1371361,1371776,1372181,1372481,1373001,1373350,1373674,1374040,1374537,1375470,1376513	
chr16	1377012	1380376	1377291	1379390	+	Cre16.g652000.t1.1	Cre16.g652000.t1.1		1377012,1377820,1377997,1378363,1378681,1378822,1379206	1377414,1377865,1378076,1378624,1378691,1378910,1380376	
chr16	1380396	1384751	1380600	1384729	-	ZXE3	Cre16.g652050.t1.2		1384522,1384162,1383579,1383206,1382836,1382511,1381905,1381599,1381314,1381017,1380396	1384751,1384307,1383693,1383351,1382901,1382734,1382043,1381680,1381392,1381144,1380711	
chr16	1384852	1390044	1384919	1388430	+	MAP2	Cre16.g652100.t1.2		1384852,1386239,1386691,1387278,1387756,1388308	1385933,1386364,1386774,1387399,1387820,1390044	Involved in N-terminal maturation of proteins; Cleaves N-terminal methionine; belongs to the MAP2-type of methionine aminopeptidase, found in archae and eukaryotes, characterized by a poly-lysine stretch in N-terminal domain; probably cytosolic (PMID: 11060042)
chr16	1390102	1400461	1390131	1399315	+	FBP4	Cre16.g652150.t1.2		1390102,1390235,1390518,1390773,1391124,1391509,1391812,1392235,1392508,1392929,1393450,1393844,1394189,1394504,1394781,1395100,1395771,1396325,1397127,1398008,1399075	1390137,1390418,1390577,1390848,1391168,1391611,1391881,1392296,1392570,1392997,1393544,1393922,1394240,1394579,1394847,1395392,1395921,1396421,1397704,1398688,1400461	
chr16	1401332	1408423	1401599	1406823	+	MMP9	Cre16.g652200.t1.2		1401332,1401737,1401920,1402175,1402527,1402899,1403351,1403793,1404221,1404568,1405069,1405550,1406017,1406611	1401648,1401775,1401953,1402310,1402622,1403044,1403419,1403973,1404391,1404679,1405205,1405776,1406429,1408423	belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoproteins (cell wall glycoproteins) with a hydroxyproline-rich (HR) domain [PMID: 12034745]
chr16	1408436	1409061	1408790	1408956	-	Cre16.g652226.t1.1	Cre16.g652226.t1.1		1408436	1409061	
chr16	1410172	1414835	1410367	1413841	+	CMA3	Cre16.g652250.t1.2		1410172,1410521,1410751,1411087,1412528,1412863,1413540	1410436,1410555,1410824,1411190,1412583,1412958,1414835	Transmembrane protein with proline-rich C-terminal domain; secretory pathway; highly similar to neigboring CMA1 and 2
chr16	1415122	1420243	1415170	1419070	+	CMA2	Cre16.g652300.t1.1		1415122,1415324,1415585,1416783,1417211,1417333,1417598,1417890,1418793	1415239,1415358,1415658,1417070,1417278,1417374,1417653,1417985,1420243	Transmembrane protein with proline-rich C-terminal domain; secretory pathway; highly similar to neigboring CMA1 and 3
chr16	1420492	1424323	1420552	1423057	+	FAP183	Cre16.g652350.t1.2		1420492,1420746,1421035,1421437,1421981,1422364,1422666	1420645,1420780,1421108,1421540,1422036,1422459,1424323	Transmembrane protein with proline-rich C-terminal domain; secretory pathway; highly similar to neigboring CMA2 and 3; described as a Flagellar Associated Protein, found in the flagellar proteome; FAP243 is likely a part of FAP183.
chr16	1424372	1443123	1424515	1442469	+	FAP183	Cre16.g652400.t1.2		1424372,1425026,1425690,1426099,1426494,1427134,1427550,1427825,1428137,1429097,1429511,1429833,1430231,1430509,1430781,1431060,1431528,1431842,1432366,1432921,1433156,1434577,1435342,1435923,1436329,1436946,1437506,1437969,1438424,1438808,1439237,1439647,1440166,1440579,1440981	1424623,1425085,1425765,1426229,1426709,1427249,1427670,1427926,1428870,1429253,1429624,1429954,1430360,1430593,1430839,1431299,1431641,1432063,1432547,1433014,1434359,1434761,1435665,1436099,1436690,1437084,1437633,1438194,1438567,1439053,1439428,1439847,1440378,1440758,1443123	
chr16	1443172	1445782	1443282	1445084	+	Cre16.g652450.t1.1	Cre16.g652450.t1.1		1443172,1443367,1443660,1444470,1444915	1443286,1443414,1443814,1444702,1445782	
chr16	1445902	1449743	1446098	1448070	+	Cre16.g652483.t1.1	Cre16.g652483.t1.1		1445902,1446855	1446611,1449743	
chr16	1445902	1449743	1446098	1448070	+	Cre16.g652483.t2.1	Cre16.g652483.t2.1		1445902,1446861	1446611,1449743	
chr16	1450836	1452301	1451663	1452177	-	PRPL24	Cre16.g652550.t1.2		1450836	1452301	imported to chloroplast; Chloroplast large ribosomal subunit protein L24
chr16	1452402	1455743	1452816	1455338	+	Cre16.g652600.t1.1	Cre16.g652600.t1.1		1452402,1453014,1453494,1454070,1454279,1454678,1455137	1452890,1453151,1453711,1454179,1454413,1454749,1455743	
chr16	1452402	1455743	1452816	1455338	+	Cre16.g652600.t2.1	Cre16.g652600.t2.1		1452402,1452791,1453014,1453494,1454070,1454279,1454678,1455137	1452694,1452890,1453151,1453711,1454179,1454413,1454749,1455743	
chr16	1455762	1460971	1457054	1460678	-	Cre16.g652650.t1.1	Cre16.g652650.t1.1		1460657,1460495,1459660,1459311,1458847,1458531,1458008,1457649,1455762	1460971,1460575,1459938,1459409,1458921,1458677,1458196,1457780,1457171	
chr16	1461422	1467363	1461872	1466395	+	Cre16.g652700.t1.1	Cre16.g652700.t1.1		1461422,1463173,1463830,1464106,1464504,1464960,1465334,1466251	1462852,1463601,1463914,1464261,1464623,1465037,1465939,1467363	
chr16	1467412	1477822	1467640	1476181	+	FMO10	Cre16.g652750.t1.2		1467412,1467837,1468004,1468265,1468535,1469983,1470319,1470700,1471021,1471310,1471634,1472015,1472384,1473691	1467751,1467883,1468029,1468362,1469731,1470153,1470477,1470859,1471094,1471363,1471759,1472164,1473496,1477822	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification
chr16	1477826	1480191	1477942	1480112	-	Cre16.g652800.t1.2	Cre16.g652800.t1.2		1479815,1479494,1479017,1478185,1477826	1480191,1479704,1479224,1478260,1478014	
chr16	1480238	1484151	1480679	1484019	-	GTR4	Cre16.g652850.t1.2		1483989,1483810,1483486,1483097,1482780,1482440,1481954,1481474,1480961,1480238	1484151,1483923,1483592,1483186,1482819,1482605,1482156,1481587,1481047,1480748	
chr16	1484292	1487780	1484409	1487422	+	Cre16.g652900.t1.1	Cre16.g652900.t1.1		1484292,1484536,1485112,1485462,1485816,1486285,1486763,1487233	1484440,1484633,1485174,1485518,1485893,1486452,1487041,1487780	
chr16	1487862	1496455	1488050	1495873	+	Cre16.g652950.t1.2	Cre16.g652950.t1.2		1487862,1488438,1488826,1489321,1489699,1490197,1490675,1491265,1491831,1492249,1492717,1493071,1493605,1494020,1494448,1494838,1495168,1495506	1488308,1488587,1488981,1489504,1489838,1490311,1490987,1491415,1491912,1492446,1492863,1493254,1493746,1494229,1494559,1494914,1495319,1496455	
chr16	1496982	1502353	1497162	1501813	+	Cre16.g653000.t1.1	Cre16.g653000.t1.1		1496982,1497330,1497655,1498165,1498482,1498863,1499122,1499572,1500026,1500316	1497210,1497485,1497765,1498287,1498662,1498927,1499347,1499712,1500081,1502353	
chr16	1502596	1505751	1503261	1505390	-	Cre16.g653050.t1.1	Cre16.g653050.t1.1		1505559,1505357,1504982,1504538,1504330,1503741,1502596	1505751,1505449,1505130,1504748,1504380,1504135,1503499	
chr16	1505852	1512083	1505955	1511300	+	Cre16.g653100.t1.1	Cre16.g653100.t1.1		1505852,1506165,1506357,1506633,1507392,1508369,1509100,1509505,1509863	1506042,1506206,1506440,1507217,1508142,1508826,1509388,1509647,1512083	
chr16	1512139	1515473	1512295	1514629	+	CPR3	Cre16.g653150.t1.2		1512139,1512851,1513269,1513525,1513755,1514108,1514452	1512427,1513042,1513359,1513571,1513855,1514261,1515473	the U2f snRNA, not a protein gene, is in the vicinity
chr16	1512139	1515473	1512400	1514629	+	CPR3	Cre16.g653150.t2.1		1512139,1512851,1513269,1513525,1513755,1514108,1514452	1512427,1513042,1513359,1513571,1513855,1514261,1515473	the U2f snRNA, not a protein gene, is in the vicinity
chr16	1515501	1521121	1515856	1521019	-	Cre16.g653200.t1.1	Cre16.g653200.t1.1		1520932,1520602,1520264,1519654,1519360,1518675,1518501,1518244,1516608,1516287,1515501	1521121,1520757,1520463,1519924,1519410,1519145,1518552,1518317,1518044,1516379,1516051	
chr16	1521392	1522613	1521736	1522567	+	Cre16.g653250.t1.1	Cre16.g653250.t1.1		1521392,1521991	1521841,1522613	
chr16	1522662	1524633	1522758	1523497	+	Cre16.g653258.t1.2	Cre16.g653258.t1.2		1522662	1524633	
chr16	1524635	1531081	1525843	1530778	-	Cre16.g653300.t1.2	Cre16.g653300.t1.2		1529716,1529367,1528923,1528457,1527929,1527659,1527383,1527016,1526568,1524635	1531081,1529474,1529107,1528640,1528051,1527727,1527484,1527135,1526691,1526370	Putative basic-leucine zipper (bZIP) transcription factor
chr16	1531480	1533235	1532059	1532900	-	Cre16.g653338.t1.1	Cre16.g653338.t1.1		1533023,1531480	1533235,1532934	
chr16	1533320	1539376	1533835	1539337	-	Cre16.g653350.t1.2	Cre16.g653350.t1.2		1539040,1538736,1538310,1538021,1537543,1537169,1536885,1536366,1535917,1535406,1535114,1534575,1534172,1533320	1539376,1538808,1538459,1538088,1537611,1537321,1536943,1536588,1536065,1535513,1535196,1534730,1534282,1533966	
chr16	1539516	1547297	1539743	1546309	+	Cre16.g653400.t1.1	Cre16.g653400.t1.1		1539516,1541093,1541431,1544619,1545422,1545937	1540807,1541237,1544451,1545263,1545685,1547297	
chr16	1548136	1551168	1548418	1550603	+	Cre16.g653450.t1.2	Cre16.g653450.t1.2		1548136,1548716,1549144,1549335,1549666,1549981,1550243	1548596,1548936,1549216,1549448,1549781,1550115,1551168	
chr16	1551170	1554975	1552103	1554490	-	Cre16.g653500.t1.1	Cre16.g653500.t1.1		1553974,1552662,1551170	1554975,1553723,1552406	
chr16	1555116	1563737	1555335	1563507	+	Cre16.g653550.t1.2	Cre16.g653550.t1.2		1555116,1555575,1555940,1556347,1556796,1557216,1557487,1557996,1558502,1559002,1559410,1559938,1561252,1562112,1562477,1562840,1563069	1555380,1555695,1556085,1556508,1556930,1557271,1557732,1558111,1558659,1559121,1559666,1560814,1561882,1562237,1562724,1562941,1563737	
chr16	1563740	1565175	1564731	1564912	-	MRPL33	Cre16.g653601.t1.1		1563740	1565175	
chr16	1565636	1568027	1565852	1567517	+	Cre16.g653650.t1.1	Cre16.g653650.t1.1		1565636,1566175,1566443,1566795,1567143,1567453	1566007,1566275,1566507,1566935,1567231,1568027	
chr16	1946	5999	2068	5772	+	Cre16.g653651.t1.1	Cre16.g653651.t1.1		1946,3383,3689,4299	3262,3520,4117,5999	
chr16	1568056	1578825	1569103	1577770	-	Cre16.g653700.t1.1	Cre16.g653700.t1.1		1578681,1578511,1577998,1577006,1576624,1576193,1575788,1575207,1574845,1574450,1574010,1573736,1573262,1572651,1572351,1571929,1571551,1571245,1570823,1570556,1570127,1569812,1569486,1568056	1578825,1578591,1578154,1577836,1576786,1576433,1575961,1575533,1574965,1574670,1574080,1573822,1573393,1572949,1572410,1572060,1571612,1571368,1570917,1570650,1570278,1569932,1569575,1569229	
chr16	1578880	1581425	1579411	1581169	-	Cre16.g653750.t1.2	Cre16.g653750.t1.2		1581063,1580810,1580595,1580386,1580092,1579907,1579611,1578880	1581425,1580984,1580634,1580445,1580200,1579952,1579680,1579432	
chr16	1581806	1589937	1582007	1589068	+	OPR101	Cre16.g653800.t1.1		1581806,1582169,1582391,1588005,1588380	1582081,1582232,1587808,1588159,1589937	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr16	1590054	1592665	1591834	1592422	-	Cre16.g653850.t1.1	Cre16.g653850.t1.1		1592320,1592151,1590054	1592665,1592225,1591927	
chr16	1593950	1598257	1595495	1597978	-	Cre16.g653900.t1.1	Cre16.g653900.t1.1		1597903,1597613,1597294,1596938,1593950	1598257,1597736,1597387,1597128,1596691	
chr16	1599166	1608307	1599778	1608024	+	Cre16.g653934.t1.1	Cre16.g653934.t1.1		1599166,1600244,1600714,1601069,1601532,1602027,1602381,1602598,1603021,1603314,1603609,1604432,1604701,1605250,1605396,1605600,1605884,1606169,1606453,1606738,1607022,1607302,1607641,1607935	1600154,1600605,1600869,1601426,1601907,1602286,1602425,1602881,1603194,1603482,1604373,1604614,1605185,1605337,1605503,1605788,1606072,1606357,1606641,1606926,1607210,1607487,1607859,1608307	
chr16	1599166	1608307	1599778	1608024	+	Cre16.g653934.t2.1	Cre16.g653934.t2.1		1599166,1600244,1600714,1601069,1601532,1602027,1602381,1602598,1603021,1603314,1603609,1604432,1604701,1605250,1605396,1605600,1605884,1606169,1606453,1606738,1607022,1607302,1607935	1600154,1600605,1600869,1601426,1601907,1602286,1602425,1602881,1603194,1603482,1604373,1604614,1605185,1605337,1605503,1605788,1606072,1606357,1606641,1606926,1607210,1607487,1608307	
chr16	1608318	1610325	1609108	1609946	-	Cre16.g654000.t1.2	Cre16.g654000.t1.2		1608318	1610325	
chr16	1610465	1613343	1610911	1612860	+	Cre16.g654050.t1.1	Cre16.g654050.t1.1		1610465,1610647,1610897,1611226,1611653,1611923,1612204,1612586	1610530,1610706,1611100,1611527,1611798,1612038,1612454,1613343	
chr16	1613440	1617039	1614490	1616498	-	Cre16.g654100.t1.1	Cre16.g654100.t1.1		1616936,1616770,1616177,1615963,1615806,1615432,1615209,1613440	1617039,1616859,1616666,1616064,1615861,1615563,1615321,1615038	
chr16	1613510	1617025	1614490	1616498	-	Cre16.g654100.t2.1	Cre16.g654100.t2.1		1616770,1616177,1615963,1615806,1615432,1615209,1613510	1617025,1616666,1616064,1615861,1615563,1615321,1615038	
chr16	1617186	1621417	1617490	1619932	+	FAP63	Cre16.g654150.t1.1		1617186,1617490,1618479,1618804	1617282,1618339,1618601,1621417	Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG20 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]
chr16	1622116	1626997	1622340	1625655	+	Cre16.g654250.t2.1	Cre16.g654250.t2.1		1622116,1622588,1622851,1623097,1623777,1624041,1624470,1624908,1625307	1622443,1622682,1622991,1623231,1623830,1624100,1624577,1625021,1626997	
chr16	1622116	1626997	1622340	1625655	+	Cre16.g654250.t3.1	Cre16.g654250.t3.1		1622116,1622591,1622851,1623097,1623777,1624041,1624470,1624908,1625307	1622443,1622682,1622991,1623231,1623830,1624100,1624577,1625021,1626997	
chr16	1622076	1626997	1622598	1625655	+	Cre16.g654250.t1.2	Cre16.g654250.t1.2		1622076,1622588,1622851,1623097,1623777,1624041,1624470,1624908,1625307	1622443,1622682,1622991,1623231,1623830,1624100,1624577,1625021,1626997	
chr16	1627000	1629906	1627476	1629783	-	RSP23	Cre16.g654300.t1.2		1629657,1629222,1628908,1627000	1629906,1629412,1629076,1628751	RSP23, a spoke specific nucleotide diphosphate kinase [PMID: 16507594; PMID: 15194815; GI:42412387]
chr16	1630196	1635268	1630967	1634957	+	Cre16.g654350.t1.1	Cre16.g654350.t1.1		1630196,1631105,1631783,1632244,1632643,1632947,1633314,1633682,1634041,1634367,1634818	1631000,1631319,1631910,1632299,1632738,1633048,1633518,1633814,1634110,1634521,1635268	hypothetical protein, similar to splicing factor with U1 zinc finger domain
chr16	1635529	1639413	1636241	1638186	+	Cre16.g654400.t1.1	Cre16.g654400.t1.1		1635529,1636200	1635951,1639413	
chr16	1640176	1647837	1640727	1645549	+	Cre16.g654450.t1.2	Cre16.g654450.t1.2		1640176,1641841,1642196,1643629,1643905,1644229,1644641,1645036	1641447,1641882,1643377,1643676,1643970,1644386,1644734,1647837	
chr16	1647861	1651335	1648680	1651223	-	EIF3F	Cre16.g654500.t1.1		1650942,1650798,1650549,1650092,1649746,1649199,1647861	1651335,1650873,1650702,1650186,1649808,1649312,1648773	Putative Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
chr16	1651586	1652307	1651654	1651859	+	Cre16.g654526.t1.1	Cre16.g654526.t1.1		1651586	1652307	
chr16	1652356	1662557	1652804	1661262	+	Cre16.g654550.t1.2	Cre16.g654550.t1.2		1652356,1654009,1654454,1655057,1655901,1656275,1656701,1658016,1658358,1658889	1652828,1654164,1654847,1655685,1656051,1656525,1657825,1658149,1658547,1662557	
chr16	1662676	1678650	1663354	1677871	+	PHC56	Cre16.g654600.t1.1		1662676,1664224,1664873,1665327,1665897,1666360,1666791,1668274,1668702,1669024,1673936,1676476,1676978,1677265	1663406,1664419,1664957,1665462,1666027,1666442,1667339,1668375,1668828,1673802,1676269,1676739,1677100,1678650	
chr16	1679930	1691825	1680631	1691223	-	PHC61	Cre16.g654700.t1.1		1691634,1691186,1690819,1690410,1690034,1689765,1689061,1681962,1681566,1679930	1691825,1691290,1690948,1690494,1690166,1689910,1689611,1688943,1681802,1681342	
chr16	1693537	1694908	1693716	1694473	+	Cre16.g654750.t1.2	Cre16.g654750.t1.2		1693537	1694908	
chr16	1694957	1717258	1695175	1717015	+	Cre16.g654800.t1.1	Cre16.g654800.t1.1		1694957,1695386,1695735,1696217,1696436,1697362,1697634,1697932,1698352,1698743,1699333,1700043,1700772,1701097,1701592,1702031,1702407,1702587,1703073,1703471,1703862,1704291,1704623,1704880,1705318,1705530,1706171,1706563,1706953,1707428,1708136,1708505,1708901,1709284,1709607,1710112,1710636,1711327,1711702,1711966,1712175,1712645,1713033,1713326,1713635,1713909,1714298,1714657,1715373,1715688,1716053,1716370	1695194,1695564,1696027,1696288,1697020,1697449,1697744,1698121,1698434,1698970,1699869,1700460,1700885,1701359,1701675,1702183,1702460,1702828,1703197,1703535,1703990,1704431,1704713,1704956,1705407,1705981,1706270,1706730,1707129,1707888,1708244,1708708,1709037,1709353,1709759,1710498,1711076,1711590,1711806,1712030,1712372,1712748,1713115,1713421,1713787,1714067,1714495,1715103,1715481,1715821,1716181,1717258	
chr16	1717261	1725821	1718773	1725726	-	Cre16.g654850.t1.1	Cre16.g654850.t1.1		1725620,1725126,1724937,1724619,1724369,1724073,1723753,1723354,1722404,1722099,1721858,1721466,1721142,1720994,1720756,1720448,1720164,1719982,1719723,1719222,1717261	1725821,1725217,1725035,1724775,1724400,1724261,1723874,1723493,1723177,1722192,1721903,1721688,1721327,1721036,1720815,1720502,1720175,1720033,1719778,1719334,1718870	
chr16	1725871	1734626	1727628	1734417	-	Cre16.g654900.t1.1	Cre16.g654900.t1.1		1734332,1733326,1733073,1732625,1732435,1732077,1731773,1731371,1731064,1730495,1730085,1729772,1729633,1729387,1729166,1729004,1728779,1728610,1728400,1727978,1725871	1734626,1733516,1733147,1732706,1732466,1732272,1731908,1731570,1731235,1730942,1730289,1729957,1729675,1729446,1729220,1729015,1728830,1728665,1728417,1728078,1727719	
chr16	1735651	1760306	1736942	1759991	-	SRR3	Cre16.g654950.t1.1		1759879,1759106,1758689,1757691,1756367,1755954,1755121,1754644,1754053,1753720,1753154,1752576,1751976,1751060,1750636,1750329,1749761,1748769,1747753,1746354,1745920,1745642,1745263,1745002,1744489,1743850,1743405,1742708,1742483,1742136,1741851,1739912,1739543,1739368,1738975,1738695,1738336,1738113,1735651	1760306,1759648,1758942,1758530,1757485,1756063,1755481,1754755,1754407,1753759,1753426,1752926,1752426,1751701,1750876,1750393,1750131,1749568,1748575,1747613,1746113,1745732,1745457,1745043,1744773,1744213,1743514,1743127,1742542,1742234,1741915,1741505,1739611,1739412,1739144,1738794,1738437,1738190,1737842	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr16	1760401	1764626	1760694	1764528	-	Cre16.g654992.t1.1	Cre16.g654992.t1.1		1764240,1763564,1763132,1762833,1762396,1760401	1764626,1764019,1763279,1762873,1762521,1762167	
chr16	1764767	1770765	1765316	1768242	+	PWR11	Cre16.g655000.t1.1		1764767,1765302,1766214,1766873	1765046,1765820,1766563,1770765	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr16	1770781	1776646	1772637	1776418	-	Cre16.g655050.t1.2	Cre16.g655050.t1.2		1776388,1776206,1775593,1775294,1774897,1774374,1773775,1770781	1776646,1776246,1775686,1775374,1774971,1774460,1774065,1773489	
chr16	1776767	1779778	1777002	1779470	+	Cre16.g655100.t1.1	Cre16.g655100.t1.1		1776767,1777457,1777771,1778104,1778445,1778855,1779341	1777081,1777560,1777834,1778224,1778511,1779184,1779778	
chr16	1779827	1782986	1780055	1782384	+	Cre16.g655150.t1.2	Cre16.g655150.t1.2		1779827,1780523,1781213,1781605,1781963,1782267	1780077,1780677,1781322,1781701,1782040,1782986	
chr16	1786367	1792990	1787048	1792210	+	PTB6	Cre16.g655200.t1.2		1786367,1787022,1787437,1787586,1787780,1788024,1788357,1788532,1788837,1789128,1789312,1789684,1790073,1790358,1790636,1790971,1791340,1791689,1792023	1786908,1787051,1787488,1787650,1787855,1788164,1788382,1788643,1788956,1789214,1789381,1789846,1790162,1790449,1790765,1791141,1791459,1791822,1792990	Putative phosphate transporter homolog type B6, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters
chr16	1787317	1792990	1787472	1792210	+	PTB6	Cre16.g655200.t2.1		1787317,1787586,1787780,1788024,1788357,1788532,1788837,1789128,1789312,1789684,1790073,1790358,1790636,1790971,1791340,1791689,1792023	1787488,1787650,1787855,1788164,1788382,1788643,1788956,1789214,1789381,1789846,1790162,1790449,1790765,1791141,1791459,1791822,1792990	Putative phosphate transporter homolog type B6, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters
chr16	1793011	1795736	1793213	1795605	-	Cre16.g655250.t1.2	Cre16.g655250.t1.2		1794642,1794038,1793592,1793011	1795736,1794307,1793719,1793394	
chr16	1797317	1799336	1797587	1799290	+	Cre16.g655283.t1.1	Cre16.g655283.t1.1		1797317,1798059,1799270	1797653,1799052,1799336	
chr16	1799757	1803630	1800038	1801798	+	Cre16.g655316.t1.1	Cre16.g655316.t1.1		1799757,1800511	1800104,1803630	
chr16	1803677	1814090	1810508	1812259	+	Cre16.g655350.t1.1	Cre16.g655350.t1.1		1803677,1810421,1810981	1803934,1810574,1814090	
chr16	1814341	1823236	1815370	1823151	-	Cre16.g655400.t1.1	Cre16.g655400.t1.1		1822939,1822772,1822530,1822336,1821695,1820257,1819915,1819531,1818882,1818583,1817920,1816501,1816157,1815815,1814341	1823236,1822856,1822638,1822403,1822078,1821477,1820048,1819621,1819224,1818746,1818365,1817727,1816205,1815903,1815596	
chr16	1825377	1827892	1825418	1827314	+	Cre16.g655430.t1.2	Cre16.g655430.t1.2		1825377,1826045	1825817,1827892	
chr16	1830814	1843136	1831499	1843054	-	Cre16.g655450.t1.1	Cre16.g655450.t1.1		1842847,1842619,1842008,1841790,1841374,1841077,1840809,1840471,1840023,1839736,1839398,1839183,1838862,1838432,1838106,1837827,1837528,1836929,1836322,1835960,1835583,1835192,1834849,1834559,1834229,1833924,1833597,1833213,1832935,1832551,1832188,1831873,1830814	1843136,1842749,1842294,1841839,1841559,1841142,1840922,1840620,1840120,1839835,1839514,1839217,1839020,1838617,1838223,1837950,1837604,1837066,1836640,1836108,1835711,1835312,1834942,1834690,1834342,1834050,1833697,1833417,1832985,1832738,1832244,1831965,1831605	
chr16	1830814	1843136	1831499	1843054	-	Cre16.g655450.t2.1	Cre16.g655450.t2.1		1842847,1842619,1842008,1841790,1841374,1841077,1840809,1840471,1840023,1839736,1839398,1839183,1838862,1838432,1838106,1837827,1837528,1836322,1835960,1835583,1835192,1834849,1834559,1834229,1833924,1833597,1833213,1832935,1832551,1832188,1831873,1830814	1843136,1842749,1842294,1841839,1841559,1841142,1840922,1840620,1840120,1839835,1839514,1839217,1839020,1838617,1838223,1837950,1837604,1836640,1836108,1835711,1835312,1834942,1834690,1834342,1834050,1833697,1833417,1832985,1832738,1832244,1831965,1831605	
chr16	1845501	1852956	1848225	1852466	-	Cre16.g655500.t1.1	Cre16.g655500.t1.1		1852620,1852422,1852131,1851480,1845501	1852956,1852505,1852271,1851986,1851325	
chr16	1853007	1857326	1853333	1857130	-	Cre16.g655515.t1.2	Cre16.g655515.t1.2		1857105,1856901,1856683,1856396,1856012,1855415,1853007	1857326,1857034,1856774,1856489,1856245,1855600,1855259	
chr16	1857697	1865790	1858161	1865319	+	Cre16.g655550.t1.1	Cre16.g655550.t1.1		1857697,1858147,1859402,1859754,1860139,1860333	1858046,1858992,1859446,1859819,1860192,1865790	
chr16	1866007	1871808	1866121	1870377	+	Cre16.g655600.t1.2	Cre16.g655600.t1.2		1866007,1866527,1866854,1867468,1867801,1868111,1868511,1868865,1869382,1870134	1866275,1866582,1867210,1867550,1867888,1868191,1868694,1869022,1869447,1871808	
chr16	1871857	1875108	1871888	1874697	+	Cre16.g655650.t1.1	Cre16.g655650.t1.1		1871857,1872078,1872312,1872598,1873000,1873782,1874166,1874508	1871940,1872178,1872371,1872709,1873596,1873854,1874292,1875108	
chr16	1875129	1883423	1875868	1883206	-	Cre16.g655700.t1.1	Cre16.g655700.t1.1		1882142,1881063,1880585,1880166,1879900,1879634,1879172,1878755,1878360,1878193,1877807,1877363,1877127,1875129	1883423,1881977,1880888,1880295,1879955,1879720,1879257,1878917,1878480,1878227,1877956,1877611,1877231,1876894	
chr16	1883554	1887856	1883796	1886702	+	TEK1	Cre16.g655750.t1.2		1883554,1883908,1884321,1884590,1884869,1885177,1886088,1886546	1883838,1883982,1884398,1884676,1884997,1885896,1886249,1887856	flagellar protein associated with inner arm dynein.  Phosphorylation characterized by Boesger et al. (29) [PMID: 19429781]
chr16	1887858	1892773	1888307	1892711	-	Cre16.g655800.t1.1	Cre16.g655800.t1.1		1892251,1891935,1891588,1891266,1891070,1890832,1890312,1890035,1889700,1887858	1892773,1892041,1891701,1891337,1891149,1890925,1890632,1890087,1889823,1889291	
chr16	1893154	1897285	1893476	1896811	+	Cre16.g655850.t1.1	Cre16.g655850.t1.1		1893154,1893757,1894196,1894449,1894720,1895064,1895449,1895785	1893505,1893919,1894316,1894483,1894869,1895309,1895553,1897285	
chr16	1897288	1900063	1897824	1899785	-	Cre16.g655900.t1.2	Cre16.g655900.t1.2		1899973,1899608,1899310,1898920,1898423,1897288	1900063,1899807,1899445,1899092,1898743,1898157	
chr16	1900174	1912164	1900275	1910947	+	Cre16.g655950.t1.1	Cre16.g655950.t1.1		1900174,1900385,1900774,1901006,1901898,1903284,1903604,1903856,1904196,1904701,1905083,1905591,1905807,1906161,1906806,1907164,1907558,1907840,1908169,1908498,1908788,1908995,1909387,1909938,1910214,1910602	1900304,1900610,1900886,1901051,1902038,1903403,1903672,1904047,1904372,1904895,1905373,1905638,1906000,1906587,1906952,1907370,1907666,1908024,1908326,1908663,1908851,1909185,1909776,1910044,1910418,1912164	TRP-like ion channel protein, homology to TRPL Channel.
chr16	1900174	1912164	1900275	1910947	+	Cre16.g655950.t2.1	Cre16.g655950.t2.1		1900174,1900385,1900774,1901599,1901898,1903284,1903604,1903856,1904196,1904701,1905083,1905591,1905807,1906161,1906806,1907164,1907558,1907840,1908169,1908498,1908788,1908995,1909387,1909938,1910214,1910602	1900304,1900610,1900886,1901644,1902038,1903403,1903672,1904047,1904372,1904895,1905373,1905638,1906000,1906587,1906952,1907370,1907666,1908024,1908326,1908663,1908851,1909185,1909776,1910044,1910418,1912164	TRP-like ion channel protein, homology to TRPL Channel.
chr16	1901264	1912164	1901945	1910947	+	Cre16.g655950.t4.1	Cre16.g655950.t4.1		1901264,1901599,1901898,1903284,1903604,1903856,1904196,1904701,1905083,1905591,1905807,1906161,1906806,1907164,1907558,1907840,1908169,1908498,1908788,1908995,1909387,1909938,1910214,1910602	1901479,1901644,1902038,1903403,1903672,1904047,1904372,1904895,1905373,1905638,1906000,1906587,1906952,1907370,1907666,1908024,1908326,1908663,1908851,1909185,1909776,1910044,1910418,1912164	TRP-like ion channel protein, homology to TRPL Channel.
chr16	1900174	1901166	1900275	1900981	+	Cre16.g655950.t3.1	Cre16.g655950.t3.1		1900174,1900385,1900774	1900304,1900610,1901166	TRP-like ion channel protein, homology to TRPL Channel.
chr16	1914878	1917493	1915565	1917461	-	Cre16.g656000.t1.2	Cre16.g656000.t1.2		1917350,1917093,1914878	1917493,1917182,1917011	
chr16	1917594	1922035	1917679	1921109	+	Cre16.g656050.t1.2	Cre16.g656050.t1.2		1917594,1917833,1918177,1918451,1918802,1919239,1919750,1920674	1917744,1918067,1918251,1918672,1918982,1919537,1919941,1922035	
chr16	1922038	1924413	1922061	1924265	-	Cre16.g656100.t1.1	Cre16.g656100.t1.1		1924208,1924060,1923762,1923361,1922988,1922038	1924413,1924122,1923959,1923558,1923050,1922805	
chr16	1924501	1928923	1925182	1928481	-	Cre16.g656150.t1.2	Cre16.g656150.t1.2		1928363,1927792,1927555,1926464,1926166,1925753,1925549,1924501	1928923,1928116,1927644,1927355,1926231,1925965,1925616,1925447	
chr16	1929214	1937065	1929411	1936210	+	Cre16.g656200.t1.2	Cre16.g656200.t1.2		1929214,1929674,1929997,1930280,1930642,1931155,1931538,1931990,1932290,1932700,1935076,1935733,1936144	1929534,1929807,1930046,1930475,1930978,1931301,1931780,1932114,1932551,1934906,1935577,1935981,1937065	
chr16	1937083	1940692	1938414	1940573	-	SMP12	Cre16.g656250.t1.1		1940232,1940120,1939878,1939580,1939273,1938963,1937083	1940692,1940153,1939940,1939703,1939411,1939082,1938778	putative homolog of Arabidopsis U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K) PMID: 8776903
chr16	1940814	1945127	1941075	1943969	+	DPR1	Cre16.g656300.t1.1		1940814,1941603,1942057,1942544,1942988,1943446,1943864	1941099,1941825,1942190,1942720,1943077,1943640,1945127	Putative dihydropicolinate (DAP) reductase (EC 1.3.1.26); based on homology to Arabidopsis dihydropicolinate reductase (GenBank NP_974464); expected to be plastidic based on homology but no organelle targeting predicted by Target-P; may be missing an N-te
chr16	1945398	1959543	1945994	1959172	-	Cre16.g656350.t1.1	Cre16.g656350.t1.1		1958984,1958505,1958148,1957699,1957325,1956871,1956520,1956204,1955880,1955517,1954448,1953959,1952937,1952279,1952094,1951891,1949772,1946883,1945398	1959543,1958693,1958253,1957788,1957486,1957127,1956652,1956316,1956003,1955672,1954832,1954314,1953812,1952830,1952186,1951967,1951736,1949643,1946729	
chr16	1959598	1965443	1960261	1965320	-	SQD1	Cre16.g656400.t1.2		1965283,1965134,1965022,1964822,1964497,1964115,1963769,1963038,1962495,1962151,1961888,1961480,1960796,1959598	1965443,1965190,1965059,1964954,1964555,1964212,1963841,1963181,1962629,1962246,1961998,1961554,1961008,1960432	PMID: 15029954, Genbank entry AB116936
chr16	1965498	1967873	1965953	1967776	-	CSB59	Cre16.g656433.t1.1		1967764,1967198,1966966,1966182,1965498	1967873,1967323,1967076,1966850,1965953	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr16	1968114	1969837	1968464	1969558	+	Cre16.g656466.t1.1	Cre16.g656466.t1.1		1968114,1969493	1968618,1969837	
chr16	1970174	1980125	1970341	1979369	+	ALA3	Cre16.g656500.t1.1		1970174,1970801,1971341,1971720,1972063,1972305,1972550,1972922,1973397,1973755,1974003,1974330,1974604,1974983,1975328,1975672,1975953,1976323,1976627,1977076,1977289,1977490,1977809,1978083,1978324,1978638,1978937,1979243	1970417,1971060,1971531,1971822,1972156,1972401,1972763,1973023,1973483,1973835,1974205,1974445,1974770,1975108,1975489,1975785,1976042,1976511,1976848,1977156,1977366,1977622,1977918,1978175,1978461,1978742,1979110,1980125	potential phospholipid-transporting P-type ATPase, flippase
chr16	1970174	1980125	1970341	1979369	+	ALA3	Cre16.g656500.t2.1		1970174,1970801,1971341,1971720,1972063,1972305,1972550,1972922,1973397,1973755,1974003,1974330,1974604,1974983,1975328,1975672,1975953,1976323,1976627,1977076,1977289,1977490,1977809,1978083,1978324,1978638,1978937,1979243	1970408,1971060,1971531,1971822,1972156,1972401,1972763,1973023,1973483,1973835,1974205,1974445,1974770,1975108,1975489,1975785,1976042,1976511,1976848,1977156,1977366,1977622,1977918,1978175,1978461,1978742,1979110,1980125	potential phospholipid-transporting P-type ATPase, flippase
chr16	1980128	1981993	1980295	1981920	-	PDI	Cre16.g656551.t1.1		1981706,1981278,1980128	1981993,1981486,1981015	
chr16	1982094	1984524	1982473	1983302	+	TRX19	Cre16.g656600.t1.2		1982094,1982937,1983182	1982615,1983067,1984524	adjacent to another thioredoxin-like gene
chr16	1984586	1988683	1985088	1988653	-	Cre16.g656650.t1.1	Cre16.g656650.t1.1		1988606,1988379,1988265,1987874,1987644,1987139,1986800,1986414,1986126,1985818,1985483,1984586	1988683,1988454,1988271,1987963,1987702,1987264,1986834,1986583,1986169,1985889,1985542,1985244	
chr16	1988794	1994706	1988905	1994322	+	KIN14A-2	Cre16.g656700.t1.2		1988794,1989140,1989771,1990163,1990561,1990951,1991312,1991550,1991845,1992053,1992350,1992592,1992899,1993197,1993526,1993779,1994086	1989001,1989510,1989948,1990318,1990764,1991090,1991399,1991657,1991940,1992226,1992454,1992744,1992976,1993303,1993622,1993896,1994706	kinesin-14 family, kinesin-14A subfamily
chr16	1996285	2002953	1998431	2002657	-	Cre16.g656750.t1.1	Cre16.g656750.t1.1		2002474,2002250,2001587,2001127,2000882,1996285	2002953,2002335,2001772,2001478,2000953,2000696	
chr16	2003980	2009343	2005449	2009204	-	Cre16.g656800.t1.2	Cre16.g656800.t1.2		2009099,2008797,2008317,2008084,2003980	2009343,2008891,2008502,2008148,2007938	
chr16	2010395	2015025	2010770	2014974	-	Cre16.g656851.t1.1	Cre16.g656851.t1.1		2014966,2014763,2014437,2014085,2013684,2013372,2013131,2012763,2012535,2012291,2010395	2015025,2014855,2014607,2014163,2013754,2013446,2013231,2012809,2012600,2012368,2012051	
chr16	2015076	2020275	2015645	2019952	-	Cre16.g656900.t1.2	Cre16.g656900.t1.2		2019862,2019457,2019181,2018785,2018440,2018187,2017928,2017772,2017469,2017064,2016608,2016286,2016032,2015835,2015076	2020275,2019618,2019324,2018978,2018506,2018272,2018018,2017831,2017567,2017219,2016766,2016366,2016097,2015896,2015664	
chr16	2020527	2038345	2021257	2038097	-	Cre16.g656950.t1.1	Cre16.g656950.t1.1		2038021,2037808,2037600,2037479,2037197,2036839,2036669,2036401,2035151,2034939,2034645,2034249,2033871,2033600,2033298,2033015,2022884,2022392,2021795,2020527	2038345,2037934,2037666,2037526,2037364,2036977,2036742,2036499,2036278,2035034,2034812,2034560,2034161,2033698,2033456,2033161,2032529,2022738,2022241,2021605	
chr16	2020527	2038345	2021511	2038097	-	Cre16.g656950.t2.1	Cre16.g656950.t2.1		2038021,2037808,2037600,2037479,2037197,2036839,2036669,2036401,2035151,2034939,2034645,2034249,2033871,2033600,2033298,2033015,2022884,2022392,2021853,2020527	2038345,2037934,2037666,2037526,2037364,2036977,2036742,2036499,2036278,2035034,2034812,2034560,2034161,2033698,2033456,2033161,2032529,2022738,2022241,2021605	
chr16	2038474	2040567	2038669	2039986	+	Cre16.g657000.t1.2	Cre16.g657000.t1.2		2038474,2039015,2039520,2039908	2038875,2039077,2039637,2040567	
chr16	2040672	2042995	2041308	2042726	-	Cre16.g657050.t1.2	Cre16.g657050.t1.2		2042621,2042076,2041683,2040672	2042995,2042292,2041813,2041317	
chr16	2044145	2050825	2045644	2050252	-	Cre16.g657100.t1.1	Cre16.g657100.t1.1		2050552,2050239,2044145	2050825,2050337,2050050	
chr16	2050956	2053457	2050982	2052597	+	Cre16.g657150.t1.1	Cre16.g657150.t1.1		2050956,2051460,2051994,2052333,2052539	2051340,2051731,2052109,2052365,2053457	Related to GCN5
chr16	2053508	2057940	2053898	2057169	+	GOX17	Cre16.g657200.t1.1		2053508,2054098,2054552,2054758,2055070,2055243,2055520,2055876,2056402,2056695,2056998	2053966,2054236,2054651,2054918,2055129,2055328,2055747,2056254,2056570,2056819,2057940	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); next to GOX17 and GOX16
chr16	2058820	2063195	2059786	2063004	-	GOX19	Cre16.g657250.t1.2		2062939,2062770,2062579,2062305,2062040,2061829,2061638,2061239,2060732,2060386,2060136,2058820	2063195,2062858,2062634,2062404,2062200,2061888,2061723,2061466,2061110,2060554,2060260,2059957	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); does not contain a hydroxyproline-rich region; next to GOX17
chr16	2063242	2066886	2064188	2066726	-	CPI1	Cre16.g657300.t1.2		2066588,2066403,2066112,2065664,2065410,2065089,2064601,2063242	2066886,2066486,2066153,2065774,2065487,2065202,2064722,2064327	Cycloeucalenol cycloisomerase (Cycloeucalenol--obtusifoliol isomerase) (Cyclopropyl sterol isomerase) (CCI)
chr16	2067046	2071529	2067656	2070728	+	Cre16.g657350.t1.2	Cre16.g657350.t1.2		2067046,2067500,2068227,2068498,2069041,2069500,2069797,2070144,2070581	2067239,2068041,2068323,2068636,2069111,2069590,2069949,2070311,2071529	
chr16	2071576	2074357	2071864	2074281	+	Cre16.g657400.t1.1	Cre16.g657400.t1.1		2071576,2072054,2072533,2072769,2073256,2073574,2073932	2071965,2072105,2072566,2072963,2073386,2073722,2074357	
chr16	2074536	2080153	2074615	2079582	+	MPA12	Cre16.g657450.t1.1		2074536,2075089,2075481,2075865,2076163,2076436,2076755,2077135,2077473,2077862,2078215,2078717,2079006,2079432	2074917,2075227,2075566,2075928,2076195,2076571,2076937,2077240,2077583,2078091,2078273,2078815,2079110,2080153	
chr16	2080206	2081827	2080300	2081684	+	Cre16.g657500.t1.2	Cre16.g657500.t1.2		2080206,2081035,2081256,2081510	2080832,2081090,2081309,2081827	
chr16	2081896	2086017	2082529	2085744	-	Cre16.g657550.t1.1	Cre16.g657550.t1.1		2085654,2084976,2084472,2084054,2083556,2083088,2081896	2086017,2085522,2084677,2084274,2083739,2083312,2082823	
chr16	2086156	2091197	2086406	2090501	+	Cre16.g657600.t1.1	Cre16.g657600.t1.1		2086156,2087652,2088483,2088628,2088880,2089087,2089612,2089952	2087501,2088410,2088521,2088684,2088942,2089428,2089713,2091197	
chr16	2086156	2091197	2086406	2090501	+	Cre16.g657600.t2.1	Cre16.g657600.t2.1		2086156,2087652,2088628,2088880,2089087,2089612,2089952	2087501,2088410,2088684,2088942,2089428,2089713,2091197	
chr16	2091256	2092942	2091368	2092443	+	FAP35	Cre16.g657650.t1.2		2091256,2091462,2091734,2091981,2092162,2092304	2091396,2091509,2091789,2092053,2092195,2092942	Flagellar Associated Protein, found in the flagellar proteome
chr16	2092997	2097635	2093540	2097371	-	Cre16.g657700.t1.1	Cre16.g657700.t1.1		2096547,2095983,2095489,2095190,2094706,2094417,2094053,2092997	2097635,2096239,2095647,2095329,2094872,2094487,2094116,2093796	
chr16	2097766	2103997	2097884	2102607	+	CCD2	Cre16.g657750.t1.2		2097766,2098188,2098620,2099096,2100318	2097981,2098295,2098696,2099158,2103997	related to carotenoid 9,10-9',10' cleavage dioxygenase which in land plants participates in abscisic acid biosynthesis; could play a similar role (PMID: 16327238)
chr16	2104046	2109759	2104110	2109080	+	CCD3	Cre16.g657800.t1.1		2104046,2104589,2104852,2105216,2105729,2106058,2106488,2106984,2107321,2107818,2108230,2108631,2108927	2104137,2104657,2104911,2105362,2105842,2106180,2106589,2107092,2107515,2108005,2108366,2108775,2109759	related to carotenoid 9,10-9',10' cleavage dioxygenase which in land plants participates in abscisic acid biosynthesis; could play a similar role (PMID: 16327238)
chr16	2109936	2118343	2110221	2118013	+	SEC63	Cre16.g657850.t1.2		2109936,2110467,2110901,2111690,2112050,2112370,2112849,2113223,2113621,2114017,2114468,2114776,2115071,2115578,2116017,2116484,2116901,2117335,2117855	2110359,2110521,2110971,2111800,2112169,2112591,2112927,2113314,2113683,2114115,2114512,2114923,2115201,2115753,2116164,2116683,2117009,2117581,2118343	63 kDa DnaJ-like protein, interacts with BIP (Hsp70-Homolog in ER) in preprotein import; closest homolog in higher plants is rice Q7XVN7
chr16	2118396	2120745	2118439	2120331	+	Cre16.g657900.t1.2	Cre16.g657900.t1.2		2118396,2118743,2119150,2119613,2119934	2118515,2118924,2119191,2119713,2120745	
chr16	2120861	2127155	2121420	2127049	-	SSA5	Cre16.g657950.t1.1		2127046,2126470,2125979,2125523,2124597,2124084,2123867,2123528,2123279,2122755,2122423,2122143,2120861	2127155,2126553,2126094,2125652,2124707,2124284,2123926,2123610,2123345,2122916,2122510,2122273,2121801	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr16	2127296	2127657	2127329	2127626	+	Cre16.g657964.t1.1	Cre16.g657964.t1.1		2127296,2127537	2127447,2127657	
chr16	2127660	2133095	2127856	2132845	-	Cre16.g657979.t1.2	Cre16.g657979.t1.2		2132685,2131950,2130592,2130060,2129749,2129328,2128958,2128369,2127660	2133095,2132584,2131652,2130171,2129802,2129450,2129070,2128462,2128120	
chr16	2127660	2133095	2127856	2132845	-	Cre16.g657979.t2.1	Cre16.g657979.t2.1		2132685,2131950,2130592,2130060,2129749,2129328,2128958,2128369,2127660	2133095,2132347,2131652,2130171,2129802,2129450,2129070,2128462,2128120	
chr16	2133196	2136853	2133278	2136785	+	Cre16.g658000.t1.1	Cre16.g658000.t1.1		2133196,2133673,2134418,2134919,2135332,2135624,2136418	2133430,2134094,2134575,2135032,2135399,2136130,2136853	
chr16	2137486	2141134	2137628	2139698	+	Cre16.g658075.t1.1	Cre16.g658075.t1.1		2137486,2137887,2138094,2138291,2138576,2138933,2139113,2139345,2139645	2137778,2137935,2138201,2138319,2138702,2138940,2139130,2139489,2141134	
chr16	2141170	2145975	2142171	2145934	-	Cre16.g658150.t1.2	Cre16.g658150.t1.2		2141170	2145975	
chr16	2146296	2176840	2146562	2176429	+	Cre16.g658200.t1.1	Cre16.g658200.t1.1		2146296,2147100,2147663,2148117,2148569,2148945,2149361,2149749,2150375,2151055,2151952,2152466,2153995,2154447,2154701,2155093,2155364,2156321,2156621,2157111,2157294,2157659,2158586,2159109,2159659,2160450,2161078,2161453,2162047,2162570,2163120,2163911,2164545,2165032,2168413,2168792,2169539,2170089,2170604,2171349,2171798,2172050,2172546,2173152,2173412,2175314,2175938,2176251	2146796,2147309,2147800,2148232,2148635,2149052,2149426,2149953,2150643,2151519,2152054,2153787,2154108,2154523,2154862,2155182,2156120,2156471,2156715,2157151,2157354,2158220,2158934,2159468,2160115,2160608,2161191,2161681,2162395,2162929,2163576,2164069,2164658,2168225,2168492,2169322,2169936,2170319,2170901,2171561,2171861,2172140,2172941,2173250,2175145,2175737,2176070,2176840	
chr16	2177412	2180698	2177918	2180480	-	Cre16.g658250.t1.1	Cre16.g658250.t1.1		2180239,2179796,2179574,2179338,2177412	2180698,2179811,2179620,2179407,2178990	
chr16	2177412	2179998	2177918	2179914	-	Cre16.g658250.t2.1	Cre16.g658250.t2.1		2179796,2179574,2179338,2177412	2179998,2179660,2179407,2178990	
chr16	2180579	2186310	2181042	2185881	+	Cre16.g658300.t1.1	Cre16.g658300.t1.1		2180579,2182021,2182191,2182558,2182818,2183095,2183494,2183895,2184151,2184635,2184962	2181820,2182121,2182394,2182647,2182859,2183232,2183615,2183995,2184276,2184734,2186310	
chr16	2180579	2186310	2181042	2185881	+	Cre16.g658300.t2.1	Cre16.g658300.t2.1		2180579,2182021,2182191,2182558,2182818,2183095,2183494,2183895,2184151,2184635,2184962	2181820,2182115,2182394,2182647,2182859,2183232,2183615,2183995,2184282,2184734,2186310	
chr16	2180579	2186310	2181042	2185881	+	Cre16.g658300.t3.1	Cre16.g658300.t3.1		2180579,2182021,2182191,2182558,2182818,2183095,2183494,2183895,2184151,2184635,2184962	2181820,2182115,2182394,2182647,2182859,2183232,2183615,2183995,2184276,2184734,2186310	
chr16	2186359	2194000	2187001	2193660	+	Cre16.g658350.t1.1	Cre16.g658350.t1.1		2186359,2186867,2188727,2189132,2189412,2189722,2190041,2190406,2190747,2191089,2191400,2193076	2186705,2188481,2188809,2189236,2189537,2189763,2190178,2190503,2190841,2191193,2192914,2194000	
chr16	2194002	2195908	2194829	2195796	-	FDX2	Cre16.g658400.t1.2		2195631,2195185,2194002	2195908,2195280,2194934	Fe2S2 containing redox protein, predicted chloroplast localization
chr16	2196018	2199198	2196433	2199014	-	Cre16.g658450.t1.2	Cre16.g658450.t1.2		2198995,2198785,2198291,2197888,2197323,2196949,2196018	2199198,2198876,2198473,2198062,2197492,2197051,2196609	
chr16	2199253	2205228	2200116	2205192	-	Cre16.g658526.t1.1	Cre16.g658526.t1.1		2204924,2204358,2203567,2203071,2202763,2202166,2201530,2199253	2205228,2204593,2203726,2203181,2202818,2202258,2201719,2201099	
chr16	2205283	2207848	2205973	2207699	-	Cre16.g658600.t1.1	Cre16.g658600.t1.1		2207563,2207380,2206974,2206639,2206293,2205283	2207848,2207445,2207120,2206743,2206385,2206110	ts-lethal mutant block at S/M (PMID 29743196)
chr16	2207959	2218144	2208147	2217470	+	MYO1	Cre16.g658650.t1.1		2207959,2208455,2209033,2209446,2209860,2210157,2210431,2210792,2211282,2211598,2211886,2212239,2212443,2212887,2213227,2213586,2214193,2214768,2215091,2215300,2215668,2216134,2216586,2217063,2217359	2208351,2208718,2209158,2209652,2209985,2210260,2210492,2210990,2211423,2211654,2211947,2212341,2212763,2213120,2213451,2213966,2214603,2214954,2215178,2215554,2215996,2216456,2216918,2217200,2218144	
chr16	2218389	2220260	2218492	2220224	+	FAP376	Cre16.g658700.t1.1		2218389,2218763,2218888,2219256,2219789,2220033	2218646,2218801,2218990,2219457,2219858,2220260	
chr16	2220309	2222330	2220487	2221676	+	Cre16.g658725.t1.1	Cre16.g658725.t1.1		2220309	2222330	
chr16	2222379	2228590	2222687	2228238	+	Cre16.g658750.t1.1	Cre16.g658750.t1.1		2222379,2223094,2223475,2223775,2224120,2225354,2226091,2227696,2227989	2222783,2223172,2223642,2223866,2225133,2225929,2227572,2227758,2228590	
chr16	2229039	2232710	2229562	2231744	+	Cre16.g658775.t1.1	Cre16.g658775.t1.1		2229039,2229436,2229899,2230255,2230814,2231744	2229338,2229730,2229997,2230710,2231504,2232710	
chr16	2232959	2235567	2233348	2234726	+	Cre16.g658800.t1.1	Cre16.g658800.t1.1		2232959,2233344,2234359	2233157,2234154,2235567	
chr16	2235853	2239608	2236905	2239323	-	Cre16.g658850.t1.1	Cre16.g658850.t1.1		2239187,2238954,2238709,2238386,2238118,2237941,2237676,2237308,2235853	2239608,2239023,2238816,2238548,2238246,2238008,2237793,2237385,2237085	
chr16	2239856	2258118	2240939	2257804	-	TRP10	Cre16.g658900.t1.1		2257772,2256557,2256150,2255661,2255118,2254584,2253946,2253663,2253236,2252706,2252142,2251155,2250731,2249681,2249185,2248754,2248467,2248096,2247411,2247133,2246626,2245906,2245364,2244931,2244511,2244089,2243580,2243078,2242579,2242252,2241860,2241372,2239856	2258118,2257619,2256305,2255813,2255237,2254652,2254254,2253746,2253337,2252810,2252231,2251862,2250853,2250382,2249310,2248861,2248532,2248236,2247534,2247242,2246784,2246054,2245568,2245057,2244618,2244189,2243689,2243215,2242743,2242317,2241992,2241461,2241104	Similar to transient potential receptor channel
chr16	2258649	2259940	2258865	2259641	+	Cre16.g658926.t1.1	Cre16.g658926.t1.1		2258649,2259009,2259565	2258942,2259065,2259940	
chr16	2259944	2265318	2260429	2265174	-	Cre16.g658950.t1.1	Cre16.g658950.t1.1		2263299,2262598,2261813,2261449,2261144,2260785,2259944	2265318,2263167,2262049,2261575,2261274,2260904,2260648	
chr16	2265419	2274220	2265535	2273626	+	ATG13	Cre16.g659000.t1.1		2265419,2265831,2266030,2266339,2266851,2267095,2267409,2268071,2268497,2268760,2269067,2269840,2271384,2271864,2273167,2273548	2265682,2265923,2266150,2266481,2266922,2267175,2267812,2268162,2268654,2268886,2269613,2270908,2271669,2272868,2273288,2274220	Regulatory subunit of the Atg1p signaling complex; stimulates Atg1p kinase activity; required for vesicle formation during autophagy
chr16	2274223	2289978	2274906	2289453	-	Cre16.g659050.t1.1	Cre16.g659050.t1.1		2289647,2288943,2288031,2287623,2286880,2286242,2285757,2285181,2284758,2284389,2284001,2283615,2283400,2282854,2282268,2281796,2281181,2280772,2280430,2279965,2279256,2278731,2277930,2276094,2275583,2274223	2289978,2289458,2288772,2287873,2287410,2286551,2285934,2285478,2284890,2284522,2284141,2283773,2283474,2283117,2282609,2282107,2281565,2280909,2280542,2280102,2279693,2278867,2278405,2277619,2275894,2275404	
chr16	2290319	2294960	2290730	2294688	+	Cre16.g659100.t1.1	Cre16.g659100.t1.1		2290319,2291069,2291661,2292177,2292782,2293102,2293474,2293932,2294289	2290868,2291308,2291803,2292348,2292842,2293226,2293616,2293995,2294960	
chr16	2295009	2300050	2295075	2299570	+	Cre16.g659150.t1.1	Cre16.g659150.t1.1		2295009,2296381,2296796,2297211,2297565,2298087,2298346	2296125,2296446,2296894,2297246,2297772,2298181,2300050	
chr16	2300238	2306468	2300755	2306340	-	CYP742A1	Cre16.g659200.t1.1		2306075,2305831,2305444,2304670,2304150,2303729,2303370,2303038,2302553,2302245,2301726,2300238	2306468,2305918,2305548,2305000,2304269,2303828,2303448,2303117,2302759,2302342,2302016,2300980	Cytochrome P450, most like CYP4 family sequences in animals
chr16	2306579	2308941	2306734	2307494	+	CYB5	Cre16.g659250.t1.2		2306579,2307315	2306894,2308941	linked to CYB1 and CYB2
chr16	2309069	2310903	2309534	2310136	+	CYB2	Cre16.g659300.t1.1		2309069,2309960	2309700,2310903	linked to CYB1 and CYB5
chr16	2311223	2313098	2311914	2313035	-	CYB1	Cre16.g659350.t1.2		2312911,2312755,2312428,2311223	2313098,2312784,2312516,2312091	linked to CYB2 and CYB5
chr16	2313335	2318513	2314777	2318370	-	Cre16.g659400.t1.1	Cre16.g659400.t1.1		2318079,2317943,2317729,2317568,2317278,2316469,2316095,2315623,2315240,2313335	2318513,2318014,2317881,2317663,2317433,2316663,2316226,2315779,2315394,2315047	
chr16	2313335	2318513	2314777	2318370	-	Cre16.g659400.t2.1	Cre16.g659400.t2.1		2318079,2317943,2317729,2317568,2317278,2316469,2316095,2315623,2315240,2313335	2318513,2318014,2317881,2317663,2317433,2316663,2316226,2315776,2315394,2315047	
chr16	2319357	2323078	2319755	2322839	-	Cre16.g659450.t1.2	Cre16.g659450.t1.2		2322668,2322334,2321937,2321509,2321227,2321002,2320712,2320546,2320346,2319357	2323078,2322399,2322083,2321607,2321285,2321089,2320872,2320612,2320423,2320223	
chr16	2323133	2327032	2323445	2326805	-	Cre16.g659500.t1.2	Cre16.g659500.t1.2		2326649,2326329,2325893,2325553,2325268,2324988,2324664,2324427,2324104,2323133	2327032,2326394,2326039,2325651,2325326,2325075,2324824,2324493,2324181,2323820	
chr16	2327149	2333258	2328137	2332831	-	Cre16.g659550.t1.1	Cre16.g659550.t1.1		2332676,2332286,2331977,2331494,2331090,2330850,2330502,2330169,2329728,2329246,2327149	2333258,2332346,2332056,2331740,2331157,2330880,2330560,2330250,2329822,2329390,2328827	
chr16	2327149	2333258	2328137	2332831	-	Cre16.g659550.t2.1	Cre16.g659550.t2.1		2332676,2332286,2331977,2331494,2331090,2330850,2330502,2330169,2329728,2329246,2327149	2333258,2332346,2332056,2331680,2331157,2330880,2330560,2330250,2329822,2329390,2328827	
chr16	2327149	2333388	2328137	2332572	-	Cre16.g659550.t3.1	Cre16.g659550.t3.1		2332676,2332540,2332286,2331977,2331494,2331090,2330850,2330502,2330169,2329728,2329246,2327149	2333388,2332618,2332346,2332056,2331680,2331157,2330880,2330560,2330250,2329822,2329390,2328827	
chr16	2333479	2342995	2333552	2342823	+	Cre16.g659600.t1.1	Cre16.g659600.t1.1		2333479,2333779,2334387,2334859,2335517,2335976,2336300,2337301,2337833,2338236,2338602,2338936,2339350,2340143,2340899,2341773,2342130	2333672,2333945,2334570,2335026,2335649,2336052,2336416,2337444,2337982,2338268,2338692,2339048,2339642,2340200,2341350,2341974,2342995	May contain additional coding sequence in intronic N-island PMID: 27175017
chr16	2343303	2349088	2343708	2348887	-	Cre16.g659650.t1.1	Cre16.g659650.t1.1		2347991,2347503,2346970,2346541,2345687,2344845,2344361,2343303	2349088,2347605,2347238,2346601,2346102,2345457,2344489,2344014	
chr16	2349233	2350838	2349996	2350480	-	Cre16.g659667.t1.1	Cre16.g659667.t1.1		2350126,2349233	2350838,2349996	
chr16	2349233	2350838	2349975	2350480	-	Cre16.g659667.t2.1	Cre16.g659667.t2.1		2350222,2349233	2350838,2349996	
chr16	2350939	2352908	2351525	2352351	+	Cre16.g659700.t1.2	Cre16.g659700.t1.2		2350939,2351517,2351761,2352019,2352260	2351012,2351592,2351835,2352094,2352908	
chr16	2352943	2356728	2353179	2356466	-	CEP15	Cre16.g659750.t1.1		2356314,2356154,2355815,2355642,2355119,2354903,2354590,2354209,2353784,2353386,2352943	2356728,2356213,2355907,2355705,2355233,2354952,2354685,2354296,2353958,2353598,2353228	Cysteine-type endopeptidase, papain type
chr16	2356869	2363590	2356916	2362544	+	Cre16.g659800.t1.2	Cre16.g659800.t1.2		2356869,2357201,2357408,2357984,2358320,2358685,2359143,2360291,2360661,2360998,2361292,2362432	2356983,2357235,2357783,2358105,2358406,2358803,2359213,2360427,2360762,2361052,2361334,2363590	
chr16	2363709	2367364	2363989	2366917	+	CGL37	Cre16.g659850.t1.2		2363709,2364190,2364621,2365045,2365424,2366098,2366719	2364019,2364273,2364732,2365176,2365509,2366196,2367364	Conserved in the Green Lineage
chr16	2367729	2370792	2368196	2370738	-	Cre16.g659900.t1.1	Cre16.g659900.t1.1		2370612,2370264,2369942,2369647,2369001,2368506,2367729	2370792,2370357,2370039,2369709,2369150,2368564,2368290	
chr16	2370909	2375432	2370988	2374561	+	PRPS5	Cre16.g659950.t1.1		2370909,2372615,2373091,2373597,2373918,2374264	2372062,2372755,2373276,2373770,2374067,2375432	imported to chloroplast; Chloroplast Small Ribosomal Subunit Protein S5
chr16	2375757	2378718	2376605	2378554	-	CPLD63	Cre16.g660000.t1.2		2378315,2378129,2377735,2377269,2375757	2378718,2378219,2378028,2377438,2376813	
chr16	2378829	2382100	2379147	2381675	+	Cre16.g660024.t1.1	Cre16.g660024.t1.1		2378829,2379096,2379585,2379913,2380965,2381297	2378993,2379261,2379662,2380650,2381108,2382100	
chr16	2382133	2386158	2383279	2385744	-	Cre16.g660050.t1.1	Cre16.g660050.t1.1		2385722,2385470,2385139,2384734,2384252,2383730,2382133	2386158,2385644,2385232,2384904,2384380,2383986,2383487	
chr16	2386429	2389204	2386641	2388668	+	Cre16.g660100.t1.1	Cre16.g660100.t1.1		2386429,2386887,2387213,2387703,2388054,2388494	2386821,2386967,2387474,2387914,2388221,2389204	
chr16	2389241	2392978	2389467	2392908	-	Cre16.g660150.t1.2	Cre16.g660150.t1.2		2392908,2392673,2392434,2389834,2389241	2392978,2392781,2392578,2389899,2389513	
chr16	2393136	2396868	2395306	2396069	-	Cre16.g660225.t1.1	Cre16.g660225.t1.1		2396048,2395564,2393136	2396868,2395773,2395363	
chr16	2397049	2401014	2397166	2400157	+	Cre16.g660300.t1.2	Cre16.g660300.t1.2		2397049,2398894,2399869	2398756,2399484,2401014	
chr16	2401193	2403028	2401678	2402240	-	Cre16.g660331.t1.2	Cre16.g660331.t1.2		2402052,2401193	2403028,2401847	
chr16	2403569	2414073	2404592	2414002	+	Cre16.g660350.t1.1	Cre16.g660350.t1.1		2403569,2404261,2404970,2406041,2406525,2407382,2407792,2408093,2408402,2409780,2410788,2411153,2411700,2412340,2412708,2413232,2413648	2404144,2404874,2405769,2406383,2407253,2407494,2407915,2408185,2409581,2409937,2410968,2411358,2411869,2412424,2412829,2413364,2414073	
chr16	2414739	2426740	2415068	2426034	+	CSR1	Cre16.g660390.t1.1		2414739,2415589,2416592,2416921,2417383,2417800,2418181,2418619,2419055,2419345,2419655,2420334,2421165,2421755,2421959,2422428,2422838,2423105,2423446,2423729,2424139,2424500,2424868,2425093,2425928	2415158,2416363,2416715,2417035,2417543,2417987,2418266,2418738,2419183,2419482,2419815,2420654,2421582,2421822,2422085,2422559,2422896,2423236,2423506,2423836,2424222,2424553,2424945,2425145,2426740	
chr16	2414739	2426740	2415068	2426034	+	CSR1	Cre16.g660390.t2.1		2414739,2415589,2416592,2416921,2417383,2417800,2418181,2418619,2419055,2419345,2419655,2421165,2421755,2421959,2422428,2422838,2423105,2423446,2423729,2424139,2424500,2424868,2425093,2425928	2415158,2416363,2416715,2417035,2417543,2417987,2418266,2418738,2419183,2419482,2419815,2421582,2421822,2422085,2422559,2422896,2423236,2423506,2423836,2424222,2424553,2424945,2425145,2426740	
chr16	2431078	2433282	2431157	2431326	+	Cre16.g660430.t1.1	Cre16.g660430.t1.1		2431078	2433282	
chr16	2433329	2437990	2434326	2437347	+	Cre16.g660470.t1.1	Cre16.g660470.t1.1		2433329,2434216,2435021,2437347	2433474,2434356,2435845,2437990	
chr16	2438039	2444480	2438137	2443803	+	Cre16.g660550.t1.2	Cre16.g660550.t1.2		2438039,2438579,2440644,2443060,2443753	2438437,2440160,2442457,2443669,2444480	
chr16	2444483	2461618	2445721	2460912	-	Cre16.g660601.t1.1	Cre16.g660601.t1.1		2461283,2460830,2460162,2457195,2456926,2456463,2456057,2455725,2455420,2454970,2454235,2453879,2452973,2452673,2452329,2451818,2451216,2450637,2450397,2449984,2449501,2449157,2448758,2448461,2447877,2447516,2447248,2446858,2446463,2445977,2444483	2461618,2461030,2460197,2460098,2457072,2456619,2456118,2455820,2455488,2454983,2454712,2453992,2453129,2452728,2452421,2451900,2451462,2450693,2450486,2450022,2449574,2449226,2448893,2448559,2448061,2447585,2447300,2446983,2446586,2446103,2445733	
chr16	2459695	2463540	2460786	2461003	+	Cre16.g660651.t1.1	Cre16.g660651.t1.1		2459695,2460766	2459723,2463540	
chr16	2463591	2464703	2463908	2464224	+	Cre16.g660700.t1.2	Cre16.g660700.t1.2		2463591	2464703	
chr16	2467393	2483498	2468754	2483403	-	CC2D2A	Cre16.g660750.t1.1		2483075,2482702,2482252,2481361,2480969,2480367,2479985,2479267,2478885,2478185,2477961,2477659,2476943,2476482,2475842,2475329,2474761,2474218,2473977,2473217,2472817,2472395,2472026,2471540,2470988,2470635,2470419,2470164,2469822,2469314,2467393	2483498,2482988,2482475,2482039,2481169,2480567,2480161,2479638,2479037,2478489,2478059,2477740,2477431,2476643,2475932,2475499,2474987,2474478,2474045,2473392,2472970,2472574,2472190,2471683,2471185,2470784,2470506,2470249,2469947,2469434,2468870	human homolog is causative of Joubert and Meckel syndromes
chr16	2483649	2488500	2483786	2487859	+	TIM44	Cre16.g660800.t1.2		2483649,2483929,2484119,2484311,2485504,2485908,2486236,2486861,2487254,2487619	2483813,2484011,2484167,2484712,2485545,2486006,2486361,2486962,2487307,2488500	Similar to mitochondrial import inner membrane translocase subunit TIM44
chr16	2488502	2491348	2489106	2491157	-	Cre16.g660850.t1.2	Cre16.g660850.t1.2		2491141,2490826,2490491,2490219,2489824,2489491,2488502	2491348,2490936,2490555,2490267,2489922,2489543,2489274	
chr16	2493133	2507288	2493150	2506988	-	KIL10	Cre16.g660900.t1.2		2506885,2506673,2506015,2505639,2505270,2504837,2504549,2504114,2503483,2503177,2502846,2502618,2502199,2501926,2501462,2501223,2500955,2500242,2499902,2499658,2496902,2496394,2496079,2495741,2495452,2495166,2494753,2494463,2494092,2493642,2493133	2507288,2506742,2506151,2505697,2505339,2504979,2504665,2504218,2503849,2503285,2502942,2502689,2502276,2501988,2501524,2501291,2501038,2500415,2500036,2499705,2497003,2496555,2496185,2495842,2495500,2495295,2494833,2494575,2494166,2493737,2493339	closest match to kinesin-4/1 family.  Small sequence gap in intronic region; not clear which mammalan protein is most similar (peptide is unique to this kinesin)
chr16	2507363	2510738	2507848	2510530	-	Cre16.g660951.t1.1	Cre16.g660951.t1.1		2509897,2509577,2509340,2508694,2508368,2507363	2510738,2509653,2509428,2509066,2508454,2508035	
chr16	2511028	2515898	2513759	2515636	-	Cre16.g661000.t1.2	Cre16.g661000.t1.2		2515573,2515433,2515081,2514725,2514180,2511028	2515898,2515510,2515182,2514775,2514557,2513966	
chr16	2516562	2519298	2516874	2519233	-	RPL34	Cre16.g661050.t1.2		2519154,2518952,2518690,2518522,2516562	2519298,2519031,2518793,2518567,2516919	Cytosolic 60S large ribosomal subunit protein L34
chr16	2519399	2524020	2519671	2523465	+	MAPK7	Cre16.g661100.t1.2		2519399,2519858,2520653,2520998,2521324,2521589,2522033,2522559	2519679,2519936,2520811,2521136,2521426,2521712,2522272,2524020	Serine/threonine protein kinase MAK (male germ cell-associated kinase, Mitogen-Activated Protein Kinase Homolog 7); downstream kinase in the canonical MAP kinase pathway; found in the flagellar proteome [PMID: 15998802]
chr16	2524023	2527471	2524769	2527344	-	CGL5	Cre16.g661150.t1.1		2527221,2526529,2526160,2525764,2525494,2525206,2524023	2527471,2526631,2526307,2525872,2525601,2525288,2524968	
chr16	2531095	2535499	2531206	2533984	+	Cre16.g661200.t1.2	Cre16.g661200.t1.2		2531095,2531334,2531703,2531899,2532127,2532437,2532904	2531248,2531411,2531768,2531931,2532177,2532646,2535499	
chr16	2536025	2540376	2536176	2539388	+	Cre16.g661250.t1.2	Cre16.g661250.t1.2		2536025,2536384,2536602,2536832,2537216,2537552,2537750	2536239,2536455,2536706,2536882,2537383,2537593,2540376	
chr16	2541789	2546796	2542017	2545293	+	Cre16.g661300.t1.1	Cre16.g661300.t1.1		2541789,2542410,2542660,2542911,2543154,2543504,2543745,2544141,2544346	2542071,2542490,2542698,2542976,2543204,2543550,2543865,2544186,2546796	
chr16	2541789	2546796	2542017	2545293	+	Cre16.g661300.t2.1	Cre16.g661300.t2.1		2541789,2542410,2542660,2542911,2543154,2543504,2543745,2544141,2544342	2542071,2542490,2542698,2542976,2543204,2543550,2543865,2544182,2546796	
chr16	2546845	2551781	2546958	2551355	+	RBCMT1	Cre16.g661350.t1.2		2546845,2547722,2548276,2548660,2549160,2549468,2549905,2550215,2550599,2550992,2551308	2547470,2547902,2548367,2548762,2549231,2549564,2549969,2550304,2550702,2551080,2551781	EC:2.1.1.127
chr16	2551789	2570794	2552127	2570566	-	Cre16.g661400.t1.1	Cre16.g661400.t1.1		2570515,2570069,2569825,2569409,2569106,2568461,2565105,2564853,2564363,2561590,2561335,2561108,2560833,2560103,2559551,2559221,2558623,2558390,2557830,2557505,2557188,2556408,2556125,2554889,2552419,2551789	2570794,2570230,2569873,2569701,2569273,2568688,2568255,2565010,2564659,2564166,2561415,2561201,2560936,2560651,2559846,2559341,2559103,2558415,2558143,2557679,2557282,2557089,2556205,2555923,2554668,2552280	
chr16	2570925	2574146	2571176	2572545	+	HTV3	Cre16.g661450.t1.2		2570925,2571307,2571657,2571949,2572188,2572480	2571203,2571433,2571757,2572023,2572263,2574146	
chr16	2574385	2580716	2575144	2578779	+	Cre16.g661500.t1.2	Cre16.g661500.t1.2		2574385,2575964,2576548,2576827,2577747,2578071,2578402	2575260,2576404,2576686,2577283,2577925,2578221,2580716	
chr16	2582081	2586116	2582860	2585917	-	Cre16.g661550.t1.2	Cre16.g661550.t1.2		2585619,2585243,2584812,2584401,2583729,2583297,2582081	2586116,2585340,2584902,2584528,2583793,2583425,2582990	
chr16	2586229	2593634	2586802	2592841	-	OPR102	Cre16.g661588.t1.1		2590270,2589777,2589490,2588933,2588574,2588092,2587415,2586229	2593634,2590013,2589585,2589310,2588671,2588362,2587894,2587264	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 155 codons at 5'-end: MLSNRGAGCGAPSQPNAAAGGATAAFDPAGQLSCRKRRRGCSVADALARNTGRGPVRDLGTRAARASCLCTCGWAGPSAPVDAATCSGSALASRGCHVARCCWSSGRPAPRGSPALCPFGSIPYSRTGVKAVPAVGSSSAAEATDSAPRTLLAAK
chr16	2593835	2597826	2594195	2594850	+	Cre16.g661626.t1.2	Cre16.g661626.t1.2		2593835,2594411,2594712	2594224,2594492,2597826	
chr16	2597875	2599699	2598177	2598355	+	Cre16.g661638.t1.1	Cre16.g661638.t1.1		2597875	2599699	
chr16	2600789	2609554	2601713	2608346	-	Cre16.g661650.t1.1	Cre16.g661650.t1.1		2609428,2607575,2606655,2606339,2604318,2603814,2603395,2602311,2602059,2600789	2609554,2608703,2607155,2606395,2606096,2604124,2603633,2603203,2602202,2601926	
chr16	2610185	2613715	2610348	2612747	+	Cre16.g661700.t1.2	Cre16.g661700.t1.2		2610185,2611264,2611646,2612105,2612466	2610504,2611323,2611825,2612192,2613715	
chr16	2615285	2618986	2615563	2617546	+	Cre16.g661750.t1.2	Cre16.g661750.t1.2		2615285,2615557,2616017,2616514,2616914,2617493	2615320,2615744,2616318,2616639,2617316,2618986	
chr16	2619035	2621884	2619273	2621644	+	Cre16.g661800.t1.2	Cre16.g661800.t1.2		2619035,2619421,2619575,2619821,2620521,2620981,2621290	2619294,2619452,2619646,2619929,2620646,2621148,2621884	
chr16	2619035	2621884	2619447	2621644	+	Cre16.g661800.t2.1	Cre16.g661800.t2.1		2619035,2619421,2619575,2619821,2620521,2620981,2621290	2619294,2619452,2619646,2619929,2620646,2621148,2621884	
chr16	2622109	2626494	2624005	2626351	-	Cre16.g661850.t1.1	Cre16.g661850.t1.1		2626346,2626238,2625814,2625232,2624911,2624235,2622109	2626494,2626300,2626001,2625533,2625036,2624637,2624058	
chr16	2626695	2627476	2626873	2627090	+	Cre16.g661876.t1.1	Cre16.g661876.t1.1		2626695	2627476	
chr16	2627965	2635024	2628761	2634749	-	HEL61	Cre16.g661900.t1.1		2634507,2634101,2633670,2633398,2633098,2632790,2632346,2631879,2629943,2627965	2635024,2634248,2633912,2633480,2633223,2632928,2632564,2632192,2631752,2629781	
chr16	2635584	2655724	2636241	2655199	-	Cre16.g661950.t1.2	Cre16.g661950.t1.2		2655410,2648143,2643753,2641493,2635584	2655724,2655227,2647985,2643643,2641341	
chr16	2655813	2657154	2656216	2656556	-	Cre16.g661976.t1.1	Cre16.g661976.t1.1		2656854,2655813	2657154,2656721	
chr16	2657285	2661697	2657717	2661249	+	HEL62	Cre16.g662000.t1.2		2657285,2658083,2658420,2658843,2659099,2659367,2659797,2660157,2660690	2657845,2658230,2658662,2658925,2659224,2659505,2660015,2660470,2661697	
chr16	2662575	2665490	2663362	2664526	+	Cre16.g662052.t1.1	Cre16.g662052.t1.1		2662575,2664001,2664476	2663391,2664392,2665490	
chr16	2665589	2674724	2666413	2673993	-	Cre16.g662100.t1.2	Cre16.g662100.t1.2		2674263,2673931,2672748,2672333,2672112,2671603,2671181,2670606,2669954,2669656,2669438,2669051,2668075,2667583,2667027,2665589	2674724,2674124,2673763,2672405,2672155,2671881,2671400,2670913,2670359,2669752,2669477,2669137,2668861,2667634,2667439,2666744	
chr16	2674857	2677626	2674904	2677126	+	CCB1	Cre16.g662150.t1.2		2674857,2675282,2675853,2676548,2677069	2675202,2675518,2675980,2676637,2677626	involved in heme c covalent linkage to cyt b6; conserved in plant lineage and diatoms (organisms performing oxygenic photosynthesis). Localized to chloroplast. PMID: 17535914
chr16	2677675	2681506	2677721	2680420	+	Cre16.g662200.t1.1	Cre16.g662200.t1.1		2677675,2677873,2678164,2678721,2679051,2679623,2679916,2680303	2677806,2677956,2678219,2678825,2679155,2679759,2680054,2681506	
chr16	2681509	2692654	2682338	2692562	-	Cre16.g662250.t1.1	Cre16.g662250.t1.1		2692415,2692267,2691912,2691339,2690801,2690090,2689636,2689067,2688601,2688246,2687802,2687412,2686847,2686077,2685638,2685384,2685017,2684530,2684038,2683784,2683401,2682825,2681509	2692654,2692320,2692014,2691438,2690882,2690213,2689745,2689213,2688662,2688348,2687965,2687457,2687024,2686299,2685753,2685457,2685164,2684636,2684112,2683900,2683487,2682964,2682465	May contain additional coding sequence in intronic N-island PMID: 27175017
chr16	2692748	2695007	2692891	2694315	+	SMP8	Cre16.g662300.t1.2		2692748,2693397,2694237	2693011,2693492,2695007	
chr16	2695290	2712324	2695639	2711566	+	Cre16.g662350.t1.1	Cre16.g662350.t1.1		2695290,2698284,2698614,2699134,2699723,2700362,2700792,2701346,2701869,2702267,2702805,2703277,2703820,2704418,2704904,2706209,2706887,2707673,2708385,2710216	2697952,2698425,2698705,2699391,2700088,2700475,2700903,2701509,2701970,2702331,2702967,2703435,2703951,2704549,2705446,2706568,2707430,2707779,2709971,2712324	a glycosyl transferase
chr16	2712326	2717089	2712972	2716778	-	Cre16.g662450.t1.2	Cre16.g662450.t1.2		2716670,2716152,2715614,2714895,2712326	2717089,2716276,2715815,2715222,2714621	
chr16	2717190	2726644	2717229	2726152	+	Cre16.g662500.t1.2	Cre16.g662500.t1.2		2717190,2717774,2718646,2720897,2722494,2723033,2723495,2723781,2724219,2724628,2725912	2717551,2717865,2719239,2721058,2722675,2723261,2723599,2723903,2724341,2724675,2726644	
chr16	2726704	2728749	2727419	2728635	-	SUM3	Cre16.g662550.t1.2		2728594,2728348,2728133,2727942,2726704	2728749,2728375,2728209,2727990,2727686	Post-translational modification by SUMO modulates many important cellular processes; contains four IDAFVEQEGG motifs at C-terminus, which could be as many sites for cleavage.
chr16	2729467	2732309	2730264	2732277	-	LCI11C	Cre16.g662600.t1.2		2732130,2731920,2731115,2730686,2729467	2732309,2732006,2731672,2730966,2730508	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family; very similar to closely linked LCI11B and LCI11A
chr16	2732364	2738359	2732607	2738210	-	Cre16.g662650.t1.1	Cre16.g662650.t1.1		2737946,2737543,2737174,2736652,2736185,2735755,2735089,2734568,2733428,2732981,2732364	2738359,2737578,2737247,2736751,2736292,2735863,2735240,2734636,2734221,2733356,2732607	Related to GCN5
chr16	2738878	2745089	2741560	2744556	-	Cre16.g662702.t1.1	Cre16.g662702.t1.1		2744846,2744464,2744051,2743540,2743085,2742856,2738878	2745089,2744652,2744246,2743873,2743327,2742862,2742797	
chr16	2748480	2753504	2748703	2751922	+	Cre16.g662750.t1.2	Cre16.g662750.t1.2		2748480,2749242,2749596,2749937,2750182,2750629,2751187	2748757,2749325,2749635,2749970,2750271,2750779,2753504	
chr16	2753514	2758378	2753957	2758325	-	PRP4	Cre16.g662800.t1.2		2758250,2758112,2757743,2757128,2756425,2756117,2755644,2755172,2754666,2753514	2758378,2758170,2757815,2757260,2756685,2756193,2755794,2755302,2754794,2754125	Splicing factor, component of the U4/U6-U5 snRNP complex. Homologue of S. cerevisiae Prp4 protein; ts-lethal mutant was isolated (PMID 29743196)
chr16	2766753	2768279	2766756	2768020	-	Cre16.g662852.t1.1	Cre16.g662852.t1.1		2767993,2767529,2766982,2766753	2768279,2767600,2767100,2766778	
chr16	2768420	2775096	2768501	2773410	+	Cre16.g662902.t1.1	Cre16.g662902.t1.1		2768420,2768645,2768948,2769601,2770173,2770561,2771031,2771658,2772440,2772871	2768563,2768790,2769087,2769933,2770232,2770605,2771105,2771786,2772608,2775096	
chr16	2775150	2777871	2775379	2776578	+	ANK3	Cre16.g662950.t1.1		2775150,2775975,2776380	2775724,2776082,2777871	Protein of unknown function with ankyrin repeats
chr16	2777920	2796660	2777966	2796068	+	Cre16.g662951.t1.2	Cre16.g662951.t1.2		2777920,2778526,2779300,2779792,2780247,2780435,2781191,2781989,2782296,2782702,2783044,2783616,2783995,2784446,2784739,2785169,2785546,2786108,2786404,2786845,2787250,2787706,2788154,2788605,2789160,2789753,2790144,2790611,2791010,2791455,2791791,2792268,2792499,2792938,2793338,2793686,2794070,2795087,2795605,2795981	2777987,2778993,2779458,2780015,2780280,2780650,2781297,2782064,2782391,2782773,2783091,2783726,2784080,2784533,2784840,2785270,2785650,2786290,2786517,2787042,2787354,2787801,2788351,2788706,2789258,2789857,2790245,2790709,2791117,2791556,2791895,2792372,2792600,2793036,2793442,2793802,2794183,2795203,2795703,2796660	
chr16	2796942	2800209	2797709	2799949	-	Cre16.g663000.t1.2	Cre16.g663000.t1.2		2799907,2799563,2799264,2798775,2796942	2800209,2799643,2799427,2798925,2798570	
chr16	2800264	2808419	2800990	2808247	-	Cre16.g663050.t1.1	Cre16.g663050.t1.1		2808131,2807573,2807204,2806603,2806090,2805510,2805049,2804214,2803925,2803549,2803140,2802510,2801898,2801567,2800264	2808419,2807683,2807259,2806781,2806290,2805644,2805135,2804366,2804020,2803707,2803223,2802596,2802061,2801690,2801314	
chr16	2808572	2810719	2808647	2810142	+	ALG7	Cre16.g663100.t1.1		2808572,2809884	2809637,2810719	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase, GT4 family; first enzme of N-glycosylation pathway
chr16	2810724	2813239	2811174	2813155	-	Cre16.g663150.t1.2	Cre16.g663150.t1.2		2813132,2812650,2812239,2811860,2810724	2813239,2812817,2812374,2811967,2811657	
chr16	2813690	2820222	2814503	2818280	+	FAP295	Cre16.g663200.t1.1		2813690,2814486,2814788,2815015,2815286,2815755,2816213,2816518,2816904,2817264,2817562,2818004	2814377,2814617,2814958,2815172,2815588,2816047,2816317,2816660,2817053,2817422,2817813,2820222	Flagellar Associated Protein, found in the flagellar proteome; Similar to cyclic nucleotide dependent protein kinase
chr16	2820244	2825589	2820970	2825224	-	Cre16.g663250.t1.1	Cre16.g663250.t1.1		2825402,2825121,2824156,2823798,2822746,2822317,2821938,2820244	2825589,2825289,2825037,2823952,2823576,2822562,2822077,2821703	
chr16	2820244	2825539	2820970	2825224	-	Cre16.g663250.t2.1	Cre16.g663250.t2.1		2825121,2824156,2823798,2822746,2822317,2821938,2820244	2825539,2825037,2823952,2823576,2822562,2822077,2821703	
chr16	2825824	2828139	2826569	2828014	-	Cre16.g663280.t1.2	Cre16.g663280.t1.2		2827576,2827165,2826688,2825824	2828139,2827332,2826828,2826626	
chr16	2828650	2830978	2828981	2829885	+	Cre16.g663315.t1.1	Cre16.g663315.t1.1		2828650,2829256,2829874	2829163,2829686,2830978	
chr16	2832330	2840267	2833851	2840061	-	CLPX	Cre16.g663350.t1.2		2839974,2839473,2839163,2838865,2838563,2838020,2837739,2837329,2837062,2836649,2836325,2835702,2835253,2834781,2834349,2832330	2840267,2839622,2839285,2838936,2838640,2838176,2837824,2837457,2837112,2836798,2836387,2835806,2835393,2834881,2834481,2833983	ClpX chaperone, Hsp100 family; probable subunit of ClpXP protease; probably mitochondrial (by homology)
chr16	2840640	2844309	2842098	2844223	-	LCI11A	Cre16.g663400.t1.2		2844079,2843671,2843006,2842595,2840640	2844309,2843831,2843489,2842875,2842381	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family; very similar to closely linked LCI11B and LCI11C
chr16	2840640	2845799	2842098	2844223	-	LCI11A	Cre16.g663400.t2.1		2845419,2844079,2843671,2843006,2842595,2840640	2845799,2844308,2843831,2843489,2842875,2842381	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family; very similar to closely linked LCI11B and LCI11C
chr16	2845854	2849699	2847173	2849438	-	LCI11B	Cre16.g663450.t1.2		2849306,2849105,2848922,2848760,2848135,2847724,2845854	2849699,2849197,2848953,2848801,2848618,2848004,2847510	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family; very similar to closely linked LCI11A and LCI11C
chr16	2850350	2853731	2850666	2852643	+	RPN10	Cre16.g663500.t1.2		2850350,2851303,2851750,2852180	2851026,2851389,2852000,2853731	26S proteasome regulatory complex, base subcomplex, non-ATPase regulatory RPN10 (subunit 4) (subunit S5A) (PSD4) (Multiubiquitin chain binding protein).
chr16	2859598	2861059	2860099	2860310	+	Cre16.g663551.t1.1	Cre16.g663551.t1.1		2859598	2861059	
chr16	2880856	2886459	2881949	2885033	+	PHT7	Cre16.g663600.t1.2		2880856,2881452,2882347,2883168,2883776,2884356,2884820	2881033,2882024,2882850,2883349,2884016,2884553,2886459	Sodium-dependent phosphate transporter, major facilitator superfamily.  Putative carbohydrate-transporter containing 8 transmembrane spanning domains, identified in Chlamydomonas reinhardtii C9 various conditions [Asamizu et al. (24) Phycologia 43(6): 7
chr16	2886462	2888565	2886770	2888347	-	TRS33	Cre16.g663650.t1.2		2888278,2887953,2887593,2887035,2886462	2888565,2888074,2887710,2887239,2886799	Expressed Protein. Conserved protein similar to TRS33, a component of the TRAPP complex, involved in ER to Golgi vesicle transport.
chr16	2888688	2893209	2888826	2891805	+	Cre16.g663700.t1.1	Cre16.g663700.t1.1		2888688,2889473,2889744,2890122,2890522,2890899,2891197,2891633	2889327,2889547,2889978,2890240,2890695,2890940,2891405,2893209	
chr16	2893268	2900462	2893783	2899932	+	Cre16.g663750.t1.1	Cre16.g663750.t1.1		2893268,2894110,2894608,2895116,2895680,2895949,2896362,2896669,2897232,2897799,2898303,2898662,2899114,2899572	2894002,2894473,2894880,2895489,2895759,2896043,2896535,2896995,2897432,2897899,2898425,2898796,2899359,2900462	
chr16	2900598	2901949	2900816	2901479	+	Cre16.g663776.t1.1	Cre16.g663776.t1.1		2900598,2900939,2901440	2900832,2901186,2901949	
chr16	2902059	2906469	2902124	2905591	+	CGL51	Cre16.g663800.t1.2		2902059,2902486,2902873,2903215,2904038,2904390,2904760,2905354	2902405,2902574,2902931,2903393,2904098,2904488,2904948,2906469	
chr16	2906521	2912513	2906855	2911602	+	SSS5	Cre16.g663850.t1.1		2906521,2907120,2907380,2907606,2907786,2908068,2908343,2908779,2909033,2909294,2909589,2909909,2910178,2910427,2910878,2911149,2911487	2906879,2907224,2907462,2907678,2907886,2908173,2908588,2908881,2909174,2909441,2909672,2910067,2910324,2910747,2911033,2911324,2912513	
chr16	2912532	2916277	2913194	2915964	-	Cre16.g663876.t1.1	Cre16.g663876.t1.1		2915801,2915619,2915398,2915196,2914573,2914071,2913760,2913487,2912532	2916277,2915695,2915473,2915315,2915024,2914329,2913974,2913609,2913275	
chr16	2916388	2919687	2916462	2918730	+	PBGD1	Cre16.g663900.t1.2		2916388,2916761,2917077,2917504,2918053,2918545	2916506,2916911,2917253,2917686,2918362,2919687	Porphobilinogen deaminase, chloroplast precursor; Hydroxymethylbilane synthase; Pre-uroporphyrinogen synthase; PBG; HMBS; HEM3; HEMC; Predicted chloroplast transit peptide 1-34 [PMID: 1986793; PMID: 8192681; PMID: 1584938]
chr16	2920033	2922957	2920888	2922839	-	ERG3	Cre16.g663950.t1.2		2922749,2922599,2921986,2921541,2921311,2920033	2922957,2922657,2922289,2921743,2921404,2921176	Characterized by Brumfield et al. 21 [PMID: 284111]; Delta7-sterol-C5-desaturase
chr16	2923058	2928792	2923271	2928173	+	HLM25	Cre16.g664000.t1.2		2923058,2923508,2923837,2924400,2924819,2925233,2925653,2925957,2926286,2926627,2926998,2927315,2927611,2928061	2923366,2923575,2924011,2924599,2924947,2925318,2925715,2926028,2926357,2926755,2927184,2927391,2927729,2928792	
chr16	2928928	2935816	2929255	2934756	+	Cre16.g664050.t1.2	Cre16.g664050.t1.2		2928928,2929567,2929706,2929888,2930463,2930865,2931196,2931663,2932250,2932670,2933039,2933407,2933845,2934311	2929489,2929617,2929789,2929941,2930554,2930920,2931344,2931824,2932389,2932808,2933173,2933616,2934098,2935816	
chr16	2928928	2935816	2929255	2934756	+	Cre16.g664050.t2.1	Cre16.g664050.t2.1		2928928,2929567,2929706,2929888,2930463,2930865,2931196,2931663,2932250,2932670,2933039,2933407,2933848,2934311	2929489,2929617,2929789,2929941,2930554,2930920,2931344,2931824,2932389,2932808,2933173,2933616,2934098,2935816	
chr16	2936788	2940737	2937096	2940294	-	Cre16.g664100.t1.1	Cre16.g664100.t1.1		2940171,2940055,2939887,2939340,2939025,2938787,2938436,2937805,2936788	2940737,2940102,2939965,2939814,2939250,2938891,2938516,2938298,2937679	
chr16	2942758	2953489	2942968	2952206	+	PDE18	Cre16.g664150.t1.1		2942758,2943483,2943783,2943960,2944286,2944531,2945040,2945540,2945815,2946158,2946411,2946608,2946804,2946980,2947155,2947386,2950027,2950547,2950881,2951176,2951553,2951786	2943076,2943561,2943832,2944124,2944394,2944757,2945173,2945597,2945936,2946267,2946432,2946652,2946846,2947030,2947220,2949265,2950417,2950731,2951033,2951290,2951645,2953489	Homolog of calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain.
chr16	2953492	2961087	2953886	2961062	-	PDE33	Cre16.g664200.t1.1		2960981,2960713,2960557,2959974,2959781,2959447,2959148,2958808,2958549,2958119,2957935,2957738,2957536,2957374,2956302,2956011,2955468,2955169,2954883,2954628,2954276,2953492	2961087,2960814,2960586,2960138,2959889,2959673,2959278,2958862,2958670,2958261,2957959,2957782,2957578,2957424,2957234,2956135,2955858,2955338,2955041,2954742,2954366,2954188	Metal-dependent phosphohydrolase
chr16	2953492	2961087	2953886	2961062	-	PDE33	Cre16.g664200.t2.1		2960981,2960713,2960557,2959974,2959781,2959447,2959148,2958808,2958549,2958143,2957935,2957738,2957536,2957374,2956302,2956011,2955468,2955169,2954883,2954628,2954276,2953492	2961087,2960814,2960586,2960138,2959889,2959673,2959278,2958862,2958670,2958261,2957959,2957782,2957578,2957424,2957234,2956135,2955858,2955338,2955041,2954742,2954366,2954188	Metal-dependent phosphohydrolase
chr16	2961143	2963947	2961474	2963920	-	OASTL2	Cre16.g664250.t1.2		2963848,2963629,2963212,2962800,2962359,2962025,2961791,2961143	2963947,2963757,2963367,2963034,2962519,2962166,2961891,2961627	O-acetylserine (thiol)-lyase, O-acetylserine sulfhydrylase
chr16	6030	8255	7071	7331	-	Cre16.g664251.t1.1	Cre16.g664251.t1.1		7899,7161,6030	8255,7539,7078	
chr16	2964108	2980709	2964711	2980278	+	POLQ1	Cre16.g664301.t1.1		2964108,2964400,2964581,2968776,2969084,2969339,2969592,2969931,2970198,2970485,2970845,2971154,2971465,2971753,2971944,2972268,2972619,2972809,2973039,2973377,2973603,2974601,2976829,2977037,2977282,2977549,2977887,2978274,2978714,2979081,2979417,2979669,2980017	2964331,2964491,2968629,2968896,2969230,2969445,2969789,2970041,2970350,2970713,2971013,2971334,2971610,2971840,2972053,2972478,2972697,2972867,2973219,2973480,2974446,2976690,2976927,2977159,2977377,2977746,2978134,2978543,2978867,2979248,2979530,2979797,2980709	Homologous to eukaryotic DNA polymerase theta.  Involved in DNA repair; a class A polymerase.
chr16	2980711	2984546	2981357	2984500	-	Cre16.g664350.t1.2	Cre16.g664350.t1.2		2984253,2984013,2983635,2983095,2982632,2981888,2980711	2984546,2984143,2983693,2983200,2982835,2982124,2981666	
chr16	2984638	2986539	2984825	2986089	+	Cre16.g664400.t1.2	Cre16.g664400.t1.2		2984638,2985014,2985650,2986019	2984936,2985109,2985783,2986539	
chr16	2986542	2991137	2987055	2990978	-	Cre16.g664450.t1.1	Cre16.g664450.t1.1		2990891,2990666,2990440,2990219,2989959,2989562,2988820,2988518,2988137,2987396,2986542	2991137,2990797,2990514,2990308,2990039,2989801,2989132,2988622,2988408,2987993,2987282	
chr16	2991508	2994142	2991931	2993543	+	BBS3	Cre16.g664500.t1.2		2991508,2992130,2992341,2992682,2993082,2993429	2991982,2992192,2992408,2992804,2993205,2994142	Flagellar ARF-like GTPase, most similar to mammalian ARL6; similar to mammalian BBS3 that, when mutated, causes Bardet-Biedl syndrome 3; ADP-ribosylation factor 1
chr16	2991619	2994142	2991931	2993543	+	BBS3	Cre16.g664500.t2.1		2991619,2992130,2992341,2992682,2993082,2993429	2991982,2992192,2992408,2992804,2993205,2994142	Flagellar ARF-like GTPase, most similar to mammalian ARL6; similar to mammalian BBS3 that, when mutated, causes Bardet-Biedl syndrome 3; ADP-ribosylation factor 1
chr16	2994585	2999677	2994996	2999474	-	SHMT1	Cre16.g664550.t1.2		2999414,2999307,2999170,2998980,2998684,2998395,2997999,2997634,2997333,2996996,2996617,2996197,2995883,2995514,2995260,2994585	2999677,2999336,2999235,2999066,2998836,2998481,2998124,2997730,2997391,2997116,2996738,2996283,2995990,2995675,2995355,2995098	Serine hydroxymethyltransferase (gi:17066746, high light-inducible; Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr16	3000326	3002107	3000850	3001896	-	NUOB16	Cre16.g664600.t1.2		3001857,3001639,3001535,3001403,3001110,3000326	3002107,3001788,3001560,3001474,3001164,3000937	NADH:ubiquinone oxidoreductase (Complex I) subunit, homolog to bovine B16.6. gi 34334020 gb AAQ64637.1  [PMID: 15710684; PMID: 15450959]
chr16	3002648	3004149	3002860	3003595	+	Cre16.g664650.t1.2	Cre16.g664650.t1.2		3002648,3003179,3003472	3002882,3003243,3004149	
chr16	3004151	3006767	3004490	3006651	-	SHY1	Cre16.g664700.t1.2		3006408,3006015,3005658,3005131,3004151	3006767,3006163,3005720,3005482,3004850	Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase. Probable mitochondrial inner membrane protein required for normal respiration, possible chaperone involved in assembly of cytochrome c oxidase; similar to SURF1 from mammals, chickens, and D. melanogaster; similar to Shy1p from Saccharomyces cerevisiae
chr16	3006866	3011797	3007030	3011675	+	Cre16.g664750.t1.1	Cre16.g664750.t1.1		3006866,3007468,3008212,3008437,3008816,3009367,3009632,3009949,3010428,3010947,3011506	3007111,3008094,3008289,3008625,3009211,3009476,3009704,3010149,3010753,3011399,3011797	
chr16	3011846	3014587	3011917	3013818	+	RBL4	Cre16.g664801.t1.1		3011846,3012335,3012731,3013085,3013354,3013680	3012146,3012470,3012885,3013159,3013457,3014587	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted
chr16	3014591	3021484	3015842	3021260	-	Cre16.g664850.t1.1	Cre16.g664850.t1.1		3020861,3020614,3020102,3019210,3018862,3018291,3017894,3017570,3017159,3016646,3016417,3014591	3021484,3020720,3020413,3019864,3018939,3018590,3018000,3017645,3017248,3016929,3016476,3016239	
chr16	3026106	3033337	3026291	3032904	+	Cre16.g664950.t1.1	Cre16.g664950.t1.1		3026106,3026447,3026648,3028584,3028924,3029231,3029526,3032443	3026342,3026512,3028433,3028726,3029054,3029318,3032289,3033337	
chr16	3034252	3035247	3034738	3035162	-	UMP1	Cre16.g665000.t1.2		3034252	3035247	UMP1 is a short-lived chaperone present in the precursor form of the 2S proteasome and absent in the mature complex. UMP1 is required for the correct assembly and enzymatic activation of the proteasome. UMP1 seems to be degraded rapidly
chr16	3035376	3046337	3035604	3045579	+	CAV2	Cre16.g665050.t1.2		3035376,3035838,3036214,3036442,3036825,3037007,3037167,3037498,3037861,3038462,3038860,3039300,3039782,3040035,3042019,3042462,3042866,3043288,3043675,3043986,3044285,3044686,3045069	3035757,3036056,3036295,3036575,3036870,3037085,3037294,3037693,3038224,3038724,3039144,3039656,3039872,3041827,3042225,3042696,3043123,3043527,3043757,3044102,3044506,3044812,3046337	Voltage-dependent 4-domain calcium channel, alpha subunit
chr16	3046346	3062155	3047322	3062004	-	CAV3	Cre16.g665100.t1.1		3061917,3061604,3061032,3060809,3060455,3060276,3060055,3059703,3059415,3059207,3059042,3058867,3058421,3058012,3057698,3057459,3056877,3056412,3054096,3053608,3053251,3052482,3051987,3051706,3051479,3051304,3050854,3050451,3050231,3049998,3049836,3049263,3048876,3046346	3062155,3061855,3061080,3060863,3060533,3060317,3060137,3059833,3059512,3059262,3059063,3058905,3058768,3058295,3057929,3057511,3057233,3056500,3056255,3053857,3053441,3052570,3052078,3051806,3051551,3051364,3051108,3050690,3050313,3050103,3049846,3049575,3049103,3048666	Voltage-dependent 4-domain calcium channel, alpha subunit
chr16	3063831	3067495	3064239	3067322	-	Cre16.g665200.t1.2	Cre16.g665200.t1.2		3067204,3066843,3066583,3066431,3066165,3065871,3065440,3065226,3064895,3064498,3063831	3067495,3067064,3066686,3066475,3066227,3065971,3065584,3065349,3065082,3064668,3064341	
chr16	3067617	3070003	3067998	3069973	-	APE1	Cre16.g665250.t1.2		3069869,3069622,3069336,3068984,3068663,3068160,3067617	3070003,3069724,3069494,3069087,3068760,3068371,3068049	Homolog of Arabidopsis APE1 (Acclimation of Photosynthesis to Environment) that is required for acclimation of photosynthesis to various light intensity; TEF6, found in thylakoid proteome by Hippler and co-workers
chr16	3070096	3074712	3070244	3074090	+	Cre16.g665300.t1.2	Cre16.g665300.t1.2		3070096,3070517,3070740,3071076,3071391,3071648,3071921,3072269,3072574,3072890,3073440	3070262,3070633,3070907,3071192,3071517,3071769,3072139,3072399,3072720,3073227,3074712	
chr16	3074730	3076685	3075677	3076534	-	Cre16.g665328.t1.1	Cre16.g665328.t1.1		3076431,3074730	3076685,3075907	
chr16	3079320	3082215	3079370	3081639	+	Cre16.g665364.t1.1	Cre16.g665364.t1.1		3079320,3079964,3080101,3080296,3080489,3080889,3081419,3081628	3079888,3080031,3080212,3080386,3080622,3081230,3081540,3082215	
chr16	3084826	3086575	3085484	3086449	-	SMP9	Cre16.g665400.t1.2		3086432,3086283,3085963,3084826	3086575,3086359,3086157,3085540	
chr16	3086726	3105581	3086977	3104768	+	FAP48	Cre16.g665450.t1.1		3086726,3087126,3087420,3087793,3088071,3088361,3088735,3088970,3089254,3089805,3089955,3090193,3090362,3090678,3090830,3091120,3091378,3091666,3091922,3092138,3092570,3092980,3093275,3093529,3093896,3094155,3094489,3094790,3095130,3095409,3095715,3095994,3096341,3096854,3097182,3097387,3097763,3098194,3098423,3098741,3098959,3099255,3099741,3100027,3100331,3100606,3100863,3101180,3101564,3101830,3102029,3102402,3102686,3102946,3103496,3103755,3103990,3104220,3104467	3087025,3087200,3087631,3087943,3088196,3088567,3088857,3089134,3089652,3089838,3090070,3090243,3090577,3090743,3090975,3091261,3091509,3091798,3092001,3092368,3092890,3093111,3093354,3093753,3094011,3094338,3094636,3095002,3095252,3095579,3095817,3096214,3096706,3097031,3097269,3097615,3098041,3098291,3098609,3098816,3099128,3099606,3099901,3100192,3100428,3100695,3101047,3101366,3101713,3101877,3102238,3102539,3102824,3103353,3103636,3103856,3104078,3104326,3105581	ryanodine receptor calcium ion channel RIR-CaC; Inositol 1,4,5-trisphosphate receptor type 1 (Type 1 InsP3 receptor) (IP3 receptor) (InsP3R1) (IP3R); found in flagellar proteome as FAP48 (PMID: 15998802)
chr16	3108920	3110405	3109690	3110282	-	Cre16.g665500.t1.2	Cre16.g665500.t1.2		3108920	3110405	
chr16	3110526	3113837	3110790	3113205	+	Cre16.g665550.t1.2	Cre16.g665550.t1.2		3110526,3111128,3111525,3111725,3112138,3112622,3112905	3110938,3111327,3111564,3111837,3112426,3112734,3113837	
chr16	3110526	3113686	3110790	3113205	+	Cre16.g665550.t2.1	Cre16.g665550.t2.1		3110526,3111128,3111525,3111725,3112138,3112622,3112905	3110938,3111327,3111564,3111837,3112426,3112734,3113686	
chr16	3113875	3118395	3114321	3118176	-	CSK7	Cre16.g665600.t1.2		3118053,3117455,3117178,3116294,3115932,3115248,3114712,3113875	3118395,3117628,3117255,3116391,3116061,3115433,3114861,3114402	
chr16	3121946	3127527	3122193	3126894	+	Cre16.g665650.t1.1	Cre16.g665650.t1.1		3121946,3122175,3122383,3122871,3123282,3123570,3123788,3124169,3124501,3124758,3125075,3125375,3125791,3126061,3126449,3126756	3122031,3122304,3122505,3123008,3123347,3123640,3123929,3124339,3124585,3124870,3125139,3125471,3125871,3126177,3126535,3127527	
chr16	3127530	3130942	3128771	3130893	-	Cre16.g665700.t1.2	Cre16.g665700.t1.2		3130466,3130190,3129876,3129652,3129433,3129072,3127530	3130942,3130387,3130128,3129800,3129585,3129223,3128855	
chr16	3131310	3134875	3132511	3134598	-	RAA2	Cre16.g665750.t1.2		3134538,3134237,3133698,3133445,3133011,3131310	3134875,3134386,3133856,3133535,3133197,3132866	Necessary for trans-splicing of psaA mRNA; similar to TruB family pseudouridylate synthases (pseudouridine synthases)
chr16	3135053	3140817	3135163	3140125	+	SS4	Cre16.g665800.t1.2		3135053,3135401,3135680,3135871,3136521,3136883,3137137,3137360,3137649,3137923,3138329,3138561,3138847,3139126,3139326,3139618,3140070	3135286,3135517,3135748,3136047,3136701,3136990,3137182,3137479,3137692,3138044,3138439,3138698,3138988,3139189,3139425,3139856,3140817	ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase; catalyses the transfer of the glucosyl moiety of the ADP-glc to the non-reducing end of a pre-existing alpha 1,4 linked chain; (AAC17971)
chr16	3140820	3144875	3141725	3144707	-	FAP248	Cre16.g665850.t1.1		3144671,3144426,3143803,3143447,3143258,3142984,3142625,3142193,3140820	3144875,3144543,3144029,3143659,3143316,3143087,3142734,3142393,3141932	
chr16	3144930	3151686	3145830	3151512	-	Cre16.g665900.t1.1	Cre16.g665900.t1.1		3151462,3151308,3150893,3149928,3149555,3149063,3148795,3147910,3147710,3147343,3146926,3146788,3146360,3144930	3151686,3151374,3151213,3150691,3149746,3149299,3148885,3148588,3147774,3147597,3147013,3146828,3146611,3146181	
chr16	3151846	3158337	3151937	3158055	+	MCM8	Cre16.g665950.t1.1		3151846,3152380,3152720,3153005,3153284,3153631,3153997,3154340,3154938,3155310,3155551,3155835,3156111,3156432,3156895,3157067,3157310,3157612,3157960	3152219,3152566,3152869,3153084,3153434,3153815,3154101,3154591,3155015,3155374,3155626,3155954,3156222,3156769,3156951,3157153,3157390,3157792,3158337	homologous to MCM8 DNA replication protein
chr16	3158396	3162690	3158507	3162209	+	Cre16.g666000.t1.1	Cre16.g666000.t1.1		3158396,3158803,3159213,3159527,3159916,3160757,3161222,3161432,3161748,3162113	3158672,3159059,3159263,3159728,3160625,3160802,3161266,3161539,3161864,3162690	
chr16	3163749	3167375	3164256	3167286	-	CPLD49	Cre16.g666050.t1.2		3166962,3166320,3165958,3165568,3165070,3164594,3163749	3167375,3166465,3166118,3165750,3165314,3164764,3164373	Conserved in the Plant Lineage and Diatoms
chr16	3167467	3170727	3167586	3169769	+	Cre16.g666100.t1.2	Cre16.g666100.t1.2		3167467,3167717,3168061,3168359,3168606,3168865,3169235	3167616,3167880,3168172,3168460,3168718,3169057,3170727	
chr16	3170748	3174270	3171212	3174123	-	DCC2	Cre16.g666150.t1.2		3174104,3173921,3173708,3173172,3172737,3172385,3171696,3170748	3174270,3174011,3173855,3173636,3172934,3172545,3171975,3171509	Flagellar outer dynein arm-docking complex subunit 2 (ODA-DC2); Mr 70000
chr16	3174386	3178809	3174831	3178206	+	Cre16.g666200.t1.2	Cre16.g666200.t1.2		3174386,3175023,3175214,3175377,3175638,3175925,3176191,3176394,3176642,3176860,3177124,3177386,3177914	3174933,3175148,3175287,3175446,3175765,3176019,3176257,3176523,3176731,3176985,3177254,3177766,3178809	Casein kinase-related Ser/Thr kinase.  Putative paralog of MUT9 (AAL6199), silencing related kinase SRK, potentially involved in transcriptional gene silencing
chr16	3181660	3185917	3183685	3185729	-	Cre16.g666250.t1.2	Cre16.g666250.t1.2		3185686,3185217,3185019,3184798,3184647,3181660	3185917,3185445,3185088,3184858,3184693,3184525	UAA transporter family
chr16	3181660	3185917	3183685	3185729	-	Cre16.g666250.t2.1	Cre16.g666250.t2.1		3185686,3185217,3185019,3184798,3184647,3184279,3181660	3185917,3185445,3185088,3184858,3184693,3184525,3184113	UAA transporter family
chr16	3188757	3195335	3189630	3195162	-	Cre16.g666300.t1.1	Cre16.g666300.t1.1		3195105,3193170,3190993,3190677,3190351,3190010,3188757	3195335,3194826,3193058,3190871,3190549,3190216,3189860	
chr16	3195436	3196549	3195592	3196202	+	RPS30	Cre16.g666301.t1.2		3195436,3195663,3196155	3195596,3195800,3196549	Cytosolic 40S small ribosomal subunit protein S30
chr16	3196907	3198987	3197204	3198708	+	Cre16.g666302.t1.2	Cre16.g666302.t1.2		3196907,3197801,3198402	3197228,3197998,3198987	
chr16	3200562	3212685	3202209	3212404	-	RFS1	Cre16.g666334.t1.1		3212342,3211827,3211277,3210889,3210475,3206628,3206359,3205995,3205266,3204925,3204646,3204417,3204129,3203794,3203471,3203064,3202669,3200562	3212685,3211945,3211548,3211014,3210668,3206814,3206505,3206175,3205835,3205096,3204839,3204530,3204258,3203973,3203645,3203333,3202908,3202431	EC 2.4.1.82; GH36C family glycoside hydrolase, putative galactinol--sucrose galactosyltransferase = raffinose synthase = 1-alpha-D-galactosyl-myo-inositol:sucrose 6-a-D-galactosyltransferase; this gene contains in its long 5th intron a gene on the other strand, MAD1; this organization is conserved in Chlorophyceae and Trebouxiophyceae
chr16	3200562	3206995	3202209	3206871	-	RFS1	Cre16.g666334.t2.1		3206857,3206628,3206359,3205995,3205266,3204925,3204646,3204417,3204129,3203794,3203471,3203064,3202669,3200562	3206995,3206814,3206505,3206175,3205835,3205096,3204839,3204530,3204258,3203973,3203645,3203333,3202908,3202431	EC 2.4.1.82; GH36C family glycoside hydrolase, putative galactinol--sucrose galactosyltransferase = raffinose synthase = 1-alpha-D-galactosyl-myo-inositol:sucrose 6-a-D-galactosyltransferase; this gene contains in its long 5th intron a gene on the other strand, MAD1; this organization is conserved in Chlorophyceae and Trebouxiophyceae
chr16	3210280	3212685	3210312	3212404	-	RFS1	Cre16.g666334.t3.1		3212342,3211827,3211277,3210889,3210475,3210280	3212685,3211945,3211548,3211014,3210668,3210334	EC 2.4.1.82; GH36C family glycoside hydrolase, putative galactinol--sucrose galactosyltransferase = raffinose synthase = 1-alpha-D-galactosyl-myo-inositol:sucrose 6-a-D-galactosyltransferase; this gene contains in its long 5th intron a gene on the other strand, MAD1; this organization is conserved in Chlorophyceae and Trebouxiophyceae
chr16	3207096	3210277	3207402	3210059	+	MAD1	Cre16.g666400.t1.1		3207096,3207532,3207745,3208092,3208719,3209534,3209812,3210059	3207456,3207666,3207960,3208640,3209406,3209709,3209952,3210277	lies in the Fifth intron of RFS1, on the other strand; this organization is conserved in Chlorophyceae and Trebouxiophyceae
chr16	3212956	3217379	3213149	3216763	+	BBS8	Cre16.g666500.t1.2		3212956,3213385,3213581,3213800,3214363,3214632,3215029,3215510,3215755,3216175,3216430,3216676	3213311,3213456,3213676,3214068,3214480,3214874,3215249,3215594,3215889,3216275,3216526,3217379	Tetratricopeptide repeat domain protein, similar to human Bardet Biedl Syndrome 8; belongs to linker subcomplex of flagellar BBsome involved in targeting membrane proteins to the flagellum
chr16	3217434	3222938	3218958	3222912	-	SOUL3	Cre16.g666550.t1.1		3222660,3222049,3221839,3221392,3221121,3220922,3220407,3220103,3219707,3219428,3219186,3217434	3222938,3222199,3221886,3221471,3221159,3220978,3220596,3220179,3219840,3219473,3219273,3219062	Conserved expressed SOUL heme binding protein; N-terminal (possibly lacking in alternatively spliced form) similar to unknown cyanobacterial protein; C-terminus similar to SOUL protein, putative heme-binding domain
chr16	3223086	3236397	3223484	3235643	+	Cre16.g666576.t1.1	Cre16.g666576.t1.1		3223086,3223478,3223561,3225690,3226848,3231420,3231668,3232786,3233112,3233447,3234944,3235211,3235556	3223369,3223489,3225442,3226679,3227255,3231466,3232632,3232934,3233280,3233538,3235042,3235294,3236397	
chr16	3243056	3249235	3243511	3249077	-	Cre16.g666602.t1.1	Cre16.g666602.t1.1		3248156,3244755,3243734,3243056	3249235,3248076,3244153,3243591	
chr16	3304286	3313405	3304746	3312847	-	Cre16.g666627.t1.1	Cre16.g666627.t1.1		3311218,3309527,3305625,3304968,3304286	3313405,3311108,3309470,3305393,3304826	
chr16	3316696	3318705	3317242	3318049	-	Cre16.g666653.t1.2	Cre16.g666653.t1.2		3318541,3317799,3316696	3318705,3318050,3317310	
chr16	3337226	3341567	3337703	3340167	+	Cre16.g666677.t1.1	Cre16.g666677.t1.1		3337226,3337900	3337710,3341567	
chr16	3342526	3343907	3342603	3343853	+	Cre16.g666700.t1.2	Cre16.g666700.t1.2		3342526,3343767	3343462,3343907	
chr16	4540994	4543869	4542426	4543135	-	Cre16.g667050.t1.1	Cre16.g667050.t1.1		4543038,4540994	4543869,4542497	
chr16	3349036	3350654	3349149	3350266	+	Cre16.g667057.t1.1	Cre16.g667057.t1.1		3349036,3349817	3349270,3350654	
chr16	4537370	4540992	4537424	4539956	+	LMR3	Cre16.g667100.t1.2		4537370,4537799,4538142,4538434,4538860,4539275,4539533,4539876	4537619,4537840,4538219,4538596,4539062,4539348,4539585,4540992	protein of unknown function, contains LysM-domain which is found in a variety of enzymes involved in bacterial cell wall degradation; the domain may have a general peptidoglycan binding function
chr16	4535234	4537269	4535594	4537176	-	Cre16.g667150.t1.2	Cre16.g667150.t1.2		4537107,4536739,4536362,4535234	4537269,4536867,4536498,4535940	
chr16	4532919	4535179	4533047	4535136	-	Cre16.g667200.t1.2	Cre16.g667200.t1.2		4533757,4532919	4535179,4533435	
chr16	4530311	4532917	4530631	4531530	+	Cre16.g667250.t1.2	Cre16.g667250.t1.2		4530311,4531257	4530640,4532917	
chr16	4521975	4526139	4524513	4525222	-	Cre16.g667300.t1.1	Cre16.g667300.t1.1		4525602,4525125,4521975	4526139,4525556,4524584	
chr16	4496099	4515170	4496391	4513604	+	CAV6	Cre16.g667350.t1.1		4496099,4496677,4497614,4497960,4498501,4502534,4503221,4503813,4504301,4504820,4505175,4505500,4506155,4506675,4507044,4507647,4511123,4511479,4511996	4496521,4497411,4497666,4498127,4502305,4502810,4503488,4504006,4504416,4504955,4505304,4505703,4506391,4506794,4507346,4507789,4511237,4511643,4515170	Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582)
chr16	4515518	4519978	4516479	4517940	-	Cre16.g667353.t1.1	Cre16.g667353.t1.1		4519245,4516766,4515518	4519978,4517950,4516529	
chr16	4520033	4521908	4521208	4521460	-	Cre16.g667354.t1.1	Cre16.g667354.t1.1		4521342,4520033	4521908,4521258	
chr16	3351106	3352454	3351223	3351815	+	Cre16.g667413.t1.1	Cre16.g667413.t1.1		3351106	3352454	
chr16	4480634	4484032	4481130	4483134	+	TLP2	Cre16.g667450.t1.2		4480634,4481076,4481387,4481730,4482029	4480904,4481167,4481576,4481873,4484032	tubby-like protein 2. Transcript upregulated during flagellar regeneration [PMID: 15738400].
chr16	4484079	4495237	4485187	4494102	+	TLP3	Cre16.g667451.t1.1		4484079,4485019,4485473,4486577,4487111,4487635,4488089,4488500,4488813,4489088,4491488,4492175,4492374,4492614,4493162,4493703	4484316,4485317,4486230,4486745,4487370,4487838,4488274,4488562,4488911,4491199,4491724,4492261,4492462,4492866,4493329,4495237	Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582)
chr16	4349919	4353303	4350567	4353024	+	Cre16.g667550.t1.2	Cre16.g667550.t1.2		4349919,4350782,4351356,4351629	4350579,4350856,4351493,4353303	
chr16	4322800	4334885	4323246	4334732	-	Cre16.g667700.t1.2	Cre16.g667700.t1.2		4334642,4334260,4333574,4333071,4332491,4332141,4330964,4330553,4328234,4327795,4327305,4326968,4326635,4325934,4322800	4334885,4334366,4333712,4333189,4332609,4332193,4331112,4330678,4328381,4327908,4327442,4327013,4326758,4326051,4325721	
chr16	4347409	4349540	4348766	4349034	+	Cre16.g667701.t1.1	Cre16.g667701.t1.1		4347409,4348725	4348169,4349540	
chr16	4319500	4322775	4319857	4322738	-	Cre16.g667729.t1.2	Cre16.g667729.t1.2		4322276,4321290,4319500	4322775,4321945,4320932	
chr16	4319500	4322745	4319857	4322591	-	Cre16.g667729.t2.1	Cre16.g667729.t2.1		4322276,4321290,4319500	4322745,4321945,4320932	
chr16	4315949	4319497	4316114	4318650	+	RPB7	Cre16.g667750.t1.2		4315949,4316550,4317310,4317913,4318221,4318590	4316213,4316618,4317426,4317963,4318355,4319497	
chr16	3356696	3358487	3356739	3357966	+	Cre16.g667769.t1.1	Cre16.g667769.t1.1		3356696,3357577	3356941,3358487	
chr16	4311456	4315805	4311745	4315597	-	Cre16.g667800.t1.2	Cre16.g667800.t1.2		4315411,4315125,4314613,4314059,4313746,4313329,4312869,4312132,4311456	4315805,4315223,4314668,4314270,4313885,4313448,4313111,4312584,4311913	
chr16	4307717	4309290	4307769	4308653	+	NSG10	Cre16.g667850.t1.1		4307717,4308046,4308519	4307948,4308257,4309290	dUTPase; identified by Abe et al. 24 (PMID:15459796) as NSG10, a gene expressed during nitrogen-starved gametogenesis.
chr16	4295135	4306175	4296962	4305402	-	Cre16.g667900.t1.1	Cre16.g667900.t1.1		4305872,4303074,4301950,4301641,4301088,4300628,4300347,4299843,4295135	4306175,4305502,4302845,4301734,4301180,4300777,4300391,4299972,4299670	contains two copies of AP2 DNA-binding domain
chr16	4292776	4294985	4293302	4294685	-	Cre16.g667950.t1.2	Cre16.g667950.t1.2		4294542,4294286,4294038,4293597,4292776	4294985,4294418,4294134,4293790,4293434	
chr16	4288846	4292077	4288940	4291089	+	Cre16.g668000.t1.2	Cre16.g668000.t1.2		4288846,4289070,4289260,4289409,4289734,4290222,4291089	4288984,4289131,4289281,4289514,4289838,4290719,4292077	
chr16	4283736	4288773	4283865	4287730	+	Cre16.g668050.t1.1	Cre16.g668050.t1.1		4283736,4284270,4284457,4284783,4285501,4285947,4286353,4287183,4287563	4284118,4284352,4284529,4284892,4285639,4286096,4286513,4287258,4288773	
chr16	4283736	4288773	4283865	4287730	+	Cre16.g668050.t2.1	Cre16.g668050.t2.1		4283736,4284270,4284457,4284783,4285501,4285947,4286353,4287186,4287563	4284118,4284352,4284529,4284892,4285639,4286096,4286513,4287258,4288773	
chr16	4279660	4283585	4280174	4283347	-	Cre16.g668100.t1.2	Cre16.g668100.t1.2		4282756,4282274,4281929,4281575,4281078,4280462,4279660	4283585,4282412,4282113,4281661,4281132,4280540,4280268	
chr16	3382179	3388090	3382259	3387807	+	Cre16.g668125.t1.1	Cre16.g668125.t1.1		3382179,3383692,3384310,3385090,3386131,3386972,3387801	3383586,3384200,3384403,3385899,3386556,3387480,3388090	
chr16	4273863	4279605	4275062	4279504	-	Cre16.g668150.t1.2	Cre16.g668150.t1.2		4279381,4279206,4278637,4278423,4278126,4277518,4277068,4276510,4275810,4273863	4279605,4279296,4278734,4278515,4278239,4277878,4277312,4276858,4276006,4275296	
chr16	4271556	4273849	4271818	4273265	+	Cre16.g668200.t1.1	Cre16.g668200.t1.1		4271556,4272282,4272742,4273041	4272094,4272443,4272823,4273849	PHD-type zinc-finger protein that may bind methylated H3.  Homology to the Inhibitor of Growth (ING) protein group.  ChromoDB INGF341
chr16	4259200	4271425	4259826	4271316	-	Cre16.g668250.t1.1	Cre16.g668250.t1.1		4270989,4270487,4270026,4269169,4266542,4264516,4263626,4261830,4261422,4261030,4260740,4259200	4271425,4270576,4270100,4269267,4268824,4266312,4264329,4263347,4261520,4261109,4260816,4260540	
chr16	4244366	4257547	4245370	4255139	+	Cre16.g668300.t1.1	Cre16.g668300.t1.1		4244366,4245285,4251700,4253579	4244978,4251517,4253346,4257547	
chr16	4241812	4244319	4242040	4243651	+	Cre16.g668350.t1.2	Cre16.g668350.t1.2		4241812,4242329,4242806	4242211,4242428,4244319	
chr16	4234336	4241705	4235159	4241646	-	Cre16.g668400.t1.2	Cre16.g668400.t1.2		4241424,4240992,4240575,4240174,4239404,4239124,4238481,4238032,4237520,4237126,4236477,4236029,4234336	4241705,4241197,4240630,4240273,4239560,4239147,4238652,4238139,4237716,4237197,4236902,4236142,4235747	
chr16	4231746	4234295	4231823	4233904	+	Cre16.g668450.t1.1	Cre16.g668450.t1.1		4231746,4232979,4233378	4232783,4233154,4234295	
chr16	4229166	4231677	4230041	4231602	+	Cre16.g668451.t1.2	Cre16.g668451.t1.2		4229166,4230004,4230345,4230933,4231155	4229863,4230081,4230640,4231001,4231677	
chr16	4229286	4231677	4230056	4231602	+	Cre16.g668451.t2.1	Cre16.g668451.t2.1		4229286,4230345,4230933,4231155	4230081,4230640,4231001,4231677	
chr16	3388574	3389738	3389192	3389589	-	Cre16.g668481.t1.1	Cre16.g668481.t1.1		3388574	3389738	
chr16	4222864	4228565	4224110	4227771	-	Cre16.g668500.t1.1	Cre16.g668500.t1.1		4227735,4227160,4222864	4228565,4227273,4226945	
chr16	4227501	4228965	4228568	4228870	-	Cre16.g668502.t1.1	Cre16.g668502.t1.1		4228760,4227501	4228965,4228662	
chr16	4214916	4220183	4214979	4219278	+	Cre16.g668550.t1.2	Cre16.g668550.t1.2		4214916,4215186,4215540,4216582,4216873,4217225,4217561,4217986,4218619,4218966	4215108,4215269,4216426,4216681,4216980,4217342,4217673,4218216,4218723,4220183	
chr16	4220246	4222567	4220596	4221670	+	Cre16.g668552.t1.1	Cre16.g668552.t1.1		4220246,4221670	4220953,4222567	
chr16	4210816	4214869	4211160	4214311	+	Cre16.g668600.t1.2	Cre16.g668600.t1.2		4210816,4211466,4211876,4212433,4212756,4213081,4213352,4213780,4214176	4211245,4211592,4211990,4212482,4212812,4213142,4213579,4213889,4214869	
chr16	4206867	4210715	4207117	4210508	-	Cre16.g668650.t1.1	Cre16.g668650.t1.1		4210247,4208611,4208278,4207794,4206867	4210715,4209862,4208366,4207904,4207660	
chr16	4199136	4206852	4199187	4205823	+	Cre16.g668700.t1.2	Cre16.g668700.t1.2		4199136,4199667,4199997,4200311,4200531,4200767,4201011,4201410,4201875,4202136,4202643,4203019,4203841,4204147,4204530,4204959,4205250,4205504,4205806	4199275,4199771,4200101,4200351,4200564,4200862,4201190,4201604,4201991,4202231,4202738,4203572,4203949,4204311,4204709,4205114,4205303,4205608,4206852	
chr16	4182786	4198823	4182962	4198543	+	Cre16.g668750.t1.1	Cre16.g668750.t1.1		4182786,4183412,4183970,4184390,4184685,4184993,4185256,4185630,4186428,4186608,4188420,4188871,4189725,4190796,4191169,4191470,4192472,4192846,4193186,4193478,4193777,4194132,4194500,4194832,4195032,4195259,4195535,4195855	4183324,4183727,4184160,4184540,4184873,4185106,4185539,4186335,4186491,4188326,4188742,4189605,4190624,4190981,4191309,4192338,4192729,4193068,4193313,4193663,4193990,4194364,4194653,4194933,4195130,4195375,4195711,4198823	
chr16	4174763	4182642	4175079	4182504	-	MTA4	Cre16.g668800.t1.1		4182434,4182089,4181722,4181374,4181093,4180823,4180458,4180072,4179413,4179033,4178667,4178283,4177900,4177441,4177155,4176779,4176510,4176131,4175711,4174763	4182642,4182234,4181798,4181512,4181204,4180871,4180606,4180242,4179577,4179172,4178718,4178445,4178041,4177611,4177200,4176954,4176567,4176257,4175909,4175370	Unknown protein; a pseudo-gene copy resides in the A region of the mt+ locus [PMID: 11805055]. MTA4 was identified in the genome sequence after publication; independent cDNA sequence, see AY596304.
chr16	3394712	3398658	3397316	3398571	-	Cre16.g668837.t1.1	Cre16.g668837.t1.1		3398323,3397443,3394712	3398658,3398218,3397345	
chr16	4170696	4174100	4171705	4173445	+	MTA2	Cre16.g668850.t1.1		4170696,4171666,4171784,4172266,4172601	4171488,4171710,4171950,4172431,4174100	Hydroxyproline-rich glycoprotein, putative component of the zygote ECM; contains PPSPX repeats, described in PMID: 11258910. This gene is called A2 in some publications. The mRNA is gamete-specific; there is no protein localization data. A pseudogene copy resides in the mt+ locus [PMID: 11805055]. Independently sequenced as AF309495.
chr16	4168065	4170253	4169198	4170045	-	MTA3	Cre16.g668900.t1.1		4169700,4168065	4170253,4169354	unknown protein; a pseudo-gene copy resides in the A region of the mt+ locus [PMID: 11805055]. Independently sequenced, see AF309495
chr16	4162697	4168057	4162829	4167386	+	Cre16.g668950.t1.1	Cre16.g668950.t1.1		4162697,4163123,4163549,4164034,4164235,4164568,4164811,4165168,4165656,4166603	4162996,4163199,4163723,4164091,4164354,4164678,4164891,4165351,4166425,4168057	
chr16	4157284	4162545	4158063	4161987	-	Cre16.g669000.t1.1	Cre16.g669000.t1.1		4160794,4160224,4159880,4159487,4159193,4157284	4162545,4160533,4160002,4159672,4159331,4159034	
chr16	4151320	4157235	4151780	4157139	-	Cre16.g669050.t1.1	Cre16.g669050.t1.1		4157123,4156630,4156243,4155922,4155528,4155207,4153558,4153190,4151320	4157235,4156844,4156383,4155990,4155683,4155350,4154886,4153365,4152963	
chr16	4138136	4139215	4138274	4139100	+	Cre16.g669123.t1.1	Cre16.g669123.t1.1		4138136	4139215	
chr16	4139526	4144257	4139637	4144090	+	Cre16.g669125.t1.1	Cre16.g669125.t1.1		4139526,4140000,4140313,4140523,4140724,4141063,4141429,4141531,4141860,4142117,4142514,4143107,4143506,4143796	4139646,4140073,4140476,4140593,4140792,4141267,4141438,4141599,4141908,4142242,4142724,4143241,4143624,4144257	
chr16	4144316	4146317	4144343	4144785	+	ADH2	Cre16.g669126.t1.1		4144316	4146317	Fe alcohol dehydrogenase. Lacks second domain of bifunctional acetaldehyde/alcohol dehyrdrogenase found in ADH1. Another homolog of ADH2 is presnet on same scaffold.
chr16	4146526	4151287	4147253	4150455	+	Cre16.g669127.t1.1	Cre16.g669127.t1.1		4146526,4147749	4147289,4151287	
chr16	4147016	4151287	4147253	4150455	+	Cre16.g669127.t3.1	Cre16.g669127.t3.1		4147016,4147749	4147289,4151287	
chr16	4146526	4148567	4147253	4148546	+	Cre16.g669127.t2.1	Cre16.g669127.t2.1		4146526,4147749,4148503	4147289,4148398,4148567	
chr16	4134020	4137985	4134799	4137101	-	ADH13	Cre16.g669150.t1.2		4137674,4136893,4136380,4136000,4135636,4135145,4134020	4137985,4137103,4136514,4136118,4135827,4135320,4134947	Iron-containing aldehyde-alcohol dehydrogenase
chr16	3412649	3418350	3412849	3418166	+	Cre16.g669193.t1.1	Cre16.g669193.t1.1		3412649,3413002,3415177,3416068,3417168,3418137	3412883,3414830,3415825,3416247,3417419,3418350	
chr16	4129870	4133005	4130118	4132824	-	Cre16.g669200.t1.2	Cre16.g669200.t1.2		4132810,4131638,4129870	4133005,4132508,4131573	
chr16	4124256	4129774	4124676	4127905	+	Cre16.g669250.t1.1	Cre16.g669250.t1.1		4124256,4124624,4124901,4125066,4125314,4125453,4125614,4125829,4126028,4126366,4126523,4126723,4126969	4124452,4124790,4124973,4125178,4125389,4125523,4125733,4125936,4126211,4126424,4126651,4126845,4129774	
chr16	4124256	4129774	4124676	4127905	+	Cre16.g669250.t2.1	Cre16.g669250.t2.1		4124256,4124624,4124901,4125066,4125314,4125453,4125614,4125829,4126028,4126366,4126523,4126723,4126969	4124452,4124790,4124973,4125178,4125389,4125523,4125733,4125858,4126211,4126424,4126651,4126845,4129774	
chr16	4120250	4123865	4121848	4123585	-	Cre16.g669300.t1.2	Cre16.g669300.t1.2		4122670,4122388,4120250	4123865,4122579,4122274	
chr16	4114402	4118585	4114566	4118403	-	Cre16.g669350.t1.1	Cre16.g669350.t1.1		4117890,4117672,4117111,4116483,4115884,4115630,4115151,4114836,4114402	4118585,4117750,4117406,4116551,4116329,4115708,4115297,4114943,4114632	
chr16	4111074	4114387	4111263	4114208	+	Cre16.g669400.t1.2	Cre16.g669400.t1.2		4111074,4111697,4112106,4112564,4112984,4113524,4114030	4111515,4111955,4112315,4112751,4113154,4113582,4114387	
chr16	4103512	4107645	4105079	4107568	-	Cre16.g669450.t1.1	Cre16.g669450.t1.1		4107541,4107407,4107095,4106653,4106385,4105491,4103512	4107645,4107496,4107244,4106709,4106452,4106082,4105238	
chr16	4107700	4110725	4109396	4110565	-	Cre16.g669452.t1.1	Cre16.g669452.t1.1		4110441,4110287,4109555,4107700	4110725,4110349,4109652,4109417	
chr16	4099170	4103465	4099817	4103391	-	Cre16.g669500.t1.1	Cre16.g669500.t1.1		4103363,4102967,4102139,4101057,4100512,4099170	4103465,4103282,4102751,4101490,4100899,4100282	
chr16	4355649	4365496	4355855	4364865	+	Cre16.g669525.t1.1	Cre16.g669525.t1.1		4355649,4356519,4362079,4362502,4362988,4363647,4364077,4364730	4356064,4356585,4362139,4362548,4363121,4363756,4364258,4365496	May contain additional coding sequence in intronic N-island PMID: 27175017
chr16	3419670	3421248	3420161	3421204	-	Cre16.g669549.t1.1	Cre16.g669549.t1.1		3420760,3420385,3419670	3421248,3420478,3420223	
chr16	4089896	4097763	4090587	4097038	+	METC	Cre16.g669550.t1.2		4089896,4090411,4090985,4091279,4091818,4092512,4092876,4093239,4093705,4094160,4094483,4095046,4095503,4095865,4096197,4096753	4090308,4090667,4091120,4091461,4091973,4092617,4093009,4093367,4093857,4094212,4094648,4095177,4095646,4095975,4096394,4097763	possibly localized to chloroplast; (CBL), Beta-cystathionase, Cysteine lyase
chr16	4086876	4089717	4087488	4089388	+	Cre16.g669600.t1.1	Cre16.g669600.t1.1		4086876,4087107,4087374,4087767,4088180,4089097	4087004,4087186,4087498,4087865,4088823,4089717	
chr16	4085009	4086725	4085640	4086673	-	Cre16.g669650.t1.2	Cre16.g669650.t1.2		4086310,4085009	4086725,4085790	
chr16	4075796	4085007	4076197	4083416	+	Cre16.g669700.t1.1	Cre16.g669700.t1.1		4075796,4075933,4076654,4076974,4077309,4077725,4078856,4079086,4081996,4083302	4075819,4076254,4076777,4077064,4077420,4078532,4078914,4081740,4083096,4085007	
chr16	4070800	4075695	4070899	4075321	-	Cre16.g669750.t1.2	Cre16.g669750.t1.2		4073752,4073374,4072698,4072002,4071618,4070800	4075695,4073517,4073046,4072444,4071707,4071070	
chr16	4065206	4070795	4065437	4069475	+	Cre16.g669800.t1.2	Cre16.g669800.t1.2		4065206,4065667,4066782,4067364,4067636,4068009,4068224,4068524,4068834,4069217	4065566,4065735,4066994,4067447,4067749,4068065,4068286,4068595,4069016,4070795	
chr16	4063296	4065113	4063703	4064510	+	Cre16.g669850.t1.2	Cre16.g669850.t1.2		4063296,4063667,4064066,4064226	4063506,4063932,4064131,4065113	
chr16	4060666	4063177	4060842	4062066	+	FAP399	Cre16.g669900.t1.2		4060666,4061132,4061354,4061954	4060845,4061215,4061691,4063177	
chr16	3421349	3424196	3421442	3423820	+	Cre16.g669905.t1.1	Cre16.g669905.t1.1		3421349,3423791	3423693,3424196	
chr16	4057848	4060535	4058653	4060433	-	ALG14	Cre16.g669950.t1.2		4060279,4059950,4059526,4059076,4057848	4060535,4060089,4059663,4059134,4058831	
chr16	4053380	4057735	4054589	4056939	-	Cre16.g670000.t1.2	Cre16.g670000.t1.2		4056915,4053380	4057735,4055951	
chr16	4048046	4053324	4048216	4052427	+	Cre16.g670050.t1.2	Cre16.g670050.t1.2		4048046,4048408,4048717,4049166,4049965,4050334,4050708,4051647,4052289	4048315,4048484,4048931,4049365,4050102,4050477,4051289,4051835,4053324	
chr16	4041291	4047905	4041832	4047757	-	Cre16.g670100.t1.1	Cre16.g670100.t1.1		4047637,4047506,4047367,4046637,4046023,4045633,4045209,4044017,4043707,4042685,4041291	4047905,4047551,4047437,4047253,4046471,4045898,4045491,4044852,4043865,4043573,4042521	
chr16	4033526	4039147	4034182	4038397	+	Cre16.g670150.t1.1	Cre16.g670150.t1.1		4033526,4034429,4034854,4035289,4035891,4036442,4038382	4034224,4034497,4035030,4035507,4036190,4038055,4039147	
chr16	4039526	4041277	4039992	4040383	+	Cre16.g670151.t1.1	Cre16.g670151.t1.1		4039526	4041277	
chr16	4029680	4031595	4030226	4031374	-	Cre16.g670200.t1.2	Cre16.g670200.t1.2		4031338,4030679,4030473,4029680	4031595,4030779,4030561,4030291	
chr16	4027916	4029677	4028167	4029272	+	TOM6	Cre16.g670250.t1.2		4027916	4029677	Mitochondrial import receptor subunit TOM6 (Translocase of outer membrane 6 kDa)
chr16	3440923	3449486	3442330	3449342	-	Cre16.g670261.t1.1	Cre16.g670261.t1.1		3449191,3448688,3448252,3448016,3447442,3446746,3446304,3445832,3445436,3444837,3444557,3444329,3444053,3443653,3442863,3440923	3449486,3448740,3448407,3448071,3447742,3447024,3446473,3445895,3445548,3445020,3444589,3444425,3444156,3443814,3443015,3442738	
chr16	4021430	4027815	4021998	4027702	-	Cre16.g670300.t1.2	Cre16.g670300.t1.2		4027614,4027351,4026504,4025861,4025180,4024538,4024308,4023849,4023247,4022771,4021430	4027815,4027460,4026736,4026028,4025567,4024766,4024365,4023961,4023641,4022940,4022452	U1 snRNP protein involved in splicing, contains multiple tetratricopeptide repeats; homologue of S. cerevisiae Prp39
chr16	4021430	4027815	4021998	4027702	-	Cre16.g670300.t2.1	Cre16.g670300.t2.1		4027614,4027351,4026504,4025861,4025180,4024538,4023247,4022771,4021430	4027815,4027460,4026736,4026028,4025567,4024766,4023641,4022940,4022452	U1 snRNP protein involved in splicing, contains multiple tetratricopeptide repeats; homologue of S. cerevisiae Prp39
chr16	4016276	4021427	4016433	4020581	+	Cre16.g670350.t1.2	Cre16.g670350.t1.2		4016276,4017164,4018090,4018358,4018784,4019186,4019431,4019878,4020484	4016895,4017700,4018190,4018429,4018862,4019293,4019700,4020029,4021427	
chr16	4008636	4016191	4009599	4015579	+	Cre16.g670400.t1.1	Cre16.g670400.t1.1		4008636,4009210,4009486,4010002,4010230,4010466,4010862,4011183,4011467,4011813,4012085,4012466,4012773,4013118,4013958,4014169,4014658,4015052,4015532	4008723,4009259,4009699,4010051,4010317,4010600,4011032,4011262,4011532,4011878,4012150,4012531,4012838,4013294,4014011,4014183,4014799,4015267,4016191	May contain additional coding sequence in intronic N-island PMID: 27175017
chr16	4008636	4016191	4009599	4015579	+	Cre16.g670400.t2.1	Cre16.g670400.t2.1		4008636,4009210,4009486,4010002,4010233,4010466,4010862,4011183,4011467,4011813,4012085,4012466,4012773,4013118,4013958,4014169,4014658,4015052,4015532	4008723,4009259,4009699,4010051,4010317,4010600,4011032,4011262,4011532,4011878,4012150,4012531,4012838,4013294,4014011,4014183,4014799,4015267,4016191	May contain additional coding sequence in intronic N-island PMID: 27175017
chr16	3999778	4003439	3999823	4002853	+	Cre16.g670500.t1.1	Cre16.g670500.t1.1		3999778,4000106,4000426,4000731,4001173,4001495,4001957,4002700	3999923,4000216,4000515,4000960,4001280,4001587,4002250,4003439	
chr16	4003440	4008265	4005274	4007672	-	Cre16.g670501.t1.1	Cre16.g670501.t1.1		4007545,4006854,4005681,4003440	4008265,4007394,4006656,4005442	
chr16	3990518	3999719	3990878	3999103	+	Cre16.g670550.t1.1	Cre16.g670550.t1.1		3990518,3991285,3991615,3992008,3992545,3992887,3993194,3993514,3994143,3994436,3994760,3995277,3995680,3996107,3996610	3991091,3991373,3991714,3992154,3992652,3992991,3993293,3993610,3994181,3994555,3994862,3995340,3995767,3996254,3999719	DNA repair protein, resembling the Xeroderma pignmentosum group G protein, XPGC, and Rad2 yeast homolog
chr16	3449533	3452438	3449958	3452245	-	Cre16.g670617.t1.1	Cre16.g670617.t1.1		3451984,3451672,3451269,3450966,3450656,3450276,3449533	3452438,3451848,3451448,3451052,3450788,3450502,3450084	
chr16	3960971	3965817	3962312	3964830	-	Cre16.g670650.t1.2	Cre16.g670650.t1.2		3965126,3964815,3964605,3963992,3963405,3962864,3962541,3960971	3965817,3964832,3964632,3964087,3963483,3962939,3962597,3962375	
chr16	3966116	3968967	3967792	3968181	-	Cre16.g670652.t1.1	Cre16.g670652.t1.1		3968084,3966116	3968967,3967917	
chr16	4458189	4461861	4458249	4461397	+	Cre16.g670750.t1.2	Cre16.g670750.t1.2		4458189,4458733,4459270,4459625,4460263,4460607,4461061,4461369	4458426,4458817,4459337,4459708,4460331,4460740,4461150,4461861	
chr16	4461913	4473658	4462672	4473289	-	Cre16.g670754.t1.1	Cre16.g670754.t1.1		4472941,4472398,4471675,4470648,4470268,4469543,4469178,4468778,4468416,4468011,4467557,4466944,4466437,4465935,4465485,4465185,4464025,4463718,4461913	4473658,4472478,4471760,4471518,4470351,4469645,4469307,4468839,4468498,4468076,4467705,4467028,4466532,4466079,4465561,4465302,4464806,4463840,4463377	
chr16	4474730	4476968	4476005	4476192	-	Cre16.g670755.t1.1	Cre16.g670755.t1.1		4474730	4476968	
chr16	4477023	4480448	4479959	4480324	-	Cre16.g670756.t1.1	Cre16.g670756.t1.1		4480206,4477023	4480448,4480015	
chr16	4457029	4457956	4457119	4457618	+	TFC1	Cre16.g670800.t1.2		4457029,4457352,4457531	4457284,4457438,4457956	
chr16	4441809	4456906	4442320	4455028	+	Cre16.g670850.t1.2	Cre16.g670850.t1.2		4441809,4442234,4442480,4442936,4443465,4444108,4444591,4444992,4445380,4445852,4446194,4446627,4447088,4447708,4448419,4448744,4454475,4454866	4441887,4442386,4442648,4443117,4443559,4444395,4444705,4445090,4445570,4446003,4446414,4446832,4447424,4447911,4448603,4454255,4454633,4456906	
chr16	4439659	4441750	4439686	4441362	+	Cre16.g670900.t1.1	Cre16.g670900.t1.1		4439659,4439989,4440423	4439755,4440195,4441750	
chr16	4437499	4439610	4437541	4438868	+	CYC4	Cre16.g670950.t1.2		4437499,4437701,4438137,4438361,4438772	4437601,4437896,4438193,4438461,4439610	Cytochrome c, chloroplast precursor; evolutionarily related to cytochrome c6, but is distinct in having a disulfide group within an extra loop of the protein (PMID: 16815443). It has been tentatively named cytochrome c6A. This protein has been called Atc6 mistakenly.
chr16	3452635	3455058	3453366	3455028	-	GST3	Cre16.g670973.t1.1		3455000,3454870,3454736,3454607,3454412,3454202,3453901,3453576,3452635	3455058,3454928,3454796,3454660,3454509,3454309,3453979,3453676,3453423	Glutathione S-transferase (GST) (sigma class) with 59-61% identity with GSTS1 and GSTS2; similar to Glutathione-requiring prostaglandin D synthase (Glutathione-dependent PGD synthetase) [gi|6225842].  Possible prostaglandin-D synthase activity.  Previousl
chr16	4431289	4437379	4432141	4437064	-	NDA5	Cre16.g671000.t1.2		4437198,4436997,4436404,4435737,4435330,4434975,4434566,4433679,4433262,4432802,4431289	4437379,4437089,4436540,4435874,4435542,4435121,4434665,4433947,4433378,4432878,4432520	NADH:quinone reductase (non-electrogenic)
chr16	4425813	4431098	4425879	4430897	-	Cre16.g671050.t1.2	Cre16.g671050.t1.2		4430510,4430008,4428593,4427434,4426209,4425813	4431098,4430288,4429716,4428275,4427235,4425971	
chr16	4419879	4425810	4419982	4424727	+	Cre16.g671100.t1.2	Cre16.g671100.t1.2		4419879,4420257,4420629,4421596,4421985,4422453,4422926,4423477,4423782,4424283,4424547	4420155,4420369,4420773,4421732,4422110,4422610,4423080,4423528,4423901,4424324,4425810	
chr16	4413694	4419728	4413797	4419583	-	Cre16.g671150.t1.2	Cre16.g671150.t1.2		4419252,4418488,4417980,4417680,4417184,4415834,4415249,4414783,4413694	4419728,4418585,4418066,4417743,4417273,4415925,4415532,4414889,4414531	
chr16	4407155	4413358	4408621	4413127	-	Cre16.g671200.t1.1	Cre16.g671200.t1.1		4413102,4412292,4411145,4410698,4410033,4409716,4409361,4407155	4413358,4412844,4412231,4410925,4410367,4409836,4409456,4409125	Putative basic-leucine zipper (bZIP) transcription factor, may contain a phosphopantetheine attachment site
chr16	4396553	4406968	4398164	4406790	-	Cre16.g671250.t1.2	Cre16.g671250.t1.2		4406738,4406568,4406173,4405657,4405069,4404470,4404068,4403703,4403408,4403014,4402735,4402268,4401851,4401461,4401077,4400423,4400143,4399808,4398616,4396553	4406968,4406605,4406231,4405762,4405139,4404550,4404155,4403784,4403488,4403095,4402816,4402360,4401907,4401495,4401146,4400552,4400210,4399885,4399242,4398449	
chr16	4388313	4396478	4390542	4396162	-	Cre16.g671300.t1.2	Cre16.g671300.t1.2		4396139,4395713,4395414,4395199,4394849,4394338,4393081,4392805,4392161,4391712,4391321,4388313	4396478,4395842,4395500,4395279,4394923,4394430,4393180,4392934,4392296,4391819,4391485,4391202	
chr16	3455113	3457108	3455793	3456956	-	DNJ4	Cre16.g671329.t1.1		3456831,3456487,3456211,3455113	3457108,3456685,3456345,3456072	DnaJ-like protein; contains N-terminal J-domain (pfam00226) but except for J-domain does not show similarity with any other protein in protein database; contains N-terminal extension, but TargetP does not give any clear prediction
chr16	4382814	4388178	4383477	4388086	-	ARS2	Cre16.g671350.t1.2		4387984,4387662,4387339,4387035,4386665,4386234,4385927,4385649,4385304,4385043,4384621,4384304,4384073,4383758,4382814	4388178,4387798,4387489,4387147,4386838,4386380,4386018,4385719,4385426,4385141,4384822,4384452,4384186,4383943,4383567	Periplasmic arylsulfatase (aryl-sulfate sulphohydrolase) [PMID: 2476654]; corresponds to Genbank entry X1618. The nearly identical gene ARS1 is nearby in the genomic sequence, in inverted orientation
chr16	4375689	4382087	4376684	4381432	+	ARS1	Cre16.g671400.t1.2		4375689,4376433,4377048,4377357,4377698,4377995,4378462,4378825,4379120,4379425,4379714,4380038,4380410,4380677,4380969,4381342	4375842,4376786,4377184,4377507,4377810,4378168,4378608,4378916,4379190,4379547,4379812,4380239,4380558,4380790,4381154,4382087	Periplasmic arylsulfatase 1 [PMID: 333989], The nearly identical gene ARS2 is nearby in the genomic sequence, in inverted orientation
chr16	4370839	4375634	4371148	4375491	+	Cre16.g671450.t1.2	Cre16.g671450.t1.2		4370839,4371146,4371438,4371857,4372501,4372920,4373192,4373623,4374038,4374253,4374454,4374898,4375236	4371012,4371180,4371565,4372011,4372602,4372949,4373324,4373749,4374091,4374281,4374521,4374999,4375634	FAD-dependent oxidoreductase, possible D-amino-acid dehydrogenase
chr16	4365760	4370738	4366289	4370671	-	Cre16.g671500.t1.2	Cre16.g671500.t1.2		4370486,4370091,4369178,4368643,4368264,4367737,4367313,4366842,4365760	4370738,4370142,4369282,4368879,4368371,4367937,4367448,4366992,4366392	
chr16	6658663	6671048	6659462	6670790	-	Cre16.g671600.t1.1	Cre16.g671600.t1.1		6670711,6667860,6667017,6666765,6666083,6665820,6664386,6664056,6663406,6660011,6658663	6671048,6670600,6667618,6666873,6666585,6665928,6665648,6664214,6663882,6663174,6659760	
chr16	6653743	6656528	6655198	6656192	-	Cre16.g671650.t1.1	Cre16.g671650.t1.1		6655958,6655449,6653743	6656528,6655480,6655352	
chr16	6654430	6656528	6655198	6656192	-	Cre16.g671650.t2.1	Cre16.g671650.t2.1		6655958,6655449,6654430	6656528,6655480,6655352	
chr16	3457209	3460400	3457499	3459480	+	Cre16.g671685.t1.1	Cre16.g671685.t1.1		3457209,3457727,3458039,3458269,3459036	3457560,3457845,3458124,3458392,3460400	
chr16	6640183	6653608	6641583	6653473	-	Cre16.g671700.t1.1	Cre16.g671700.t1.1		6653338,6653204,6652771,6652326,6651699,6650856,6650604,6650385,6649859,6649156,6648615,6645589,6645026,6643819,6640183	6653608,6653272,6653130,6652445,6651929,6651443,6650655,6650437,6650170,6649588,6648928,6648441,6645163,6644760,6643587	
chr16	6671790	6676158	6672506	6675947	-	Cre16.g671713.t1.1	Cre16.g671713.t1.1		6675707,6675320,6672942,6671790	6676158,6675448,6673020,6672562	
chr16	6637711	6639678	6638084	6639468	-	PFD4	Cre16.g671750.t1.1		6639459,6639287,6639087,6637711	6639678,6639394,6639215,6638216	beta-type subunit of molecular chaperone Prefoldin (PMID: 11599560); has two coiled-coil domains separated by a beta-sheet; stabilizes polypeptide chains prior to folding within CCT chaperonin, in particular tubulin
chr16	6633724	6637618	6634804	6637441	-	PGA8	Cre16.g671800.t1.2		6637098,6636719,6635654,6633724	6637618,6636776,6636545,6634897	
chr16	6676213	6688698	6676799	6688287	-	Cre16.g671825.t1.1	Cre16.g671825.t1.1		6685596,6684744,6684492,6683795,6683532,6682099,6681769,6681076,6677336,6676213	6688698,6685354,6684600,6684312,6683640,6683361,6681927,6681552,6680856,6677085	
chr16	6628323	6633208	6628637	6633172	-	Cre16.g671850.t1.2	Cre16.g671850.t1.2		6632651,6631933,6631380,6630752,6630426,6628323	6633208,6632257,6631511,6631060,6630502,6630126	
chr16	6625470	6628292	6625494	6627933	+	PIN4	Cre16.g671900.t1.1		6625470,6625734,6626141,6626458,6627326,6627511,6627818	6625551,6625910,6626264,6626597,6627373,6627617,6628292	Two-domain protein: N-terminal FHA (forkhead) domain binding phosphoproteins and involved in nuclear signaling; Peptidyl-prolyl cis-trans isomerase(parvulin-type) domain, specific for phosphorylated substrates most similar to AtPIN1 (At2g18040, [PMID: 15051864, PMID:15047905]
chr16	6688841	6699748	6689786	6699472	-	Cre16.g671937.t1.1	Cre16.g671937.t1.1		6699329,6699053,6698649,6698252,6697596,6697125,6696801,6693823,6692765,6692147,6691009,6690622,6690227,6688841	6699748,6699182,6698792,6698395,6697822,6697331,6696873,6696582,6692848,6692545,6691965,6690750,6690305,6689842	
chr16	6620218	6625370	6620483	6625066	+	Cre16.g671950.t1.1	Cre16.g671950.t1.1		6620218,6620611,6621049,6621586,6621931,6622529,6623090,6623451,6623829,6624191,6624425,6624851	6620536,6620857,6621206,6621680,6622100,6622642,6623201,6623530,6623863,6624276,6624481,6625370	
chr16	6617759	6620170	6617792	6619942	+	Cre16.g672000.t1.2	Cre16.g672000.t1.2		6617759,6618083,6618565,6618915,6619483	6617954,6618259,6618651,6619010,6620170	
chr16	3460515	3465108	3460977	3464799	-	Cre16.g672041.t1.1	Cre16.g672041.t1.1		3464635,3464309,3464062,3463774,3463398,3463067,3462753,3462133,3461818,3460515	3465108,3464412,3464123,3463818,3463553,3463183,3462884,3462579,3461953,3461129	
chr16	6699874	6703773	6700079	6703187	+	Cre16.g672049.t1.1	Cre16.g672049.t1.1		6699874,6700306,6701016,6701499,6701853,6702153,6702481,6702924	6700151,6700753,6701203,6701645,6701993,6702229,6702716,6703773	
chr16	6614251	6617658	6615578	6617616	-	Cre16.g672050.t1.1	Cre16.g672050.t1.1		6617376,6617041,6616705,6616354,6615994,6614251	6617658,6617165,6616765,6616403,6616072,6615716	
chr16	6614503	6617658	6615578	6617616	-	Cre16.g672050.t2.1	Cre16.g672050.t2.1		6617376,6617041,6616705,6616354,6615994,6614503	6617658,6617165,6616765,6616403,6616072,6615716	
chr16	6604439	6613794	6604590	6612995	+	Cre16.g672100.t1.1	Cre16.g672100.t1.1		6604439,6604912,6606119,6606576,6606959,6607410,6608077,6608682,6609045,6609504,6610105,6610423,6611584,6612088,6612295,6612778	6604597,6605831,6606273,6606804,6607150,6607610,6608289,6608726,6609187,6609738,6610311,6611181,6611688,6612156,6612362,6613794	
chr16	6599120	6603304	6600015	6602944	-	Cre16.g672150.t1.2	Cre16.g672150.t1.2		6603102,6601918,6601432,6599120	6603304,6603029,6601599,6601002	
chr16	6703958	6713845	6704764	6713413	+	Cre16.g672161.t1.1	Cre16.g672161.t1.1		6703958,6704745,6705332,6705821,6706128,6706435,6706727,6707113,6707406,6707809,6708110,6708378,6708706	6704659,6705078,6705578,6705931,6706238,6706521,6706827,6707212,6707582,6707961,6708220,6708461,6713845	
chr16	6703958	6713845	6704764	6713413	+	Cre16.g672161.t2.1	Cre16.g672161.t2.1		6703958,6704745,6705335,6705821,6706128,6706435,6706727,6707113,6707406,6707809,6708110,6708378,6708706	6704659,6705078,6705578,6705931,6706238,6706521,6706827,6707212,6707582,6707961,6708220,6708461,6713845	
chr16	6576829	6598935	6577159	6598344	+	Cre16.g672200.t1.1	Cre16.g672200.t1.1		6576829,6577308,6577531,6578234,6578440,6578692,6579034,6579271,6579602,6580002,6580222,6582194,6582440,6583389,6583680,6583961,6584497,6584871,6585757,6586066,6586633,6586889,6587248,6587509,6587794,6588167,6588308,6588508,6589062,6589531,6590603,6590750,6590981,6591308,6591508,6592979,6593249,6593840,6594226,6594418,6594716,6595230,6596182,6596514,6596857,6597335,6597585,6597863,6598152	6577184,6577379,6578135,6578362,6578601,6578919,6579156,6579474,6579865,6580103,6582090,6582320,6583262,6583584,6583862,6584369,6584741,6585639,6585965,6586522,6586773,6587134,6587386,6587675,6588072,6588219,6588400,6588948,6589400,6590415,6590638,6590857,6591191,6591376,6592788,6593065,6593722,6594037,6594317,6594612,6595102,6595973,6596403,6596730,6597170,6597448,6597746,6597994,6598935	
chr16	6570409	6576770	6570818	6576153	+	MPA13	Cre16.g672250.t1.1		6570409,6571042,6571499,6571818,6572094,6572452,6572708,6573092,6573475,6573759,6574043,6574309,6574641,6575010,6575190,6575760,6576107	6570888,6571178,6571616,6571888,6572226,6572516,6572834,6573215,6573555,6573847,6574133,6574326,6574751,6575022,6575503,6575825,6576770	Metallophosphoesterase/metallo-dependent phosphatase with purpe acid phosphatase domain
chr16	6713902	6716647	6714243	6716608	-	Cre16.g672273.t1.1	Cre16.g672273.t1.1		6716511,6715885,6715261,6714846,6714624,6713902	6716647,6716412,6715685,6715081,6714681,6714327	
chr16	6568365	6570290	6568439	6569538	+	Cre16.g672300.t1.2	Cre16.g672300.t1.2		6568365,6569090,6569412	6568817,6569206,6570290	High mobility group protein, non-histone component of chromatin.  ChromoDB HMGB345
chr16	6561621	6568268	6562032	6568057	-	Cre16.g672350.t1.1	Cre16.g672350.t1.1		6567968,6567801,6567515,6563903,6563422,6563016,6562397,6561621	6568268,6567854,6567663,6567365,6563590,6563130,6562818,6562203	
chr16	6716808	6721288	6716933	6720695	+	HIS5	Cre16.g672385.t1.1		6716808,6717836,6718308,6719105,6719684,6720146,6720530	6717233,6717930,6718394,6719328,6719829,6720250,6721288	Histidinol-phosphate aminotransferase (EC 2.6.1.9); predicted plastid targeting by Target-P
chr16	3465254	3469345	3465426	3468259	+	Cre16.g672397.t1.1	Cre16.g672397.t1.1		3465254,3465767,3466035,3466214,3466417,3466923,3467172,3467314,3467529,3467845,3468151	3465609,3465838,3466113,3466248,3466479,3467075,3467228,3467394,3467660,3467973,3469345	ts-lethal mutant was isolated (PMID 29743196)
chr16	6558513	6561528	6558973	6561388	-	Cre16.g672400.t1.2	Cre16.g672400.t1.2		6561312,6560970,6560634,6559656,6559284,6558513	6561528,6561211,6560775,6560485,6559373,6559099	
chr16	6551173	6555038	6552056	6554941	-	Cre16.g672450.t1.1	Cre16.g672450.t1.1		6554865,6554523,6554196,6553209,6552918,6552567,6551173	6555038,6554764,6554337,6554059,6553010,6552683,6552146	
chr16	6551173	6555038	6552056	6554941	-	Cre16.g672450.t2.1	Cre16.g672450.t2.1		6554865,6554523,6554196,6553856,6553209,6552918,6552567,6551173	6555038,6554764,6554337,6554059,6553306,6553010,6552683,6552146	
chr16	6555363	6556958	6556515	6556777	-	Cre16.g672453.t1.1	Cre16.g672453.t1.1		6555363	6556958	
chr16	6556479	6558510	6556570	6558203	+	Cre16.g672454.t1.1	Cre16.g672454.t1.1		6556479,6556868,6557219,6557840	6556742,6557136,6557404,6558510	
chr16	6721498	6727311	6721829	6726866	+	Cre16.g672497.t1.1	Cre16.g672497.t1.1		6721498,6721983,6722263,6722879,6723228,6723649,6724035,6724336,6724739,6725560,6725847,6726178,6726542	6721906,6722115,6722685,6723013,6723520,6723805,6724169,6724599,6725476,6725733,6726051,6726398,6727311	ts-lethal mutant block at S/M (PMID 29743196)
chr16	6548253	6551118	6548956	6550860	-	Cre16.g672500.t1.2	Cre16.g672500.t1.2		6550778,6550565,6550372,6550096,6549713,6549329,6548253	6551118,6550608,6550449,6550249,6549912,6549463,6549145	
chr16	6537121	6540649	6537328	6539972	+	WDR92	Cre16.g672600.t1.2		6537121,6537525,6537746,6538147,6538537,6538946,6539239,6539792	6537402,6537591,6537973,6538271,6538645,6539086,6539391,6540649	
chr16	6541417	6547178	6543697	6546967	-	Cre16.g672602.t1.1	Cre16.g672602.t1.1		6546550,6545794,6545594,6545411,6545187,6544992,6544683,6544427,6541417	6547178,6546315,6545647,6545490,6545205,6545051,6544845,6544537,6544260	
chr16	6728322	6731917	6729654	6731671	-	Cre16.g672609.t1.1	Cre16.g672609.t1.1		6731473,6731247,6730952,6730645,6728322	6731917,6731387,6731026,6730740,6730254	
chr16	6533343	6536996	6534341	6536372	-	MCP14	Cre16.g672650.t1.2		6536891,6536297,6535810,6535569,6535391,6535192,6534806,6534561,6533343	6536996,6536443,6535965,6535667,6535455,6535294,6534903,6534694,6534439	Possible 2-oxoglutarate/malate carrier; highly related to other plant mitochondrial carriers
chr16	6527539	6532740	6527596	6532339	+	Cre16.g672700.t1.2	Cre16.g672700.t1.2		6527539,6528058,6528466,6528646,6529042,6529510,6529854,6530243,6530580,6530851,6531144	6527942,6528330,6528552,6528818,6529218,6529695,6530072,6530483,6530652,6530982,6532740	
chr16	6733068	6736579	6733355	6736547	+	Cre16.g672721.t1.1	Cre16.g672721.t1.1		6733068,6735286,6735984	6733958,6735706,6736579	
chr16	6518247	6521120	6518294	6520291	+	Cre16.g672750.t1.2	Cre16.g672750.t1.2		6518247,6518383,6518510,6518672,6518857,6519137,6519574,6519936,6520151	6518309,6518449,6518607,6518750,6519011,6519352,6519777,6519978,6521120	
chr16	3471009	3473238	3471752	3472992	-	Cre16.g672753.t2.1	Cre16.g672753.t2.1		3472939,3472786,3472519,3472349,3472089,3471009	3473238,3472859,3472622,3472437,3472231,3471829	
chr16	3470671	3473238	3471752	3472992	-	Cre16.g672753.t1.1	Cre16.g672753.t1.1		3472939,3472786,3472519,3472349,3472089,3470671	3473238,3472859,3472622,3472437,3472231,3471829	
chr16	6513566	6517510	6513864	6516911	+	GMP1	Cre16.g672800.t1.2		6513566,6514159,6514396,6514554,6514847,6515051,6515801,6516103,6516367,6516601,6516827	6513981,6514215,6514458,6514645,6514931,6515128,6515990,6516226,6516466,6516693,6517510	GDP-D-mannose pyrophosphorylase (D-mannose-1-phosphate guanylyltransferase); a nucleotidyl transferase
chr16	6736828	6738459	6736874	6737811	+	Cre16.g672833.t1.1	Cre16.g672833.t1.1		6736828,6737050,6737632	6736898,6737224,6738459	
chr16	6736828	6738459	6736874	6738020	+	Cre16.g672833.t2.1	Cre16.g672833.t2.1		6736828,6737050,6737681,6737969	6736898,6737224,6737793,6738459	
chr16	6509340	6513516	6509428	6513231	+	Cre16.g672850.t1.1	Cre16.g672850.t1.1		6509340,6509690,6509924,6510221,6510595,6510828,6511180,6511540,6511874,6512208,6512696,6512855	6509520,6509768,6510010,6510394,6510705,6510888,6511400,6511638,6511954,6512320,6512743,6513516	Conserved hypothetical membrane protein with cytochrome b-561 / ferric reductase transmembrane domain
chr16	6738462	6742247	6738979	6742159	-	Cre16.g672945.t1.1	Cre16.g672945.t1.1		6742110,6741943,6738462	6742247,6741998,6741700	
chr16	6496570	6502645	6497478	6502484	-	Cre16.g673000.t1.2	Cre16.g673000.t1.2		6502287,6501770,6501505,6500665,6500192,6499716,6499037,6496570	6502645,6501829,6501589,6500792,6500259,6499798,6499169,6498671	
chr16	6502756	6508825	6502844	6507976	+	LCI2	Cre16.g673001.t1.1		6502756,6503242,6504871,6505272,6505847,6506364,6506956,6507555,6507888	6503072,6503325,6505143,6505397,6505922,6506500,6507132,6507700,6508825	
chr16	6502756	6504537	6502844	6504024	+	LCI2	Cre16.g673001.t2.1		6502756,6503242,6503940	6503072,6503325,6504537	
chr16	6493525	6496515	6494053	6496014	-	Cre16.g673050.t1.1	Cre16.g673050.t1.1		6496462,6496138,6495987,6495686,6495492,6495086,6494583,6493525	6496515,6496282,6496022,6495748,6495540,6495210,6494624,6494305	
chr16	6742302	6745887	6743213	6745766	-	Cre16.g673057.t1.1	Cre16.g673057.t1.1		6745445,6744990,6744684,6742302	6745887,6745109,6744767,6744560	
chr16	6484320	6493315	6486009	6492831	-	Cre16.g673100.t1.1	Cre16.g673100.t1.1		6492779,6491022,6489674,6484320	6493315,6492653,6490812,6489471	
chr16	3473349	3474553	3473450	3473955	+	ACP1	Cre16.g673109.t1.1		3473349,3473778	3473660,3474553	Acyl-carrier protein, complex I, mitochondial respiratory chain.  Acyl carrier protein (ACP), acetyl-CoA carboxylase component; involved in glycerolipid metabolism.  NADH:ubiquinone oxidoreductase subunit protein (=NDUFAB1 subunit); [PMID: 15450959; PMID:
chr16	6478950	6484115	6481221	6484063	-	HDA14	Cre16.g673150.t1.2		6484020,6483822,6483584,6483263,6482981,6482672,6482247,6481953,6481640,6478950	6484115,6483934,6483744,6483514,6483095,6482768,6482431,6482030,6481770,6481378	Histone deacetylase.  ChromDB HDA3401
chr16	6745936	6749127	6746103	6748622	-	Cre16.g673169.t1.1	Cre16.g673169.t1.1		6749052,6748845,6748547,6748266,6747784,6747517,6747040,6746556,6745936	6749127,6748940,6748628,6748353,6748082,6747561,6747303,6746669,6746211	
chr16	6464426	6471773	6465024	6470594	+	Cre16.g673200.t1.2	Cre16.g673200.t1.2		6464426,6464864,6464995,6465480,6466785,6467303,6467711,6468685,6469030,6469388,6469754,6470095,6470351	6464644,6464876,6465082,6465610,6466888,6467411,6467869,6468826,6469247,6469468,6469953,6470215,6471773	
chr16	6472096	6474757	6472306	6474072	+	Cre16.g673203.t1.1	Cre16.g673203.t1.1		6472096,6472531,6474072	6472342,6473467,6474757	
chr16	6474760	6478895	6475819	6478581	-	Cre16.g673204.t1.1	Cre16.g673204.t1.1		6478541,6478288,6478026,6477799,6476640,6474760	6478895,6478425,6478151,6477909,6476756,6475971	
chr16	6452786	6463987	6453185	6463063	+	NRR1	Cre16.g673250.t1.1		6452786,6453169,6453623,6454359,6454713,6458098,6458783,6459159,6459462,6460774,6461093	6453096,6453315,6453864,6454528,6457923,6458632,6458934,6459306,6460602,6460970,6463987	SBP domain protein, with an N-terminal squamosa promoter-binding domain; PMID: 10524240, PMID: 8569690, founding member is the Antirrhinum majus SQUAMOSA promoter binding protein; inactivation reduces TAG accumulation in nitrogen-starvation conditions by 50%
chr16	6749178	6753217	6749574	6752994	-	Cre16.g673281.t1.1	Cre16.g673281.t1.1		6752906,6752596,6752335,6751971,6750962,6750585,6750263,6749859,6749178	6753217,6752717,6752380,6752054,6751116,6750684,6750382,6749988,6749617	
chr16	6448827	6452647	6449175	6451727	-	Cre16.g673300.t1.2	Cre16.g673300.t1.2		6451898,6451454,6451003,6450518,6449418,6448827	6452647,6451749,6451245,6450637,6449707,6449179	
chr16	6445080	6448525	6446109	6448219	-	Cre16.g673350.t1.2	Cre16.g673350.t1.2		6448397,6447955,6447544,6447061,6445080	6448525,6448224,6447786,6447183,6446805	
chr16	6753318	6758469	6753495	6758178	+	Cre16.g673393.t1.1	Cre16.g673393.t1.1		6753318,6753835,6754026,6754301,6754452,6754630,6754810,6755129,6755368,6755543,6755758,6755970,6756134,6756553,6756942,6757303	6753759,6753870,6754160,6754354,6754477,6754696,6754914,6755179,6755429,6755591,6755838,6756019,6756182,6756740,6757135,6758469	
chr16	6753318	6758469	6753495	6758178	+	Cre16.g673393.t2.1	Cre16.g673393.t2.1		6753318,6753835,6754026,6754301,6754452,6754630,6754810,6755129,6755368,6755543,6755758,6755970,6756134,6756553,6756942,6757318	6753759,6753870,6754160,6754354,6754477,6754696,6754914,6755179,6755429,6755591,6755838,6756019,6756182,6756740,6757135,6758469	
chr16	6443359	6444855	6443761	6444819	-	Cre16.g673400.t1.1	Cre16.g673400.t1.1		6444744,6443359	6444855,6444355	
chr16	6436506	6443327	6436653	6442405	+	Cre16.g673450.t1.1	Cre16.g673450.t1.1		6436506,6442405	6442159,6443327	
chr16	3475023	3476248	3475914	3476201	-	Cre16.g673465.t1.1	Cre16.g673465.t1.1		3476128,3475023	3476248,3476039	
chr16	6758481	6761415	6759138	6761323	-	Cre16.g673505.t1.1	Cre16.g673505.t1.1		6761278,6760769,6760629,6760378,6760144,6759809,6759435,6758481	6761415,6760864,6760650,6760415,6760192,6759959,6759481,6759242	
chr16	6422636	6432737	6422983	6432099	+	CGLD36	Cre16.g673550.t1.1		6422636,6424028,6424588,6425284,6425904,6426552,6427084,6427565,6427873,6428239,6428721,6428992,6429334,6429854,6430147,6430648,6431011,6431447,6431905	6423459,6424184,6424752,6425332,6426027,6426714,6427162,6427629,6427923,6428391,6428837,6429077,6429501,6429946,6430280,6430733,6431095,6431638,6432737	
chr16	6433026	6435847	6433325	6435767	+	Cre16.g673553.t1.1	Cre16.g673553.t1.1		6433026,6433549,6434099,6434471,6434752,6435538	6433425,6433653,6434194,6434581,6435232,6435847	
chr16	6435856	6436405	6436071	6436261	-	Cre16.g673554.t1.1	Cre16.g673554.t1.1		6435856	6436405	
chr16	6415157	6422195	6418050	6421401	-	Cre16.g673600.t1.1	Cre16.g673600.t1.1		6420222,6420017,6419823,6419592,6419346,6419032,6418689,6418398,6415157	6422195,6420041,6419844,6419658,6419416,6419143,6418791,6418492,6418275	
chr16	6761462	6765207	6762904	6764880	-	PRF1	Cre16.g673617.t1.1		6764175,6763601,6761462	6765207,6763786,6763099	Mitochondrial peptide chain release factor 1, similar to eubacterial class 1 release factors (prfA, RF1); (reliability class 3 by TargetP)
chr16	6411057	6413437	6411085	6412747	+	LHCB5	Cre16.g673650.t1.1		6411057,6411476,6411949,6412212	6411245,6411560,6412038,6413437	
chr16	6402916	6409823	6403269	6409399	+	Cre16.g673700.t1.2	Cre16.g673700.t1.2		6402916,6403539,6403990,6404343,6405682,6406182,6406668,6407152,6407583,6408066,6408473,6408835,6409228	6403299,6403684,6404071,6405329,6405793,6406409,6406881,6407315,6407746,6408207,6408652,6408923,6409823	
chr16	6765311	6767374	6765375	6766847	+	CPN11	Cre16.g673729.t1.1		6765311,6765537,6765736,6765986,6766700	6765427,6765604,6765786,6766054,6767374	Cochaperonin for CPN60 with MW of the mature protein of 11 kD; heptamers of Cpn10-like cochaperonins bind to one of the two Cpn60 heptameric rings and trigger ATP hydrolysis; CPN11 is more closely related to chloroplast than to mitochondrial CPN10, thus m
chr16	3477082	3483271	3477895	3483035	-	Cre16.g673821.t1.1	Cre16.g673821.t1.1		3482711,3482521,3482138,3481823,3481311,3480823,3480582,3480248,3479958,3479520,3479212,3479006,3478692,3478428,3478100,3477082	3483271,3482627,3482455,3481961,3481466,3481046,3480702,3480418,3480059,3479795,3479362,3479085,3478844,3478546,3478280,3477934	
chr16	6767428	6770259	6767763	6769612	+	Cre16.g673841.t1.1	Cre16.g673841.t1.1		6767428,6767920,6768101,6768455,6768737,6769282	6767846,6767967,6768199,6768556,6768884,6770259	
chr16	6381945	6387315	6382902	6387230	-	Cre16.g673850.t1.1	Cre16.g673850.t1.1		6387008,6386826,6386526,6386016,6385722,6385312,6384983,6384530,6384004,6383499,6381945	6387315,6386887,6386599,6386098,6385814,6385370,6385079,6384653,6384129,6383610,6382954	
chr16	6387917	6402662	6389346	6402422	-	Cre16.g673852.t1.1	Cre16.g673852.t1.1		6402260,6401881,6401207,6400697,6400281,6399694,6399326,6398897,6398478,6397989,6397484,6397025,6396404,6395764,6395410,6395015,6394574,6394138,6393734,6393326,6393014,6392710,6392314,6391720,6391335,6390838,6390337,6390097,6389626,6387917	6402662,6401925,6401272,6400789,6400355,6399753,6399419,6398976,6398611,6398103,6397537,6397189,6396580,6395808,6395523,6395112,6394650,6394275,6393831,6393424,6393105,6392755,6392426,6391883,6391431,6390909,6390484,6390145,6389760,6389366	
chr16	6373931	6381775	6374566	6381579	-	RPC3	Cre16.g673900.t1.1		6381504,6381176,6380730,6380269,6379960,6379663,6379256,6378883,6378172,6377867,6377506,6377083,6376661,6376243,6375820,6375413,6374983,6373931	6381775,6381313,6380812,6380344,6379973,6379762,6379349,6378971,6378477,6378042,6377611,6377149,6376761,6376292,6375919,6375496,6375138,6374728	
chr16	6367516	6373887	6368303	6372676	+	Cre16.g673950.t1.2	Cre16.g673950.t1.2		6367516,6368267,6368818,6369112,6369611,6369923,6370250,6370669,6370947,6371195,6371429,6371760,6372228,6372513	6368150,6368549,6368908,6369417,6369715,6370130,6370378,6370808,6371053,6371281,6371528,6371980,6372349,6373887	
chr16	6770308	6772607	6770339	6772362	+	FKB16-7	Cre16.g673953.t1.1		6770308,6770482,6770680,6770848,6771064,6771446,6771798,6772230	6770391,6770555,6770728,6770885,6771117,6771534,6771864,6772607	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); localization unsure
chr16	6360146	6365750	6360383	6365292	+	Cre16.g674000.t1.2	Cre16.g674000.t1.2		6360146,6360951,6361253,6361689,6362177,6362751,6363295,6363866,6364213,6364587,6365208	6360464,6361029,6361378,6361792,6362290,6362872,6363403,6363937,6364284,6364703,6365750	
chr16	6355696	6360097	6355857	6359529	+	ADH12	Cre16.g674050.t1.2		6355696,6356550,6356936,6357256,6357663,6358150,6358705,6359025,6359429	6356019,6356657,6357011,6357345,6357878,6358265,6358757,6359126,6360097	
chr16	6774858	6778712	6775601	6777418	+	Cre16.g674065.t1.1	Cre16.g674065.t1.1		6774858,6776136,6776409,6776830	6775979,6776215,6776661,6778712	
chr16	6347099	6354875	6348353	6353903	-	Cre16.g674100.t1.1	Cre16.g674100.t1.1		6354079,6353165,6352003,6351775,6350042,6347099	6354875,6353935,6353010,6351837,6351576,6349866	
chr16	6347099	6354875	6348353	6353516	-	Cre16.g674100.t2.1	Cre16.g674100.t2.1		6354079,6353828,6353165,6352003,6351775,6350042,6347099	6354875,6353935,6353618,6353010,6351837,6351576,6349866	
chr16	6337230	6342265	6337735	6342202	-	Cre16.g674150.t1.1	Cre16.g674150.t1.1		6341820,6341320,6340413,6340222,6340035,6339804,6339483,6339173,6338718,6338264,6337230	6342265,6341361,6340829,6340310,6340075,6339893,6339700,6339240,6338940,6338383,6338034	
chr16	6342612	6344005	6343571	6343906	-	Cre16.g674151.t1.1	Cre16.g674151.t1.1		6343823,6342612	6344005,6343659	
chr16	6344055	6346955	6344661	6346520	-	Cre16.g674152.t1.1	Cre16.g674152.t1.1		6346431,6346256,6345426,6344055	6346955,6346339,6346105,6345284	
chr16	3483599	3484680	3483830	3484014	+	Cre16.g674178.t1.1	Cre16.g674178.t1.1		3483599,3483804	3483689,3484680	
chr16	6781133	6785027	6782348	6784692	-	Cre16.g674179.t1.1	Cre16.g674179.t1.1		6784677,6784097,6783890,6783648,6783095,6781133	6785027,6784603,6783969,6783720,6783274,6782933	
chr16	6333716	6335671	6333751	6335265	+	Cre16.g674200.t1.1	Cre16.g674200.t1.1		6333716,6333990,6334233,6334722,6335142	6333929,6334020,6334485,6334820,6335671	
chr16	6330315	6333575	6330658	6333425	-	SRS10	Cre16.g674250.t1.2		6333390,6333288,6333119,6332951,6332000,6331730,6331460,6331139,6330315	6333575,6333297,6333164,6332980,6332112,6331864,6331576,6331242,6330965	Serine/arginine-rich pre-mRNA splicing factor.  This gene is probably alternatively spliced
chr16	6785082	6790327	6786879	6789556	-	Cre16.g674291.t1.1	Cre16.g674291.t1.1		6788701,6788448,6788212,6787903,6787659,6785082	6790327,6788527,6788284,6788025,6787739,6787407	
chr16	6326403	6329994	6327221	6329861	-	FAP269	Cre16.g674300.t1.1		6329735,6329375,6329165,6328801,6328549,6328271,6327896,6327577,6326403	6329994,6329461,6329233,6328910,6328672,6328360,6328031,6327686,6327299	Conserved uncharacterized Flagellar Associated Protein with ankyrin repeats; found in the flagellar proteome
chr16	6324248	6326397	6324429	6325314	+	MRPS13	Cre16.g674350.t1.2		6324248,6324641,6324865,6325182	6324534,6324667,6324975,6326397	
chr16	6323359	6324135	6323867	6324078	-	Cre16.g674400.t1.2	Cre16.g674400.t1.2		6323359	6324135	
chr16	6791305	6795807	6792656	6795533	-	Cre16.g674403.t2.1	Cre16.g674403.t2.1		6794627,6794384,6794143,6793843,6793635,6793479,6791305	6795807,6794463,6794215,6793932,6793715,6793524,6793360	
chr16	6790482	6795807	6792656	6795533	-	Cre16.g674403.t1.1	Cre16.g674403.t1.1		6794627,6794384,6794143,6793843,6793635,6793479,6790482	6795807,6794463,6794215,6793932,6793715,6793524,6793360	
chr16	6319266	6323147	6319310	6322701	+	Cre16.g674450.t1.2	Cre16.g674450.t1.2		6319266,6319531,6320108,6320606,6320958,6321217,6321782,6322083	6319347,6319926,6320384,6320702,6321029,6321349,6321846,6323147	
chr16	6306360	6319095	6306431	6318909	-	Cre16.g674500.t1.2	Cre16.g674500.t1.2		6318559,6318255,6317772,6317444,6316407,6316147,6315860,6315457,6315078,6314606,6314198,6313713,6312905,6312696,6311988,6310312,6310121,6309559,6308978,6308605,6308045,6306938,6306717,6306360	6319095,6318295,6317917,6317581,6316589,6316239,6315899,6315596,6315146,6314739,6314335,6313807,6313083,6312734,6312188,6311731,6310167,6309906,6309046,6308750,6308160,6307584,6306767,6306533	
chr16	6795964	6801966	6796334	6801798	-	DIC3	Cre16.g674515.t1.1		6801768,6801160,6800705,6800271,6799980,6799596,6798700,6798377,6798105,6797736,6797434,6797079,6796768,6795964	6801966,6801598,6800851,6800503,6800138,6799819,6799378,6798496,6798219,6797890,6797584,6797294,6796922,6796586	Flagellar inner dynein arm I1 intermediate chain IC140 [AF159260, PMID: 9843574]
chr16	3484726	3487507	3485306	3487421	-	Cre16.g674534.t1.1	Cre16.g674534.t1.1		3487313,3487153,3486602,3486422,3486119,3485759,3485497,3484726	3487507,3487216,3486687,3486478,3486256,3485830,3485613,3485348	
chr16	6293976	6306305	6295314	6305887	-	Cre16.g674550.t1.1	Cre16.g674550.t1.1		6305837,6305370,6304693,6304240,6303702,6303139,6302489,6302088,6301593,6301245,6300747,6300327,6299872,6299335,6298680,6297606,6297156,6295869,6293976	6306305,6305508,6304764,6304392,6303961,6303454,6302711,6302209,6301754,6301332,6300922,6300425,6299955,6299481,6298800,6297733,6297275,6296655,6295493	
chr16	6287616	6291637	6287934	6290802	+	Cre16.g674600.t1.2	Cre16.g674600.t1.2		6287616,6288360,6288798,6289139,6289458	6288134,6288447,6288998,6289264,6291637	
chr16	6292279	6293735	6293128	6293297	-	Cre16.g674602.t1.1	Cre16.g674602.t1.1		6292279	6293735	
chr16	6802103	6804349	6802304	6803839	+	Cre16.g674627.t1.1	Cre16.g674627.t1.1		6802103,6802505,6802734,6803155,6803406,6803767	6802370,6802616,6802899,6803285,6803461,6804349	Ortholog of the human Meckel Syndrome 1 gene
chr16	6284152	6287325	6284359	6287051	-	Cre16.g674650.t1.2	Cre16.g674650.t1.2		6286867,6286618,6286263,6285593,6284152	6287325,6286692,6286365,6285734,6284443	
chr16	6280054	6284105	6280644	6283614	-	Cre16.g674700.t1.2	Cre16.g674700.t1.2		6283419,6282864,6282516,6282163,6281675,6281447,6281239,6280054	6284105,6282996,6282604,6282303,6281862,6281479,6281309,6280934	
chr16	6804938	6810289	6805217	6809861	+	Cre16.g674739.t1.1	Cre16.g674739.t1.1		6804938,6805424,6805778,6806215,6806753,6807192,6807874,6808342,6808869,6809236,6809710	6805337,6805506,6805878,6806356,6806894,6807544,6807996,6808474,6809000,6809354,6810289	
chr16	6804938	6810119	6805217	6809861	+	Cre16.g674739.t2.1	Cre16.g674739.t2.1		6804938,6805424,6805778,6806215,6806753,6807192,6807874,6808342,6808869,6809236,6809710	6805337,6805506,6805878,6806356,6806894,6807544,6807996,6808474,6809000,6809354,6810119	
chr16	6274496	6280017	6274704	6279732	+	Cre16.g674750.t1.2	Cre16.g674750.t1.2		6274496,6274979,6275209,6275577,6275842,6276086,6276547,6276987,6277220,6277575,6277802,6278071,6278467	6274845,6275038,6275435,6275685,6275925,6276183,6276812,6277039,6277366,6277636,6277910,6278290,6280017	
chr16	6270750	6274141	6270848	6272354	+	Cre16.g674800.t1.2	Cre16.g674800.t1.2		6270750,6271180,6271468,6271776,6272063,6272236	6271007,6271320,6271615,6271874,6272111,6274141	
chr16	6262490	6270625	6263119	6270501	-	Cre16.g674850.t1.1	Cre16.g674850.t1.1		6270279,6270146,6269983,6269490,6264620,6264116,6263539,6262490	6270625,6270217,6270049,6269837,6269354,6264296,6263784,6263368	
chr16	9113	13355	9553	12691	-	Cre16.g674851.t1.1	Cre16.g674851.t1.1		12656,12303,10763,10239,9113	13355,12388,12159,10580,10039	
chr16	6810338	6817059	6810367	6816615	+	HAP2	Cre16.g674852.t1.1		6810338,6810583,6810843,6811373,6811737,6812067,6812674,6812985,6813265,6813689,6814037,6814308,6814688,6815016	6810487,6810683,6811032,6811512,6811842,6812368,6812801,6813061,6813378,6813814,6814166,6814465,6814819,6817059	Gamete membrane fusion protein; gamete fusogen, eukaryotic Class II fusion protein
chr16	3490137	3494278	3491017	3493490	-	CGLD5B	Cre16.g674890.t1.1		3493967,3493414,3492369,3492079,3491778,3490137	3494278,3493508,3493302,3492259,3491912,3491659	
chr16	3490137	3494278	3491017	3493490	-	CGLD5B	Cre16.g674890.t2.1		3493987,3493414,3492369,3492079,3491778,3490137	3494278,3493508,3493302,3492259,3491912,3491659	
chr16	6245066	6262487	6245388	6261909	+	Cre16.g674900.t1.1	Cre16.g674900.t1.1		6245066,6245677,6245950,6246252,6246821,6247084,6247775,6248285,6248712,6251243,6251576,6255819,6256129	6245461,6245785,6246077,6246532,6246901,6247610,6248018,6248494,6249911,6251327,6255680,6255973,6262487	
chr16	6241530	6244295	6242482	6244213	-	Cre16.g674938.t1.2	Cre16.g674938.t1.2		6244044,6243740,6242972,6242819,6242696,6241530	6244295,6243832,6243022,6242830,6242743,6242613	
chr16	6241530	6244295	6242482	6244213	-	Cre16.g674938.t2.1	Cre16.g674938.t2.1		6244044,6243791,6242972,6242819,6242696,6241530	6244295,6243832,6243022,6242830,6242743,6242613	
chr16	6241530	6244295	6242482	6244213	-	Cre16.g674938.t3.1	Cre16.g674938.t3.1		6244044,6243791,6242972,6242696,6241530	6244295,6243832,6243022,6242743,6242613	
chr16	6232986	6239370	6233042	6238975	+	Cre16.g674950.t1.2	Cre16.g674950.t1.2		6232986,6233386,6233764,6234221,6234533,6234841,6235004,6235295,6235839,6236352,6236622,6236790,6237206,6237729,6238104,6238452,6238820	6233167,6233470,6233860,6234285,6234595,6234876,6235101,6235502,6235904,6236443,6236676,6236931,6237300,6237832,6238164,6238581,6239370	Phytoene dehydrogenase
chr16	6817063	6821967	6817900	6821789	-	Cre16.g674964.t1.1	Cre16.g674964.t1.1		6821684,6820536,6820245,6819880,6819566,6819166,6818861,6818521,6817063	6821967,6820579,6820371,6819973,6819617,6819355,6818932,6818673,6817969	
chr16	6229620	6232875	6230099	6232800	-	HEMD1	Cre16.g675000.t1.1		6232607,6232323,6231941,6231646,6231257,6231003,6230646,6229620	6232875,6232435,6232064,6231761,6231344,6231052,6230780,6230321	involved in heme biosynthesis (HEM4, UROS); the last two introns were modelled to host Box CD snoRNAs CrCD56 to 59
chr16	6224626	6227995	6225052	6227831	-	Cre16.g675050.t1.1	Cre16.g675050.t1.1		6227565,6227157,6226747,6225714,6225540,6225280,6224626	6227995,6227241,6226822,6225779,6225585,6225344,6225114	
chr16	6822098	6825939	6822512	6825144	+	Cre16.g675076.t1.1	Cre16.g675076.t1.1		6822098,6823033,6823430,6823733,6824131,6824328,6825053	6822867,6823272,6823531,6823961,6824176,6824887,6825939	
chr16	6218172	6224525	6219774	6224248	-	CPLD53	Cre16.g675100.t1.1		6224041,6223539,6222313,6220105,6218172	6224525,6223769,6223207,6222116,6219921	
chr16	6200080	6218125	6200960	6217977	-	Cre16.g675150.t1.1	Cre16.g675150.t1.1		6217842,6217520,6217086,6216719,6216148,6215663,6215437,6215110,6214493,6214148,6213773,6213311,6212813,6211403,6209182,6208889,6201567,6200080	6218125,6217742,6217324,6216799,6216564,6215962,6215544,6215277,6214875,6214358,6213898,6213600,6213176,6212695,6211262,6209043,6208740,6201372	
chr16	6825942	6828017	6826052	6827830	-	Cre16.g675188.t1.1	Cre16.g675188.t1.1		6827680,6827428,6826556,6825942	6828017,6827574,6827149,6826220	
chr16	6191780	6198975	6193182	6198739	-	Cre16.g675200.t1.1	Cre16.g675200.t1.1		6198525,6198244,6197761,6197355,6196807,6195715,6195193,6194722,6194205,6191780	6198975,6198315,6198011,6197543,6197008,6196148,6195396,6194922,6194440,6193825	
chr16	3497083	3499970	3497948	3499748	-	Cre16.g675246.t1.1	Cre16.g675246.t1.1		3499716,3499301,3499031,3498758,3498547,3498356,3498143,3497083	3499970,3499376,3499135,3498862,3498597,3498393,3498211,3498063	
chr16	6188386	6191774	6188776	6191661	+	LPL2	Cre16.g675250.t1.1		6188386,6189462,6189755,6190079,6190472,6190775,6191142	6189184,6189615,6189822,6190159,6190587,6190985,6191774	biotin/lipoate A/B protein ligase; lipoyl(octanoyl) transferase
chr16	6182032	6188285	6183734	6188139	-	PHT8	Cre16.g675300.t1.1		6188116,6187804,6187264,6186904,6186351,6185911,6185445,6185201,6184550,6182032	6188285,6187940,6187432,6186982,6186449,6186028,6185570,6185322,6184879,6184271	organic anion transporter; related to putative Arabidopsis sodium, phosphate major facilitator superfamily of transporters
chr16	6828703	6831341	6828926	6830974	+	Cre16.g675301.t1.1	Cre16.g675301.t1.1		6828703,6829334,6829812,6830098,6830771	6829094,6829600,6829868,6830413,6831341	
chr16	6167456	6181365	6167944	6180776	+	Cre16.g675350.t1.1	Cre16.g675350.t1.1		6167456,6167906,6168411,6168688,6168944,6169196,6169598,6169953,6170267,6170751,6171142,6171609,6172239,6172558,6172917,6173325,6173810,6174224,6174727,6175168,6175827,6176306,6176604,6176939,6177207,6177495,6178051,6178468,6178699,6179064,6179363,6179832,6180179,6180454,6180740	6167559,6168234,6168456,6168751,6168984,6169331,6169736,6170046,6170451,6170902,6171298,6171819,6172331,6172755,6172993,6173451,6173926,6174528,6174871,6175284,6175934,6176421,6176708,6177059,6177275,6177684,6178212,6178532,6178824,6179190,6179685,6179911,6180280,6180508,6181365	
chr16	6161220	6167345	6162785	6166607	-	Cre16.g675400.t1.1	Cre16.g675400.t1.1		6166163,6165912,6165280,6164874,6164436,6161220	6167345,6165965,6165682,6165064,6164580,6164203	
chr16	6831388	6842829	6831714	6842269	+	Cre16.g675413.t1.1	Cre16.g675413.t1.1		6831388,6831643,6832170,6837188,6837705,6838979	6831493,6831944,6836985,6837298,6838815,6842829	
chr16	6157711	6161165	6158111	6160995	-	Cre16.g675450.t1.2	Cre16.g675450.t1.2		6160944,6160742,6160409,6159896,6159730,6159398,6159187,6158887,6158492,6157711	6161165,6160838,6160476,6159964,6159801,6159454,6159237,6159022,6158535,6158192	possibly a carbonyl/acetoacetyl-CoA reductase
chr16	6157711	6161037	6158111	6160995	-	Cre16.g675450.t2.1	Cre16.g675450.t2.1		6160944,6160742,6160409,6159896,6159730,6159398,6158887,6158492,6157711	6161037,6160838,6160476,6159964,6159801,6159454,6159022,6158535,6158192	possibly a carbonyl/acetoacetyl-CoA reductase
chr16	6157711	6161165	6158111	6160995	-	Cre16.g675450.t3.1	Cre16.g675450.t3.1		6160944,6160742,6160409,6159896,6159730,6159398,6158887,6158492,6157711	6161165,6160838,6160476,6159964,6159801,6159454,6159022,6158535,6158192	possibly a carbonyl/acetoacetyl-CoA reductase
chr16	6154940	6157435	6155516	6156943	-	FKB16-5	Cre16.g675500.t1.2		6156901,6156604,6156247,6156032,6154940	6157435,6156743,6156325,6156085,6155729	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (Immunophilin); homologous to Cyanobacterial FKBPs and At5g45680 (FKBP13, thylakoid lumen); but could be mitochondrial as it lacks a RR TAT targeting motif [PMID: 15701785]; linked to FKB16-2
chr16	6842908	6844809	6843001	6843563	+	Cre16.g675525.t1.1	Cre16.g675525.t1.1		6842908,6843284	6843085,6844809	
chr16	6153045	6154785	6153223	6154746	-	FKB16-2	Cre16.g675550.t1.2		6154698,6154281,6154008,6153559,6153045	6154785,6154549,6154086,6153612,6153364	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (Immunophilin), orthologous to At5g45680; isoform a of gene FKB16-2, probably directed to thylakoid lumen (TP length 26, RR motif); other splicing isoforms possibly directed to stroma or mitochondrion; linked to FKB16-5
chr16	6153045	6154785	6153223	6154746	-	FKB16-2	Cre16.g675550.t2.1		6154698,6154281,6154008,6153559,6153045	6154785,6154543,6154086,6153612,6153364	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (Immunophilin), orthologous to At5g45680; isoform a of gene FKB16-2, probably directed to thylakoid lumen (TP length 26, RR motif); other splicing isoforms possibly directed to stroma or mitochondrion; linked to FKB16-5
chr16	6153045	6154785	6153223	6154746	-	FKB16-2	Cre16.g675550.t3.1		6154698,6154498,6154281,6154008,6153559,6153045	6154785,6154549,6154371,6154086,6153612,6153364	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (Immunophilin), orthologous to At5g45680; isoform a of gene FKB16-2, probably directed to thylakoid lumen (TP length 26, RR motif); other splicing isoforms possibly directed to stroma or mitochondrion; linked to FKB16-5
chr16	6142940	6152615	6143401	6152408	-	Cre16.g675600.t1.1	Cre16.g675600.t1.1		6147278,6146411,6144254,6142940	6152615,6147103,6146168,6144033	
chr16	3500101	3502990	3500216	3502728	+	Cre16.g675602.t1.1	Cre16.g675602.t1.1		3500101,3500588,3501020,3501347,3501799,3502153,3502394,3502676	3500285,3500722,3501172,3501610,3501942,3502191,3502539,3502990	
chr16	6138390	6142885	6139653	6142333	-	Cre16.g675630.t1.2	Cre16.g675630.t1.2		6142701,6138390	6142885,6142481	
chr16	6844822	6846187	6845220	6845967	-	SUM1	Cre16.g675637.t1.1		6845934,6845709,6845442,6844822	6846187,6845792,6845545,6845284	Post-translational modification by SUMO modulates many important cellular processes; linked to SUM2; C-terminal GG motif is followed by CSCA sequence
chr16	6131332	6136477	6131422	6135989	+	ALD8	Cre16.g675650.t1.2		6131332,6131750,6132296,6132724,6132950,6133270,6133733,6134126,6134630,6135040,6135393,6135795	6131518,6131827,6132457,6132802,6133053,6133433,6133880,6134371,6134824,6135141,6135486,6136477	Putative methylmalonate semi-aldehyde dehydrogenase. Present in thylakoid-enriched fraction based on mass spectrometric peptide identification; mitochondrial localization assumed [PMID: 177818]
chr16	6123854	6131215	6125528	6130930	-	Cre16.g675700.t1.1	Cre16.g675700.t1.1		6130396,6129766,6127837,6127126,6126782,6126310,6125942,6123854	6131215,6130159,6129458,6127669,6126850,6126503,6126058,6125573	Putative basic-leucine zipper (bZIP) transcription factor
chr16	6846304	6847917	6846837	6847884	-	SUM2	Cre16.g675749.t1.1		6847842,6847671,6847439,6847103,6846304	6847917,6847727,6847465,6847206,6846901	Post-translational modification by SUMO modulates many important cellular processes; linked to SUM1; C-terminal GG motif is followed by GVSA sequence
chr16	6113506	6123847	6114295	6121137	+	Cre16.g675750.t1.1	Cre16.g675750.t1.1		6113506,6115143,6115640,6116205,6116537,6116858,6119836,6120156,6120432,6120918	6114397,6115255,6115916,6116270,6116608,6119646,6120007,6120208,6120546,6123847	
chr16	6098446	6108597	6098528	6107937	+	Cre16.g675850.t1.2	Cre16.g675850.t1.2		6098446,6099145,6099551,6100309,6100602,6101188,6101687,6102070,6102494,6103239,6103648,6104205,6104731,6105279,6106653,6107274,6107709	6098892,6099236,6099671,6100410,6100708,6101363,6101789,6102343,6102729,6103295,6103966,6104361,6104896,6105411,6106809,6107421,6108597	
chr16	6108650	6113025	6109142	6112792	-	Cre16.g675851.t1.1	Cre16.g675851.t1.1		6112381,6110451,6109996,6109447,6108650	6113025,6112114,6110210,6109668,6109222	
chr16	6847964	6850627	6848701	6850494	-	Cre16.g675861.t1.1	Cre16.g675861.t1.1		6850449,6849875,6849577,6849266,6848897,6847964	6850627,6849931,6849603,6849369,6848968,6848717	
chr16	6847964	6850621	6848892	6850494	-	Cre16.g675861.t2.1	Cre16.g675861.t2.1		6850449,6849875,6849577,6849266,6847964	6850621,6849931,6849603,6849369,6848968	
chr16	6094350	6098335	6095246	6098268	-	OAD1	Cre16.g675900.t1.2		6098130,6097797,6097490,6097054,6096781,6094350	6098335,6097898,6097633,6097200,6096927,6096503	arginine/ornithine decarboxylase, most similar to bacterial decarboxylases; could carry out decarboxylation of Arg, the first step of the agmatine pathway for polyamine biosynthesis
chr16	6087686	6094323	6087745	6093706	+	Cre16.g675950.t1.1	Cre16.g675950.t1.1		6087686,6087911,6088135,6088678,6089531,6090914,6091530,6091890,6092210,6092409,6093134	6087790,6088045,6088369,6089343,6090688,6091103,6091599,6091927,6092297,6092832,6094323	
chr16	6087686	6094323	6087745	6093706	+	Cre16.g675950.t2.1	Cre16.g675950.t2.1		6087686,6087911,6088135,6088678,6089531,6090914,6091530,6091890,6092210,6092409,6093134	6087790,6088045,6088369,6089343,6090688,6091103,6091599,6091927,6092285,6092832,6094323	
chr16	3504753	3508718	3505440	3508437	-	Cre16.g675958.t1.1	Cre16.g675958.t1.1		3508396,3508095,3507371,3506775,3506245,3505864,3504753	3508718,3508320,3507667,3507123,3506512,3506115,3505672	
chr16	6850752	6853878	6850889	6853242	+	Cre16.g675973.t1.1	Cre16.g675973.t1.1		6850752,6851094,6851483,6852370,6852740,6853064	6850989,6851284,6851576,6852494,6852864,6853878	
chr16	6081096	6087627	6081398	6086419	+	Cre16.g676000.t1.2	Cre16.g676000.t1.2		6081096,6084524	6084282,6087627	
chr16	6074368	6080875	6075471	6080374	-	ARP3	Cre16.g676050.t1.1		6080260,6079910,6079428,6078780,6078412,6077935,6077369,6076807,6076181,6075722,6074368	6080875,6080045,6079551,6078915,6078462,6078143,6077537,6076911,6076342,6075855,6075508	Putative Actin related protein 3. Part of the Arp2/3 complex
chr16	6854192	6860387	6855615	6860098	-	Cre16.g676085.t1.1	Cre16.g676085.t1.1		6860060,6859683,6859233,6858702,6858222,6857791,6857514,6857163,6856624,6856137,6854192	6860387,6859739,6859304,6858844,6858467,6857978,6857598,6857223,6856821,6856235,6855940	
chr16	6069380	6072695	6069583	6072488	-	Cre16.g676100.t1.2	Cre16.g676100.t1.2		6072401,6071565,6071195,6069380	6072695,6072245,6071319,6070808	
chr16	6065926	6069339	6066000	6068848	+	MSD3	Cre16.g676150.t1.2		6065926,6066343,6066706,6067056,6067354,6067688,6067965,6068331,6068720	6066089,6066445,6066738,6067136,6067457,6067769,6068123,6068415,6069339	
chr16	6860442	6869397	6861178	6869036	-	RPN1	Cre16.g676197.t1.1		6868439,6867943,6867454,6867015,6866406,6866002,6865499,6865165,6864690,6864206,6863802,6863462,6863099,6862562,6862054,6861503,6860442	6869397,6868089,6867575,6867078,6866655,6866156,6865613,6865265,6864770,6864327,6863883,6863524,6863200,6862724,6862218,6861724,6861330	26S proteasome regulatory complex, base subcomplex, non-ATPase regulatory RPN1 (subunit 2) (PSD2) (PSMD2)
chr16	6057656	6065874	6058170	6065422	+	Cre16.g676200.t1.1	Cre16.g676200.t1.1		6057656,6058697,6059165,6059671,6060435,6060824,6061510,6062046,6062524,6062990,6063544,6064607,6065212	6058360,6058783,6059226,6059907,6060612,6060987,6061587,6062177,6062679,6063103,6063735,6064861,6065874	
chr16	6057656	6065874	6058170	6065422	+	Cre16.g676200.t2.1	Cre16.g676200.t2.1		6057656,6058697,6059165,6059671,6059839,6060435,6060824,6061510,6062046,6062524,6062990,6063544,6064607,6065212	6058360,6058783,6059226,6059709,6059907,6060612,6060987,6061587,6062177,6062679,6063103,6063735,6064861,6065874	
chr16	6052748	6057505	6053649	6056970	-	MFT28	Cre16.g676250.t1.2		6056580,6056107,6054966,6054563,6054132,6052748	6057505,6056313,6055307,6054704,6054291,6053893	Permease
chr16	6044870	6052025	6046073	6051976	-	Cre16.g676300.t1.1	Cre16.g676300.t1.1		6051825,6051419,6051106,6050597,6050099,6049259,6048863,6048543,6047995,6044870	6052025,6051503,6051304,6050841,6050222,6049810,6048956,6048614,6048182,6047654	
chr16	6869955	6876967	6872560	6876600	-	Cre16.g676309.t1.1	Cre16.g676309.t1.1		6876413,6875616,6874870,6874510,6874124,6873898,6873373,6869955	6876967,6876211,6874968,6874665,6874250,6873948,6873749,6873199	
chr16	3508815	3511117	3508910	3510499	+	EIF3H	Cre16.g676314.t1.1		3508815,3509253,3509796	3509090,3509362,3511117	Eukaryotic translation initiation factor 3, subunit H.  Also known as eIF3 subunit 3, eIF3-gamma,eIF3-p40, and eIF3h
chr16	6029176	6044867	6030158	6044408	+	Cre16.g676350.t1.1	Cre16.g676350.t1.1		6029176,6030146,6030921,6031338,6031836,6032200,6032812,6033187,6033949,6034451,6034670,6035475,6036005,6036407,6036871,6037254,6037676,6038439,6038981,6039261,6039792,6040228,6040602,6041394,6041844,6042218,6042617,6042973,6044031	6029621,6030548,6031027,6031452,6031913,6032328,6032986,6033555,6034039,6034515,6034716,6035633,6036086,6036525,6036960,6037310,6037723,6038679,6039086,6039365,6039915,6040299,6040718,6041474,6042005,6042381,6042695,6043096,6044867	
chr16	6012710	6023655	6013242	6023460	-	HEL63	Cre16.g676400.t1.2		6023457,6023240,6023082,6022527,6022165,6021248,6020694,6020300,6019858,6019316,6018893,6018433,6018120,6017663,6017229,6016577,6016054,6015820,6015481,6015103,6014586,6013618,6012710	6023655,6023365,6023140,6022914,6022272,6021584,6021083,6020517,6020103,6019487,6019014,6018561,6018243,6017856,6017330,6016740,6016201,6015878,6015613,6015150,6014753,6014308,6013391	
chr16	6023776	6024587	6023942	6024489	+	Cre16.g676402.t1.1	Cre16.g676402.t1.1		6023776,6024322	6023982,6024587	
chr16	6879565	6890117	6881248	6889563	-	Cre16.g676421.t1.1	Cre16.g676421.t1.1		6889419,6889154,6888663,6888477,6888188,6887874,6887299,6886986,6886351,6885745,6885415,6885040,6884623,6884185,6883895,6883443,6883161,6882581,6882169,6879565	6890117,6889322,6888752,6888517,6888333,6887987,6887530,6887069,6886800,6886204,6885545,6885096,6884895,6884479,6884001,6883727,6883262,6882967,6882419,6881993	
chr16	6008706	6012385	6008970	6011199	+	CPLD39	Cre16.g676450.t1.2		6008706,6009217,6009804,6010711,6011063	6009084,6009336,6009953,6010769,6012385	
chr16	6002372	6008257	6002811	6008032	-	Cre16.g676500.t1.2	Cre16.g676500.t1.2		6007936,6007801,6007223,6006025,6005685,6005003,6004766,6004369,6002372	6008257,6007849,6007642,6006899,6005760,6005316,6004811,6004504,6004195	
chr16	6891722	6909905	6892192	6909792	-	Cre16.g676533.t1.1	Cre16.g676533.t1.1		6909626,6908828,6908541,6908171,6907675,6907452,6906877,6906282,6905525,6905110,6904498,6904255,6903876,6902374,6901872,6901533,6900992,6900603,6900260,6899929,6899270,6898781,6898353,6898052,6897811,6896912,6896539,6896093,6895408,6895009,6894641,6894202,6893881,6893385,6892910,6892581,6891722	6909905,6909291,6908612,6908312,6907947,6907513,6907133,6906783,6905953,6905376,6904758,6904338,6904041,6903554,6901994,6901702,6901277,6900751,6900410,6900069,6899500,6899019,6898566,6898193,6897891,6897619,6896623,6896278,6895834,6895089,6894788,6894494,6894036,6893638,6893126,6892709,6892420	
chr16	6891722	6909905	6892192	6909792	-	Cre16.g676533.t2.1	Cre16.g676533.t2.1		6909626,6908828,6908541,6908171,6907675,6907452,6906877,6906282,6905525,6905110,6904498,6904255,6903876,6902374,6901872,6901533,6900992,6900603,6900260,6899929,6899270,6898781,6898353,6898052,6897811,6896912,6896539,6896093,6895408,6895009,6894641,6894202,6893881,6893385,6892910,6892581,6891722	6909905,6909291,6908612,6908312,6907947,6907513,6907133,6906783,6905953,6905376,6904755,6904338,6904041,6903554,6901994,6901702,6901277,6900751,6900410,6900069,6899500,6899019,6898566,6898193,6897891,6897619,6896623,6896278,6895834,6895089,6894788,6894494,6894036,6893638,6893126,6892709,6892420	
chr16	5999068	6002299	5999760	6001217	+	Cre16.g676537.t1.1	Cre16.g676537.t1.1		5999068,6000671,6001049	6000345,6000745,6002299	
chr16	5994831	5998947	5995809	5998768	-	Cre16.g676550.t1.2	Cre16.g676550.t1.2		5998621,5998182,5997427,5997099,5996559,5996214,5994831	5998947,5998267,5997579,5997207,5996819,5996339,5995908	
chr16	5991432	5994829	5991851	5994116	+	Cre16.g676600.t1.1	Cre16.g676600.t1.1		5991432,5992566,5993061,5993402,5994005	5992366,5992802,5993196,5993776,5994829	
chr16	6910046	6912757	6910176	6912044	+	DRC8	Cre16.g676645.t1.1		6910046,6910762,6911672,6912014	6910329,6910959,6911791,6912757	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr16	5983028	5990391	5983528	5990296	-	AP1G1	Cre16.g676650.t1.2		5990056,5989803,5989501,5989087,5988523,5988173,5987853,5987470,5987028,5986518,5986313,5985846,5985379,5984813,5984380,5983973,5983028	5990391,5989956,5989591,5989198,5988660,5988253,5987915,5987610,5987116,5986634,5986367,5986091,5985551,5985066,5984621,5984194,5983741	Expressed Protein. Gamma-Adaptin. Clathrin Adaptor Complex Large Subunit, putative member of AP-1 complex
chr16	3512569	3514250	3512637	3513066	+	Cre16.g676670.t1.1	Cre16.g676670.t1.1		3512569,3512943	3512679,3514250	
chr16	5977691	5982647	5978653	5982379	-	Cre16.g676700.t1.2	Cre16.g676700.t1.2		5982340,5982059,5981808,5981374,5979121,5977691	5982647,5982259,5981951,5981469,5981175,5978851	
chr16	5972248	5975913	5972798	5975479	+	Cre16.g676750.t1.2	Cre16.g676750.t1.2		5972248,5973222,5973672,5974300,5975440	5973032,5973397,5973996,5975178,5975913	
chr16	6912930	6922035	6914110	6921647	-	PTB8	Cre16.g676757.t1.1		6921563,6921461,6921035,6920676,6920327,6919999,6919489,6919252,6918958,6916846,6916394,6916067,6915783,6915550,6915274,6914796,6914343,6912930	6922035,6921473,6921192,6920747,6920378,6920093,6919611,6919311,6919097,6918843,6916667,6916195,6915884,6915628,6915413,6915007,6914514,6914227	Putative phosphate transporter, similar to yeast Pho89, Neurospora PHO4 probable Na+/Pi symporters; highest identity to PTB1 (60%) of the PTB family members.
chr16	6912930	6922035	6914110	6921647	-	PTB8	Cre16.g676757.t2.1		6921584,6921461,6921035,6920676,6920327,6919999,6919489,6919252,6918958,6916846,6916394,6916067,6915783,6915550,6915274,6914796,6914343,6912930	6922035,6921473,6921192,6920747,6920378,6920093,6919611,6919311,6919097,6918843,6916667,6916195,6915884,6915628,6915413,6915007,6914514,6914227	Putative phosphate transporter, similar to yeast Pho89, Neurospora PHO4 probable Na+/Pi symporters; highest identity to PTB1 (60%) of the PTB family members.
chr16	5962637	5971997	5963278	5971913	-	Cre16.g676800.t1.2	Cre16.g676800.t1.2		5971767,5971512,5971251,5970906,5970534,5970229,5969673,5969318,5968719,5968370,5967828,5967567,5967140,5966845,5966175,5965856,5965426,5964992,5964278,5963610,5962637	5971997,5971611,5971420,5971056,5970622,5970371,5969872,5969434,5969055,5968532,5968125,5967659,5967325,5966921,5966658,5965978,5965593,5965162,5964487,5963965,5963390	
chr16	5954702	5962588	5955343	5962084	-	Cre16.g676850.t1.2	Cre16.g676850.t1.2		5962365,5961732,5961405,5960885,5960454,5960121,5959873,5959592,5959173,5958770,5958100,5957775,5957339,5956951,5956306,5955903,5954702	5962588,5962097,5961469,5961010,5960613,5960179,5959992,5959654,5959313,5958925,5958346,5957920,5957446,5957046,5956626,5955983,5955460	
chr16	6922755	6931725	6923875	6931012	-	Cre16.g676869.t1.1	Cre16.g676869.t1.1		6930857,6928548,6928160,6927816,6927445,6926941,6926706,6926394,6925860,6925627,6925380,6925145,6924950,6924649,6924319,6922755	6931725,6930648,6928303,6927935,6927573,6927216,6926842,6926500,6926179,6925671,6925463,6925201,6924989,6924755,6924426,6924079	
chr16	5949852	5954647	5950603	5954374	-	Cre16.g676900.t1.2	Cre16.g676900.t1.2		5954164,5953349,5952725,5952371,5952011,5951402,5951092,5949852	5954647,5953585,5952862,5952473,5952105,5951679,5951202,5950880	UAA transporter family
chr16	6932642	6954195	6932845	6953779	-	Cre16.g676981.t1.1	Cre16.g676981.t1.1		6953710,6953399,6952233,6951981,6950782,6950660,6950312,6950055,6949870,6949545,6949321,6948752,6948156,6947846,6947725,6947471,6947020,6946672,6946272,6946071,6945890,6945604,6945322,6945092,6944857,6944598,6944241,6943986,6943729,6943494,6943250,6942880,6942616,6942347,6942057,6941722,6941402,6941230,6940941,6940501,6940180,6939892,6939635,6938883,6938285,6937934,6937591,6937357,6937088,6936729,6936383,6936168,6935823,6934999,6934339,6933938,6932642	6954195,6953614,6953221,6952149,6951837,6950702,6950541,6950192,6949947,6949778,6949401,6949184,6948644,6947988,6947775,6947551,6947349,6946886,6946569,6946154,6945981,6945757,6945465,6945189,6944938,6944705,6944404,6944120,6943828,6943640,6943396,6943035,6942759,6942478,6942206,6941910,6941581,6941266,6941125,6940820,6940420,6940090,6939771,6939536,6938747,6938150,6937801,6937476,6937201,6936929,6936613,6936239,6936040,6935641,6934853,6934244,6933778	
chr16	5933460	5943577	5934065	5943228	-	HSP70E	Cre16.g677000.t1.2		5943432,5943182,5941792,5941050,5940567,5940106,5939676,5939400,5939134,5938704,5938035,5937572,5937045,5936538,5936113,5935573,5935153,5934680,5934386,5933460	5943577,5943311,5941904,5941160,5940701,5940243,5939794,5939469,5939207,5938890,5938118,5937671,5937193,5936648,5936226,5935721,5935270,5934920,5934472,5934244	HSP70E is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; it is more similar to HSP110-like proteins, as is HSP70G; HSP70E is inducible by MgProto and light; PMID: 16143837, 16143841. ts lethal mutations isolated (PMID 25336509)
chr16	5943708	5949849	5943767	5949741	+	Cre16.g677001.t1.1	Cre16.g677001.t1.1		5943708,5943946,5945112,5945469,5946337,5946725,5947085,5947518,5947933,5948320,5948758,5949145,5949537	5943831,5944841,5945238,5945960,5946527,5946799,5947129,5947612,5948053,5948520,5948814,5949300,5949849	
chr16	3514561	3518728	3515087	3518639	-	PDH1	Cre16.g677026.t1.1		3518591,3518487,3518345,3518246,3518107,3517821,3517644,3517166,3516066,3515457,3514561	3518728,3518525,3518425,3518272,3518169,3518033,3517682,3517291,3516212,3515640,3515182	Pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase E1 beta subunit (EC 1.2.4.1), probable mitochondrial precursor by homology to 0850; dominant of 2 potential splicing variants (minor variant PDH1b)
chr16	5912588	5928485	5912805	5927740	+	Cre16.g677050.t1.1	Cre16.g677050.t1.1		5912588,5913023,5913477,5914461,5914882,5915399,5915958,5916401,5916755,5917116,5917656,5918316,5918987,5919482,5920180,5920559,5920918,5921612,5922152,5922463,5923020,5923607,5924046,5924813,5925335,5925808,5926300	5912918,5913137,5913545,5914574,5915139,5915585,5916139,5916487,5916883,5917211,5917815,5918566,5919085,5919682,5920248,5920609,5921060,5921747,5922276,5922633,5923116,5923705,5924198,5924958,5925470,5925942,5928485	
chr16	6954736	6958577	6954828	6958113	+	Cre16.g677093.t1.1	Cre16.g677093.t1.1		6954736,6954994,6955317,6955673,6956205,6956601,6956922,6957205,6957360,6957798	6954887,6955158,6955451,6956063,6956449,6956764,6957093,6957229,6957623,6958577	
chr16	5904352	5911747	5906786	5910993	-	Cre16.g677100.t1.1	Cre16.g677100.t1.1		5910930,5910347,5908106,5904352	5911747,5910429,5910153,5907868	
chr16	5904352	5912037	5906786	5910993	-	Cre16.g677100.t2.1	Cre16.g677100.t2.1		5911251,5910930,5910347,5908106,5904352	5912037,5911132,5910429,5910153,5907868	
chr16	5899528	5904349	5899678	5903886	+	Cre16.g677150.t1.1	Cre16.g677150.t1.1		5899528,5900288,5900813,5901082,5901433,5901775,5901991,5902298,5902961,5903353,5903598	5900036,5900480,5900856,5901166,5901541,5901849,5902086,5902420,5903105,5903435,5904349	
chr16	5896228	5899479	5896348	5898939	+	Cre16.g677200.t1.1	Cre16.g677200.t1.1		5896228,5898363	5898166,5899479	
chr16	6958706	6973297	6959219	6972261	+	Cre16.g677205.t1.1	Cre16.g677205.t1.1		6958706,6959219,6959598,6959784,6959946,6960224,6960545,6960806,6961042,6961315,6961603,6961931,6962122,6962483,6962834,6963136,6963397,6963631,6963830,6964128,6964742,6965148,6965435,6965789,6966295,6966525,6967042,6967464,6967797,6968820,6969124,6969495,6969952,6970193,6970522,6970969,6971467,6971773,6972013	6958983,6959435,6959663,6959848,6960022,6960394,6960606,6960919,6961121,6961461,6961797,6961985,6962303,6962579,6962971,6963229,6963488,6963705,6963992,6964579,6964957,6965267,6965604,6966175,6966351,6966909,6967253,6967641,6968640,6968907,6969321,6969737,6970066,6970331,6970793,6971324,6971587,6971863,6973297	
chr16	6958706	6973297	6959219	6972261	+	Cre16.g677205.t2.1	Cre16.g677205.t2.1		6958706,6959219,6959598,6959784,6959946,6960224,6960545,6960806,6961042,6961315,6961603,6961931,6962122,6962483,6962834,6963136,6963397,6963631,6963830,6964128,6964742,6965148,6965435,6965789,6966295,6966525,6967042,6967464,6967800,6968820,6969124,6969495,6969952,6970193,6970522,6970969,6971467,6971773,6972013	6958983,6959435,6959663,6959848,6960022,6960394,6960606,6960919,6961121,6961461,6961797,6961985,6962303,6962579,6962971,6963229,6963488,6963705,6963992,6964579,6964957,6965267,6965604,6966175,6966351,6966909,6967253,6967641,6968640,6968907,6969321,6969737,6970066,6970331,6970793,6971324,6971587,6971863,6973297	
chr16	6958706	6973297	6959219	6972261	+	Cre16.g677205.t3.1	Cre16.g677205.t3.1		6958706,6959219,6959598,6959784,6959946,6960224,6960545,6960806,6961042,6961315,6961603,6961931,6962122,6962483,6962834,6963136,6963397,6963631,6963830,6964128,6964742,6965148,6965435,6965789,6966295,6966525,6967042,6967464,6967914,6968820,6969124,6969495,6969952,6970193,6970522,6970969,6971467,6971773,6972013	6958983,6959435,6959663,6959848,6960022,6960394,6960606,6960919,6961121,6961461,6961797,6961985,6962303,6962579,6962971,6963229,6963488,6963705,6963992,6964579,6964957,6965267,6965604,6966175,6966351,6966909,6967253,6967641,6968640,6968907,6969321,6969737,6970066,6970331,6970793,6971324,6971587,6971863,6973297	
chr16	5891512	5895917	5892590	5895640	-	TEH5	Cre16.g677250.t1.2		5895483,5895115,5894587,5893854,5893395,5893010,5891512	5895917,5895247,5894692,5893948,5893551,5893072,5892737	
chr16	5886114	5891427	5886348	5890993	-	GOX16	Cre16.g677300.t1.1		5890828,5890249,5890064,5889771,5889509,5889014,5888685,5888293,5888078,5887910,5887567,5887246,5886991,5886654,5886114	5891427,5890686,5890103,5889871,5889601,5889156,5888810,5888508,5888127,5887950,5887684,5887334,5887130,5886765,5886516	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); next to GOX17 and GOX18
chr16	6973300	6974695	6973546	6974636	-	Cre16.g677317.t1.1	Cre16.g677317.t1.1		6973300	6974695	
chr16	5879778	5886089	5880064	5885611	+	Cre16.g677350.t1.2	Cre16.g677350.t1.2		5879778,5881626,5882107,5882884,5883252,5883680,5883990,5884540,5884870	5881294,5881712,5882225,5882956,5883481,5883785,5884339,5884666,5886089	
chr16	3519678	3525978	3521344	3525215	-	Cre16.g677382.t1.1	Cre16.g677382.t1.1		3525086,3524703,3524557,3524403,3524231,3524024,3521970,3519678	3525978,3524806,3524629,3524433,3524269,3524084,3523563,3521860	
chr16	3519678	3525343	3521344	3525215	-	Cre16.g677382.t2.1	Cre16.g677382.t2.1		3525086,3524703,3524557,3524403,3524231,3524024,3521970,3519678	3525343,3524806,3524629,3524433,3524269,3524084,3523563,3521860	
chr16	6974750	6981275	6977471	6981140	-	Cre16.g677429.t1.1	Cre16.g677429.t1.1		6979999,6974750	6981275,6977500	
chr16	5874635	5879599	5874699	5878778	+	Cre16.g677450.t1.2	Cre16.g677450.t1.2		5874635,5875011,5875576,5875966,5876313,5876713,5877123,5877318,5877736,5878160,5878696	5874737,5875105,5875661,5876097,5876405,5876793,5877181,5877397,5877831,5878313,5879599	
chr16	5873038	5874569	5873172	5873830	+	APK1	Cre16.g677500.t1.2		5873038	5874569	Chloroplast targetted; involved in sulfur assimilation; catalyzes the phosphorylation of adenosine 5'-phosphosulfate to produce phosphoadenosine phosphosulfate. Appears to be a single gene in Chlamydomonas; homolog of Arabidopsis AKN1 (APK) and AKN2. The gene is not upregulated during a 24h time course of sulfur starvation; referred to as AKN2 in PMID:15470261.
chr16	6981376	6986097	6983004	6983766	+	Cre16.g677541.t1.1	Cre16.g677541.t1.1		6981376,6982681,6982998,6983346	6981940,6982827,6983061,6986097	
chr16	5858018	5872880	5858132	5871525	+	Cre16.g677550.t1.1	Cre16.g677550.t1.1		5858018,5858332,5858650,5859366,5859598,5860002,5860515,5861090,5861715,5862841,5863210,5863569,5863956,5864247,5864743,5865117,5865669,5866025,5866419,5866882,5867162	5858248,5858407,5858909,5859479,5859737,5860264,5860989,5861490,5861825,5862933,5863307,5863733,5864037,5864471,5864853,5865239,5865773,5866188,5866647,5867012,5872880	Contains periplasmic binding protein-like II domain and bacterial extracellular solute-binding (family 1) domain.  May be involved in solute transport and early steps of a signal transduction cascade
chr16	5854921	5857917	5855636	5857832	-	SOM5	Cre16.g677600.t1.2		5857723,5857064,5856377,5855898,5854921	5857917,5857548,5856817,5856227,5855768	S-adenosyl-L-methionine-dependent methyltransferase
chr16	5851051	5854055	5851443	5852881	+	Cre16.g677650.t1.1	Cre16.g677650.t1.1		5851051,5851618,5851818,5851994,5852329	5851536,5851728,5851868,5852083,5854055	
chr16	6989076	6991997	6989290	6989799	+	Cre16.g677653.t1.1	Cre16.g677653.t1.1		6989076,6989476,6989773	6989403,6989660,6991997	
chr16	5844665	5850720	5845540	5850671	-	Cre16.g677700.t1.1	Cre16.g677700.t1.1		5850655,5850522,5850208,5849736,5848872,5848405,5848022,5847733,5847450,5847085,5846780,5846374,5846049,5844665	5850720,5850569,5850243,5850011,5849549,5848506,5848171,5847839,5847546,5847161,5846839,5846490,5846189,5845666	
chr16	4544320	4550165	4544476	4549245	+	Cre16.g677702.t1.1	Cre16.g677702.t1.1		4544320,4544757,4545118,4545336,4545797,4546298,4547007,4547339,4547796,4548364	4544683,4544937,4545206,4545494,4546043,4546743,4547135,4547448,4547998,4550165	
chr16	3526073	3527988	3527150	3527673	-	Cre16.g677738.t1.1	Cre16.g677738.t1.1		3526073	3527988	
chr16	5840891	5843843	5841467	5842913	+	Cre16.g677750.t1.2	Cre16.g677750.t1.2		5840891,5842843	5842636,5843843	
chr16	6992046	7007635	6993025	7006814	+	Cre16.g677765.t1.1	Cre16.g677765.t1.1		6992046,6993025,6993403,6994941,6995089,6995406,6995734,6995995,6996231,6996503,6996790,6997118,6997318,6997638,6997984,6998266,6998527,6998754,6998945,6999247,6999808,7000100,7000452,7000958,7001182,7001699,7002115,7002450,7003365,7003669,7004040,7004501,7004742,7005071,7005518,7006020,7006327,7006566	6992801,6993241,6993468,6995005,6995165,6995576,6995795,6996108,6996310,6996649,6996984,6997172,6997496,6997731,6998118,6998359,6998618,6998828,6999107,6999626,6999927,7000269,7000838,7001014,7001566,7001910,7002292,7003185,7003452,7003866,7004282,7004615,7004880,7005342,7005873,7006140,7006417,7007635	
chr16	5836931	5840326	5837002	5839951	+	Cre16.g677800.t1.2	Cre16.g677800.t1.2		5836931,5837636,5838078,5838812,5839285,5839635	5837186,5837775,5838552,5839008,5839361,5840326	
chr16	5832511	5836860	5832634	5835605	+	Cre16.g677850.t1.1	Cre16.g677850.t1.1		5832511,5833492,5833924,5834166,5834651,5835180,5835541	5832838,5833620,5834019,5834236,5834765,5835304,5836860	
chr16	7010478	7015655	7010972	7015233	-	Cre16.g677877.t1.1	Cre16.g677877.t1.1		7015115,7014894,7013067,7012658,7010478	7015655,7014985,7014753,7012911,7012481	
chr16	5829289	5832410	5829998	5832124	-	Cre16.g677900.t1.1	Cre16.g677900.t1.1		5832070,5831597,5829289	5832410,5831698,5831228	
chr16	5825865	5829070	5827380	5828916	-	Cre16.g677920.t1.2	Cre16.g677920.t1.2		5828808,5828418,5828173,5827694,5825865	5829070,5828745,5828296,5827789,5827489	
chr16	5825865	5829010	5827380	5828916	-	Cre16.g677920.t2.1	Cre16.g677920.t2.1		5828808,5828608,5828418,5828173,5827694,5825865	5829010,5828745,5828523,5828296,5827789,5827489	
chr16	5817591	5825562	5817777	5825102	+	QOR1	Cre16.g677950.t1.1		5817591,5818097,5818355,5818735,5819137,5819418,5819902,5820520,5820952,5821413,5821840,5822274,5822669,5823459,5823732,5824036,5824368,5824840	5817867,5818132,5818486,5818850,5819195,5819461,5820036,5820672,5821158,5821579,5821928,5822409,5822757,5823544,5823779,5824153,5824473,5825562	Zinc-containing alcohol dehydrogenase, Similar to ARP protein from Arabidopsis (At1g4967.1)
chr16	7016716	7019587	7016767	7019456	+	Cre16.g677989.t1.1	Cre16.g677989.t1.1		7016716,7017309,7017714,7018128,7018432,7018700,7019103,7019369	7016986,7017402,7017892,7018220,7018482,7018792,7019183,7019587	
chr16	5813561	5817462	5813730	5816657	+	CPL22	Cre16.g678000.t1.2		5813561,5813697,5813998,5814670,5815126,5815364,5815703,5816144,5816567	5813599,5813816,5814229,5814739,5815163,5815496,5815851,5816311,5817462	
chr16	5809475	5813430	5809739	5813351	-	SRE3	Cre16.g678050.t1.1		5813292,5813143,5812960,5812613,5812244,5811895,5811273,5810768,5810418,5810197,5809475	5813430,5813208,5812987,5812714,5812312,5812011,5811697,5810974,5810564,5810250,5810055	PWI domain-containing pre-mRNA splicing factor.  An atypical serine/arginine-rich splicing factor lacking an RNA recognition motif (RRM), but which may help splice pre-mRNAs with weak 3' splice sites dependent on purine-rich exonic enhancer sequences (PMI
chr16	3528123	3530638	3528169	3529980	-	Cre16.g678094.t1.1	Cre16.g678094.t1.1		3530508,3529955,3529507,3529253,3528976,3528721,3528343,3528123	3530638,3530075,3529812,3529280,3529136,3528836,3528616,3528169	
chr16	5807061	5809472	5807160	5808828	+	VPS28	Cre16.g678100.t1.2		5807061,5807339,5807747,5808256,5808615	5807272,5807478,5807859,5808355,5809472	Component of the ESCRT-I protein complex, involved in ubiquitin-mediated internalization of proteins into multi-vesicular bodies (late endosomes); expressed Protein. Similar to VPS28, a component of the ESCRT-I protein complex, involved in ubiquitin-mediated internalization of proteins into multi-vesicular bodies (late endosomes)
chr16	7019656	7022067	7019767	7021735	+	Cre16.g678101.t1.1	Cre16.g678101.t1.1		7019656,7020392,7021121,7021429	7020224,7020699,7021210,7022067	
chr16	5805025	5806870	5805803	5806741	-	Cre16.g678150.t1.2	Cre16.g678150.t1.2		5806678,5806405,5806145,5805025	5806870,5806551,5806187,5805883	
chr16	5800365	5804970	5802028	5804731	-	Cre16.g678200.t1.1	Cre16.g678200.t1.1		5804602,5804404,5804121,5803879,5803641,5800365	5804970,5804441,5804220,5803965,5803683,5803359	
chr16	5800365	5804970	5802028	5804731	-	Cre16.g678200.t2.1	Cre16.g678200.t2.1		5804602,5804404,5804121,5803879,5803641,5803374,5800365	5804970,5804441,5804220,5803965,5803683,5803465,5803243	
chr16	7022126	7026889	7022186	7026405	+	Cre16.g678213.t1.1	Cre16.g678213.t1.1		7022126,7022451,7022712,7022981,7023675,7024077,7025402,7025837,7026264	7022367,7022513,7022794,7023073,7023772,7024176,7025570,7025904,7026889	
chr16	5793165	5798000	5794838	5797287	-	Cre16.g678250.t1.2	Cre16.g678250.t1.2		5797092,5796641,5793165	5798000,5796838,5796422	
chr16	5787531	5793162	5787984	5792150	+	Cre16.g678300.t1.1	Cre16.g678300.t1.1		5787531,5788191,5790275,5791291,5791799	5788101,5790125,5791128,5791609,5793162	
chr16	7026936	7029697	7026943	7029515	+	Cre16.g678325.t1.1	Cre16.g678325.t1.1		7026936,7027076,7027380,7027766,7028245,7028894,7029287	7027006,7027232,7027533,7028026,7028703,7029011,7029697	
chr16	5782701	5786978	5782834	5786183	+	CAM19	Cre16.g678350.t1.2		5782701,5783210,5783578,5784772,5785083,5785487,5786103	5782901,5783334,5784455,5784868,5785159,5785686,5786978	
chr16	5780221	5782632	5780302	5782526	+	Cre16.g678400.t1.1	Cre16.g678400.t1.1		5780221,5780742,5781555	5780416,5781228,5782632	
chr16	7029700	7035865	7030326	7035568	-	Cre16.g678437.t1.1	Cre16.g678437.t1.1		7035849,7035393,7035077,7034845,7034403,7034122,7033807,7033332,7033009,7032657,7032184,7031807,7031408,7031070,7030701,7029700	7035865,7035581,7035201,7034912,7034507,7034164,7033877,7033560,7033063,7032769,7032408,7031872,7031539,7031188,7030894,7030559	
chr16	5776355	5780111	5777331	5779958	-	Cre16.g678450.t1.1	Cre16.g678450.t1.1		5779607,5779360,5778893,5778474,5778311,5778046,5777738,5776355	5780111,5779458,5778999,5778618,5778380,5778156,5777859,5777550	
chr16	3530844	3534088	3531030	3533571	-	Cre16.g678452.t1.1	Cre16.g678452.t1.1		3533807,3533562,3533231,3532716,3532373,3531992,3530844	3534088,3533682,3533289,3532958,3532498,3532192,3531700	
chr16	7035929	7038825	7036152	7038345	-	Cre16.g678549.t1.1	Cre16.g678549.t1.1		7038334,7038167,7037765,7037357,7036878,7036640,7035929	7038825,7038238,7037955,7037544,7037098,7036676,7036485	
chr16	5757381	5764139	5758173	5761884	+	Cre16.g678550.t1.1	Cre16.g678550.t1.1		5757381,5758381,5758503,5758838,5759659,5760888	5758250,5758437,5758550,5759480,5760681,5764139	
chr16	5764241	5776300	5765412	5776228	-	CYG34	Cre16.g678551.t1.1		5776122,5770067,5768390,5768038,5767807,5767029,5766737,5766444,5766022,5765581,5764241	5776300,5775945,5769802,5768112,5767825,5767513,5766745,5766488,5766207,5765835,5765463	C-terminal domain similar to membrane guanylyl cyclase OlGC7 [Oryzias latipes]
chr16	5751661	5757332	5751928	5756129	+	Cre16.g678600.t1.2	Cre16.g678600.t1.2		5751661,5753028,5753600,5753922,5754741,5755099,5755681,5755954	5752638,5753209,5753664,5754003,5754868,5755242,5755814,5757332	
chr16	5748161	5751612	5748495	5750877	+	Cre16.g678650.t1.2	Cre16.g678650.t1.2		5748161,5749133,5749682,5750088,5750350,5750847	5748980,5749280,5749804,5750190,5750570,5751612	
chr16	7039010	7042255	7039483	7042201	-	Cre16.g678661.t1.1	Cre16.g678661.t1.1		7042127,7041987,7041674,7040884,7040214,7039010	7042255,7042064,7041864,7040936,7040510,7039963	
chr16	5740641	5745632	5741376	5743823	+	Cre16.g678700.t1.2	Cre16.g678700.t1.2		5740641,5741815,5742227	5741571,5742012,5745632	
chr16	5736331	5740572	5736410	5739811	+	Cre16.g678750.t1.2	Cre16.g678750.t1.2		5736331,5736736,5737258,5737598,5737946,5738303,5738820,5739164,5739666	5736578,5736975,5737348,5737653,5738055,5738429,5738911,5739280,5740572	
chr16	7046286	7049221	7046663	7048853	+	BSD2	Cre16.g678773.t1.1		7046286,7047358,7048190,7048565	7047190,7048018,7048336,7049221	NAD(P)-dependent 3-beta hydroxysteroid dehydrogenase/isomerase
chr16	3534199	3546081	3534715	3544082	+	Cre16.g678808.t1.1	Cre16.g678808.t1.1		3534199,3534708,3534964,3535114,3535292,3535928,3536325,3536793,3537108,3537440,3537857,3538239,3538479,3538877,3539280,3539541,3539903,3540364,3540778,3541171,3541437,3541826,3542800,3543160,3543580,3543996	3534400,3534853,3535015,3535180,3535689,3536085,3536465,3536864,3537235,3537653,3538057,3538253,3538657,3539007,3539355,3539661,3540076,3540544,3540959,3541272,3541651,3542505,3542900,3543285,3543784,3546081	
chr16	5729345	5733720	5729957	5733597	-	Cre16.g678850.t1.1	Cre16.g678850.t1.1		5733507,5733264,5732896,5732265,5731868,5731627,5730755,5729345	5733720,5733329,5733009,5732709,5732025,5731705,5731404,5730509	
chr16	5733821	5736271	5733870	5735835	+	PSBP2	Cre16.g678851.t1.1		5733821,5734432,5734959,5735305,5735720	5734192,5734566,5735101,5735447,5736271	shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OEC23, 23 kDa subunit of oxygen evolving complex : PMID: 3468511); orthologous to At2g28605; targeted to thylakoid lumen by TAT pathway
chr16	7049656	7052097	7050253	7050677	+	Cre16.g678885.t1.1	Cre16.g678885.t1.1		7049656,7049936,7050520	7049824,7050273,7052097	
chr16	5723421	5727567	5723641	5725462	+	HKR6	Cre16.g678900.t1.2		5723421,5724044,5724257,5724601	5723794,5724133,5724457,5727567	contains only the signal receiver domain
chr16	7058170	7064865	7058691	7064379	-	Cre16.g678997.t1.1	Cre16.g678997.t1.1		7064164,7063406,7063052,7062438,7062094,7061777,7061385,7060846,7060553,7060181,7059599,7059252,7059060,7058170	7064865,7063814,7063201,7062775,7062250,7061929,7061453,7061039,7060670,7060271,7059999,7059344,7059101,7058802	
chr16	7058170	7064720	7058691	7064379	-	Cre16.g678997.t2.1	Cre16.g678997.t2.1		7064164,7063406,7063052,7062438,7062094,7061777,7061385,7060846,7060553,7060181,7059599,7059252,7059060,7058170	7064720,7063814,7063201,7062775,7062250,7061929,7061453,7061039,7060670,7060271,7059999,7059344,7059101,7058802	
chr16	5688168	5692420	5688606	5692267	-	Cre16.g679050.t1.2	Cre16.g679050.t1.2		5692255,5692086,5691749,5691386,5691290,5691098,5690841,5690645,5688168	5692420,5692192,5692007,5691687,5691329,5691221,5691028,5690783,5690585	
chr16	5688372	5692420	5688606	5692267	-	Cre16.g679050.t2.1	Cre16.g679050.t2.1		5692255,5692086,5691749,5691386,5691290,5691098,5690841,5690645,5688372	5692420,5692192,5692007,5691687,5691329,5691221,5691028,5690783,5690585	
chr16	5717881	5723272	5719888	5721808	+	Cre16.g679051.t1.1	Cre16.g679051.t1.1		5717881,5718916,5719168,5719496,5719831,5720249,5720581,5721264,5721651	5718548,5719037,5719212,5719504,5719931,5720433,5720718,5721322,5723272	
chr16	7065130	7067845	7065882	7067435	-	YEE3	Cre16.g679109.t1.1		7067775,7066986,7066572,7065130	7067845,7067468,7066788,7066398	Contains 2 DUF395 domains, found in YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains seve
chr16	5674147	5678768	5674258	5677798	+	Cre16.g679150.t1.2	Cre16.g679150.t1.2		5674147,5674536,5674828,5675087,5675557,5676176,5676603,5677019,5677419	5674369,5674650,5674883,5675143,5675837,5676365,5676751,5677159,5678768	
chr16	5680510	5683862	5680663	5683628	+	Cre16.g679151.t1.1	Cre16.g679151.t1.1		5680510,5680738,5680923,5681243,5681601,5681709,5681902,5682147,5682345	5680675,5680844,5681181,5681544,5681640,5681832,5682089,5682285,5683862	
chr16	5683891	5685191	5684340	5684947	-	Cre16.g679152.t1.1	Cre16.g679152.t1.1		5683891	5685191	
chr16	3547186	3550586	3547307	3549974	+	Cre16.g679164.t1.1	Cre16.g679164.t1.1		3547186,3547738,3548175,3548403,3548761,3549160,3549595,3549920	3547421,3547815,3548274,3548540,3548873,3549277,3549695,3550586	
chr16	5662301	5673096	5662967	5672987	-	PEX1	Cre16.g679200.t1.1		5672940,5672466,5672025,5671535,5668194,5667724,5667179,5666696,5666300,5665581,5665171,5664889,5664342,5663858,5662301	5673096,5672599,5672206,5671660,5671089,5667825,5667294,5666968,5666454,5665992,5665379,5665049,5664526,5663942,5663521	Putative peroxisome biogenesis protein, possibly a vesicle-fusing ATPase; identified from study on acclimation to changing CO2 concentrations and light intensities by Yamano et al. 28 [PMID: 18322145]
chr16	7067940	7071375	7068743	7071132	-	ANK27	Cre16.g679221.t1.1		7071123,7070918,7070729,7070482,7070115,7069722,7069522,7069258,7067940	7071375,7071022,7070827,7070580,7070216,7069820,7069569,7069308,7069097	Contains 6 ankyrin repeats; ankyrin repeats fold into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90 degree angle
chr16	5660197	5662226	5660371	5661627	+	ELI1	Cre16.g679250.t1.2		5660197,5660916,5661523	5660582,5661131,5662226	belongs to chlorophyll A-B binding protein superfamily
chr16	5658478	5660062	5659028	5659933	-	CGL139	Cre16.g679300.t1.2		5659837,5659359,5658478	5660062,5659611,5659105	
chr16	7084510	7087515	7084978	7087392	-	Cre16.g679333.t1.1	Cre16.g679333.t1.1		7087283,7086883,7086624,7086354,7086025,7085692,7085341,7084510	7087515,7087058,7086687,7086381,7086125,7085782,7085419,7085023	
chr16	5655757	5658458	5656234	5658167	+	Cre16.g679350.t1.1	Cre16.g679350.t1.1		5655757,5656154,5656887,5657231,5657660,5658032	5655966,5656705,5656990,5657339,5657767,5658458	
chr16	5642307	5655684	5643208	5655305	+	Cre16.g679400.t1.1	Cre16.g679400.t1.1		5642307,5642478,5643148,5643460,5643743,5645002,5645593,5645970,5646351,5646572,5646955,5647497,5647904,5648592,5648988,5649605,5650057,5650386,5650888,5651148,5651449,5652137,5652555,5652898,5654874	5642404,5642557,5643238,5643528,5644748,5645264,5645652,5646095,5646404,5646778,5647264,5647698,5648297,5648702,5649284,5649652,5650160,5650492,5650985,5651302,5651929,5652226,5652656,5654602,5655684	
chr16	7088011	7090525	7088476	7090415	-	FAS6	Cre16.g679445.t1.1		7090357,7089942,7089588,7089147,7088885,7088011	7090525,7090015,7089780,7089237,7088963,7088689	Similar to putative cyanobacterial secreted and surface proteins [PMID: 7925267]; contains 1 FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular (by homology)
chr16	5639707	5642255	5639848	5641708	+	Cre16.g679450.t1.2	Cre16.g679450.t1.2		5639707,5639993,5640184,5640599,5641223,5641618	5639916,5640046,5640289,5640724,5641357,5642255	
chr16	5637061	5639576	5638115	5639473	-	NUOB8	Cre16.g679500.t1.2		5639429,5639299,5639122,5638809,5637061	5639576,5639340,5639228,5638908,5638128	NADH:ubiquinone oxidoreductase (Complex I) B8 subunit, mitochondrial; [=NDUFA2 subunit]; gi 34328790 gb AAQ63699.1  [PMID: 15450959; PMID: 15710684]
chr16	3550850	3553845	3551069	3553287	-	CSB60	Cre16.g679520.t1.1		3553252,3552659,3551503,3551308,3550850	3553845,3552753,3552011,3551418,3551192	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr16	5634544	5637058	5634671	5637033	+	FAP277	Cre16.g679550.t1.1		5634544,5635112,5635718,5636022,5636311,5636705,5637021	5634846,5635454,5635783,5636127,5636433,5636878,5637058	Flagellar Associated Protein similar to protease inhibitor; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr16	7091279	7093905	7091777	7093834	-	FAS5	Cre16.g679557.t1.1		7093770,7093382,7093173,7092916,7092644,7092419,7092122,7091279	7093905,7093432,7093231,7093008,7092758,7092509,7092200,7091876	Protein contains the fasciclin FAS1 domain (= BIgH3 domain), which is an extracellular module of about 140 amino acid residues; it has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals; similar to
chr16	5630828	5634406	5631362	5634324	-	Cre16.g679600.t1.2	Cre16.g679600.t1.2		5634200,5634082,5633810,5633637,5633034,5632477,5632050,5630828	5634406,5634122,5633939,5633695,5633116,5632540,5632166,5631632	
chr16	5624447	5630776	5625131	5630585	-	Cre16.g679650.t1.1	Cre16.g679650.t1.1		5630163,5629669,5627945,5627670,5627382,5626958,5625794,5625448,5624447	5630776,5630029,5629441,5627774,5627450,5627065,5626390,5625545,5625285	
chr16	7094296	7096035	7094475	7095436	+	CMS1	Cre16.g679669.t1.1		7094296	7096035	4-diphosphocytidyl-2C-methyl-D-erythritol synthase (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase) (MEP cytidylyltransferase) (MCT) (ispD) (ygbP), chloroplast precursor
chr16	5617973	5624396	5618728	5624092	-	Cre16.g679700.t1.1	Cre16.g679700.t1.1		5624086,5623413,5622753,5622126,5621454,5620956,5620241,5619857,5617973	5624396,5623707,5622922,5622200,5621680,5621069,5620778,5619931,5619316	
chr16	5614565	5617575	5614667	5617230	+	Cre16.g679750.t1.2	Cre16.g679750.t1.2		5614565,5615031,5615376,5615625,5615766,5616075,5616470,5616721,5616932	5614682,5615135,5615420,5615633,5615862,5616232,5616574,5616773,5617575	
chr16	7096101	7100695	7096499	7100553	-	Cre16.g679781.t1.1	Cre16.g679781.t1.1		7100444,7100112,7099828,7099585,7099363,7099121,7098893,7098714,7098443,7098070,7097875,7097629,7096910,7096101	7100695,7100260,7099901,7099626,7099403,7099227,7098928,7098762,7098497,7098253,7097934,7097747,7097130,7096663	
chr16	5610767	5614518	5610970	5613570	+	Cre16.g679800.t1.2	Cre16.g679800.t1.2		5610767,5611197,5611583,5611923,5612173,5612424,5612843,5613210,5613419	5610985,5611301,5611627,5611931,5612269,5612581,5612950,5613262,5614518	
chr16	5600117	5610498	5600764	5609362	+	CYG35	Cre16.g679850.t1.1		5600117,5601121,5603222,5603588,5605571,5607160,5607373,5608027,5608278,5608527,5608879,5609314	5600804,5603012,5603313,5605337,5606839,5607178,5607728,5608035,5608322,5608712,5609133,5610498	similar to membrane guanylyl cyclase OlGC7 [Danio rerio]
chr16	3554151	3558715	3554639	3558552	-	Cre16.g679876.t1.1	Cre16.g679876.t1.1		3558549,3558147,3557798,3557431,3557102,3556573,3556116,3555845,3555504,3554911,3554151	3558715,3558392,3557908,3557501,3557240,3556622,3556433,3556006,3555588,3555210,3554741	
chr16	3554151	3558715	3554430	3558552	-	Cre16.g679876.t2.1	Cre16.g679876.t2.1		3558549,3558147,3557798,3557431,3557102,3556573,3556116,3555845,3555504,3554911,3554673,3554151	3558715,3558392,3557908,3557501,3557240,3556622,3556433,3556006,3555588,3555210,3554741,3554445	
chr16	7100796	7105667	7100894	7104586	+	Cre16.g679893.t1.1	Cre16.g679893.t1.1		7100796,7101087,7101784,7102394,7102661,7102882,7103136,7103332,7103637,7103910,7104448	7100940,7101658,7102256,7102502,7102741,7103016,7103197,7103480,7103649,7104141,7105667	
chr16	5588617	5599474	5588872	5598669	+	XRN3	Cre16.g679900.t1.2		5588617,5589142,5589460,5589740,5590237,5590538,5590922,5591381,5591773,5592141,5592606,5593023,5593856,5594191,5595159,5595699,5596083,5596496,5596975,5597406,5597802	5588910,5589262,5589504,5589842,5590364,5590678,5591128,5591557,5591885,5592342,5592792,5593534,5594001,5594260,5595379,5595789,5596193,5596577,5597088,5597542,5599474	Putative homologue of yeast 5'-3' exoribonucleases Xrn1p(cytoplasmic) and Rat1p (nuclear).
chr16	5583241	5588513	5584107	5588370	-	RFC3	Cre16.g679950.t1.2		5588349,5588202,5587880,5587656,5587142,5586593,5586102,5585682,5585253,5584851,5584523,5583241	5588513,5588267,5587990,5587688,5587246,5586655,5586221,5585744,5585353,5584995,5584627,5584245	Homologous to eukaryotic RFC3 (DNA replication factor C complex subunit 3); accessory protein of DNA polymerase
chr16	5579347	5583238	5579430	5582655	+	ATP5	Cre16.g680000.t1.2		5579347,5579579,5579743,5580017,5580331,5581686,5582088,5582634	5579496,5579638,5579853,5580155,5580443,5581772,5582192,5583238	Mitochondrial ATP synthase, H+ transporting, subunit 5, Oligomycin sensitivity conferral protein (OSCP) or O subunit. Component of the peripheral stalk that links F1 and F0 domains. Homologous to the bacterial ATP synthase delta subunit (but not to the eukaryotic delta subunit of the central stalk). Gene from various eukaryotics named either ATP5 or ATPO [PMID: 16045926]
chr16	7105716	7108314	7106433	7107817	+	Cre16.g680005.t1.1	Cre16.g680005.t1.1		7105716,7106377,7106709,7106984,7107288,7107732	7106270,7106548,7106823,7107037,7107476,7108314	
chr16	5575767	5579226	5576312	5578826	-	DRT2	Cre16.g680050.t1.1		5578723,5578508,5578199,5575767	5579226,5578601,5578321,5577942	DRAP1-like protein; Dr1-associated corepressor (Dr1-associated protein 1)
chr16	5573141	5575706	5574119	5575595	-	Cre16.g680100.t1.2	Cre16.g680100.t1.2		5575428,5574915,5574486,5573141	5575706,5575062,5574641,5574194	
chr16	7108706	7113607	7108970	7112862	+	Cre16.g680117.t1.1	Cre16.g680117.t1.1		7108706,7109171,7109524,7109803,7110054,7110512,7110819,7111167,7111836,7112247,7112532	7108973,7109260,7109643,7109890,7110157,7110625,7110972,7111627,7112089,7112415,7113607	
chr16	5571281	5573086	5571762	5572675	-	Cre16.g680131.t1.2	Cre16.g680131.t1.2		5571281	5573086	
chr16	5558487	5570514	5558603	5569474	+	Cre16.g680150.t1.1	Cre16.g680150.t1.1		5558487,5558835,5559105,5562955,5563194,5565479,5566003,5568205	5558693,5558903,5562818,5563039,5565250,5565685,5568051,5570514	
chr16	5551391	5558346	5552664	5558171	-	Cre16.g680200.t1.1	Cre16.g680200.t1.1		5558078,5557607,5557141,5556769,5556412,5554829,5554582,5553942,5553626,5553335,5553083,5551391	5558346,5557755,5557235,5556874,5556461,5556275,5554687,5554073,5553689,5553477,5553124,5552826	
chr16	7116456	7117797	7116607	7117209	+	SEC61G	Cre16.g680230.t1.1		7116456,7116794,7117179	7116701,7116876,7117797	Expressed Protein. Conserved protein similar to SEC61 gamma subunit involved in ER protein translocation.  Early zygote expressed protein activated upon fus mating [PMID: 18487630]
chr16	3558816	3563056	3558936	3562299	+	Cre16.g680232.t1.1	Cre16.g680232.t1.1		3558816,3559053,3559173,3559504,3559838,3560089,3560408,3561256,3561504,3562191	3558960,3559108,3559214,3559600,3559953,3560281,3561028,3561354,3561845,3563056	
chr16	5548307	5551388	5548386	5550979	+	Cre16.g680250.t1.2	Cre16.g680250.t1.2		5548307,5548847,5549113,5549949,5550165,5550603,5550829	5548619,5548982,5549320,5550046,5550418,5550699,5551388	
chr16	5545580	5548206	5545692	5548155	-	Cre16.g680300.t1.2	Cre16.g680300.t1.2		5548016,5547707,5547490,5547261,5546993,5546583,5546193,5545911,5545580	5548206,5547761,5547559,5547325,5547095,5546831,5546358,5545997,5545814	
chr16	7117820	7124105	7119298	7123932	-	FAP110	Cre16.g680342.t1.1		7123821,7123604,7123322,7122903,7122570,7122016,7121631,7121282,7121013,7120592,7120370,7120082,7119842,7119628,7117820	7124105,7123687,7123411,7123089,7122676,7122159,7121817,7121398,7121164,7120690,7120463,7120236,7119898,7119732,7119367	
chr16	5542667	5545578	5542904	5544445	+	Cre16.g680350.t1.2	Cre16.g680350.t1.2		5542667,5543319,5543816,5544059,5544339	5542994,5543616,5543939,5544154,5545578	
chr16	5539241	5542566	5540232	5541521	-	Cre16.g680400.t1.1	Cre16.g680400.t1.1		5542200,5540388,5539241	5542566,5541829,5540232	
chr16	5528863	5539228	5529002	5538712	+	Cre16.g680450.t1.1	Cre16.g680450.t1.1		5528863,5529166,5529460,5529803,5530392,5530689,5530941,5531344,5531784,5532340,5532941,5533275,5533757,5534106,5534593,5535055,5535365,5535645,5536032,5536605,5537003,5537336,5538562	5529082,5529220,5529540,5530025,5530540,5530721,5531132,5531471,5531977,5532549,5533065,5533382,5533875,5534211,5534832,5535195,5535485,5535775,5536159,5536807,5537148,5537512,5539228	
chr16	7124556	7127877	7124767	7127010	+	Cre16.g680454.t1.1	Cre16.g680454.t1.1		7124556,7125006,7125302,7125644,7125936,7126275,7126603,7126908	7124821,7125120,7125434,7125716,7126067,7126403,7126668,7127877	
chr16	5520696	5528371	5521372	5528121	-	EFH10	Cre16.g680500.t1.1		5528006,5527638,5527360,5526999,5526696,5526160,5525865,5525599,5520696	5528371,5527831,5527434,5527108,5526840,5526534,5525966,5525667,5525434	
chr16	5518932	5519931	5519139	5519837	-	Cre16.g680550.t1.2	Cre16.g680550.t1.2		5519773,5519494,5518932	5519931,5519636,5519322	
chr16	7127900	7133065	7129684	7132901	-	Cre16.g680566.t1.1	Cre16.g680566.t1.1		7132792,7132630,7131841,7131323,7130956,7130467,7130062,7127900	7133065,7132718,7132071,7131575,7131080,7130720,7130236,7129822	
chr16	3563126	3566314	3563213	3565148	+	Cre16.g680588.t1.1	Cre16.g680588.t1.1		3563126,3563537,3563745,3564524,3565037	3563327,3563662,3564333,3564771,3566314	
chr16	5511902	5518841	5511999	5516015	+	Cre16.g680600.t1.2	Cre16.g680600.t1.2		5511902,5512580,5513827,5514906,5515640	5512133,5513420,5514651,5515370,5518841	
chr16	5505802	5511853	5506033	5511380	+	Cre16.g680650.t1.1	Cre16.g680650.t1.1		5505802,5506030,5506262,5506644,5507142,5509663,5509987,5510238,5510602	5505903,5506129,5506481,5506931,5509456,5509770,5510061,5510392,5511853	
chr16	7133586	7143847	7133685	7143135	+	TRZ2	Cre16.g680678.t1.1		7133586,7134011,7134490,7135483,7139095,7141310,7141591,7141808,7142523,7142861	7133790,7134194,7134608,7138890,7141095,7141429,7141672,7142266,7142685,7143847	RNase Z-like protein, beta-lactamase family
chr16	5500612	5503585	5501347	5503496	-	Cre16.g680700.t1.2	Cre16.g680700.t1.2		5503367,5503110,5502764,5502627,5502391,5502040,5501686,5500612	5503585,5503192,5502885,5502690,5502493,5502194,5501812,5501431	
chr16	5484761	5488631	5485574	5488209	-	Cre16.g680750.t1.1	Cre16.g680750.t1.1		5487964,5487629,5487266,5487019,5484761	5488631,5487740,5487424,5487056,5486547	
chr16	7143896	7149713	7144589	7148752	+	Cre16.g680790.t1.1	Cre16.g680790.t1.1		7143896,7144335,7145308	7144176,7144907,7149713	
chr16	5482176	5484591	5482437	5484333	-	CGL155	Cre16.g680800.t1.2		5484169,5483908,5483609,5483379,5482176	5484591,5484007,5483746,5483416,5483248	
chr16	5477202	5482173	5477353	5481881	+	MDA1	Cre16.g680850.t1.1		5477202,5477555,5477945,5479021,5480086	5477428,5477629,5478900,5479743,5482173	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr16	5463885	5477091	5464684	5476878	-	RPB1	Cre16.g680900.t1.2		5476788,5476463,5476085,5475280,5474816,5474442,5474045,5473726,5473402,5473014,5472660,5472275,5472042,5471630,5471217,5470936,5470658,5470280,5470021,5469670,5469280,5468921,5468597,5468286,5467988,5467722,5467348,5467042,5466592,5466317,5466023,5465816,5465621,5465467,5465256,5465117,5463885	5477091,5476726,5476162,5475411,5474985,5474599,5474276,5473867,5473526,5473224,5472854,5472517,5472137,5471823,5471390,5471083,5470768,5470431,5470155,5469781,5469485,5469087,5468786,5468406,5468173,5467807,5467467,5467180,5466872,5466400,5466106,5465899,5465693,5465508,5465329,5465147,5464993	EC 2.7.7.6
chr16	7150116	7157137	7150392	7156602	+	Cre16.g680902.t1.1	Cre16.g680902.t1.1		7150116,7151049,7151282,7151530,7151861,7152069,7152344,7152506,7152716,7153000,7153217,7153424,7153704,7153856,7154219,7154396,7154592,7154814,7155077,7155358,7155804,7156025,7156436	7150492,7151166,7151384,7151635,7151934,7152104,7152373,7152583,7152860,7153088,7153285,7153547,7153740,7154068,7154314,7154433,7154674,7154939,7155174,7155525,7155873,7156113,7157137	
chr16	3566320	3571815	3567064	3571684	-	Cre16.g680944.t1.1	Cre16.g680944.t1.1		3571609,3571067,3570621,3569974,3569544,3568698,3568225,3567486,3566320	3571815,3571186,3570818,3570165,3569651,3569157,3568501,3568008,3567166	
chr16	5459222	5463219	5459605	5461290	+	Cre16.g680950.t1.1	Cre16.g680950.t1.1		5459222,5460036,5460341,5460918	5459616,5460213,5460433,5463219	
chr16	5449522	5452212	5449791	5450976	+	Cre16.g681000.t1.1	Cre16.g681000.t1.1		5449522,5449901,5450080,5450461,5450700	5449807,5449950,5450340,5450511,5452212	
chr16	7157140	7164235	7158560	7163440	-	Cre16.g681014.t1.1	Cre16.g681014.t1.1		7159668,7159347,7158836,7157140	7164235,7159498,7159182,7158642	
chr16	5447326	5449421	5447720	5449356	-	Cre16.g681050.t1.1	Cre16.g681050.t1.1		5449308,5447326	5449421,5448902	
chr16	5444202	5446631	5444464	5445791	-	Cre16.g681051.t1.1	Cre16.g681051.t1.1		5446297,5444202	5446631,5445834	
chr16	5435332	5444163	5436526	5442938	+	Cre16.g681100.t1.1	Cre16.g681100.t1.1		5435332,5436040,5436469,5437040,5437424,5440350,5440668,5442327	5435636,5436116,5436600,5437101,5437566,5440614,5442221,5444163	
chr16	7164307	7167665	7164780	7167293	-	Cre16.g681126.t1.1	Cre16.g681126.t1.1		7167053,7166731,7166335,7165928,7165594,7165154,7164307	7167665,7166868,7166504,7166033,7165706,7165286,7164966	
chr16	5428692	5430293	5428847	5429451	+	Cre16.g681200.t1.2	Cre16.g681200.t1.2		5428692,5429160,5429382	5429021,5429273,5430293	
chr16	7167868	7173205	7168451	7173095	-	Cre16.g681238.t1.1	Cre16.g681238.t1.1		7173073,7172326,7171903,7171462,7171099,7170852,7170700,7170488,7170120,7169781,7169501,7169210,7168818,7167868	7173205,7172886,7172072,7171650,7171241,7170921,7170762,7170549,7170258,7169878,7169592,7169334,7168931,7168613	
chr16	5426582	5428309	5426634	5427196	+	Cre16.g681250.t1.1	Cre16.g681250.t1.1		5426582,5427057	5426717,5428309	
chr16	5421362	5426533	5422739	5426162	+	Cre16.g681251.t1.2	Cre16.g681251.t1.2		5421362,5422363,5423062,5423428,5423936,5424302,5424592,5424940,5425296,5425853	5421844,5422772,5423236,5423495,5424004,5424483,5424854,5425034,5425493,5426533	
chr16	3571934	3574619	3572105	3574340	+	MOT12	Cre16.g681301.t1.1		3571934,3572551,3572867,3573593,3573883	3572234,3572702,3573409,3573721,3574619	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr16	5415117	5416851	5415804	5416596	-	Cre16.g681350.t1.1	Cre16.g681350.t1.1		5416422,5416168,5415117	5416851,5416269,5415996	
chr16	5401897	5411321	5404874	5411028	-	Cre16.g681351.t1.2	Cre16.g681351.t1.2		5411158,5410918,5410492,5410100,5401897	5411321,5411069,5410735,5410346,5409733	
chr16	5411572	5414954	5412154	5413773	+	Cre16.g681352.t1.1	Cre16.g681352.t1.1		5411572,5412607,5413102,5413591	5412187,5412668,5413163,5414954	
chr16	5417787	5419781	5418872	5419195	-	CSB61	Cre16.g681353.t1.1		5419340,5419111,5417787	5419781,5419221,5418995	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr16	7173376	7179486	7173571	7177893	+	Cre16.g681354.t1.1	Cre16.g681354.t1.1		7173376,7174253,7174747	7173920,7174324,7179486	
chr16	5389836	5400461	5392080	5400200	-	Cre16.g681400.t1.1	Cre16.g681400.t1.1		5400099,5399603,5398017,5389836	5400461,5399843,5398278,5397794	
chr16	5383191	5389121	5384167	5388941	-	ANK6	Cre16.g681450.t1.2		5388665,5388480,5388297,5388131,5387695,5387343,5385513,5385042,5384789,5384557,5383191	5389121,5388551,5388362,5388175,5387891,5387463,5387012,5385317,5384887,5384645,5384369	protein of unknown function with ankyrin repeats
chr16	7180236	7183767	7180392	7183750	+	Cre16.g681466.t1.1	Cre16.g681466.t1.1		7180236,7183691	7183153,7183767	
chr16	5380320	5383141	5380912	5383092	-	Cre16.g681500.t1.2	Cre16.g681500.t1.2		5383055,5382601,5382405,5382168,5381730,5381188,5380320	5383141,5382805,5382486,5382205,5381778,5381279,5381003	
chr16	5374763	5380161	5375549	5379081	-	CSV13	Cre16.g681550.t1.1		5379614,5379450,5379033,5378565,5374763	5380161,5379509,5379118,5378821,5378340	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr16	7183770	7190825	7183924	7190678	-	APC8	Cre16.g681578.t1.1		7190363,7190030,7189581,7189054,7188713,7188411,7187961,7187286,7187008,7186541,7186026,7185640,7185265,7184748,7184224,7183770	7190825,7190130,7189917,7189314,7188772,7188473,7188098,7187409,7187066,7186648,7186127,7185714,7185336,7185026,7184565,7183933	Subunit of anaphase promoting complex. Homolog of CDC23. ts-lethal mutants arrest with 2C DNA content and fail to initiate cleavage plane and complete mitosis (PMID 29743196)
chr16	5366717	5374481	5369113	5373970	-	CSV14	Cre16.g681600.t1.1		5373858,5373738,5373295,5372890,5372660,5371659,5371071,5366717	5374481,5373787,5373541,5373020,5372698,5372436,5371449,5370896	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr16	3574666	3581267	3574799	3580710	+	Cre16.g681657.t1.1	Cre16.g681657.t1.1		3574666,3575094,3575464,3575995,3576360,3576576,3576807,3577039,3578765,3578967,3579228,3579647,3579962,3580209,3580427	3574939,3575321,3575754,3576156,3576445,3576650,3576894,3578572,3578836,3579056,3579418,3579808,3580070,3580270,3581267	
chr16	7190874	7194605	7191299	7194333	-	Cre16.g681690.t1.1	Cre16.g681690.t1.1		7192138,7191807,7190874	7194605,7191932,7191504	
chr16	5363606	5368338	5364089	5367942	-	NUOS4B	Cre16.g681700.t1.1		5367786,5366386,5366129,5365677,5365374,5365108,5364797,5364501,5363606	5368338,5366611,5366211,5365831,5365436,5365141,5364871,5364556,5364270	Related to NUOS4 encoding NADH:ubiquinone oxidoreductase (Complex I) 18 kD-like subunit (45% id.) [PMID: 15710684]
chr16	5363606	5366691	5364089	5366651	-	NUOS4B	Cre16.g681700.t2.1		5366386,5366129,5365677,5365374,5365108,5364797,5364501,5363606	5366691,5366211,5365831,5365436,5365141,5364871,5364556,5364270	Related to NUOS4 encoding NADH:ubiquinone oxidoreductase (Complex I) 18 kD-like subunit (45% id.) [PMID: 15710684]
chr16	5366741	5368338	5367773	5367942	-	NUOS4B	Cre16.g681700.t3.1		5366741	5368338	Related to NUOS4 encoding NADH:ubiquinone oxidoreductase (Complex I) 18 kD-like subunit (45% id.) [PMID: 15710684]
chr16	5351952	5363603	5352271	5362533	+	FAP381	Cre16.g681750.t1.1		5351952,5353002,5353478,5353650,5353869,5354179,5354525,5354924,5355107,5355437,5355739,5355995,5356403,5356779,5357148,5357506,5357868,5358165,5358459,5358714,5359079,5359389,5359691,5359853,5360087,5360378,5360722,5361066,5361294,5361591,5362073	5352409,5353170,5353501,5353705,5353998,5354294,5354630,5354964,5355276,5355514,5355869,5356224,5356522,5356988,5357276,5357679,5357972,5358288,5358514,5358829,5359106,5359497,5359704,5359908,5360144,5360449,5360876,5361117,5361356,5361811,5363603	Similar to Calcium-Transporting ATPase
chr16	5351952	5363603	5352271	5362890	+	FAP381	Cre16.g681750.t2.1		5351952,5353002,5353478,5353650,5353869,5354179,5354525,5354924,5355107,5355437,5355739,5355995,5356403,5356779,5357148,5357506,5357868,5358165,5358459,5358714,5359079,5359389,5359691,5359853,5360087,5360378,5360722,5361066,5361294,5361591,5362073,5362881	5352409,5353170,5353501,5353705,5353998,5354294,5354630,5354964,5355276,5355514,5355869,5356224,5356522,5356988,5357276,5357679,5357972,5358288,5358514,5358829,5359106,5359497,5359704,5359908,5360144,5360449,5360876,5361117,5361356,5361811,5362352,5363603	Similar to Calcium-Transporting ATPase
chr16	5348156	5351601	5348564	5351399	-	Cre16.g681800.t1.1	Cre16.g681800.t1.1		5351339,5350766,5350070,5349511,5348156	5351601,5351117,5350438,5349860,5349269	Or inositol-tetrakisphosphate 1-kinase.  Contains an Regulator of chromosome condensation, RCC1 domain
chr16	7195390	7206348	7195635	7205042	+	Cre16.g681802.t1.1	Cre16.g681802.t1.1		7195390,7195904,7196285,7196559,7197147,7197448,7197823,7197987,7198291,7198741,7199097,7199370,7199745,7200150,7200535,7200813,7201024,7201194,7201455,7201659,7201848,7202079,7202817,7203398,7203695,7204030,7204283,7204635,7204859	7195680,7196029,7196353,7196609,7197207,7197608,7197849,7198057,7198369,7198803,7199217,7199488,7199890,7200302,7200592,7200867,7201055,7201289,7201478,7201682,7201934,7202664,7203199,7203526,7203793,7204098,7204369,7204688,7206348	
chr16	5342173	5347901	5342857	5347659	-	Cre16.g681850.t1.2	Cre16.g681850.t1.2		5347558,5347334,5346922,5346580,5345956,5345426,5345140,5344758,5344355,5343886,5343630,5343156,5342173	5347901,5347442,5347013,5346679,5346052,5345491,5345200,5344887,5344520,5344018,5343747,5343254,5342953	
chr16	5337538	5341898	5337966	5341752	-	SECY1	Cre16.g681900.t1.2		5341236,5340782,5340380,5340006,5339640,5339355,5339040,5338720,5338303,5337538	5341898,5340895,5340439,5340204,5339775,5339400,5339150,5338800,5338527,5338065	Expressed Protein. Thylakoid membrane protein translocase. Involved in translocating plastid stromal proteins into the thylakoid lumen.
chr16	7206470	7215501	7207065	7214763	+	Cre16.g681914.t1.1	Cre16.g681914.t1.1		7206470,7206873,7207902,7211668,7213947,7214235,7214505	7206630,7207759,7211524,7213809,7214101,7214328,7215501	
chr16	5333134	5336532	5333672	5334645	+	Cre16.g682000.t1.1	Cre16.g682000.t1.1		5333134,5333660,5334500	5333277,5334298,5336532	
chr16	5336546	5337251	5336747	5337147	-	Cre16.g682001.t1.1	Cre16.g682001.t1.1		5336546	5337251	
chr16	3581270	3585115	3581571	3584689	-	Cre16.g682013.t1.1	Cre16.g682013.t1.1		3583974,3583511,3583105,3582653,3582133,3581270	3585115,3583800,3583307,3582827,3582391,3581876	
chr16	7215610	7224631	7215909	7223816	+	Cre16.g682026.t1.1	Cre16.g682026.t1.1		7215610,7217095,7223030,7223299,7223597	7216954,7222877,7223187,7223404,7224631	
chr16	5330322	5333083	5330457	5332923	+	Cre16.g682050.t1.1	Cre16.g682050.t1.1		5330322,5330875,5331298,5332610,5332923	5330673,5331007,5332357,5332707,5333083	
chr16	5330322	5331983	5330457	5331963	+	Cre16.g682050.t2.1	Cre16.g682050.t2.1		5330322,5330875,5331298	5330673,5331007,5331983	
chr16	5332032	5333083	5332055	5332923	+	Cre16.g682052.t1.1	Cre16.g682052.t1.1		5332032,5332610,5332923	5332357,5332707,5333083	
chr16	5326328	5330201	5326989	5330058	-	TDR1	Cre16.g682100.t1.2		5329920,5329522,5329171,5328712,5328424,5328163,5327814,5327403,5326328	5330201,5329599,5329261,5328764,5328477,5328245,5327958,5327475,5327084	
chr16	7224680	7231771	7224943	7231325	+	Cre16.g682138.t1.1	Cre16.g682138.t1.1		7224680,7226607,7229321,7230568,7230835,7231121	7226342,7229266,7230373,7230716,7230931,7231771	
chr16	5322620	5326151	5323002	5326092	-	Cre16.g682150.t1.2	Cre16.g682150.t1.2		5325888,5325627,5325366,5324886,5323756,5322620	5326151,5325747,5325397,5325158,5324640,5323626	
chr16	5320206	5322491	5320661	5322398	-	Cre16.g682200.t1.2	Cre16.g682200.t1.2		5322248,5321792,5321315,5320989,5320206	5322491,5321896,5321473,5321098,5320770	
chr16	5317822	5320203	5317893	5319666	+	Cre16.g682250.t1.1	Cre16.g682250.t1.1		5317822,5318162,5318427,5319402	5318014,5318259,5319167,5320203	
chr16	7231880	7238201	7231944	7237684	+	Cre16.g682251.t1.1	Cre16.g682251.t1.1		7231880,7233068,7233750,7235473	7232886,7233577,7235276,7238201	
chr16	5314224	5315051	5314406	5314941	-	RPS26	Cre16.g682300.t1.2		5314760,5314224	5315051,5314564	Cytosolic 40S small ribosomal subunit protein S26
chr16	5313485	5314171	5313878	5314098	-	Cre16.g682305.t1.2	Cre16.g682305.t1.2		5313485	5314171	
chr16	5306776	5313281	5307887	5313117	-	Cre16.g682350.t1.1	Cre16.g682350.t1.1		5312970,5312749,5312554,5312055,5311789,5311376,5310883,5310632,5310254,5310029,5309729,5309415,5309082,5308265,5306776	5313281,5312873,5312659,5312234,5311905,5311492,5311005,5310741,5310383,5310136,5309845,5309553,5309173,5308431,5307996	
chr16	5307046	5313281	5307996	5313117	-	Cre16.g682350.t2.1	Cre16.g682350.t2.1		5312970,5312749,5312554,5312055,5311789,5311376,5310883,5310632,5310254,5310029,5309729,5309415,5308488,5308265,5307046	5313281,5312873,5312659,5312234,5311905,5311492,5311005,5310741,5310383,5310136,5309845,5309553,5309173,5308431,5307996	
chr16	7238204	7241569	7238236	7241455	-	Cre16.g682363.t1.1	Cre16.g682363.t1.1		7241291,7240923,7240590,7240256,7239950,7239671,7239463,7239130,7238911,7238204	7241569,7241081,7240683,7240345,7240084,7239724,7239521,7239226,7238964,7238671	
chr16	3585346	3594684	3585554	3593980	+	CTP1	Cre16.g682369.t1.1		3585346,3585827,3586423,3586674,3587281,3587805,3588435,3588814,3589293,3589785,3590221,3590621,3590975,3591530,3592013,3592857,3593153,3593587	3585710,3585885,3586477,3586940,3587497,3588023,3588556,3588917,3589395,3589928,3590376,3590710,3591256,3591801,3592667,3592964,3593314,3594684	Heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein; copper-transporting P-type ATPase, related to AtRAN1 and AtHMA5 [PMID: 15710683]
chr16	5304484	5306491	5305134	5306406	-	Cre16.g682400.t1.2	Cre16.g682400.t1.2		5306176,5305675,5305378,5304484	5306491,5305825,5305467,5305206	
chr16	5296636	5302496	5297290	5301739	-	Cre16.g682450.t1.1	Cre16.g682450.t1.1		5302280,5301895,5301619,5300950,5300825,5300492,5300241,5299790,5299486,5299171,5298835,5298549,5296636	5302496,5302032,5301789,5301438,5300881,5300632,5300368,5299988,5299654,5299347,5299049,5298698,5298394	
chr16	5296636	5302496	5297290	5301739	-	Cre16.g682450.t2.1	Cre16.g682450.t2.1		5302280,5301895,5301619,5300950,5300825,5300492,5300241,5299790,5299486,5299171,5298835,5298549,5296636	5302496,5302032,5301789,5301438,5300881,5300632,5300368,5299988,5299654,5299332,5299049,5298698,5298394	
chr16	7241724	7246959	7242151	7246617	-	Cre16.g682475.t1.1	Cre16.g682475.t1.1		7246549,7246239,7245851,7245461,7244970,7244605,7244098,7243579,7243346,7243140,7242720,7241724	7246959,7246313,7246045,7245554,7245059,7244748,7244210,7243623,7243399,7243215,7242865,7242497	
chr16	5238092	5284423	5238726	5282452	+	Cre16.g682550.t1.1	Cre16.g682550.t1.1		5238092,5239144,5239694,5240110,5240357,5241447,5241754,5242036,5242706,5243015,5243378,5243729,5244172,5244613,5244879,5245191,5245642,5245913,5246122,5246338,5246622,5246823,5247440,5247862,5248353,5248707,5248998,5249278,5250307,5250678,5251036,5251454,5251883,5252240,5252703,5252934,5253293,5253618,5253933,5254213,5254647,5254975,5255350,5255694,5256159,5256459,5256777,5257050,5257426,5257782,5258226,5258636,5258875,5259204,5259594,5259962,5260398,5260756,5261054,5261345,5261859,5262184,5262490,5262781,5263154,5263722,5264289,5264987,5265239,5265559,5265836,5266177,5266430,5266697,5267204,5267729,5268029,5268409,5268935,5269263,5269597,5270016,5270351,5270638,5270911,5271535,5271884,5272323,5273751,5274125,5274525,5274989,5275287,5275714,5276033,5276596,5276811,5277333,5277569,5277901,5278289,5278594,5280248,5280432,5282100	5238949,5239500,5239913,5240265,5240474,5241537,5241889,5242193,5242851,5243110,5243501,5243874,5244299,5244686,5244914,5245253,5245755,5245982,5246222,5246443,5246671,5246965,5247640,5248128,5248515,5248895,5249066,5249385,5250496,5250853,5251271,5251679,5251995,5252409,5252788,5253049,5253382,5253744,5254031,5254393,5254809,5255206,5255489,5255856,5256236,5256602,5256860,5257217,5257639,5257990,5258465,5258746,5259039,5259384,5259739,5260206,5260596,5260836,5261198,5261739,5262028,5262313,5262644,5262857,5263590,5264004,5264782,5265070,5265365,5265703,5265985,5266264,5266557,5267031,5267563,5267886,5268195,5268812,5269102,5269392,5269886,5270178,5270438,5270764,5271345,5271718,5272117,5273600,5273995,5274350,5274836,5275095,5275521,5275794,5276431,5276675,5277165,5277400,5277653,5277991,5278386,5280054,5280307,5281939,5284423	
chr16	5240922	5284423	5241467	5282452	+	Cre16.g682550.t2.1	Cre16.g682550.t2.1		5240922,5241447,5241754,5242036,5242706,5243015,5243378,5243729,5244172,5244613,5244879,5245191,5245642,5245913,5246122,5246338,5246622,5246823,5247440,5247862,5248353,5248707,5248998,5249278,5250307,5250678,5251036,5251454,5251883,5252240,5252703,5252934,5253293,5253618,5253933,5254213,5254647,5254975,5255350,5255694,5256159,5256459,5256777,5257050,5257426,5257782,5258226,5258636,5258875,5259204,5259594,5259962,5260398,5260756,5261054,5261345,5261859,5262184,5262490,5262781,5263154,5263722,5264289,5264987,5265239,5265559,5265836,5266177,5266430,5266697,5267204,5267729,5268029,5268409,5268935,5269263,5269597,5270016,5270351,5270638,5270911,5271535,5271884,5272323,5273751,5274125,5274525,5274989,5275287,5275714,5276033,5276596,5276811,5277333,5277569,5277901,5278289,5278594,5280248,5280432,5282100	5241244,5241537,5241889,5242193,5242851,5243110,5243501,5243874,5244299,5244686,5244914,5245253,5245755,5245982,5246222,5246443,5246671,5246965,5247640,5248128,5248515,5248895,5249066,5249385,5250496,5250853,5251271,5251679,5251995,5252409,5252788,5253049,5253382,5253744,5254031,5254393,5254809,5255206,5255489,5255856,5256236,5256602,5256860,5257217,5257639,5257990,5258465,5258746,5259039,5259384,5259739,5260206,5260596,5260836,5261198,5261739,5262028,5262313,5262644,5262857,5263590,5264004,5264782,5265070,5265365,5265703,5265985,5266264,5266557,5267031,5267563,5267886,5268195,5268812,5269102,5269392,5269886,5270178,5270438,5270764,5271345,5271718,5272117,5273600,5273995,5274350,5274836,5275095,5275521,5275794,5276431,5276675,5277165,5277400,5277653,5277991,5278386,5280054,5280307,5281939,5284423	
chr16	5249792	5284423	5250317	5282452	+	Cre16.g682550.t3.1	Cre16.g682550.t3.1		5249792,5250307,5250678,5251036,5251454,5251883,5252240,5252703,5252934,5253293,5253618,5253933,5254213,5254647,5254975,5255350,5255694,5256159,5256459,5256777,5257050,5257426,5257782,5258226,5258636,5258875,5259204,5259594,5259962,5260398,5260756,5261054,5261345,5261859,5262184,5262490,5262781,5263154,5263722,5264289,5264987,5265239,5265559,5265836,5266177,5266430,5266697,5267204,5267729,5268029,5268409,5268935,5269263,5269597,5270016,5270351,5270638,5270911,5271535,5271884,5272323,5273751,5274125,5274525,5274989,5275287,5275714,5276033,5276596,5276811,5277333,5277569,5277901,5278289,5278594,5280248,5280432,5282100	5250074,5250496,5250853,5251271,5251679,5251995,5252409,5252788,5253049,5253382,5253744,5254031,5254393,5254809,5255206,5255489,5255856,5256236,5256602,5256860,5257217,5257639,5257990,5258465,5258746,5259039,5259384,5259739,5260206,5260596,5260836,5261198,5261739,5262028,5262313,5262644,5262857,5263590,5264004,5264782,5265070,5265365,5265703,5265985,5266264,5266557,5267031,5267563,5267886,5268195,5268812,5269102,5269392,5269886,5270178,5270438,5270764,5271345,5271718,5272117,5273600,5273995,5274350,5274836,5275095,5275521,5275794,5276431,5276675,5277165,5277400,5277653,5277991,5278386,5280054,5280307,5281939,5284423	
chr16	5284436	5296581	5284563	5296525	-	Cre16.g682552.t1.1	Cre16.g682552.t1.1		5296345,5295990,5291639,5289432,5287922,5286654,5286336,5286209,5285847,5285560,5285154,5284763,5284436	5296581,5296179,5295898,5290813,5289332,5287834,5286410,5286227,5286061,5285613,5285339,5285017,5284653	
chr16	7247008	7248609	7247673	7248419	-	Cre16.g682587.t1.1	Cre16.g682587.t1.1		7248374,7247008	7248609,7247943	
chr16	5229902	5237893	5230055	5237115	+	Cre16.g682600.t1.1	Cre16.g682600.t1.1		5229902,5230599,5230880,5231106,5231387,5231567,5231906,5232179,5232499,5232872,5233178,5233445,5233765,5234286,5234611,5235319,5236423,5236833	5230337,5230735,5230896,5231192,5231438,5231645,5231973,5232263,5232699,5232966,5233256,5233576,5234043,5234438,5234776,5235926,5236548,5237893	
chr16	5227423	5229823	5227695	5228896	+	Cre16.g682650.t1.1	Cre16.g682650.t1.1		5227423,5228019,5228768	5227795,5228345,5229823	
chr16	7248710	7253571	7249382	7252441	+	Cre16.g682699.t1.1	Cre16.g682699.t1.1		7248710,7249181,7250008,7251540,7251871,7252177,7252394	7248950,7249820,7251288,7251727,7251955,7252270,7253571	
chr16	5225205	5227293	5225839	5226596	-	Cre16.g682700.t1.2	Cre16.g682700.t1.2		5227102,5226569,5226129,5225205	5227293,5226859,5226262,5225924	
chr16	3594796	3597627	3594853	3596956	+	GST2	Cre16.g682725.t1.1		3594796,3594952,3595254,3595432,3595657,3596121,3596425,3596819	3594881,3595010,3595314,3595485,3595754,3596228,3596533,3597627	Expression is induced by various oxidative stress conditions [PMID: 17435007; PLANT SCIENCE 168:747-759], glutathione S-transferase (sigma class) (GST class-sigma) (Glutathione-dependent PGD synthetase) (Prostaglandin-H2 D-isomerase) (Hematopoietic prosta
chr16	5217222	5225203	5217465	5224532	+	Cre16.g682750.t1.2	Cre16.g682750.t1.2		5217222,5217625,5218347,5220463,5222092,5222418,5223054,5223272	5217513,5218216,5219153,5221758,5222192,5222901,5223121,5225203	
chr16	5213036	5217111	5213958	5216827	-	Cre16.g682800.t1.2	Cre16.g682800.t1.2		5216983,5216616,5216295,5215917,5215652,5215384,5215010,5214713,5213036	5217111,5216848,5216454,5216062,5215764,5215479,5215072,5214796,5214417	
chr16	7253574	7255119	7253694	7255023	-	Cre16.g682811.t1.1	Cre16.g682811.t1.1		7254993,7254561,7254359,7253574	7255119,7254704,7254474,7254139	
chr16	5209413	5213028	5209724	5212787	+	Cre16.g682850.t1.2	Cre16.g682850.t1.2		5209413,5210317,5210725	5210080,5210493,5213028	
chr16	5205786	5209278	5205813	5209145	-	CLPR2	Cre16.g682900.t1.2		5209116,5208950,5208807,5208609,5208196,5207382,5207004,5205887,5205786	5209278,5209002,5208876,5208726,5208330,5207501,5207168,5206686,5205813	
chr16	5205786	5209301	5205813	5208987	-	CLPR2	Cre16.g682900.t2.1		5209116,5208950,5208807,5208609,5208196,5207382,5207004,5205887,5205786	5209301,5209002,5208876,5208726,5208330,5207501,5207168,5206686,5205813	
chr16	7255220	7258261	7255307	7256028	+	Cre16.g682923.t1.1	Cre16.g682923.t1.1		7255220,7256024	7255591,7258261	
chr16	5201586	5205731	5201816	5205610	-	RAD9	Cre16.g682950.t1.1		5205691,5205522,5205303,5205029,5204646,5204278,5203525,5202959,5202764,5201586	5205731,5205621,5205414,5205153,5204755,5204388,5204023,5203384,5202848,5202600	Forms a sliding clamp complex with Hus1 and Rad1 that mediates repair at sites of DNA damage.  Homolog of yeast DDC1 [PMID: 17992532]
chr16	5198028	5201531	5198447	5201451	-	Cre16.g683000.t1.2	Cre16.g683000.t1.2		5201377,5199540,5199144,5198848,5198028	5201531,5201229,5199254,5198919,5198585	
chr16	7258274	7263279	7258569	7263134	-	Cre16.g683035.t1.1	Cre16.g683035.t1.1		7261755,7261237,7260529,7260206,7259838,7259516,7259256,7258274	7263279,7261576,7261103,7260330,7259983,7259638,7259371,7259029	
chr16	5189822	5197882	5189969	5197298	+	RNJ1	Cre16.g683050.t1.1		5189822,5190511,5191096,5191511,5191934,5192314,5192644,5193154,5193616,5193969,5194370,5194943,5195243,5195732,5196140,5196411,5196699	5190114,5190644,5191277,5191634,5192085,5192399,5192786,5193298,5193725,5194064,5194496,5195082,5195425,5195899,5196256,5196522,5197882	Ribonuclease J homolog; the B. subtilis protein carries both RNase E-like endoribonuclease and 5'-3' exoribonuclease activity. In Chlamydomonas, an alternate splice variant in the C-terminal region has been observed.
chr16	3597676	3599917	3597759	3599493	+	Cre16.g683081.t1.1	Cre16.g683081.t1.1		3597676,3597877,3598237,3598623,3598962,3599387	3597789,3597959,3598300,3598744,3599072,3599917	
chr16	5181687	5189681	5182935	5188939	-	Cre16.g683100.t1.2	Cre16.g683100.t1.2		5189486,5188468,5187873,5187434,5186692,5186195,5185466,5184736,5184324,5183720,5183342,5181687	5189681,5189215,5188034,5187642,5187196,5186395,5185715,5185131,5184448,5184103,5183582,5183072	
chr16	7263354	7272879	7264383	7272507	-	Cre16.g683147.t1.1	Cre16.g683147.t1.1		7272645,7272419,7272056,7271718,7271190,7269543,7269062,7268663,7268124,7267240,7266855,7266537,7266217,7265702,7264903,7263354	7272879,7272521,7272106,7271889,7271507,7271004,7269277,7268854,7268322,7267650,7266934,7266641,7266324,7265869,7265457,7264725	
chr16	5180406	5181607	5180497	5180972	+	Cre16.g683150.t1.2	Cre16.g683150.t1.2		5180406	5181607	
chr16	5177179	5180295	5177647	5179843	-	Cre16.g683200.t1.2	Cre16.g683200.t1.2		5179746,5179628,5179376,5179042,5178333,5177980,5177179	5180295,5179681,5179432,5179232,5178440,5178054,5177722	
chr16	5174926	5177177	5175083	5176314	+	Cre16.g683250.t1.2	Cre16.g683250.t1.2		5174926,5175269,5175584,5176029	5175176,5175370,5175679,5177177	
chr16	7273018	7276711	7273103	7276211	+	MCP29	Cre16.g683259.t1.1		7273018,7273521,7273739,7274712,7275028,7275279,7275528,7275770,7276031	7273311,7273573,7274413,7274841,7275091,7275348,7275605,7275820,7276711	
chr16	5172096	5174795	5172983	5174695	-	Cre16.g683300.t1.2	Cre16.g683300.t1.2		5174629,5174180,5173774,5173544,5172096	5174795,5174221,5173811,5173656,5173210	
chr16	5167016	5172077	5167455	5171496	+	TEH6	Cre16.g683350.t1.2		5167016,5167751,5168627,5168999,5169247,5169637,5169921,5170395,5170714,5171036,5171345	5167602,5168273,5168706,5169052,5169331,5169749,5170126,5170486,5170799,5171133,5172077	
chr16	7276714	7282439	7277514	7282157	-	ODC2	Cre16.g683371.t1.1		7282296,7282049,7281501,7281073,7280552,7280287,7279923,7279426,7279016,7278574,7278159,7277781,7276714	7282439,7282165,7281720,7281200,7280599,7280385,7280065,7279627,7279166,7278742,7278283,7277908,7277601	Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine, first step in polyamine biosynthesis(PMID: 11950995); fully active, based on conservation of important residues (PMID: 16847581), in particular a conserved lysine residue which is known, in mouse ODC, to be the site of attachment of the pyridoxal-phosphate group, a stretch of three consecutive glycine residues that has been proposed to be part of a substrate-binding region
chr16	5163132	5166915	5163940	5166426	-	Cre16.g683400.t1.2	Cre16.g683400.t1.2		5166417,5165923,5165377,5165041,5164544,5163132	5166915,5166162,5165592,5165136,5164813,5164393	
chr16	3599920	3605145	3601193	3604957	-	Cre16.g683437.t1.1	Cre16.g683437.t1.1		3604418,3604145,3603869,3603396,3603132,3602507,3601928,3599920	3605145,3604199,3604018,3603723,3603226,3602969,3602256,3601733	
chr16	5156620	5162949	5157454	5162562	-	AGP2	Cre16.g683450.t1.2		5162305,5162132,5161845,5161633,5161252,5160767,5160463,5159984,5159722,5159462,5159144,5158784,5158357,5157802,5156620	5162949,5162233,5161903,5161670,5161366,5160891,5160573,5160133,5159795,5159555,5159280,5158911,5158464,5157914,5157526	ADP-glucose pyrophosphorylase large subunit 2; Glucose-1-phosphate adenylyltransferase / ADP-glucose synthase; regulatory subunit catalyzes the formation of the glucosyl nucleotide from ATP and glucose-1-phosphate; contains nucleotidyl transferase domain; involved in starch metabolism
chr16	7282587	7285569	7283108	7285128	-	REX1	Cre16.g683483.t1.1		7285535,7285410,7285000,7284720,7284422,7283520,7283294,7282587	7285569,7285466,7285322,7284801,7284478,7284095,7283333,7283143	Phenotype of insertional mutant implicates this gene in UV-light tolerance and DNA repair; based on RT-PCR, has been described as a bicistronic gene (AY236481), with two proteins encoded on the same transcript: Rex1-S is the small non-essential TFB5 subunit of general Transcription Factor II H, involved in Nucleotide Excision Repair, while Rex1-B is of unknown function; only Rex1-S appears strictly necessary for resistance, but Rex1-B contributes; this gene model describes only Rex1-B; there is no 454 EST support for the 5' exon, evidenced only in 1031103D12 clone.
chr16	5152146	5156617	5152189	5156380	+	HEL64	Cre16.g683500.t1.2		5152146,5153055,5153472,5153791,5154247,5154540,5154802,5155183,5155592,5156206	5152737,5153115,5153567,5153900,5154361,5154602,5154955,5155345,5155748,5156617	
chr16	5142560	5152025	5143039	5151823	-	Cre16.g683550.t1.2	Cre16.g683550.t1.2		5151744,5151573,5150727,5149572,5148076,5146804,5146511,5145948,5145446,5144974,5144547,5144294,5143866,5143333,5142560	5152025,5151655,5151371,5150498,5148981,5147903,5146601,5146183,5145738,5145316,5144712,5144368,5144024,5143503,5143084	
chr16	7285670	7291541	7285788	7291307	+	CAX4	Cre16.g683595.t1.1		7285670,7286124,7286662,7287095,7287482,7287938,7288324,7288576,7289198,7290192,7290750	7285887,7286348,7286788,7287248,7287575,7288080,7288404,7289009,7289896,7290476,7291541	Related to Ca2+/Na+ exchanger; cation exchanger family (CAX) [PMID: 15710683]
chr16	5141060	5142505	5141696	5142385	-	Cre16.g683600.t1.2	Cre16.g683600.t1.2		5142090,5141823,5141060	5142505,5141988,5141696	
chr16	5141060	5142505	5141701	5142385	-	Cre16.g683600.t2.1	Cre16.g683600.t2.1		5142090,5141823,5141060	5142505,5141988,5141701	
chr16	5136056	5141057	5136073	5140368	+	Cre16.g683650.t1.2	Cre16.g683650.t1.2		5136056,5136250,5137182,5137608,5137997,5138313,5138607,5138983,5139307,5139706,5140098	5136126,5136886,5137313,5137709,5138113,5138402,5138719,5139091,5139375,5139810,5141057	
chr16	5133766	5136009	5133900	5135684	+	Cre16.g683700.t1.2	Cre16.g683700.t1.2		5133766,5134005,5134348,5134668,5134951,5135151,5135515	5133910,5134117,5134467,5134737,5134999,5135285,5136009	
chr16	7291613	7295656	7293105	7295455	-	Cre16.g683707.t1.1	Cre16.g683707.t1.1		7295365,7295084,7294795,7294382,7291613	7295656,7295271,7294931,7294551,7294188	
chr16	5131766	5133717	5131830	5133197	+	CGL67	Cre16.g683750.t1.2		5131766,5132112,5132724,5132994	5131986,5132360,5132856,5133717	Conserved in the Green Lineage
chr16	3605276	3610897	3605433	3610032	+	Cre16.g683793.t1.1	Cre16.g683793.t1.1		3605276,3605810,3606082,3606426,3606827,3607472,3608223,3609231	3605537,3605938,3606201,3606636,3606982,3608000,3608689,3610897	
chr16	5129350	5131655	5129383	5131576	-	Cre16.g683800.t1.1	Cre16.g683800.t1.1		5131423,5129350	5131655,5131315	
chr16	7295791	7298659	7296208	7298618	-	Cre16.g683819.t1.1	Cre16.g683819.t1.1		7298402,7298162,7297276,7296966,7296514,7295791	7298659,7298192,7298003,7297091,7296614,7296284	
chr16	5125336	5129340	5125706	5129006	+	GDP1	Cre16.g683850.t1.1		5125336,5125849,5126137,5126366,5126655,5126897,5127333,5127618,5127848,5128082,5128397,5128844	5125772,5125910,5126186,5126466,5126703,5127030,5127443,5127689,5127927,5128217,5128540,5129340	
chr16	5119286	5123809	5119521	5123145	+	GDP2	Cre16.g683900.t1.1		5119286,5119756,5120093,5120276,5120647,5120909,5121339,5121616,5121913,5122167,5122480,5122750,5123061	5119575,5119817,5120142,5120376,5120695,5121042,5121449,5121687,5121992,5122302,5122545,5122905,5123809	
chr16	7299662	7305599	7302052	7305380	-	Cre16.g683931.t1.1	Cre16.g683931.t1.1		7305320,7305005,7304438,7302507,7299662	7305599,7305144,7304807,7304312,7302358	
chr16	5098038	5102394	5098170	5101995	+	SRP1	Cre16.g683950.t1.2		5098038,5098764,5099121,5099491,5099934,5100601,5100996,5101258,5101503	5098605,5098925,5099279,5099682,5100182,5100753,5101134,5101340,5102394	Expressed Protein. Similar to the Alpha subunit of the Signal Recognition Particle (SRP) Receptor. Involved in Protein Translocation across the ER membrane. Contains GTPase and AAA-ATPase domains.
chr16	5102716	5118027	5103495	5115285	+	Cre16.g683953.t1.1	Cre16.g683953.t1.1		5102716,5104372,5104661,5107976	5103630,5104441,5104760,5118027	
chr16	5118076	5118620	5118107	5118273	+	Cre16.g683954.t1.1	Cre16.g683954.t1.1		5118076	5118620	
chr16	5093870	5097935	5094140	5097771	-	Cre16.g684000.t1.1	Cre16.g684000.t1.1		5097560,5097189,5096953,5096738,5096344,5096085,5093870	5097935,5097359,5097037,5096825,5096430,5096218,5095785	
chr16	5088660	5093815	5089155	5093682	-	Cre16.g684022.t1.2	Cre16.g684022.t1.2		5091744,5091024,5090623,5089948,5088660	5093815,5091290,5090885,5090428,5089614	
chr16	7305760	7309971	7306300	7309430	+	Cre16.g684043.t1.1	Cre16.g684043.t1.1		7305760,7306229,7306696,7306949,7307259,7307519,7307690,7308094,7308549,7308815,7309162,7309373	7306014,7306567,7306840,7307054,7307400,7307581,7307985,7308325,7308707,7308960,7309234,7309971	
chr16	5085889	5088605	5086032	5088502	-	Cre16.g684050.t1.1	Cre16.g684050.t1.1		5087980,5087241,5086924,5086629,5085889	5088605,5087728,5087073,5086764,5086500	
chr16	5084570	5085825	5084834	5085702	-	Cre16.g684065.t1.2	Cre16.g684065.t1.2		5085696,5085408,5085151,5084570	5085825,5085520,5085232,5084921	
chr16	5071876	5084567	5071955	5084161	+	Cre16.g684100.t1.2	Cre16.g684100.t1.2		5071876,5072538,5072886,5073106,5073431,5073752,5074104,5074369,5074641,5074976,5075743,5076569,5076824,5077380,5077712,5078120,5078432,5078937,5079221,5079697,5080103,5080432,5080833,5081272,5083524,5083795	5072204,5072669,5072941,5073298,5073580,5073943,5074208,5074465,5074799,5075567,5076437,5076688,5077242,5077553,5077981,5078287,5078779,5079090,5079562,5079902,5080226,5080698,5081071,5083300,5083624,5084567	
chr16	3610900	3614425	3611414	3614162	-	Cre16.g684149.t1.1	Cre16.g684149.t1.1		3611891,3610900	3614425,3611747	
chr16	5069601	5071755	5070318	5071525	-	Cre16.g684150.t1.2	Cre16.g684150.t1.2		5071217,5070992,5069601	5071755,5071108,5070715	
chr16	7310443	7314389	7310830	7313933	-	Cre16.g684155.t1.1	Cre16.g684155.t1.1		7314102,7313870,7313704,7313506,7313310,7312916,7312606,7311927,7311517,7311134,7310443	7314389,7313996,7313728,7313552,7313372,7313146,7312724,7312188,7311712,7311273,7310923	
chr16	5068190	5069425	5068295	5069397	-	Cre16.g684200.t1.2	Cre16.g684200.t1.2		5068694,5068190	5069425,5068510	
chr16	5068190	5069255	5068295	5069202	-	Cre16.g684200.t2.1	Cre16.g684200.t2.1		5068694,5068190	5069255,5068510	
chr16	5062406	5068177	5062534	5067478	+	Cre16.g684250.t1.1	Cre16.g684250.t1.1		5062406,5062681,5065758,5066234,5066649,5066926,5067304	5062544,5065549,5065956,5066443,5066724,5067095,5068177	
chr16	7314484	7316589	7314600	7315557	+	Cre16.g684267.t1.1	Cre16.g684267.t1.1		7314484,7314948	7314717,7316589	
chr16	5060225	5062295	5060997	5062147	-	YGG3	Cre16.g684300.t1.2		5062134,5061905,5061663,5061365,5060225	5062295,5062050,5061800,5061454,5061138	
chr16	5057160	5060055	5057922	5059737	-	Cre16.g684350.t1.2	Cre16.g684350.t1.2		5059733,5059220,5058991,5058587,5058255,5057160	5060055,5059455,5059003,5058867,5058416,5058114	COG284, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
chr16	7316594	7322579	7317234	7322458	-	Cre16.g684379.t1.1	Cre16.g684379.t1.1		7322361,7316594	7322579,7322213	
chr16	5049513	5057035	5050999	5056874	-	Cre16.g684400.t1.1	Cre16.g684400.t1.1		5056865,5056190,5055858,5055504,5055266,5054919,5054684,5049513	5057035,5056243,5055926,5055650,5055364,5055107,5054748,5054501	
chr16	5049513	5057035	5050999	5056340	-	Cre16.g684400.t2.1	Cre16.g684400.t2.1		5056337,5056190,5055858,5055504,5055266,5054919,5054684,5049513	5057035,5056243,5055926,5055650,5055364,5055107,5054748,5054501	
chr16	5039438	5046165	5041497	5045470	-	Cre16.g684450.t1.2	Cre16.g684450.t1.2		5044027,5043781,5043586,5043211,5042899,5042671,5041739,5039438	5046165,5043861,5043657,5043379,5043009,5042732,5042479,5041575	
chr16	7322634	7326489	7322960	7326235	-	Cre16.g684491.t1.1	Cre16.g684491.t1.1		7325929,7325323,7324833,7323591,7322634	7326489,7325579,7325145,7324659,7323184	
chr16	5037596	5039397	5037864	5039163	+	CSB62	Cre16.g684500.t1.2		5037596,5038304,5038814,5039040	5037916,5038695,5038924,5039397	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr16	3614686	3617876	3615396	3617511	+	Cre16.g684505.t1.1	Cre16.g684505.t1.1		3614686,3615264,3615723,3617148	3615138,3615656,3616920,3617876	
chr16	5035605	5037547	5036281	5037117	+	Cre16.g684550.t1.1	Cre16.g684550.t1.1		5035605,5035975,5036169,5036620,5036922	5035864,5036064,5036449,5036781,5037547	COG284, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
chr16	5026440	5035455	5026862	5035283	-	SEC5	Cre16.g684600.t1.2		5034575,5034229,5033880,5033596,5033254,5032946,5032516,5032252,5031782,5031552,5030525,5030271,5029946,5029691,5029406,5028739,5028209,5027667,5026440	5035455,5034291,5034005,5033652,5033373,5033098,5032674,5032344,5032075,5031635,5031414,5030334,5030109,5029748,5029516,5029207,5028592,5027899,5027459	Contains regions similar to SEC5, a component of the exocyst complex involved in secretion/exocytosis
chr16	7328468	7333732	7328582	7332948	+	Cre16.g684603.t1.1	Cre16.g684603.t1.1		7328468,7329015,7329318,7330550,7330795,7332276,7332584	7328915,7329089,7330346,7330655,7332130,7332431,7333732	
chr16	5022126	5026436	5022221	5025617	+	Cre16.g684650.t1.2	Cre16.g684650.t1.2		5022126,5022412,5022677,5022807,5023142,5023260,5023844,5024571,5024941,5025281	5022305,5022480,5022713,5023050,5023172,5023514,5024296,5024747,5025075,5026436	
chr16	5018090	5022015	5018188	5021889	-	Cre16.g684700.t1.1	Cre16.g684700.t1.1		5021755,5021400,5020657,5020220,5019675,5019091,5018793,5018090	5022015,5021535,5020825,5020375,5019922,5019348,5018915,5018563	
chr16	7335060	7353906	7335370	7353639	+	DCL2	Cre16.g684715.t1.1		7335060,7335609,7335924,7336612,7337193,7337542,7337888,7338378,7338712,7339029,7339404,7339662,7339970,7340212,7340694,7341413,7341761,7342031,7342217,7344247,7344534,7344920,7345259,7346730,7349659,7350120,7351156,7351699,7352093,7352505,7353441	7335479,7335721,7336367,7336926,7337270,7337646,7338041,7338469,7338903,7339090,7339463,7339780,7340088,7340562,7341095,7341501,7341843,7342094,7344147,7344319,7344759,7345040,7346563,7349406,7349722,7350971,7351455,7351811,7352252,7353242,7353906	Presumably involved in posttranscriptional gene silencing/RNA interference
chr16	5014036	5018087	5014295	5017503	+	Cre16.g684750.t1.2	Cre16.g684750.t1.2		5014036,5014624,5014917,5015175,5015454,5015652,5015838,5016053,5016395,5016609,5016810,5017110,5017377	5014409,5014661,5015008,5015254,5015522,5015712,5015859,5016185,5016479,5016663,5016897,5017232,5018087	
chr16	5010116	5013983	5010168	5013559	+	Cre16.g684800.t1.1	Cre16.g684800.t1.1		5010116,5010547,5011338,5011945,5012276,5012569,5012919,5013160,5013415	5010324,5010853,5011654,5012016,5012393,5012680,5012982,5013225,5013983	
chr16	7354130	7360251	7354532	7358694	+	Cre16.g684827.t1.1	Cre16.g684827.t1.1		7354130,7355025,7355337,7355610,7356386,7356609,7358022,7358330	7354682,7355099,7355429,7356257,7356491,7357881,7358177,7360251	
chr16	5007300	5009907	5007462	5009506	-	Cre16.g684850.t1.2	Cre16.g684850.t1.2		5009492,5009163,5008141,5007300	5009907,5009379,5008366,5007953	
chr16	3617905	3623195	3620330	3622900	-	Cre16.g684861.t1.1	Cre16.g684861.t1.1		3622885,3622158,3621766,3617905	3623195,3622304,3621843,3621551	
chr16	5002506	5007295	5002535	5006869	+	Cre16.g684900.t1.1	Cre16.g684900.t1.1		5002506,5002822,5003349,5003573,5003892,5004299,5004638,5005229,5005706,5006086,5006411	5002617,5003120,5003386,5003643,5004132,5004513,5004922,5005362,5005843,5006146,5007295	
chr16	7360340	7365871	7360369	7364608	+	Cre16.g684939.t1.1	Cre16.g684939.t1.1		7360340,7360844,7361156,7361434,7362210,7362452,7363887,7364226	7360519,7360918,7361248,7362081,7362315,7363658,7364042,7365871	
chr16	5000175	5002379	5001464	5002123	-	Cre16.g684950.t1.2	Cre16.g684950.t1.2		5002087,5000175	5002379,5001827	
chr16	4996361	4999199	4997698	4998962	-	Cre16.g685000.t1.2	Cre16.g685000.t1.2		4998713,4998363,4998005,4996361	4999199,4998581,4998139,4997824	
chr16	4990180	4993799	4991568	4993571	-	LCI15	Cre16.g685050.t1.1		4993505,4992878,4992309,4991915,4990180	4993799,4993288,4992500,4992049,4991715	Related to PRLI-interacting factor L. Putative mitochondrial matrix protein. Three paralogous genes are located in tandem repeats. Also homologous to PRLI-interacting factor L in Arabidopsis [PMID: 9765207]; regulated by CCM1 [PMID: 15235119]; Acclimation
chr16	4994914	4995839	4995497	4995726	-	Cre16.g685052.t1.1	Cre16.g685052.t1.1		4994914	4995839	
chr16	7365874	7375049	7367058	7374719	-	Cre16.g685053.t1.1	Cre16.g685053.t1.1		7374893,7369085,7365874	7375049,7374761,7368948	
chr16	4986952	4989719	4987967	4989426	-	Cre16.g685100.t1.1	Cre16.g685100.t1.1		4989372,4988870,4988479,4988167,4986952	4989719,4989145,4988727,4988301,4988033	
chr16	4984630	4986950	4984766	4986266	+	Cre16.g685150.t1.2	Cre16.g685150.t1.2		4984630,4984989,4985673,4986168	4984806,4985066,4985753,4986950	
chr16	7375417	7379454	7375724	7379110	-	Cre16.g685165.t1.1	Cre16.g685165.t1.1		7379240,7378971,7378350,7377871,7377410,7376052,7375417	7379454,7379137,7378847,7378145,7377563,7377135,7375812	
chr16	7375417	7379449	7375724	7379110	-	Cre16.g685165.t2.1	Cre16.g685165.t2.1		7379240,7378971,7378350,7377871,7377410,7376052,7375417	7379449,7379133,7378847,7378145,7377563,7377135,7375812	
chr16	4977458	4984529	4977819	4984508	-	Cre16.g685200.t1.1	Cre16.g685200.t1.1		4984359,4984054,4983700,4982497,4982110,4981812,4981341,4980973,4980591,4980254,4979499,4979194,4978875,4978637,4978321,4977458	4984529,4984168,4983898,4983538,4982206,4981926,4981555,4981036,4980712,4980372,4979921,4979254,4978976,4978689,4978454,4977977	
chr16	3623332	3627685	3623710	3627451	-	Cre16.g685217.t1.1	Cre16.g685217.t1.1		3627122,3626438,3626008,3625367,3624653,3624131,3623332	3627685,3626519,3626103,3625608,3624924,3624358,3623877	
chr16	4967700	4977341	4967884	4976458	+	SUB11	Cre16.g685250.t1.2		4967700,4968112,4968761,4969136,4969472,4970082,4970395,4970676,4971026,4971436,4971691,4972146,4972399,4972712,4972917,4973130,4973411,4973816,4974416,4974800,4975042	4968025,4968234,4968889,4969199,4969708,4970131,4970470,4970875,4971251,4971551,4971927,4972275,4972541,4972813,4973010,4973320,4973653,4974205,4974642,4974863,4977341	
chr16	7379590	7383869	7380114	7383673	-	AP2M2	Cre16.g685277.t1.1		7383587,7383161,7382794,7382527,7382273,7381869,7381524,7381177,7380878,7380524,7380311,7379590	7383869,7383353,7382860,7382576,7382365,7382019,7381621,7381271,7380998,7380751,7380388,7380171	Expressed protein. Mu2-Adaptin, clathrin adaptor complex medium subunit, putative member of AP-2 complex
chr16	4964300	4967621	4964554	4967253	+	Cre16.g685300.t1.2	Cre16.g685300.t1.2		4964300,4964744,4965012,4965274,4965483,4965740,4966102,4966752,4967079	4964588,4964855,4965133,4965369,4965554,4965937,4966553,4966856,4967621	
chr16	4962574	4964192	4963235	4964062	-	Cre16.g685350.t1.2	Cre16.g685350.t1.2		4964034,4963670,4962574	4964192,4963952,4963338	
chr16	7384425	7390204	7385209	7389926	-	Cre16.g685389.t1.1	Cre16.g685389.t1.1		7389829,7389480,7389243,7388877,7388446,7388118,7387835,7387567,7387188,7386852,7384425	7390204,7389544,7389290,7388960,7388541,7388213,7387898,7387581,7387341,7387014,7386694	
chr16	4959300	4962572	4959424	4961721	+	Cre16.g685400.t1.2	Cre16.g685400.t1.2		4959300,4959631,4960068,4960497,4960890,4961227,4961520	4959512,4959887,4960236,4960632,4961021,4961311,4962572	Similar to Tic32 from Pisum sativum (AAS38575); belongs to the classical family of short chain dehydrogenases [PMID: 15180984]; lacks a calmodulin-binding domain [PMID: 17035502]
chr16	4937130	4958987	4937360	4958139	+	DHC8	Cre16.g685450.t1.1		4937130,4937875,4938141,4938589,4938941,4939339,4939875,4940552,4941036,4941614,4942074,4942537,4942874,4943344,4943754,4944055,4944570,4945589,4946133,4946541,4947041,4947415,4947922,4948284,4948918,4949367,4949787,4950818,4951470,4951850,4952176,4952901,4953835,4954500,4955234,4955527,4956841	4937600,4937992,4938339,4938709,4939057,4939521,4940187,4940799,4941320,4941775,4942395,4942649,4943116,4943562,4943860,4944325,4945361,4945876,4946384,4946877,4947228,4947756,4948109,4948758,4949132,4949610,4950605,4951246,4951657,4951996,4952659,4953580,4954257,4955004,4955310,4956524,4958987	Flagellar inner arm dynein heavy chain, dynein e.  Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]
chr16	13428	18955	16038	18860	-	Cre16.g685451.t1.1	Cre16.g685451.t1.1		18799,18150,16860,13428	18955,18205,17124,16049	
chr16	4932664	4937029	4933919	4936778	-	Cre16.g685500.t1.2	Cre16.g685500.t1.2		4936757,4936534,4936326,4936038,4935704,4935380,4934995,4934777,4934484,4932664	4937029,4936660,4936374,4936110,4935778,4935445,4935179,4934827,4934614,4934290	
chr16	4932664	4937029	4933919	4936778	-	Cre16.g685500.t2.1	Cre16.g685500.t2.1		4936757,4936534,4936326,4936038,4935704,4935380,4934995,4934484,4932664	4937029,4936660,4936374,4936110,4935778,4935445,4935179,4934614,4934290	
chr16	7390289	7394085	7392356	7393553	-	Cre16.g685501.t1.1	Cre16.g685501.t1.1		7393974,7393430,7393089,7392708,7390289	7394085,7393558,7393206,7392812,7392412	
chr16	7390289	7394384	7392356	7393553	-	Cre16.g685501.t2.1	Cre16.g685501.t2.1		7393688,7393430,7393089,7392708,7390289	7394384,7393558,7393206,7392812,7392412	
chr16	4927164	4932229	4927498	4931753	-	OASTL4	Cre16.g685550.t1.2		4931702,4931378,4931060,4930780,4930249,4929974,4929372,4928934,4928399,4927826,4927164	4932229,4931471,4931162,4930837,4930351,4930047,4929528,4929133,4928500,4927951,4927510	(O-acetylserine sulfhydrylase (O-acetylserine (Thiol)-lyase), (CYSL); described as Cys1Acr, AAC27794 (PMID 10491132); this is OASTL4a, the more frequent of the two mRNAs produced from this gene; the encoded proteins are both predicted to be organelle-targeted, and by homology, they probably reside in the chloroplast
chr16	3629638	3633544	3630765	3633379	-	FAP214	Cre16.g685573.t1.1		3632749,3631925,3631513,3631118,3629638	3633544,3632131,3631557,3631276,3630936	contains  Ca2+Dependent Phospholipid-Binding Domain C2
chr16	4919860	4927052	4920567	4926650	+	Cre16.g685600.t1.2	Cre16.g685600.t1.2		4919860,4921835,4923071,4924172,4924870,4925453,4926569	4921374,4922590,4923178,4924316,4925018,4926355,4927052	
chr16	7394769	7404094	7395017	7403924	-	Cre16.g685613.t1.1	Cre16.g685613.t1.1		7403837,7401666,7401420,7401118,7400736,7400534,7400304,7399926,7399622,7399213,7398826,7397995,7397169,7396761,7396482,7396263,7395898,7395600,7394769	7404094,7403771,7401483,7401234,7400839,7400569,7400407,7400061,7399737,7399309,7398984,7398405,7397795,7396904,7396550,7396295,7395972,7395680,7395398	
chr16	4917064	4919659	4918475	4918905	-	Cre16.g685628.t1.2	Cre16.g685628.t1.2		4917064	4919659	
chr16	4905841	4915199	4907415	4914720	-	GLR1	Cre16.g685650.t1.1		4914563,4914390,4913158,4912818,4912308,4911846,4911588,4911416,4911032,4910693,4910415,4910012,4909622,4909114,4908798,4908414,4905841	4915199,4914463,4913297,4912881,4912412,4911969,4911632,4911450,4911070,4910742,4910469,4910061,4909739,4909191,4908929,4908563,4908105	
chr16	4903073	4905800	4903171	4905303	+	Cre16.g685700.t1.2	Cre16.g685700.t1.2		4903073,4903594,4903872,4904279,4904783,4905150	4903231,4903675,4903987,4904479,4904821,4905800	
chr16	7404149	7412424	7404853	7411646	-	Cre16.g685725.t1.1	Cre16.g685725.t1.1		7411794,7411325,7410422,7410074,7409411,7408943,7407368,7406951,7406608,7406225,7404149	7412424,7411681,7410883,7410247,7409780,7409145,7408756,7407170,7406789,7406353,7406071	
chr16	7404149	7412424	7404853	7411646	-	Cre16.g685725.t2.1	Cre16.g685725.t2.1		7411794,7411325,7410422,7410074,7409411,7408943,7407368,7406951,7406608,7406225,7404149	7412424,7411681,7410883,7410247,7409780,7409145,7408753,7407170,7406789,7406353,7406071	
chr16	4897386	4901247	4897522	4900452	+	Cre16.g685750.t1.1	Cre16.g685750.t1.1		4897386,4897941,4898715,4899146,4899603,4900061	4897606,4898273,4898861,4899349,4899766,4901247	
chr16	4892370	4897065	4892540	4896715	-	Cre16.g685800.t1.2	Cre16.g685800.t1.2		4896637,4896028,4895193,4893905,4892370	4897065,4896456,4895513,4894846,4893362	
chr16	7414679	7416444	7416172	7416416	-	Cre16.g685837.t1.1	Cre16.g685837.t1.1		7414679	7416444	
chr16	4873683	4878725	4874250	4878694	-	PRMT3	Cre16.g685900.t1.2		4878457,4877603,4877000,4876563,4876101,4875787,4875046,4874669,4873683	4878725,4877880,4877408,4876735,4876203,4875925,4875490,4874788,4874323	ChromDB PRMT3403
chr16	4878826	4892357	4879044	4891436	+	Cre16.g685901.t1.1	Cre16.g685901.t1.1		4878826,4879215,4879387,4879775,4880308,4881087,4881535,4882151,4882542,4882939,4883477,4883866,4884391,4884889,4885442,4886006,4886507,4886993,4887628,4888117,4888597,4888972,4889583,4890130,4890548,4890874,4891316	4879104,4879289,4879464,4879831,4880417,4881162,4881653,4882277,4882673,4883049,4883548,4884005,4884473,4884980,4885531,4886070,4886565,4887114,4887762,4888254,4888641,4889127,4889804,4890246,4890659,4890992,4892357	
chr16	3633646	3637867	3633778	3637142	+	Cre16.g685929.t1.1	Cre16.g685929.t1.1		3633646,3634146,3634861,3635345,3635630,3635944,3636836	3633941,3634273,3635031,3635467,3635728,3636513,3637867	
chr16	7416499	7418614	7416520	7417744	-	Cre16.g685949.t1.1	Cre16.g685949.t1.1		7418181,7417626,7417317,7416780,7416499	7418614,7417759,7417391,7416983,7416520	
chr16	7416499	7418614	7416520	7417744	-	Cre16.g685949.t2.1	Cre16.g685949.t2.1		7418181,7417626,7417317,7416780,7416499	7418614,7417819,7417391,7416983,7416520	
chr16	7416909	7418614	7416983	7417744	-	Cre16.g685949.t3.1	Cre16.g685949.t3.1		7418181,7417626,7417317,7416909	7418614,7417819,7417391,7416983	
chr16	4869836	4873617	4870092	4873048	+	Cre16.g685950.t1.1	Cre16.g685950.t1.1		4869836,4870627,4871714,4872059	4870389,4871555,4871934,4873617	
chr16	4863364	4868265	4863882	4868171	-	Cre16.g686000.t1.1	Cre16.g686000.t1.1		4868002,4867790,4867241,4866496,4866014,4865177,4864779,4864376,4863364	4868265,4867919,4867320,4866938,4866217,4865245,4864847,4864498,4863987	Putative pre-mRNA splicing factor with Suppressor-of-White-APricot (SWAP) domain (Surp module)
chr16	4868516	4869787	4868616	4869715	+	Cre16.g686002.t1.1	Cre16.g686002.t1.1		4868516,4869046	4868838,4869787	
chr16	4851980	4863315	4852882	4863287	-	Cre16.g686050.t1.1	Cre16.g686050.t1.1		4863218,4863041,4862604,4862171,4861563,4859983,4859655,4859233,4858835,4858299,4856242,4855887,4855506,4855096,4854313,4853684,4853372,4851980	4863315,4863099,4862690,4862250,4861641,4861242,4859739,4859313,4858922,4858484,4857979,4855985,4855594,4855159,4854409,4853818,4853506,4852984	
chr16	7416849	7418614	7416983	7418211	-	Cre16.g686061.t1.1	Cre16.g686061.t1.1		7418181,7417626,7417317,7416849	7418614,7417759,7417391,7416983	
chr16	4841746	4851433	4841979	4849093	+	Cre16.g686100.t1.1	Cre16.g686100.t1.1		4841746,4842339,4842732,4843240,4845586	4842081,4842422,4842817,4845181,4851433	
chr16	7420755	7424956	7421123	7424727	+	Cre16.g686173.t1.1	Cre16.g686173.t1.1		7420755,7421040,7421497,7421909,7422481,7422783,7423533,7423933,7424336	7420931,7421153,7421587,7421972,7422564,7422924,7423609,7424097,7424956	
chr16	4818546	4834417	4818708	4833728	+	Cre16.g686200.t1.1	Cre16.g686200.t1.1		4818546,4819024,4820386,4821062,4821510,4821959,4822234,4822828,4823387,4823929,4824656,4825158,4825578,4826029,4826713,4827067,4827479,4828058,4828476,4828859,4829250,4830011,4830956,4831573,4831939,4832204,4832911	4818793,4819214,4820550,4821193,4821629,4822033,4822345,4822967,4823488,4823993,4824818,4825235,4825709,4826124,4826813,4827151,4827739,4828243,4828559,4828967,4829650,4830623,4831071,4831640,4831996,4832529,4834417	
chr16	4834526	4837047	4835061	4836501	+	Cre16.g686202.t1.1	Cre16.g686202.t1.1		4834526,4836075,4836340	4835128,4836137,4837047	
chr16	4837116	4840257	4837232	4839638	+	Cre16.g686203.t1.1	Cre16.g686203.t1.1		4837116,4837675,4838089,4838502,4839134,4839386	4837352,4837818,4838233,4838780,4839315,4840257	
chr16	4812146	4818336	4812435	4815717	+	Cre16.g686250.t1.1	Cre16.g686250.t1.1		4812146,4812723,4813030	4812536,4812778,4818336	
chr16	3637878	3642755	3639501	3642204	-	Cre16.g686285.t1.1	Cre16.g686285.t1.1		3641998,3641729,3641422,3637878	3642755,3641842,3641479,3641220	
chr16	7425005	7434666	7425030	7433738	+	Cre16.g686286.t1.1	Cre16.g686286.t1.1		7425005,7425334,7426885,7427143,7427477,7428745,7430037,7430389,7430848,7431786,7432266,7432734,7433672	7425156,7426423,7426961,7427223,7428520,7429722,7430075,7430506,7430957,7431911,7432325,7432835,7434666	
chr16	4803316	4806717	4803809	4806149	+	Cre16.g686300.t1.2	Cre16.g686300.t1.2		4803316,4804129,4805583,4805945	4803922,4805137,4805726,4806717	
chr16	4799406	4803177	4799488	4802299	+	Cre16.g686350.t1.1	Cre16.g686350.t1.1		4799406,4800227,4800969,4801476,4801768	4799926,4800346,4801250,4801541,4803177	
chr16	7434835	7441657	7434930	7440923	+	Cre16.g686398.t1.1	Cre16.g686398.t1.1		7434835,7436532,7437532,7437884,7438342,7439030,7439512,7439925,7440857	7435005,7437182,7437570,7438001,7438451,7439155,7439571,7440026,7441657	
chr16	4793110	4799245	4793705	4798994	-	Cre16.g686400.t1.2	Cre16.g686400.t1.2		4798924,4798565,4798002,4797548,4797126,4796775,4796434,4795866,4795413,4794924,4794596,4794217,4793110	4799245,4798675,4798149,4797656,4797212,4796866,4796520,4796003,4795611,4794995,4794679,4794282,4793966	
chr16	4778000	4781915	4779153	4781698	-	Cre16.g686500.t1.1	Cre16.g686500.t1.1		4781338,4780405,4779458,4778000	4781915,4780869,4779940,4779171	
chr16	4782576	4793087	4782833	4792290	+	Cre16.g686501.t1.1	Cre16.g686501.t1.1		4782576,4783291,4783542,4784374,4784764,4785290,4785895,4786383,4787408,4787889,4788405,4788718,4790014,4790767,4791442,4791925	4782980,4783408,4784087,4784546,4785017,4785535,4786225,4787042,4787551,4788188,4788603,4789934,4790325,4790929,4791594,4793087	
chr16	7441975	7444606	7442297	7443906	+	Cre16.g686510.t1.1	Cre16.g686510.t1.1		7441975,7442276,7442501,7442815,7443462	7442175,7442411,7442551,7443036,7444606	
chr16	7441975	7444606	7442297	7443906	+	Cre16.g686510.t2.1	Cre16.g686510.t2.1		7441975,7442276,7442504,7442815,7443462	7442175,7442411,7442551,7443036,7444606	
chr16	7441975	7444606	7442091	7443906	+	Cre16.g686510.t3.1	Cre16.g686510.t3.1		7441975,7442501,7442815,7443462	7442175,7442551,7443036,7444606	
chr16	4771166	4775942	4771263	4774646	+	Cre16.g686550.t1.1	Cre16.g686550.t1.1		4771166,4771767,4772331,4772679,4773005,4774385	4771480,4771941,4772433,4772794,4773218,4775942	
chr16	4775950	4777735	4776220	4777506	-	Cre16.g686552.t1.1	Cre16.g686552.t1.1		4777335,4776878,4775950	4777735,4777045,4776499	
chr16	4761890	4771005	4763475	4770694	-	Cre16.g686600.t1.2	Cre16.g686600.t1.2		4770664,4769486,4767762,4767344,4766843,4764638,4764276,4761890	4771005,4770412,4769275,4767444,4766923,4766169,4764415,4764004	
chr16	7446025	7453866	7446393	7451938	+	Cre16.g686622.t1.1	Cre16.g686622.t1.1		7446025,7446291,7447483,7448073,7448294,7449600,7449812,7451896	7446121,7447347,7447963,7448149,7449446,7449691,7451680,7453866	
chr16	3644966	3646767	3645186	3646123	+	Cre16.g686641.t1.1	Cre16.g686641.t1.1		3644966,3645339,3645971	3645189,3645882,3646767	
chr16	4754128	4761555	4754474	4761469	-	Cre16.g686650.t1.2	Cre16.g686650.t1.2		4760955,4760463,4759851,4759334,4758878,4758437,4757454,4757009,4756403,4756006,4755566,4754899,4754128	4761555,4760581,4759968,4759463,4758962,4758694,4758005,4757180,4756530,4756162,4755682,4755074,4754609	
chr16	4750697	4754079	4751294	4753408	-	Cre16.g686700.t1.1	Cre16.g686700.t1.1		4753682,4752990,4752548,4752063,4751795,4750697	4754079,4753440,4752665,4752185,4751888,4751405	
chr16	7453925	7460933	7453954	7458366	+	Cre16.g686734.t1.1	Cre16.g686734.t1.1		7453925,7454365,7456168,7456549,7456884,7457259,7457625,7457856	7454159,7455569,7456320,7456604,7457036,7457332,7457635,7460933	
chr16	4744739	4750135	4746184	4749777	-	PTA3	Cre16.g686750.t1.2		4749640,4749525,4749192,4748885,4748689,4748291,4747898,4747657,4747329,4746798,4746532,4744739	4750135,4749570,4749344,4748957,4748744,4748471,4748080,4747769,4747514,4747122,4746668,4746316	Putative phosphate transporter homolog type A-4, similar to yeast Pho84 H+/Pi symporter; clusters with PTA2 and PTA4 on scaffold 14. gi 21218043 dbj AB074876.1
chr16	4742010	4744025	4742340	4743703	-	Cre16.g686789.t1.2	Cre16.g686789.t1.2		4743670,4743241,4742875,4742010	4744025,4743421,4743127,4742340	
chr16	4736929	4741945	4738485	4741854	-	PTA2	Cre16.g686800.t1.2		4741735,4741621,4741287,4741096,4740915,4740596,4740260,4740014,4739686,4739143,4738865,4736929	4741945,4741666,4741439,4741168,4740970,4740776,4740442,4740126,4739871,4739467,4739001,4738632	Putative phosphate transporter homolog type A-2, splice variant a, similar to yeast Pho84 H+/Pi symporter; clusters with PTA3 and PTA4 on scaffold 14. Possibly a non-functional transcript; corresponds to gi 21218041 dbj AB074875.1
chr16	7460958	7468474	7461167	7468439	-	Cre16.g686846.t1.1	Cre16.g686846.t1.1		7465897,7465615,7462400,7462168,7461842,7460958	7468474,7465763,7465464,7462264,7462035,7461741	
chr16	4727110	4734025	4729733	4733322	-	PTA4	Cre16.g686850.t1.2		4733194,4733055,4732668,4732463,4732192,4731804,4731464,4731235,4730866,4730307,4729994,4727110	4734025,4733100,4732820,4732535,4732247,4731984,4731646,4731347,4731051,4730631,4730130,4729823	Putative phosphate transporter homolog type A-4, similar to yeast Pho84 H+/Pi symporter; clusters with PTA2 and PTA3 on scaffold 14.
chr16	4725848	4727035	4726334	4726710	-	Cre16.g686900.t1.2	Cre16.g686900.t1.2		4726903,4725848	4727035,4726831	
chr16	4716416	4725837	4716677	4725616	+	CTF18	Cre16.g686950.t1.2		4716416,4718018,4718502,4718839,4719167,4719751,4720024,4720374,4720743,4721152,4721689,4722063,4722628,4723058,4723356,4723852,4724119,4724429,4725145	4717802,4718343,4718625,4718928,4719412,4719810,4720120,4720498,4720917,4721423,4721835,4722296,4722737,4723118,4723529,4723935,4724239,4724973,4725837	CTF18-related; an RFC complex required for sister chromatid cohesion contains the RFC1-like Ctf18 subunit.
chr16	7468522	7476244	7468997	7475819	-	Cre16.g686958.t1.1	Cre16.g686958.t1.1		7476122,7474224,7472948,7472663,7470413,7470178,7469830,7468522	7476244,7475971,7474122,7472814,7472514,7470274,7470023,7469604	
chr16	7468522	7476244	7468997	7475819	-	Cre16.g686958.t2.1	Cre16.g686958.t2.1		7476122,7474224,7472957,7472663,7470413,7470178,7469830,7468522	7476244,7475971,7474122,7472814,7472514,7470274,7470023,7469604	
chr16	4710247	4716315	4710964	4716139	-	Cre16.g687000.t1.1	Cre16.g687000.t1.1		4716062,4715672,4715318,4714872,4714424,4713589,4713203,4712694,4712475,4712206,4710247	4716315,4715792,4715449,4715015,4714467,4714267,4713307,4712783,4712552,4712311,4711284	
chr16	4703314	4709889	4704385	4709167	-	Cre16.g687050.t1.1	Cre16.g687050.t1.1		4707874,4703314	4709889,4707364	
chr16	4701790	4703230	4701834	4702822	+	Cre16.g687060.t1.2	Cre16.g687060.t1.2		4701790	4703230	
chr16	7478595	7482516	7479165	7482468	+	Cre16.g687070.t1.1	Cre16.g687070.t1.1		7478595,7480879,7482453	7480728,7482255,7482516	
chr16	7478595	7482516	7479165	7482468	+	Cre16.g687070.t2.1	Cre16.g687070.t2.1		7478595,7479415,7480879,7482453	7479351,7480728,7482255,7482516	
chr16	4698860	4701680	4698993	4700984	+	Cre16.g687100.t1.1	Cre16.g687100.t1.1		4698860,4699408,4699610,4699924,4700460	4699206,4699478,4699811,4700200,4701680	
chr16	4694960	4698751	4695058	4698490	+	Cre16.g687117.t1.2	Cre16.g687117.t1.2		4694960,4695500,4697088,4697670,4698145	4695278,4696737,4697233,4697802,4698751	
chr16	4690470	4694791	4690597	4693766	+	Cre16.g687150.t1.1	Cre16.g687150.t1.1		4690470,4691108,4691450	4690779,4691159,4694791	
chr16	7482565	7488714	7484371	7488083	-	Cre16.g687182.t1.1	Cre16.g687182.t1.1		7488615,7487996,7487811,7487525,7487125,7486718,7486336,7485824,7485286,7484887,7482565	7488714,7488086,7487870,7487626,7487247,7486895,7486499,7486131,7485640,7485006,7484635	
chr16	4687494	4690359	4688352	4690298	-	Cre16.g687200.t1.1	Cre16.g687200.t1.1		4690292,4690168,4689997,4689326,4687494	4690359,4690205,4690097,4689456,4688562	
chr16	7488761	7489919	7489462	7489890	-	Cre16.g687294.t1.1	Cre16.g687294.t1.1		7489575,7488761	7489919,7489489	
chr16	4670130	4673168	4670240	4672832	+	CPLD61	Cre16.g687300.t1.2		4670130,4670426,4670596,4670817,4671569,4671895,4672261,4672700	4670267,4670465,4670633,4670955,4671630,4671949,4672385,4673168	
chr16	4673174	4687429	4673786	4687396	-	Cre16.g687301.t1.1	Cre16.g687301.t1.1		4687338,4687166,4686726,4686345,4685947,4685569,4685258,4684671,4684267,4683872,4683130,4682552,4682277,4681923,4681524,4681070,4680366,4679857,4679185,4678839,4678149,4677684,4677080,4676452,4676230,4675843,4674941,4674522,4673174	4687429,4687260,4686962,4686497,4686177,4685697,4685341,4684788,4684406,4684007,4683308,4682890,4682411,4682084,4681667,4681304,4680769,4680072,4679421,4678989,4678224,4677887,4677206,4676562,4676325,4676011,4675509,4674648,4674205	SNF2-related helicase, ChromDB CHR3425; similar to TBP-associated factor 172
chr16	4662901	4670018	4663882	4669882	-	Cre16.g687350.t1.2	Cre16.g687350.t1.2		4669714,4668886,4668443,4667891,4667490,4667090,4666780,4666391,4666080,4665689,4665263,4664760,4664398,4662901	4670018,4669003,4668575,4667978,4667636,4667236,4666885,4666515,4666142,4665790,4665382,4664912,4664550,4664158	
chr16	4656650	4662413	4657349	4661295	+	Cre16.g687400.t1.1	Cre16.g687400.t1.1		4656650,4657603,4658068,4658677,4659017	4657355,4657956,4658317,4658869,4662413	
chr16	7488761	7497906	7489489	7497727	-	Cre16.g687406.t1.1	Cre16.g687406.t1.1		7497647,7497329,7497115,7496817,7496571,7496255,7496004,7495660,7495446,7495137,7494832,7494635,7494355,7494024,7493811,7493604,7493375,7493142,7492907,7492638,7492088,7491951,7491695,7491500,7490643,7489575,7488761	7497906,7497566,7497233,7496985,7496624,7496390,7496119,7495866,7495529,7495233,7495031,7494700,7494504,7494230,7493870,7493711,7493431,7493276,7493035,7492769,7492180,7491989,7491837,7491585,7490735,7490414,7489489	
chr16	7489969	7497906	7491324	7497727	-	Cre16.g687406.t3.1	Cre16.g687406.t3.1		7497647,7497329,7497115,7496817,7496571,7496255,7496004,7495660,7495446,7495137,7494832,7494635,7494355,7494024,7493811,7493604,7493375,7493142,7492907,7492638,7492088,7491951,7491695,7491500,7489969	7497906,7497566,7497233,7496985,7496624,7496390,7496119,7495866,7495529,7495233,7495031,7494700,7494504,7494230,7493870,7493711,7493431,7493276,7493035,7492769,7492180,7491989,7491837,7491585,7491395	
chr16	7488761	7494364	7489489	7494337	-	Cre16.g687406.t2.1	Cre16.g687406.t2.1		7494331,7494024,7493811,7493604,7493375,7493142,7492907,7492638,7492088,7491951,7491695,7491500,7490643,7489575,7488761	7494364,7494230,7493870,7493711,7493431,7493276,7493035,7492769,7492180,7491989,7491837,7491585,7490735,7490414,7489489	
chr16	4647920	4656500	4648327	4655428	+	CPLD54	Cre16.g687450.t1.2		4647920,4648800,4649232,4649748,4650314,4650635,4651099,4651531,4651824,4652128,4652339,4652723,4653355,4653825,4654331,4654963	4648461,4648899,4649348,4649918,4650379,4650748,4651254,4651635,4651903,4652164,4652425,4652953,4653522,4653994,4654532,4656500	Conserved in the Plant Lineage and Diatoms
chr16	4641230	4647066	4641310	4646349	+	ARP2	Cre16.g687500.t1.1		4641230,4641620,4642377,4642752,4643168,4643566,4644029,4644488,4645223,4645822,4646268	4641361,4641733,4642462,4642891,4643229,4643652,4644130,4644664,4645402,4645926,4647066	ChromDB ARP3404, similar to Arp2 of the Arp2/3 complex
chr16	7498005	7501390	7498085	7500784	+	Cre16.g687518.t1.1	Cre16.g687518.t1.1		7498005,7498504,7498795,7499202,7499677,7500107,7500350,7500667	7498351,7498588,7498859,7499316,7499810,7500200,7500481,7501390	
chr16	4638214	4641129	4638648	4640711	-	CGL99	Cre16.g687550.t1.1		4639952,4639606,4639239,4638960,4638214	4641129,4639680,4639337,4639055,4638789	Conserved in the Green Lineage
chr16	4622853	4635659	4623699	4635506	-	Cre16.g687600.t1.1	Cre16.g687600.t1.1		4635491,4635140,4634841,4634563,4634214,4633829,4630136,4627619,4626672,4626444,4622853	4635659,4635370,4634959,4634637,4634265,4633992,4633571,4629966,4627316,4626540,4626255	
chr16	4635804	4637169	4636014	4636427	-	Cre16.g687602.t1.1	Cre16.g687602.t1.1		4636209,4635804	4637169,4636081	
chr16	7501449	7505184	7501696	7504547	-	Cre16.g687630.t1.1	Cre16.g687630.t1.1		7504635,7503688,7502891,7502095,7501868,7501449	7505184,7504556,7503515,7502741,7501977,7501696	
chr16	7501449	7505334	7501696	7504547	-	Cre16.g687630.t2.1	Cre16.g687630.t2.1		7504635,7503688,7502891,7502095,7501868,7501449	7505334,7504556,7503515,7502741,7501977,7501696	
chr16	4617840	4620431	4618231	4620173	+	ANK20	Cre16.g687650.t1.1		4617840,4618506,4618728,4619121,4619477,4619664,4620027	4618267,4618522,4618828,4619245,4619503,4619763,4620431	protein of unknown function with ankyrin repeats
chr16	4620434	4622129	4621328	4622079	-	Cre16.g687652.t1.1	Cre16.g687652.t1.1		4621608,4620434	4622129,4621508	
chr16	4613200	4617346	4613458	4616460	+	Cre16.g687700.t1.2	Cre16.g687700.t1.2		4613200,4614608,4615001,4615775,4616125	4614470,4614841,4615641,4615985,4617346	
chr16	7505475	7510652	7505857	7509988	+	Cre16.g687742.t1.1	Cre16.g687742.t1.1		7505475,7506341,7506830,7507243,7507655,7507947,7508854,7509131,7509583,7509862	7505912,7506498,7506907,7507391,7507721,7508648,7508925,7509355,7509687,7510652	
chr16	4606454	4610909	4606962	4610429	-	Cre16.g687750.t1.2	Cre16.g687750.t1.2		4610371,4610209,4609751,4609345,4609013,4608534,4608193,4607922,4607525,4607341,4606454	4610909,4610225,4610056,4609402,4609104,4608617,4608309,4607983,4607698,4607398,4607037	
chr16	4597497	4605419	4598564	4605086	-	PTK22	Cre16.g687800.t1.1		4605055,4604762,4604274,4604001,4603827,4603613,4602876,4602384,4602126,4601737,4600346,4599915,4599671,4599368,4599061,4597497	4605419,4604982,4604671,4604069,4603899,4603687,4603381,4602513,4602261,4601999,4601592,4600167,4599736,4599515,4599170,4598909	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr16	4593327	4597449	4593752	4597311	-	Cre16.g687850.t1.1	Cre16.g687850.t1.1		4597086,4596553,4596004,4594440,4593327	4597449,4596711,4596316,4595797,4594151	Was initially annotated as part of protein kinase PTK22, but model was later split
chr16	7511834	7517040	7511950	7515980	+	FAP5	Cre16.g687854.t1.1		7511834,7512084,7512515,7513472,7513913,7514432,7514805,7515177,7515572	7511995,7512135,7513177,7513615,7514031,7514511,7514955,7515308,7517040	Originally identified as part of Flagellar Associated Protein FAP5 [PMID: 15998802], but gene model was later split
chr16	4587811	4590628	4588326	4590588	-	LHCA7	Cre16.g687900.t1.2		4590388,4590111,4589805,4589384,4588965,4588719,4588490,4587811	4590628,4590153,4589957,4589486,4589059,4588781,4588536,4588348	
chr16	4590684	4592589	4590871	4592443	-	Cre16.g687901.t1.1	Cre16.g687901.t1.1		4592186,4590684	4592589,4592093	
chr16	4582778	4586359	4583529	4586210	-	ETF1	Cre16.g687950.t1.2		4586129,4585846,4585613,4585447,4585173,4584928,4584507,4584159,4583946,4582778	4586359,4586022,4585692,4585486,4585264,4584997,4584697,4584297,4584032,4583664	electron transfer flavoprotein alpha-subunit-like, mitochondrial; The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).
chr16	7518425	7525646	7518540	7524946	+	FAP5	Cre16.g687966.t1.1		7518425,7518950,7519252,7519757,7520046,7520426,7520728,7521049,7522022,7522305,7522849,7523678,7524385,7524781	7518711,7519051,7519596,7519829,7520245,7520602,7520892,7521768,7522177,7522601,7523469,7524175,7524618,7525646	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802].  Possible kinesin;  C-terminus is similar to Nephrocystin 3
chr16	4577644	4582219	4578256	4581934	-	MCP2	Cre16.g688000.t1.1		4581889,4581571,4581297,4580972,4580445,4580192,4579944,4579505,4578994,4577644	4582219,4581745,4581412,4581077,4580608,4580224,4580015,4579633,4579221,4578808	
chr16	4572614	4577309	4574060	4576878	-	Cre16.g688050.t1.1	Cre16.g688050.t1.1		4576845,4576310,4575393,4574674,4572614	4577309,4576601,4576173,4574857,4574282	
chr16	7525849	7529124	7526550	7528621	-	Cre16.g688078.t1.1	Cre16.g688078.t1.1		7528945,7525849	7529124,7528819	
chr16	4559925	4560849	4560023	4560645	-	Cre16.g688100.t1.2	Cre16.g688100.t1.2		4559925	4560849	
chr16	7529175	7536774	7530269	7536671	-	Cre16.g688190.t1.1	Cre16.g688190.t1.1		7536446,7535986,7535605,7535325,7535053,7534694,7534404,7534011,7533572,7533092,7532761,7532398,7531974,7531417,7531124,7530799,7530551,7529175	7536774,7536042,7535859,7535459,7535181,7534870,7534542,7534189,7533799,7533385,7532901,7532652,7532219,7531767,7531204,7530894,7530658,7530407	
chr16	4563817	4566469	4564272	4565149	-	Cre16.g688200.t1.1	Cre16.g688200.t1.1		4566216,4565476,4565129,4564824,4563817	4566469,4566022,4565299,4564851,4564446	
chr16	4563817	4566469	4564272	4565149	-	Cre16.g688200.t2.1	Cre16.g688200.t2.1		4566216,4565476,4565129,4564824,4563817	4566469,4566022,4565304,4564851,4564446	
chr16	4566580	4570474	4566823	4570028	+	Cre16.g688201.t1.1	Cre16.g688201.t1.1		4566580,4568665,4569086,4569475,4569687	4567138,4568699,4569246,4569534,4570474	
chr16	4566580	4570474	4569676	4570028	+	Cre16.g688201.t2.1	Cre16.g688201.t2.1		4566580,4568665,4569086,4569475	4567138,4568729,4569246,4570474	
chr16	4570800	4571791	4571006	4571628	+	Cre16.g688202.t1.1	Cre16.g688202.t1.1		4570800	4571791	
chr16	4561177	4563369	4561623	4561975	-	Cre16.g688250.t1.2	Cre16.g688250.t1.2		4563217,4562377,4561177	4563369,4562565,4562176	
chr16	7536931	7540466	7537137	7539133	+	Cre16.g688302.t1.1	Cre16.g688302.t1.1		7536931,7537511,7537664,7537844,7538171,7538394,7538740,7539016	7537404,7537540,7537721,7537934,7538282,7538595,7538849,7540466	
chr16	4550644	4557419	4551521	4557144	-	Cre16.g688350.t1.1	Cre16.g688350.t1.1		4557074,4554530,4554064,4553480,4552942,4552137,4550644	4557419,4554589,4554335,4553887,4553103,4552692,4551769	
chr16	7540670	7542394	7541372	7542291	-	Cre16.g688414.t1.1	Cre16.g688414.t1.1		7542050,7541865,7540670	7542394,7541929,7541720	
chr16	3646940	3650148	3647924	3650027	-	CFAP298	Cre16.g688450.t1.2		3650006,3649658,3649422,3649195,3648842,3648449,3648199,3646940	3650148,3649907,3649489,3649224,3648970,3648610,3648264,3648032	Similar to C21orf59 (CTO59); identified in the Flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr16	3650266	3658317	3650453	3657624	+	Cre16.g688500.t1.1	Cre16.g688500.t1.1		3650266,3650653,3650940,3651266,3651558,3651840,3652140,3652520,3652873,3653172,3653422,3653689,3653864,3654551,3654968,3655396,3655586,3655790,3656372,3657059	3650540,3650694,3651105,3651423,3651680,3651932,3652277,3652691,3652946,3653264,3653541,3653742,3654292,3654786,3655262,3655488,3655668,3656152,3656953,3658317	
chr16	7542545	7552546	7542628	7551978	+	Cre16.g688526.t1.1	Cre16.g688526.t1.1		7542545,7542915,7543576,7543977,7544259,7544655,7544956,7545295,7545564,7545948,7546228,7546844,7547225,7547597,7547911,7548249,7548516,7549556,7549883,7550264,7550627,7550854,7551596,7551954	7542841,7542980,7543719,7544060,7544315,7544735,7545090,7545373,7545731,7546071,7546693,7547052,7547429,7547686,7548004,7548373,7549334,7549632,7550033,7550474,7550729,7551451,7551829,7552546	
chr16	3658366	3660578	3658512	3660102	+	GSTS1	Cre16.g688550.t1.2		3658366,3658690,3659087,3659331,3659614,3659965	3658599,3658804,3659184,3659441,3659722,3660578	
chr16	3663400	3668525	3664395	3666424	-	Cre16.g688600.t1.1	Cre16.g688600.t1.1		3668366,3667659,3666782,3666364,3665909,3664997,3663400	3668525,3667757,3667424,3666453,3666055,3665143,3664557	DNA repair protein, resembling the Xeroderma pignmentosum group G protein, XPGC, and Rad2 yeast homolog
chr16	3668680	3671344	3668937	3671288	-	Cre16.g688633.t1.2	Cre16.g688633.t1.2		3670595,3669903,3669374,3668680	3671344,3670298,3669520,3668937	
chr16	3668680	3671344	3668937	3671288	-	Cre16.g688633.t2.1	Cre16.g688633.t2.1		3670595,3669903,3669374,3668680	3671344,3670295,3669520,3668937	
chr16	7553486	7566427	7553613	7564196	+	CYG33	Cre16.g688638.t1.1		7553486,7553792,7554109,7554663,7554959,7555433,7556061,7558171,7562315,7562649,7563117,7563389	7553734,7553884,7554428,7554824,7555194,7555829,7557816,7562058,7562376,7562996,7563221,7566427	Similar to membrane guanylyl cyclase OlGC7 [Oryzias latipes]
chr16	3673748	3677655	3674070	3677543	-	MOT43	Cre16.g688650.t1.2		3677356,3676961,3676563,3676304,3675918,3675432,3674914,3674515,3673748	3677655,3677071,3676658,3676406,3675993,3675653,3675132,3674709,3674274	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr16	3677752	3683076	3677965	3681832	+	Cre16.g688700.t1.1	Cre16.g688700.t1.1		3677752,3678478,3678821,3679719,3680239,3680745,3681316,3681652	3678313,3678635,3679361,3679951,3680343,3681067,3681413,3683076	
chr16	3683490	3688835	3683795	3688706	-	Cre16.g688750.t1.2	Cre16.g688750.t1.2		3688497,3688123,3687680,3687289,3686849,3686576,3686006,3685443,3685195,3684701,3684355,3683490	3688835,3688258,3687781,3687435,3687034,3686701,3686211,3685749,3685251,3684873,3684481,3684005	
chr16	7566430	7569245	7566995	7569226	-	Cre16.g688751.t1.1	Cre16.g688751.t1.1		7569131,7568966,7568549,7566430	7569245,7569053,7568734,7568267	
chr16	3688966	3690718	3689064	3690027	+	Cre16.g688800.t1.2	Cre16.g688800.t1.2		3688966,3689977	3689596,3690718	
chr16	3690780	3697605	3691925	3697507	-	HPT2	Cre16.g688850.t1.1		3697492,3697235,3696966,3696490,3696222,3695828,3695392,3694759,3694547,3694036,3693727,3693401,3693032,3692620,3692254,3690780	3697605,3697430,3697086,3696601,3696328,3695955,3695552,3694922,3694603,3694213,3693789,3693526,3693160,3692722,3692387,3691958	membrane hexose-phosphate transporter, Major Facilitator Superfamily; similarity to bacterial uhpC protein, with dual transport and sensing role for glucose-6-phosphate, and to putative glycerol-3-phosphate transporter of Cyanidioschyzon merolae (CMQ264C); this is HPT2a, the most abundant of two splicing isoform
chr16	7569300	7576125	7569506	7576079	-	Cre16.g688863.t1.1	Cre16.g688863.t1.1		7575841,7575372,7574993,7574612,7574312,7573874,7573406,7573036,7572432,7571910,7571631,7571387,7571024,7570669,7570226,7569300	7576125,7575489,7575031,7574680,7574348,7573930,7573623,7573142,7572597,7572088,7571693,7571446,7571146,7570910,7570349,7570168	
chr16	3697706	3707267	3697771	3706845	+	CYG68	Cre16.g688900.t1.1		3697706,3697952,3703017,3703831,3705089,3706036,3706448,3706650	3697867,3702918,3703622,3704818,3705646,3706266,3706507,3707267	
chr16	3707346	3721970	3707573	3719948	+	Cre16.g688901.t1.2	Cre16.g688901.t1.2		3707346,3708029,3708512,3708988,3709459,3709788,3710181,3710320,3711151,3711550,3711793,3712288,3713972,3714299,3714688,3715045,3715322,3715569,3715939,3716343,3716716,3716957,3717231,3719321	3707580,3708164,3708608,3709047,3709478,3709836,3710211,3710770,3711205,3711618,3711922,3712886,3714015,3714383,3714811,3715116,3715374,3715584,3716032,3716461,3716722,3717095,3719180,3721970	
chr16	3722030	3724725	3722598	3724522	-	Cre16.g688950.t1.2	Cre16.g688950.t1.2		3724335,3724015,3723765,3723480,3722030	3724725,3724171,3723825,3723561,3723302	
chr16	7576226	7578746	7576598	7578020	+	Cre16.g688975.t1.1	Cre16.g688975.t1.1		7576226,7576719,7577037,7577274,7577504	7576598,7576826,7577121,7577377,7578746	
chr16	3728430	3731902	3728556	3729757	+	Cre16.g689001.t1.1	Cre16.g689001.t1.1		3728430,3728682,3729002,3729232,3729574	3728559,3728908,3729040,3729385,3731902	
chr16	3731914	3740006	3732645	3739863	-	Cre16.g689050.t1.1	Cre16.g689050.t1.1		3739678,3739395,3739001,3738579,3738142,3737635,3737251,3736884,3736536,3736169,3735479,3734772,3734179,3733534,3733214,3731914	3740006,3739508,3739094,3738655,3738226,3737859,3737337,3736949,3736661,3736266,3735554,3734948,3734441,3733817,3733325,3732784	
chr16	7579126	7583937	7579483	7582594	+	Cre16.g689087.t1.1	Cre16.g689087.t1.1		7579126,7579481,7579812,7580026,7580309,7580570,7581027,7581416,7581818,7582145,7582529	7579210,7579597,7579901,7580097,7580356,7580657,7581226,7581577,7581967,7582217,7583937	
chr16	3740054	3744069	3740419	3743929	-	PUS6	Cre16.g689100.t1.1		3743780,3743443,3743059,3742471,3741967,3741374,3741062,3740839,3740054	3744069,3743517,3743149,3742855,3742292,3741682,3741166,3740929,3740598	
chr16	3744220	3749141	3744442	3748367	+	SQD3	Cre16.g689150.t1.2		3744220,3744771,3745179,3745625,3745924,3746232,3746520,3746806,3747187,3747507,3748207	3744624,3744867,3745274,3745755,3746020,3746273,3746646,3746933,3747285,3747895,3749141	sulfolipid synthase, adds sulfoquinovose to diacylglycerol to produce the plant sulfolipid, sulfoquinovosyldiacylglycerol
chr16	7583986	7584967	7584025	7584295	+	Cre16.g689199.t1.1	Cre16.g689199.t1.1		7583986,7584110	7584029,7584967	
chr16	3751110	3753171	3751864	3752393	+	Cre16.g689201.t1.1	Cre16.g689201.t1.1		3751110,3751477,3752247	3751373,3751943,3753171	
chr16	3753670	3766021	3753931	3765325	+	GTR23	Cre16.g689250.t1.1		3753670,3754514,3754887,3757300,3757758,3758889,3759232,3759736,3760081,3760482,3761006,3761295,3761856,3762166,3762469,3762780,3763153,3763696,3764157,3764402,3764910,3765189	3754117,3754601,3755068,3757452,3758511,3759025,3759490,3759884,3760242,3760630,3761105,3761387,3761935,3762230,3762530,3762837,3763343,3763860,3764209,3764545,3764978,3766021	belongs to the family of glycosyltransferases, might be a sulfolipid synthase; partial sequence similar to N-acetylglucosaminyltransferase complex, required for phosphatidylinositol biosynthesis
chr16	3766580	3776252	3767342	3773477	+	Cre16.g689300.t1.1	Cre16.g689300.t1.1		3766580,3770536,3771145,3771550,3771935,3772171,3772696,3773060,3773294	3770360,3770934,3771303,3771722,3772040,3772542,3772921,3773166,3776252	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr16	7585036	7586817	7585163	7586143	+	Cre16.g689311.t1.1	Cre16.g689311.t1.1		7585036,7585513	7585295,7586817	
chr16	3776590	3778561	3776782	3778514	+	Cre16.g689376.t1.1	Cre16.g689376.t1.1		3776590,3777384,3777964,3778148,3778262,3778446	3776818,3777484,3778052,3778193,3778332,3778561	
chr16	7587066	7590277	7587181	7590222	+	Cre16.g689423.t1.1	Cre16.g689423.t1.1		7587066,7587413,7587602,7588009,7588617,7588932,7589358,7589822,7590189	7587260,7587496,7587693,7588251,7588730,7589076,7589404,7589974,7590277	
chr16	3784434	3790329	3785349	3789530	-	Cre16.g689450.t1.2	Cre16.g689450.t1.2		3789494,3789355,3788809,3788350,3787633,3785710,3784434	3790329,3789423,3788994,3788559,3787848,3787374,3785349	
chr16	3793590	3802471	3795070	3800918	+	Cre16.g689500.t1.1	Cre16.g689500.t1.1		3793590,3794412,3794991,3795175,3795289,3795473,3796255,3796828,3797240,3797879,3798872,3798947,3799168,3800229	3793845,3794512,3795079,3795220,3795359,3796089,3796703,3797093,3797522,3798714,3798879,3799034,3800065,3802471	
chr16	7612470	7621505	7612881	7621235	-	Cre16.g689535.t1.1	Cre16.g689535.t1.1		7621031,7620607,7619989,7618908,7617826,7617450,7617205,7616409,7615561,7615158,7614010,7612470	7621505,7620682,7620160,7619883,7618645,7617565,7617264,7617063,7615615,7615291,7614980,7612881	
chr16	3802560	3811112	3802914	3808699	+	PTK8	Cre16.g689550.t1.1		3802560,3805729,3806245,3806586,3807003,3807348,3807798,3808177,3808411	3805485,3806001,3806433,3806905,3807108,3807644,3808023,3808283,3811112	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr16	3811712	3814291	3811936	3813827	+	FAP73	Cre16.g689600.t1.2		3811712,3812047,3812646,3813058,3813278,3813599	3811971,3812418,3812790,3813123,3813358,3814291	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; MIA2 subunit of the modifier of inner arms (MIA) complex
chr16	7622846	7633067	7622989	7632322	+	AGO3	Cre16.g689647.t1.1		7622846,7623082,7624002,7624304,7624634,7625000,7625310,7625778,7626252,7626689,7627087,7627374,7627648,7628012,7628429,7628692,7629124,7629426,7629727,7630265,7630586,7631186,7631463,7631901,7632175	7623011,7623129,7624157,7624407,7624762,7625045,7625560,7625954,7626386,7626874,7627190,7627493,7627756,7628181,7628495,7628955,7629204,7629541,7629978,7630328,7630728,7631276,7631575,7631967,7633067	The most highly expressed of three AGO genes involved in sRNA mediated silencing; binds miRNAs and is required for translational repression by siRNA; more closely related to other Chlamydomonas AGO than to any plant homolog;
chr16	3814294	3816219	3814958	3816103	-	ATG8	Cre16.g689650.t1.2		3816057,3815903,3815741,3815402,3814294	3816219,3815958,3815793,3815520,3815089	Component of autophagosomes; unique ubiquitin-like protein whose conjugation target is lipid phosphatidylethanolamine (PE); Atg8p-PE is anchored to membranes, is involved in phagophore expansion, and may mediate membrane fusion during autophagosome formation; deconjugation of Atg8p-PE is required for efficient autophagosome biogenesis
chr16	3816320	3820881	3816349	3820097	+	Cre16.g689700.t1.1	Cre16.g689700.t1.1		3816320,3816582,3817122,3817593,3818036,3818331,3818858,3819203,3819597,3820004	3816420,3816867,3817235,3817679,3818100,3818445,3818953,3819296,3819733,3820881	
chr16	3822024	3823469	3822055	3823410	-	Cre16.g689733.t1.1	Cre16.g689733.t1.1		3823014,3822024	3823469,3822910	
chr16	7633070	7637565	7633357	7637448	-	Cre16.g689759.t1.1	Cre16.g689759.t1.1		7637394,7636915,7636403,7635839,7635171,7634869,7634093,7633731,7633070	7637565,7637227,7636534,7636002,7635377,7635011,7634437,7633901,7633463	
chr16	3825514	3827049	3825873	3826401	-	Cre16.g689766.t1.1	Cre16.g689766.t1.1		3826803,3826392,3825514	3827049,3826462,3826158	
chr16	3828810	3830691	3829163	3830312	+	Cre16.g689800.t1.2	Cre16.g689800.t1.2		3828810,3830300	3829955,3830691	
chr16	3832400	3843471	3832877	3843176	+	Cre16.g689851.t1.1	Cre16.g689851.t1.1		3832400,3834037,3835128,3836323,3837050,3837704,3838315,3839042,3839812,3840722,3841305,3841877,3842112,3842876	3833622,3834678,3835829,3836964,3837229,3837751,3838956,3839614,3840506,3840777,3841400,3841964,3842198,3843471	
chr16	3832400	3838361	3832877	3838315	+	Cre16.g689851.t2.1	Cre16.g689851.t2.1		3832400,3834037,3835128,3838315	3833622,3834682,3835829,3838361	
chr16	7637716	7646222	7637961	7645660	+	Cre16.g689871.t1.1	Cre16.g689871.t1.1		7637716,7638104,7638600,7639394,7639675,7640042,7640382,7640782,7641248,7641627,7642074,7642505,7642977,7643389,7644175,7644630,7645372	7637964,7638302,7638742,7639488,7639789,7640229,7640547,7641057,7641341,7641894,7642267,7642644,7643097,7643630,7644378,7645136,7646222	
chr16	3852144	3866369	3853001	3866153	-	Cre16.g689950.t1.2	Cre16.g689950.t1.2		3865957,3865629,3865184,3864773,3864501,3864090,3863803,3863480,3863114,3862687,3862047,3861111,3860534,3859918,3858956,3858593,3857041,3856759,3856200,3855836,3855383,3854950,3854378,3854026,3853563,3852144	3866369,3865726,3865336,3864946,3864575,3864311,3863949,3863567,3863229,3862749,3862391,3861869,3860910,3860129,3859352,3858695,3858150,3856827,3856314,3856031,3855487,3855091,3854692,3854103,3853685,3853094	
chr16	7646240	7648155	7647598	7648073	-	Cre16.g689983.t1.1	Cre16.g689983.t1.1		7648015,7647859,7646240	7648155,7647926,7647754	
chr16	3866470	3870531	3867295	3870035	+	CGL147	Cre16.g690000.t1.2		3866470,3867153,3868016,3868616,3868939,3869251,3869636	3866668,3867797,3868149,3868759,3869033,3869371,3870531	GT8 family protein, Conserved in the Green Lineage
chr16	3870580	3873901	3870597	3872723	+	HCS2	Cre16.g690050.t1.2		3870580,3870812,3870986,3871604,3872092,3872558	3870727,3870858,3871357,3871792,3872148,3873901	holocytochrome c1 synthetase cytochrome C1 heme lyase (CC1HL) [PMID: 14514677]; related to animal cyt c biogenesis pathways
chr16	7648776	7673567	7649155	7672575	+	Cre16.g690095.t1.1	Cre16.g690095.t1.1		7648776,7649364,7649813,7650118,7650512,7650925,7651417,7651986,7652502,7652969,7653205,7653638,7654030,7654577,7655015,7655386,7655745,7656350,7656854,7657317,7657659,7658037,7658634,7658985,7659535,7660138,7660476,7660959,7661299,7661677,7661994,7662454,7662674,7663231,7663569,7663965,7664475,7665181,7665542,7666711,7667029,7667553,7668738	7649162,7649576,7649929,7650210,7650645,7651038,7651733,7652189,7652649,7653029,7653337,7653756,7654379,7654798,7655159,7655543,7656090,7656636,7656982,7657490,7657903,7658194,7658802,7659281,7659619,7660256,7660728,7661117,7661481,7661802,7662155,7662551,7662998,7663299,7663751,7664171,7664703,7665377,7666480,7666797,7667379,7668530,7673567	
chr16	3873950	3875701	3874211	3875630	+	FAP213	Cre16.g690100.t1.2		3873950,3874775,3875111,3875582	3874484,3874846,3875248,3875701	Flagellar Associated Protein, coiled coil; found in the flagellar proteome
chr16	3875703	3878299	3876640	3878215	-	Cre16.g690130.t1.2	Cre16.g690130.t1.2		3877973,3877835,3877389,3876991,3875703	3878299,3877883,3877455,3877112,3876724	
chr16	3878354	3882819	3878567	3882761	-	ALG6	Cre16.g690150.t1.2		3882652,3882477,3882189,3881566,3880995,3880482,3880005,3879549,3879110,3878354	3882819,3882561,3882258,3881695,3881336,3880645,3880097,3879830,3879322,3878891	adds glucose to Man 8 on N-glycans
chr16	3882874	3887699	3883637	3887568	-	OXA1	Cre16.g690200.t1.2		3887068,3886476,3885833,3885472,3884889,3884508,3884077,3882874	3887699,3886566,3885889,3885531,3885005,3884680,3884248,3883817	Belongs to YidC/Alb3/Oxa1 family; mediates insertion of Cox1 subunit of cytochrome oxydase
chr16	7673600	7674705	7673832	7674392	-	Cre16.g690207.t1.1	Cre16.g690207.t1.1		7674532,7674337,7674158,7673600	7674705,7674426,7674247,7674068	
chr16	7673600	7674745	7673832	7674392	-	Cre16.g690207.t2.1	Cre16.g690207.t2.1		7674726,7674532,7674337,7674158,7673600	7674745,7674606,7674426,7674247,7674068	
chr16	7673600	7674745	7673832	7674213	-	Cre16.g690207.t3.1	Cre16.g690207.t3.1		7674726,7674532,7674158,7673600	7674745,7674606,7674247,7674068	
chr16	3887814	3891369	3887953	3891242	-	PUS18	Cre16.g690250.t1.2		3891005,3890683,3890279,3889823,3889424,3889041,3888527,3887814	3891369,3890816,3890333,3889918,3889523,3889117,3888670,3888301	
chr16	3891470	3893911	3891535	3892977	+	Cre16.g690300.t1.2	Cre16.g690300.t1.2		3891470,3892168,3892506,3892935	3891818,3892274,3892607,3893911	
chr16	7674846	7680007	7675057	7678789	+	Cre16.g690319.t1.1	Cre16.g690319.t1.1		7674846,7675213,7675437,7675819,7676506,7676880,7677172,7677548,7678206,7678630	7675083,7675291,7675528,7675933,7676571,7676951,7677450,7677903,7678425,7680007	
chr16	3893914	3899029	3895261	3898861	-	SNR6	Cre16.g690350.t1.1		3898483,3897944,3897179,3896578,3896142,3895776,3893914	3899029,3898075,3897268,3896790,3896265,3895861,3895420	
chr16	3899170	3903693	3899403	3902896	+	DNJ5	Cre16.g690400.t1.1		3899170,3900119,3900568,3901072,3901394,3901689,3902033,3902563	3899889,3900256,3900797,3901129,3901511,3901869,3902249,3903693	DnaJ-like protein; similar to Q4DN1 from Trypanosoma cruzi; TargetP predicts both proteins to secretory pathway (reliability score 1 for T. cruzi, score 3 for DNJ5); contains C-terminal J-domain (pfam226)
chr16	7680429	7683315	7681255	7683077	-	Cre16.g690431.t1.1	Cre16.g690431.t1.1		7683269,7681990,7680429	7683315,7683145,7681653	
chr16	7680429	7683315	7681255	7683077	-	Cre16.g690431.t2.1	Cre16.g690431.t2.1		7681990,7680429	7683315,7681653	
chr16	3903700	3909799	3903896	3909505	-	FAP266	Cre16.g690450.t1.1		3909484,3909062,3908538,3907543,3906943,3906600,3905807,3905269,3904666,3903700	3909799,3909259,3908718,3907786,3907165,3906709,3906032,3905460,3905054,3904398	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr16	3909920	3911831	3909986	3910979	+	NHP2	Cre16.g690500.t1.2		3909920,3910343,3910817	3910207,3910448,3911831	Structural Component of H/ACA snoRNPs which catalyze the snoRNA-guided pseudouridylation of the pre-rRNA and other RNA molecules; possesses homology to ribosomal protein L7
chr16	3912004	3915479	3912991	3914256	-	Cre16.g690506.t1.1	Cre16.g690506.t1.1		3915303,3914890,3913486,3912004	3915479,3915110,3914700,3913034	
chr16	3912004	3915479	3912991	3914256	-	Cre16.g690506.t2.1	Cre16.g690506.t2.1		3915303,3915042,3913486,3912004	3915479,3915110,3914700,3913034	
chr16	3915630	3916521	3915862	3916076	+	Cre16.g690507.t1.1	Cre16.g690507.t1.1		3915630	3916521	
chr16	3917033	3918227	3917377	3918132	-	Cre16.g690508.t1.1	Cre16.g690508.t1.1		3918067,3917635,3917033	3918227,3917676,3917543	
chr16	3943218	3947059	3943275	3945265	+	Cre16.g690509.t1.1	Cre16.g690509.t1.1		3943218,3945204	3943691,3947059	
chr16	7683466	7684017	7683683	7683894	+	Cre16.g690543.t1.1	Cre16.g690543.t1.1		7683466	7684017	
chr16	7684019	7693235	7685090	7692479	-	Cre16.g690655.t1.1	Cre16.g690655.t1.1		7692894,7692172,7690869,7690524,7688562,7688293,7685926,7685483,7684019	7693235,7692642,7692028,7690671,7690303,7688409,7688166,7685772,7685238	
chr16	780498	783733	780868	783541	-	Cre16.g690700.t1.1	Cre16.g690700.t1.1		783420,783100,782810,782418,782081,781801,781593,781398,781177,780498	783733,783328,782861,782519,782125,781881,781706,781469,781220,780923	
chr16	784804	785449	784929	785401	+	Cre16.g690702.t1.1	Cre16.g690702.t1.1		784804,785215	785007,785449	
chr16	773934	780495	774059	780252	+	Cre16.g690750.t1.1	Cre16.g690750.t1.1		773934,774332,774447,774700,775029,775323,775595,775968,776520,776911,777360,777803,778113,778382,778662,779221,779895	774107,774354,774543,774779,775129,775375,775717,776101,776651,777100,777573,777903,778205,778423,778775,779433,780495	
chr16	773934	780495	774059	780252	+	Cre16.g690750.t2.1	Cre16.g690750.t2.1		773934,774332,774450,774700,775029,775323,775595,775968,776520,776911,777360,777803,778113,778382,778662,779221,779895	774107,774354,774543,774779,775129,775375,775717,776101,776651,777100,777573,777903,778205,778423,778775,779433,780495	
chr16	7693290	7697635	7693824	7697575	-	Cre16.g690767.t1.1	Cre16.g690767.t1.1		7697488,7697022,7696694,7696190,7695516,7694765,7694454,7693290	7697635,7697124,7696867,7696405,7695718,7694798,7694584,7694079	
chr16	772644	773885	773592	773827	+	Cre16.g690800.t1.1	Cre16.g690800.t1.1		772644,773176,773566	772999,773371,773885	
chr16	7697757	7703687	7697862	7701489	+	FAP173	Cre16.g690879.t1.1		7697757,7698278,7698523,7698792,7698993,7699275,7699601,7699869,7700076,7700533,7700705,7701035,7701199	7697879,7698345,7698627,7698802,7699079,7699399,7699641,7699879,7700205,7700559,7700790,7701065,7703687	has distribution Similar to IFT proteins but does not co-localize with IFT46
chr16	754294	758985	754561	758302	+	RBL8	Cre16.g690900.t1.2		754294,755074,755482,756024,756501,757007,757508,757903	754794,755200,755562,756111,756603,757117,757607,758985	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); lacks the catalytic Ser and hence probably inactive as a protease
chr16	771424	772525	771721	772264	+	Cre16.g690902.t1.1	Cre16.g690902.t1.1		771424,772178	772013,772525	
chr16	750448	753933	751014	753435	-	Cre16.g690950.t1.2	Cre16.g690950.t1.2		753174,752384,752036,750448	753933,753055,752158,751833	
chr16	7707610	7710115	7708177	7709885	-	Cre16.g690991.t1.1	Cre16.g690991.t1.1		7709854,7709143,7708769,7707610	7710115,7709668,7708832,7708636	
chr16	7707610	7710115	7708177	7709885	-	Cre16.g690991.t2.1	Cre16.g690991.t2.1		7709854,7709143,7708769,7707610	7710115,7709665,7708832,7708636	
chr16	746664	750445	746782	749768	+	EFP1	Cre16.g691000.t1.2		746664,747419,747956,748297,749046,749600	746889,747470,748069,748428,749123,750445	Putative organellar translation elongation factor P (EF-P)
chr16	731538	746473	732869	746389	-	Cre16.g691050.t1.2	Cre16.g691050.t1.2		746374,746160,745975,745560,745231,744951,744642,744157,743713,743222,742796,742262,741935,741374,740931,739821,739533,738728,738243,737649,735522,734509,734214,733913,731538	746473,746258,746073,745687,745432,745044,744805,744319,743951,743442,743054,742526,742054,741576,741194,740579,739633,739163,738431,737898,737302,735358,734350,734062,733715	
chr16	729178	731483	729404	731420	-	Cre16.g691100.t1.2	Cre16.g691100.t1.2		731410,731179,730659,730177,729764,729178	731483,731282,730727,730300,729843,729461	
chr16	729178	731483	729404	731420	-	Cre16.g691100.t2.1	Cre16.g691100.t2.1		731410,731179,730659,730177,729764,729178	731483,731282,730727,730279,729843,729461	
chr16	7710240	7712388	7710433	7711052	+	Cre16.g691103.t1.1	Cre16.g691103.t1.1		7710240,7710703,7710998	7710490,7710834,7712388	
chr16	725374	729021	726219	728111	+	Cre16.g691150.t1.2	Cre16.g691150.t1.2		725374,726115,726889,727217	725998,726702,727011,729021	
chr16	713633	721358	715153	720150	-	Cre16.g691200.t1.1	Cre16.g691200.t1.1		721192,720035,718492,715643,713633	721358,720291,719783,718330,715513	
chr16	721770	723058	722571	722815	-	Cre16.g691202.t1.1	Cre16.g691202.t1.1		721770	723058	
chr16	723329	724414	723534	723884	+	Cre16.g691204.t1.1	Cre16.g691204.t1.1		723329,723825	723649,724414	
chr16	723329	724414	723534	723884	+	Cre16.g691204.t2.1	Cre16.g691204.t2.1		723329,723831	723649,724414	
chr16	7712390	7715473	7714158	7715279	-	Cre16.g691215.t1.1	Cre16.g691215.t1.1		7715072,7714857,7714453,7712390	7715473,7714919,7714685,7714237	
chr16	7713987	7715473	7714158	7715279	-	Cre16.g691215.t2.1	Cre16.g691215.t2.1		7715072,7714857,7714453,7713987	7715473,7714919,7714685,7714237	
chr16	7715930	7719115	7716574	7719026	-	Cre16.g691327.t1.1	Cre16.g691327.t1.1		7718847,7718559,7718140,7717669,7715930	7719115,7718673,7718487,7717978,7717560	
chr16	703019	707838	703264	706626	+	Cre16.g691350.t1.1	Cre16.g691350.t1.1		703019,703640,703883,704213,704604,704945,705139,705498,705895,706136,706548	703301,703681,704097,704411,704806,704967,705344,705785,706003,706286,707838	
chr16	708123	710068	708845	709826	-	Cre16.g691351.t1.1	Cre16.g691351.t1.1		710060,709802,709454,709187,708123	710068,709944,709522,709240,708926	
chr16	710123	711208	710144	711170	-	Cre16.g691352.t1.1	Cre16.g691352.t1.1		711056,710622,710331,710123	711208,710740,710436,710144	
chr16	711486	713448	712005	713123	-	Cre16.g691353.t1.1	Cre16.g691353.t1.1		713123,712641,711486	713448,712781,712119	
chr16	695123	701078	695753	700674	-	Cre16.g691400.t1.1	Cre16.g691400.t1.1		698975,697793,695123	701078,698914,697558	
chr16	693911	695068	694516	694872	-	CSB63	Cre16.g691439.t1.2		694755,693911	695068,694639	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr16	7719169	7726495	7719489	7726341	-	FAP43	Cre16.g691440.t1.1		7726215,7726035,7725683,7723939,7720514,7719910,7719169	7726495,7726115,7725946,7725530,7723811,7720169,7719721	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; part of tether complex that constrains inner arm I1/f
chr16	686413	693588	687026	693497	-	Cre16.g691450.t1.2	Cre16.g691450.t1.2		693388,693252,693024,692821,692443,691890,691544,691180,690791,690203,689861,689556,689115,688674,688322,687472,686413	693588,693314,693138,692881,692599,691984,691648,691241,690858,690321,689931,689640,689306,688937,688430,687694,687171	
chr16	682653	686358	684015	686233	-	Cre16.g691500.t1.2	Cre16.g691500.t1.2		686119,685700,685295,684863,684493,682653	686358,685875,685417,684980,684540,684153	
chr16	679959	681718	680214	680747	+	Cre16.g691550.t1.2	Cre16.g691550.t1.2		679959,680747	680645,681718	
chr16	7726606	7733937	7726739	7732485	+	NDA1	Cre16.g691552.t1.1		7726606,7727306,7727491,7727756,7728154,7728514,7728861,7729611,7729752,7730491,7730671,7730987,7731286,7731564,7732027,7732425	7727027,7727329,7727611,7727862,7728234,7728550,7728967,7729648,7729854,7730532,7730761,7731141,7731411,7731629,7732212,7733937	NADH:quinone reductase (non-electrogenic); probably mitochondrial (by similarity to AT2G29990)
chr16	675553	678050	675737	676584	+	Cre16.g691600.t1.1	Cre16.g691600.t1.1		675553,676265	675754,678050	
chr16	7734530	7737685	7736285	7736520	-	Cre16.g691664.t1.1	Cre16.g691664.t1.1		7737090,7736918,7736766,7734530	7737685,7737024,7736804,7736549	
chr16	7734530	7737685	7736285	7736487	-	Cre16.g691664.t2.1	Cre16.g691664.t2.1		7737090,7736918,7736766,7734530	7737685,7737024,7736804,7736543	
chr16	656199	663031	656986	662214	+	AMI1	Cre16.g691750.t1.2		656199,656962,657201,657469,657841,658210,658550,658848,659123,659372,659657,659985,660207,660500,661176,661629,662082	656841,657019,657272,657563,657901,658294,658612,658934,659172,659435,659808,660027,660285,660648,661270,661736,663031	similar to plant formamidase (possibly acetamidase), not to yeast amidase
chr16	664173	665008	664582	664841	-	Cre16.g691753.t1.1	Cre16.g691753.t1.1		664173	665008	
chr16	671533	672908	671818	672554	-	Cre16.g691754.t1.1	Cre16.g691754.t1.1		671533	672908	
chr16	673563	674118	673777	674093	-	Cre16.g691755.t1.1	Cre16.g691755.t1.1		673563	674118	
chr16	674175	675458	674590	675161	-	Cre16.g691756.t1.1	Cre16.g691756.t1.1		674175	675458	
chr16	7738856	7741862	7739347	7741339	+	Cre16.g691776.t1.1	Cre16.g691776.t1.1		7738856,7739702,7739932,7740074,7740529,7740796,7740979,7741243	7739489,7739803,7739990,7740115,7740648,7740869,7741036,7741862	
chr16	646154	656039	646249	655051	+	FLVB	Cre16.g691800.t1.1		646154,646807,647447,647941,648313,648648,648952,649304,649784,650275,650614,651239,651747,652193,652675,653246,653798,654456,654976	646312,646872,647539,648017,648415,648782,648986,649458,649847,650388,650758,651286,651866,652343,652844,653314,653869,654608,656039	functions as a hetero-dimer with FLVA to reoxidize PSI acceptors and protect PSI against photoinhibition during transient/fluctuating illumination
chr16	644775	646048	645193	645936	-	COX90	Cre16.g691850.t1.2		645711,644775	646048,645286	Cytochrome c oxidase subunit Cox90, mitochondrial [gi:22001295]. Note: homologues not found in other organisms except other green algae. Identification based on mutant phenotype [PMID: 11498007]
chr16	7742616	7749585	7743416	7749377	-	Cre16.g691888.t1.1	Cre16.g691888.t1.1		7749137,7749023,7748484,7748261,7747972,7747688,7747436,7747148,7746994,7746464,7746259,7745939,7745692,7745303,7745071,7744771,7744515,7744317,7743955,7742616	7749585,7749065,7748794,7748324,7748005,7747790,7747505,7747209,7747033,7746555,7746300,7746070,7745740,7745367,7745138,7744876,7744576,7744369,7744156,7743819	
chr16	7742616	7749585	7743416	7749377	-	Cre16.g691888.t2.1	Cre16.g691888.t2.1		7749137,7749023,7748484,7748261,7747972,7747688,7747436,7747148,7746994,7746464,7746259,7745939,7745071,7744771,7744515,7744317,7743955,7742616	7749585,7749065,7748794,7748324,7748005,7747790,7747505,7747209,7747033,7746555,7746300,7746070,7745138,7744876,7744576,7744369,7744156,7743819	
chr16	637739	644555	637929	643973	+	PUS19	Cre16.g691900.t1.2		637739,638975,639437,639846,640133,640471,640700,641078,641447,641702,642227,642555,643093,643433,643760	638209,639087,639528,639959,640331,640519,640881,641167,641500,641843,642282,642713,643188,643522,644555	
chr16	633929	637660	634195	636698	+	Cre16.g691950.t1.1	Cre16.g691950.t1.1		633929,634704,635707	634375,635449,637660	
chr16	624079	632247	624162	631357	+	Cre16.g692000.t1.1	Cre16.g692000.t1.1		624079,624698,625153,625643,626158,626539,626878,627297,628307,628985,630516,631084	624341,624932,625389,625888,626340,626620,627052,628017,628646,630139,630649,632247	
chr16	632524	633028	632664	632989	-	Cre16.g692003.t2.1	Cre16.g692003.t2.1		632524	633028	
chr16	632263	633028	632664	632989	-	Cre16.g692003.t1.1	Cre16.g692003.t1.1		632263	633028	
chr16	7751214	7754279	7752694	7753805	-	DNJ21	Cre16.g692004.t1.1		7753975,7753354,7751214	7754279,7753852,7753197	DnaJ-like protein; contains N-terminal J-domain (pfam00226) and DnaJ_C, DnaJ C terminal region (pfam01556); similar to Q5MJ90_CHLRE Radial spoke protein 16, Arabidopsis Q8L8S5, and Giardia lamblia Q7R3P4
chr16	621152	623727	621433	622861	+	SYP3	Cre16.g692050.t1.1		621152,622579	622171,623727	Expressed Protein. Similar to SYP3/Syntaxin 5/Sed5p Qa-SNAREs, involved in Golgi vesicle trafficking
chr16	615238	621048	615880	620413	-	Cre16.g692100.t1.1	Cre16.g692100.t1.1		620109,619435,618964,617845,617515,616965,616698,616419,615238	621048,619902,619115,618730,617618,617187,616780,616538,616156	
chr16	7754341	7759946	7755303	7759705	-	Cre16.g692116.t1.1	Cre16.g692116.t1.1		7759392,7759140,7758889,7758647,7758396,7758062,7757566,7757285,7756877,7756614,7756262,7755994,7754341	7759946,7759270,7758999,7758742,7758566,7758207,7757743,7757380,7756949,7756756,7756336,7756089,7755837	
chr16	609763	615188	610279	614919	-	Cre16.g692150.t1.1	Cre16.g692150.t1.1		615157,614668,614304,614033,613490,613152,612611,612313,611810,611364,611004,610740,609763	615188,614929,614571,614104,613584,613330,612729,612375,611920,611425,611085,610816,610409	
chr16	609763	615188	610279	614919	-	Cre16.g692150.t2.1	Cre16.g692150.t2.1		615030,614668,614304,614033,613490,613152,612611,612313,611810,611364,611004,610740,609763	615188,614929,614571,614104,613584,613330,612729,612375,611920,611425,611085,610816,610409	
chr16	601758	609759	602471	608910	+	MMP6	Cre16.g692200.t1.1		601758,602416,602748,603146,603407,603885,604215,604549,604860,605323,605567,605978,606293,606935,607430,607798,608247,608638	601960,602580,602953,603229,603583,603987,604336,604617,605089,605392,605705,606068,606693,607032,607586,607979,608373,609759	Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein
chr16	7760047	7773294	7761743	7771910	+	Cre16.g692228.t1.1	Cre16.g692228.t1.1		7760047,7761013,7761179,7761521,7761654,7762043,7762630,7762942,7763183,7763542,7763830,7763988,7764484,7764954,7765205,7767209,7768075,7768332,7768563,7768802,7768925,7770036,7770208,7770378,7770550,7770964,7771218,7771487	7760433,7761071,7761261,7761548,7761916,7762450,7762781,7763044,7763410,7763719,7763871,7764323,7764799,7765099,7767097,7767934,7768137,7768439,7768604,7768855,7769029,7770096,7770263,7770397,7770724,7771026,7771322,7773294	
chr16	591049	600037	591363	598080	+	Cre16.g692250.t1.1	Cre16.g692250.t1.1		591049,591484,591641,591789,592280,592581,592830,596218,596463,597013,597738	591369,591546,591694,592125,592441,592690,595229,596361,596843,597591,600037	Basic-leucine zipper (bZIP) transcription factor
chr16	582927	590888	584361	590557	-	Cre16.g692300.t1.2	Cre16.g692300.t1.2		590395,590213,589876,589507,588951,588589,588166,587839,587530,587218,586910,586644,586124,585786,585406,582927	590888,590317,589961,589603,589014,588707,588287,587923,587606,587281,587031,586719,586411,585868,585583,585201	
chr16	7776633	7779626	7778142	7779529	-	Cre16.g692340.t1.1	Cre16.g692340.t1.1		7779423,7776633	7779626,7778435	
chr16	571763	582868	572390	582634	-	Cre16.g692350.t1.1	Cre16.g692350.t1.1		582579,582457,582048,581251,581041,580285,579909,579132,578512,577633,577334,575412,574472,573636,573358,572754,571763	582868,582501,582213,581836,581157,580448,580121,579570,578914,578237,577490,577190,575026,574348,573421,573184,572516	
chr16	565489	571759	565893	570899	+	Cre16.g692400.t1.1	Cre16.g692400.t1.1		565489,566520,566880,567409,568116,568609,569065,569552,570195,570695	565998,566581,566982,567501,568280,568710,569199,569707,570245,571759	
chr16	562075	565378	562875	564653	-	Cre16.g692450.t1.2	Cre16.g692450.t1.2		565191,564422,563989,563395,562075	565378,565064,564146,563668,563148	
chr16	7779721	7781236	7780675	7780862	-	Cre16.g692452.t1.1	Cre16.g692452.t1.1		7779721	7781236	
chr16	554291	561658	556924	561163	-	Cre16.g692500.t1.1	Cre16.g692500.t1.1		561150,560724,560561,560066,559034,558661,558174,557272,554291	561658,560908,560567,560228,559835,558855,558449,558004,557040	
chr16	543930	554218	544113	554146	-	MSH4	Cre16.g692550.t1.1		554017,553731,553277,553017,552708,552195,551924,551378,551099,550822,549923,549454,549184,548767,548396,548006,547214,546706,546399,545991,545735,545392,544538,543930	554218,553798,553394,553139,552849,552508,552048,551571,551184,550905,550498,549670,549272,548856,548488,548194,547513,546810,546509,546035,545823,545487,544760,544179	orthologous to AT4G17380, involved in the early steps of meiotic recombination
chr16	539793	543778	540503	543695	-	Cre16.g692585.t1.2	Cre16.g692585.t1.2		543389,542594,541051,540619,539793	543778,543267,542433,540665,540503	
chr16	531429	539640	531738	539047	+	ULP2	Cre16.g692600.t1.1		531429,532925,533447,533920,534366,534829,535390,535861,536489,537454,538157,538531,538894	532749,533173,533653,534000,534620,534978,535515,536004,536560,537579,538230,538582,539640	SUMO protease identified in mutant screen as SMT7 by Fang and Umen (28). [PMID; 18385113]. The smt7 mutants bypass the small-cell phenotype of mutants in the MAT3 locus, encoding a retinoblastoma tumor suppressor related protein
chr16	531429	539640	531738	539047	+	ULP2	Cre16.g692600.t2.1		531429,532958,533447,533920,534366,534829,535390,535861,536489,537454,538157,538531,538894	532749,533173,533653,534000,534620,534978,535515,536004,536560,537579,538230,538582,539640	SUMO protease identified in mutant screen as SMT7 by Fang and Umen (28). [PMID; 18385113]. The smt7 mutants bypass the small-cell phenotype of mutants in the MAT3 locus, encoding a retinoblastoma tumor suppressor related protein
chr16	525463	530902	526249	530557	-	CGL4	Cre16.g692650.t1.2		530527,530024,529674,529285,528755,528436,527959,527673,527395,527106,526820,525463	530902,530165,529764,529357,528898,528476,528076,527735,527450,527168,526923,526380	
chr16	521763	523494	521800	522263	+	Cre16.g692750.t1.1	Cre16.g692750.t1.1		521763	523494	
chr16	523543	525177	523577	524850	+	PDI3	Cre16.g692751.t1.1		523543,523810,523950,524117,524718	523694,523838,523969,524238,525177	This type of single domain protein disulfide isomerase appears specific to photosynthetic eukaryotes. PMID: 16143836
chr16	517643	521704	517989	521181	+	Cre16.g692800.t1.1	Cre16.g692800.t1.1		517643,518222,518636,518975,519569,519949,520237,520568,520850,521064	518044,518310,518716,519136,519630,519979,520308,520665,520907,521704	
chr16	494598	498104	494635	497550	+	Cre16.g692900.t1.2	Cre16.g692900.t1.2		494598,496645,497067	496315,496761,498104	
chr16	498129	505102	498751	504977	-	Cre16.g692901.t1.1	Cre16.g692901.t1.1		504719,504203,503823,502893,502586,502110,501712,501384,501013,500798,500376,500027,499676,499245,498129	505102,504301,503916,502945,502631,502218,501811,501470,501072,500862,500528,500117,499741,499349,498922	
chr16	505225	517202	506467	516604	-	Cre16.g692902.t1.1	Cre16.g692902.t1.1		516888,515988,515627,515277,514882,514472,514031,513579,513204,512810,512376,511960,510965,510592,509876,509321,508851,508382,507960,505225	517202,516767,515787,515408,515010,514561,514217,513778,513272,512906,512500,512128,511638,510675,510315,509502,508966,508537,508045,507680	
chr16	422275	425662	423347	425497	-	Cre16.g693200.t1.1	Cre16.g693200.t1.1		425472,424827,424383,423881,422275	425662,425249,424587,423991,423576	
chr16	422275	425662	423347	425497	-	Cre16.g693200.t2.1	Cre16.g693200.t2.1		425472,424827,424383,423881,422275	425662,425249,424587,423991,423573	
chr16	425966	432002	426881	431913	-	Cre16.g693202.t1.1	Cre16.g693202.t1.1		431658,431433,430937,430436,430169,429880,429394,428846,428490,428015,427678,427222,425966	432002,431558,431112,430556,430252,429982,429490,428980,428619,428176,427812,427394,427050	
chr16	432057	447892	432472	447847	-	Cre16.g693203.t1.1	Cre16.g693203.t1.1		447778,447444,447081,446790,446459,446032,445713,445216,444924,444373,443984,443586,443239,442812,442387,442055,441656,439549,439151,438774,437316,436914,436385,435901,435576,435019,434307,433659,433275,432919,432057	447892,447499,447198,446922,446586,446293,445858,445402,445021,444479,444093,443815,443387,442956,442507,442204,441744,439673,439239,438856,438546,437026,436694,436130,435663,435170,434495,434003,433381,433051,432586	May contain additional coding sequence in intronic N-island PMID: 27175017
chr16	482093	494534	482127	493481	+	FAP348	Cre16.g693204.t1.1		482093,482674,483767,484230,484916,485425,485740,486048,486630,487094,487762,487931,488233,489381,489769,490187,490658,491712,492088,492630,493457	482328,482778,483977,484441,485035,485459,485871,486198,486707,487153,487773,488014,489136,489502,489824,490430,490828,491780,492243,492797,494534	
chr16	418228	421362	418672	420672	-	Cre16.g693250.t1.2	Cre16.g693250.t1.2		419667,419233,418228	421362,419349,419107	
chr16	413327	418132	414088	417992	-	Cre16.g693300.t1.1	Cre16.g693300.t1.1		417901,417465,417138,416804,416289,415707,415092,414641,413327	418132,417563,417232,416914,416540,416061,415343,414851,414326	
chr16	407337	410242	408543	410059	-	Cre16.g693400.t1.1	Cre16.g693400.t1.1		409995,409389,409037,407337	410242,409784,409229,408766	
chr16	401673	407211	401876	406584	+	FAP40	Cre16.g693450.t1.1		401673,402536,402939,403297,403747,404135,404508,405155,405639,405985,406286,406521	401940,402606,403049,403506,403851,404348,405001,405287,405804,406054,406348,407211	
chr16	396333	401347	397214	400362	+	FAP40	Cre16.g693500.t1.1		396333,397200,397640,398391,398977,399382,399815	397032,397287,397730,398712,399165,399425,401347	Putative extracellular matrix protein (cell wall protein); similar to Volvox ISG [PMID: 1600938]) and Chlamydomonas VSP-3 [PMID: 8000007]; ISG Genbank entry X65165; VSP-3 Genbank entry AY795084. Also known as flagella associated protein FAP40 [PMID: 15998802]
chr16	387523	392944	388094	391378	+	FAP137	Cre16.g693600.t1.2		387523,388636,388970,389251,389816,390268,390874	388149,388726,389045,389388,389932,390444,392944	Putative extracellular matrix protein (cell wall protein); similar to Volvox ISG [PMID: 16938]) and Chlamydomonas VSP-3 [PMID: 87], two glycoproteins with a hydroxyproline-rich (HR) domain; ISG Genbank entry X65165; VSP-3 Genbank entry AY79584; found in flagellar proteome
chr16	387643	392944	388094	391378	+	FAP137	Cre16.g693600.t2.1		387643,388636,388970,389251,389816,390268,390874	388149,388726,389045,389388,389932,390444,392944	Putative extracellular matrix protein (cell wall protein); similar to Volvox ISG [PMID: 16938]) and Chlamydomonas VSP-3 [PMID: 87], two glycoproteins with a hydroxyproline-rich (HR) domain; ISG Genbank entry X65165; VSP-3 Genbank entry AY79584; found in flagellar proteome
chr16	393606	395969	393796	395475	+	ISG2	Cre16.g693601.t1.1		393606,394025,394527	393860,394194,395969	putative extracellular matrix protein (cell wall protein); similar to Volvox ISG [PMID: 1600938]) and Chlamydomonas VSP-3 [PMID: 8000007], two glycoproteins with a hydroxyproline-rich (HR) domain; ISG Genbank entry X65165; VSP-3 Genbank entry AY795084
chr16	378553	386814	378783	385710	+	Cre16.g693650.t1.1	Cre16.g693650.t1.1		378553,379028,379392,381929,382302,383730,384736,385380	378786,379177,381644,381964,383459,384281,385035,386814	
chr16	376164	378452	377022	378295	-	UBC9	Cre16.g693700.t1.2		378262,377950,377710,377485,376164	378452,378018,377823,377571,377166	similar to many plant ubiquitin conjugating enzymes
chr16	369623	376154	370004	374884	+	Cre16.g693750.t1.1	Cre16.g693750.t1.1		369623,370482,370784,371056,371726,372118,372463,372720,373174,373710,374278,374725	370195,370578,370849,371316,371835,372181,372522,372881,373485,373798,374374,376154	
chr16	365967	369452	366346	369325	-	Cre16.g693800.t1.1	Cre16.g693800.t1.1		369163,368676,368028,367607,367236,365967	369452,368944,368426,367727,367451,367033	
chr16	360687	365362	362099	365120	-	PWR12	Cre16.g693819.t1.2		365078,364773,364297,364039,363799,360687	365362,364913,364436,364151,363875,363614	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr16	357698	359316	358519	358754	-	Cre16.g693850.t1.1	Cre16.g693850.t1.1		357698	359316	
chr16	350498	356682	353160	356344	-	PWR13	Cre16.g693900.t1.1		356311,356033,355635,350498	356682,356158,355783,355417	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr16	338516	349191	340224	349067	-	GOX20	Cre16.g693950.t1.1		348946,348331,347786,347477,346772,346506,345985,345631,345253,344824,344494,343703,343325,342708,342246,341830,341343,340806,338516	349191,348602,348039,347573,347193,346578,346113,345686,345289,344992,344590,343799,343443,342801,342406,341884,341533,340950,340419	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes)
chr16	334767	338111	335645	337917	-	Cre16.g694000.t1.2	Cre16.g694000.t1.2		337653,336816,334767	338111,337498,336597	
chr16	277646	284021	278151	283988	-	MMP15	Cre16.g694200.t1.1		283900,283756,283119,282782,282158,281768,281054,280790,280528,280164,279718,279144,278549,277646	284021,283803,283516,282863,282427,281946,281501,280848,280580,280260,279826,279390,278919,278201	Conserved expressed protein; possible peptidase motif?
chr16	284076	293171	284311	292981	-	Cre16.g694201.t1.1	Cre16.g694201.t1.1		292951,292746,292175,291508,290895,290412,290017,287934,287540,286897,285300,284819,284076	293171,292850,292255,291648,291042,290575,290162,288166,287644,287190,285769,284875,284626	
chr16	293792	298079	294216	297335	+	Cre16.g694202.t1.1	Cre16.g694202.t1.1		293792,294797,295410,295839,296315,296933,297191	294271,294899,295551,295911,296433,297022,298079	
chr16	298753	304011	301388	303481	-	PWR14	Cre16.g694203.t1.1		303442,303240,302909,298753	304011,303353,303066,302685	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr16	304106	310631	304541	310524	-	Cre16.g694204.t1.1	Cre16.g694204.t1.1		309861,309207,307762,307047,305765,305572,305257,304867,304106	310631,309308,307853,307167,305860,305664,305301,304992,304691	
chr16	311076	312321	311745	312235	-	Cre16.g694205.t1.1	Cre16.g694205.t1.1		311076	312321	
chr16	312492	316017	312849	315386	+	Cre16.g694206.t1.1	Cre16.g694206.t1.1		312492,313132,314470	312984,314258,316017	
chr16	316417	320631	316552	320103	-	Cre16.g694207.t1.1	Cre16.g694207.t1.1		318147,317656,317001,316417	320631,317778,317203,316793	
chr16	320732	334733	321271	334337	+	Cre16.g694208.t1.1	Cre16.g694208.t1.1		320732,321099,321705,322710,323198,323594,324422,324966,325532,326208,326868,327443,327804,328199,329100,329506,331539,332197,333105,333473	320844,321316,322252,322815,323350,324197,324618,325331,325603,326528,327188,327552,328011,328810,329230,331186,331990,332869,333302,334733	
chr16	272712	277523	272780	277103	+	Cre16.g694250.t1.2	Cre16.g694250.t1.2		272712,273094,273330,273626,274245,274791,275347,275975,276386,276879	272891,273118,273418,273960,274527,275030,275670,276082,276491,277523	
chr16	268256	272611	268325	271928	-	Cre16.g694300.t1.2	Cre16.g694300.t1.2		271911,271424,271197,270855,270396,269657,269011,268256	272611,271635,271299,270945,270623,269990,269417,268382	
chr16	251466	257841	252203	257535	-	TGD2	Cre16.g694400.t1.2		257452,256157,255474,254662,254169,253904,253602,253102,252651,251466	257841,256334,255563,254757,254264,253941,253668,253194,252778,252321	related to MlaD, permease-like component of the Mla pathway, an ABC transporter involved in lipid transfer from ER to chloroplast
chr16	257962	263703	258210	263211	+	Cre16.g694402.t1.1	Cre16.g694402.t1.1		257962,258205,258564,258872,259323,259921,260449,261095,261729,262154,263079	258099,258288,258623,258967,259524,260006,260533,261219,261803,262222,263703	
chr16	263752	268233	264461	267479	+	Cre16.g694403.t1.1	Cre16.g694403.t1.1		263752,264621,264808,265036,265347,265705,266587,267312	264493,264673,264887,265124,265358,265768,267163,268233	
chr16	245509	250811	246519	250416	-	DNJ36	Cre16.g694450.t1.2		250316,250044,249732,249325,245509	250811,250153,249830,249488,249085	Conserved expressed protein; possible peptidase motif?
chr16	238622	245461	239573	244990	-	DNJ37	Cre16.g694500.t1.1		244881,244344,244079,243587,238622	245461,244450,244174,243777,243264	Conserved expressed protein; possible peptidase motif?
chr16	238622	245461	239066	244990	-	DNJ37	Cre16.g694500.t2.1		244881,244344,244079,243587,239551,238622	245461,244450,244174,243777,243264,239066	Conserved expressed protein; possible peptidase motif?
chr16	230523	238051	232749	237620	-	Cre16.g694550.t1.1	Cre16.g694550.t1.1		237323,237157,236794,236178,235691,235016,234448,234222,234000,233614,233421,230523	238051,237234,236893,236488,235934,235580,234951,234315,234074,233742,233480,233064	
chr16	217452	220873	217483	220462	+	Cre16.g694700.t1.2	Cre16.g694700.t1.2		217452,218977,220129	218713,219963,220873	
chr16	220876	224881	220995	224629	-	Cre16.g694703.t1.1	Cre16.g694703.t1.1		224594,224258,223688,223229,222784,222124,220876	224881,224315,223933,223294,222846,222255,221682	Similar to mitochondrial inner membrane signal peptidase
chr16	225002	230503	225086	229918	+	Cre16.g694704.t1.1	Cre16.g694704.t1.1		225002,225306,226065,226544,227359,227671,229158,229611	225224,225783,226171,227080,227412,228810,229309,230503	
chr16	212296	217398	212444	217137	+	Cre16.g694750.t1.2	Cre16.g694750.t1.2		212296,213262,213689,214207,214560,215018,215340,215703,216161,216599,216977	212665,213364,213881,214265,214765,215102,215411,215774,216227,216707,217398	
chr16	207208	212181	207503	211773	-	Cre16.g694800.t1.1	Cre16.g694800.t1.1		211329,210328,209944,209524,208890,208393,208180,207845,207208	212181,210672,210050,209608,209033,208499,208273,207934,207638	
chr16	203666	207071	203915	207002	-	Cre16.g694809.t1.2	Cre16.g694809.t1.2		206961,206803,206626,205389,205033,204709,204477,204165,203666	207071,206852,206708,205477,205044,204772,204501,204326,204046	
chr16	196636	203571	197509	203273	-	NGS1	Cre16.g694850.t1.2		203245,203109,202866,202421,202175,201731,200997,200593,200179,199586,199226,198419,197902,196636	203571,203158,202998,202584,202219,201815,201116,200709,200261,199723,199285,198551,198041,197608	Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; transfers the acetyl group from N-acetylornithine to glutamate; probably marked by mutation arg10; the precursor self-cleaves at PxM-ATML site conserved in all eukaryotes
chr16	191276	196541	192316	196223	-	Cre16.g694900.t1.1	Cre16.g694900.t1.1		196414,196147,195704,195284,194705,194221,193564,193041,192738,191276	196541,196247,195985,195426,195148,194475,194030,193251,192818,192520	
chr16	187906	190271	188452	189946	-	Cre16.g694942.t1.2	Cre16.g694942.t1.2		189827,189177,188874,187906	190271,189387,188954,188656	
chr16	184553	187491	185225	187326	-	Cre16.g694950.t1.1	Cre16.g694950.t1.1		187130,186773,186061,185840,185633,184553	187491,186981,186528,185871,185755,185430	
chr16	174286	181836	174390	181244	+	HCD1	Cre16.g695050.t1.2		174286,174991,175422,175937,176695,177062,177711,178088,178493,179069,179715,180170,180543,181061	174487,175169,175513,176084,176824,177325,177880,178235,178683,179268,179865,180320,180643,181836	
chr16	165890	174125	167942	174014	-	Cre16.g695100.t1.1	Cre16.g695100.t1.1		173941,173031,172632,172199,171649,171239,170783,170551,169840,169394,169143,168586,165890	174125,173110,172739,172321,171765,171289,170864,170645,170007,169561,169208,168693,168155	
chr16	155536	161817	155743	160636	+	Cre16.g695150.t1.1	Cre16.g695150.t1.1		155536,155952,156229,156506,156783,157069,157346,157623,157900,158177,158454,158732,159009,159286,159563,159841,160118,160395	155802,156041,156318,156595,156881,157158,157435,157712,157989,158266,158543,158821,159098,159375,159652,159930,160207,161817	
chr16	145620	149595	146619	149286	-	Cre16.g695200.t1.1	Cre16.g695200.t1.1		149252,148613,148368,147875,146866,145620	149595,148678,148391,147982,147740,146619	
chr16	152006	152915	152677	152867	-	Cre16.g695202.t1.1	Cre16.g695202.t1.1		152006	152915	
chr16	138150	145545	139780	145307	-	Cre16.g695218.t1.2	Cre16.g695218.t1.2		145100,144767,144285,143651,142263,141812,141543,141307,141062,140663,140268,138150	145545,145009,144588,143941,143512,142057,141599,141390,141100,140764,140372,139903	
chr16	135546	138082	136533	137215	+	Cre16.g695250.t1.1	Cre16.g695250.t1.1		135546,136255	135942,138082	
chr16	126740	133595	127211	133510	-	Cre16.g695300.t1.1	Cre16.g695300.t1.1		133462,133270,133023,132646,131885,131606,131084,130492,129987,129619,128900,128443,128041,127752,126740	133595,133368,133195,132746,132204,131692,131209,130620,130153,129739,129238,128664,128118,127799,127532	
chr16	123100	126685	123802	126597	-	Cre16.g695350.t1.1	Cre16.g695350.t1.1		126506,126224,125801,125225,124677,124326,123100	126685,126415,126036,125540,124906,124415,124117	
chr16	113280	123045	113762	122849	-	Cre16.g695400.t1.1	Cre16.g695400.t1.1		122687,122158,121754,121143,120874,116104,115600,115303,114860,114278,113280	123045,122562,122002,121491,120936,120698,115851,115387,114938,114415,114003	
chr16	107006	113079	107181	112473	+	UAF4	Cre16.g695450.t1.1		107006,107465,107819,108055,108437,108793,109106,109554,110446,110947,111233,112473	107333,107635,107881,108178,108542,108893,109315,110045,110640,111075,112077,113079	
chr16	107006	113079	107181	112473	+	UAF4	Cre16.g695450.t2.1		107006,107465,107819,108055,108437,108793,109106,109554,110446,110947,111233,112473	107333,107635,107881,108178,108542,108893,109315,110045,110547,111075,112077,113079	
chr16	107006	113079	107181	112473	+	UAF4	Cre16.g695450.t3.1		107006,107465,107819,108055,108437,108793,109106,109554,110947,111233,112473	107333,107635,107881,108178,108542,108893,109315,110045,111075,112077,113079	
chr16	100769	106905	101946	106760	-	Cre16.g695500.t1.1	Cre16.g695500.t1.1		106691,106270,105989,105705,105338,104989,104502,104085,103713,103382,103025,102379,100769	106905,106366,106053,105784,105425,105111,104745,104275,103800,103500,103228,102465,102060	
chr16	100769	106905	101946	106760	-	Cre16.g695500.t2.1	Cre16.g695500.t2.1		106691,106270,105989,105705,105338,104989,104502,104085,103713,103382,103025,100769	106905,106366,106053,105784,105425,105111,104745,104275,103800,103500,103228,102060	
chr16	95290	100355	95826	99969	-	Cre16.g695550.t1.1	Cre16.g695550.t1.1		99902,99484,99176,98316,97938,97650,96869,96395,95290	100355,99571,99332,99029,98018,97706,97420,96498,96142	
chr16	91660	95239	92681	94999	-	DNJ10	Cre16.g695600.t1.2		94802,94617,94303,93666,93052,91660	95239,94641,94478,94101,93435,92879	DnaJ-like protein; probably nuclear/cytosolic; similar to Chlamy Q6JX9_CHLRE GlsA-related protein and to Volvox GLSA; contains J-domain (pfam226) at the N-terminus and Myb_DNA-binding-Domain (pfam249) at the C-terminus
chr16	83796	91365	84394	90221	+	Cre16.g695650.t1.1	Cre16.g695650.t1.1		83796,84132,84293,84526,86575,87019,87305,88250,88571,89075	84013,84175,84403,86409,86864,87141,88043,88417,88906,91365	
chr16	80749	82940	80779	82102	+	Cre16.g695700.t1.2	Cre16.g695700.t1.2		80749,81504,81841	80933,81619,82940	
chr16	59831	76785	60569	76583	-	Cre16.g695800.t1.1	Cre16.g695800.t1.1		76529,75745,75490,75266,74608,73715,73323,72980,72500,72225,71915,71524,71262,70974,70402,69841,69262,68927,68410,68018,67728,67567,67117,66665,66365,66027,65836,65302,65101,64741,64366,63850,63351,63032,62468,61168,59831	76785,76362,75615,75325,75104,74418,73511,73110,72802,72318,71997,71766,71355,71074,70496,70161,69628,69111,68680,68136,67758,67605,67279,66784,66474,66129,65863,65368,65160,64800,64520,64243,63656,63148,62869,61428,60860	
chr16	52384	57545	53534	57465	-	Cre16.g695850.t1.2	Cre16.g695850.t1.2		57334,56637,56312,55991,55638,55375,55012,54740,54173,52384	57545,56808,56410,56134,55763,55458,55188,54823,54598,53933	
chr16	57666	59817	57825	59691	+	Cre16.g695851.t1.1	Cre16.g695851.t1.1		57666,58101,58684,58899	57972,58479,58733,59817	
chr16	46570	52364	46923	51414	+	Cre16.g695900.t1.1	Cre16.g695900.t1.1		46570,47036,47229,47554,47979,48256,48686,50870,50981,51352	46929,47068,47315,47664,48025,48358,48808,50876,51094,52364	
chr16	43008	46455	43673	46237	-	MFL1	Cre16.g695950.t1.2		45946,45460,45199,44665,44001,43008	46455,45573,45299,44830,44324,43835	Mitochondrial substrate carrier protein, similar to plant mitoferrins
chr16	32779	41525	33035	41220	-	Cre16.g696000.t1.2	Cre16.g696000.t1.2		41421,41076,40723,40165,39860,39668,39065,38760,38012,37207,36910,35195,34734,34500,34067,32779	41525,41248,40836,40293,39940,39737,39457,38931,38308,37812,37087,36791,35032,34645,34211,33146	
chr16	22270	32605	23112	32266	-	Cre16.g696050.t1.1	Cre16.g696050.t1.1		32403,32116,31468,31199,30201,29841,29489,28264,27934,27550,27353,27004,26737,26503,25831,25075,24781,24499,24340,24156,23878,23543,22270	32605,32275,31947,31312,31021,30003,29672,29159,28122,27738,27393,27202,26894,26574,25953,25691,24908,24580,24383,24219,23944,23628,23318	
chr17	1755	9645	4115	5548	-	Cre17.g692564.t1.1	Cre17.g692564.t1.1		9587,8503,7542,6713,5445,1755	9645,9301,8266,7383,6287,4222	
chr17	10780	11875	11239	11690	-	Cre17.g692676.t1.1	Cre17.g692676.t1.1		11660,10780	11875,11470	
chr17	12776	16127	12962	13925	+	Cre17.g696200.t1.2	Cre17.g696200.t1.2		12776,13271,13609,13823	13111,13339,13753,16127	
chr17	17594	26315	18375	26122	-	Cre17.g696250.t1.1	Cre17.g696250.t1.1		26018,25868,25653,25391,23409,22989,22605,21970,21518,21323,20905,20498,20225,19955,19563,18709,17594	26315,25950,25784,25467,25178,23255,22856,22420,21822,21405,21136,20782,20373,20074,19766,19390,18504	
chr17	17594	26315	18375	26122	-	Cre17.g696250.t2.1	Cre17.g696250.t2.1		26018,25868,25653,25391,23409,22989,22605,21970,21518,21323,20905,20498,20225,19955,19563,18709,17594	26315,25950,25784,25467,25175,23255,22856,22420,21822,21405,21136,20782,20373,20074,19766,19390,18504	
chr17	27349	36175	28700	35956	-	Cre17.g696300.t1.1	Cre17.g696300.t1.1		35089,34323,34068,33784,33551,32870,32087,31562,31252,30651,30409,30093,29712,27349	36175,34816,34190,33867,33599,32908,32119,31881,31408,30866,30471,30239,29887,29577	
chr17	36711	39805	37352	39748	-	Cre17.g696350.t1.2	Cre17.g696350.t1.2		39565,39358,38847,38690,38514,38086,37850,37518,36711	39805,39411,38914,38753,38567,38343,37935,37716,37433	
chr17	39910	42053	39987	41257	+	CLPS1	Cre17.g696400.t1.1		39910,40150,40308,40698,40928,41137	40053,40204,40413,40751,41015,42053	Probably chloroplastic; homologous to E. coli ClpS [PMID: 11931773] and to At1g68660 [PMID: 12576022], but not to the plant-specific ClpT subunits of the ClpP complex (initially called ClpS; PMID: 14593120)
chr17	42330	49245	42611	48470	-	Cre17.g696450.t1.1	Cre17.g696450.t1.1		48627,47888,47186,46251,45327,45069,44608,44249,43943,42330	49245,48509,47694,47028,45479,45197,44860,44502,44068,43835	
chr17	49581	52364	50161	52128	-	PHC19	Cre17.g696500.t1.1		51994,51507,51158,50459,49581	52364,51790,51368,50809,50333	pherophorin-C19 (PHC19) [PMID: 16367971]; belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain.
chr17	52810	56615	54449	56416	-	Cre17.g696550.t1.2	Cre17.g696550.t1.2		56065,55265,54833,52810	56615,55807,54970,54656	
chr17	56736	62107	57259	61051	+	FMR1	Cre17.g696600.t1.1		56736,57680,57913,58164,58474,58952,59298,59740,60126,60543,60912	57517,57751,58001,58251,58755,59068,59348,59958,60419,60697,62107	succinate dehydrogenase
chr17	62156	63257	62212	62997	+	Cre17.g696626.t1.1	Cre17.g696626.t1.1		62156,62970	62491,63257	
chr17	63356	66787	63758	66283	+	Cre17.g696650.t1.1	Cre17.g696650.t1.1		63356,63746,63918,64116,64414	63658,63823,64008,64268,66787	
chr17	66834	69000	66997	68589	+	PHC22	Cre17.g696700.t1.2		66834,67294,68139	67062,67954,69000	pherophorin-C22 (PHC22) [PMID: 16367971]; belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain.
chr17	72393	82855	73310	82154	-	Cre17.g696750.t1.1	Cre17.g696750.t1.1		82559,81224,76378,72393	82855,82280,81071,76179	
chr17	85811	88805	86697	87905	-	Cre17.g696800.t1.1	Cre17.g696800.t1.1		88054,87557,87274,85811	88805,87941,87375,87018	
chr17	85811	88825	86697	87905	-	Cre17.g696800.t2.1	Cre17.g696800.t2.1		88644,87557,87274,85811	88825,87941,87375,87018	
chr17	89457	92136	90175	92061	-	Cre17.g696850.t1.2	Cre17.g696850.t1.2		91855,91542,91369,91027,90512,89457	92136,91620,91428,91101,90607,90328	
chr17	93230	103875	93499	103374	-	Cre17.g696900.t1.1	Cre17.g696900.t1.1		103280,103088,102730,102501,102147,101733,101535,101198,100879,100667,100331,100149,99616,99381,98990,98163,96674,96411,95850,95625,94853,94631,94407,94267,93853,93230	103875,103135,102890,102559,102288,101935,101658,101287,100979,100778,100536,100206,99917,99490,99265,98824,98000,96440,96130,95661,95361,94673,94489,94291,94136,93679	Serine/Threonine Protein Kinase Homolog 20, putative
chr17	104087	115105	104707	114326	-	Cre17.g696950.t1.1	Cre17.g696950.t1.1		114247,114044,113517,113314,112976,112561,112330,111896,111566,111237,110916,110451,110216,109825,108998,107647,107488,106954,106811,106191,105968,105614,105475,105061,104087	115105,114091,113677,113372,113117,112763,112411,112021,111666,111351,111121,110810,110325,110100,109659,108835,107517,107231,106847,106693,106010,105696,105499,105344,104887	
chr17	115690	122055	117082	121818	-	Cre17.g697000.t1.1	Cre17.g697000.t1.1		121798,121229,120909,119826,119434,119154,118867,118448,118072,117663,117265,115690	122055,121582,121068,120724,119635,119230,118930,118593,118180,117738,117472,117128	
chr17	122156	125732	122319	125245	+	Cre17.g697050.t1.2	Cre17.g697050.t1.2		122156,122681,123091,123551,123965,124362,124829,125164	122456,122828,123162,123724,124109,124461,124877,125732	
chr17	125750	145945	126683	145683	-	Cre17.g697150.t1.2	Cre17.g697150.t1.2		144390,144059,143522,143207,142703,142446,141553,140338,139022,138710,138182,137687,137382,136561,135716,135129,134531,132350,131067,130682,129259,128860,128284,127532,126971,125750	145945,144174,143592,143280,142951,142565,142030,141350,140208,138809,138442,137992,137552,137100,136069,135479,134927,134303,132186,130851,130560,128999,128555,128077,127123,126683	
chr17	146050	149515	146658	149200	-	Cre17.g697200.t1.1	Cre17.g697200.t1.1		148847,148624,148205,147830,147566,147236,146973,146050	149515,148708,148246,147925,147622,147365,147143,146801	
chr17	150296	152995	150623	152615	+	Cre17.g697250.t1.1	Cre17.g697250.t1.1		150296,152451	150720,152995	
chr17	153178	166245	153939	165964	-	CEP16	Cre17.g697300.t1.1		165872,165025,164824,164480,164032,163818,163497,162934,162653,162211,161940,161570,161074,160753,160575,160247,159707,159525,159212,158789,158378,158045,157551,157289,156993,156660,156303,156110,155630,155377,155106,154851,154389,153178	166245,165103,164865,164696,164351,163926,163654,163312,162842,162518,162008,161741,161348,160866,160637,160424,160059,159602,159389,159126,158658,158253,157920,157457,157034,156805,156420,156158,155876,155456,155256,154973,154734,154253	Cysteine-type endopeptidase, papain type
chr17	166312	173355	167391	173196	-	Cre17.g697334.t1.2	Cre17.g697334.t1.2		172927,172380,171994,171665,171244,170857,170635,170457,170112,169846,169445,168948,168694,168272,167796,166312	173355,172526,172054,171810,171391,170895,170712,170479,170254,169943,169579,169205,168781,168478,168004,167547	
chr17	173456	176557	173545	176081	+	Cre17.g697350.t1.2	Cre17.g697350.t1.2		173456,174006,174471,174984,175262,175928	173811,174204,174579,175024,175405,176557	
chr17	177024	181485	179375	181275	-	Cre17.g697406.t1.2	Cre17.g697406.t1.2		181241,180993,177024	181485,181100,180796	
chr17	181625	187314	182102	187224	-	Cre17.g697450.t1.2	Cre17.g697450.t1.2		187147,186805,186520,186071,185715,185358,184978,184597,184098,182935,182537,181625	187314,186952,186572,186191,185789,185449,185101,184709,184287,183081,182753,182338	
chr17	187460	193547	187581	192748	+	Cre17.g697500.t1.1	Cre17.g697500.t1.1		187460,187755,188010,188614,188945,189235,189475,189859,190450,190684,190915,191121,191623,192284,192610	187665,187793,188456,188791,189058,189330,189701,190256,190520,190768,190984,191410,191916,192443,193547	
chr17	193954	197778	194197	197257	+	Cre17.g697550.t1.1	Cre17.g697550.t1.1		193954,194445,194835,195025,195488,195749,196111,196696	194307,194597,194910,195306,195590,195959,196483,197778	
chr17	201424	205335	201729	205254	+	Cre17.g697600.t1.1	Cre17.g697600.t1.1		201424,203787,204349,204867	203511,204079,204685,205335	
chr17	205484	209295	205870	208562	+	Cre17.g697624.t1.2	Cre17.g697624.t1.2		205484,205803,206089,206502,207546,208025,208415	205688,205881,206200,206579,207677,208126,209295	
chr17	210141	222252	210207	221805	+	Cre17.g697650.t1.1	Cre17.g697650.t1.1		210141,210390,210918,211307,211769,212183,212522,213096,213646,214029,214569,214845,215273,215783,216326,216754,217189,217759,218179,218520,219006,220350,220812,221190,221670	210284,210456,210987,211396,211849,212283,212583,213228,213789,214154,214604,214932,215355,215899,216446,216831,217281,217859,218249,218636,219202,220442,220915,221324,222252	
chr17	222414	222935	222504	222868	+	Cre17.g697701.t1.1	Cre17.g697701.t1.1		222414	222935	
chr17	223768	226213	224586	226155	-	Cre17.g697750.t1.2	Cre17.g697750.t1.2		226155,225796,225445,225152,223768	226213,226011,225459,225174,224887	
chr17	226324	230945	226383	229584	+	Cre17.g697800.t1.2	Cre17.g697800.t1.2		226324,226879,227429,227723,228331,228590,229044	226708,227147,227587,227851,228453,228754,230945	
chr17	232984	236393	233053	235488	+	Cre17.g697850.t1.2	Cre17.g697850.t1.2		232984,233392,233729,234000,234293	233221,233632,233801,234131,236393	
chr17	236628	241793	236921	241726	-	Cre17.g697900.t1.1	Cre17.g697900.t1.1		241212,240911,240263,239891,238288,236628	241793,240983,240518,240039,239657,237982	
chr17	241857	244853	242002	244709	-	Cre17.g697934.t1.2	Cre17.g697934.t1.2		244574,244118,243124,242287,242096,241857	244853,244201,243642,242912,242184,242002	
chr17	241857	244853	242002	244709	-	Cre17.g697934.t2.1	Cre17.g697934.t2.1		244574,244118,243124,242096,241857	244853,244201,243642,242912,242002	
chr17	245024	252395	245399	250828	+	AAA3	Cre17.g697950.t1.1		245024,245375,245872,246689,247031,247457,247876,248324,249168,249481,249982,250411	245269,245436,246320,246850,247123,247597,248070,248864,249308,249728,250104,252395	ADP,ATP carrier protein; belongs to a plant-specific transporter family
chr17	254682	259533	255396	259233	-	ATP2	Cre17.g698000.t1.2		259107,258804,258640,258468,258183,257988,257735,257044,256582,256195,255915,255609,254682	259533,259007,258715,258556,258300,258064,257837,257261,256812,256377,256034,255743,255441	ATP synthase F1F0 beta chain, mitochondrial precursor [PMID: 1386535; GI:584796]
chr17	262568	267013	264186	266781	-	Cre17.g698100.t1.2	Cre17.g698100.t1.2		266660,266484,266004,265382,265095,264596,262568	267013,266543,266119,265395,265146,264692,264362	
chr17	269584	276365	269887	273898	+	CYCR4	Cre17.g698150.t1.1		269584,270497,270958,272282,273736	270115,270594,271995,273329,276365	
chr17	276414	279745	276618	278929	+	Cre17.g698200.t1.1	Cre17.g698200.t1.1		276414,276716,277000,277486,277788,278269,278762	276642,276787,277098,277556,277992,278401,279745	
chr17	280069	290933	282010	290683	-	Cre17.g698233.t1.1	Cre17.g698233.t1.1		290680,289538,288368,287867,287221,285963,284988,284235,283818,283333,280069	290933,289669,288416,288009,287360,286171,285659,284551,283913,283439,282929	
chr17	291538	294453	291991	294284	-	Cre17.g698266.t1.1	Cre17.g698266.t1.1		294266,293722,293290,292789,292368,291538	294453,293815,293365,292877,292429,292162	
chr17	298318	303153	298853	302722	-	Cre17.g698299.t1.1	Cre17.g698299.t1.1		302340,302148,301739,301386,300898,300417,300151,298318	303153,302234,302016,301517,301239,300730,300279,299982	
chr17	304058	306863	305393	306836	-	Cre17.g698332.t1.1	Cre17.g698332.t1.1		306818,306351,305816,304058	306863,306691,306034,305562	
chr17	329512	335523	329543	335295	-	FAP172	Cre17.g698365.t1.1		335109,334881,334532,333912,333438,333029,332773,332172,331762,331218,330728,330120,329627,329512	335523,335009,334606,333989,333526,333149,332849,332472,331971,331390,330961,330345,329688,329562	Flagellar Associated Protein, found in the flagellar proteome; possible DRC component; part of 96-nm molecular ruler
chr17	335634	338694	335669	337600	+	LCI31	Cre17.g698400.t1.2		335634,335919,336503,336684,337035,337470	335777,336005,336586,336744,337272,338694	Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr17	339325	344224	339376	343460	+	Cre17.g698450.t1.2	Cre17.g698450.t1.2		339325,339831,340433,340801,341246,341674,342088,342499,342903,343316	339544,339902,340492,340896,341382,341803,342228,342577,342985,344224	
chr17	344284	345195	344465	344829	+	Cre17.g698500.t1.2	Cre17.g698500.t1.2		344284	345195	
chr17	345437	346693	346133	346305	-	Cre17.g698516.t1.1	Cre17.g698516.t1.1		345437	346693	
chr17	346794	349185	346856	347037	+	Cre17.g698532.t1.1	Cre17.g698532.t1.1		346794	349185	
chr17	349188	359073	350259	358497	-	Cre17.g698550.t1.1	Cre17.g698550.t1.1		358491,358366,357690,357118,356796,356342,356091,355774,355451,349188	359073,358410,357803,357206,356821,356463,356173,355836,355560,355220	
chr17	360302	364097	360931	363994	-	LIP3	Cre17.g698600.t1.1		363594,363075,362715,361954,361258,360302	364097,363286,362864,362358,361684,361086	related to triacylglycerol lipase precursor (Gastric lipase) (GL)(Pregastric esterase) (PGE)and lipase 3 precursor (LIP3)
chr17	364152	373627	365381	373452	-	GTP1	Cre17.g698650.t1.1		373414,373244,372830,372467,371752,371103,370717,370320,369850,369302,368695,368307,367816,367459,366888,366370,365736,364152	373627,373308,372937,372561,371823,371286,370778,370466,370000,369405,368934,368458,367879,367580,366970,366592,365889,365543	catalyzes the first step in the degradation of glutathione; located on the external surface of the plasma membrane in other organisms
chr17	373728	377499	373848	376870	+	Cre17.g698683.t1.2	Cre17.g698683.t1.2		373728,375841,376397,376819	375488,375909,376556,377499	
chr17	377978	389499	378208	387897	+	Cre17.g698700.t1.1	Cre17.g698700.t1.1		377978,378688,379495,380425,380794,381405,382440,383378,385944,386508,386861,387243,387831	378239,378824,379641,380514,380877,382078,383169,385471,386117,386549,386994,387345,389499	
chr17	377978	389129	378208	387897	+	Cre17.g698700.t2.1	Cre17.g698700.t2.1		377978,378688,379495,380425,380794,381405,382440,383378,385944,386508,386861,387243,387831	378239,378824,379641,380514,380877,382078,383169,385471,386117,386549,386994,387345,389129	
chr17	391648	397110	391780	396874	+	OPR104	Cre17.g698750.t1.2		391648,392443,393089,393465,393902,394795,395545,396385	392269,392763,393216,393651,394354,395236,395732,397110	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; involved in psaA transsplicing as part of a large protein complex
chr17	397112	401407	397873	401036	-	Cre17.g698800.t1.2	Cre17.g698800.t1.2		400890,400461,400040,399805,399483,399064,398727,397112	401407,400602,400075,399855,399590,399317,398820,398455	
chr17	401558	409289	401781	408148	+	ISA2	Cre17.g698850.t1.1		401558,402106,402934,403544,404117,404450,404906,405229,405530,406040,406439,406976,407530	401805,402515,403151,403920,404171,404631,404999,405288,405836,406175,406597,407206,409289	Putative isoamylase-type starch debranching enzyme, isoform 2
chr17	411668	414549	413116	413766	+	Cre17.g698900.t1.1	Cre17.g698900.t1.1		411668,413030,413704	412213,413627,414549	
chr17	414678	437196	415007	435461	+	Cre17.g698903.t1.2	Cre17.g698903.t1.2		414678,415537,416342,416643,416836,417175,417648,418088,418492,419142,419947,420435,420755,421054,421330,421684,422132,422630,422911,424240,425036,426787,429076,429468,429947,430392,431431,431852,432380,432797,433147,433579,434036,434524,435016	415081,415643,416441,416694,416951,417267,417703,418245,418710,419339,420033,420560,420891,421183,421451,421889,422361,422734,424029,424808,426620,428672,429181,429640,430135,431118,431670,432087,432477,432930,433284,433677,434233,434726,437196	
chr17	437675	441587	438336	441449	-	Cre17.g698950.t1.2	Cre17.g698950.t1.2		440953,440463,439342,439028,437675	441587,440561,439407,439127,438778	
chr17	441728	453059	441826	452269	+	PAT1	Cre17.g699000.t1.2		441728,442344,442960,443461,443872,444491,444926,445312,445826,446297,446737,447144,447419,448012,448409,448782,449490,450028,450429,450728,451194,451761,452125	441909,442478,443100,443533,443936,444566,445009,445374,445938,446375,446801,447284,447647,448113,448543,448838,449583,450134,450491,450886,451371,451825,453059	Putative phosphate acetyltransferase (EC 2.3.1.8); phosphotransacetylase; similarity to prokaryotic phosphate acetyltransferase (e.g., Desulfovibrio GenBank AAS975)
chr17	441758	453059	441847	452269	+	PAT1	Cre17.g699000.t2.1		441758,442344,442960,443461,443872,444491,444926,445312,445826,446297,446737,447144,447419,448012,448409,448782,449490,450028,450429,450728,451194,451761,452125	441909,442478,443100,443533,443936,444566,445009,445374,445938,446375,446801,447284,447647,448113,448543,448838,449583,450134,450491,450886,451371,451825,453059	Putative phosphate acetyltransferase (EC 2.3.1.8); phosphotransacetylase; similarity to prokaryotic phosphate acetyltransferase (e.g., Desulfovibrio GenBank AAS975)
chr17	453259	461977	454466	461744	-	Cre17.g699050.t1.1	Cre17.g699050.t1.1		461714,461486,461246,460621,460224,459963,459524,459072,458786,458032,457686,457098,456533,455361,454959,453259	461977,461515,461335,460872,460425,460003,459658,459212,458860,458628,457745,457481,456856,456293,455157,454780	
chr17	453259	461977	454466	461744	-	Cre17.g699050.t2.1	Cre17.g699050.t2.1		461714,461486,461246,460621,460224,459963,459524,459072,458786,458032,457686,457098,456533,455361,454971,453259	461977,461515,461335,460872,460425,460003,459658,459212,458860,458628,457745,457481,456856,456293,455157,454780	
chr17	453259	461977	454466	461744	-	Cre17.g699050.t3.1	Cre17.g699050.t3.1		461714,461486,461246,460621,460224,459963,459524,459072,458786,458032,457686,457098,456635,455361,454971,453259	461977,461515,461335,460872,460425,460003,459658,459212,458860,458628,457745,457481,456856,456293,455157,454780	
chr17	462488	470185	462975	468426	+	TGL20	Cre17.g699100.t1.1		462488,462920,463682,464429,464822,465136,465404,465829,466201,466627,467046	462799,463259,463778,464612,464961,465211,465581,465907,466401,466827,470185	
chr17	470283	476707	470887	476620	-	Cre17.g699150.t1.2	Cre17.g699150.t1.2		476498,476394,476165,475669,475196,474591,472830,472109,471416,470283	476707,476429,476209,475885,475333,474771,474274,472477,471747,471050	
chr17	476975	479327	477339	479252	-	Cre17.g699200.t1.2	Cre17.g699200.t1.2		479060,478505,478160,477713,476975	479327,478729,478204,477846,477505	
chr17	479520	488667	481408	488136	-	Cre17.g699250.t1.1	Cre17.g699250.t1.1		488048,487644,487280,484244,479520	488667,487934,487494,487070,484065	
chr17	489558	496997	490176	496790	-	Cre17.g699300.t1.1	Cre17.g699300.t1.1		495641,495058,493697,493348,491793,491547,491069,490510,489558	496997,495375,494884,493476,493178,491663,491344,490844,490354	
chr17	497098	501654	497139	501191	+	Cre17.g699350.t1.1	Cre17.g699350.t1.1		497098,497639,498279,498497,498982,499242,499557,499919,500318,500623,501060	497227,497919,498306,498688,499040,499313,499638,499965,500380,500743,501654	
chr17	501738	505369	501882	504685	+	Cre17.g699400.t1.2	Cre17.g699400.t1.2		501738,502087,502496,502950,503718,504094	501890,502323,502580,503459,503804,505369	
chr17	505372	509577	505921	509289	-	Cre17.g699450.t1.2	Cre17.g699450.t1.2		507740,506692,505372	509577,507455,506425	
chr17	510158	515077	510651	514849	-	TTLL9	Cre17.g699500.t1.2		514811,514609,514196,513828,513304,512947,512247,511902,511530,511042,510158	515077,514728,514334,513998,513392,513045,512422,512059,511598,511172,510763	glutamic acid ligase
chr17	518377	538597	519173	538387	-	Cre17.g699550.t1.1	Cre17.g699550.t1.1		538327,538055,537669,537371,536994,536543,535875,535481,535191,534906,534678,534428,533925,533560,533191,532808,532575,532326,531974,530999,530441,530096,529633,529263,528823,528463,527856,527414,527014,526056,525271,524459,520458,520071,519645,518377	538597,538109,537826,537512,537205,536767,536291,535687,535293,534970,534820,534527,534051,533760,533372,532954,532642,532447,532095,531136,530677,530221,529941,529463,528918,528627,528299,527503,527182,526695,525349,525019,524282,520256,519767,519404	
chr17	539917	543237	540068	542463	+	SBP2	Cre17.g699600.t1.2		539917,540242,540755,540962,541517,542039,542325	540110,540286,540823,541316,541811,542177,543237	shows similarity to both fructose 1,6-bisphosphatase (FBPase) and sedoheptulose 1,7-bisphosphatase (SBPase); based on probable cytosolic localization, fructose appears as a more likely substrate, and the enzyme would participate in cytosolic glyconeogenesis
chr17	543287	546378	544289	545686	+	Cre17.g699650.t1.1	Cre17.g699650.t1.1		543287,543620,543779,543928,544082,545040,545348,545575	543553,543666,543834,543980,544895,545132,545392,546378	ts-lethal mutant was isolated (PMID 29743196)
chr17	546537	557993	547244	556446	+	Cre17.g699700.t1.1	Cre17.g699700.t1.1		546537,547184,549269,549611,550587,551031	546854,549070,549450,550002,550889,557993	
chr17	558187	563756	559063	562613	+	CTL2	Cre17.g699750.t1.1		558187,558905,560089,560432,560803,562591	558451,559855,560229,560551,562349,563756	Contains a pherophorin domain and a C-terminal C-type lectin domain responsible for carbohydrate binding activity (PMID: 16336259)
chr17	563771	567566	564131	566273	-	Cre17.g699776.t1.1	Cre17.g699776.t1.1		567405,565916,565207,563771	567566,566503,565760,564591	
chr17	567710	570561	567881	569904	+	PHC67	Cre17.g699800.t1.1		567710,568188,568328,568590,568792,569086,569385,569594	567986,568193,568398,568683,568894,569223,569436,570561	
chr17	570627	575166	571205	575048	-	GDP3	Cre17.g699850.t1.2		574996,574515,573936,573597,573225,572771,572326,571949,571546,570627	575166,574697,574120,573698,573326,572896,572409,572092,571669,571273	
chr17	575244	579876	575972	579774	-	Cre17.g699900.t1.2	Cre17.g699900.t1.2		579687,579318,578928,578623,578305,578041,577735,577298,577050,576615,576305,575244	579876,579394,579015,578690,578433,578122,577807,577436,577141,576749,576360,576050	Probable aldo/keto reductase (related to aryl-alcohol dehydrogenases)
chr17	580017	583668	580065	582863	+	Cre17.g699926.t1.1	Cre17.g699926.t1.1		580017,582767	582180,583668	
chr17	584317	590068	585331	589653	+	Cre17.g699950.t1.1	Cre17.g699950.t1.1		584317,585239,586387,586829,587507,588246	584816,586273,586550,587221,588080,590068	
chr17	590117	592748	590237	591993	+	Cre17.g699975.t1.1	Cre17.g699975.t1.1		590117,591123,591933	590849,591620,592748	
chr17	592797	595135	592895	593944	+	Cre17.g700000.t1.2	Cre17.g700000.t1.2		592797,593521	593060,595135	
chr17	595161	602716	595715	602389	-	Cre17.g700050.t1.1	Cre17.g700050.t1.1		602269,601882,600829,597673,597460,597148,596878,596454,596109,595161	602716,601973,601379,600413,597536,597231,596929,596576,596159,595865	
chr17	603197	605268	603356	604771	+	Cre17.g700100.t1.1	Cre17.g700100.t1.1		603197,603481,603799,604007,604352,604717	603384,603563,603871,604050,604420,605268	
chr17	605270	611786	606542	611610	-	WNK1	Cre17.g700133.t1.1		610959,610592,610089,609597,608873,608228,607947,607514,605270	611786,610705,610201,609728,608957,608350,607971,607689,607325	WNK (With No Lysine) protein kinase homolog
chr17	612184	621656	613278	621439	-	Cre17.g700166.t1.1	Cre17.g700166.t1.1		621349,620587,620238,620032,619856,619663,619228,618851,618124,617517,615987,612184	621656,620673,620335,620070,619897,619730,619375,618916,618214,617820,617248,615777	
chr17	621767	627874	622048	627307	+	Cre17.g700200.t1.2	Cre17.g700200.t1.2		621767,623230,623731,624366,626414,626781	622182,623376,623824,624950,626547,627874	
chr17	627927	631388	628073	631236	+	Cre17.g700250.t1.2	Cre17.g700250.t1.2		627927	631388	
chr17	631401	636796	631892	636304	-	CGL22	Cre17.g700300.t1.1		636600,636055,635772,635337,635006,634608,633989,633539,633056,632808,632540,632229,631401	636796,636436,635907,635485,635180,634737,634387,633675,633244,632918,632643,632328,632086	Conserved in the Green Lineage
chr17	638431	642164	638764	641416	-	Cre17.g700425.t1.2	Cre17.g700425.t1.2		640752,639683,638831,638431	642164,640361,639584,638764	
chr17	642211	644608	643163	644530	-	Cre17.g700450.t1.2	Cre17.g700450.t1.2		644369,643967,643543,642211	644608,644078,643760,643344	Of unknown function, possibly involved in membrane transport
chr17	644878	656026	645660	655685	-	Cre17.g700500.t1.1	Cre17.g700500.t1.1		655577,655429,655171,655001,654675,653444,649949,646766,646358,644878	656026,655489,655281,655048,654730,654426,653261,649720,646550,646181	
chr17	656357	659468	656384	658822	+	Cre17.g700550.t1.1	Cre17.g700550.t1.1		656357,656725,656974,657437	656489,656816,657206,659468	
chr17	659517	663927	660937	663392	+	Cre17.g700600.t1.1	Cre17.g700600.t1.1		659517,660758,661302,661549,662007	659785,661063,661393,661781,663927	
chr17	664677	667718	665005	666280	+	Cre17.g700650.t1.2	Cre17.g700650.t1.2		664677,665348,665676,666099	665115,665459,665893,667718	Of unknown function, possibly involved in membrane transport
chr17	667767	691581	667928	690769	+	Cre17.g700700.t1.1	Cre17.g700700.t1.1		667767,669137,669769,670311,670620,671053,671471,671791,672347,672830,673524,673867,674108,674517,674712,675089,675777,676193,676614,676841,677248,677626,677864,678399,679330,679775,680020,680360,680724,681154,681563,681927,682634,682890,683778,684091,684615,685022,686100,687005,689218,689714,690274	668022,669306,669927,670427,670814,671150,671559,671918,672475,673154,673711,673913,674346,674549,674789,675459,675922,676368,676688,677001,677391,677702,678122,679103,679473,679886,680142,680428,680849,681315,681747,682100,682742,683627,683824,684260,684828,685835,686820,689033,689366,689984,691581	
chr17	692353	695086	693438	694667	-	Cre17.g700750.t1.2	Cre17.g700750.t1.2		694506,694262,693875,692353	695086,694373,694092,693619	Of unknown function, possibly involved in membrane transport
chr17	695619	696895	696172	696668	-	Cre17.g700800.t1.2	Cre17.g700800.t1.2		695619	696895	
chr17	697239	699446	697517	699218	-	Cre17.g700850.t1.2	Cre17.g700850.t1.2		699110,698543,697239	699446,698773,698246	
chr17	699567	704328	699958	703833	+	Cre17.g700900.t1.1	Cre17.g700900.t1.1		699567,703064	702816,704328	
chr17	704737	706717	705500	706631	-	FDX5	Cre17.g700950.t1.2		706559,706122,705825,704737	706717,706251,705973,705542	Fe2S2 containing redox protein, predicted chloroplast localization
chr17	707781	714736	708796	714498	-	Cre17.g701000.t1.2	Cre17.g701000.t1.2		714253,714055,713639,713282,712953,712428,711949,711575,711172,710724,710222,709582,707781	714736,714142,713705,713349,713054,712533,712012,711665,711282,710869,710371,709985,709353	
chr17	714854	718356	715499	718228	-	Cre17.g701050.t1.2	Cre17.g701050.t1.2		718183,717966,716084,714854	718356,718055,717758,715499	
chr17	718467	723561	718559	722982	+	CPK8	Cre17.g701100.t1.2		718467,718988,719631,719909,720232,720655,720910,721528,722406,722844	718778,719136,719699,720005,720353,720727,721180,722037,722482,723561	
chr17	723981	733796	726770	733146	-	Cre17.g701150.t1.1	Cre17.g701150.t1.1		730737,723981	733796,730379	
chr17	735551	738261	736012	738234	-	RPL14	Cre17.g701200.t2.1		738129,737836,735551	738261,737965,736191	Cytosolic 60S large ribosomal subunit protein L14
chr17	735443	738261	736012	738234	-	RPL14	Cre17.g701200.t1.2		738129,737836,735443	738261,737965,736191	Cytosolic 60S large ribosomal subunit protein L14
chr17	738379	746940	738525	746374	+	FAP59	Cre17.g701250.t1.2		738379,738637,738808,739142,739468,739885,740275,740637,741130,741402,741869,742283,742701,743157,743943,744552,745008,745581,745894	738556,738731,738927,739207,739644,740103,740391,740771,741227,741492,742020,742403,742820,743282,744124,744717,745172,745697,746940	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; possible DRC component; part of 96-nm molecular ruler
chr17	746983	754638	747640	754184	-	Cre17.g701300.t1.2	Cre17.g701300.t1.2		754319,754096,753926,753798,753648,753416,753207,752700,752217,751765,751406,750940,750594,750192,749903,749454,749111,748616,746983	754638,754195,754013,753844,753725,753483,753299,752906,752305,751936,751489,751056,750665,750313,749990,749605,749255,748907,748347	
chr17	754759	758870	754796	758399	+	Cre17.g701350.t1.1	Cre17.g701350.t1.1		754759,755046,755218,755431,755778,756170,756503,756830,757138,757387,757913,758362	754917,755058,755287,755503,755838,756257,756603,756902,757169,757488,758083,758870	
chr17	754759	758870	754796	758399	+	Cre17.g701350.t2.1	Cre17.g701350.t2.1		754759,755218,755431,755778,756170,756503,756830,757138,757387,757913,758362	754924,755287,755503,755838,756257,756603,756902,757169,757488,758083,758870	
chr17	754759	758870	755236	758399	+	Cre17.g701350.t3.1	Cre17.g701350.t3.1		754759,755046,755218,755431,755778,756170,756503,756830,757138,757387,757913,758362	754917,755058,755287,755503,755838,756257,756603,756902,757169,757488,758083,758870	
chr17	758959	761380	759042	760686	+	Cre17.g701400.t1.2	Cre17.g701400.t1.2		758959,760686	760364,761380	
chr17	762109	765080	762188	764884	+	Cre17.g701450.t1.1	Cre17.g701450.t1.1		762109,764542	764411,765080	
chr17	765097	768818	765957	768634	-	DNJ1	Cre17.g701500.t1.2		768423,768248,767977,767755,767392,766670,765097	768818,768330,768167,767836,767506,766978,766319	DnaJ-like protein; probably cytosolic, as judged from absence of N-ter extension and from homology to cytosolic ATJ2 and ATJ3 from Arabidopsis; presumably involved in protein folding, since it contains N-terminal J-domain (pfam226), Cys-rich, DnaJ_CXXCX
chr17	769493	774838	769906	774766	-	Cre17.g701551.t1.1	Cre17.g701551.t1.1		774678,774230,773182,772539,771967,770184,769493	774838,774267,774123,772776,772304,771735,769911	
chr17	775439	777325	775627	776946	+	Cre17.g701600.t1.2	Cre17.g701600.t1.2		775439,776105,776403,776808	775853,776145,776489,777325	
chr17	777439	781144	777770	780624	+	RPL27	Cre17.g701650.t1.2		777439,777877,778144,779220,780249,780596	777788,778014,778194,779345,780295,781144	Cytosolic 60S large ribosomal subunit protein L27
chr17	781800	786028	782883	785782	-	FAB2	Cre17.g701700.t1.2		785748,785235,784984,784472,784064,783703,783238,781800	786028,785443,785070,784834,784177,783843,783424,782954	Plastidic ACP-like delta-9 stearate desaturase
chr17	781800	785911	782883	785782	-	FAB2	Cre17.g701700.t2.1		785748,785235,784984,784472,784064,783703,783238,781800	785911,785443,785070,784834,784177,783843,783424,782954	Plastidic ACP-like delta-9 stearate desaturase
chr17	788269	791320	788344	789853	+	Cre17.g701751.t1.1	Cre17.g701751.t1.1		788269,789285	789150,791320	
chr17	791419	793270	792326	793141	+	Cre17.g701800.t1.1	Cre17.g701800.t1.1		791419,792294,792480,792927	792183,792348,792813,793270	
chr17	793319	796340	793529	794732	+	Cre17.g701809.t1.2	Cre17.g701809.t1.2		793319,793861,794342	793645,794152,796340	
chr17	798137	803374	798613	801762	+	Cre17.g701850.t1.1	Cre17.g701850.t1.1		798137,798721,799479,800050,800538,800954,801497,801748	798653,799290,799772,800384,800785,801174,801670,803374	
chr17	803383	807748	804597	807597	-	Cre17.g701884.t1.1	Cre17.g701884.t1.1		807469,807197,806728,806374,805731,805300,803383	807748,807253,806938,806592,806230,805570,805080	
chr17	807849	815240	808080	813628	+	Cre17.g701917.t1.1	Cre17.g701917.t1.1		807849,808884,809098,809470,809845,810802,811353,811924,812412,812820,813363,813614	808688,808957,809336,809664,809881,811164,811646,812258,812659,813040,813536,815240	
chr17	815243	819538	816372	819383	-	Cre17.g701950.t1.2	Cre17.g701950.t1.2		819255,818983,818503,818149,817506,817075,815243	819538,819183,818713,818367,818005,817345,816855	
chr17	819639	822668	819866	822040	+	Cre17.g702002.t1.1	Cre17.g702002.t1.1		819639,820670,820884,821256,821631,821899	820474,820743,821122,821450,821702,822668	
chr17	822729	823720	822967	823246	+	Cre17.g702052.t1.1	Cre17.g702052.t1.1		822729,823061	822998,823720	
chr17	823733	825798	824397	825369	-	Cre17.g702102.t1.1	Cre17.g702102.t1.1		825350,823733	825798,824612	
chr17	828839	832648	829951	832187	-	CCS5	Cre17.g702150.t1.2		832083,831929,831474,831011,830513,828839	832648,831992,831718,831074,830666,830085	Thioredoxin-like protein, similar to Arabidopsis HCF164, plastid localized, lumen-facing, membrane anchored; involved in biogenesis of the cytochrome b6f complex [PMID: 1171887].
chr17	832769	837160	832862	836526	+	ANK29	Cre17.g702200.t1.2		832769,833406,833841,834438,834654,835134,835733,836072,836465	833018,833489,833898,834481,834829,835203,835796,836231,837160	protein of unknown function with ankyrin repeats
chr17	837449	845490	837659	844934	+	Cre17.g702250.t1.1	Cre17.g702250.t1.1		837449,837847,838077,838586,838918,839351,839776,840193,840533,840926,842219,842802,843518,844051,844714	837767,837900,838328,838770,839026,839495,839906,840255,840651,841946,842392,843154,843764,844490,845490	TRP-like ion channel protein. Predicted 5TMH (trans-membrane-helices)
chr17	845503	848008	845954	847947	-	Cre17.g702300.t1.1	Cre17.g702300.t1.1		847769,847365,847004,846637,846576,846311,845503	848008,847462,847057,846663,846595,846380,846026	
chr17	848159	859530	848487	858060	+	Cre17.g702351.t1.1	Cre17.g702351.t1.1		848159,848801,856752,857070,857522,857961	848548,856595,856883,857192,857660,859530	SET domain-containing protein; weak similarity (limited to the SET domain) to Zea mays SDG16, Oryza sativa SDG75, and Arabidopsis thaliana ATX4, SET16, SDG16 (At4g2791).  ChromoDB SDG3423
chr17	859803	865068	860258	864804	-	PUS5	Cre17.g702400.t1.2		864519,864214,863897,863430,863157,862612,862047,861600,860943,859803	865068,864243,863977,863639,863261,862731,862300,861773,861399,860627	
chr17	865169	868160	865246	868006	+	Cre17.g702451.t1.1	Cre17.g702451.t1.1		865169,865594,866206,866556,867257,867567	865440,866020,866421,866945,867348,868160	Protein with weak similarity (mostly limited to SET domain) to Arabidopsis thaliana SUVR3, SET2, SDG2 (At3g375) and Zea mays SDG116.  ChromoDB SDG349
chr17	868167	872041	869367	871963	-	TAB2	Cre17.g702500.t1.2		871606,871376,871033,870601,869842,868167	872041,871532,871130,870690,870122,869461	Conserved chloroplast PsaB RNA binding protein with DUF192domain; Tab2 is involved in PsaB translation and photosystem I assembly. PMID: 14633996
chr17	872137	873538	872728	873262	-	Cre17.g702550.t1.2	Cre17.g702550.t1.2		873109,872137	873538,872824	
chr17	873593	875608	875120	875466	-	Cre17.g702576.t1.1	Cre17.g702576.t1.1		873593	875608	
chr17	877119	888660	877897	886434	+	PTK5	Cre17.g702600.t1.1		877119,877880,878067,878236,878569,880102,880538,881635,882410,882730,883131,883360,883887,884156,884532,884806,885150,885560,885969,886304	877798,877992,878081,878356,879950,880231,881392,882271,882477,882911,883180,883637,883952,884273,884560,884934,885280,885648,886155,888660	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr17	888760	890700	889363	890576	-	Cre17.g702650.t1.1	Cre17.g702650.t1.1		888760	890700	High mobility group protein, ChromDB HMGB344; a putative chromatin-associated HMGB protein containing two HMG boxes
chr17	890839	896860	891094	895629	+	Cre17.g702700.t1.1	Cre17.g702700.t1.1		890839,891644,892428,892784,893437,894366,894901,895545	891129,891808,892497,892972,893522,894516,895065,896860	
chr17	897050	900591	897553	900513	-	Cre17.g702750.t1.2	Cre17.g702750.t1.2		900276,900056,899706,899180,898719,898461,898223,897050	900591,900137,899858,899253,898802,898517,898315,897796	May exihibit 3-dehydrosphinganine reductase and/or 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity
chr17	900712	904243	900809	904192	+	Cre17.g702800.t1.2	Cre17.g702800.t1.2		900712,901227,902082,902423,903114,903543,904013	900986,901355,902240,902854,903216,903806,904243	
chr17	904246	935911	905142	935333	-	CAV5	Cre17.g702850.t1.1		935654,934445,934047,933504,932982,932344,931953,931525,930072,929699,929286,928262,926942,926506,926132,925814,925410,924995,924387,923916,923597,923233,918011,917658,917294,916872,916576,916147,915780,915431,914833,914353,913918,913635,912301,912048,911682,910659,910422,910239,909846,909538,909218,908729,908308,907796,906378,904246	935911,935384,934150,933700,933115,932468,932064,931738,930270,929765,929372,929038,928056,926593,926189,925956,925471,925136,924446,924038,923665,923340,922936,917776,917438,916982,916635,916357,915928,915501,914983,914509,914088,913705,912384,912116,911785,910763,910529,910249,909934,909699,909310,908854,908434,908004,907508,906102	Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582)
chr17	936512	938841	937548	938691	-	Cre17.g702900.t1.2	Cre17.g702900.t1.2		938421,937987,936512	938841,938204,937729	Of unknown function, possibly involved in membrane transport
chr17	940122	942686	940515	941654	+	Cre17.g702950.t1.2	Cre17.g702950.t1.2		940122,941005,941473	940788,941222,942686	Of unknown function, possibly involved in membrane transport
chr17	944356	949051	944490	949017	-	Cre17.g702976.t1.1	Cre17.g702976.t1.1		948724,944356	949051,944490	
chr17	949352	954428	949690	953809	+	Cre17.g703000.t1.1	Cre17.g703000.t1.1		949352,950151,950474,950837,951293,951646,952163,953683	949895,950201,950643,950963,951406,951918,953286,954428	
chr17	954732	964713	954865	964105	+	Cre17.g703050.t1.2	Cre17.g703050.t1.2		954732,955388,955760,956292,959168,959627,960559,961114,961597,962749,963280,963811	955072,955540,955807,956525,959283,960209,960642,961236,962457,963021,963327,964713	
chr17	965434	968301	967733	968218	-	Cre17.g703075.t1.1	Cre17.g703075.t1.1		968076,965434	968301,967759	
chr17	971632	974093	973338	973726	+	Cre17.g703101.t1.1	Cre17.g703101.t1.1		971632,972150,972331,972724	972048,972263,972447,974093	
chr17	974152	975840	974237	975232	+	Cre17.g703126.t1.1	Cre17.g703126.t1.1		974152,974558	974385,975840	
chr17	981466	984361	983941	984125	-	Cre17.g703151.t1.1	Cre17.g703151.t1.1		981466	984361	
chr17	985672	990183	985829	989627	+	MSD5	Cre17.g703176.t1.1		985672,986300,986649,986932,987547,988435,988977,989257,989573	986066,986410,986759,987018,987648,988566,989044,989317,990183	
chr17	990476	994701	991514	994499	-	Cre17.g703200.t1.2	Cre17.g703200.t1.2		994298,993871,993378,993063,992579,992010,990476	994701,993972,993478,993145,992688,992216,991742	
chr17	995158	1000343	995245	999818	+	Cre17.g703250.t1.2	Cre17.g703250.t1.2		995158,995430,995743,996121,996426,996935,997328,997689,997997,998392,998856,999099,999755	995304,995469,995928,996191,996504,997042,997393,997871,998077,998482,998920,999236,1000343	
chr17	1000412	1008203	1000505	1006906	+	Cre17.g703300.t1.1	Cre17.g703300.t1.1		1000412,1001266,1001521,1001773,1001990,1002351,1002599,1003798,1004945,1005935,1006609	1000776,1001357,1001555,1001845,1002139,1002391,1003514,1004739,1005714,1006340,1008203	
chr17	1008217	1009824	1009038	1009273	-	Cre17.g703350.t1.1	Cre17.g703350.t1.1		1008217	1009824	
chr17	1012306	1020671	1013020	1018508	+	Cre17.g703400.t1.1	Cre17.g703400.t1.1		1012306,1013672,1015921,1016548,1017648,1018265	1013398,1015715,1016321,1017455,1018110,1020671	
chr17	1020866	1029667	1021115	1028934	+	Cre17.g703450.t1.1	Cre17.g703450.t1.1		1020866,1021205,1021567,1022008,1022427,1022630,1022865,1023241,1024835,1025111,1027943,1028578,1028781	1021118,1021233,1021746,1022116,1022494,1022681,1023015,1024439,1024897,1027791,1028291,1028643,1029667	
chr17	1029796	1030777	1029828	1030756	+	Cre17.g703473.t1.1	Cre17.g703473.t1.1		1029796,1030174,1030645	1029840,1030257,1030777	
chr17	1031020	1033305	1031680	1032644	-	Cre17.g703495.t1.2	Cre17.g703495.t1.2		1032933,1032579,1032162,1031915,1031020	1033305,1032762,1032359,1032036,1031688	
chr17	1033939	1037065	1034731	1036770	-	Cre17.g703550.t1.2	Cre17.g703550.t1.2		1036659,1036326,1036124,1035708,1035383,1035016,1033939	1037065,1036401,1036161,1035893,1035442,1035252,1034827	
chr17	1037244	1044885	1037937	1044457	-	OFD1	Cre17.g703600.t1.2		1044677,1044285,1044087,1043800,1043444,1042985,1042579,1042235,1041829,1041447,1041229,1040871,1039093,1038583,1038266,1037244	1044885,1044564,1044189,1043953,1043614,1043287,1042863,1042447,1041994,1041735,1041307,1040912,1040403,1038931,1038390,1038084	Homolog of Oral-facial-digital syndrome protein 1; found in basal body proteome as BUG11 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]; Mammalian homolog is required for ciliogenesis and structure of distal fibers of centriole.
chr17	1037244	1044885	1037937	1044457	-	OFD1	Cre17.g703600.t2.1		1044677,1044285,1044087,1043800,1043444,1042985,1042579,1042235,1041829,1041447,1041229,1039093,1038583,1038266,1037244	1044885,1044564,1044189,1043953,1043614,1043287,1042863,1042447,1041994,1041735,1041307,1040403,1038931,1038390,1038084	Homolog of Oral-facial-digital syndrome protein 1; found in basal body proteome as BUG11 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]; Mammalian homolog is required for ciliogenesis and structure of distal fibers of centriole.
chr17	1045266	1047997	1045744	1047720	+	Cre17.g703650.t1.1	Cre17.g703650.t1.1		1045266,1045851,1047720	1045776,1047571,1047997	
chr17	1048004	1051985	1048552	1051932	-	SCLB1	Cre17.g703700.t1.1		1051827,1051507,1051096,1050626,1050318,1049989,1049598,1049187,1048885,1048004	1051985,1051617,1051161,1050824,1050421,1050099,1049728,1049355,1049007,1048699	Succinate-CoA ligase beta chain, possibly cytosolic; similarity to Arabidopsis mitochondrial SCL (GenBank NP_179632), but lacking organelle targeting sequence; apparently minority splice variant of SCLB1a
chr17	1052136	1071247	1052282	1070510	+	Cre17.g703750.t1.2	Cre17.g703750.t1.2		1052136,1052898,1053439,1053817,1054391,1054701,1055067,1055484,1055761,1056176,1056543,1056792,1057725,1058106,1058562,1059033,1059541,1060030,1060334,1060846,1061318,1061687,1062140,1062548,1063119,1063703,1064009,1064344,1064620,1065061,1065502,1065952,1066488,1066874,1067282,1068612,1068908	1052363,1053086,1053548,1053969,1054466,1054832,1055246,1055585,1055934,1056292,1056648,1057323,1057869,1058306,1058865,1059226,1059739,1060119,1060451,1061022,1061459,1061926,1062252,1062644,1063376,1063801,1064126,1064464,1064769,1065223,1065775,1066273,1066622,1067035,1068372,1068688,1071247	
chr17	1071629	1076195	1072292	1075836	-	DUR3C	Cre17.g703800.t1.1		1075763,1075571,1075324,1075167,1074972,1074495,1074239,1073543,1072838,1071629	1076195,1075667,1075396,1075189,1075016,1074789,1074328,1073998,1073358,1072632	Na+/solute symporter family
chr17	1076250	1080695	1077409	1080491	-	DCC1	Cre17.g703850.t1.2		1080431,1080086,1079721,1079000,1077718,1076250	1080695,1080365,1080009,1079451,1078754,1077541	Outer dynein arm-docking complex subunit 1 (ODA-DC1); Mr 105000
chr17	1080806	1090529	1080922	1089866	+	IFT172	Cre17.g703900.t1.2		1080806,1081104,1081923,1082757,1083195,1083830,1084301,1085174,1085788,1086196,1086512,1087078,1087509,1089169,1089572	1081005,1081298,1082505,1083007,1083555,1084100,1084554,1085539,1085991,1086357,1086889,1087254,1088984,1089381,1090529	Component of peripheral subcomplex of IFT-B particle; contains WD40 and TPR repeats
chr17	1090880	1092885	1091494	1092687	-	Cre17.g703932.t1.2	Cre17.g703932.t1.2		1092663,1090880	1092885,1091701	
chr17	1096406	1102777	1096773	1101620	+	Cre17.g703950.t1.2	Cre17.g703950.t1.2		1096406,1097130,1097597,1097793,1098071,1098335,1098516,1098669,1099137,1099429,1099736,1099918,1100178,1100449,1100679,1101026,1101525	1096941,1097420,1097635,1097850,1098122,1098387,1098570,1098774,1099204,1099538,1099771,1100000,1100266,1100526,1100799,1101215,1102777	
chr17	1103106	1105467	1104730	1105241	+	Cre17.g703976.t1.1	Cre17.g703976.t1.1		1103106,1103995,1105155	1103546,1104896,1105467	
chr17	1105516	1111837	1106079	1111370	+	Cre17.g704000.t1.2	Cre17.g704000.t1.2		1105516,1106410,1107028,1107238,1107445,1107622,1107875,1108096,1109054,1109401,1109627,1109847,1110162,1110397,1110650,1110930,1111299	1106193,1106706,1107066,1107295,1107496,1107674,1107920,1108201,1109118,1109510,1109662,1109929,1110250,1110474,1110770,1111119,1111837	
chr17	1111850	1117265	1112258	1116330	-	Cre17.g704050.t1.1	Cre17.g704050.t1.1		1116946,1115572,1114999,1114596,1114338,1114067,1113744,1113384,1111850	1117265,1116621,1115275,1114758,1114411,1114105,1113816,1113520,1113113	
chr17	1117756	1120487	1118163	1120415	+	Cre17.g704100.t1.2	Cre17.g704100.t1.2		1117756,1119043,1119348	1118880,1119199,1120487	
chr17	1120490	1123665	1121045	1123413	-	GDP5	Cre17.g704150.t1.1		1123340,1122702,1122235,1121866,1121469,1120490	1123665,1123234,1122444,1121924,1121706,1121300	
chr17	1123720	1128215	1125462	1127546	-	Cre17.g704200.t1.1	Cre17.g704200.t1.1		1128204,1127899,1127521,1127206,1126846,1126402,1125963,1125598,1123720	1128215,1127906,1127642,1127336,1126926,1126548,1126034,1125699,1125492	
chr17	1128416	1134397	1128666	1133013	+	Cre17.g704251.t1.1	Cre17.g704251.t1.1		1128416,1128659,1129138,1129498,1129816,1130134,1130453,1130828,1131203,1131615,1131992,1132363,1132639,1132891	1128573,1128712,1129194,1129530,1129848,1130166,1130506,1130881,1131235,1131668,1132045,1132395,1132692,1134397	
chr17	1135299	1150245	1135666	1150115	-	FAP47	Cre17.g704300.t1.1		1150028,1149808,1149496,1148521,1148019,1147558,1147133,1146663,1146300,1145967,1145602,1144905,1144218,1143843,1143362,1142895,1142551,1141814,1141163,1140823,1140153,1139875,1139470,1138559,1138116,1137574,1135299	1150245,1149924,1149588,1148886,1148141,1147788,1147339,1146947,1146515,1146176,1145841,1145268,1144714,1143993,1143649,1143156,1142726,1142375,1141500,1140965,1140645,1140012,1139714,1139255,1138300,1137970,1137375	Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation; weakly Similar to Hydrocephalus 3
chr17	1150366	1153477	1150452	1152708	+	Cre17.g704350.t1.2	Cre17.g704350.t1.2		1150366,1150695,1150904,1151201,1151440,1151725,1152026,1152552	1150500,1150766,1151021,1151283,1151587,1151860,1152188,1153477	
chr17	1153480	1158975	1154064	1158774	-	Cre17.g704400.t1.1	Cre17.g704400.t1.1		1158355,1157829,1157600,1157289,1156658,1155896,1155472,1153480	1158975,1158028,1157700,1157483,1157038,1156409,1155758,1155318	
chr17	1159106	1164367	1159260	1163911	+	Cre17.g704450.t1.1	Cre17.g704450.t1.1		1159106,1159742,1160114,1160481,1160801,1161501,1162128,1162663	1159613,1159938,1160205,1160660,1161385,1161951,1162441,1164367	
chr17	1164416	1166813	1164453	1166655	+	Cre17.g704500.t1.1	Cre17.g704500.t1.1		1164416,1165458,1165757,1166086	1165186,1165606,1165889,1166813	
chr17	1167777	1171295	1168117	1171134	-	HRF1	Cre17.g704550.t1.2		1170720,1170401,1170101,1169498,1169144,1168542,1167777	1171295,1170482,1170220,1169568,1169296,1168809,1168212	
chr17	1171396	1173729	1171456	1173450	+	Cre17.g704600.t1.2	Cre17.g704600.t1.2		1171396,1171661,1171883,1172103,1172424,1172717,1173051,1173329	1171510,1171704,1171968,1172266,1172516,1172798,1173108,1173729	
chr17	1173776	1176580	1173843	1176274	+	Cre17.g704650.t1.1	Cre17.g704650.t1.1		1173776,1173924,1174198,1174475,1175027,1175217,1175454	1173858,1174033,1174342,1174851,1175070,1175325,1176580	
chr17	1176636	1181937	1176874	1181226	+	Cre17.g704700.t1.1	Cre17.g704700.t1.1		1176636,1177239,1177672,1178023,1178366,1178906,1179660,1180065	1177113,1177435,1177772,1178256,1178779,1179413,1179931,1181937	
chr17	1182306	1188337	1182386	1187598	+	Cre17.g704750.t1.1	Cre17.g704750.t1.1		1182306,1182946,1183386,1183712,1184209,1184773,1185718,1186263	1182787,1183142,1183486,1183858,1184655,1185547,1186025,1188337	
chr17	1188352	1189795	1189403	1189752	-	Cre17.g704802.t1.1	Cre17.g704802.t1.1		1188352	1189795	
chr17	1192113	1194433	1192765	1194344	-	Cre17.g704850.t1.2	Cre17.g704850.t1.2		1194160,1193918,1193517,1193126,1192113	1194433,1194010,1193611,1193180,1192884	
chr17	1194531	1195960	1195215	1195844	-	Cre17.g704901.t1.1	Cre17.g704901.t1.1		1195807,1194531	1195960,1195604	
chr17	1196139	1209830	1196682	1209405	+	Cre17.g704950.t1.1	Cre17.g704950.t1.1		1196139,1196509,1196654,1199969,1200173,1200464,1200735,1201162,1201540,1201875,1202143,1202368,1202755,1203026,1203431,1203782,1204103,1204397,1204706,1205004,1205220,1205586,1205895,1206064,1206458,1206744,1207097,1207359,1207611,1208255,1208533,1208956	1196391,1196586,1199853,1200076,1200325,1200595,1200965,1201353,1201720,1202011,1202243,1202614,1202876,1203290,1203682,1203964,1204279,1204573,1204873,1205084,1205387,1205759,1205960,1206303,1206559,1206940,1207233,1207474,1207796,1208367,1208816,1209830	
chr17	1209839	1214698	1210470	1214481	-	FAP223	Cre17.g705000.t1.2		1214450,1214316,1214173,1214013,1213733,1213340,1212848,1212007,1211587,1211150,1210847,1209839	1214698,1214383,1214230,1214089,1213930,1213615,1213111,1212232,1211777,1211317,1210945,1210656	Calcium-dependent Protein Kinase Homolog 1; found in the flagellar proteome as FAP223 [PMID: 15998802]
chr17	1214919	1222707	1215415	1221640	+	LIC1	Cre17.g705050.t1.2		1214919,1215845,1216223,1216739,1216930,1217178,1217460,1217730,1218183,1218403,1218733,1219071,1219363,1219927,1220732,1221208,1221592	1215709,1215852,1216409,1216818,1216958,1217291,1217553,1217934,1218212,1218487,1218821,1219204,1219606,1220392,1220883,1221327,1222707	some similarity to neuromediator-gated ion channels (nicotinic acetylcholine-gated ion channel); belongs to a small family of three linked genes
chr17	1226218	1228495	1226428	1227812	+	Cre17.g705100.t1.2	Cre17.g705100.t1.2		1226218,1226879,1227201,1227466,1227758	1226518,1226929,1227248,1227501,1228495	
chr17	1226223	1228605	1226428	1227812	+	Cre17.g705100.t2.1	Cre17.g705100.t2.1		1226223,1226879,1227201,1227466,1227758	1226518,1226929,1227248,1227501,1228605	
chr17	1228819	1234318	1229084	1233652	+	Cre17.g705150.t1.1	Cre17.g705150.t1.1		1228819,1229698,1230106,1231391,1231827,1232757,1233098	1229488,1229882,1231064,1231542,1232430,1232904,1234318	
chr17	1234959	1242965	1235370	1241457	+	Cre17.g705200.t1.1	Cre17.g705200.t1.1		1234959,1235347,1235738,1236990,1237380,1237880,1238279,1240078	1235096,1235482,1236783,1237138,1237647,1238071,1239962,1242965	
chr17	1243659	1251827	1244125	1249997	+	Cre17.g705250.t1.1	Cre17.g705250.t1.1		1243659,1244424,1244829,1245245,1245740,1246235,1246620,1247326,1247847,1248581,1248980,1249470,1249829	1244177,1244515,1244892,1245541,1245898,1246466,1246797,1247550,1248389,1248755,1249323,1249553,1251827	
chr17	1252305	1254759	1252886	1254339	-	PHC68	Cre17.g705300.t1.2		1254594,1254249,1253716,1253415,1252305	1254759,1254395,1254009,1253516,1253228	
chr17	1252305	1254898	1252886	1254339	-	PHC68	Cre17.g705300.t2.1		1254594,1254249,1253716,1253415,1252305	1254898,1254395,1254009,1253516,1253228	
chr17	1255009	1256588	1255824	1256470	-	CSB64	Cre17.g705316.t1.2		1256353,1255009	1256588,1255947	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr17	1257077	1267548	1258171	1267375	-	CDPKK2	Cre17.g705350.t1.1		1267292,1267097,1266850,1266662,1266425,1266021,1265265,1264898,1264410,1263975,1263619,1263195,1262775,1261780,1261420,1259764,1259454,1258940,1258623,1257077	1267548,1267218,1267007,1266772,1266592,1266182,1265341,1265055,1264582,1264137,1263745,1263374,1262933,1262685,1261560,1261225,1259573,1259197,1258756,1258355	
chr17	1267699	1270315	1267807	1269790	+	POA1	Cre17.g705400.t1.2		1267699,1267974,1268148,1268431,1268828,1269289,1269646	1267880,1268068,1268229,1268558,1268938,1269405,1270315	20S proteasome alpha subunit A (type 6)
chr17	1270499	1274026	1270793	1273551	+	LCI26	Cre17.g705450.t1.2		1270499,1271306,1271908,1272287,1272831,1273394	1271142,1271709,1272124,1272567,1273141,1274026	Contains Ubox (smart00504), Modified RING finger domain without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. SOSUI prediction: 5 transmembrane region. Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr17	1275409	1279411	1275934	1278771	+	PHC23	Cre17.g705500.t1.1		1275409,1275828,1276444	1275558,1276277,1279411	
chr17	1279719	1283647	1279864	1283321	+	Cre17.g705550.t1.2	Cre17.g705550.t1.2		1279719,1280953,1281151,1281475,1281894,1283000	1280767,1281015,1281284,1281684,1282839,1283647	
chr17	1283673	1285968	1283945	1285664	-	Cre17.g705600.t1.2	Cre17.g705600.t1.2		1285540,1285219,1284714,1284387,1283673	1285968,1285393,1284980,1284532,1284157	
chr17	1286069	1297680	1286117	1297410	+	Cre17.g705650.t1.1	Cre17.g705650.t1.1		1286069,1286415,1286640,1286873,1288650,1289164,1289542,1289850,1291219,1291451,1292730,1293280,1295423,1296320,1297314	1286269,1286508,1286753,1288494,1289037,1289419,1289734,1291038,1291321,1292557,1293070,1295271,1296047,1297116,1297680	
chr17	1286069	1297680	1286117	1297410	+	Cre17.g705650.t2.1	Cre17.g705650.t2.1		1286069,1286430,1286640,1286873,1288650,1289164,1289542,1289850,1291219,1291451,1292730,1293280,1295423,1296320,1297314	1286269,1286508,1286753,1288494,1289037,1289419,1289734,1291038,1291321,1292557,1293070,1295271,1296047,1297116,1297680	
chr17	1297705	1303138	1298705	1302862	-	GGK1	Cre17.g705700.t1.2		1302754,1302510,1302081,1301633,1301289,1300858,1300431,1299449,1297705	1303138,1302615,1302238,1301752,1301409,1301066,1300622,1300131,1299330	Gamma-glutamyl kinase (GK)
chr17	1303863	1307348	1304909	1307034	-	Cre17.g705750.t1.2	Cre17.g705750.t1.2		1307209,1306761,1306353,1305870,1303863	1307348,1307039,1306595,1305986,1305569	
chr17	1307423	1310908	1308462	1310585	-	PROB2	Cre17.g705778.t1.1		1310761,1310312,1309904,1309416,1307423	1310908,1310590,1310146,1309532,1308930	Gamma-glutamyl kinase, GK
chr17	1310973	1312988	1311549	1312742	-	Cre17.g705806.t1.1	Cre17.g705806.t1.1		1312478,1310973	1312988,1312149	
chr17	1313043	1315508	1313706	1315058	-	Cre17.g705836.t1.2	Cre17.g705836.t1.2		1315211,1314785,1314511,1313043	1315508,1315058,1314690,1314264	
chr17	1315563	1318138	1316600	1317916	-	Cre17.g705843.t1.2	Cre17.g705843.t1.2		1318069,1317646,1317412,1315563	1318138,1317916,1317549,1317158	
chr17	1318233	1323138	1318872	1323059	-	GGK2	Cre17.g705850.t1.2		1322975,1322426,1322080,1321611,1321129,1320779,1320349,1319956,1319469,1318233	1323138,1322531,1322195,1321658,1321248,1320899,1320557,1320147,1319668,1319074	related to Glutamate 5-kinase (Gamma-glutamyl kinase) (GK)
chr17	1323279	1325600	1323512	1324726	+	Cre17.g705900.t1.2	Cre17.g705900.t1.2		1323279,1323863,1324095,1324696	1323595,1323917,1324157,1325600	
chr17	1325573	1327728	1325594	1327401	-	Cre17.g705950.t1.1	Cre17.g705950.t1.1		1327224,1327078,1326823,1325983,1325662,1325573	1327728,1327140,1326930,1326074,1325692,1325603	Related to GCN5
chr17	1325603	1327728	1325921	1327401	-	Cre17.g705950.t2.1	Cre17.g705950.t2.1		1327224,1327078,1326823,1325983,1325603	1327728,1327140,1326930,1326074,1325934	Related to GCN5
chr17	1327839	1332060	1328172	1331122	+	Cre17.g706000.t1.1	Cre17.g706000.t1.1		1327839,1329867,1330196,1330512	1329742,1329938,1330274,1332060	
chr17	1332063	1367218	1332844	1366697	-	SRR17	Cre17.g706050.t1.1		1367023,1366548,1366294,1365550,1365268,1365056,1364624,1364129,1363834,1363534,1363203,1362644,1362350,1362046,1361656,1361391,1361076,1360721,1360505,1360266,1360138,1359709,1359452,1359055,1358794,1358451,1358118,1357740,1357463,1357236,1356794,1356437,1356163,1355631,1355125,1354878,1354462,1354151,1353983,1353534,1353281,1352897,1352700,1352399,1351998,1351673,1351351,1350353,1349813,1349453,1349213,1348875,1348398,1347984,1347582,1347325,1346719,1346357,1345827,1345496,1345054,1344345,1343899,1343653,1343362,1343005,1342635,1342170,1341648,1341116,1340826,1340406,1340218,1339776,1339310,1338937,1338462,1338058,1337723,1337368,1336880,1336672,1336284,1335966,1334386,1332063	1367218,1366717,1366417,1365639,1365289,1365124,1364741,1364282,1363963,1363647,1363245,1362849,1362406,1362130,1361865,1361452,1361253,1360889,1360565,1360342,1360157,1359824,1359479,1359235,1358873,1358505,1358147,1357872,1357622,1357324,1357000,1356617,1356234,1355964,1355442,1355003,1354742,1354283,1354043,1353805,1353374,1353089,1352779,1352575,1352152,1351871,1351518,1350425,1350035,1349549,1349262,1349085,1348610,1348246,1347742,1347458,1347171,1346540,1346193,1345567,1345383,1344538,1344148,1343760,1343473,1343164,1342749,1342470,1341849,1341317,1340879,1340675,1340235,1339993,1339509,1339018,1338647,1338245,1337859,1337517,1337010,1336786,1336559,1336083,1335804,1333185	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr17	1332063	1367218	1332844	1366697	-	SRR17	Cre17.g706050.t2.1		1367023,1366548,1366294,1365550,1365268,1365056,1364624,1364129,1363834,1363534,1363203,1362644,1362350,1362046,1361656,1361391,1361076,1360721,1360505,1360266,1360138,1359709,1359452,1359055,1358794,1358451,1358118,1357740,1357463,1357236,1356794,1356437,1356163,1355631,1355125,1354878,1354462,1354151,1353983,1353534,1353281,1352897,1352700,1352399,1351998,1351673,1351351,1350353,1349813,1349453,1349213,1348875,1348398,1347984,1347582,1347325,1346719,1346357,1345827,1345496,1345054,1344345,1343899,1343653,1343362,1343005,1342635,1342170,1341648,1341116,1340826,1340406,1340218,1339776,1339310,1338937,1338462,1338058,1337723,1337368,1336880,1336672,1336284,1335966,1334386,1332063	1367218,1366717,1366417,1365639,1365289,1365124,1364741,1364282,1363963,1363647,1363245,1362849,1362406,1362130,1361865,1361452,1361253,1360889,1360565,1360342,1360157,1359824,1359479,1359235,1358873,1358505,1358147,1357866,1357622,1357324,1357000,1356617,1356234,1355964,1355442,1355003,1354742,1354283,1354043,1353805,1353374,1353089,1352779,1352575,1352152,1351871,1351518,1350425,1350035,1349549,1349262,1349085,1348610,1348246,1347742,1347458,1347171,1346540,1346193,1345567,1345383,1344538,1344148,1343760,1343473,1343164,1342749,1342470,1341849,1341317,1340879,1340675,1340235,1339993,1339509,1339018,1338647,1338245,1337859,1337517,1337010,1336786,1336559,1336083,1335804,1333185	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr17	1332063	1367218	1332844	1366697	-	SRR17	Cre17.g706050.t3.1		1367023,1366548,1366294,1365550,1365268,1365056,1364624,1364129,1363834,1363534,1363203,1362644,1362350,1362046,1361656,1361391,1361076,1360721,1360505,1360266,1360138,1359709,1359452,1359055,1358794,1358451,1358118,1357740,1357463,1357236,1356794,1356437,1356163,1355631,1355125,1354878,1354462,1354151,1353983,1353534,1353281,1352897,1352700,1352399,1351998,1351673,1351351,1350353,1349813,1349453,1349213,1348875,1348398,1347984,1347582,1347325,1346719,1346357,1345827,1345496,1345054,1344345,1343899,1343653,1343362,1343005,1342635,1342170,1341648,1341116,1340826,1340406,1340218,1339776,1339310,1338937,1338462,1338058,1337723,1337368,1336880,1336672,1336284,1335966,1334386,1332063	1367218,1366717,1366417,1365639,1365289,1365124,1364738,1364282,1363963,1363647,1363245,1362849,1362406,1362130,1361865,1361452,1361253,1360889,1360565,1360342,1360157,1359824,1359479,1359235,1358873,1358505,1358147,1357866,1357622,1357324,1357000,1356617,1356234,1355964,1355442,1355003,1354742,1354283,1354043,1353805,1353374,1353089,1352779,1352575,1352152,1351871,1351518,1350425,1350035,1349549,1349262,1349085,1348610,1348246,1347742,1347458,1347171,1346540,1346193,1345567,1345383,1344538,1344148,1343760,1343473,1343164,1342749,1342470,1341849,1341317,1340879,1340675,1340235,1339993,1339509,1339018,1338647,1338245,1337859,1337517,1337010,1336786,1336559,1336083,1335804,1333185	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr17	1367394	1370673	1367521	1370290	+	Cre17.g706150.t1.1	Cre17.g706150.t1.1		1367394,1368189,1368734,1369291,1369758,1370181	1367561,1368432,1368841,1369555,1369966,1370673	
chr17	1370721	1373932	1370951	1373662	+	Cre17.g706200.t1.2	Cre17.g706200.t1.2		1370721,1371296,1371652,1372113,1372463,1373004,1373241	1371146,1371394,1371731,1372198,1372754,1373087,1373932	
chr17	1374051	1381152	1374166	1380525	+	Cre17.g706250.t1.1	Cre17.g706250.t1.1		1374051,1374384,1374675,1375383,1375810,1376169,1376637,1376998,1377572,1380150	1374256,1374485,1375121,1375505,1375931,1376310,1376717,1377324,1379758,1381152	
chr17	1381201	1390872	1381465	1390175	+	XPD1	Cre17.g706300.t1.1		1381201,1381847,1382324,1382761,1383425,1384027,1384545,1384950,1385204,1385459,1385646,1385959,1386297,1386533,1387031,1387367,1387878,1388271,1388826,1389569,1389739,1389989	1381588,1381966,1382456,1383087,1383564,1384173,1384625,1385025,1385307,1385511,1385721,1386000,1386341,1386697,1387087,1387491,1387965,1388363,1388984,1389623,1389854,1390872	DNA repair helicase. Related to human XPD and yeast Rad3p.
chr17	1391332	1399790	1392801	1399577	-	Cre17.g706350.t1.1	Cre17.g706350.t1.1		1399501,1399059,1397487,1396958,1395645,1395214,1394782,1394406,1391332	1399790,1399275,1398730,1397205,1396669,1395318,1394920,1394486,1394217	
chr17	1399923	1402310	1400727	1402086	-	Cre17.g706400.t1.2	Cre17.g706400.t1.2		1401915,1401549,1401195,1399923	1402310,1401615,1401238,1400988	
chr17	1403505	1411220	1404565	1411075	-	LIC3	Cre17.g706450.t1.1		1410700,1410324,1410099,1409619,1409281,1408620,1408112,1407751,1407394,1405410,1405007,1403505	1411220,1410403,1410141,1409718,1409374,1408950,1408226,1407836,1407533,1407041,1405100,1404613	some similarity to neuromediator-gated ion channels (nicotinic acetylcholine-gated ion channel); belongs to a small family of three linked genes
chr17	1411277	1416280	1412104	1416180	-	Cre17.g706500.t1.1	Cre17.g706500.t1.1		1416114,1415709,1415087,1414450,1411277	1416280,1416017,1415479,1414827,1414090	
chr17	1416455	1420850	1418089	1420102	-	Cre17.g706550.t1.1	Cre17.g706550.t1.1		1420490,1419603,1419156,1418595,1416455	1420850,1420103,1419289,1418861,1418383	
chr17	1420901	1423580	1421989	1423382	-	Cre17.g706600.t1.2	Cre17.g706600.t1.2		1423286,1422744,1422570,1422260,1420901	1423580,1422899,1422627,1422345,1422094	
chr17	1424421	1428383	1424851	1427717	+	VPS22	Cre17.g706650.t1.2		1424421,1425031,1425389,1425929,1426365,1426733,1427195,1427558	1424902,1425078,1425538,1425985,1426487,1426864,1427272,1428383	Expressed Protein. Similar to VPS22/SNF8, a VPS36-domain protein, component of the ESCRT-II complex involved in protein sorting in endosomes.
chr17	1428431	1459527	1428579	1458483	+	Cre17.g706700.t1.1	Cre17.g706700.t1.1		1428431,1428744,1428950,1429343,1429647,1430288,1430458,1430754,1430991,1431462,1431934,1432377,1432616,1432932,1433236,1433844,1434334,1434645,1435125,1435541,1435873,1436674,1436925,1437393,1438086,1438636,1439126,1439565,1439982,1440236,1440717,1440980,1441437,1441958,1442605,1443068,1443925,1444470,1444919,1445234,1445642,1446104,1446427,1446704,1447143,1447615,1447954,1448288,1448574,1449336,1449616,1449949,1451212,1451443,1453397,1453847,1454158,1454470,1454801,1455165,1455446,1455740,1456075,1456471,1457343	1428627,1428804,1429044,1429440,1430043,1430310,1430524,1430868,1431058,1431631,1432096,1432475,1432684,1432980,1433366,1433969,1434447,1434747,1435234,1435749,1436369,1436760,1437088,1437747,1438306,1438750,1439375,1439649,1440070,1440308,1440777,1441137,1441682,1442446,1442849,1443427,1444300,1444649,1445020,1445334,1445920,1446232,1446507,1446960,1447393,1447745,1448031,1448417,1448669,1449464,1449641,1450942,1451316,1451508,1453622,1453937,1454292,1454559,1454924,1455211,1455524,1455829,1456217,1457152,1459527	
chr17	1428431	1459527	1428579	1458483	+	Cre17.g706700.t2.1	Cre17.g706700.t2.1		1428431,1428759,1428950,1429343,1429647,1430288,1430458,1430754,1430991,1431462,1431934,1432377,1432616,1432932,1433236,1433844,1434334,1434645,1435125,1435541,1435873,1436674,1436925,1437393,1438086,1438636,1439126,1439565,1439982,1440236,1440717,1440980,1441437,1441958,1442605,1443068,1443925,1444470,1444919,1445234,1445642,1446104,1446427,1446704,1447143,1447615,1447954,1448288,1448574,1449336,1449616,1449949,1451212,1451443,1453397,1453847,1454158,1454470,1454801,1455165,1455446,1455740,1456075,1456471,1457343	1428627,1428804,1429044,1429440,1430043,1430310,1430524,1430868,1431058,1431631,1432096,1432475,1432684,1432980,1433366,1433969,1434447,1434747,1435234,1435749,1436369,1436760,1437088,1437747,1438306,1438750,1439375,1439649,1440070,1440308,1440777,1441137,1441682,1442446,1442849,1443427,1444300,1444649,1445020,1445334,1445920,1446232,1446507,1446960,1447393,1447745,1448031,1448417,1448669,1449464,1449641,1450942,1451316,1451508,1453622,1453937,1454292,1454559,1454924,1455211,1455524,1455829,1456217,1457152,1459527	
chr17	1459936	1462712	1460016	1462340	+	Cre17.g706800.t1.2	Cre17.g706800.t1.2		1459936,1460163,1460423,1460764,1461067,1461535,1461954,1462240	1460072,1460216,1460505,1460815,1461196,1461596,1462034,1462712	
chr17	1463047	1465495	1463168	1465079	+	Cre17.g706850.t1.1	Cre17.g706850.t1.1		1463047,1463390,1463523,1463935,1464250,1464925	1463284,1463450,1463692,1464049,1464587,1465495	
chr17	1465831	1472435	1465928	1471360	+	CNG3	Cre17.g706900.t1.2		1465831,1466175,1466774,1467308,1467831,1468349,1468842,1469204,1469714,1470350,1471210	1466097,1466523,1466957,1467499,1467985,1468514,1468976,1469257,1469857,1470853,1472435	
chr17	1475301	1479932	1475373	1479103	+	Cre17.g706950.t1.2	Cre17.g706950.t1.2		1475301,1475625,1476161,1476538,1477247,1477909,1478231,1478928	1475496,1475738,1476223,1476615,1477404,1478049,1478416,1479932	
chr17	1480805	1489680	1481957	1489365	-	Cre17.g707000.t1.2	Cre17.g707000.t1.2		1488345,1487775,1485895,1484255,1483264,1482689,1480805	1489680,1488144,1487696,1485382,1484112,1482997,1482359	
chr17	1489751	1496050	1490055	1495815	-	UAF5	Cre17.g707050.t1.2		1495739,1495277,1494823,1494468,1494151,1493834,1493356,1493001,1492720,1492436,1492129,1491595,1491070,1490831,1490504,1489751	1496050,1495430,1494886,1494595,1494232,1493926,1493652,1493128,1492771,1492485,1492201,1491754,1491152,1490898,1490567,1490325	
chr17	1496151	1505856	1496225	1505380	+	Cre17.g707100.t1.1	Cre17.g707100.t1.1		1496151,1496711,1496936,1497339,1497614,1498001,1499016,1499576,1500017,1500945,1501848,1502316,1502867,1503426,1504913,1505222	1496315,1496787,1497078,1497438,1497801,1498671,1499405,1499839,1500610,1501700,1502138,1502531,1503079,1504682,1504991,1505856	
chr17	1507360	1511990	1509896	1511657	-	Cre17.g707137.t1.2	Cre17.g707137.t1.2		1511645,1507360	1511990,1511546	
chr17	1513071	1516522	1513533	1516094	+	Cre17.g707150.t1.1	Cre17.g707150.t1.1		1513071,1513516,1514347	1513381,1513703,1516522	
chr17	1516571	1523650	1516787	1522701	+	LIC2	Cre17.g707200.t1.1		1516571,1517138,1517558,1517888,1518082,1518420,1518813,1519293,1519542,1519965,1520265,1520823,1522224,1522653	1517007,1517331,1517637,1517930,1518181,1518513,1519005,1519322,1519626,1520053,1520395,1522001,1522317,1523650	some similarity to neuromediator-gated ion channels (nicotinic acetylcholine-gated ion channel); belongs to a small family of three linked genes
chr17	1524313	1533170	1524585	1532788	-	MFT29	Cre17.g707250.t1.2		1532708,1532556,1532367,1531872,1531409,1530971,1530274,1529957,1529459,1528551,1526946,1526645,1526341,1525966,1525520,1525161,1524977,1524313	1533170,1532619,1532424,1532044,1531491,1531061,1530657,1530094,1529608,1529137,1528373,1526723,1526376,1526139,1525612,1525248,1525005,1524798	Permease
chr17	1533291	1536341	1533416	1535786	+	PGA3	Cre17.g707300.t1.2		1533291,1534209,1534800,1535232,1535579	1533826,1534419,1534963,1535400,1536341	
chr17	1536681	1538490	1536945	1537303	+	Cre17.g707350.t1.2	Cre17.g707350.t1.2		1536681	1538490	
chr17	1538831	1547423	1538909	1546306	+	Cre17.g707400.t1.2	Cre17.g707400.t1.2		1538831,1539107,1539396,1539732,1540132,1540503,1541449,1541965,1542368,1542751,1543759,1544167	1539023,1539220,1539502,1539837,1540311,1541267,1541627,1542142,1542484,1543320,1543842,1547423	
chr17	1549695	1550786	1549811	1550760	+	Cre17.g707450.t1.2	Cre17.g707450.t1.2		1549695	1550786	
chr17	1552755	1563566	1553264	1563171	+	Cre17.g707500.t1.2	Cre17.g707500.t1.2		1552755,1553164,1554060,1554460,1555086,1555642,1556074,1556732,1557577,1558791,1559289,1559795,1560142,1560565,1561292,1561712,1562282,1562598,1562807	1552970,1553798,1554149,1554697,1555350,1555826,1556186,1556905,1557711,1558913,1559441,1559887,1560246,1560746,1561421,1561864,1562377,1562707,1563566	
chr17	1563735	1578856	1564313	1577011	+	Cre17.g707551.t1.1	Cre17.g707551.t1.1		1563735,1564643,1565053,1565472,1568525,1568758,1569635,1570523,1572236,1572585,1572881,1576842	1564331,1564816,1565283,1568381,1568560,1569561,1570355,1571970,1572334,1572656,1576590,1578856	
chr17	1579670	1582660	1579769	1581897	+	Cre17.g707600.t1.2	Cre17.g707600.t1.2		1579670,1580046,1580414,1580955,1581727	1579830,1580091,1580624,1581450,1582660	
chr17	1579670	1583386	1579769	1581897	+	Cre17.g707600.t2.1	Cre17.g707600.t2.1		1579670,1580046,1580414,1580955,1581727	1579830,1580091,1580624,1581450,1583386	
chr17	1583469	1589997	1584676	1589274	-	Cre17.g707650.t1.1	Cre17.g707650.t1.1		1589633,1589151,1588650,1588244,1587892,1587431,1587108,1586651,1586300,1586009,1583469	1589997,1589349,1588850,1588324,1588008,1587543,1587192,1586935,1586407,1586110,1585768	
chr17	1590875	1595730	1590936	1595402	+	NRAMP1	Cre17.g707700.t1.2		1590875,1591421,1591787,1592339,1592616,1593011,1593358,1593710,1593999,1594383,1594737,1595076,1595278	1591257,1591522,1591834,1592425,1592670,1593114,1593472,1593785,1594153,1594501,1594880,1595167,1595730	Manganese transport protein mntH, natural resistance associated macrophage protein; related to yeast NRAMP ScSMF1-3, see PMID: 15710683
chr17	1595785	1599574	1595921	1598285	+	Cre17.g707750.t1.2	Cre17.g707750.t1.2		1595785,1596438,1596963,1597280,1597589,1598093	1595966,1596635,1597089,1597389,1597714,1599574	
chr17	1600215	1606429	1600736	1605745	+	Cre17.g707800.t1.2	Cre17.g707800.t1.2		1600215,1601273,1601609,1602373,1602717,1602928,1603364,1603721,1604175,1604486	1600992,1601370,1601775,1602590,1602793,1603154,1603457,1603897,1604277,1606429	
chr17	1609865	1611036	1609996	1610369	+	Cre17.g707850.t1.2	Cre17.g707850.t1.2		1609865	1611036	
chr17	1611045	1614109	1612054	1613971	-	Cre17.g707900.t1.2	Cre17.g707900.t1.2		1613852,1613698,1613022,1612731,1612295,1611045	1614109,1613758,1613462,1612844,1612542,1612139	
chr17	1614215	1618068	1614251	1617648	+	HEP2	Cre17.g707950.t1.2		1614215,1614707,1615038,1615481,1617648	1614486,1614850,1615159,1616382,1618068	Similar to Hsp70 escorting protein 1 (HEP1) from yeast mitochondria; HEP1 prevents aggregation of mitochondrial Hsp70s; HEP2 might be targeted to the chloroplast
chr17	1618738	1629764	1620120	1629537	-	FAP260	Cre17.g708000.t1.1		1629454,1629085,1628966,1628687,1628441,1628199,1627670,1627434,1627191,1626932,1626366,1625759,1625322,1625042,1624646,1624381,1623996,1622619,1622375,1621727,1621137,1620679,1618738	1629764,1629263,1628980,1628763,1628556,1628347,1627947,1627555,1627304,1627082,1626778,1626247,1625619,1625197,1624927,1624524,1624269,1623799,1622497,1622269,1621602,1620993,1620533	Flagellar Associated Protein with PAS sensory domain, found in the flagellar proteome
chr17	1629833	1631504	1630654	1630823	-	Cre17.g708013.t1.1	Cre17.g708013.t1.1		1629833	1631504	
chr17	1631665	1632715	1631803	1631996	+	Cre17.g708025.t1.1	Cre17.g708025.t1.1		1631665	1632715	
chr17	1632775	1636753	1634147	1635393	+	Cre17.g708038.t1.2	Cre17.g708038.t1.2		1632775,1633977,1634722,1635326	1633475,1634204,1634822,1636753	
chr17	1636878	1646004	1638297	1645606	-	Cre17.g708050.t1.1	Cre17.g708050.t1.1		1645357,1644904,1644146,1640799,1640518,1640057,1639731,1636878	1646004,1645185,1644670,1644045,1640591,1640185,1639866,1639400	
chr17	1647425	1649594	1648347	1649059	-	Cre17.g708076.t1.1	Cre17.g708076.t1.1		1649246,1647425	1649594,1649169	
chr17	1649669	1653913	1651587	1653835	-	Cre17.g708100.t1.2	Cre17.g708100.t1.2		1653680,1653474,1652958,1652695,1652232,1651883,1649669	1653913,1653519,1653089,1652745,1652384,1651952,1651667	
chr17	1654099	1655054	1654542	1654951	-	HTR26	Cre17.g708150.t1.2		1654099	1655054	Replication linked H3; histone gene cluster XXVI (type 43)
chr17	1655155	1655756	1655246	1655559	+	HFO26	Cre17.g708200.t1.2		1655155	1655756	Replication linked H4; histone gene cluster XXVI (type 43)
chr17	1655803	1658587	1656259	1658498	-	ARL8	Cre17.g708250.t1.2		1658405,1658177,1657873,1657631,1657458,1657060,1656531,1655803	1658587,1658257,1657885,1657681,1657507,1657152,1656617,1656361	Expressed Protein. Similar to the ARL8-type GTPases, involved in vesicle trafficking. Called ARLA" in Arabidopsis.
chr17	1655803	1658573	1656259	1658420	-	ARL8	Cre17.g708250.t2.1		1658405,1658177,1657873,1657631,1657458,1657060,1656531,1655803	1658573,1658257,1657885,1657681,1657507,1657152,1656617,1656361	Expressed Protein. Similar to the ARL8-type GTPases, involved in vesicle trafficking. Called ARLA" in Arabidopsis.
chr17	1658718	1661676	1658858	1661302	+	RPN12	Cre17.g708300.t1.2		1658718,1658984,1659168,1659457,1659767,1660134,1660393,1660775,1661161	1658900,1659040,1659246,1659559,1659884,1660205,1660466,1660886,1661676	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN12 (PSD8)
chr17	1661785	1664117	1661854	1663800	+	Cre17.g708350.t1.2	Cre17.g708350.t1.2		1661785,1662212,1662368,1662609,1663310,1663624	1662061,1662290,1662522,1662965,1663400,1664117	
chr17	1664129	1675594	1665011	1675192	-	SUB12	Cre17.g708400.t1.2		1673857,1673281,1672962,1672638,1672313,1671936,1671600,1671342,1670864,1670466,1669952,1669634,1669267,1668881,1668438,1668066,1667711,1667262,1666958,1666639,1666300,1665952,1665538,1664129	1675594,1673532,1673043,1672828,1672399,1672109,1671774,1671467,1671102,1670618,1670174,1669776,1669470,1669010,1668607,1668272,1667913,1667524,1667103,1666756,1666482,1666145,1665696,1665239	
chr17	1675745	1683067	1676139	1682383	+	MMP33	Cre17.g708450.t1.1		1675745,1676506,1676898,1677342,1677860,1678380,1678695,1679040,1679266,1679677,1680100,1680554,1681154,1681553,1681851,1682065	1676251,1676769,1677050,1677530,1677960,1678469,1678845,1679158,1679397,1679731,1680233,1680823,1681333,1681635,1681896,1683067	Matrix metalloproteinase belonging to the M11 peptidase family
chr17	1683315	1695436	1683557	1694619	+	Cre17.g708500.t1.1	Cre17.g708500.t1.1		1683315	1695436	
chr17	1695439	1696084	1695661	1696052	-	HTA27	Cre17.g708550.t1.2		1695439	1696084	replication linked H2A; histone gene cluster XXVII (type 34BA)
chr17	1696305	1697616	1696358	1696821	+	HTB27	Cre17.g708600.t1.2		1696305	1697616	replication linked H2B; histone gene cluster XXVII (type 34BA)
chr17	1697669	1698804	1698406	1698719	-	HFO27	Cre17.g708650.t1.2		1697669	1698804	replication linked H4; histone gene cluster XXVII (type 34BA)
chr17	1698925	1701425	1698997	1699406	+	HTR27	Cre17.g708700.t1.2		1698925	1701425	replication linked H3; histone gene cluster XXVII (type 34BA)
chr17	1701855	1705790	1702552	1704665	+	NSG1	Cre17.g708750.t1.2		1701855,1702944,1703249,1703455,1703690,1704091,1704510	1702676,1703096,1703318,1703502,1703825,1704349,1705790	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr17	1705799	1713584	1707155	1713506	-	GSH2	Cre17.g708800.t1.1		1713401,1713032,1712810,1712147,1711637,1710232,1709634,1709156,1708703,1708318,1707634,1705799	1713584,1713145,1712869,1712317,1711732,1710378,1709779,1709265,1708764,1708498,1707721,1707360	catalyzes the addition of glycine to gamma-glutamylcysteine, forming glutathione (GSH synthetase) [EC:6.3.2.3]; higher plant enzyme is predicted chloroplastic, but found in the cytosol (PMID: 16328783); ts-lethal mutant block at S/M (PMID 29743196)
chr17	1713695	1721596	1714123	1721379	+	Cre17.g708850.t1.1	Cre17.g708850.t1.1		1713695,1715644,1717000,1717388,1717986,1719116,1720170,1720634,1721219	1715476,1716785,1717250,1717797,1718720,1720030,1720400,1720977,1721596	
chr17	1725929	1730813	1726115	1730695	-	Cre17.g708901.t1.1	Cre17.g708901.t1.1		1730556,1729901,1729583,1728651,1728350,1727961,1727714,1726803,1726609,1725929	1730813,1730190,1729723,1729323,1728462,1728211,1727793,1727266,1726658,1726482	
chr17	1731018	1737893	1732634	1737548	-	Cre17.g708950.t1.1	Cre17.g708950.t1.1		1737774,1737454,1736730,1736411,1735597,1735372,1734958,1734718,1734086,1733893,1733471,1733204,1732990,1731018	1737893,1737550,1737007,1736551,1736281,1735484,1735208,1734797,1734498,1733942,1733796,1733352,1733085,1732691	
chr17	1738114	1760454	1738737	1759334	+	Cre17.g709000.t1.2	Cre17.g709000.t1.2		1738114,1739901,1740127,1742372,1743398,1743825,1744074,1744348,1744553,1744794,1745043,1745525,1748624,1749080,1749309,1749513,1749836,1750283,1750577,1750876,1751287,1751585,1751857,1752363,1752708,1752948,1753277,1753509,1753994,1754214,1754521,1754893,1755216,1755507,1757205,1757501,1757922,1758334,1758661,1758880,1759188	1738867,1740005,1742020,1743269,1743576,1743957,1744208,1744434,1744695,1744882,1745332,1748410,1748959,1749163,1749401,1749707,1750129,1750408,1750713,1751060,1751420,1751648,1752192,1752562,1752821,1753145,1753350,1753775,1754081,1754363,1754700,1754982,1755302,1756922,1757312,1757784,1758036,1758495,1758744,1758988,1760454	
chr17	1761858	1762963	1762409	1762818	-	HTR28	Cre17.g709050.t1.2		1761858	1762963	replication linked H3; histone gene cluster XXVIII (type 34BA)
chr17	1763064	1763555	1763101	1763414	+	HFO28	Cre17.g709100.t1.2		1763064	1763555	replication linked H4; histone gene cluster XXVIII (type 34BA)
chr17	1763954	1764793	1764276	1764739	-	HTB28	Cre17.g709150.t1.2		1763954	1764793	replication linked H2B; histone gene cluster XXVIII (type 34BA)
chr17	1765014	1765765	1765047	1765438	+	HTA28	Cre17.g709200.t1.2		1765014	1765765	replication linked H2A; histone gene cluster XXVIII (type 34BA)
chr17	1765824	1767979	1765875	1767251	+	Cre17.g709250.t1.1	Cre17.g709250.t1.1		1765824,1766217,1766443,1766740,1767119	1766147,1766331,1766560,1766825,1767979	
chr17	1767988	1773103	1768490	1773036	-	Cre17.g709300.t1.1	Cre17.g709300.t1.1		1772784,1772381,1771980,1771546,1771352,1771060,1770649,1770348,1769757,1769252,1768939,1767988	1773103,1772506,1772006,1771665,1771396,1771173,1770804,1770424,1769942,1769422,1769053,1768550	
chr17	1773158	1775843	1774021	1775737	-	SYP5	Cre17.g709350.t1.2		1775727,1775603,1775332,1774986,1774637,1773158	1775843,1775664,1775489,1775090,1774805,1774249	
chr17	1775944	1785679	1776013	1785025	+	Cre17.g709400.t1.1	Cre17.g709400.t1.1		1775944,1777122,1777981,1778436,1779006,1779457,1779825,1780330,1781035,1781487,1783034,1783557,1783864,1784249,1784575,1784955	1776739,1777633,1778146,1778558,1779095,1779523,1780132,1780800,1781316,1782773,1783233,1783601,1784053,1784311,1784681,1785679	
chr17	1786618	1788243	1787491	1787982	-	Cre17.g709450.t1.2	Cre17.g709450.t1.2		1787865,1787678,1786618	1788243,1787744,1787550	
chr17	1790415	1798683	1792633	1798398	-	Cre17.g709500.t1.1	Cre17.g709500.t1.1		1798368,1797707,1797401,1797090,1796562,1796158,1795842,1795378,1792999,1790415	1798683,1797739,1797550,1797217,1796738,1796285,1795947,1795539,1795143,1792811	
chr17	1799698	1807653	1800744	1805999	-	Cre17.g709550.t1.2	Cre17.g709550.t1.2		1807194,1805870,1805035,1804404,1803736,1803277,1802939,1802706,1799698	1807653,1806292,1805136,1804643,1803958,1803440,1803086,1802779,1802499	
chr17	1808124	1813285	1808920	1812434	+	Cre17.g709600.t1.1	Cre17.g709600.t1.1		1808124,1809981,1810555,1811279,1811620,1812110	1809798,1810244,1810950,1811391,1811876,1813285	
chr17	1813298	1816463	1814055	1816255	-	Cre17.g709651.t1.1	Cre17.g709651.t1.1		1815420,1814625,1814180,1813298	1816463,1815245,1814437,1814055	
chr17	1816694	1821539	1817062	1820643	+	Cre17.g709700.t1.2	Cre17.g709700.t1.2		1816694,1817392,1817884,1818292,1818605,1818925,1819236,1819948,1820399	1817104,1817539,1817990,1818342,1818681,1819024,1819733,1820162,1821539	
chr17	1821974	1831590	1822791	1828819	+	Cre17.g709750.t1.1	Cre17.g709750.t1.1		1821974,1822789,1823051,1823364,1823659,1824168,1826851	1822450,1822882,1823196,1823431,1823816,1826692,1831590	
chr17	1832921	1838843	1834310	1837965	-	RLS1	Cre17.g709800.t1.2		1838475,1837026,1835722,1832921	1838843,1838013,1836825,1835642	closest homolog to the Volvox carteri RegA and RlsA genes; contains a SAND domain; RegA is a transcriptional repressor, responsible for maintenance of terminal differentiation in somatic cells (PMID: 16622701)
chr17	1839904	1846335	1840151	1845405	+	ACK2	Cre17.g709850.t1.2		1839904,1840785,1841103,1841358,1842274,1842715,1842979,1843308,1843501,1843985,1844393,1844798,1845369	1840379,1840849,1841139,1841480,1842421,1842765,1843054,1843389,1843531,1844133,1844470,1844938,1846335	E.C.2.7.2.1
chr17	1847148	1848093	1847632	1848069	-	Cre17.g709876.t1.1	Cre17.g709876.t1.1		1847987,1847148	1848093,1847760	
chr17	1848194	1861525	1848240	1859001	+	Cre17.g709900.t1.1	Cre17.g709900.t1.1		1848194,1848756,1849183,1849648,1851329,1851813,1852189,1853290,1854716,1855227,1855524,1855989,1856204,1856607,1856951,1857284,1857576,1857797,1858089,1858496	1848254,1848818,1849426,1851101,1851590,1851956,1853094,1854490,1854950,1855276,1855768,1856051,1856347,1856732,1857081,1857365,1857630,1857861,1858180,1861525	
chr17	1848194	1861525	1848240	1859001	+	Cre17.g709900.t2.1	Cre17.g709900.t2.1		1848194,1848756,1849183,1849651,1851329,1851813,1852189,1853290,1854716,1855227,1855524,1855989,1856204,1856607,1856951,1857284,1857576,1857797,1858089,1858496	1848254,1848818,1849426,1851101,1851590,1851956,1853094,1854490,1854950,1855276,1855768,1856051,1856347,1856732,1857081,1857365,1857630,1857861,1858180,1861525	
chr17	1862084	1866952	1862257	1866034	+	Cre17.g709950.t1.2	Cre17.g709950.t1.2		1862084,1862775,1863242,1863645,1864232,1864961,1865396,1865852	1862682,1862849,1863335,1863704,1864297,1865104,1865498,1866952	
chr17	1867179	1878273	1869532	1878155	-	Cre17.g710000.t1.1	Cre17.g710000.t1.1		1878032,1877652,1877273,1876644,1875874,1875331,1874608,1872560,1872370,1871908,1871441,1871158,1870835,1870512,1870091,1867179	1878273,1877788,1877486,1877075,1876448,1875688,1875165,1874457,1872419,1872152,1871554,1871250,1870948,1870642,1870363,1869830	
chr17	1878928	1886113	1879420	1885823	-	Cre17.g710050.t1.1	Cre17.g710050.t1.1		1885792,1885211,1884856,1884630,1884449,1884265,1883997,1883758,1883552,1881350,1880829,1880514,1880043,1879732,1878928	1886113,1885287,1884915,1884667,1884488,1884342,1884078,1883807,1883602,1883339,1881214,1880639,1880255,1879854,1879591	
chr17	1886214	1890236	1886277	1889877	+	Cre17.g710100.t1.1	Cre17.g710100.t1.1		1886214,1886592,1886875,1887144,1887370,1887819,1888035,1888294,1888703,1889154,1889727	1886355,1886655,1886963,1887220,1887479,1887895,1888088,1888450,1888926,1889450,1890236	
chr17	1890614	1895663	1890857	1895277	+	RPT4	Cre17.g710150.t1.2		1890614,1891472,1891844,1892274,1892685,1892905,1893225,1893564,1893919,1894387,1894707,1895193	1891071,1891524,1891927,1892460,1892746,1892972,1893267,1893703,1894002,1894468,1894805,1895663	26S proteasome regulatory complex, base subcomplex, ATPase RPT4
chr17	1895808	1902183	1896281	1902051	-	IAD1	Cre17.g710200.t1.1		1901800,1901327,1900506,1900168,1899885,1899434,1899166,1897450,1896861,1895808	1902183,1901645,1900694,1900281,1899966,1899516,1899204,1897524,1897073,1896446	contains WD4 repeats
chr17	1895808	1902179	1896281	1902058	-	IAD1	Cre17.g710200.t2.1		1901846,1901327,1900506,1900168,1899885,1899434,1899166,1897450,1896861,1895808	1902179,1901645,1900694,1900281,1899966,1899516,1899204,1897524,1897073,1896446	contains WD4 repeats
chr17	1902740	1905125	1904215	1904530	-	Cre17.g710254.t1.2	Cre17.g710254.t1.2		1904346,1902740	1905125,1904280	
chr17	1905236	1908962	1905567	1908274	+	PHC31	Cre17.g710300.t1.1		1905236,1905655,1905943,1908228	1905590,1905774,1908045,1908962	
chr17	1909506	1916897	1909823	1916577	+	Cre17.g710351.t1.1	Cre17.g710351.t1.1		1909506,1911473,1912058,1912882,1913185,1913815,1914218,1914498,1914815,1915151,1916145,1916478	1911291,1911560,1912630,1912987,1913273,1914019,1914307,1914620,1914942,1915886,1916255,1916897	
chr17	1916910	1917345	1916927	1917318	-	HTA29	Cre17.g710400.t1.2		1916910	1917345	replication linked H2A; histone gene cluster XXIX (type 43BA)
chr17	1917446	1918927	1917627	1918090	+	HTB29	Cre17.g710450.t1.2		1917446	1918927	replication linked H2B; histone gene cluster XXIX (type 43BA)
chr17	1918960	1919415	1919011	1919324	-	HTR29	Cre17.g710500.t1.2		1918960	1919415	Replication linked H3; histone gene cluster XXIX (type 43BA)
chr17	1919526	1920364	1919597	1920006	+	HFO29	Cre17.g710550.t1.2		1919526	1920364	Replication linked H4; histone gene cluster XXIX (type 43BA)
chr17	1920412	1931145	1920893	1930894	-	Cre17.g710600.t1.2	Cre17.g710600.t1.2		1930360,1929190,1928902,1928523,1928300,1927987,1927371,1926970,1926512,1926241,1924866,1923719,1923519,1922991,1922609,1922131,1920412	1931145,1929972,1928979,1928648,1928373,1928075,1927823,1927186,1926846,1926308,1926045,1924668,1923578,1923335,1922768,1922451,1921921	
chr17	1931296	1940277	1931467	1939762	+	PTK21	Cre17.g710650.t1.1		1931296,1932928,1934543,1934886,1935682,1936090,1936493,1936810,1937135,1937645,1937984,1938510,1938840,1939708	1932538,1933584,1934620,1935517,1935926,1936214,1936600,1936959,1937311,1937704,1938313,1938600,1939018,1940277	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr17	1940336	1946287	1940743	1944970	+	Cre17.g710700.t1.2	Cre17.g710700.t1.2		1940336,1941850,1942673,1944370,1944902	1940818,1942377,1944185,1944669,1946287	
chr17	1940336	1946017	1940743	1944970	+	Cre17.g710700.t2.1	Cre17.g710700.t2.1		1940336,1941850,1942673,1944370,1944902	1940818,1942377,1944185,1944669,1946017	
chr17	1946216	1951912	1946673	1950002	+	Cre17.g710750.t1.1	Cre17.g710750.t1.1		1946216,1946624,1947190,1949847	1946272,1946784,1949566,1951912	
chr17	1946376	1951912	1946673	1950002	+	Cre17.g710750.t2.1	Cre17.g710750.t2.1		1946376,1947190,1949847	1946784,1949566,1951912	
chr17	1951950	1957625	1953003	1957512	-	NFU3	Cre17.g710800.t1.2		1957275,1956676,1956275,1955817,1955420,1954915,1954580,1954221,1953779,1951950	1957625,1956825,1956409,1955978,1955502,1955200,1954660,1954304,1953927,1953100	pfam01106, NifU-like domain; contains a C-terminal NifU domain (involved in biogenesis of FeS clusters)
chr17	1951950	1957625	1953357	1957512	-	NFU3	Cre17.g710800.t2.1		1957275,1956676,1956275,1955817,1955420,1954915,1954580,1954221,1953779,1951950	1957625,1956825,1956409,1955978,1955502,1955200,1954660,1954304,1953927,1953445	pfam01106, NifU-like domain; contains a C-terminal NifU domain (involved in biogenesis of FeS clusters)
chr17	1957726	1961977	1958071	1961134	+	Cre17.g710850.t1.2	Cre17.g710850.t1.2		1957726,1958441,1958876,1959375,1959952,1960510	1958144,1958568,1958983,1959512,1960089,1961977	
chr17	1962035	1963645	1962930	1963174	-	Cre17.g710871.t1.2	Cre17.g710871.t1.2		1963418,1962035	1963645,1963309	
chr17	1964056	1965167	1964100	1964543	+	Cre17.g710879.t1.2	Cre17.g710879.t1.2		1964056,1964276	1964187,1965167	
chr17	1965216	1967184	1965357	1966294	+	Cre17.g710881.t1.2	Cre17.g710881.t1.2		1965216,1965600,1966141,1966294	1965529,1966031,1966177,1967184	
chr17	1967530	1970065	1968165	1969376	-	Cre17.g710900.t1.2	Cre17.g710900.t1.2		1969264,1968929,1967530	1970065,1968987,1968756	
chr17	1972126	1973489	1972211	1972660	+	Cre17.g710950.t1.2	Cre17.g710950.t1.2		1972126,1972562	1972491,1973489	
chr17	1974300	1977625	1975344	1977483	-	Cre17.g711000.t1.1	Cre17.g711000.t1.1		1977081,1976536,1976201,1974300	1977625,1976923,1976259,1975935	
chr17	1977937	1982745	1978947	1982678	-	Cre17.g711050.t1.1	Cre17.g711050.t1.1		1982530,1981812,1981472,1981133,1980419,1980105,1979781,1979321,1977937	1982745,1981915,1981528,1981212,1980501,1980211,1979870,1979527,1979043	
chr17	1982886	1990287	1983398	1989276	+	Cre17.g711100.t1.1	Cre17.g711100.t1.1		1982886,1985712,1986061	1985438,1985817,1990287	
chr17	1990390	1994722	1990556	1994123	+	FAD2	Cre17.g711150.t1.2		1990390,1990963,1991317,1991799,1992143,1992606,1992965,1993387,1993809,1993994	1990727,1991033,1991493,1991889,1992255,1992669,1993084,1993525,1993885,1994722	Oleate/fatty acid desaturase, delta-12.  Also known as FAD2a
chr17	1994846	1998982	1994972	1998215	+	Cre17.g711200.t1.2	Cre17.g711200.t1.2		1994846,1995405,1995989,1996356,1996734,1997074,1997514,1997797,1998108	1995030,1995609,1996085,1996421,1996778,1997196,1997601,1997910,1998982	
chr17	1999036	2002827	1999079	2002096	+	MIP2	Cre17.g711250.t1.2		1999036,1999595,1999999,2000462,2000725,2001087,2001502,2001917	1999145,1999694,2000111,2000494,2000848,2001176,2001675,2002827	related to plant tonoplast TIP and aquaporins, major intrinsic protein
chr17	2002886	2006598	2003044	2005346	+	Cre17.g711300.t1.2	Cre17.g711300.t1.2		2002886,2003355,2004048,2004705,2005177	2003184,2003745,2004388,2004923,2006598	
chr17	2007586	2012167	2008017	2011899	+	Cre17.g711350.t1.2	Cre17.g711350.t1.2		2007586,2008505,2008723,2009235,2009513,2010022,2010473,2010770	2008399,2008591,2009000,2009366,2009854,2010335,2010601,2012167	
chr17	2016916	2022157	2018374	2021681	+	Cre17.g711401.t1.1	Cre17.g711401.t1.1		2016916,2018119,2018325,2019488,2020703,2021204	2017671,2018159,2018435,2020458,2020843,2022157	
chr17	2022160	2025245	2022517	2025192	-	SYP8	Cre17.g711450.t1.1		2025123,2024958,2024831,2024363,2023743,2023301,2023077,2022878,2022160	2025245,2025053,2024897,2024574,2023949,2023564,2023124,2022931,2022694	Involved in Endoplasmic Reticulum trafficking; belongs to Syntaxin18/Syx18/Ufe1/Syp8 family (Qa.I)
chr17	2025306	2032685	2025622	2032483	-	Cre17.g711457.t1.2	Cre17.g711457.t1.2		2032186,2031419,2030948,2030620,2029983,2029418,2028742,2028408,2027950,2027634,2027104,2025306	2032685,2031952,2031097,2030706,2030188,2029818,2029102,2028504,2028100,2027689,2027329,2026704	
chr17	2032740	2034435	2034044	2034369	-	Cre17.g711480.t1.1	Cre17.g711480.t1.1		2032740	2034435	
chr17	2038080	2040905	2040559	2040874	-	Cre17.g711503.t1.1	Cre17.g711503.t1.1		2040793,2038080	2040905,2040694	
chr17	2041476	2043647	2041790	2043034	+	Cre17.g711526.t1.1	Cre17.g711526.t1.1		2041476,2041913,2042043,2042719	2041823,2041960,2042240,2043647	
chr17	2045316	2050715	2045677	2048053	+	CYCR2	Cre17.g711550.t1.1		2045316,2046077,2046654	2045875,2046174,2050715	
chr17	2050746	2052965	2051244	2052044	-	Cre17.g711600.t1.2	Cre17.g711600.t1.2		2052565,2052312,2051502,2050746	2052965,2052369,2052061,2051244	
chr17	2053100	2057475	2054124	2057439	-	NUDC1	Cre17.g711650.t1.2		2057238,2057036,2056806,2056447,2056043,2055602,2054831,2053100	2057475,2057110,2056848,2056650,2056140,2055742,2054977,2054247	Nuclear movement family protein ortholog to NudC protein from Aspergillus
chr17	2057570	2058645	2058181	2058572	-	HTA30	Cre17.g711700.t1.2		2057570	2058645	replication linked H2A; histone gene cluster XXX (type 34BA); mapped to LG XIX [PMID: 7479007]
chr17	2058836	2061017	2058881	2059344	+	HTB30	Cre17.g711750.t1.2		2058836	2061017	replication linked H2B; histone gene cluster XXX (type 34BA); mapped to LG XIX - Walther & Hall (NAR 23:3756-3763; 1995)
chr17	2061090	2061515	2061110	2061423	-	HFO30	Cre17.g711800.t1.2		2061090	2061515	Replication linked H4; histone gene cluster XXX (type 34BA)
chr17	2061616	2062297	2061709	2062118	+	HTR30	Cre17.g711850.t1.2		2061616	2062297	replication linked H3; histone gene cluster XXX (type 34BA); mapped to LG XIX - Walther & Hall (NAR 23:3756-3763; 1995)
chr17	2062610	2068065	2063020	2067691	-	Cre17.g711900.t1.1	Cre17.g711900.t1.1		2067178,2066744,2066283,2065825,2065351,2064839,2064542,2064092,2063761,2062610	2068065,2066840,2066406,2066004,2065509,2064926,2064631,2064210,2063922,2063591	
chr17	2068178	2069315	2068353	2069288	-	PFP1	Cre17.g711950.t2.1		2069134,2068862,2068178	2069315,2068905,2068629	
chr17	2067992	2069315	2068353	2069288	-	PFP1	Cre17.g711950.t1.2		2069134,2068862,2067992	2069315,2068905,2068629	
chr17	2069456	2072150	2069567	2071607	+	SRS11	Cre17.g712000.t1.1		2069456,2069681,2069871,2070712,2070939,2071462	2069586,2069776,2069876,2070782,2071276,2072150	Putative SR (serine/arginine rich) protein involved in mRNA splicing; contains RNA-binding region RNP-1 (RNA recognition motif; RRM). Belongs to human SC35 protein family
chr17	2072217	2075306	2072344	2074978	-	Cre17.g712050.t1.1	Cre17.g712050.t1.1		2074817,2074316,2073808,2073522,2073207,2072217	2075306,2074625,2073866,2073597,2073277,2072960	
chr17	2075466	2080872	2075593	2080467	+	MDAR1	Cre17.g712100.t1.2		2075466,2076124,2076564,2076955,2077340,2077668,2078062,2078482,2078851,2079172,2079459,2079657,2079964,2080279	2075759,2076204,2076685,2077026,2077393,2077796,2078154,2078587,2078905,2079276,2079493,2079736,2080015,2080872	
chr17	2081316	2081837	2081356	2081573	+	Cre17.g712126.t1.1	Cre17.g712126.t1.1		2081316	2081837	
chr17	2083752	2085645	2084326	2084717	-	Cre17.g712150.t1.2	Cre17.g712150.t1.2		2085291,2083752	2085645,2084784	
chr17	2085776	2094717	2086124	2093963	+	Cre17.g712200.t2.1	Cre17.g712200.t2.1		2085776,2086048,2086321,2086695,2086950,2087336,2087735,2088215,2088416,2089003,2089342,2089634,2092523,2092912,2093702	2085940,2086161,2086508,2086772,2087098,2087501,2087917,2088238,2088853,2089108,2089504,2092199,2092720,2093241,2094717	
chr17	2085556	2094717	2086124	2093963	+	Cre17.g712200.t1.1	Cre17.g712200.t1.1		2085556,2085881,2086048,2086321,2086695,2086950,2087336,2087735,2088215,2088416,2089003,2089342,2089634,2092523,2092912,2093702	2085691,2085940,2086161,2086508,2086772,2087098,2087501,2087917,2088238,2088853,2089108,2089504,2092199,2092720,2093241,2094717	
chr17	2094723	2100195	2095879	2098790	-	Cre17.g712250.t1.1	Cre17.g712250.t1.1		2099977,2099027,2098510,2097486,2097192,2096878,2094723	2100195,2099068,2098908,2098330,2097290,2096973,2096560	
chr17	2102544	2109417	2102712	2108837	+	Cre17.g712300.t1.1	Cre17.g712300.t1.1		2102544,2103318,2103880,2104401,2104687,2105340,2105872,2106359,2107039,2107437,2108180,2108525	2103058,2103648,2103985,2104443,2104922,2105484,2106137,2106724,2107171,2108000,2108319,2109417	
chr17	2109696	2112807	2110772	2111445	+	CPLD6	Cre17.g712350.t1.1		2109696,2110197,2110770	2110081,2110241,2112807	Conserved in the Plant Lineage and Diatoms
chr17	2112946	2115773	2113202	2114283	+	Cre17.g712400.t1.2	Cre17.g712400.t1.2		2112946	2115773	
chr17	2115810	2122695	2116541	2122674	-	Cre17.g712450.t1.1	Cre17.g712450.t1.1		2122470,2122242,2121989,2121574,2121282,2121077,2118006,2117660,2117286,2115810	2122695,2122324,2122038,2121647,2121359,2121134,2120830,2117731,2117370,2117032	
chr17	2122750	2126225	2123268	2125991	-	Cre17.g712500.t1.1	Cre17.g712500.t1.1		2125988,2125781,2122750	2126225,2125897,2125671	
chr17	2126806	2129557	2126872	2127287	+	Cre17.g712550.t1.2	Cre17.g712550.t1.2		2126806	2129557	
chr17	2129658	2135845	2130838	2135482	-	Cre17.g712600.t1.2	Cre17.g712600.t1.2		2135106,2134574,2134170,2133701,2132610,2129658	2135845,2134922,2134371,2133935,2132994,2131487	
chr17	2139636	2142537	2139954	2141436	+	Cre17.g712700.t1.1	Cre17.g712700.t1.1		2139636,2140785	2139972,2142537	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr17	2142586	2145065	2143283	2144266	+	Cre17.g712742.t1.2	Cre17.g712742.t1.2		2142586,2143710,2144266	2143634,2144122,2145065	
chr17	2145080	2147705	2145097	2147244	-	Cre17.g712771.t1.1	Cre17.g712771.t1.1		2147228,2145860,2145246,2145080	2147705,2146344,2145600,2145129	
chr17	2150260	2152205	2150373	2152148	-	Cre17.g712800.t1.1	Cre17.g712800.t1.1		2150686,2150260	2152205,2150390	
chr17	2152270	2155795	2152922	2155619	-	TRX23	Cre17.g712850.t1.1		2155487,2155058,2154436,2153968,2153397,2152270	2155795,2155071,2154517,2154087,2153497,2153112	
chr17	2155929	2159067	2156714	2158347	+	Cre17.g712900.t1.1	Cre17.g712900.t1.1		2155929,2156635,2157045,2157454,2157752,2158216	2156143,2156882,2157159,2157593,2157803,2159067	
chr17	2159140	2169465	2160762	2169374	-	Cre17.g712950.t1.1	Cre17.g712950.t1.1		2169336,2169120,2168801,2168625,2168363,2166498,2163531,2162235,2161755,2161444,2159140	2169465,2169249,2168934,2168726,2168402,2168129,2166239,2163320,2161973,2161545,2161203	
chr17	2169596	2173217	2169723	2172614	+	Cre17.g713000.t1.2	Cre17.g713000.t1.2		2169596,2169922,2170386,2170930,2171256,2171711,2172440	2169751,2170054,2170711,2171060,2171527,2172152,2173217	
chr17	2173220	2180685	2173763	2180485	-	DNJ33	Cre17.g713025.t1.1		2180164,2179780,2179232,2178552,2178185,2177784,2177035,2176227,2175945,2175665,2175342,2175083,2174812,2174388,2173220	2180685,2179857,2179331,2178835,2178268,2178030,2177585,2176816,2175989,2175758,2175416,2175148,2174874,2174447,2174042	
chr17	2173220	2180685	2173763	2180485	-	DNJ33	Cre17.g713025.t2.1		2180164,2179780,2179232,2178552,2178185,2177784,2177035,2176227,2175945,2175665,2175342,2175083,2174812,2174388,2173220	2180685,2179857,2179331,2178835,2178268,2178027,2177585,2176816,2175989,2175758,2175416,2175148,2174874,2174447,2174042	
chr17	2181000	2184785	2181591	2184711	-	Cre17.g713051.t1.1	Cre17.g713051.t1.1		2184557,2184340,2183973,2183699,2182935,2182599,2182299,2182069,2181000	2184785,2184440,2184008,2183758,2183209,2182692,2182370,2182086,2181852	
chr17	2184840	2188155	2185329	2187938	-	Cre17.g713100.t1.2	Cre17.g713100.t1.2		2187838,2187387,2186528,2186084,2185690,2184840	2188155,2187531,2186649,2186205,2185737,2185476	
chr17	2188239	2193755	2189633	2193647	-	Cre17.g713150.t1.1	Cre17.g713150.t1.1		2193580,2193154,2192649,2192034,2191751,2190832,2190419,2190139,2188239	2193755,2193359,2192732,2192152,2191832,2191497,2190604,2190188,2189922	
chr17	2188239	2193665	2189633	2193418	-	Cre17.g713150.t2.1	Cre17.g713150.t2.1		2193154,2192649,2192034,2191751,2190832,2190419,2190139,2188239	2193665,2192732,2192152,2191832,2191497,2190604,2190188,2189922	
chr17	2197416	2202925	2197984	2201569	-	OMT2	Cre17.g713200.t1.1		2202375,2201301,2201044,2200514,2199911,2199568,2199278,2198873,2198432,2197416	2202925,2202082,2201173,2200802,2200093,2199655,2199372,2199046,2198665,2198083	Chloroplast-located transporter, homologous to AtOMT1 [PMID:7873543]; participates probably in the export of glutamate (and aspartate), by exchanging stromal malate for cytosolic 2-oxoglutarate (oxaloacetate); linked to closely related OMT1; highest similarity to oxoglutarate/malate translocator (PMID: 7873543) and to di- and tri-carboxylate translocators, but also has similarity to a Na+/SO4-- translocator domain; could be a dicistronic mRNA: an upstream ORF starting at first AUG would stop 54 nt before the AUG of OMT2, possibly allowing reinitiation; this gene is a target of a miRNA complex that targets cleavage within the uROF (PMID: 17470535)
chr17	2203017	2204329	2203480	2203757	+	Cre17.g713260.t1.2	Cre17.g713260.t1.2		2203017,2203439	2203146,2204329	
chr17	2210727	2212278	2211861	2212147	+	Cre17.g713305.t1.1	Cre17.g713305.t1.1		2210727,2211717,2211941	2211512,2211880,2212278	
chr17	2215518	2220046	2216081	2219806	-	OMT1	Cre17.g713350.t1.2		2219436,2219179,2218649,2218046,2217705,2217416,2216998,2216533,2215518	2220046,2219308,2218937,2218228,2217792,2217510,2217171,2216766,2216180	Chloroplast-located transporter, homologous to AtOMT1 [PMID:7873543]; participates probably in the export of glutamate (and aspartate), by exchanging stromal malate for cytosolic 2-oxoglutarate (oxaloacetate); linked to related OMT2
chr17	2223906	2224716	2224269	2224660	-	HTA31	Cre17.g713400.t1.2		2223906	2224716	replication linked H2A; histone gene cluster XXXI (type 34BA)
chr17	2224917	2226104	2224968	2225431	+	HTB31	Cre17.g713450.t1.2		2224917	2226104	replication linked H2B; histone gene cluster XXXI (type 34BA)
chr17	2226111	2226916	2226522	2226835	-	HFO31	Cre17.g713500.t1.2		2226111	2226916	replication linked H4; histone gene cluster XXXI (type 34BA)
chr17	2227017	2227868	2227121	2227530	+	HTR31	Cre17.g713550.t1.2		2227017	2227868	replication linked H3; histone gene cluster XXXI (type 34BA)
chr17	2227941	2229866	2228266	2229717	-	Cre17.g713575.t1.1	Cre17.g713575.t1.1		2229679,2227941	2229866,2228672	
chr17	2238711	2252829	2239200	2252348	-	SUB13	Cre17.g713600.t1.1		2252570,2251808,2251037,2250417,2249799,2249496,2249097,2248709,2248260,2247786,2247150,2246837,2246421,2246111,2245249,2244900,2244621,2244128,2243785,2243458,2243192,2242787,2242104,2241608,2241266,2240613,2240001,2239592,2238711	2252829,2252402,2251522,2250566,2249994,2249590,2249345,2248939,2248499,2248008,2247403,2246944,2246517,2246239,2245330,2245027,2244676,2244442,2243911,2243555,2243263,2243018,2242414,2241809,2241390,2241063,2240281,2239840,2239422	
chr17	2253477	2263828	2253863	2263676	+	MSH5	Cre17.g713650.t1.1		2253477,2255237,2255530,2255919,2256327,2256860,2257824,2258137,2258461,2258828,2259287,2259579,2259924,2260236,2260401,2260904,2261332,2261813,2262334,2263300,2263574	2254979,2255287,2255793,2256071,2256532,2257001,2257892,2258205,2258541,2259028,2259328,2259671,2260010,2260275,2260636,2261102,2261424,2262129,2262945,2263404,2263828	Forms a complex with MutL (see MLH genes)
chr17	2263967	2273021	2264152	2271631	+	Cre17.g713674.t1.2	Cre17.g713674.t1.2		2263967,2264615,2265481,2265978,2266295,2267495,2269404,2269808,2270648,2271081,2271349	2264281,2264749,2265669,2266052,2267269,2269279,2269564,2270512,2270855,2271209,2273021	
chr17	2273077	2277568	2273280	2276938	+	IAD2	Cre17.g713700.t1.1		2273077,2273559,2274066,2274311,2274650,2274936,2275171,2275596,2275934,2276461	2273447,2273832,2274206,2274444,2274704,2275049,2275252,2275795,2276221,2277568	
chr17	2277601	2278416	2277726	2278383	-	Cre17.g713726.t1.1	Cre17.g713726.t1.1		2278314,2277840,2277601	2278416,2278000,2277763	
chr17	2278537	2282802	2278659	2281650	+	Cre17.g713750.t1.2	Cre17.g713750.t1.2		2278537,2279158,2279883,2280411,2281186	2278833,2279613,2280260,2280960,2282802	Serine/Threonine Protein Kinase Homolog 16
chr17	2282942	2285516	2283133	2284737	-	Cre17.g713800.t1.2	Cre17.g713800.t1.2		2284588,2284323,2283899,2283603,2282942	2285516,2284404,2284074,2283707,2283431	
chr17	2285571	2289963	2286566	2289855	-	SAT2	Cre17.g713850.t1.1		2289734,2289432,2288598,2288212,2287829,2287597,2287338,2285571	2289963,2289633,2288742,2288321,2287931,2287653,2287415,2287193	serine O-acetyl transferase (EC 2.3.1.30); plastid targeting weakly predicted by Target-P; involved in cysteine and methionine biosynthesis
chr17	2290057	2293976	2290221	2293362	+	LST8	Cre17.g713900.t1.2		2290057,2290810,2291406,2291769,2292751,2293117	2290507,2290932,2291488,2291856,2292873,2293976	WD-40 containing protein, homolog of LST8, GbetaL; conserved TOR kinase binding partner in complexes TORC1 and TORC2
chr17	2294801	2295586	2295066	2295475	-	HTR32	Cre17.g713950.t1.2		2294801	2295586	replication linked H3; histone gene cluster XXXII (type 34BA)
chr17	2295687	2297258	2295761	2296074	+	HFO32	Cre17.g714000.t1.2		2295687	2297258	replication linked H4; histone gene cluster XXXII (type 34BA)
chr17	2297541	2298696	2298199	2298662	-	HTB32	Cre17.g714050.t1.2		2297541	2298696	replication linked H2B; histone gene cluster XXXII (type 34BA)
chr17	2298897	2299378	2298966	2299357	+	HTA32	Cre17.g714100.t1.2		2298897	2299378	replication linked H2A; histone gene cluster XXXII (type 34BA)
chr17	2299381	2307236	2299853	2307136	-	KUP1	Cre17.g714150.t1.1		2307064,2306852,2306499,2305783,2305469,2305063,2304701,2304349,2304064,2303632,2303268,2302080,2301632,2301354,2300271,2299381	2307236,2306974,2306601,2306253,2305590,2305162,2304843,2304464,2304157,2303763,2303447,2302997,2301745,2301413,2301141,2300035	linked to related KUP2 and KUP3
chr17	2307311	2316146	2309125	2316099	-	KUP2	Cre17.g714200.t1.1		2316027,2315815,2315447,2314759,2314428,2314127,2313764,2313422,2313136,2312760,2312366,2311218,2310797,2310528,2309455,2307311	2316146,2315937,2315549,2315229,2314549,2314226,2313906,2313537,2313229,2312891,2312545,2312126,2310910,2310587,2310328,2309307	linked to related KUP2 and KUP3
chr17	2316201	2322566	2316505	2322539	-	Cre17.g714229.t1.2	Cre17.g714229.t1.2		2322137,2321895,2321224,2320822,2320351,2319828,2319344,2319011,2318503,2318058,2317703,2317352,2316201	2322566,2321901,2321714,2320945,2320651,2320128,2319505,2319058,2318712,2318147,2317843,2317486,2317114	
chr17	2322689	2324358	2322804	2323783	+	DLX2	Cre17.g714250.t1.2		2322689,2323075,2323426,2323645	2322880,2323178,2323497,2324358	LC5 component of outer arm dynein; thioredoxin homolog [PMID: 862642]
chr17	2324361	2326816	2324596	2326748	-	Cre17.g714300.t1.2	Cre17.g714300.t1.2		2326561,2326095,2324361	2326816,2326411,2325901	
chr17	2326881	2331276	2328045	2331244	-	Cre17.g714350.t1.1	Cre17.g714350.t1.1		2331174,2330503,2330326,2330252,2329982,2328754,2328327,2326881	2331276,2330954,2330349,2330275,2330088,2329733,2328490,2328132	
chr17	2331387	2337708	2331545	2336618	+	Cre17.g714400.t1.1	Cre17.g714400.t1.1		2331387,2331833,2332037,2332249,2332530,2332845,2333390,2333732,2334213,2334476,2334897,2335241,2335470,2335822,2336084,2336489	2331653,2331868,2332072,2332354,2332621,2333102,2333552,2334029,2334284,2334626,2335103,2335337,2335578,2335909,2336152,2337708	
chr17	2338007	2345768	2338266	2345296	+	KUP3	Cre17.g714450.t1.2		2338007,2338432,2338811,2339113,2339777,2340078,2340387,2340751,2341048,2341477,2341864,2342292,2343526,2343839,2344106,2345114	2338341,2338554,2338913,2339577,2339898,2340177,2340529,2340866,2341141,2341608,2342043,2343203,2343639,2343898,2344973,2345768	Linked to closely related KUP1 and KUP2
chr17	2345771	2346256	2345789	2346180	-	HTA33	Cre17.g714500.t1.2		2345771	2346256	replication linked H2A; histone gene cluster XXXIII (type 34BA)
chr17	2346437	2347848	2346482	2346945	+	HTB33	Cre17.g714550.t1.2		2346437	2347848	replication linked H2B; histone gene cluster XXXIII (type 34BA)
chr17	2347891	2348326	2347935	2348248	-	HFO33	Cre17.g714600.t1.2		2347891	2348326	replication linked H4; histone gene cluster XXXIII (type 34BA)
chr17	2348437	2349198	2348533	2348942	+	HTR33	Cre17.g714650.t1.2		2348437	2349198	replication linked H3; histone gene cluster XXXIII (type 34BA)
chr17	2349721	2357316	2350097	2357132	-	Cre17.g714700.t1.1	Cre17.g714700.t1.1		2356773,2355383,2355051,2354783,2354599,2354370,2353585,2353323,2353019,2352755,2352342,2352143,2351865,2351560,2351348,2349721	2357316,2356706,2355147,2354894,2354647,2354492,2354231,2353458,2353162,2352883,2352557,2352190,2352011,2351700,2351407,2351195	
chr17	2357455	2359176	2358044	2359109	-	Cre17.g714750.t1.2	Cre17.g714750.t1.2		2359051,2358709,2357455	2359176,2358931,2358531	
chr17	2360266	2362883	2360506	2362420	+	ISG6	Cre17.g714800.t1.2		2360266,2360786,2361297,2361682	2360576,2361115,2361427,2362883	similar to Chlamydomonas incerta hydroxyproline-rich glycoprotein VSP-3
chr17	2363026	2367627	2363190	2366898	+	CGL11	Cre17.g714900.t1.2		2363026,2363449,2363719,2364009,2364527,2364938,2366898	2363294,2363512,2363772,2364130,2364612,2365808,2367627	
chr17	2367630	2372675	2368410	2371880	-	Cre17.g714950.t1.2	Cre17.g714950.t1.2		2372311,2371877,2371326,2367630	2372675,2372011,2371477,2371084	
chr17	2373685	2377656	2373819	2377080	+	HSP33	Cre17.g715000.t1.2		2373685,2373942,2374204,2374647,2374872,2375177,2375823,2376227,2376599,2376915	2373866,2374002,2374311,2374737,2374928,2375280,2375932,2376392,2376691,2377656	Redox-regulated chaperone, activated by oxidative stress; inactive as a monomer, active as a dimer, dimerization via disulfide bond formation. Acts as holdase to maintain unfolded proteins in folding competent state until DnaK is reactivated [PMID: 15694339]; might be targeted to the chloroplast, as judged by N-terminal extension and prediction by ChloroP.
chr17	2377806	2380195	2378499	2379781	-	RAB28	Cre17.g715050.t1.2		2377806	2380195	Expressed Protein. Similar to Rab28-like proteins from mammals and protists.
chr17	2380296	2382066	2380408	2381657	+	Cre17.g715100.t1.2	Cre17.g715100.t1.2		2380296,2380727,2381528	2380588,2380963,2382066	
chr17	2382136	2385249	2382270	2384514	+	Cre17.g715150.t1.2	Cre17.g715150.t1.2		2382136,2382480,2382742,2382933,2383203,2383506,2383797,2384194,2384475	2382396,2382548,2382812,2383089,2383342,2383587,2383937,2384307,2385249	
chr17	2385346	2386842	2385559	2385911	+	Cre17.g715176.t1.1	Cre17.g715176.t1.1		2385346	2386842	
chr17	2386966	2393483	2387304	2392236	+	Cre17.g715200.t1.1	Cre17.g715200.t1.1		2386966,2387948,2388151,2388790,2389308,2389578,2389956,2390539,2390796,2391105,2391643,2392088	2387688,2388031,2388276,2388888,2389337,2389616,2390072,2390630,2390879,2391261,2391902,2393483	
chr17	2393896	2396901	2394086	2396090	+	BCC1	Cre17.g715250.t1.2		2393896,2394237,2394628,2394927,2395276,2396000	2394164,2394358,2394736,2395002,2395487,2396901	biotin-containing subunit of the chloroplastic acetyl-coenzyme A carboxylase; N-terminal sequence identified by Edman degradation is AAKT...
chr17	2397326	2405565	2398074	2405379	-	PKD2	Cre17.g715300.t1.2		2405310,2404748,2403902,2403646,2403346,2401410,2400862,2400578,2400018,2399634,2399090,2398597,2397326	2405565,2405041,2404378,2403761,2403509,2403208,2401227,2400724,2400427,2399835,2399494,2398839,2398317	Flagellar protein  similar to polycystin-2; found in the flagellar proteome
chr17	2405728	2409285	2406336	2409130	-	Cre17.g715350.t1.2	Cre17.g715350.t1.2		2409058,2408832,2408711,2408530,2408269,2407871,2407688,2407450,2407145,2406726,2406458,2405728	2409285,2408950,2408750,2408619,2408351,2408061,2407782,2407572,2407306,2406974,2406560,2406341	
chr17	2405728	2409285	2406336	2409130	-	Cre17.g715350.t2.1	Cre17.g715350.t2.1		2409058,2408832,2408711,2408530,2408269,2407871,2407688,2407450,2407145,2406726,2406458,2405728	2409285,2408950,2408750,2408619,2408351,2408058,2407782,2407572,2407306,2406974,2406560,2406341	
chr17	2409406	2411917	2409449	2411653	+	Cre17.g715400.t1.1	Cre17.g715400.t1.1		2409406,2409793,2410099,2410335,2410637,2411150,2411653	2409641,2409931,2410184,2410462,2410997,2411534,2411917	
chr17	2411966	2415142	2412048	2414395	+	Cre17.g715421.t1.2	Cre17.g715421.t1.2		2411966,2414185	2414025,2415142	
chr17	2415196	2418917	2416085	2418765	+	Cre17.g715450.t1.2	Cre17.g715450.t1.2		2415196,2416080,2418244,2418668	2415237,2418056,2418533,2418917	
chr17	2418970	2421775	2419432	2421709	-	Cre17.g715500.t1.2	Cre17.g715500.t1.2		2421556,2421254,2420992,2420766,2420540,2420286,2420024,2419765,2418970	2421775,2421325,2421045,2420805,2420615,2420331,2420095,2419810,2419572	
chr17	2421876	2423927	2422027	2423647	+	Cre17.g715550.t1.1	Cre17.g715550.t1.1		2421876,2422358	2422166,2423927	
chr17	2423986	2430654	2424089	2429858	+	Cre17.g715600.t1.1	Cre17.g715600.t1.1		2423986,2424417,2424864,2425224,2425443,2425674,2426041,2429174	2424214,2424597,2425073,2425330,2425542,2425889,2428992,2430654	
chr17	2431231	2436305	2433515	2435958	-	Cre17.g715653.t1.2	Cre17.g715653.t1.2		2435867,2434830,2433995,2431231	2436305,2435674,2434633,2433764	
chr17	2436400	2441635	2437179	2441598	-	VTC3	Cre17.g715700.t1.2		2441496,2441342,2440861,2440502,2440069,2439821,2439429,2439196,2438428,2437687,2436400	2441635,2441408,2441028,2440629,2440323,2439929,2439634,2439282,2439055,2438285,2437374	VTC3 ortholog; contains N-terminal protein-kinase domain and C-terminal phosphatase domain
chr17	2441759	2443793	2441823	2443345	+	SEC13	Cre17.g715750.t1.2		2441759,2442174,2442582,2443021	2442105,2442326,2442722,2443793	Expressed Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec13/31 sub-complex.
chr17	2443966	2449838	2444344	2449135	+	Cre17.g715800.t1.1	Cre17.g715800.t1.1		2443966,2444807,2445209,2445644,2446220,2446584,2446836,2447262,2447374,2447699,2448143,2448463,2448635,2449041	2444381,2444955,2445354,2445846,2446298,2446679,2446904,2447280,2447453,2447902,2448218,2448492,2448849,2449838	
chr17	2450046	2464997	2450491	2464720	+	Cre17.g715801.t1.2	Cre17.g715801.t1.2		2450046,2452954,2453574,2454159,2454557,2454978,2455646,2455979,2457529,2458174,2458618,2460018,2461551,2462343,2462680	2452652,2453424,2453710,2454252,2454721,2455480,2455738,2457276,2457897,2458357,2459766,2461301,2462054,2462507,2464997	
chr17	2465526	2471357	2465720	2471029	+	Cre17.g715850.t1.2	Cre17.g715850.t1.2		2465526,2466114,2466592,2466946,2467470,2468688,2469236	2465777,2466314,2466736,2467215,2468359,2468994,2471357	
chr17	2472540	2477715	2473359	2477227	-	Cre17.g715900.t1.2	Cre17.g715900.t1.2		2476684,2476304,2476011,2475515,2475176,2474799,2474402,2474045,2473687,2472540	2477715,2476404,2476098,2475665,2475305,2474884,2474538,2474161,2473800,2473470	
chr17	2478226	2480296	2478348	2479952	+	Cre17.g715950.t1.2	Cre17.g715950.t1.2		2478226,2478715,2479271	2478503,2478841,2480296	
chr17	2480310	2483725	2481954	2483321	-	Cre17.g716000.t1.2	Cre17.g716000.t1.2		2483110,2482233,2480310	2483725,2482864,2482014	
chr17	2484236	2486207	2484337	2485780	+	Cre17.g716026.t1.1	Cre17.g716026.t1.1		2484236,2484472	2484382,2486207	
chr17	2486216	2494125	2487025	2493970	-	Cre17.g716050.t1.1	Cre17.g716050.t1.1		2493568,2493204,2492811,2492335,2491023,2490500,2490112,2489731,2488868,2488233,2487561,2486216	2494125,2493320,2493000,2492483,2491085,2490640,2490289,2489805,2489574,2488559,2487829,2487398	
chr17	2494276	2504457	2494413	2504403	+	POLL1	Cre17.g716101.t1.1		2494276,2497149,2497349,2497768,2498444,2498636,2499847,2500191,2500614,2500982,2501227,2501739,2502103,2502438,2503116,2503442,2503903,2504324	2496936,2497213,2497529,2498165,2498512,2499653,2499882,2500292,2500703,2501016,2501395,2501834,2502230,2502886,2503239,2503502,2504036,2504457	
chr17	2504460	2507885	2505823	2507834	-	SUM4	Cre17.g716150.t1.1		2507830,2507688,2506961,2504460	2507885,2507779,2507562,2506814	Belongs to a cluster of 4 closely-related genes coding for fusion proteins between a Gibberellin 2-beta-dioxygenase domain and a C-terminal SUMO domain; does not contain the C-terminal GG motif, but GN; post-translational modification by SUMO modulates many important cellular processes
chr17	2507938	2512295	2509321	2511120	-	SUM6	Cre17.g716200.t1.2		2512152,2510751,2510027,2507938	2512295,2511120,2510625,2509892	Belongs to a cluster of 4 closely-related genes coding for fusion proteins between a Gibberellin 2-beta-dioxygenase domain and a C-terminal SUMO domain; does not contain the C-terminal GG motif, but GN; post-translational modification by SUMO modulates many important cellular processes
chr17	2512345	2515555	2513317	2515519	-	SUM5	Cre17.g716251.t1.1		2515153,2514429,2512345	2515555,2515027,2514299	Belongs to a cluster of 4 closely-related genes coding for fusion proteins between a Gibberellin 2-beta-dioxygenase domain and a C-terminal SUMO domain; does not contain the C-terminal GG motif, but GN; post-translational modification by SUMO modulates many important cellular processes
chr17	2515610	2518085	2516050	2517876	-	SUM7	Cre17.g716301.t1.1		2517507,2516780,2515610	2518085,2517381,2516645	Belongs to a cluster of 4 closely-related genes coding for fusion proteins between a Gibberellin 2-beta-dioxygenase domain and a C-terminal SUMO domain; does not contain the C-terminal GG motif, but GN; post-translational modification by SUMO modulates many important cellular processes
chr17	2518140	2523675	2518469	2523486	-	Cre17.g716350.t1.2	Cre17.g716350.t1.2		2523372,2522689,2521918,2521443,2521010,2520622,2520175,2519759,2519480,2519053,2518140	2523675,2522765,2522281,2521563,2521064,2520733,2520306,2519854,2519605,2519136,2518796	
chr17	2523804	2528165	2524267	2528061	-	Cre17.g716400.t1.2	Cre17.g716400.t1.2		2527661,2527119,2526419,2525534,2524793,2523804	2528165,2527411,2526604,2525716,2525025,2524427	
chr17	2528346	2534037	2528480	2533912	+	Cre17.g716450.t1.1	Cre17.g716450.t1.1		2528346,2528921,2529252,2529728,2530559,2530908,2531318,2531588,2531879,2532301,2532813,2533623	2528734,2529011,2529562,2530344,2530649,2531028,2531390,2531745,2532052,2532505,2532900,2534037	
chr17	2534086	2537819	2534230	2537572	+	Cre17.g716451.t1.2	Cre17.g716451.t1.2		2534086,2534410,2534613,2535359,2537434	2534290,2534487,2535217,2535455,2537819	Simiar to the N-terminal part of nearby SUM4, SUM5, SUM6 which carry a C-terminal SUMO domain as a fusion
chr17	2539026	2543289	2542302	2542687	+	Cre17.g716500.t1.2	Cre17.g716500.t1.2		2539026,2539328,2540178,2541988,2542297	2539065,2539418,2540253,2542034,2543289	
chr17	2539026	2543289	2542302	2542687	+	Cre17.g716500.t2.1	Cre17.g716500.t2.1		2539026,2539328,2540178,2542297	2539065,2539418,2540253,2543289	
chr17	2549491	2551662	2549846	2550623	+	Cre17.g716576.t1.2	Cre17.g716576.t1.2		2549491,2550277,2550617	2549896,2550433,2551662	
chr17	2549491	2551262	2549846	2550623	+	Cre17.g716576.t2.1	Cre17.g716576.t2.1		2549491,2550277,2550617	2549896,2550433,2551262	
chr17	2551709	2560000	2553807	2559425	-	Cre17.g716600.t1.1	Cre17.g716600.t1.1		2559689,2559547,2559406,2558993,2558825,2558553,2558347,2558207,2557994,2557728,2557379,2555161,2554806,2554488,2551709	2560000,2559567,2559429,2559178,2558872,2558626,2558432,2558234,2558050,2557801,2557544,2555415,2554919,2554565,2554323	
chr17	2551709	2559860	2553807	2559425	-	Cre17.g716600.t2.1	Cre17.g716600.t2.1		2559773,2559547,2559406,2558993,2558825,2558553,2558347,2558207,2557994,2557728,2557379,2555161,2554806,2554488,2551709	2559860,2559567,2559429,2559178,2558872,2558626,2558432,2558234,2558050,2557801,2557544,2555415,2554919,2554565,2554323	
chr17	2560054	2562810	2560624	2562387	-	Cre17.g716613.t1.1	Cre17.g716613.t1.1		2562295,2561833,2561602,2561127,2560859,2560054	2562810,2561971,2561671,2561167,2560943,2560632	
chr17	2560054	2562810	2560632	2561913	-	Cre17.g716625.t1.1	Cre17.g716625.t1.1		2562290,2561833,2560859,2560054	2562810,2561971,2561671,2560632	
chr17	2560054	2562810	2560632	2561913	-	Cre17.g716625.t2.1	Cre17.g716625.t2.1		2562295,2561833,2560859,2560054	2562810,2561971,2561671,2560632	
chr17	2563014	2566820	2564261	2566467	-	Cre17.g716650.t1.2	Cre17.g716650.t1.2		2566565,2566364,2566134,2565716,2565204,2563014	2566820,2566490,2566217,2565918,2565308,2564801	
chr17	2567917	2571646	2568035	2569507	+	Cre17.g716700.t1.1	Cre17.g716700.t1.1		2567917,2568194,2568672,2569276	2568062,2568500,2568970,2571646	
chr17	2572471	2577822	2573113	2575442	+	Cre17.g716750.t1.1	Cre17.g716750.t1.1		2572471,2573037,2573717,2574219,2575340	2572870,2573162,2573800,2575006,2577822	
chr17	2572471	2577822	2573113	2575442	+	Cre17.g716750.t2.1	Cre17.g716750.t2.1		2572471,2573097,2573717,2574219,2575340	2572870,2573162,2573800,2575006,2577822	
chr17	2578005	2588630	2578849	2588248	-	XUV7	Cre17.g716800.t1.2		2588160,2587260,2586907,2586609,2586237,2585826,2585263,2584590,2584206,2583656,2583223,2582826,2582312,2581967,2581602,2581199,2579738,2578005	2588630,2587783,2586982,2586630,2586306,2585918,2585394,2584685,2584347,2583777,2583297,2582988,2582466,2582045,2581688,2581307,2580506,2579497	sodium-dependent
chr17	2588761	2593602	2588898	2593585	+	Cre17.g716850.t1.1	Cre17.g716850.t1.1		2588761,2589764,2590376,2590723,2591090,2591619,2591971,2592781,2592990,2593236,2593570	2589030,2590039,2590476,2590807,2591158,2591711,2592302,2592832,2593089,2593504,2593602	
chr17	2593604	2595370	2594287	2595350	-	Cre17.g716900.t1.1	Cre17.g716900.t1.1		2593604	2595370	
chr17	2595426	2597840	2596968	2597749	-	Cre17.g716950.t1.1	Cre17.g716950.t1.1		2595426	2597840	
chr17	2597941	2601032	2598499	2600326	+	Cre17.g717000.t1.1	Cre17.g717000.t1.1		2597941,2598290,2598673,2599153,2599536,2600170	2598000,2598505,2598749,2599306,2599682,2601032	
chr17	2601035	2612360	2601888	2611971	-	Cre17.g717050.t1.1	Cre17.g717050.t1.1		2611178,2609928,2609523,2608803,2608492,2608089,2607836,2607484,2607088,2606688,2605935,2605490,2604969,2604455,2604023,2603300,2602892,2602530,2601035	2612360,2610737,2609686,2608986,2608570,2608137,2607961,2607610,2607313,2606848,2606388,2605645,2605036,2604577,2604138,2603395,2602969,2602615,2602180	
chr17	2612772	2622100	2614960	2621621	-	Cre17.g717100.t1.2	Cre17.g717100.t1.2		2621960,2621742,2621202,2620657,2619638,2619200,2618771,2617461,2617018,2616641,2616104,2615687,2612772	2622100,2621822,2621635,2620768,2619821,2619237,2618878,2618177,2617112,2616719,2616202,2615782,2615080	
chr17	2612772	2622100	2614960	2621621	-	Cre17.g717100.t2.1	Cre17.g717100.t2.1		2621960,2621746,2621202,2620657,2619638,2619200,2618771,2617461,2617018,2616641,2616104,2615687,2612772	2622100,2621822,2621635,2620768,2619821,2619237,2618878,2618177,2617112,2616719,2616202,2615782,2615080	
chr17	2622201	2627570	2622900	2627251	-	FAP263	Cre17.g717150.t1.2		2627167,2626871,2625816,2625472,2624915,2624458,2624097,2623721,2623276,2622201	2627570,2626930,2626040,2625638,2625041,2624577,2624180,2623818,2623429,2623011	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr17	2628011	2632442	2628204	2632160	+	Cre17.g717200.t1.1	Cre17.g717200.t1.1		2628011,2628671,2629074,2629623,2630241,2630587,2631050,2631873	2628282,2628793,2629307,2629784,2630296,2630661,2631165,2632442	
chr17	2628011	2631432	2628204	2631380	+	Cre17.g717200.t2.1	Cre17.g717200.t2.1		2628011,2628671,2629074,2629623,2630241,2630587,2631050,2631375	2628282,2628793,2629307,2629784,2630296,2630661,2631165,2631432	
chr17	2631434	2634800	2632093	2634687	-	Cre17.g717250.t1.1	Cre17.g717250.t1.1		2634585,2634417,2634153,2633700,2632683,2631434	2634800,2634478,2634279,2633939,2633412,2632093	
chr17	2636015	2641860	2639001	2641801	-	Cre17.g717300.t1.1	Cre17.g717300.t1.1		2641696,2640835,2640526,2639792,2639338,2636015	2641860,2640873,2640612,2639933,2639508,2639141	similar to PTP genes; protein-tyrosine phosphatase
chr17	2641961	2647711	2642664	2647319	+	TRI1	Cre17.g717350.t1.2		2641961,2643290,2643638,2644197,2644976,2645314,2645951,2646382,2646792	2642970,2643352,2643697,2644642,2645110,2645474,2646089,2646479,2647711	
chr17	2648331	2653718	2649078	2653026	+	Cre17.g717400.t1.1	Cre17.g717400.t1.1		2648331,2649291,2650469,2651691,2652178,2652577,2652975	2649183,2650345,2650565,2651892,2652295,2652664,2653718	
chr17	2655102	2657138	2655731	2656826	-	Cre17.g717500.t1.2	Cre17.g717500.t1.2		2657028,2656649,2656321,2656069,2655102	2657138,2656887,2656515,2656140,2655872	
chr17	2657185	2657920	2657283	2657896	-	Cre17.g717550.t1.2	Cre17.g717550.t1.2		2657185	2657920	
chr17	2658021	2662422	2658379	2661390	+	Cre17.g717600.t1.2	Cre17.g717600.t1.2		2658021,2658723,2659049,2659395,2659757,2660417,2660907	2658507,2658779,2659259,2659613,2660256,2660687,2662422	
chr17	2669171	2671342	2669301	2671318	+	Cre17.g717700.t1.1	Cre17.g717700.t1.1		2669171,2669894,2670200,2670597,2671264	2669463,2669979,2670245,2670767,2671342	
chr17	2671345	2672850	2672022	2672746	-	TRX24	Cre17.g717750.t1.2		2671345	2672850	Shares some similarities with putative ATP binding protein. Contains a thioredoxin homology domain lacking the thioredoxin active site.
chr17	2673001	2682532	2673057	2682006	+	Cre17.g717800.t1.2	Cre17.g717800.t1.2		2673001,2673255,2673805,2674210,2674604,2675207,2675815,2676173,2676948,2677322,2677942,2678343,2678904,2679285,2679741,2680155,2680525,2681068,2681511,2681961	2673114,2673406,2673931,2674402,2674776,2675416,2675907,2676459,2677032,2677481,2678062,2678484,2679051,2679355,2679893,2680317,2680754,2681178,2681648,2682532	
chr17	2685191	2692102	2685230	2690493	+	PHC8	Cre17.g717850.t1.1		2685191,2685591,2686383,2687043,2687545,2688022,2688439,2688718,2689077,2689475,2690066,2690455	2685280,2685795,2686813,2687283,2687679,2688090,2688501,2688869,2689203,2689634,2690206,2692102	pherophorin-C8 (PHC8) [PMID: 16367971]; belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain
chr17	2693361	2696479	2693611	2695893	+	PHC1	Cre17.g717900.t1.2		2693361,2693965,2694356,2695835	2693652,2694163,2695590,2696479	pherophorin-C1 (PHC1) [PMID: 16367971; belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain
chr17	2696531	2698082	2696998	2697203	+	Cre17.g717919.t1.2	Cre17.g717919.t1.2		2696531	2698082	
chr17	2696751	2697892	2696998	2697203	+	Cre17.g717919.t2.1	Cre17.g717919.t2.1		2696751	2697892	
chr17	2698091	2702070	2698717	2701336	-	PHC28	Cre17.g717950.t1.2		2701427,2701298,2700773,2699933,2699055,2698091	2702070,2701356,2700971,2700580,2699611,2698778	
chr17	2698091	2702210	2698717	2701336	-	PHC28	Cre17.g717950.t2.1		2701427,2701298,2700773,2699933,2699055,2698091	2702210,2701356,2700971,2700580,2699611,2698778	
chr17	2702311	2708092	2702745	2707021	+	PHC7	Cre17.g718000.t1.1		2702311,2703106,2703500,2704747,2705188,2705470,2706127,2706345,2706954	2702795,2703307,2704585,2704932,2705253,2705592,2706197,2706743,2708092	pherophorin-C6 (PHC6) [PMID: 16367971; Genbank entry DQ196112]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain. (partial sequence, outermost N-terminal end including signal peptide is missing, C-terminal half is missing due to a sequence gap)
chr17	2708597	2713380	2708825	2713150	-	Cre17.g718050.t1.2	Cre17.g718050.t1.2		2712931,2712541,2712247,2712066,2711786,2711481,2711285,2711049,2710724,2710421,2710087,2709709,2708597	2713380,2712690,2712378,2712116,2711868,2711643,2711323,2711113,2710806,2710578,2710227,2709774,2709542	
chr17	2713491	2719382	2713719	2718411	+	Cre17.g718100.t1.2	Cre17.g718100.t1.2		2713491,2713876,2714293,2714572,2714793,2715073,2715238,2715543,2716818	2713785,2713939,2714483,2714628,2714938,2715115,2715363,2716634,2719382	
chr17	2713491	2719382	2713719	2718411	+	Cre17.g718100.t2.1	Cre17.g718100.t2.1		2713491,2713876,2714293,2714572,2714793,2715073,2715238,2715543,2716818	2713785,2713939,2714483,2714628,2714938,2715115,2715363,2716436,2719382	
chr17	2723124	2731141	2724384	2730903	-	Cre17.g718150.t1.1	Cre17.g718150.t1.1		2730327,2729960,2729500,2728590,2727954,2727197,2725435,2723124	2731141,2730061,2729655,2729123,2728218,2727675,2726859,2725236	
chr17	2731216	2735061	2732096	2734937	-	Cre17.g718185.t1.2	Cre17.g718185.t1.2		2734802,2733235,2732937,2732644,2731216	2735061,2734570,2733057,2732720,2732455	
chr17	2735162	2737273	2735382	2736611	+	Cre17.g718200.t1.2	Cre17.g718200.t1.2		2735162,2735532,2735876,2736248,2736555	2735413,2735686,2735953,2736341,2737273	
chr17	2737276	2740287	2737295	2740169	-	Cre17.g718250.t1.1	Cre17.g718250.t1.1		2740091,2739829,2739607,2739370,2739050,2738802,2738462,2737868,2737439,2737276	2740287,2739891,2739651,2739446,2739149,2738900,2738566,2738164,2737503,2737377	dTDP-4-dehydrorhamnose reductase, an NAD-dependent epimerase/dehydratase (see SNE series)
chr17	2740855	2745411	2741773	2745191	-	Cre17.g718300.t1.1	Cre17.g718300.t1.1		2744837,2744245,2743935,2743564,2743131,2742610,2742129,2740855	2745411,2744363,2744000,2743669,2743226,2742726,2742230,2741812	
chr17	2740855	2745411	2741773	2745191	-	Cre17.g718300.t2.1	Cre17.g718300.t2.1		2744942,2744245,2743935,2743564,2743131,2742610,2742129,2740855	2745411,2744363,2744000,2743669,2743226,2742726,2742230,2741812	
chr17	2745512	2746690	2745571	2746289	+	SRP2	Cre17.g718350.t1.2		2745512	2746690	Expressed Protein. Similar to the Beta subunit of the Signal Recognition Particle (SRP) Receptor. Involved in Protein Translocation across the ER membrane
chr17	2746696	2751581	2746974	2751542	-	Cre17.g718400.t1.2	Cre17.g718400.t1.2		2751310,2750998,2750307,2749773,2749453,2748844,2747798,2746696	2751581,2751131,2750764,2749862,2749561,2749041,2748520,2747544	
chr17	2751732	2755483	2751988	2755169	+	MMP2	Cre17.g718450.t1.1		2751732,2752494,2754003,2754926	2752280,2753860,2754740,2755483	Matrix Metalloprotease 2; Expressed in young zygotes [GI:15718393, PMID: 11680823]
chr17	2755532	2760353	2755587	2759438	+	Cre17.g718468.t1.2	Cre17.g718468.t1.2		2755532,2755862,2756355,2756791,2756914,2757116,2757671,2758142,2758446,2758699	2755672,2756130,2756489,2756810,2756989,2757172,2757928,2758305,2758553,2760353	
chr17	2760552	2766223	2760736	2764623	+	MMP1	Cre17.g718500.t1.1		2760552,2761372,2761595,2762122,2762482,2762800,2763064,2763488,2763932	2760758,2761441,2761719,2762363,2762691,2762904,2763387,2763732,2766223	Matrix Metalloprotease 2; Expressed in young zygotes [GI:15718393, PMID: 11680823]
chr17	2766342	2774565	2767071	2774276	+	Cre17.g718550.t1.1	Cre17.g718550.t1.1		2766342,2766588,2766911,2767422,2767622,2767963,2768597,2768931,2769219,2772177,2772509,2772881,2773211	2766486,2766789,2767187,2767509,2767761,2768413,2768745,2768993,2771937,2772317,2772626,2772996,2774565	
chr17	2774567	2777671	2774918	2777549	-	Cre17.g718600.t1.2	Cre17.g718600.t1.2		2777439,2776884,2776456,2775812,2775583,2775336,2774567	2777671,2776990,2776622,2776200,2775601,2775430,2775090	
chr17	2777952	2782393	2778108	2781548	+	Cre17.g718650.t1.2	Cre17.g718650.t1.2		2777952,2778289,2778526,2778804,2779100,2779560,2780247,2780663,2780968,2781207,2781444	2778205,2778343,2778590,2778972,2779259,2779820,2780367,2780772,2781087,2781333,2782393	
chr17	2782736	2785301	2783379	2785203	-	Cre17.g718700.t1.2	Cre17.g718700.t1.2		2785161,2784933,2784658,2784274,2782736	2785301,2784959,2784837,2784441,2784015	
chr17	2785356	2792561	2785918	2792314	-	FAP309	Cre17.g718750.t1.2		2792255,2791980,2791676,2791250,2791019,2790731,2790312,2789988,2789656,2789140,2788619,2788099,2787710,2787359,2786868,2786256,2785356	2792561,2792031,2791759,2791407,2791070,2790859,2790381,2790079,2789844,2789201,2788790,2788257,2787796,2787547,2787081,2786404,2786023	
chr17	2792662	2795973	2792768	2795422	+	Cre17.g718800.t1.2	Cre17.g718800.t1.2		2792662,2792991,2793398,2793752,2793981,2794551,2794845,2795296	2792840,2793218,2793557,2793855,2794207,2794698,2795000,2795973	Metallophosphoesterase/metallo-dependent phosphatase with type 1 Kelch-repeat
chr17	2796048	2801724	2796122	2801328	+	RFA1	Cre17.g718850.t1.1		2796048,2796301,2796755,2797679,2797857,2798127,2798411,2798741,2799084,2799343,2799532,2799742,2800048,2800355,2800590	2796222,2796496,2797538,2797729,2797967,2798213,2798539,2798886,2799189,2799411,2799596,2799835,2800170,2800411,2801724	Homologous to eukaryotic RPA 70 kDa subunit; RP-A; RF-A; Replication factor-A protein 1; Single-stranded DNA-binding protein; Chlamydomonas has at least two homologues of RPA70.
chr17	2802182	2811223	2802422	2810645	+	FAP88	Cre17.g718900.t1.2		2802182,2802640,2802973,2803487,2803868,2804202,2804624,2805213,2805644,2806124,2806466,2806795,2807238,2807718,2808194,2808532,2809022,2809554,2809905,2810324	2802455,2802784,2803164,2803645,2804022,2804472,2804853,2805461,2805868,2806261,2806553,2806979,2807401,2807856,2808289,2808780,2809160,2809672,2810075,2811223	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr17	2811392	2817880	2811731	2816855	+	RCA2	Cre17.g718950.t1.2		2811392,2812219,2812497,2813313,2813882,2814288,2814681,2814992,2815385,2815563,2815893,2816161,2816624	2811896,2812243,2812654,2813449,2813969,2814377,2814741,2815113,2815432,2815615,2815984,2816315,2817880	Related to RuBisCO activase (RCA); catalyzes the activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39); via the ATP-dependent carboxylation of the epsilon-amino group of lysine.
chr17	2818792	2822333	2818886	2821926	+	UAP56	Cre17.g719000.t1.2		2818792,2819205,2819440,2819749,2820005,2820783,2821127,2821460,2821764	2819082,2819377,2819589,2819830,2820123,2820914,2821243,2821636,2822333	Putative DEAD box protein UAP56, spliceosome-associated, part of EJC, involved in transport of mRNA out of nucleus
chr17	2822462	2825230	2822565	2824898	+	Cre17.g719050.t1.1	Cre17.g719050.t1.1		2822462,2822834,2823139,2823356,2823801,2824214,2824379,2824574,2824764	2822700,2822951,2823212,2823493,2823917,2824250,2824419,2824685,2825230	
chr17	2825282	2828383	2825419	2827442	+	ZYS1B	Cre17.g719100.t1.2		2825282,2825727,2826147,2827442	2825557,2825864,2827200,2828383	expressed during early stage of zygote formation (PMID: 8252638); highly similar to ZYS1A
chr17	2828432	2829173	2828595	2828974	+	Cre17.g719150.t1.2	Cre17.g719150.t1.2		2828432	2829173	belongs to a small gene family specific of Chlamydomonas
chr17	2834031	2835421	2834284	2835290	-	ZYS1A	Cre17.g719200.t1.2		2835152,2834833,2834031	2835421,2834970,2834560	Putative transcription factor, containing a zinc-finger domain. This is one of a pair of genes, ZYS1a and ZYS1b, present as an inverted tandem repeat, coding for nearly identical proteins. Both copies are transcribed within minutes after zygote formation, and the protein localizes to the nucleus. Production of the protein is affected if mt+, but not mt-, gametes are UV-irradiated before mating -- hinting that the gene may have an involvement in uniparental inheritance of chlpDNA [PMID: 8252638 and PMID: 10541861]. Independent sequence at AB001485. The expression of the ZYS1 message was assessed in mt- gametes inappropriately expressing the plus-specific GSP1 protein - see PMID: 11641281.
chr17	2835476	2841261	2836391	2841114	-	Cre17.g719250.t1.1	Cre17.g719250.t1.1		2841051,2840925,2840771,2840159,2839557,2839104,2838726,2838426,2837963,2837522,2837111,2835476	2841261,2840981,2840833,2840281,2839664,2839229,2838847,2838557,2838099,2837718,2837212,2836904	
chr17	2844092	2861199	2844836	2859886	+	MAW5	Cre17.g719325.t1.1		2844092,2845370,2845645,2845878,2846185,2846678,2847035,2847431,2847895,2848235,2848479,2848819,2849292,2849730,2850120,2850442,2854974,2855345,2855674,2856057,2856435,2856836,2857387,2857759,2858143,2858447,2858713,2859325	2844974,2845491,2845739,2845970,2846291,2846842,2847154,2847656,2848045,2848365,2848657,2848956,2849459,2849891,2850233,2854749,2855105,2855523,2855788,2856268,2856623,2857095,2857505,2857980,2858275,2858556,2859054,2861199	Contains a predicted C-terminal transmembrane domain.
chr17	2863146	2866951	2863532	2866843	-	Cre17.g719400.t1.1	Cre17.g719400.t1.1		2866806,2866482,2866106,2865484,2864776,2864362,2863895,2863146	2866951,2866639,2866223,2865647,2865252,2864478,2863954,2863625	
chr17	2867092	2875579	2867353	2873703	+	Cre17.g719450.t1.1	Cre17.g719450.t1.1		2867092,2867959,2869158,2869501,2869973,2870617,2871084,2871574,2872026,2872376,2872694,2873133	2867574,2868505,2869234,2869582,2870119,2870769,2871250,2871680,2872052,2872464,2872849,2875579	
chr17	2875586	2882951	2875987	2882866	-	AOF9	Cre17.g719500.t1.1		2882510,2882078,2881412,2880556,2880149,2879650,2878950,2878717,2878417,2877677,2877026,2876639,2875586	2882951,2882186,2881554,2880612,2880284,2879757,2879117,2878764,2878524,2877809,2877163,2876718,2876170	Flavin-containing amine oxidase, possibly a carotene 7,8-desaturase (see ZDS1)
chr17	2883006	2889061	2883356	2888680	-	Cre17.g719522.t1.2	Cre17.g719522.t1.2		2888617,2888187,2887539,2886900,2886332,2885960,2885657,2885121,2884301,2883006	2889061,2888489,2887877,2886996,2886427,2886023,2885770,2885532,2884921,2884034	
chr17	2889332	2891134	2889736	2890099	+	Cre17.g719537.t1.1	Cre17.g719537.t1.1		2889332,2890049	2889953,2891134	
chr17	2891296	2893101	2892360	2892934	-	Cre17.g719550.t1.2	Cre17.g719550.t1.2		2891296	2893101	
chr17	2893202	2895587	2893259	2894131	+	FAP338	Cre17.g719600.t1.2		2893202,2893511,2893742,2894025	2893417,2893571,2893791,2895587	
chr17	2895606	2898071	2896028	2896793	-	Cre17.g719651.t1.1	Cre17.g719651.t1.1		2897428,2897281,2897028,2896785,2896457,2895606	2898071,2897309,2897083,2896865,2896553,2896094	
chr17	2898154	2900521	2899170	2900361	-	Cre17.g719701.t1.1	Cre17.g719701.t1.1		2900181,2900055,2899943,2899444,2898154	2900521,2900104,2900015,2899503,2899230	
chr17	2902380	2905231	2903986	2904362	-	Cre17.g719750.t1.1	Cre17.g719750.t1.1		2904940,2902380	2905231,2904824	
chr17	2905326	2910806	2907458	2910805	-	Cre17.g719771.t1.1	Cre17.g719771.t1.1		2910769,2909751,2909382,2909060,2908261,2905326	2910806,2910500,2909492,2909157,2908690,2907989	
chr17	2910907	2913691	2911920	2913631	-	Cre17.g719792.t1.1	Cre17.g719792.t1.1		2913603,2912488,2912313,2910907	2913691,2912735,2912425,2912149	
chr17	2914347	2915481	2915205	2915440	-	Cre17.g719813.t1.1	Cre17.g719813.t1.1		2915427,2914347	2915481,2915357	
chr17	2915586	2921381	2916564	2921339	-	Cre17.g719834.t1.1	Cre17.g719834.t1.1		2921131,2920123,2919854,2919207,2918490,2917971,2915586	2921381,2920155,2919904,2919594,2919045,2918139,2917874	
chr17	2921436	2924381	2922299	2923636	-	Cre17.g719855.t1.1	Cre17.g719855.t1.1		2922566,2921436	2924381,2922299	
chr17	2924856	2934791	2925660	2934681	-	Cre17.g719876.t1.1	Cre17.g719876.t1.1		2934354,2933869,2932529,2932049,2931639,2930028,2929628,2929293,2927950,2927579,2927256,2926463,2924856	2934791,2934002,2933459,2932147,2931716,2931345,2929752,2929385,2928690,2927689,2927353,2926892,2926191	
chr17	2934922	2944603	2935094	2944095	+	PWD1	Cre17.g719900.t1.2		2934922,2935289,2935453,2935929,2936165,2936525,2936869,2937382,2937855,2938315,2938550,2938880,2939196,2939634,2940080,2940491,2940925,2941210,2941557,2941904,2942675,2943107,2943447,2943781	2935205,2935333,2935602,2935991,2936335,2936604,2937057,2937573,2938047,2938360,2938620,2938940,2939374,2939792,2940241,2940653,2941035,2941316,2941676,2942467,2942889,2943270,2943551,2944603	Contains starch-bnding domain; involved in starch metabolism
chr17	2944732	2949113	2944839	2947180	+	Cre17.g719950.t1.2	Cre17.g719950.t1.2		2944732,2946133	2945643,2949113	
chr17	2949116	2955881	2949529	2955828	-	CCT9	Cre17.g720000.t1.1		2955752,2955469,2955250,2954897,2954517,2954227,2953714,2952616,2952130,2951869,2951546,2950864,2950573,2949900,2949116	2955881,2955590,2955318,2954950,2954591,2954310,2953770,2952758,2952442,2951937,2951716,2951349,2950710,2950403,2949754	T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (TCPF); subunit of cytosolic chaperonin complex
chr17	2955992	2960456	2956135	2959698	+	FTSH2	Cre17.g720050.t1.2		2955992,2956308,2956438,2956597,2956923,2957301,2957740,2958157,2958553,2958954	2956205,2956348,2956487,2956726,2957118,2957503,2957958,2958387,2958738,2960456	FtsH protease 2, type B; AAA metalloprotease protease, chloroplast; ortholog of Arabidopsis FtsH2=Var2 and FtsH8
chr17	2960588	2964751	2960853	2963952	-	Cre17.g720100.t1.2	Cre17.g720100.t1.2		2963734,2963143,2962699,2962410,2962206,2960588	2964751,2963584,2963031,2962448,2962262,2961885	
chr17	2965182	2972213	2965555	2970804	+	Cre17.g720150.t1.1	Cre17.g720150.t1.1		2965182,2965521,2965671,2965912,2967414,2968645,2969904	2965419,2965597,2965692,2967194,2968386,2969663,2972213	
chr17	2972216	2974931	2972553	2974544	-	Cre17.g720183.t1.1	Cre17.g720183.t1.1		2974531,2974130,2973617,2973162,2972895,2972216	2974931,2974206,2973957,2973277,2972951,2972702	
chr17	2972216	2974931	2972553	2974217	-	Cre17.g720183.t2.1	Cre17.g720183.t2.1		2974130,2973617,2973162,2972895,2972216	2974931,2973957,2973277,2972951,2972702	
chr17	2974986	2976914	2975490	2976879	-	LHCB4	Cre17.g720250.t1.2		2976650,2976055,2974986	2976914,2976310,2975848	
chr17	2977032	2978233	2977262	2977575	+	Cre17.g720256.t1.1	Cre17.g720256.t1.1		2977032	2978233	
chr17	2978366	2987781	2979092	2987314	-	Cre17.g720261.t1.1	Cre17.g720261.t1.1		2987670,2985576,2985223,2984790,2984372,2983975,2983692,2983405,2982462,2981997,2981742,2981485,2981139,2980788,2980361,2979892,2979444,2978366	2987781,2987384,2985371,2984854,2984557,2984049,2983794,2983464,2983109,2982056,2981840,2981541,2981264,2980905,2980534,2980064,2979592,2979201	
chr17	2987942	2997073	2988128	2995734	+	Cre17.g720300.t1.2	Cre17.g720300.t1.2		2987942,2988891,2989290,2989639,2990024,2990500,2991183,2992142,2992808,2993128,2993476,2993788,2994092,2994667,2994996	2988332,2988935,2989406,2989784,2990306,2990863,2991641,2992324,2992932,2993243,2993518,2993954,2994444,2994845,2997073	
chr17	2997084	2998676	2997607	2998504	-	MINE1	Cre17.g720350.t1.1		2998063,2997084	2998676,2997793	helps define position of the chloroplast division ring (PMID: 11743109); conserved in plants and eubacteria
chr17	3000362	3008563	3000848	3006357	+	HMA1	Cre17.g720400.t1.1		3000362,3001598,3002060,3002260,3002900,3003324,3004527,3004856,3005376	3001395,3001836,3002110,3002718,3003136,3004407,3004691,3005148,3008563	heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein. Related to AtHMA1 (a chloroplastic Cu transporter, PMID: 16282320), and to bacterial heavy metal transporting ATPase (HMA, p-type ATPase superfamily). Like AtHMA1, the Chlamydomonas protein has an uncharacteristic Ser/Pro/Cys motif in the sixth transmembrane domain instead of the common Cys-Pro-Cys/His/Ser motif of HMAs [PMID: 15710683].
chr17	3008670	3016145	3009528	3015822	-	Cre17.g720450.t1.1	Cre17.g720450.t1.1		3015815,3015717,3015562,3015227,3014529,3014098,3013697,3013429,3012899,3012467,3012139,3011840,3011453,3010993,3010731,3010214,3009904,3008670	3016145,3015742,3015597,3015388,3014882,3014343,3013966,3013545,3013120,3012658,3012309,3011980,3011623,3011158,3010789,3010542,3010036,3009717	
chr17	3018306	3025047	3018375	3024605	+	Cre17.g720500.t1.1	Cre17.g720500.t1.1		3018306,3018569,3018761,3019049,3019318,3019574,3019738,3020114,3020411,3022111,3022493,3022752,3023042,3023536,3023899,3024223,3024425	3018504,3018605,3018879,3019130,3019443,3019619,3019951,3020301,3021974,3022355,3022664,3022870,3023243,3023752,3024065,3024282,3025047	
chr17	3025896	3029877	3026087	3028377	+	Cre17.g720528.t1.2	Cre17.g720528.t1.2		3025896,3026291,3026627,3026980,3027300,3027654,3028022,3028305	3026194,3026436,3026697,3027157,3027420,3027862,3028128,3029877	
chr17	3030160	3032773	3031220	3032718	-	Cre17.g720550.t1.2	Cre17.g720550.t1.2		3032650,3032365,3032067,3031804,3031517,3030160	3032773,3032470,3032239,3031844,3031628,3031377	
chr17	3032946	3047387	3033081	3046668	+	CAV1	Cre17.g720600.t1.1		3032946,3033662,3034390,3034889,3035205,3035581,3035898,3036306,3036620,3037214,3037591,3037906,3038218,3038642,3039208,3039724,3040160,3040517,3040857,3041239,3041769,3042143,3042635,3043163,3043412,3043759,3044322,3044704,3045153	3033348,3033775,3034576,3035025,3035329,3035708,3036091,3036391,3036818,3037410,3037701,3037966,3038427,3039018,3039544,3039843,3040342,3040690,3041046,3041528,3041906,3042398,3042983,3043284,3043542,3043965,3044504,3044877,3047387	Calcium channel, 4-domain, voltage-dependent, alpha subunit
chr17	3047400	3060265	3048169	3060133	-	ANK14	Cre17.g720700.t1.1		3060001,3059819,3059297,3058562,3058199,3057737,3057504,3057121,3056750,3056405,3055745,3055513,3055187,3054766,3054277,3053836,3053441,3052718,3052291,3051609,3051272,3050959,3050444,3050134,3049834,3049530,3049142,3047400	3060265,3059932,3059398,3058660,3058309,3057811,3057557,3057222,3056848,3056515,3055981,3055578,3055285,3054864,3054396,3053931,3053539,3052819,3052443,3051740,3051370,3051031,3050656,3050177,3049932,3049625,3049240,3048913	Protein of unknown function with ankyrin repeats
chr17	3047400	3060265	3048169	3060133	-	ANK14	Cre17.g720700.t2.1		3060001,3059819,3059297,3058562,3058199,3057737,3057504,3057121,3056750,3056405,3055745,3055513,3055187,3054766,3054277,3053836,3053441,3052718,3052291,3051609,3051272,3050959,3050134,3049834,3049530,3049142,3047400	3060265,3059932,3059398,3058660,3058309,3057811,3057557,3057222,3056848,3056515,3055981,3055578,3055285,3054864,3054396,3053931,3053539,3052819,3052443,3051740,3051370,3051031,3050177,3049932,3049625,3049240,3048913	Protein of unknown function with ankyrin repeats
chr17	3060353	3066435	3060699	3066383	-	TRF4	Cre17.g720750.t1.2		3066191,3065350,3064865,3064215,3063723,3063290,3062852,3062526,3060353	3066435,3066007,3065130,3064313,3063908,3063484,3062983,3062600,3062250	Similar to yeast trf4, which belongs to the TRAMP complex that activates the nuclear exosome
chr17	3066536	3073022	3066752	3072553	+	Cre17.g720800.t1.1	Cre17.g720800.t1.1		3066536,3066926,3067174,3067490,3067904,3068489,3069000,3069437,3069859,3070235,3071356	3066821,3067028,3067229,3067552,3067977,3068558,3069080,3069606,3070085,3071172,3073022	
chr17	3073166	3075089	3073303	3073910	+	Cre17.g720850.t1.2	Cre17.g720850.t1.2		3073166	3075089	
chr17	3075100	3080515	3075729	3080087	-	Cre17.g720900.t1.1	Cre17.g720900.t1.1		3080012,3079084,3078784,3077956,3077252,3076476,3076104,3075100	3080515,3079926,3078869,3078538,3077581,3077141,3076310,3075897	
chr17	3080613	3085117	3080786	3084597	+	Cre17.g720950.t1.1	Cre17.g720950.t1.1		3080613,3081048,3081376,3081667,3082115,3082664,3083196,3083600,3084090,3084489	3080932,3081126,3081498,3081754,3082233,3082756,3083361,3083682,3084188,3085117	Similar to steroid 5-alpha-reductase
chr17	3085376	3098563	3085674	3097794	+	Cre17.g721000.t1.2	Cre17.g721000.t1.2		3085376,3085956,3086369,3086638,3087001,3087394,3087866,3088247,3088697,3091422,3091791,3092244,3092574,3092924,3093333,3094367,3094959,3095226,3096517,3096934,3097308	3085677,3086087,3086410,3086730,3087183,3087537,3088026,3088359,3088815,3091544,3091980,3092361,3092714,3093045,3093507,3094532,3095024,3096333,3096644,3097164,3098563	
chr17	3098663	3101155	3100016	3101052	-	Cre17.g721150.t1.2	Cre17.g721150.t1.2		3101004,3100659,3100186,3098663	3101155,3100823,3100485,3100076	
chr17	3101296	3105047	3101497	3105025	+	Cre17.g721200.t1.2	Cre17.g721200.t1.2		3101296,3101733,3102145,3102489,3103270,3103594,3103816,3104221	3101668,3102083,3102366,3103118,3103440,3103713,3104076,3105047	
chr17	3105050	3109245	3106217	3109106	-	IFT38	Cre17.g721250.t1.2		3109084,3108901,3108618,3108117,3107517,3107189,3106788,3106387,3105050	3109245,3109012,3108831,3108329,3107690,3107337,3107016,3106548,3106274	Found in the flagellar proteome; component of IFT-B peripheral subcomplex; similar to clusterin-associated protein 1 CLUAP1 and cystic kidney disease gene qilin
chr17	3109346	3110228	3109447	3109820	+	ASA5	Cre17.g721300.t1.2		3109346	3110228	Mitochondrial ATP synthase associated protein 5; part of peripheral stalk involed in dimerization; unknown evolutionary origin [PMID: 11744727, PMID: 15710684]
chr17	3110476	3114465	3110722	3113772	-	Cre17.g721350.t1.2	Cre17.g721350.t1.2		3114370,3113653,3113380,3112979,3112696,3112358,3112061,3111536,3111036,3110476	3114465,3113838,3113436,3113026,3112784,3112449,3112159,3111646,3111132,3110832	
chr17	3114666	3121231	3114734	3120018	+	Cre17.g721400.t1.1	Cre17.g721400.t1.1		3114666,3114906,3115104,3115268,3115594,3115749,3116061,3118056,3119627,3119931	3114827,3114966,3115173,3115355,3115636,3115886,3117880,3119501,3119680,3121231	
chr17	3121426	3128838	3121994	3126556	+	NSS4	Cre17.g721450.t1.1		3121426,3121959,3122443,3122750,3123004,3123322,3123743,3124159,3124615,3125029,3125570,3126314	3121855,3122184,3122522,3122758,3123067,3123464,3123922,3124401,3124801,3125246,3125750,3128838	
chr17	3129587	3134098	3129665	3133156	+	STA2	Cre17.g721500.t1.2		3129587,3130392,3130727,3131058,3131428,3131825,3132539	3130021,3130581,3130861,3131216,3131615,3132360,3134098	
chr17	3134231	3137035	3136101	3136854	-	Cre17.g721517.t1.1	Cre17.g721517.t1.1		3136775,3136558,3134231	3137035,3136595,3136212	
chr17	3134231	3137035	3134619	3136854	-	Cre17.g721517.t2.1	Cre17.g721517.t2.1		3136775,3136558,3135632,3134719,3134231	3137035,3136595,3136212,3135518,3134619	
chr17	3137136	3138496	3137234	3137460	+	Cre17.g721553.t1.2	Cre17.g721553.t1.2		3137136	3138496	
chr17	3140260	3146845	3140972	3146606	-	Cre17.g721600.t1.1	Cre17.g721600.t1.1		3146412,3145576,3145211,3144780,3144267,3143908,3143379,3142929,3142583,3141675,3140260	3146845,3145648,3145266,3144888,3144335,3144009,3143540,3143111,3142708,3141815,3141125	
chr17	3146946	3152197	3147293	3151496	+	Cre17.g721650.t1.2	Cre17.g721650.t1.2		3146946,3148602,3149535,3149860,3150346,3150860,3151312	3148310,3149135,3149615,3149934,3150621,3151041,3152197	
chr17	3152248	3154719	3152297	3154020	+	CPLD44	Cre17.g721700.t1.2		3152248,3152847,3153230,3153629,3153963	3152484,3153034,3153394,3153751,3154719	
chr17	3154966	3164817	3155142	3164163	+	ELG9	Cre17.g721750.t1.1		3154966,3155373,3155905,3156362,3156615,3156843,3157047,3157495,3157933,3158290,3158508,3158802,3159130,3159414,3159862,3160155,3160522,3160913,3161103,3161441,3161925,3162298,3162782,3163040,3163483,3163943	3155232,3155520,3156126,3156453,3156684,3156901,3157130,3157546,3157981,3158308,3158605,3158866,3159227,3159466,3159972,3160217,3160568,3160953,3161171,3161557,3162023,3162397,3162842,3163217,3163652,3164817	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr17	3166539	3167975	3167182	3167672	-	Cre17.g721800.t1.2	Cre17.g721800.t1.2		3166539	3167975	
chr17	3168076	3178087	3168327	3177013	+	SSA16	Cre17.g721850.t1.2		3168076,3168591,3169269,3171339,3171687,3172078,3172428,3172835,3173367,3173891,3174242,3174595,3175022,3175383,3175675,3176080,3176354,3176826	3168420,3169012,3169706,3171499,3171802,3172143,3172634,3172916,3173499,3174005,3174335,3174689,3175153,3175556,3175866,3176137,3176522,3178087	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr17	3178638	3184099	3178753	3183674	+	COG5	Cre17.g721900.t1.2		3178638,3179626,3180047,3180520,3181024,3181409,3181886,3182575,3183027,3183442	3179389,3179715,3180223,3180674,3181180,3181584,3182374,3182728,3183217,3184099	Expressed protein. Similar to COG5/COD3; component of oligomeric golgi complex 5, involved in vesicle tethering and other Golgi functions
chr17	3184102	3189077	3185187	3188868	-	Cre17.g721950.t1.2	Cre17.g721950.t1.2		3188666,3188472,3188112,3187816,3187522,3187105,3186744,3186427,3186089,3185783,3185570,3184102	3189077,3188491,3188211,3187890,3187684,3187384,3186841,3186568,3186285,3185931,3185658,3185397	
chr17	3189348	3193456	3189752	3193152	-	MFT30	Cre17.g722000.t1.1		3193023,3192684,3192430,3192161,3191869,3191504,3191259,3190681,3190363,3190100,3189348	3193456,3192795,3192566,3192252,3191993,3191679,3191325,3190891,3190450,3190157,3189985	Solute carrier protein
chr17	3193548	3195399	3193632	3194925	+	Cre17.g722050.t1.1	Cre17.g722050.t1.1		3193548,3193787,3194460,3194847	3193692,3193849,3194531,3195399	
chr17	3193548	3195399	3193632	3194925	+	Cre17.g722050.t2.1	Cre17.g722050.t2.1		3193548,3193787,3194463,3194847	3193692,3193849,3194531,3195399	
chr17	3195978	3201419	3196174	3200693	+	SSA3	Cre17.g722100.t1.1		3195978,3196484,3196785,3197060,3197387,3197868,3198236,3198532,3198701,3199546,3199767,3200044,3200612	3196381,3196654,3196874,3197269,3197740,3198083,3198353,3198584,3199388,3199601,3199862,3200286,3201419	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr17	3195978	3201419	3196174	3200693	+	SSA3	Cre17.g722100.t2.1		3195978,3196484,3196785,3197060,3197868,3198236,3198532,3198698,3199546,3199767,3200044,3200612	3196381,3196654,3196874,3197269,3198083,3198353,3198584,3199388,3199601,3199862,3200286,3201419	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr17	3195978	3201419	3196174	3200693	+	SSA3	Cre17.g722100.t3.1		3195978,3196484,3196785,3197060,3197868,3198236,3198532,3198701,3199546,3199767,3200044,3200612	3196381,3196654,3196874,3197269,3198083,3198353,3198584,3199388,3199601,3199862,3200286,3201419	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr17	3201422	3206947	3202325	3206879	-	PKS3	Cre17.g722150.t1.2		3206788,3206614,3206441,3206007,3205762,3205405,3204325,3203799,3203559,3203226,3202961,3202597,3201422	3206947,3206717,3206524,3206119,3205810,3205486,3204440,3204118,3203637,3203381,3203118,3202750,3202418	Variant PKS3b, generated by alternative transcription start; N-terminus differs from PKS3a; Similar to chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
chr17	3207048	3208808	3207192	3207915	+	MRPL11	Cre17.g722200.t1.2		3207048,3207461,3207724	3207330,3207593,3208808	
chr17	3208937	3214237	3209543	3213956	-	Cre17.g722250.t1.1	Cre17.g722250.t1.1		3213755,3213563,3213213,3212871,3212535,3212196,3211972,3211668,3211127,3210549,3210208,3208937	3214237,3213633,3213339,3212951,3212617,3212277,3212006,3211780,3211467,3210969,3210311,3210020	
chr17	3214623	3217199	3214858	3216497	+	Cre17.g722300.t1.1	Cre17.g722300.t1.1		3214623,3215162,3215782,3216329	3214865,3215407,3216170,3217199	
chr17	3217202	3220087	3217819	3219933	-	RABL2	Cre17.g722350.t1.2		3219923,3219794,3219647,3219422,3218933,3218324,3217202	3220087,3219834,3219708,3219534,3219135,3218479,3217924	Distantly similar to a class of Rab-like proteins from mammals; IFT regulator
chr17	3220186	3222639	3220412	3221115	+	MOT25	Cre17.g722400.t1.2		3220186	3222639	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr17	3222642	3226587	3222663	3226149	-	Cre17.g722450.t1.1	Cre17.g722450.t1.1		3225798,3225444,3225093,3224721,3224348,3224049,3223801,3223009,3222642	3226587,3225546,3225264,3224893,3224437,3224148,3223814,3223641,3222821	
chr17	3226708	3229005	3226793	3228563	+	Cre17.g722500.t1.2	Cre17.g722500.t1.2		3226708,3227002,3227255,3227751,3228057,3228432	3226892,3227052,3227513,3227827,3228198,3229005	
chr17	3229032	3230267	3229846	3230051	-	Cre17.g722526.t1.1	Cre17.g722526.t1.1		3229032	3230267	
chr17	3230418	3232239	3231155	3231997	+	Cre17.g722550.t1.2	Cre17.g722550.t1.2		3230418,3231997	3231872,3232239	
chr17	3232288	3233969	3232843	3233057	+	Cre17.g722583.t1.1	Cre17.g722583.t1.1		3232288,3232675,3232838	3232481,3232715,3233969	
chr17	3235928	3240091	3238852	3239108	+	Cre17.g722616.t1.1	Cre17.g722616.t1.1		3235928,3236353,3236737,3238287,3238847	3236228,3236393,3236793,3238602,3240091	
chr17	3240261	3241917	3240990	3241822	-	Cre17.g722650.t1.2	Cre17.g722650.t1.2		3241334,3240261	3241917,3240990	
chr17	3242018	3244169	3242048	3243384	+	Cre17.g722675.t1.1	Cre17.g722675.t1.1		3242018,3242635,3243384	3242483,3243144,3244169	
chr17	3244425	3247987	3244948	3247853	-	Cre17.g722700.t1.2	Cre17.g722700.t1.2		3247847,3247478,3247139,3246656,3246238,3245828,3245535,3245214,3244425	3247987,3247739,3247201,3246876,3246320,3246086,3245652,3245367,3245030	
chr17	3248115	3250919	3248162	3249936	+	Cre17.g722750.t1.2	Cre17.g722750.t1.2		3248115,3249645	3248963,3250919	
chr17	3250966	3255834	3251225	3255441	+	MPPA1	Cre17.g722800.t1.2		3250966,3251761,3252118,3252488,3252735,3253310,3253732,3253997,3254286,3254642,3254937,3255281	3251525,3251827,3252191,3252535,3252902,3253467,3253814,3254100,3254450,3254712,3255062,3255834	Mitochondrial processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) (MAS2)
chr17	3255888	3258611	3256389	3257915	+	Cre17.g722851.t1.1	Cre17.g722851.t1.1		3255888,3256369,3256658,3256917,3257580,3257840	3256088,3256451,3256719,3257125,3257663,3258611	
chr17	3258808	3262109	3258936	3261664	+	Cre17.g722900.t1.1	Cre17.g722900.t1.1		3258808,3259129,3259515,3260339,3260980,3261385	3258968,3259269,3260014,3260685,3261123,3262109	
chr17	3262323	3264709	3262530	3264423	+	Cre17.g722950.t1.2	Cre17.g722950.t1.2		3262323,3263814	3263430,3264709	
chr17	3264712	3273017	3266309	3272843	-	Cre17.g723000.t1.1	Cre17.g723000.t1.1		3272686,3271857,3271168,3270389,3269253,3268711,3264712	3273017,3272206,3271518,3270932,3270253,3269081,3268575	
chr17	3273302	3287927	3274485	3287588	-	Cre17.g723050.t1.1	Cre17.g723050.t1.1		3287392,3287091,3286888,3286249,3285840,3285387,3285076,3284742,3284337,3283963,3282178,3281976,3276847,3274987,3274709,3273302	3287927,3287158,3286965,3286380,3286016,3285641,3285139,3284866,3284551,3284077,3283714,3282071,3281819,3276669,3274855,3274563	
chr17	3289312	3292927	3290383	3292475	-	Cre17.g723100.t1.2	Cre17.g723100.t1.2		3292222,3291949,3291665,3291240,3290921,3290615,3289312	3292927,3292010,3291732,3291348,3291028,3290760,3290399	
chr17	3293257	3298017	3293631	3297809	-	ERO1	Cre17.g723150.t1.1		3297746,3297524,3297190,3296853,3296433,3296156,3295703,3295226,3294814,3294339,3293930,3293257	3298017,3297646,3297265,3296947,3296598,3296229,3295799,3295520,3294985,3294519,3294086,3293713	Expressed Protein of endoplasmic reticulum oxidoreductin 1 (ERO1) family. Similar to conserved protein involved in redox reactions in the ER lumen.
chr17	3298148	3302399	3298343	3301907	+	FAP372	Cre17.g723200.t1.2		3298148,3298876,3299835,3300380,3300734,3301190,3301459,3301784	3298648,3299092,3299975,3300520,3300928,3301303,3301554,3302399	
chr17	3302401	3313947	3303164	3313309	-	CPE1	Cre17.g723250.t1.2		3313154,3312527,3311916,3311504,3310827,3310549,3310261,3309793,3309425,3309003,3308710,3308393,3308032,3307775,3307397,3306967,3306622,3306261,3305893,3305487,3305112,3304745,3304444,3303925,3303562,3302401	3313947,3312701,3312016,3311597,3310994,3310641,3310409,3310100,3309593,3309237,3308826,3308467,3308203,3307845,3307580,3307202,3306704,3306377,3306050,3305659,3305234,3304864,3304551,3304086,3303706,3303433	Metalloendopeptidase, M16 family, homologous to mitochondrial MPP; cleaves chloroplast transit peptide after import, probably in a two-step reaction (PMID: 12888578); the extended cTP of CPE must be cleaved to activate the enzyme
chr17	3314378	3324364	3314808	3323329	+	Cre17.g723300.t1.1	Cre17.g723300.t1.1		3314378,3315302,3315642,3316040,3316411,3316670,3317125	3314868,3315511,3315800,3316196,3316506,3316926,3324364	
chr17	3324347	3329585	3325207	3329318	-	SULTR2	Cre17.g723350.t1.2		3329121,3328801,3328311,3327837,3327394,3326788,3326362,3326060,3325704,3324347	3329585,3328869,3328605,3328103,3327625,3327167,3326556,3326186,3325918,3325525	similar to Arabidopsis Sultr4;1
chr17	3329802	3333249	3329899	3332210	+	Cre17.g723400.t1.2	Cre17.g723400.t1.2		3329802,3330390,3330693,3330849,3331071,3331417,3331764,3331979	3329955,3330478,3330713,3330885,3331225,3331554,3331846,3333249	
chr17	3337142	3346341	3337812	3345915	+	FAP13	Cre17.g723450.t1.1		3337142,3337687,3338477,3338962,3339486,3339809,3340533,3342148,3342612,3343588,3344096,3344600,3345366	3337477,3338155,3338589,3339198,3339613,3340396,3341960,3342337,3343307,3343885,3344411,3345137,3346341	Similar to notchless 1
chr17	3337142	3346341	3337812	3345915	+	FAP13	Cre17.g723450.t2.1		3337142,3337728,3338477,3338962,3339486,3339809,3340533,3342148,3342612,3343588,3344096,3344600,3345366	3337477,3338155,3338589,3339198,3339613,3340396,3341960,3342337,3343307,3343885,3344411,3345137,3346341	Similar to notchless 1
chr17	3346462	3359038	3346699	3358396	+	Cre17.g723500.t1.1	Cre17.g723500.t1.1		3346462,3346994,3347395,3347745,3348483,3348805,3349169,3349407,3349666,3349970,3350351,3350805,3351220,3351563,3351807,3352052,3352319,3352627,3353058,3353925,3354287,3354660,3354940,3355306,3355602,3355905,3356470,3356795,3357147,3357530,3357855,3358290	3346708,3347157,3347473,3348195,3348601,3348945,3349249,3349503,3349754,3350080,3350551,3350998,3351371,3351627,3351867,3352102,3352410,3352750,3353673,3354062,3354452,3354791,3355076,3355413,3355715,3356216,3356641,3356901,3357260,3357624,3357960,3359038	
chr17	3359286	3362211	3359694	3362137	-	CPLD4	Cre17.g723550.t1.2		3362111,3361815,3361418,3361125,3360635,3360250,3359286	3362211,3361979,3361629,3361207,3360755,3360413,3359856	Conserved in the Plant Lineage and Diatoms; inositol monophosphatase-related
chr17	3362408	3368081	3363031	3367310	-	IFT81	Cre17.g723600.t1.2		3367233,3367076,3366893,3366474,3365922,3365600,3365255,3364917,3364463,3364174,3363855,3363453,3362408	3368081,3367145,3366987,3366603,3366040,3365783,3365401,3365102,3364686,3364312,3364043,3363673,3363302	Component of core of IFT-B particle
chr17	3368170	3371811	3368808	3371726	-	ATO1	Cre17.g723650.t1.2		3371672,3371497,3371300,3371043,3370724,3370459,3370130,3369695,3369295,3368170	3371811,3371529,3371395,3371135,3370845,3370525,3370297,3369931,3369516,3369102	EC 2.3.1.9
chr17	3371932	3377253	3372135	3375814	+	Cre17.g723700.t1.1	Cre17.g723700.t1.1		3371932,3372402,3372605,3372829,3373251,3373527,3373764,3374931,3375447,3375728	3372172,3372440,3372670,3372902,3373313,3373640,3374736,3375275,3375542,3377253	
chr17	3377965	3379931	3378748	3379814	-	Cre17.g723750.t1.1	Cre17.g723750.t1.1		3379742,3379222,3379048,3378879,3377965	3379931,3379397,3379121,3378914,3378777	
chr17	3380042	3382373	3380183	3381443	+	Cre17.g723800.t1.2	Cre17.g723800.t1.2		3380042,3380452,3380739,3381023,3381160,3381365	3380270,3380514,3380840,3381079,3381240,3382373	
chr17	3382899	3386117	3383161	3385841	+	Cre17.g723850.t1.2	Cre17.g723850.t1.2		3382899,3383438,3383881,3384105,3384374,3384714	3383280,3383633,3383934,3384202,3384582,3386117	
chr17	3386172	3389952	3386914	3389528	+	FAP131	Cre17.g723900.t1.2		3386172,3387103,3387289,3387676,3387906,3388147,3388456,3388696,3389077,3389391	3386951,3387170,3387422,3387767,3387961,3388230,3388553,3388916,3389214,3389952	found in the flagellar proteome; in Matsuo et al. (2008), roc103 (rhythm of chloroplast) circadian rhythm mutant locus maps here; Similar to S926 Novel Nuclear-Encoded Protein
chr17	3389956	3394371	3390441	3394144	-	FAP397	Cre17.g723950.t1.1		3394114,3393569,3393308,3393080,3392737,3392551,3392364,3392008,3391752,3391413,3391241,3390990,3390666,3389956	3394371,3393742,3393360,3393149,3392950,3392610,3392448,3392200,3391843,3391623,3391319,3391139,3390896,3390530	
chr17	3394872	3399383	3395256	3399356	+	Cre17.g724000.t1.1	Cre17.g724000.t1.1		3394872,3395436,3395890	3395307,3395743,3399383	
chr17	3399406	3401411	3400209	3401098	-	Cre17.g724050.t1.1	Cre17.g724050.t1.1		3401271,3399406	3401411,3401099	
chr17	3401702	3403473	3401925	3403201	+	Cre17.g724100.t3.1	Cre17.g724100.t3.1		3401702,3402213,3402645,3402991,3403142	3402007,3402347,3402735,3402998,3403473	
chr17	3401552	3403473	3401925	3403201	+	Cre17.g724100.t1.1	Cre17.g724100.t1.1		3401552,3402213,3402645,3402991,3403142	3402007,3402347,3402735,3402998,3403473	
chr17	3401552	3403473	3402229	3403201	+	Cre17.g724100.t2.1	Cre17.g724100.t2.1		3401552,3402213,3402645,3402991,3403142	3401798,3402347,3402735,3402998,3403473	
chr17	3403522	3404773	3403683	3404651	+	Cre17.g724125.t1.1	Cre17.g724125.t1.1		3403522,3404586	3403933,3404773	
chr17	3404789	3412201	3405536	3411966	-	DRP3	Cre17.g724150.t1.1		3411882,3411614,3411099,3410871,3410621,3410280,3409900,3409520,3409298,3408953,3408618,3408245,3407776,3407381,3406803,3406555,3406271,3404789	3412201,3411700,3411259,3410966,3410728,3410386,3410053,3409676,3409359,3409073,3408743,3408372,3407947,3407557,3407177,3406671,3406350,3405939	Similar to Arabidopsis DRP3 group (ADL2), a Dynamin-type GTPase involved in mitochondrial division.
chr17	3412312	3416415	3412399	3415780	+	LAL1	Cre17.g724200.t1.2		3412312,3412582,3412850,3413080,3413404,3413780,3414153,3414548,3415019,3415266,3415597	3412447,3412660,3412902,3413199,3413616,3413884,3414314,3414719,3415122,3415433,3416415	contains an N-terminal La domain, two RRMs (RRM-3 at 318-423) and a very strong Nuclear Localization Signal; similar to At4g32720 which functions in Arabidopsis as a genuine La protein (PMID: 17459889); likely involved in stabilization and processsing of PolIII- and PolII-transcribed non coding RNAs (tRNAs, snRNAs, U3 snoRNA)
chr17	3416566	3418181	3417138	3417998	-	Cre17.g724250.t1.1	Cre17.g724250.t1.1		3417956,3417397,3416566	3418181,3417795,3417261	
chr17	3418236	3419161	3418272	3418608	-	Cre17.g724276.t1.1	Cre17.g724276.t1.1		3418415,3418236	3419161,3418349	
chr17	3419254	3421201	3419542	3420866	-	PSAK	Cre17.g724300.t1.2		3420821,3420471,3419943,3419254	3421201,3420533,3420081,3419637	Chloroplast precursor
chr17	3421306	3423991	3421854	3423879	-	POA5	Cre17.g724350.t1.2		3423783,3423610,3423426,3423044,3422801,3422386,3421306	3423991,3423690,3423539,3423151,3422859,3422560,3421947	20S proteasome alpha subunit E (type 5)
chr17	3424352	3427186	3424912	3427054	-	FAP257	Cre17.g724400.t1.2		3427015,3426631,3426366,3426006,3425827,3425307,3424352	3427186,3426707,3426493,3426152,3425887,3425528,3425099	Flagellar Associated Protein, found in the flagellar proteome
chr17	3427266	3429861	3427377	3429745	-	Cre17.g724450.t1.1	Cre17.g724450.t1.1		3429394,3428674,3428150,3427266	3429861,3429312,3428545,3427989	
chr17	3430036	3438181	3431601	3437351	-	Cre17.g724500.t1.1	Cre17.g724500.t1.1		3437792,3437267,3436406,3435993,3435468,3433751,3433419,3432662,3432436,3430036	3438181,3437548,3437085,3436298,3435801,3435274,3433565,3433257,3432517,3432336	
chr17	3438281	3439853	3438382	3439185	+	DIP13	Cre17.g724550.t1.2		3438281,3438538,3439041	3438434,3438677,3439853	Deflagellation inducible protein, 13 kDa [gi:4689324, PMID: 12643]; found in the flagellar proteome; similar to Sjogren's syndrome nuclear autoantigen 1;  13KD
chr17	3439856	3444307	3440347	3444021	-	PAO2	Cre17.g724600.t1.2		3443974,3443761,3443387,3443095,3442744,3442516,3442342,3442163,3441681,3441461,3441258,3441050,3440692,3439856	3444307,3443873,3443606,3443157,3442918,3442622,3442370,3442200,3441814,3441551,3441333,3441108,3440910,3440569	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr17	3439856	3444148	3440347	3444021	-	PAO2	Cre17.g724600.t2.1		3443974,3443761,3443387,3443095,3442744,3442516,3442342,3442163,3441681,3441461,3441258,3441050,3440692,3439856	3444148,3443873,3443606,3443157,3442918,3442622,3442370,3442200,3441814,3441551,3441333,3441108,3440910,3440569	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr17	3444522	3448173	3444828	3447902	+	Cre17.g724650.t1.2	Cre17.g724650.t1.2		3444522,3445205,3445606,3446127,3446502,3446739,3447143,3447497	3444884,3445386,3445943,3446369,3446586,3446908,3447289,3448173	
chr17	3448178	3452601	3448749	3452492	-	Cre17.g724700.t1.1	Cre17.g724700.t1.1		3452317,3451968,3451789,3451438,3451183,3450972,3450757,3450527,3450288,3449981,3449813,3449608,3449232,3448178	3452601,3452169,3451851,3451612,3451280,3451030,3450764,3450591,3450350,3450074,3449879,3449666,3449450,3448971	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr17	3452782	3455481	3453118	3454637	+	Cre17.g724750.t1.2	Cre17.g724750.t1.2		3452782,3453451,3453699,3454001,3454216,3454543	3453148,3453559,3453772,3454075,3454394,3455481	
chr17	3455538	3460279	3455881	3460130	-	Cre17.g724800.t1.1	Cre17.g724800.t1.1		3460100,3459958,3459792,3459449,3459269,3458514,3458252,3457873,3455538	3460279,3460011,3459866,3459658,3459334,3459064,3458360,3458153,3457775	
chr17	3460372	3464042	3460535	3463411	+	Cre17.g724850.t1.2	Cre17.g724850.t1.2		3460372,3460692,3460868,3461153,3461940,3462425,3463055,3463396	3460601,3460739,3460974,3461531,3462210,3462825,3463255,3464042	
chr17	3464096	3466531	3464703	3465853	-	Cre17.g724873.t1.2	Cre17.g724873.t1.2		3465610,3465037,3464096	3466531,3465532,3464703	
chr17	3471262	3475273	3471363	3475034	+	Cre17.g724900.t1.2	Cre17.g724900.t1.2		3471262,3471504,3471861,3472603,3474272	3471435,3471741,3472471,3474075,3475273	
chr17	3475276	3483411	3476547	3483338	-	Cre17.g724950.t1.2	Cre17.g724950.t1.2		3483218,3482888,3482686,3482265,3482065,3481468,3481169,3480919,3480642,3479903,3479663,3479235,3478835,3477958,3477731,3475276	3483411,3483005,3482744,3482479,3482155,3481885,3481354,3480974,3480725,3480472,3479703,3479369,3478935,3478634,3477829,3477597	
chr17	3485443	3489755	3487486	3489630	-	Cre17.g725000.t1.1	Cre17.g725000.t1.1		3489499,3489030,3488771,3485443	3489755,3489098,3488888,3488638	
chr17	3493196	3495414	3494191	3495158	-	UBL5	Cre17.g725050.t1.2		3495119,3493196	3495414,3494374	
chr17	3493196	3495414	3493997	3495158	-	UBL5	Cre17.g725050.t2.1		3495119,3494136,3493196	3495414,3494374,3493997	
chr17	3495532	3507153	3495665	3506769	+	Cre17.g725100.t1.2	Cre17.g725100.t1.2		3495532,3496206,3496584,3497095,3497636,3497998,3498310,3498786,3499075,3499606,3499838,3500268,3500695,3501223,3502318,3502663,3502959,3503276,3503623,3504070,3504443,3505023,3505464,3505989,3506496	3495743,3496289,3496697,3497193,3497761,3498108,3498396,3498893,3499197,3499650,3499956,3500316,3500843,3501316,3502392,3502759,3502990,3503368,3503734,3504132,3504552,3505169,3505567,3506145,3507153	
chr17	3507202	3516163	3507300	3514907	+	Cre17.g725150.t1.2	Cre17.g725150.t1.2		3507202,3507522,3507718,3508033,3508644,3509041,3509473,3509727,3510566,3510765,3511918,3512233,3512581,3512860,3513165,3513401,3513762,3514137,3514350,3514622	3507458,3507583,3507762,3508336,3508800,3509154,3509610,3510449,3510646,3511646,3512082,3512346,3512653,3513044,3513243,3513642,3514010,3514242,3514486,3516163	
chr17	3516230	3524200	3516938	3523930	-	Cre17.g725200.t1.2	Cre17.g725200.t1.2		3523784,3523491,3523323,3522845,3522500,3522249,3521905,3520960,3520764,3519807,3519519,3519301,3519111,3518802,3518601,3518202,3517821,3517591,3517349,3516230	3524200,3523552,3523367,3523148,3522656,3522362,3522042,3521682,3520844,3520649,3519683,3519414,3519183,3518986,3518679,3518443,3518069,3517696,3517485,3517235	
chr17	3526835	3529770	3527734	3529511	-	Cre17.g725250.t1.1	Cre17.g725250.t1.1		3528793,3528408,3526835	3529770,3528609,3528236	
chr17	3533285	3538480	3534532	3538376	-	Cre17.g725301.t1.1	Cre17.g725301.t1.1		3538303,3538124,3537967,3537756,3537389,3536366,3536162,3535827,3535683,3535457,3535126,3534736,3533285	3538480,3538216,3538013,3537827,3537563,3536856,3536242,3536006,3535727,3535549,3535326,3534909,3534598	
chr17	3538611	3542071	3538673	3541755	+	GLC2B	Cre17.g725350.t1.1		3538611,3538960,3539124,3539457,3539977,3540233,3540674,3541225	3538881,3539055,3539357,3539647,3540051,3540359,3540994,3542071	
chr17	3538611	3542071	3538673	3541755	+	GLC2B	Cre17.g725350.t2.1		3538611,3538960,3539124,3539457,3539977,3540233,3541225	3538881,3539055,3539357,3539647,3540051,3540359,3542071	
chr17	3542371	3543282	3542683	3543002	+	Cre17.g725376.t1.1	Cre17.g725376.t1.1		3542371	3543282	
chr17	3543380	3544500	3543843	3544437	-	Cre17.g725400.t1.2	Cre17.g725400.t1.2		3544331,3544128,3543380	3544500,3544200,3544039	
chr17	3544611	3559865	3544858	3558940	+	Cre17.g725450.t1.1	Cre17.g725450.t1.1		3544611,3545425,3545770,3546217,3547199,3547702,3548058,3549026,3549402,3549730,3550163,3550943,3551424,3553480,3554277,3554711,3555336,3556098,3556490,3557021,3557510,3558334	3545122,3545586,3545872,3546967,3547418,3547791,3548441,3549145,3549575,3550020,3550567,3551165,3553249,3553944,3554459,3555172,3555758,3556211,3556639,3557094,3557603,3559865	
chr17	3560149	3562550	3561532	3562475	-	Cre17.g725500.t1.2	Cre17.g725500.t1.2		3562393,3562111,3560149	3562550,3562188,3561741	
chr17	3562655	3571790	3563946	3571400	-	GLD1	Cre17.g725550.t1.2		3571539,3571136,3570759,3568325,3568009,3567615,3566685,3566377,3566035,3565508,3564970,3564483,3562655	3571790,3571413,3570977,3568411,3568092,3567752,3566837,3566460,3566123,3565570,3565085,3564570,3564061	Putative glucose-6-phosphate-1-dehydrogenase, cytosolic, based on similarity to Chlorella vulgaris cytosolic G6P DH (gi:21262179)
chr17	3572125	3577790	3572870	3577771	-	Cre17.g725600.t1.1	Cre17.g725600.t1.1		3577557,3577284,3576894,3576367,3575973,3575697,3575131,3574802,3573982,3573389,3572125	3577790,3577417,3577079,3576711,3576059,3575785,3575316,3574954,3574608,3573841,3572870	
chr17	3577843	3581580	3578101	3581470	-	Cre17.g725650.t1.1	Cre17.g725650.t1.1		3581009,3580410,3579878,3579324,3578620,3577843	3581580,3580580,3579986,3579449,3578834,3578393	
chr17	3581681	3584582	3581767	3584044	+	Cre17.g725700.t1.1	Cre17.g725700.t1.1		3581681,3582268,3582978,3583431,3583821,3584044	3581767,3582509,3583347,3583524,3583886,3584582	
chr17	3581681	3584582	3581767	3584044	+	Cre17.g725700.t2.1	Cre17.g725700.t2.1		3581681,3582268,3582978,3583431,3583821,3584044	3581767,3582509,3583225,3583524,3583886,3584582	
chr17	3581681	3584582	3581767	3584044	+	Cre17.g725700.t3.1	Cre17.g725700.t3.1		3581681,3582268,3582978,3583821,3584044	3581767,3582509,3583524,3583886,3584582	
chr17	3584761	3588632	3584986	3587624	+	Cre17.g725750.t1.2	Cre17.g725750.t1.2		3584761,3585268,3585663	3585113,3585414,3588632	
chr17	3589595	3590730	3589976	3590377	-	Cre17.g725800.t1.2	Cre17.g725800.t1.2		3590331,3589595	3590730,3590107	
chr17	3590785	3593480	3591454	3593443	-	Cre17.g725851.t1.1	Cre17.g725851.t1.1		3593407,3593172,3592119,3590785	3593480,3593300,3592757,3591847	
chr17	3595615	3601750	3596389	3601689	-	Cre17.g725900.t1.1	Cre17.g725900.t1.1		3601344,3601053,3600755,3600473,3600019,3599666,3599299,3598927,3598512,3598076,3597453,3597174,3596813,3595615	3601750,3601142,3600875,3600580,3600272,3599797,3599436,3599076,3598586,3598307,3597950,3597235,3596995,3596566	
chr17	3601861	3607222	3602272	3606694	+	CSR13	Cre17.g725950.t1.1		3601861,3602214,3602564,3603357,3603728,3604040,3604308,3604557,3604776,3605171,3605609,3606130,3606538	3602149,3602306,3602999,3603447,3603753,3604124,3604372,3604609,3604849,3605336,3605757,3606303,3607222	
chr17	3601861	3607222	3602272	3606694	+	CSR13	Cre17.g725950.t2.1		3601861,3602564,3603357,3603728,3604040,3604308,3604557,3604776,3605171,3605609,3606130,3606538	3602306,3602999,3603447,3603753,3604124,3604372,3604609,3604849,3605336,3605757,3606303,3607222	
chr17	3607224	3609660	3607642	3609525	-	PAP3	Cre17.g726000.t1.2		3609515,3609200,3608669,3608193,3607224	3609660,3609366,3608987,3608416,3607801	Belongs to class-II Ntrs; shows the Glu287 residue typical of tRNA CCA-nucleotidyl transferases; similar to AtNtr3 (At1g22660); predicted organellar; gene model error: the gene is  split between two models, with an intervening ubiquitin carboxyl-terminal hydrolase on opposite strand; this is the C-terminal model
chr17	3609761	3612621	3609801	3612250	+	Cre17.g726050.t1.2	Cre17.g726050.t1.2		3609761,3610658,3610904,3611236,3611617,3611927	3610446,3610750,3611103,3611404,3611734,3612621	This gene lies in a long intron of the PAP3 gene on the other strand
chr17	3612625	3615809	3612697	3615633	-	PAP3	Cre17.g726100.t1.2		3615072,3614282,3613789,3613350,3612985,3612625	3615809,3614455,3613881,3613407,3613076,3612703	Belongs to class-II Ntrs; shows the Glu287 residue typical of tRNA CCA-nucleotidyl transferases; similar to AtNtr3 (At1g22660); conserved in Viridiplantae; predicted organellar; gene model error: the gene is  split between two models, with an intervening ubiquitin carboxyl-terminal hydrolase on opposite strand. This is the N-terminal model, and it lacks 18 AA at the start of the protein MQIIALTASCFATACTRY
chr17	3615911	3623000	3616238	3622597	+	Cre17.g726150.t1.1	Cre17.g726150.t1.1		3615911,3616439,3616976,3617393,3617666,3618056,3618438,3618877,3619262,3619415,3619859,3620068,3620488,3620922,3621314,3622065,3622408	3616272,3616815,3617092,3617482,3617707,3618178,3618556,3619057,3619286,3619632,3619907,3620217,3620603,3620999,3621501,3622200,3623000	
chr17	3623005	3629060	3625785	3628390	-	Cre17.g726200.t1.2	Cre17.g726200.t1.2		3628903,3628618,3623005	3629060,3628692,3628502	
chr17	3629112	3631500	3629780	3631204	-	ATP12	Cre17.g726250.t1.2		3631319,3631105,3630908,3630612,3630345,3630101,3629112	3631500,3631218,3630973,3630716,3630468,3630193,3629935	Putative assembly factor 2 for the F1 component of the mitochondrial ATP synthase complex; homolog of yeast protein ATP12 (named ATPAF2 in mammals) [PMID: 182697; PMID: 1141595]. N-terminal mitochondrial targeting sequence predicted by TargetP. Has mult
chr17	3631645	3633068	3631826	3632166	+	MRPS14	Cre17.g726300.t1.1		3631645	3633068	
chr17	3633374	3637510	3634608	3637133	-	Cre17.g726350.t1.1	Cre17.g726350.t1.1		3637221,3635942,3635202,3633374	3637510,3637137,3635628,3634922	
chr17	3637631	3640752	3638094	3639802	+	Cre17.g726400.t1.1	Cre17.g726400.t1.1		3637631,3638042,3638172,3638573,3638980,3639444	3637937,3638097,3638312,3638682,3639135,3640752	
chr17	3640808	3641920	3641252	3641802	-	Cre17.g726450.t1.2	Cre17.g726450.t1.2		3640808	3641920	
chr17	3642021	3647062	3642194	3646482	+	ORC4	Cre17.g726500.t1.2		3642021,3642815,3643438,3643954,3644460,3644931,3645417,3645753,3646082,3646381	3642572,3643161,3643534,3644085,3644762,3645143,3645512,3645836,3646157,3647062	Homologous to eukaryotic ORC4, DNA replication control protein; ts-lethal mutant was isolated (PMID 29743196)
chr17	3647065	3649680	3649375	3649541	-	Cre17.g726526.t1.1	Cre17.g726526.t1.1		3647065	3649680	
chr17	3649825	3653800	3650491	3653159	-	Cre17.g726550.t1.1	Cre17.g726550.t1.1		3653093,3652934,3649825	3653800,3652945,3652792	
chr17	3655220	3662880	3656184	3662178	-	Cre17.g726600.t1.2	Cre17.g726600.t1.2		3661878,3660152,3656318,3655220	3662880,3661736,3659668,3656234	
chr17	3655220	3659790	3656184	3659706	-	Cre17.g726600.t2.1	Cre17.g726600.t2.1		3656318,3655220	3659790,3656234	
chr17	3661595	3662880	3661708	3662178	-	Cre17.g726600.t3.1	Cre17.g726600.t3.1		3661864,3661595	3662880,3661736	
chr17	3664408	3668130	3665531	3668017	-	CGL96	Cre17.g726650.t1.2		3667868,3667086,3666501,3665929,3664408	3668130,3667246,3666619,3666077,3665544	
chr17	3668239	3674922	3668383	3674464	+	Cre17.g726700.t1.1	Cre17.g726700.t1.1		3668239,3668758,3669070,3669466,3669963,3670382,3670648,3671101,3671702,3672215,3672483,3672842,3673259,3673621,3674356	3668515,3668940,3669251,3669692,3670126,3670487,3670844,3671283,3671950,3672257,3672638,3673095,3673447,3673914,3674922	
chr17	3668239	3674922	3668383	3674464	+	Cre17.g726700.t2.1	Cre17.g726700.t2.1		3668239,3668758,3669070,3669466,3669963,3670382,3670648,3671101,3671702,3672215,3672483,3672845,3673259,3673621,3674356	3668515,3668940,3669251,3669692,3670126,3670487,3670844,3671283,3671950,3672257,3672638,3673095,3673447,3673914,3674922	
chr17	3674937	3678190	3675953	3678082	-	SHKA1	Cre17.g726750.t1.2		3677845,3676406,3674937	3678190,3677645,3675985	3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase (EC 2.5.1.54); predicted mitochondrial by Target-P, but plastidic by homology
chr17	3678311	3681574	3678542	3681139	+	Cre17.g726800.t1.2	Cre17.g726800.t1.2		3678311,3678833,3679079,3679310,3679526,3680676,3681043	3678686,3678940,3679156,3679407,3680432,3680843,3681574	
chr17	3681691	3685322	3681872	3684767	+	Cre17.g726850.t1.2	Cre17.g726850.t1.2		3681691,3682285,3682680	3682056,3682431,3685322	
chr17	3686002	3688840	3686284	3688713	-	Cre17.g726900.t1.2	Cre17.g726900.t1.2		3688608,3688241,3687335,3686966,3686676,3686002	3688840,3688397,3687981,3687150,3686764,3686442	
chr17	3689051	3699222	3689428	3699016	+	Cre17.g726950.t1.1	Cre17.g726950.t1.1		3689051,3689635,3690016,3690429,3691365,3691839,3692206,3692691,3696224,3696430,3696939,3697556	3689458,3689811,3690208,3690540,3691430,3691950,3692599,3695944,3696273,3696721,3697458,3699222	
chr17	3699225	3701800	3699930	3701313	-	Cre17.g726983.t1.1	Cre17.g726983.t1.1		3701247,3701054,3700717,3700274,3699225	3701800,3701125,3700814,3700396,3700012	
chr17	3699225	3701560	3699930	3701313	-	Cre17.g726983.t2.1	Cre17.g726983.t2.1		3701247,3701054,3700717,3700274,3699225	3701560,3701125,3700814,3700396,3700012	
chr17	3702280	3709491	3702328	3709234	+	Cre17.g727050.t1.1	Cre17.g727050.t1.1		3702280,3702530,3704619,3705285,3705524,3705911,3706725,3707061,3707426,3707890,3708270,3708701,3708948	3702425,3704397,3704924,3705347,3705639,3706388,3706872,3707161,3707639,3708002,3708356,3708744,3709491	
chr17	3709517	3711841	3710673	3711745	-	Cre17.g727100.t1.2	Cre17.g727100.t1.2		3711135,3709517	3711841,3710798	
chr17	3711970	3715571	3712198	3714916	+	Cre17.g727150.t1.1	Cre17.g727150.t1.1		3711970,3712455,3713007	3712261,3712876,3715571	
chr17	3715650	3719499	3715816	3718430	+	Cre17.g727201.t1.1	Cre17.g727201.t1.1		3715650	3719499	
chr17	3719580	3723632	3720363	3722680	+	Cre17.g727250.t1.1	Cre17.g727250.t1.1		3719580,3720213,3721806	3719912,3721646,3723632	
chr17	3724590	3728841	3724986	3728346	+	NFO2	Cre17.g727300.t1.2		3724590,3725134,3725478,3725748,3726057,3726516,3727001,3727448,3727772,3728026,3728245	3725000,3725287,3725536,3725851,3726244,3726758,3727086,3727554,3727818,3728098,3728841	Possible N-ethylmaleimide reductase
chr17	3728844	3730558	3728975	3729171	-	Cre17.g727326.t1.1	Cre17.g727326.t1.1		3730410,3729993,3728844	3730558,3730140,3729845	
chr17	3730690	3732121	3731137	3731943	+	MRPL23	Cre17.g727350.t1.2		3730690,3730997,3731547	3730878,3731227,3732121	
chr17	3732123	3735954	3732828	3735851	-	HRP8	Cre17.g727400.t1.1		3735790,3735280,3735057,3734806,3734560,3734247,3733888,3733475,3733209,3732983,3732123	3735954,3735400,3735189,3734817,3734594,3734265,3733985,3733575,3733316,3733083,3732843	cell wall protein; contains (hydroxy)proline-rich (HR) domain with (SP)n repeats
chr17	3736050	3740180	3736401	3739671	+	Cre17.g727450.t1.2	Cre17.g727450.t1.2		3736050,3736848,3737541,3738171,3738644,3738992,3739407	3736543,3737255,3737992,3738266,3738727,3739165,3740180	
chr17	3740284	3744129	3740709	3743905	-	Cre17.g727500.t1.2	Cre17.g727500.t1.2		3743884,3743546,3743168,3742930,3742493,3742106,3741740,3741281,3741047,3740284	3744129,3743647,3743251,3743025,3742570,3742159,3741907,3741325,3741132,3740842	
chr17	3744176	3751429	3744995	3751147	-	Cre17.g727550.t1.1	Cre17.g727550.t1.1		3750876,3750509,3744176	3751429,3750598,3750352	
chr17	3751580	3779301	3751811	3778532	+	Cre17.g727600.t1.1	Cre17.g727600.t1.1		3751580,3752314,3752629,3753064,3753871,3754176,3758069,3758443,3759789,3772256,3772646,3773000,3773325,3775467,3775786,3776109,3776757,3777101,3777533	3751905,3752417,3752715,3753702,3753996,3757868,3758224,3759660,3772062,3772419,3772801,3773143,3775268,3775547,3775908,3776531,3776867,3777346,3779301	
chr17	3779304	3786379	3779661	3786352	-	ATM2	Cre17.g727650.t1.1		3786250,3785293,3784784,3784188,3783857,3783449,3783112,3782770,3782288,3781777,3781472,3781073,3780722,3780363,3780020,3779304	3786379,3786043,3785043,3784340,3783962,3783605,3783244,3782829,3782395,3781973,3781571,3781138,3780858,3780468,3780113,3779804	half-size ABC transporter, related to mitochondrial proteins: A. thaliana ATM3, human ABC7, yeast ATM1, PMID: 15710683
chr17	3786490	3793231	3786767	3792185	+	HEL65	Cre17.g727700.t1.1		3786490,3787233,3787505,3787778,3788073,3788351,3788705,3789123,3789502,3790269,3790891,3791156	3786905,3787340,3787588,3787882,3788153,3788521,3788868,3789309,3789591,3790505,3790977,3793231	
chr17	3793258	3798329	3795057	3797536	-	Cre17.g727750.t1.1	Cre17.g727750.t1.1		3797257,3795935,3793258	3798329,3797092,3795681	
chr17	3800519	3810369	3801514	3809744	-	Cre17.g727801.t1.1	Cre17.g727801.t1.1		3810035,3809507,3809112,3808771,3808499,3808168,3807933,3807655,3807456,3807194,3806787,3804039,3803671,3800519	3810369,3809746,3809180,3808855,3808576,3808245,3807968,3807769,3807492,3807278,3806906,3806438,3803912,3803410	
chr17	3810909	3819399	3811428	3818916	-	Cre17.g727850.t1.1	Cre17.g727850.t1.1		3818771,3817884,3814042,3810909	3819399,3818492,3817691,3813786	
chr17	3819464	3829929	3819737	3829525	-	Cre17.g727900.t1.1	Cre17.g727900.t1.1		3829428,3828855,3828491,3828189,3827770,3827370,3825782,3825469,3819464	3829929,3828949,3828589,3828263,3827879,3827517,3827074,3825537,3825227	
chr17	3830480	3840673	3830720	3840005	+	RPN2	Cre17.g727950.t1.1		3830480,3830993,3831396,3831899,3832212,3832756,3833183,3833618,3834205,3834736,3835046,3835496,3835787,3836314,3836826,3837282,3837875,3838208,3838641,3838961,3839223,3839714	3830813,3831103,3831501,3832016,3832389,3832890,3833345,3833768,3834417,3834828,3835176,3835565,3835911,3836446,3836999,3837408,3837961,3838347,3838727,3839036,3839525,3840673	26S proteasome regulatory complex, base subcomplex, non-ATPase regulatory RPN2 (subunit 1)
chr17	3840720	3842061	3840735	3841558	+	Cre17.g728000.t1.2	Cre17.g728000.t1.2		3840720,3841069,3841313	3840757,3841164,3842061	
chr17	3842682	3845119	3843359	3844915	-	Cre17.g728050.t1.2	Cre17.g728050.t1.2		3844357,3842682	3845119,3843359	
chr17	3845909	3851009	3846537	3850939	-	Cre17.g728100.t1.2	Cre17.g728100.t1.2		3850700,3850484,3850135,3849695,3849132,3848610,3848297,3847824,3847538,3847156,3845909	3851009,3850538,3850329,3849758,3849256,3848690,3848415,3847992,3847624,3847229,3846763	
chr17	3851140	3853351	3851350	3852449	+	YKT6	Cre17.g728150.t1.2		3851140,3852245	3851755,3853351	Expressed Protein. Similar to YKT6 R-SNAREs, involved in Golgi/Endosomal trafficking.
chr17	3853354	3856729	3853484	3856648	-	Cre17.g728200.t1.1	Cre17.g728200.t1.1		3856459,3856314,3855921,3855607,3855266,3854063,3853354	3856729,3856360,3856182,3855707,3855389,3854299,3853784	
chr17	3857199	3892154	3857753	3891886	-	Cre17.g728250.t1.1	Cre17.g728250.t1.1		3891685,3891147,3890734,3890336,3890058,3889380,3889175,3888790,3888337,3887759,3887214,3886827,3886242,3885744,3885176,3884797,3884208,3883066,3882208,3881830,3881448,3880725,3877356,3876760,3876322,3875981,3875624,3875263,3874907,3874407,3874076,3873648,3873322,3871809,3871326,3870863,3870428,3869526,3869024,3868435,3868179,3867278,3866987,3866421,3865891,3865081,3864338,3863786,3863414,3862696,3862137,3861775,3861284,3860962,3860210,3859909,3859645,3859126,3858436,3857199	3892154,3891254,3890823,3890493,3890196,3889726,3889239,3888909,3888571,3888116,3887432,3887048,3886574,3886118,3885454,3884939,3884521,3884054,3882884,3882039,3881587,3881218,3880523,3877209,3876617,3876121,3875780,3875384,3875081,3874717,3874193,3873869,3873406,3873010,3871611,3871075,3870625,3870168,3869356,3868523,3868264,3868024,3867077,3866809,3866225,3865610,3864945,3864122,3863556,3863233,3862315,3861912,3861409,3861010,3860593,3860027,3859708,3859468,3858848,3858271	
chr17	3892219	3902284	3892767	3902166	-	FAP226	Cre17.g728300.t1.1		3902127,3901868,3901640,3901248,3900979,3900674,3900410,3900080,3899670,3899415,3898933,3898639,3898424,3898079,3897870,3897626,3897291,3897022,3896701,3896458,3896157,3895607,3895303,3894889,3894512,3894162,3893793,3893430,3892219	3902284,3901962,3901710,3901292,3901034,3900708,3900472,3900173,3899786,3899488,3899056,3898707,3898516,3898240,3897919,3897680,3897391,3897187,3896801,3896512,3896198,3895711,3895410,3895010,3894605,3894239,3893935,3893535,3893160	Flagellar Associated Protein, found in the flagellar proteome; Similar to Calpain cysteine protease
chr17	3902455	3905386	3903199	3905022	+	Cre17.g728350.t1.1	Cre17.g728350.t1.1		3902455,3903139,3903571,3904025,3904420,3904681,3904953	3902712,3903403,3903612,3904144,3904496,3904759,3905386	
chr17	3905394	3922524	3905682	3922456	-	Cre17.g728400.t1.1	Cre17.g728400.t1.1		3922385,3921499,3920853,3920258,3919549,3919229,3918886,3918505,3917710,3917459,3916961,3916661,3916376,3916032,3915589,3915243,3914856,3914541,3913682,3913319,3912599,3911688,3911414,3911156,3910732,3910360,3909727,3909154,3908077,3907506,3906747,3906136,3905394	3922524,3922183,3920912,3920429,3920060,3919331,3918923,3918585,3918141,3917533,3917266,3916777,3916452,3916148,3915688,3915303,3915064,3914670,3914377,3913379,3913049,3912219,3911484,3911205,3910857,3910473,3910187,3909212,3908166,3907612,3906894,3906437,3905788	
chr17	3905394	3922524	3905682	3922456	-	Cre17.g728400.t2.1	Cre17.g728400.t2.1		3922385,3921499,3920853,3920258,3919549,3919229,3918886,3918505,3917710,3917459,3916961,3916661,3916376,3916032,3915589,3915243,3914856,3914541,3913682,3913319,3912599,3911688,3911414,3911156,3910732,3910360,3909727,3909154,3908077,3907506,3906747,3906136,3905394	3922524,3922183,3920912,3920426,3920060,3919331,3918923,3918585,3918141,3917533,3917266,3916777,3916452,3916148,3915688,3915303,3915064,3914670,3914377,3913379,3913049,3912219,3911484,3911205,3910857,3910473,3910187,3909212,3908166,3907612,3906894,3906437,3905788	
chr17	3922619	3941374	3923664	3941259	-	Cre17.g728450.t1.2	Cre17.g728450.t1.2		3941225,3939666,3938534,3937707,3936718,3935669,3934319,3933847,3933408,3932573,3932308,3929736,3929193,3927937,3927633,3927269,3926048,3925771,3925466,3925044,3924728,3924160,3922619	3941374,3940672,3939304,3938273,3937557,3936523,3935440,3934103,3933574,3933272,3932402,3932039,3929404,3929010,3927714,3927431,3926996,3925845,3925488,3925235,3924812,3924348,3923922	
chr17	3941429	3944964	3942373	3944615	-	Cre17.g728483.t1.1	Cre17.g728483.t1.1		3944229,3943580,3943237,3942945,3942728,3941429	3944964,3943771,3943460,3943122,3942776,3942529	
chr17	3941429	3944964	3943575	3944615	-	Cre17.g728483.t2.1	Cre17.g728483.t2.1		3944229,3941429	3944964,3943771	
chr17	3945115	3949266	3945505	3948135	+	Cre17.g728550.t1.2	Cre17.g728550.t1.2		3945115,3945791,3946152,3946672	3945599,3945910,3946484,3949266	
chr17	3949269	3953524	3950862	3953146	-	Cre17.g728600.t1.2	Cre17.g728600.t1.2		3952874,3952402,3951868,3951211,3949269	3953524,3952513,3951986,3951322,3950949	
chr17	3953625	3961840	3953830	3961331	+	FAP196	Cre17.g728650.t1.1		3953625,3953980,3954311,3954647,3955108,3956132,3956482,3956928,3957390,3958110,3958570,3958862,3959564,3960012,3960549,3960881,3961187	3953865,3954076,3954376,3954735,3955188,3956204,3956610,3957053,3957622,3958251,3958657,3958994,3959702,3960125,3960626,3960970,3961840	Flagellar Associated Protein; found in the flagellar proteome; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr17	3962015	3974060	3962513	3973598	+	Cre17.g728700.t1.1	Cre17.g728700.t1.1		3962015,3962489,3962950,3963539,3963812,3964488,3964963,3965372,3965680,3966142,3966479,3966803,3967137,3967611,3968678,3968987,3970409,3970764,3971091,3971576,3972184,3972651,3973044,3973517	3962306,3962555,3963274,3963603,3964249,3964695,3965096,3965480,3965780,3966214,3966606,3966868,3967271,3968479,3968819,3970081,3970493,3970834,3971160,3971706,3972282,3972794,3973184,3974060	
chr17	3974807	3979694	3976104	3979010	-	Cre17.g728750.t1.2	Cre17.g728750.t1.2		3979127,3978895,3978019,3977662,3977281,3976954,3976606,3974807	3979694,3979014,3978593,3977874,3977478,3977110,3976790,3976374	
chr17	3980504	3985464	3981274	3985418	-	IDH1	Cre17.g728800.t1.2		3985352,3985167,3984725,3984259,3983919,3983509,3983146,3982784,3982480,3982052,3981680,3980504	3985464,3985229,3984819,3984367,3984008,3983608,3983258,3982840,3982565,3982187,3981817,3981376	NAD-dependent isocitrate dehydrogenase, probable mitochondrial isoform
chr17	3985565	3988986	3985610	3988876	+	Cre17.g728850.t1.1	Cre17.g728850.t1.1		3985565,3986037,3986669,3986966,3987394,3987668,3987880,3988244,3988478	3985883,3986360,3986830,3987040,3987531,3987715,3987942,3988346,3988986	
chr17	3989035	3997086	3989103	3996775	+	OPR105	Cre17.g728864.t1.2		3989035,3989306,3989471,3990892,3991381,3992078,3992457,3992793,3993089,3993460,3994302,3994569,3994859,3995134	3989183,3989339,3990507,3991126,3991860,3992206,3992570,3992900,3993214,3993641,3994419,3994606,3994967,3997086	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr17	3997105	4002009	3998079	4001837	-	TAL3	Cre17.g728900.t1.2		4001611,4001453,4000995,4000554,4000266,3999780,3999395,3999080,3998758,3997105	4002009,4001488,4001059,4000643,4000344,3999880,3999508,3999130,3998826,3998133	Putative fructose-6-P aldolase; similar to a novel class I aldolase from E coli (GI:418514); EC:2.2.1.-
chr17	4002510	4011507	4003906	4011400	-	RFD2	Cre17.g728950.t1.1		4011313,4011195,4011011,4010030,4009554,4008932,4008471,4008125,4007709,4007308,4006877,4006409,4005609,4005162,4004457,4002510	4011507,4011237,4011064,4010118,4009779,4009130,4008578,4008283,4007859,4007409,4007008,4006528,4006130,4005314,4004852,4004035	Riboflavin metabolism-associated deaminase.  Possible bifunctional enzyme of 5-amino-6-(5-phosphoribosylamino)uracil reductase and diaminohydroxyphosphoribosylaminopyrimidine deaminase.  Probably cytosine/CMP/dCMP deaminase
chr17	4011716	4015977	4012130	4015856	+	Cre17.g728976.t1.1	Cre17.g728976.t1.1		4011716,4013829,4014764,4015426	4013614,4014585,4015089,4015977	
chr17	4015980	4034625	4016497	4034405	-	Cre17.g729000.t1.1	Cre17.g729000.t1.1		4032767,4032514,4032322,4031997,4031758,4031466,4031059,4030803,4030610,4030371,4030115,4029872,4029528,4029144,4028892,4028535,4028180,4027447,4025817,4025344,4024987,4024635,4024185,4023781,4023375,4023055,4022491,4022088,4021784,4021212,4020333,4015980	4034625,4032612,4032366,4032080,4031865,4031591,4031211,4030886,4030660,4030439,4030165,4029979,4029560,4029250,4028937,4028612,4028335,4027971,4027229,4025625,4025166,4024808,4024247,4023934,4023460,4023111,4022730,4022144,4021957,4021616,4021049,4020073	
chr17	4034796	4039827	4035201	4039115	+	Cre17.g729050.t1.1	Cre17.g729050.t1.1		4034796,4035155,4037154,4037719,4038572	4034976,4036715,4037318,4038442,4039827	
chr17	4039840	4049045	4040810	4047941	-	PHC37	Cre17.g729101.t1.1		4048253,4047874,4047446,4046553,4045833,4045279,4044838,4042036,4041662,4041257,4039840	4049045,4047947,4047555,4046667,4045925,4045417,4044865,4043570,4041909,4041465,4040903	
chr17	4050504	4052745	4051484	4052658	-	Cre17.g729150.t1.2	Cre17.g729150.t1.2		4052552,4051986,4050504	4052745,4052469,4051776	
chr17	4052846	4056803	4053047	4055921	+	Cre17.g729200.t1.1	Cre17.g729200.t1.1		4052846,4053223,4053440,4054007,4054408,4054790,4055181,4055870	4053137,4053320,4053566,4054093,4054502,4054937,4055237,4056803	
chr17	4056856	4069427	4056926	4068786	+	UPF2	Cre17.g729250.t1.1		4056856,4057030,4057203,4057592,4058086,4058542,4058944,4059349,4059598,4059980,4060505,4061633,4062039,4062581,4062999,4063353,4063809,4064225,4064750,4065074,4065413,4065805,4066251,4066621,4067061,4067512,4068210,4068482	4056965,4057117,4057333,4057729,4058244,4058697,4059038,4059454,4059681,4060093,4060621,4061908,4062268,4062690,4063165,4063469,4063915,4064366,4064891,4065174,4065487,4065891,4066304,4066780,4067187,4067896,4068310,4069427	Conserved Protein with MIF4G Domain; Part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance located in the perinuclear area interacts with translation release factors and the proteins that are functional homologs of yeast Upf1p and Upf3p
chr17	4069440	4071745	4069821	4070053	-	Cre17.g729301.t1.1	Cre17.g729301.t1.1		4070947,4070411,4069440	4071745,4070533,4070108	
chr17	4072996	4085857	4073687	4084642	+	Cre17.g729350.t1.1	Cre17.g729350.t1.1		4072996,4074021,4074406,4074754,4075030,4075305,4075559,4075809,4076254,4077286,4077606,4078031,4078584,4079042,4079405,4079604,4079794,4080207,4081635,4081965,4083447,4083853,4084369	4073698,4074144,4074431,4074822,4075135,4075346,4075622,4075938,4077145,4077358,4077774,4078328,4078824,4079239,4079448,4079635,4079911,4081397,4081770,4083196,4083692,4084038,4085857	
chr17	4085926	4087256	4086051	4086727	+	Cre17.g729393.t1.2	Cre17.g729393.t1.2		4085926,4086429	4086257,4087256	
chr17	4087516	4101357	4088079	4099243	+	Cre17.g729400.t1.2	Cre17.g729400.t1.2		4087516,4088418,4088813,4089185,4089489,4090141,4090397,4090590,4090989,4092033,4092249,4092670,4093216,4093657,4094041,4094226,4094414,4094774,4096190,4096520,4098063,4098491,4098970	4088090,4088541,4088838,4089253,4089594,4090182,4090460,4090719,4091886,4092105,4092417,4092964,4093456,4093854,4094084,4094257,4094531,4095961,4096325,4097793,4098308,4098679,4101357	
chr17	4101506	4109327	4101830	4108148	+	CLV2	Cre17.g729450.t1.2		4101506,4102166,4102566,4102966,4103469,4103855,4104213,4104904,4105209,4105699,4106201,4106821,4107394,4107786,4108114	4102084,4102367,4102785,4103269,4103616,4104006,4104547,4105050,4105329,4105868,4106358,4107030,4107471,4107982,4109327	
chr17	4110246	4111825	4110436	4111599	+	Cre17.g729500.t1.2	Cre17.g729500.t1.2		4110246,4110816	4110613,4111825	
chr17	4112037	4117665	4113051	4117640	-	Cre17.g729550.t1.1	Cre17.g729550.t1.1		4117539,4117242,4116375,4115923,4115303,4114875,4114646,4113814,4112037	4117665,4117396,4116454,4116009,4115533,4114987,4114691,4114233,4113366	
chr17	4117766	4126811	4117786	4125028	+	Cre17.g729600.t1.1	Cre17.g729600.t1.1		4117766,4118041,4118417,4119510,4120261,4120550,4120958,4121290,4121592,4121888,4122559,4123066,4123389,4123635,4123955,4124959	4117950,4118337,4119159,4120063,4120296,4120868,4121063,4121398,4121732,4122373,4122890,4123177,4123517,4123762,4124708,4126811	
chr17	4127006	4131807	4127656	4131597	+	MPA15	Cre17.g729650.t1.2		4127006,4127469,4128000,4128320,4128525,4128767,4129225,4129723,4130021,4130381,4130662	4127244,4127752,4128050,4128400,4128578,4128883,4129335,4129812,4130161,4130480,4131807	Metallophosphoesterase/metallo-dependent phosphatase related to diadenosine tetraphosphatase and serine/threonine protein phosphatases; may also be related to transcription factor - homologies are highest with the putative cyanobacterial protein - there i
chr17	4131870	4145535	4132196	4145309	-	CGL133	Cre17.g729700.t1.2		4145116,4144920,4144550,4144194,4143709,4143399,4142910,4142674,4142192,4141894,4140673,4140323,4139893,4139529,4138760,4138241,4137838,4137403,4136804,4136175,4135762,4135226,4134717,4134443,4134051,4133781,4132931,4131870	4145535,4144969,4144611,4144311,4143773,4143542,4142994,4142760,4142284,4142014,4141424,4140370,4139974,4139623,4139158,4138471,4137950,4137544,4137047,4136429,4135943,4135444,4134860,4134495,4134133,4133851,4133539,4132442	
chr17	4145926	4148075	4146893	4147845	-	Cre17.g729750.t1.2	Cre17.g729750.t1.2		4147598,4147277,4145926	4148075,4147401,4147022	Arylalkylamine N-acetyltransferase.  Identified by Okazaki et al. (29) [PMID: 1955276], who suggested the gene name AANAT
chr17	4148216	4152755	4148264	4152101	+	ALB3.2	Cre17.g729800.t1.2		4148216,4148377,4148504,4148670,4148879,4149146,4149696,4150154,4151146,4151499,4151865	4148305,4148423,4148576,4148766,4148989,4149412,4149842,4150208,4151246,4151592,4152755	One of four proteins related to the Arabidopsis ALBINO3 and yeast OXA1 proteins; located in the chloroplast and involved in the translocation of thylakoid membrane proteins
chr17	4152866	4155407	4153000	4155015	+	FAP227	Cre17.g729850.t1.2		4152866,4153762,4154319,4154576,4154862	4153048,4153948,4154377,4154650,4155407	Similar to Testis Specific Gene A2; Together with PF6, C1a-86, C1a-34, C1a-32 and calmodulin, forms the central pair projection C1a;  may play a role in modulating both inner and outer dynein arm activity; Similar to Sjoegren syndrome nuclear autoantigen
chr17	4155466	4159467	4155496	4158790	+	Cre17.g729900.t1.2	Cre17.g729900.t1.2		4155466,4155833,4156204,4156565,4157256,4157643,4158093,4158344,4158666	4155656,4155958,4156265,4156673,4157379,4157724,4158182,4158423,4159467	
chr17	4159576	4168801	4159863	4167861	+	Cre17.g729901.t1.1	Cre17.g729901.t1.1		4159576,4160048,4160704,4161354,4161807,4162513,4163128,4163462,4164568,4165015,4165300,4167263	4159883,4160528,4161079,4161463,4162274,4162743,4163207,4164389,4164645,4165095,4167200,4168801	
chr17	4168829	4171545	4169540	4171432	-	SRX2	Cre17.g729950.t1.2		4171272,4171141,4170787,4170425,4169949,4168829	4171545,4171197,4170879,4170483,4170008,4169624	
chr17	4171696	4178879	4172081	4178081	+	Cre17.g730000.t1.2	Cre17.g730000.t1.2		4171696,4172328,4172683,4173216,4173698,4173953,4174598,4175049,4175871,4176839,4177462,4177973	4172130,4172380,4172812,4173323,4173804,4174051,4174687,4175169,4175935,4176941,4177544,4178879	
chr17	4179006	4189307	4179214	4188448	+	Cre17.g730050.t1.1	Cre17.g730050.t1.1		4179006,4179464,4179729,4179937,4180767,4186142	4179236,4179552,4179764,4180633,4185908,4189307	
chr17	4189345	4194305	4190583	4193906	-	RSEP1	Cre17.g730100.t1.1		4193758,4193168,4192297,4191546,4191251,4191022,4189345	4194305,4193334,4193039,4192032,4191388,4191096,4190790	Intramembrane metalloprotease related to site-2 protease; contains M5 domain, with HExxH motif embedded in transmembrane helix; homologous to bacterial RseP/YaeL/PsoIVFB involved in transmembrane signaling; could be organelle-targeted
chr17	4194386	4200320	4195153	4200184	-	Cre17.g730150.t1.1	Cre17.g730150.t1.1		4199909,4199218,4198839,4198337,4196570,4194386	4200320,4199736,4198878,4198630,4197971,4196094	
chr17	4200368	4204490	4200767	4204238	-	PEX7	Cre17.g730200.t1.2		4204109,4203651,4203009,4202490,4201962,4201493,4200368	4204490,4203776,4203074,4202635,4202073,4201617,4201023	Homolog of PEX7 peroxisomal targeting signal 2 receptor
chr17	4204615	4207701	4204761	4207263	+	Cre17.g730250.t1.1	Cre17.g730250.t1.1		4204615,4204971,4205852,4206492,4207144	4204785,4205093,4205970,4206613,4207701	
chr17	4207831	4210802	4207905	4210448	+	Cre17.g730300.t1.2	Cre17.g730300.t1.2		4207831,4210052	4209633,4210802	
chr17	4210805	4214919	4211164	4214758	-	Cre17.g730350.t1.2	Cre17.g730350.t1.2		4214593,4210805	4214919,4211392	
chr17	4215098	4220980	4216222	4220639	-	Cre17.g730400.t1.1	Cre17.g730400.t1.1		4215098	4220980	
chr17	4221441	4228212	4221626	4227759	+	Cre17.g730450.t1.1	Cre17.g730450.t1.1		4221441,4224169,4224476,4224904,4225234,4225762,4226660,4226994,4227516	4223951,4224279,4224679,4225005,4225575,4226454,4226886,4227342,4228212	
chr17	4228261	4239626	4228511	4238541	+	Cre17.g730483.t1.1	Cre17.g730483.t1.1		4228261,4229176,4229680,4230110,4230429,4230904,4237343,4237915,4238472	4228901,4229538,4229949,4230226,4230755,4237203,4237632,4238224,4239626	
chr17	4240271	4248832	4240649	4248123	+	Cre17.g730516.t1.1	Cre17.g730516.t1.1		4240271,4241152,4241528,4241954,4242356,4242942,4244148,4247123,4247461,4248072	4240988,4241277,4241791,4242070,4242751,4244084,4246922,4247310,4247803,4248832	
chr17	4248881	4255158	4249078	4254281	+	Cre17.g730550.t1.2	Cre17.g730550.t1.2		4248881,4249270,4249617,4250082,4250344,4250604,4250940,4251194,4251513,4251833,4252130,4252651,4253032,4253764,4254071	4249185,4249421,4249813,4250225,4250477,4250687,4251039,4251309,4251619,4251995,4252256,4252764,4253590,4253894,4255158	
chr17	4255175	4258620	4257508	4258013	-	Cre17.g730575.t1.1	Cre17.g730575.t1.1		4257861,4255175	4258620,4257614	
chr17	4259145	4265200	4259393	4264801	+	Cre17.g730600.t1.1	Cre17.g730600.t1.1		4259145,4259691,4260071,4260518,4260802,4261101,4261418,4261694,4261970,4262342,4262639,4263150,4263464,4264296,4264594	4259434,4259842,4260267,4260661,4260935,4261184,4261517,4261809,4262076,4262504,4262765,4263263,4264145,4264426,4265200	
chr17	4265205	4275680	4266269	4275478	-	Cre17.g730650.t1.2	Cre17.g730650.t1.2		4275349,4274796,4274370,4273987,4273522,4273210,4272718,4272480,4271636,4269924,4269285,4268945,4268405,4265205	4275680,4274939,4274432,4274088,4273642,4273336,4272879,4272543,4271902,4271238,4269709,4269034,4268550,4268175	
chr17	4275816	4280882	4275872	4280457	+	Cre17.g730700.t1.1	Cre17.g730700.t1.1		4275816,4276182,4276538,4277078,4277383,4277905,4278329,4278712,4279145,4279637,4279973,4280370	4275943,4276285,4276639,4277147,4277518,4277982,4278401,4278780,4279255,4279776,4280110,4280882	
chr17	4280885	4287110	4281118	4286371	-	Cre17.g730750.t1.1	Cre17.g730750.t1.1		4286307,4285925,4285564,4285190,4284695,4284331,4283957,4283573,4283241,4282509,4282114,4281494,4280885	4287110,4286052,4285657,4285230,4284961,4284492,4284050,4283613,4283365,4282878,4282267,4281810,4281328	
chr17	4299493	4304870	4300041	4304822	-	Cre17.g730817.t1.1	Cre17.g730817.t1.1		4304476,4304055,4303833,4303567,4303167,4302690,4302308,4301897,4301728,4301398,4299493	4304870,4304360,4303919,4303739,4303343,4302875,4302526,4302137,4301800,4301529,4301236	
chr17	4299640	4304870	4300041	4304822	-	Cre17.g730817.t2.1	Cre17.g730817.t2.1		4304476,4304055,4303833,4303567,4303167,4302690,4302308,4301897,4301728,4301398,4299640	4304870,4304360,4303919,4303739,4303343,4302875,4302526,4302137,4301800,4301529,4301236	
chr17	4321023	4328810	4321506	4328470	-	FLA10	Cre17.g730950.t1.2		4328434,4328273,4328128,4327684,4327251,4326994,4326503,4326179,4325824,4325484,4325119,4324871,4324528,4324168,4323745,4323417,4323056,4322717,4322420,4321930,4321023	4328810,4328365,4328184,4327768,4327382,4327049,4326634,4326305,4325919,4325614,4325241,4324951,4324688,4324228,4323906,4323602,4323187,4322840,4322516,4322064,4321660	kinesin-2 (KRP85/95) family; motor subunit of heterotrimeric kinesin complex that drives anterograde intraflagellar transport
chr17	4328971	4333684	4329274	4333374	+	Cre17.g731001.t1.1	Cre17.g731001.t1.1		4328971,4331017,4331862	4330825,4331691,4333684	
chr17	4333984	4338635	4334130	4337063	+	Cre17.g731050.t1.2	Cre17.g731050.t1.2		4333984,4334630,4334931,4335440,4335764,4336148,4336474,4336925	4334413,4334758,4335154,4335535,4335838,4336241,4336583,4338635	
chr17	4339104	4341684	4340067	4341582	-	CPL14	Cre17.g731100.t1.2		4341185,4340595,4339104	4341684,4340975,4340408	
chr17	4341811	4344690	4341915	4344226	+	Cre17.g731150.t1.2	Cre17.g731150.t1.2		4341811,4342199,4342564,4343146,4343605,4344184	4341990,4342272,4342729,4343261,4343665,4344690	
chr17	4345096	4349435	4345172	4348547	+	Cre17.g731200.t1.1	Cre17.g731200.t1.1		4345096,4345923,4346683,4347019,4347485,4347893	4345586,4346442,4346882,4347141,4347625,4349435	
chr17	4349475	4352790	4350060	4352636	-	MRPS15	Cre17.g731250.t1.2		4352476,4352105,4351700,4351216,4350849,4350447,4349475	4352790,4352286,4351811,4351291,4350969,4350548,4350210	
chr17	4352891	4356092	4352924	4354611	+	Cre17.g731300.t1.2	Cre17.g731300.t1.2		4352891,4353198,4353354,4353576,4354075,4354551	4353122,4353275,4353446,4353790,4354201,4356092	
chr17	4356224	4360253	4356269	4359538	+	Cre17.g731350.t1.1	Cre17.g731350.t1.1		4356224,4356583,4357053,4357246,4357461,4357779,4358037,4358270,4358566,4358909,4359393	4356364,4356727,4357086,4357287,4357580,4357831,4358128,4358342,4358647,4358999,4360253	Possibly a
chr17	4367721	4370857	4368258	4370570	+	Cre17.g731450.t1.1	Cre17.g731450.t1.1		4367721,4368177,4368592,4369838	4368105,4368423,4369548,4370857	
chr17	4370931	4376010	4371241	4375183	+	Cre17.g731466.t1.2	Cre17.g731466.t1.2		4370931,4371925,4372219,4372526,4374854	4371679,4372032,4372290,4374629,4376010	
chr17	4376730	4383819	4376983	4383585	-	FAP394	Cre17.g731500.t1.2		4383524,4383187,4382764,4381990,4381364,4380942,4380623,4380145,4379847,4379442,4378720,4378332,4377870,4377392,4376730	4383819,4383368,4382861,4382173,4381567,4381108,4380693,4380380,4379918,4379543,4378845,4378472,4377986,4377556,4377190	Contains a TIR domain that are also found in bacterial Toll-like receptors and has a right handed beta helix region
chr17	4384489	4388791	4384562	4387434	+	Cre17.g731550.t1.2	Cre17.g731550.t1.2		4384489,4385311,4385897,4386328,4387032,4387278	4384800,4385554,4386064,4386676,4387109,4388791	
chr17	4388840	4390071	4389061	4389854	+	Cre17.g731561.t1.1	Cre17.g731561.t1.1		4388840,4389336,4389854	4389135,4389515,4390071	
chr17	4390084	4391529	4390549	4391449	-	Cre17.g731571.t1.1	Cre17.g731571.t1.1		4391425,4390987,4390084	4391529,4391205,4390771	
chr17	4391630	4394131	4391657	4393594	+	Cre17.g731581.t1.1	Cre17.g731581.t1.1		4391630,4391844,4392195,4392647,4392895,4393543	4391678,4391951,4392421,4392667,4393240,4394131	
chr17	4395387	4396949	4395864	4396783	-	Cre17.g731591.t1.1	Cre17.g731591.t1.1		4396759,4396302,4395387	4396949,4396526,4396089	
chr17	4399420	4400591	4399601	4400476	+	Cre17.g731600.t1.1	Cre17.g731600.t1.1		4399420,4399852,4400346	4399675,4399989,4400591	
chr17	4400606	4402129	4401067	4401962	-	Cre17.g731650.t1.2	Cre17.g731650.t1.2		4401938,4401502,4400606	4402129,4401720,4401289	
chr17	4402380	4404201	4402444	4403466	+	Cre17.g731675.t2.1	Cre17.g731675.t2.1		4402380,4402809	4402474,4404201	
chr17	4402320	4404201	4402444	4403466	+	Cre17.g731675.t1.2	Cre17.g731675.t1.2		4402320,4402812	4402474,4404201	
chr17	4404260	4415394	4404484	4413172	+	FMO2	Cre17.g731700.t1.1		4404260,4404886,4405125,4405923,4406343,4406966,4407515,4408115,4408585,4409094,4409466,4409853,4410464,4410872,4411276	4404615,4404911,4405231,4405985,4406645,4407031,4407646,4408187,4408745,4409165,4409554,4409979,4410568,4410970,4415394	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; one of the many Arabidopsis homologues is essential for Systemic Acquired Resistance to pathogens (PMID: 16778014)
chr17	4415984	4424159	4418694	4424090	-	CYP740A1	Cre17.g731750.t1.1		4423892,4423555,4423247,4422758,4422395,4421903,4421316,4420883,4420496,4419521,4419133,4415984	4424159,4423674,4423321,4422886,4422475,4422061,4421642,4420957,4420558,4419823,4419255,4418844	Cytochrome P450. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols.
chr17	4424644	4429059	4425577	4428718	-	Cre17.g731800.t1.2	Cre17.g731800.t1.2		4428648,4428274,4427984,4427766,4427506,4424644	4429059,4428432,4428029,4427795,4427595,4427162	
chr17	4429116	4432724	4429617	4432572	-	Cre17.g731850.t1.2	Cre17.g731850.t1.2		4432533,4432378,4431960,4431611,4431203,4430815,4430394,4429998,4429116	4432724,4432435,4432063,4431758,4431339,4430935,4430528,4430062,4429716	2,4-dienoyl-CoA reductase (NADPH-dependent), putatively peroxisomal
chr17	4432855	4433821	4432952	4433779	+	Cre17.g731900.t1.1	Cre17.g731900.t1.1		4432855,4433337,4433580,4433753	4433117,4433429,4433646,4433821	
chr17	4433824	4436619	4435380	4436530	-	ATP9B	Cre17.g731950.t1.2		4436439,4436322,4436164,4435762,4433824	4436619,4436347,4436193,4435933,4435535	next to ATP9A
chr17	4436730	4438142	4436869	4437662	+	ATP9A	Cre17.g732000.t1.1		4436730,4436863,4437064,4437233,4437341	4436783,4436963,4437098,4437262,4438142	next to ATP9B
chr17	4438144	4442779	4438899	4442659	-	AGE3	Cre17.g732050.t1.2		4442338,4442042,4441443,4441135,4440603,4440287,4439974,4438144	4442779,4442146,4441520,4441244,4440687,4440324,4440084,4439716	A/G-specific adenine glycosylase/endonuclease III.  DNA repair glycosylase involved in base-excision repair, ChromDB DNRG341.  Oxidizatively damaged G (8-oxoG) can mispair with A and C.
chr17	4438144	4442779	4438899	4442659	-	AGE3	Cre17.g732050.t2.1		4442338,4442042,4441443,4441135,4440603,4440287,4439974,4438144	4442779,4442146,4441520,4441244,4440687,4440324,4440084,4439647	A/G-specific adenine glycosylase/endonuclease III.  DNA repair glycosylase involved in base-excision repair, ChromDB DNRG341.  Oxidizatively damaged G (8-oxoG) can mispair with A and C.
chr17	4443261	4447788	4443875	4447670	-	SSA4	Cre17.g732100.t1.2		4447428,4447132,4446940,4446436,4445735,4445312,4444934,4444394,4443261	4447788,4447213,4446995,4446580,4445866,4445383,4445002,4444532,4444036	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr17	4447923	4450519	4448440	4449708	+	FAP130	Cre17.g732150.t1.2		4447923,4448245,4449272,4449618	4448042,4448799,4449434,4450519	Flagellar Associated Protein, found in the flagellar proteome.  Probably has 2 alternative transcripts
chr17	4450740	4452670	4450769	4451694	+	Cre17.g732200.t1.2	Cre17.g732200.t1.2		4450740,4450886,4451034,4451403	4450815,4450965,4451108,4452670	
chr17	4452890	4455447	4453447	4455391	-	Cre17.g732250.t1.1	Cre17.g732250.t1.1		4455283,4454858,4454535,4453957,4452890	4455447,4454914,4454639,4454056,4453554	
chr17	4455555	4463451	4455676	4462232	+	GAL1	Cre17.g732300.t1.2		4455555,4455920,4456233,4456578,4457103,4457454,4458413,4458946,4459339,4459802,4460172,4460614,4461085,4461306,4461733,4462115	4455767,4456003,4456303,4456685,4457156,4457544,4458531,4459041,4459433,4459889,4460281,4460698,4461183,4461465,4461821,4463451	
chr17	4464820	4473036	4465387	4471815	+	GOX4	Cre17.g732350.t2.1		4464820,4465227,4467358,4467860,4468429,4468707,4469103,4469468,4469747,4470173,4470627,4471027,4471377	4464949,4467093,4467447,4468010,4468506,4468790,4469213,4469569,4469839,4470394,4470777,4471130,4473036	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); possess an N-terminal SP-rich hydroxyproline-rich domain; linked to galactokinase gene upstream, and to GOX5
chr17	4464680	4473036	4465387	4471815	+	GOX4	Cre17.g732350.t1.1		4464680,4464860,4465227,4467358,4467860,4468429,4468707,4469103,4469468,4469747,4470173,4470627,4471027,4471377	4464770,4464949,4467093,4467447,4468010,4468506,4468790,4469213,4469569,4469839,4470394,4470777,4471130,4473036	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); possess an N-terminal SP-rich hydroxyproline-rich domain; linked to galactokinase gene upstream, and to GOX5
chr17	4473044	4481899	4474638	4481554	-	Cre17.g732400.t1.1	Cre17.g732400.t1.1		4479802,4479380,4478739,4475933,4475056,4473044	4481899,4479535,4479116,4478577,4475643,4474771	
chr17	4483060	4490711	4483269	4490188	+	Cre17.g732450.t1.1	Cre17.g732450.t1.1		4483060,4483658,4484012,4486582	4483483,4483779,4486387,4490711	
chr17	4490817	4502409	4492643	4501622	-	Cre17.g732500.t1.1	Cre17.g732500.t1.1		4501471,4501189,4500848,4500658,4500485,4497228,4496844,4490817	4502409,4501263,4500909,4500721,4500569,4499607,4497053,4496729	
chr17	4502840	4512961	4503199	4511931	+	Cre17.g732533.t1.1	Cre17.g732533.t1.1		4502840,4504497,4505267,4505485,4505897,4506165,4506355,4506667,4508763,4509136,4509546,4509832,4510057,4510371,4510749,4511031,4511345,4511709	4503222,4504794,4505289,4505735,4506046,4506203,4506444,4508625,4508852,4509387,4509695,4509909,4510146,4510451,4510785,4511130,4511449,4512961	
chr17	4513240	4519961	4513998	4518605	+	Cre17.g732566.t1.1	Cre17.g732566.t1.1		4513240,4514596,4515051,4515577,4515840,4516940,4517254,4517760,4518000,4518294	4514425,4514745,4515431,4515729,4516835,4517092,4517646,4517796,4518121,4519961	
chr17	4520010	4528945	4520787	4527962	+	GOX5	Cre17.g732600.t1.2		4520010,4521267,4521574,4522255,4522657,4523310,4523846,4524679,4525070,4525217,4525619,4525905,4526153,4526499,4526984,4527387,4527812	4521046,4521419,4521939,4522407,4523028,4523494,4523938,4524821,4525098,4525310,4525712,4526002,4526246,4526670,4527149,4527498,4528945	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); linked to GOX4
chr17	4529210	4542241	4529405	4541203	+	Cre17.g732650.t1.2	Cre17.g732650.t1.2		4529210,4529656,4531834,4532242,4532500,4533890,4534361,4537197,4539711	4529517,4531292,4532015,4532319,4533664,4534063,4536903,4539533,4542241	
chr17	4542698	4545111	4542843	4544730	+	CUTC1	Cre17.g732700.t1.2		4542698,4543177,4543461,4543759,4544064,4544540	4542942,4543305,4543514,4543830,4544203,4545111	
chr17	4554272	4559603	4554455	4559528	-	Cre17.g732750.t1.1	Cre17.g732750.t1.1		4559115,4558266,4557681,4556205,4554272	4559603,4558938,4557785,4557392,4555832	
chr17	4559704	4566015	4559914	4565933	+	Cre17.g732802.t1.1	Cre17.g732802.t1.1		4559704,4560268,4560551,4561979,4562516,4563146,4563529,4563911,4564396,4564717,4565204,4565620	4560073,4560321,4560688,4562040,4562578,4563220,4563604,4564069,4564479,4564862,4565293,4566015	
chr17	4566018	4568383	4566793	4568335	-	SCO1	Cre17.g732850.t1.2		4567641,4567175,4566018	4568383,4567293,4566922	Putative mitochondrion-associated cytochrome c oxidase assembly factor SCO1/Sen1; precursor of mitochondrial protein
chr17	4568504	4573893	4568550	4573631	+	Cre17.g732900.t1.1	Cre17.g732900.t1.1		4568504,4568901,4569207,4569456,4570058,4570455,4570873,4571818,4572655	4568631,4569035,4569316,4569792,4570190,4570648,4571228,4572300,4573893	
chr17	4574004	4579665	4574189	4579123	+	Cre17.g732901.t1.2	Cre17.g732901.t1.2		4574004,4574507,4575021,4575521,4576200,4576577,4577048,4577665,4578078	4574382,4574766,4575299,4575865,4576294,4576748,4577294,4577818,4579665	
chr17	4579668	4581093	4580358	4581002	-	Cre17.g732951.t1.1	Cre17.g732951.t1.1		4580867,4579668	4581093,4580715	
chr17	4581764	4586446	4582080	4585500	+	Cre17.g733000.t1.2	Cre17.g733000.t1.2		4581764,4582230,4582558,4582979,4583282,4585500	4582127,4582274,4582604,4583025,4584009,4586446	
chr17	4586848	4591773	4587566	4591384	-	Cre17.g733026.t1.1	Cre17.g733026.t1.1		4591328,4590613,4586848	4591773,4590787,4587779	
chr17	4591914	4606447	4592293	4606271	+	Cre17.g733050.t1.2	Cre17.g733050.t1.2		4591914,4592758,4593074,4593390,4593706,4594024,4594342,4594665,4594981,4595299,4595623,4595943,4596263,4596584,4596900,4597218,4597536,4597852,4598174,4598494,4598818,4599138,4599456,4599770,4600088,4600404,4600720,4601036,4601354,4601670,4601991,4602309,4602631,4602953,4603282,4603615,4603933,4604255,4604577,4604906,4605230,4605548,4605874,4606192	4592385,4592868,4593184,4593500,4593816,4594134,4594452,4594775,4595091,4595409,4595733,4596053,4596373,4596694,4597010,4597328,4597646,4597962,4598284,4598604,4598928,4599248,4599566,4599880,4600198,4600514,4600830,4601146,4601464,4601780,4602101,4602419,4602741,4603063,4603392,4603725,4604043,4604365,4604687,4605016,4605340,4605658,4605984,4606447	
chr17	4599434	4606447	4599459	4606271	+	Cre17.g733050.t3.1	Cre17.g733050.t3.1		4599434,4599770,4600088,4600404,4600720,4601036,4601354,4601670,4601991,4602309,4602631,4602953,4603282,4603615,4603933,4604255,4604577,4604906,4605230,4605548,4605874,4606192	4599566,4599880,4600198,4600514,4600830,4601146,4601464,4601780,4602101,4602419,4602741,4603063,4603392,4603725,4604043,4604365,4604687,4605016,4605340,4605658,4605984,4606447	
chr17	4591914	4593625	4592293	4593505	+	Cre17.g733050.t2.1	Cre17.g733050.t2.1		4591914,4592758,4593074,4593390	4592385,4592868,4593184,4593625	
chr17	4606708	4615303	4608020	4614897	-	Cre17.g733100.t1.1	Cre17.g733100.t1.1		4614456,4613912,4612840,4611285,4606708	4615303,4614001,4613766,4612610,4611017	
chr17	4615614	4631793	4618460	4631346	-	COP10	Cre17.g733150.t1.1		4631496,4631289,4630913,4630574,4630319,4629960,4629605,4629177,4628738,4628329,4628047,4627762,4627400,4626936,4626681,4626366,4626083,4625538,4625081,4624459,4624212,4623811,4623445,4623040,4622466,4622117,4621660,4621267,4615614	4631793,4631376,4631042,4630646,4630412,4630038,4629674,4629350,4628804,4628433,4628163,4627837,4627566,4627064,4626752,4626461,4626142,4625747,4625366,4624854,4624316,4623922,4623517,4623172,4622755,4622164,4621809,4621361,4621035	Histidine kinase rhodopsin 6; contains bacteriorhodopsin, Histine kinase and response regulator receiver domains
chr17	4615614	4631793	4618460	4631346	-	COP10	Cre17.g733150.t2.1		4631496,4631289,4630913,4630574,4630319,4629960,4629605,4628738,4628329,4628047,4627762,4627400,4626936,4626681,4626366,4626083,4625538,4625081,4624459,4624212,4623811,4623445,4623040,4622466,4622117,4621660,4621267,4615614	4631793,4631376,4631042,4630646,4630412,4630038,4629674,4628804,4628433,4628163,4627837,4627566,4627064,4626752,4626461,4626142,4625747,4625366,4624854,4624316,4623922,4623517,4623172,4622755,4622164,4621809,4621361,4621035	Histidine kinase rhodopsin 6; contains bacteriorhodopsin, Histine kinase and response regulator receiver domains
chr17	4631898	4635883	4632586	4635758	-	Cre17.g733162.t1.1	Cre17.g733162.t1.1		4635640,4634841,4633520,4633148,4631898	4635883,4635458,4634609,4633238,4632973	
chr17	4631898	4635883	4632026	4635758	-	Cre17.g733162.t2.1	Cre17.g733162.t2.1		4635640,4634841,4633520,4633148,4632351,4631898	4635883,4635458,4634609,4633238,4632973,4632026	
chr17	4635938	4636523	4635956	4636411	-	Cre17.g733174.t1.1	Cre17.g733174.t1.1		4636331,4635938	4636523,4636131	
chr17	4636854	4639555	4637245	4638999	+	SRR4	Cre17.g733200.t1.1		4636854,4637402,4637867,4638051,4638646,4638977	4637280,4637505,4637936,4638307,4638712,4639555	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr17	4639724	4643900	4640105	4643242	+	Cre17.g733208.t1.2	Cre17.g733208.t1.2		4639724,4640256,4640507,4641032,4641869,4642522,4643242	4640125,4640403,4640659,4641554,4642248,4643187,4643900	
chr17	4643960	4647573	4644495	4647444	-	FKB16-4	Cre17.g733250.t1.2		4647377,4647094,4646818,4646285,4645993,4645684,4645272,4645011,4644797,4643960	4647573,4647207,4646882,4646349,4646059,4645744,4645342,4645067,4644867,4644544	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); probably located in thylakoid lumen (homology to AT3g10060, bipartite TP 27 + RR motif); [PMID: 15701785]
chr17	4647714	4654495	4647945	4653047	+	Cre17.g733300.t1.1	Cre17.g733300.t1.1		4647714,4648863,4649537,4650114,4650466,4650798,4651268,4651790,4652713	4648651,4649084,4649679,4650191,4650546,4650843,4651398,4652505,4654495	
chr17	4654554	4664883	4654647	4664199	+	Cre17.g733350.t1.1	Cre17.g733350.t1.1		4654554,4655201,4655612,4656045,4656239,4656548,4657620,4657868,4658242,4658881,4659411,4659696,4659860,4660337,4660765,4661053,4661324,4661683,4662774,4663075,4663462,4663762,4664100	4654796,4655354,4655789,4656082,4656384,4657359,4657711,4658008,4658493,4659276,4659497,4659722,4660000,4660561,4660800,4661129,4661425,4662025,4662830,4663224,4663611,4663896,4664883	
chr17	4664888	4675733	4666431	4675488	-	Cre17.g733400.t1.2	Cre17.g733400.t1.2		4675309,4674906,4674471,4674131,4673744,4672802,4672530,4672243,4671903,4671241,4671025,4670810,4670578,4670303,4669669,4669276,4668973,4668602,4668102,4667787,4667404,4667018,4666726,4664888	4675733,4675059,4674648,4674168,4673889,4673496,4672621,4672383,4672058,4671636,4671111,4670836,4670672,4670348,4669893,4669311,4669049,4668703,4668375,4667843,4667553,4667167,4666860,4666530	
chr17	4679664	4686895	4680341	4686678	+	Cre17.g733425.t1.1	Cre17.g733425.t1.1		4679664	4686895	
chr17	4686908	4703473	4688078	4702755	-	Cre17.g733450.t1.2	Cre17.g733450.t1.2		4701313,4696778,4693543,4690908,4686908	4703473,4701235,4696061,4693369,4690850	
chr17	4704064	4705295	4704601	4704938	+	Cre17.g733550.t1.2	Cre17.g733550.t1.2		4704064,4704600	4704535,4705295	
chr17	4705308	4714663	4706348	4714646	-	Cre17.g733600.t1.1	Cre17.g733600.t1.1		4714487,4714117,4710551,4708825,4705308	4714663,4714237,4713797,4710291,4708566	
chr17	4763615	4768882	4763646	4768627	-	BIOF1	Cre17.g733650.t1.1		4768492,4767572,4767131,4766732,4766124,4765083,4764649,4764043,4763615	4768882,4768009,4767217,4766813,4766305,4765172,4764768,4764107,4763761	Biotin biosynthesis protein BIOF 7-keto-8-aminopelargonic acid synthase
chr17	4714712	4716263	4715370	4716122	-	Cre17.g733652.t1.1	Cre17.g733652.t1.1		4715969,4714712	4716263,4715766	
chr17	4769053	4770794	4769209	4769542	+	Cre17.g733678.t1.2	Cre17.g733678.t1.2		4769053,4769266	4769212,4770794	
chr17	4770993	4772980	4772211	4772413	+	Cre17.g733689.t1.1	Cre17.g733689.t1.1		4770993,4772181	4771691,4772980	
chr17	4776556	4781142	4779009	4781031	-	Cre17.g733700.t1.2	Cre17.g733700.t1.2		4780971,4780565,4780305,4780102,4779823,4776556	4781142,4780723,4780360,4780185,4779891,4779583	
chr17	4719338	4720324	4719549	4720272	-	Cre17.g733702.t1.1	Cre17.g733702.t1.1		4720252,4719338	4720324,4720048	
chr17	4742667	4749872	4743146	4749794	-	Cre17.g733750.t1.2	Cre17.g733750.t1.2		4749625,4749298,4748776,4748224,4747825,4747555,4747289,4746808,4746088,4745866,4745643,4745277,4744692,4744224,4743844,4743528,4742667	4749872,4749434,4748949,4748560,4748049,4747700,4747465,4747138,4746372,4745984,4745720,4745402,4745087,4744523,4744083,4743574,4743159	
chr17	4751657	4755722	4754289	4755611	-	Cre17.g733752.t1.1	Cre17.g733752.t1.1		4755592,4751657	4755722,4755386	
chr17	4781202	4782302	4781333	4782084	-	Cre17.g733753.t1.1	Cre17.g733753.t1.1		4782058,4781787,4781202	4782302,4781907,4781471	
chr17	4791305	4804122	4792091	4803719	-	Cre17.g733800.t1.1	Cre17.g733800.t1.1		4803623,4803211,4802514,4802045,4801777,4801214,4795837,4794894,4793918,4791305	4804122,4803363,4802973,4802295,4801834,4801309,4800633,4795695,4794623,4793597	
chr17	4811041	4814352	4811668	4814135	-	Cre17.g733850.t1.2	Cre17.g733850.t1.2		4813300,4811041	4814352,4812045	
chr17	4811041	4814352	4811668	4814135	-	Cre17.g733850.t2.1	Cre17.g733850.t2.1		4814092,4813300,4811041	4814352,4814031,4812045	
chr17	4816327	4818172	4816849	4817717	-	Cre17.g733900.t1.2	Cre17.g733900.t1.2		4816327	4818172	
chr17	4819487	4825102	4819923	4824334	-	CGL152	Cre17.g733950.t1.2		4824184,4823714,4823486,4823221,4823026,4822653,4822349,4821782,4821394,4821123,4820709,4820287,4819487	4825102,4823794,4823564,4823276,4823076,4822712,4822456,4822032,4821500,4821209,4820783,4820324,4820001	
chr17	4825423	4826614	4825468	4825673	+	Cre17.g733986.t1.2	Cre17.g733986.t1.2		4825423	4826614	
chr17	4826647	4831132	4827581	4831059	-	Cre17.g734000.t1.2	Cre17.g734000.t1.2		4830828,4830459,4830237,4829819,4829399,4829196,4828454,4826647	4831132,4830563,4830308,4829879,4829477,4829271,4828643,4828054	
chr17	4831243	4840359	4831304	4839915	+	Cre17.g734050.t1.1	Cre17.g734050.t1.1		4831243,4831490,4832046,4832510,4832867,4834724,4836247,4836716,4838415	4831367,4831671,4832207,4832642,4833940,4836060,4836427,4837972,4840359	
chr17	4840633	4844200	4840661	4843484	+	Cre17.g734100.t1.2	Cre17.g734100.t1.2		4840633,4840923,4841896,4842393,4842772,4843407	4840859,4841615,4842143,4842456,4842883,4844200	
chr17	4845833	4848364	4846617	4847354	+	Cre17.g734125.t1.2	Cre17.g734125.t1.2		4845833,4847290	4847099,4848364	
chr17	4848368	4849902	4849534	4849739	-	Cre17.g734134.t1.1	Cre17.g734134.t1.1		4848368	4849902	
chr17	4848368	4851432	4850683	4850909	-	Cre17.g734142.t1.1	Cre17.g734142.t1.1		4851186,4848368	4851432,4850956	
chr17	4851667	4855402	4852379	4855306	-	Cre17.g734150.t1.1	Cre17.g734150.t1.1		4855211,4854963,4854055,4853856,4853368,4853062,4852693,4851667	4855402,4855125,4854645,4853900,4853477,4853098,4852788,4852529	
chr17	4855528	4860182	4855939	4860140	-	DPA1	Cre17.g734200.t1.2		4860093,4859940,4859743,4859604,4859329,4858971,4858675,4858086,4857676,4857430,4857209,4856908,4856609,4856335,4855528	4860182,4859989,4859807,4859651,4859435,4859136,4858767,4858127,4857792,4857499,4857305,4856989,4856698,4856407,4856118	Putative L,L-diaminopimelate aminotransferase (EC 2.6.1.-); aminotransferase, class 1 & 2; based on similarity to novel L,L-diaminopimelate aminotransferase (AGD2) in Arabidopsis (GenBank NP_567934) involved in lysine biosynthesis [PMID: 16361515]; organelle (mitochondria) targeting predicted by Target-P; plastid location expected based on homology
chr17	4862803	4874704	4862939	4874027	+	Cre17.g734250.t1.1	Cre17.g734250.t1.1		4862803,4863158,4863372,4863693,4864431,4864868,4865451,4865959,4866455,4866842,4867349,4868149,4868501,4869229,4869588,4869909,4870496,4870948,4871298,4871798,4872081,4872456,4872928,4873308,4873496,4873828	4863095,4863285,4863573,4863974,4864535,4864995,4865726,4866229,4866586,4867126,4867955,4868207,4868789,4869289,4869708,4870284,4870600,4871048,4871372,4871870,4872181,4872625,4872962,4873340,4873634,4874704	
chr17	4875707	4884722	4876218	4883728	-	Cre17.g734300.t1.1	Cre17.g734300.t1.1		4883927,4883217,4882847,4882449,4882071,4881603,4881241,4880656,4880303,4880072,4879727,4879431,4879219,4878724,4878454,4878123,4877829,4877602,4877249,4876830,4876530,4875707	4884722,4883795,4883028,4882620,4882320,4881795,4881378,4880777,4880378,4880151,4879883,4879547,4879269,4878819,4878516,4878182,4877896,4877719,4877314,4876955,4876639,4876366	
chr17	4875707	4884772	4876218	4883728	-	Cre17.g734300.t2.1	Cre17.g734300.t2.1		4884332,4883927,4883217,4882847,4882449,4882071,4881603,4881241,4880656,4880303,4880072,4879727,4879431,4879219,4878724,4878454,4878123,4877829,4877602,4877249,4876830,4876530,4875707	4884772,4884010,4883795,4883028,4882620,4882320,4881795,4881378,4880777,4880378,4880151,4879883,4879547,4879269,4878819,4878516,4878182,4877896,4877719,4877314,4876955,4876639,4876366	
chr17	4885756	4895391	4886419	4895305	-	Cre17.g734350.t1.1	Cre17.g734350.t1.1		4895082,4894942,4894709,4893983,4893337,4893023,4892494,4891776,4891381,4891173,4890883,4890570,4890278,4889907,4889448,4889048,4888715,4888455,4888112,4887937,4887626,4885756	4895391,4895002,4894791,4894605,4893872,4893171,4892918,4892300,4891467,4891245,4891004,4890680,4890379,4890041,4889648,4889268,4888868,4888508,4888195,4887998,4887668,4887430	
chr17	4895502	4903556	4895727	4902409	+	CUL3	Cre17.g734400.t1.1		4895502,4895869,4896070,4896518,4896859,4897259,4897588,4897964,4898384,4898702,4899015,4899571,4899948,4900367,4900719,4900951,4901308,4901637,4902000,4902247	4895778,4895951,4896169,4896636,4896920,4897387,4897688,4898071,4898470,4898818,4899140,4899711,4900044,4900485,4900787,4901105,4901449,4901837,4902074,4903556	Cullin
chr17	4904247	4904961	4904460	4904923	-	PRPL19	Cre17.g734450.t1.2		4904247	4904961	imported to chloroplast; Chloroplast large ribosomal subunit protein L19
chr17	4905062	4907184	4905201	4906842	+	ATPVE	Cre17.g734500.t1.2		4905062,4905312,4905656,4905859,4906168,4906697	4905216,4905398,4905756,4906015,4906361,4907184	Vacuolar ATP synthase subunit E, V-ATPase E subunit, Vacuolar proton pump E subunit
chr17	4915250	4918354	4915395	4918012	+	RPN9	Cre17.g734516.t1.1		4915250,4916029,4916373,4916656,4917029,4917357,4917814	4915844,4916160,4916505,4916736,4917205,4917395,4918354	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN9 (subunit 9) (PSD11) (PSMD11); 26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN9 (subunit 13) (PSD13) (PSMD13)
chr17	4918617	4920101	4919694	4920052	-	Cre17.g734532.t1.1	Cre17.g734532.t1.1		4918617	4920101	
chr17	4920672	4933993	4920748	4932706	+	Cre17.g734548.t1.1	Cre17.g734548.t1.1		4920672,4921066,4921371,4921693,4922057,4922410,4922825,4923709,4924114,4924460,4924783,4924969,4925771,4926488,4926818,4927229,4927509,4928109,4928372,4928636,4928956,4929402,4929666,4929927,4930278,4930442,4931058,4931319,4932595	4920997,4921122,4921476,4921820,4922169,4922488,4922920,4923846,4924224,4924537,4924833,4925058,4925860,4926530,4926912,4927375,4927651,4928205,4928455,4928698,4929048,4929473,4929737,4930064,4930355,4930506,4931139,4931453,4933993	
chr17	4934708	4940726	4935670	4940374	-	MDH1	Cre17.g734564.t1.1		4940324,4940069,4939923,4939434,4939071,4938461,4938052,4937594,4937315,4937019,4934708	4940726,4940211,4940004,4939860,4939220,4938619,4938168,4937770,4937418,4937121,4936645	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; stabilizes atpH mRNA and promotes translation of atpI; molecular mapping indicates that the gene is on chromosome 15 (formerly ), not 17
chr17	4942396	4943921	4942973	4943486	-	Cre17.g734580.t1.1	Cre17.g734580.t1.1		4943771,4943429,4942396	4943921,4943550,4943219	
chr17	4942396	4943921	4942973	4943486	-	Cre17.g734580.t2.1	Cre17.g734580.t2.1		4943743,4943429,4942396	4943921,4943550,4943219	
chr17	4944202	4946083	4944291	4945564	+	Cre17.g734596.t1.1	Cre17.g734596.t1.1		4944202,4944618,4944907,4945389	4944501,4944740,4945091,4946083	
chr17	4946130	4954414	4946339	4953926	+	MRP2	Cre17.g734612.t1.1		4946130,4947486,4947844,4948117,4948485,4948736,4949155,4949510,4949841,4950197,4950660,4950893,4951292,4951569,4951998,4952332,4952998,4953851	4947287,4947711,4947935,4948228,4948654,4948905,4949263,4949644,4950014,4950454,4950791,4951118,4951419,4951703,4952186,4952826,4953474,4954414	Putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683
chr17	4957185	4959374	4958118	4959153	-	Cre17.g734628.t1.1	Cre17.g734628.t1.1		4958977,4958780,4957185	4959374,4958836,4958323	
chr17	4959482	4967303	4959727	4966177	+	SQE1	Cre17.g734644.t1.1		4959482,4960162,4960599,4960860,4961135,4961499,4963313,4963614,4963950,4965269,4965622,4965934	4959817,4960227,4960739,4960959,4961221,4961671,4963443,4963698,4964042,4965506,4965746,4967303	[EC: 1.14.14.17]; converts squalene to 2,3-oxidosqualene; predicted with three transmembrane domains; localized in ER
chr17	4976492	4980923	4977551	4980446	+	Cre17.g734660.t1.1	Cre17.g734660.t1.1		4976492,4977519,4978266,4978405,4978593,4979387,4979618,4980366	4977244,4978156,4978305,4978507,4978663,4979537,4979686,4980923	
chr17	4981196	4986081	4981975	4985988	-	Cre17.g734677.t1.1	Cre17.g734677.t1.1		4985102,4984847,4984347,4984035,4983667,4983427,4983233,4982912,4982658,4981196	4986081,4984936,4984747,4984271,4983944,4983604,4983352,4983151,4982780,4982566	
chr17	4986345	4989041	4986852	4988715	-	Cre17.g734693.t1.1	Cre17.g734693.t1.1		4988644,4988513,4988180,4988007,4987854,4987597,4987098,4986345	4989041,4988560,4988227,4988054,4987907,4987670,4987427,4986896	
chr17	4989252	5000642	4990632	4999758	+	Cre17.g734709.t1.1	Cre17.g734709.t1.1		4989252,4990485,4992501,4993912,4996834,4998494,4998911,4999758	4989370,4992316,4993516,4996689,4998069,4998713,4999694,5000642	
chr17	5010966	5014267	5011246	5011451	+	Cre17.g734725.t1.1	Cre17.g734725.t1.1		5010966	5014267	
chr17	5021208	5024885	5021760	5024805	-	Cre17.g734741.t1.1	Cre17.g734741.t1.1		5023095,5022097,5021208	5024885,5022914,5021760	
chr17	5025008	5029447	5025057	5028730	+	Cre17.g734757.t1.1	Cre17.g734757.t1.1		5025008,5025383,5025915,5026479,5026666,5027249,5027519,5027770,5028114,5028319	5025188,5025697,5026001,5026550,5027152,5027409,5027650,5027882,5028199,5029447	
chr17	5029470	5034395	5029636	5033867	-	Cre17.g734773.t1.1	Cre17.g734773.t1.1		5034252,5034099,5033842,5033343,5033025,5032554,5032284,5031360,5031042,5030562,5030102,5029922,5029470	5034395,5034152,5033915,5033672,5033170,5032871,5032392,5031689,5031190,5030879,5030400,5029982,5029792	
chr17	5029470	5034395	5029636	5033867	-	Cre17.g734773.t2.1	Cre17.g734773.t2.1		5034252,5034099,5033842,5033343,5033025,5032554,5032284,5031360,5031042,5030562,5030102,5029922,5029470	5034395,5034152,5033915,5033672,5033170,5032871,5032392,5031689,5031187,5030879,5030400,5029982,5029792	
chr17	5061910	5068965	5063982	5068899	-	Cre17.g734789.t1.1	Cre17.g734789.t1.1		5068866,5067976,5067206,5066757,5066287,5065823,5065387,5061910	5068965,5068675,5067835,5066872,5066561,5066024,5065611,5065059	
chr17	5069065	5078745	5070482	5078426	-	Cre17.g734805.t1.1	Cre17.g734805.t1.1		5078679,5078370,5078027,5077115,5075449,5074740,5072113,5071213,5069065	5078745,5078445,5078082,5077926,5076824,5075120,5073412,5071722,5070578	
chr17	5069065	5078745	5070482	5078426	-	Cre17.g734805.t2.1	Cre17.g734805.t2.1		5078679,5078375,5078043,5077115,5075449,5074740,5072113,5071213,5069065	5078745,5078445,5078082,5077926,5076824,5075120,5073412,5071722,5070578	
chr17	5078876	5081356	5078920	5080947	+	Cre17.g734821.t1.1	Cre17.g734821.t1.1		5078876,5079552,5079819,5080193,5080523,5080812	5078935,5079602,5079878,5080234,5080561,5081356	
chr17	5081620	5089382	5082526	5089157	-	Cre17.g734900.t1.2	Cre17.g734900.t1.2		5089061,5088625,5088164,5087783,5087464,5087101,5086760,5086370,5086201,5085815,5085514,5084966,5084398,5084002,5083591,5083136,5081620	5089382,5088705,5088253,5087899,5087508,5087189,5086853,5086486,5086275,5085953,5085566,5085088,5084499,5084109,5083671,5083249,5082673	
chr17	5081620	5089382	5082526	5089157	-	Cre17.g734900.t2.1	Cre17.g734900.t2.1		5089061,5088625,5088164,5087783,5087464,5087101,5086760,5086370,5085815,5085514,5084966,5084398,5084002,5083591,5083136,5081620	5089382,5088705,5088253,5087899,5087508,5087189,5086853,5086486,5085953,5085566,5085088,5084499,5084109,5083671,5083249,5082673	
chr17	5089536	5104545	5090406	5103684	+	Cre17.g734961.t1.1	Cre17.g734961.t1.1		5089536,5090204,5090809,5091700,5092173,5096677,5097163,5097443,5097748,5098343,5099422,5099789,5100196,5100578,5101105,5101841,5102244,5102796,5103430	5089698,5090514,5090906,5091766,5092244,5096772,5097244,5097513,5097928,5098436,5099476,5099904,5100380,5100693,5101551,5101996,5102484,5103044,5104545	May contain additional coding sequence in intronic N-island PMID: 27175017
chr17	5089536	5104545	5090406	5103684	+	Cre17.g734961.t2.1	Cre17.g734961.t2.1		5089536,5090204,5090809,5091700,5092173,5096677,5097163,5097443,5097748,5098343,5099422,5099789,5100196,5100578,5101105,5101841,5102244,5102796,5103430	5089694,5090514,5090906,5091766,5092244,5096772,5097244,5097513,5097928,5098436,5099476,5099904,5100380,5100693,5101551,5101996,5102484,5103044,5104545	May contain additional coding sequence in intronic N-island PMID: 27175017
chr17	5107310	5129685	5108788	5129609	-	Cre17.g735021.t1.1	Cre17.g735021.t1.1		5128095,5127436,5126931,5126129,5125742,5122138,5121714,5121445,5121072,5120721,5120180,5119675,5119297,5118620,5118181,5117648,5117230,5116691,5112779,5112325,5109977,5109190,5107310	5129685,5127799,5126988,5126507,5125810,5122237,5121938,5121509,5121139,5120818,5120293,5119833,5119398,5118790,5118238,5117796,5117313,5116747,5113264,5112453,5110825,5109627,5108902	
chr17	5124700	5129685	5124998	5129609	-	Cre17.g735021.t2.1	Cre17.g735021.t2.1		5128095,5127436,5126931,5126129,5125742,5124700	5129685,5127799,5126988,5126507,5125810,5125038	
chr17	5129740	5134945	5130185	5134888	-	KIN1-2	Cre17.g735200.t1.2		5134635,5134299,5133704,5133231,5132710,5132423,5132065,5131581,5131204,5129740	5134945,5134385,5133849,5133366,5132790,5132508,5132170,5131714,5131295,5130942	kinesin-1 family
chr17	5135033	5137445	5136374	5137175	-	Cre17.g735250.t1.2	Cre17.g735250.t1.2		5137172,5137011,5135033	5137445,5137061,5136932	
chr17	5138400	5140411	5138868	5139822	+	CYN15	Cre17.g735283.t1.1		5138400,5139042,5139497,5139822	5138875,5139134,5139585,5140411	Similar to peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 1551864, PMID:154795]; similar to At3g148 (AtCYP38) and other thylakoid lumen-localized cyclophilins; an expressed frameshifted pseudogene
chr17	5138400	5140567	5138868	5139822	+	CYN15	Cre17.g735283.t2.1		5138400,5139042,5139497,5139822	5138875,5139134,5139585,5140567	Similar to peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 1551864, PMID:154795]; similar to At3g148 (AtCYP38) and other thylakoid lumen-localized cyclophilins; an expressed frameshifted pseudogene
chr17	5142510	5148365	5143372	5148135	-	FAP164	Cre17.g735350.t1.1		5148102,5147795,5147328,5146864,5146489,5145858,5145503,5145111,5144473,5142510	5148365,5148010,5147417,5146968,5146644,5145998,5145601,5145233,5144547,5143450	Flagellar Associated Protein, found in the flagellar proteome.  Possible phospholipase A2 or serine endopeptidase activity
chr17	5148430	5153245	5150906	5152463	-	Cre17.g735375.t1.2	Cre17.g735375.t1.2		5152058,5148430	5153245,5151905	
chr17	5154410	5158988	5154666	5158625	+	VPS2B	Cre17.g735400.t1.2		5154410,5154821,5155065,5155784,5156099,5156677,5157391,5157982,5158278,5158625	5154691,5154865,5155255,5155852,5156137,5156733,5157492,5158031,5158365,5158988	Expressed Protein. Similar to yeast Vps2p/Did4p, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes)
chr17	5159040	5170951	5159154	5169681	+	SUB14	Cre17.g735450.t1.1		5159040,5159784,5160135,5160483,5161163,5161648,5162367,5162835,5163334,5164433,5164795,5165127,5165467,5165832,5166234,5166722,5168560,5168951,5169384	5159556,5159867,5160204,5160920,5161288,5162128,5162508,5162926,5163464,5164557,5164920,5165201,5165599,5166052,5166513,5168220,5168709,5169103,5170951	
chr17	5171620	5177556	5173001	5176119	+	Cre17.g735500.t1.2	Cre17.g735500.t1.2		5171620,5172826	5172362,5177556	
chr17	5178500	5184399	5178954	5183202	+	Cre17.g735550.t1.1	Cre17.g735550.t1.1		5178500,5179301,5179520,5179813,5180257,5180577,5180904	5179089,5179369,5179606,5179989,5180369,5180742,5184399	
chr17	5185560	5190912	5186194	5190290	+	TGL21	Cre17.g735600.t1.2		5185560,5186090,5186883,5187392,5187775,5188052,5188493,5188880,5189260,5190172	5185814,5186547,5187134,5187478,5187868,5188156,5188622,5188964,5189919,5190912	
chr17	5191290	5203741	5191576	5203366	+	Cre17.g735650.t1.1	Cre17.g735650.t1.1		5191290,5191827,5192053,5192404,5192728,5193108,5196004,5201852,5202823	5191753,5191977,5192282,5192611,5192942,5195843,5201658,5202670,5203741	
chr17	5203743	5205649	5204544	5205459	-	Cre17.g735700.t1.2	Cre17.g735700.t1.2		5205300,5204933,5203743	5205649,5204998,5204715	
chr17	5205970	5211211	5206164	5210960	+	EFH11	Cre17.g735750.t1.2		5205970,5206341,5206583,5208018,5208608,5208963,5209674,5210083	5206214,5206413,5207757,5208304,5208738,5209127,5209870,5211211	
chr17	5211277	5222549	5211815	5222004	-	Cre17.g735800.t1.2	Cre17.g735800.t1.2		5221950,5221515,5220999,5220543,5220207,5219799,5219004,5218656,5218141,5217710,5217264,5216759,5214085,5213751,5213297,5212778,5212519,5211277	5222549,5221595,5221052,5220608,5220264,5219887,5219094,5218747,5218267,5217946,5217397,5217023,5216444,5213789,5213364,5212899,5212571,5212280	
chr17	5222660	5227731	5222953	5227095	+	Cre17.g735850.t1.1	Cre17.g735850.t1.1		5222660,5223296,5223945,5224806,5226355,5226800	5223115,5223433,5224573,5226144,5226518,5227731	
chr17	5227734	5228759	5228091	5228302	-	Cre17.g735876.t1.1	Cre17.g735876.t1.1		5227734	5228759	
chr17	5229344	5236229	5229990	5235953	-	Cre17.g735900.t1.1	Cre17.g735900.t1.1		5236186,5233850,5232798,5232464,5229344	5236229,5235964,5233768,5232537,5232170	
chr17	5236830	5238987	5236975	5237924	+	Cre17.g735950.t1.2	Cre17.g735950.t1.2		5236830	5238987	
chr17	5239304	5246829	5241327	5246269	-	Cre17.g736000.t1.1	Cre17.g736000.t1.1		5246578,5246444,5246252,5245729,5245376,5245133,5239304	5246829,5246470,5246308,5245825,5245411,5245177,5244816	
chr17	5239304	5246829	5241327	5246269	-	Cre17.g736000.t2.1	Cre17.g736000.t2.1		5246578,5246444,5246252,5245729,5245376,5245133,5239304	5246829,5246470,5246308,5245825,5245411,5245174,5244816	
chr17	5246950	5256721	5247093	5256078	+	Cre17.g736050.t1.2	Cre17.g736050.t1.2		5246950,5247842,5248280,5248942,5249838,5250393,5251806,5253396,5253804,5254797,5255460	5247226,5247936,5248513,5249015,5250166,5251378,5253120,5253594,5254460,5255205,5256721	
chr17	5256724	5281149	5257214	5280697	-	CEP17	Cre17.g736100.t1.1		5280659,5280150,5279797,5279182,5278549,5278295,5278065,5277433,5277126,5276603,5276211,5275556,5275160,5274669,5274028,5273495,5273082,5272716,5272197,5271861,5271126,5270788,5270595,5270193,5269758,5269043,5268785,5268132,5267885,5267193,5266601,5265839,5265033,5264512,5264055,5263492,5263234,5262352,5261805,5261453,5261153,5260710,5260349,5260014,5259602,5259276,5258684,5257435,5256724	5281149,5280257,5280005,5279339,5278914,5278378,5278142,5277898,5277213,5276802,5276335,5275718,5275282,5274962,5274357,5273542,5273187,5272852,5272302,5271937,5271512,5270910,5270620,5270351,5269968,5269447,5268910,5268524,5267950,5267653,5266781,5266264,5265649,5264791,5264219,5263823,5263302,5262584,5262096,5261714,5261247,5260879,5260565,5260111,5259791,5259418,5259093,5258420,5257244	Cysteine-type endopeptidase, papain type
chr17	5281650	5293681	5281750	5293240	+	POL1-2	Cre17.g736150.t1.1		5281650,5284149,5286304,5287377,5288146,5288431,5288877,5289245,5289593,5290234,5290616,5291079,5291723,5292138,5292598,5293102	5283691,5286044,5286926,5287965,5288238,5288658,5289007,5289329,5289718,5290356,5290684,5291302,5291813,5292239,5292705,5293681	Homologous to prokaryotic DNA polymerase I.  Involved in DNA repair and  functions in mitochondria (or chloroplast)
chr17	5293730	5304981	5294676	5303747	+	Cre17.g736250.t1.2	Cre17.g736250.t1.2		5293730,5294316,5294635,5295112,5295949,5297220,5297734,5298184,5300053,5301124,5301428,5301835,5302105,5302685,5303015,5303498	5294048,5294394,5294712,5295214,5296238,5297460,5297881,5299110,5300832,5301229,5301494,5301899,5302179,5302732,5303074,5304981	
chr17	5305370	5316701	5305628	5316463	+	Cre17.g736300.t1.1	Cre17.g736300.t1.1		5305370,5305817,5306323,5306718,5307439,5307859,5308342,5309029,5309647,5310090,5310905,5311698,5313169,5313501	5305740,5305963,5306513,5306930,5307584,5307960,5308498,5309281,5309787,5310743,5311555,5312714,5313238,5316701	
chr17	5316750	5323359	5316804	5322754	+	Cre17.g736329.t1.2	Cre17.g736329.t1.2		5316750,5320369,5321748	5320012,5321545,5323359	
chr17	5323504	5329689	5324233	5329618	-	Cre17.g736350.t1.1	Cre17.g736350.t1.1		5327007,5325010,5323504	5329689,5326818,5324865	
chr17	5329964	5344219	5330409	5343822	-	SCC3	Cre17.g736400.t1.1		5343754,5343361,5342986,5342793,5342535,5342214,5341775,5341343,5341025,5340664,5340172,5339587,5338983,5338680,5338294,5338120,5337765,5337377,5337031,5336593,5336269,5335797,5335287,5334805,5334399,5334061,5333493,5333081,5332149,5331701,5329964	5344219,5343598,5343253,5342836,5342603,5342306,5341935,5341484,5341137,5340787,5340381,5339751,5339386,5338743,5338473,5338176,5337843,5337492,5337288,5336763,5336400,5336006,5335437,5334992,5334512,5334193,5333677,5333182,5332661,5332028,5331527	
chr17	5344809	5356060	5345184	5355330	+	Cre17.g736437.t1.1	Cre17.g736437.t1.1		5344809,5345435,5345890,5346211,5346474,5346907,5347286,5347540,5352383,5352792	5345264,5345593,5345983,5346277,5346499,5347025,5347385,5352060,5352601,5356060	
chr17	5356062	5369178	5356974	5368430	-	Cre17.g736474.t1.1	Cre17.g736474.t1.1		5368251,5367987,5367611,5366334,5365940,5365174,5364753,5360923,5360558,5360169,5356062	5369178,5368133,5367685,5366450,5366036,5365292,5364849,5364423,5360731,5360360,5360037	
chr17	5369289	5375700	5369388	5374355	+	Cre17.g736511.t1.1	Cre17.g736511.t1.1		5369289,5369522	5369424,5375700	
chr17	5375846	5379848	5377295	5379627	-	Cre17.g736550.t1.1	Cre17.g736550.t1.1		5379571,5379138,5378394,5377878,5375846	5379848,5379281,5378619,5377947,5377396	
chr17	5379935	5386948	5381021	5386861	-	Cre17.g736584.t1.1	Cre17.g736584.t1.1		5386847,5386401,5385950,5385582,5385184,5384864,5384193,5379935	5386948,5386536,5386098,5385678,5385308,5384963,5384630,5384051	
chr17	5387086	5388748	5387678	5388120	-	Cre17.g736618.t1.2	Cre17.g736618.t1.2		5387086	5388748	
chr17	5388883	5398528	5389367	5398443	-	Cre17.g736650.t1.2	Cre17.g736650.t1.2		5398404,5397831,5397497,5397232,5396913,5396587,5396335,5396096,5395867,5395169,5394937,5394674,5394352,5394071,5393794,5393445,5393122,5392815,5392518,5392271,5391924,5391709,5391552,5391297,5390993,5390077,5389707,5388883	5398528,5398014,5397634,5397326,5396974,5396679,5396413,5396170,5395914,5395275,5394997,5394775,5394423,5394163,5393851,5393563,5393275,5392877,5392621,5392341,5392065,5391792,5391597,5391450,5391100,5390221,5389907,5389523	
chr17	5398683	5401198	5399186	5401172	-	Cre17.g736700.t1.2	Cre17.g736700.t1.2		5400833,5400610,5400338,5399771,5398683	5401198,5400690,5400414,5400024,5399527	
chr17	5401263	5421658	5402159	5421267	-	Cre17.g736750.t1.1	Cre17.g736750.t1.1		5421171,5420858,5420466,5420139,5419981,5419791,5419574,5419313,5419019,5418723,5418501,5417971,5417820,5417513,5417213,5416626,5416275,5415806,5415536,5415348,5414843,5414612,5414210,5413866,5413284,5412585,5412241,5412043,5411609,5411064,5410545,5410023,5409435,5408845,5408426,5408182,5407983,5407525,5407123,5406803,5406476,5406067,5405741,5404884,5404562,5404293,5404098,5403927,5403656,5403262,5402894,5401263	5421658,5420933,5420621,5420257,5420010,5419826,5419619,5419410,5419115,5418907,5418544,5418342,5417855,5417630,5417323,5417105,5416439,5416052,5415627,5415413,5415192,5414701,5414441,5414063,5413676,5412854,5412405,5412121,5411901,5411516,5410874,5410280,5409891,5409266,5408704,5408268,5408030,5407826,5407423,5406953,5406692,5406334,5405848,5405501,5404624,5404382,5404136,5403947,5403760,5403431,5403044,5402660	
chr17	5423412	5433238	5424321	5432625	-	Cre17.g736800.t1.1	Cre17.g736800.t1.1		5432523,5432069,5431783,5431573,5431317,5430429,5428904,5428543,5428361,5427697,5427335,5426857,5426698,5423412	5433238,5432350,5431894,5431606,5431392,5431109,5429278,5428788,5428408,5428221,5427496,5427075,5426704,5426657	
chr17	5433327	5434628	5433538	5434323	-	Cre17.g736850.t1.2	Cre17.g736850.t1.2		5434314,5433327	5434628,5433799	
chr17	5435599	5437883	5436192	5437694	-	Cre17.g736900.t1.2	Cre17.g736900.t1.2		5437604,5437198,5436810,5436450,5435599	5437883,5437314,5436974,5436554,5436333	
chr17	5437999	5443540	5438379	5443518	+	Cre17.g736950.t1.1	Cre17.g736950.t1.1		5437999,5439844,5440526,5440849,5441532,5442771,5443081,5443359	5439661,5440277,5440633,5441193,5442533,5442932,5443149,5443540	
chr17	5437999	5443540	5438379	5443518	+	Cre17.g736950.t2.1	Cre17.g736950.t2.1		5437999,5439844,5440526,5440849,5441538,5442771,5443081,5443359	5439661,5440277,5440633,5441193,5442533,5442932,5443149,5443540	
chr17	5443543	5445478	5444551	5445410	-	Cre17.g737000.t1.2	Cre17.g737000.t1.2		5445369,5445204,5444892,5443543	5445478,5445285,5444966,5444569	
chr17	5445579	5450409	5446073	5449752	+	Cre17.g737050.t1.2	Cre17.g737050.t1.2		5445579,5445798,5446022,5446397,5446772,5447100,5447398,5447840,5448222,5448638,5449017,5449228,5449441	5445689,5445890,5446085,5446472,5446836,5447177,5447571,5447980,5448369,5448741,5449071,5449278,5450409	
chr17	5450433	5452488	5450696	5452137	-	Cre17.g737084.t1.2	Cre17.g737084.t1.2		5450433	5452488	
chr17	5452687	5456928	5453050	5456725	-	FAP127	Cre17.g737100.t1.2		5456655,5456503,5456300,5455910,5455539,5454896,5454436,5454050,5453610,5453307,5452687	5456928,5456563,5456426,5456052,5455767,5455112,5454556,5454197,5453824,5453442,5453101	Found in the flagellar proteome; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation; weakly Similar Nuclear Structural Protein; Mouse MNS1 is required for sperm formation
chr17	5457089	5461468	5457218	5460946	+	Cre17.g737150.t1.1	Cre17.g737150.t1.1		5457089,5457363,5457554,5457718,5457864,5458002,5458889,5459068,5460518,5460862	5457287,5457473,5457604,5457791,5457918,5458697,5458987,5460411,5460727,5461468	
chr17	5461519	5465780	5461684	5465156	+	Cre17.g737200.t1.2	Cre17.g737200.t1.2		5461519,5461881,5462073,5462508,5462766,5463234,5463533,5463732,5464164,5465039	5461743,5461947,5462210,5462609,5462942,5463395,5463601,5463974,5464853,5465780	
chr17	5465784	5474398	5466497	5474250	-	EFG5	Cre17.g737250.t1.2		5474187,5474004,5473466,5473021,5472639,5472106,5471751,5471045,5470773,5470455,5470074,5469565,5469219,5468962,5468581,5468247,5467856,5467662,5467323,5467041,5465784	5474398,5474103,5473782,5473221,5472773,5472208,5471892,5471190,5470870,5470544,5470253,5469773,5469312,5469082,5468777,5468405,5468041,5467732,5467476,5467106,5466635	similar to translation elongation factor EFG, but N-terminal domain identifies it as U5-116kDa protein; involved in pre-mRNA splicing
chr17	5474453	5477578	5475005	5477483	-	Cre17.g737300.t1.1	Cre17.g737300.t1.1		5477475,5476708,5476450,5475521,5475252,5474453	5477578,5477231,5476536,5476257,5475422,5475122	
chr17	5479299	5486128	5480416	5486096	-	Cre17.g737350.t1.1	Cre17.g737350.t1.1		5486010,5485588,5484879,5484535,5484080,5483526,5483158,5482870,5482663,5482074,5481822,5481385,5481208,5480907,5479299	5486128,5485718,5485417,5484727,5484415,5483951,5483282,5482922,5482760,5482512,5481918,5481622,5481260,5481002,5480743	
chr17	5487083	5490088	5487154	5489980	-	Cre17.g737351.t2.1	Cre17.g737351.t2.1		5489897,5489165,5489003,5488800,5488596,5488099,5487839,5487523,5487083	5490088,5489278,5489070,5488825,5488673,5488184,5487936,5487573,5487393	
chr17	5486953	5490088	5486971	5489980	-	Cre17.g737351.t1.2	Cre17.g737351.t1.2		5489897,5489165,5489003,5488800,5488596,5488099,5487839,5487523,5487218,5486953	5490088,5489278,5489070,5488825,5488673,5488184,5487936,5487573,5487393,5487004	
chr17	5486229	5487080	5486350	5486552	+	Cre17.g737353.t1.1	Cre17.g737353.t1.1		5486229	5487080	
chr17	5490189	5494180	5492778	5494162	+	Cre17.g737376.t1.1	Cre17.g737376.t1.1		5490189,5492571,5492942,5494124	5490968,5492781,5493188,5494180	
chr17	5494200	5505318	5495316	5505073	-	Cre17.g737400.t1.1	Cre17.g737400.t1.1		5505066,5504398,5504195,5503991,5503522,5503262,5502979,5502674,5502428,5502151,5501965,5501770,5501504,5501068,5499791,5499447,5498998,5498426,5498058,5497770,5497562,5496974,5496731,5496294,5496117,5495811,5494200	5505318,5504673,5504220,5504068,5503607,5503359,5503029,5502849,5502456,5502217,5501995,5501838,5501606,5501198,5500890,5499639,5499327,5498869,5498182,5497822,5497659,5497412,5496827,5496531,5496169,5495906,5495643	
chr17	5494200	5505318	5495316	5504392	-	Cre17.g737400.t2.1	Cre17.g737400.t2.1		5505066,5504541,5504385,5504195,5503991,5503522,5503262,5502979,5502674,5502428,5502151,5501965,5501770,5501504,5501068,5499791,5499447,5498998,5498426,5498058,5497770,5497562,5496974,5496731,5496294,5496117,5495811,5494200	5505318,5504724,5504430,5504220,5504068,5503607,5503359,5503029,5502849,5502456,5502217,5501995,5501838,5501606,5501198,5500890,5499639,5499327,5498869,5498182,5497822,5497659,5497412,5496827,5496531,5496169,5495906,5495643	
chr17	5526841	5535212	5526905	5534680	+	Cre17.g737463.t1.1	Cre17.g737463.t1.1		5526841,5527358,5527704,5528104,5534680	5526933,5527482,5527867,5528817,5535212	
chr17	5550941	5570846	5551254	5570035	+	Cre17.g737525.t1.1	Cre17.g737525.t1.1		5550941,5551656,5551866,5552196,5552542,5552942,5553225,5553590,5553901,5554190,5554379,5554757,5555096,5555269,5555500,5555803,5556136,5556372,5556682,5557169,5557478,5557657,5557851,5558178,5558395,5558632,5558933,5559248,5559472,5559641,5564438,5564962,5565896,5566354,5567512,5567825,5568128,5568944,5569344,5569657	5551282,5551771,5551920,5552320,5552705,5553084,5553431,5553688,5554028,5554281,5554533,5554824,5555158,5555342,5555615,5555845,5556215,5556419,5556881,5557292,5557519,5557684,5557939,5558243,5558468,5558757,5559078,5559384,5559583,5564374,5564766,5565813,5566207,5566869,5567683,5567925,5568687,5569178,5569489,5570846	
chr17	5550941	5570846	5551254	5570035	+	Cre17.g737525.t2.1	Cre17.g737525.t2.1		5550941,5551656,5551866,5552196,5552542,5552942,5553225,5553590,5553901,5554190,5554379,5554757,5555096,5555269,5555500,5556136,5556372,5556682,5557169,5557478,5557657,5557851,5558178,5558395,5558632,5558933,5559248,5559472,5559641,5564438,5564962,5565896,5566354,5567512,5567825,5568128,5568944,5569344,5569657	5551282,5551771,5551920,5552320,5552705,5553084,5553431,5553688,5554028,5554281,5554533,5554824,5555158,5555342,5555631,5556215,5556419,5556881,5557292,5557519,5557684,5557939,5558243,5558468,5558757,5559078,5559384,5559583,5564374,5564766,5565813,5566207,5566869,5567683,5567925,5568687,5569178,5569489,5570846	
chr17	5572267	5576877	5572538	5576582	-	SOM6	Cre17.g737650.t1.1		5576357,5575819,5575337,5574993,5574649,5574032,5573601,5573242,5572813,5572267	5576877,5575959,5575450,5575064,5574717,5574118,5573645,5573373,5572932,5572625	
chr17	5576924	5591140	5577647	5590666	-	Cre17.g737702.t1.1	Cre17.g737702.t1.1		5590605,5590382,5590041,5589613,5589205,5588875,5588438,5588144,5587832,5587621,5587330,5587071,5586892,5586506,5586280,5585890,5585579,5585393,5585144,5584946,5584568,5584306,5584025,5583578,5582394,5581352,5580958,5580296,5579985,5579743,5578981,5578490,5578199,5576924	5591140,5590497,5590095,5589737,5589368,5589017,5588641,5588242,5587959,5587712,5587484,5587204,5586965,5586717,5586327,5586086,5585711,5585434,5585257,5584996,5584782,5584451,5584161,5583896,5582647,5582203,5581269,5580811,5580156,5579843,5579540,5578724,5578344,5578034	
chr17	5591645	5592480	5592012	5592442	-	Cre17.g737752.t1.1	Cre17.g737752.t1.1		5591645	5592480	
chr17	5592731	5596476	5592928	5595730	+	Cre17.g737800.t1.2	Cre17.g737800.t1.2		5592731,5593179,5593524,5593956,5594870,5595548	5592965,5593329,5593722,5594189,5595425,5596476	
chr17	5596738	5601100	5597113	5600848	-	Cre17.g737850.t1.1	Cre17.g737850.t1.1		5600579,5599832,5599150,5598864,5598189,5597991,5596738	5601100,5600432,5599579,5598987,5598624,5598062,5597830	
chr17	5602735	5607030	5603692	5606880	-	AGG2	Cre17.g738000.t1.1		5606840,5606596,5606468,5606242,5606017,5605721,5605585,5605324,5605123,5604209,5602735	5607030,5606656,5606505,5606257,5606108,5605755,5605627,5605419,5605191,5604967,5603692	Paralog of AGG4; isolated as a detergent resistant membrane protein from flagellar membranes; required for phototactic orientation
chr17	5602735	5607030	5603074	5606880	-	AGG2	Cre17.g738000.t2.1		5606840,5606612,5606242,5606017,5605721,5605585,5605324,5605123,5604547,5602735	5607030,5606656,5606257,5606108,5605755,5605627,5605419,5605191,5604967,5603074	Paralog of AGG4; isolated as a detergent resistant membrane protein from flagellar membranes; required for phototactic orientation
chr17	5602735	5607030	5603692	5606880	-	AGG2	Cre17.g738000.t3.1		5606840,5606612,5606242,5606017,5605721,5605585,5605324,5605123,5604209,5602735	5607030,5606656,5606257,5606108,5605755,5605627,5605419,5605191,5604967,5603692	Paralog of AGG4; isolated as a detergent resistant membrane protein from flagellar membranes; required for phototactic orientation
chr17	5602735	5607030	5603692	5606880	-	AGG2	Cre17.g738000.t4.1		5606840,5606596,5606017,5605721,5605585,5605324,5605123,5604209,5602735	5607030,5606656,5606108,5605755,5605627,5605419,5605191,5604967,5603692	Paralog of AGG4; isolated as a detergent resistant membrane protein from flagellar membranes; required for phototactic orientation
chr17	5611103	5613880	5611726	5613785	-	AGG4	Cre17.g738050.t1.2		5613774,5613653,5613314,5612972,5612691,5612168,5611103	5613880,5613684,5613329,5613041,5612758,5612295,5611815	paralog of AGG2; isolated as a detergent resistant membrane protein from flagellar membranes; required for phototactic orientation
chr17	5615978	5624070	5617341	5623401	-	Cre17.g738100.t1.1	Cre17.g738100.t1.1		5623883,5622633,5622319,5621938,5620669,5620137,5615978	5624070,5623538,5622472,5622107,5621766,5620406,5619813	
chr17	5624971	5638777	5625171	5637797	+	ERM10	Cre17.g738150.t1.1		5624971,5625553,5625885,5626260,5626570,5626932,5627321,5628367,5628747,5629263,5630030,5630705,5631057,5632292,5633182,5633536,5633798,5634088,5634633,5635302,5635694,5636080,5636521,5636977,5637383,5637724	5625335,5625652,5625946,5626362,5626606,5627073,5628089,5628486,5629049,5629829,5630501,5630799,5632018,5632748,5633334,5633593,5633919,5634209,5634670,5635424,5635772,5636218,5636653,5637119,5637507,5638777	transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration)
chr17	5638902	5642810	5639713	5642592	-	Cre17.g738200.t1.2	Cre17.g738200.t1.2		5642226,5641674,5641139,5638902	5642810,5641910,5641198,5640697	
chr17	5642911	5646430	5642944	5646414	+	Cre17.g738250.t1.1	Cre17.g738250.t1.1		5642911,5643357,5643966,5644574,5645037,5645427,5646186	5643169,5643488,5644070,5644647,5645172,5645594,5646430	
chr17	5646435	5647290	5646820	5647225	-	RPP1	Cre17.g738300.t1.2		5647032,5646435	5647290,5646951	Cytosolic 80S ribosomal protein P1; Cytosolic 60S large ribosomal subunit protein P1
chr17	5647391	5652378	5647563	5651577	+	PGA5	Cre17.g738350.t1.2		5647391,5648037,5648866,5649242,5649633,5650088,5650389,5650618,5650795,5651142,5651517	5647703,5648124,5648939,5649338,5649702,5650170,5650478,5650671,5650846,5651311,5652378	
chr17	5652385	5655301	5652810	5655238	-	Cre17.g738400.t1.2	Cre17.g738400.t1.2		5655073,5654789,5654521,5654074,5653592,5653172,5652385	5655301,5654853,5654607,5654177,5653649,5653292,5652855	
chr17	5655411	5661834	5655539	5659236	+	Cre17.g738450.t1.1	Cre17.g738450.t1.1		5655411,5655961,5656176,5656597,5656832,5657128,5657546,5657856	5655888,5656022,5656403,5656661,5656946,5657292,5657665,5661834	
chr17	5661959	5667620	5662479	5667544	-	Cre17.g738500.t1.1	Cre17.g738500.t1.1		5667325,5667172,5666905,5666650,5666096,5665108,5664782,5664492,5661959	5667620,5667228,5667002,5666728,5666308,5665900,5664852,5664561,5664308	
chr17	5667731	5670819	5667912	5670224	+	Cre17.g738550.t1.1	Cre17.g738550.t1.1		5667731,5668348,5669043,5669498,5669887	5668042,5668772,5669209,5669635,5670819	
chr17	5671161	5679072	5671985	5677252	+	RLS5	Cre17.g738600.t1.1		5671161,5671794,5672323,5676846,5677114	5671619,5672129,5676522,5676908,5679072	Member of a family of proteins [PMID: 1672695, 1662271] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR77 SAND; PF1342).
chr17	5679535	5682595	5681410	5682524	-	Cre17.g738632.t1.2	Cre17.g738632.t1.2		5682419,5681959,5679535	5682595,5682021,5681644	
chr17	5682771	5685822	5682874	5685467	+	Cre17.g738650.t1.2	Cre17.g738650.t1.2		5682771,5683081,5683590,5684041,5684338	5682934,5683422,5683903,5684169,5685822	
chr17	5689168	5694453	5689997	5693793	-	Cre17.g738700.t1.2	Cre17.g738700.t1.2		5689168	5694453	
chr17	5694508	5700786	5695130	5700664	-	Cre17.g738751.t1.1	Cre17.g738751.t1.1		5700500,5699375,5698805,5698116,5697616,5697083,5696437,5694508	5700786,5699435,5698871,5698218,5697724,5697202,5696578,5695324	
chr17	5700884	5705245	5700925	5704591	+	Cre17.g738800.t1.2	Cre17.g738800.t1.2		5700884,5701264,5701919,5702396,5703283,5703604,5704024,5704379	5701072,5701707,5702206,5703001,5703342,5703749,5704118,5705245	
chr17	5705644	5711535	5706545	5710281	+	Cre17.g738850.t1.2	Cre17.g738850.t1.2		5705644,5706247,5706892,5707647,5710113	5705888,5706742,5707500,5709831,5711535	
chr17	5711765	5714152	5712932	5713999	-	Cre17.g738900.t1.2	Cre17.g738900.t1.2		5713798,5713327,5711765	5714152,5713407,5713070	
chr17	5714314	5719615	5714586	5717825	+	Cre17.g738950.t1.2	Cre17.g738950.t1.2		5714314,5715744,5716118,5716656,5717013,5717427,5717771	5714589,5715852,5716238,5716776,5717096,5717585,5719615	
chr17	5720289	5725133	5722424	5724759	-	Cre17.g739000.t1.1	Cre17.g739000.t1.1		5724522,5724356,5724076,5723682,5723367,5722893,5720289	5725133,5724412,5724165,5723741,5723447,5723021,5722604	
chr17	5720289	5724972	5722424	5724759	-	Cre17.g739000.t2.1	Cre17.g739000.t2.1		5724522,5724356,5724076,5723682,5723367,5722893,5720289	5724972,5724412,5724165,5723741,5723447,5723021,5722604	
chr17	5726294	5740005	5726509	5739703	+	Cre17.g739050.t1.1	Cre17.g739050.t1.1		5726294,5726844,5727159,5727618,5732536,5734078,5737286,5738017,5738444,5739070	5726628,5726938,5727418,5731379,5733785,5736789,5737725,5738267,5738812,5740005	
chr17	5740054	5742851	5740209	5741617	+	Cre17.g739100.t1.1	Cre17.g739100.t1.1		5740054,5740551,5740820,5741075,5741155,5741524	5740481,5740725,5740936,5741081,5741249,5742851	
chr17	5742858	5752245	5743732	5751841	-	CTPA5	Cre17.g739150.t1.2		5751497,5750680,5750169,5749794,5749342,5748612,5747785,5747340,5746914,5746589,5745784,5745403,5745032,5744767,5742858	5752245,5750785,5750249,5749835,5749471,5748731,5748197,5747407,5747005,5746698,5745885,5745480,5745087,5744849,5743809	C-terminal peptidase, Tail-specific peptidase, possibly the D1 processing peptidase; contains a PDZ domain
chr17	5753292	5756893	5753689	5756638	-	FAP293	Cre17.g739201.t1.1		5756577,5755864,5755204,5754633,5754348,5753292	5756893,5756426,5755344,5754785,5754437,5753800	Flagellar Associated Protein, found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr17	5757017	5768925	5757137	5767521	+	FAP402	Cre17.g739250.t1.1		5757017,5757337,5757674,5758096,5759531,5760397,5760899,5761140,5761426,5762049,5762689,5763129,5763570,5764046,5764625,5765195,5766012,5766494,5766807,5767413	5757182,5757576,5757727,5758202,5759609,5760549,5761002,5761269,5761656,5762171,5762767,5763152,5763751,5764150,5764684,5765288,5766152,5766557,5766912,5768925	
chr17	5768928	5771583	5769639	5771474	-	Cre17.g739300.t1.2	Cre17.g739300.t1.2		5771405,5771101,5770588,5770038,5768928	5771583,5771161,5770682,5770169,5769711	
chr17	5771684	5776085	5771743	5775056	+	Cre17.g739350.t1.1	Cre17.g739350.t1.1		5771684,5772124,5772435,5773229,5774666,5774949	5771972,5772214,5772622,5774370,5774756,5776085	
chr17	5776218	5782833	5777420	5782606	-	Cre17.g739400.t1.2	Cre17.g739400.t1.2		5779961,5779379,5779098,5778361,5776218	5782833,5779532,5779171,5778737,5777926	
chr17	5782934	5791375	5788301	5790233	+	Cre17.g739426.t1.1	Cre17.g739426.t1.1		5782934,5783299,5784022,5788245,5789102,5790152	5783196,5783368,5784132,5788373,5789209,5791375	May contain additional coding sequence in intronic N-island PMID: 27175017
chr17	5791484	5794025	5791749	5793279	+	DRT1	Cre17.g739450.t1.1		5791484,5791736,5792016,5792522,5793021	5791658,5791825,5792180,5792592,5794025	DR1 (Down-regulator of transcription 1) (SP:Q01658) is a phosphoprotein that interacts with TBP (TATA box-binding protein) of TFIID and prevents the formation of an active transcription complex by precluding the entry of TFIIA and/or TFIIB into the preinitiation complex. The interaction of DR1 with the corepressor DRAP1, is required for corepressor function and appears to stabilize the TBP-DR1-DNA complex
chr17	5795184	5797505	5795820	5796908	+	Cre17.g739457.t1.2	Cre17.g739457.t1.2		5795184,5795458,5795746,5796479	5795350,5795499,5795943,5797505	
chr17	5797518	5801463	5799852	5800831	-	Cre17.g739466.t1.2	Cre17.g739466.t1.2		5801157,5800711,5797518	5801463,5800905,5800155	
chr17	5804798	5808923	5805245	5808826	-	Cre17.g739500.t1.1	Cre17.g739500.t1.1		5808815,5804798	5808923,5808762	
chr17	5801518	5804743	5802971	5804152	-	Cre17.g739515.t1.1	Cre17.g739515.t1.1		5804456,5804035,5801518	5804743,5804220,5803478	
chr17	5809025	5813833	5809573	5813809	-	CPLD12	Cre17.g739550.t1.1		5813533,5813354,5812842,5812104,5811566,5811036,5810536,5810254,5809025	5813833,5813440,5812988,5812189,5811641,5811115,5810668,5810323,5809734	
chr17	5813888	5827523	5814037	5827414	-	Cre17.g739551.t1.2	Cre17.g739551.t1.2		5827132,5826493,5824861,5821585,5819343,5818817,5818043,5817582,5817101,5814451,5813888	5827523,5826959,5826144,5824758,5821381,5819070,5818597,5817800,5817379,5816824,5814297	
chr17	5828434	5831472	5828811	5830935	+	Cre17.g739600.t1.2	Cre17.g739600.t1.2		5828434,5829060,5829595,5830055,5830613	5828899,5829298,5829704,5830267,5831472	
chr17	5831716	5838483	5833311	5838369	-	MFT1	Cre17.g739650.t1.2		5838316,5837955,5837605,5836445,5835375,5835063,5834603,5834071,5831716	5838483,5838237,5837691,5837353,5836248,5835172,5834704,5834197,5833736	putative MATE efflux family protein; related to Arabidopsis ferric reductase defective (FRD3)
chr17	5838718	5849713	5840358	5849398	-	Cre17.g739700.t1.1	Cre17.g739700.t1.1		5849297,5848372,5847758,5847002,5846333,5845845,5844841,5844272,5843682,5843178,5842710,5842266,5841874,5841335,5841073,5838718	5849713,5848935,5847796,5847333,5846519,5845902,5845579,5844458,5843740,5843492,5842911,5842435,5841935,5841525,5841131,5840840	
chr17	5850148	5864766	5850352	5864131	+	Cre17.g739752.t1.1	Cre17.g739752.t1.1		5850148,5850876,5851609,5852310,5852759,5853309,5854058,5854511,5854969,5855441,5856058,5856434,5856753,5860971,5861348,5861775,5862436,5862894,5863534,5864016	5850589,5850911,5851752,5852387,5852898,5853423,5854210,5854635,5855148,5855526,5856122,5856509,5856814,5861088,5861470,5861914,5862536,5862990,5863685,5864766	May contain additional coding sequence in intronic N-island PMID: 27175017
chr17	5864782	5869727	5865872	5869641	-	OPR106	Cre17.g739800.t1.1		5869524,5868269,5866382,5864782	5869727,5868844,5868200,5866234	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; part of Chr_15 NCL gene cluster; a pseudogene in many lab and wilds strains(non canonical second and third introns)
chr17	5869785	5874967	5870354	5874617	-	MOT47	Cre17.g739850.t1.2		5874584,5874350,5874029,5873643,5873199,5872842,5872564,5872008,5871533,5871021,5869785	5874967,5874514,5874184,5873729,5873318,5872889,5872650,5872156,5871623,5871135,5870677	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr17	5875088	5883069	5875514	5882018	+	Cre17.g739900.t1.2	Cre17.g739900.t1.2		5875088,5875473,5877224,5877657,5878016,5878369,5878610,5879152,5879519,5879695,5879988,5880287,5880765,5881172,5881553,5881903	5875292,5877003,5877414,5877878,5878175,5878484,5879033,5879353,5879558,5879784,5880142,5880628,5880930,5881368,5881657,5883069	
chr17	5883108	5891339	5883154	5890406	+	Cre17.g739950.t1.1	Cre17.g739950.t1.1		5883108,5883357,5883786,5885063,5885483,5885854,5886179,5886955,5887525,5887885,5888049,5888287,5888828,5889266,5889589,5889965,5890291	5883172,5883431,5884950,5885253,5885704,5886013,5886294,5887378,5887729,5887924,5888138,5888441,5889160,5889431,5889776,5890069,5891339	
chr17	5891388	5903458	5891530	5902590	+	Cre17.g740000.t1.1	Cre17.g740000.t1.1		5891388,5891649,5891962,5892350,5893348,5893845,5894281,5896671,5897179,5897721,5898752	5891563,5891804,5892036,5892964,5893662,5893934,5896414,5896879,5897412,5898388,5903458	
chr17	5903618	5913244	5903766	5912352	+	Cre17.g740050.t1.1	Cre17.g740050.t1.1		5903618,5904001,5904330,5904761,5904975,5905305,5905732,5905980,5906395,5906742,5907179,5907508,5907868,5908234,5908434,5908649,5909113,5909726,5910013,5910578,5910961	5903820,5904156,5904595,5904872,5905119,5905560,5905816,5906167,5906494,5906872,5907271,5907680,5908033,5908266,5908491,5908771,5909496,5909812,5910337,5910706,5913244	
chr17	5913285	5918457	5913884	5918073	-	Cre17.g740100.t1.1	Cre17.g740100.t1.1		5918244,5913285	5918457,5918185	
chr17	5919482	5925277	5919998	5925041	-	Cre17.g740150.t1.1	Cre17.g740150.t1.1		5923439,5922616,5922276,5919482	5925277,5923222,5922371,5921977	
chr17	5925337	5926877	5925720	5926811	-	FAP390	Cre17.g740187.t1.1		5926790,5925337	5926877,5926287	Found in Cr and Volvox but not strongly conserved elsewhere
chr17	5927532	5933587	5928267	5933352	-	Cre17.g740224.t1.1	Cre17.g740224.t1.1		5931708,5930885,5930545,5927532	5933587,5931491,5930640,5930246	
chr17	5933648	5946717	5934031	5946032	-	FAP365	Cre17.g740261.t1.1		5946235,5945915,5945419,5944866,5944474,5943974,5943549,5941900,5941401,5940997,5940378,5939677,5938152,5937493,5937256,5936475,5935953,5933648	5946717,5946038,5945650,5945155,5944533,5944101,5943618,5942016,5941475,5941087,5940504,5939790,5938255,5937589,5937310,5936582,5936033,5934598	Found in Cr and Volvox but not strongly conserved elsewhere
chr17	5947448	5952939	5947710	5952920	+	Cre17.g740300.t1.1	Cre17.g740300.t1.1		5947448,5948678,5948963,5950152,5950915,5951356,5952701	5947851,5948784,5949829,5950598,5951080,5952507,5952939	
chr17	5952988	5956279	5953120	5953406	+	Cre17.g740323.t1.1	Cre17.g740323.t1.1		5952988	5956279	
chr17	5956306	5957227	5956626	5956843	-	Cre17.g740344.t1.2	Cre17.g740344.t1.2		5956306	5957227	
chr17	5957379	5964357	5957533	5964028	-	Cre17.g740350.t1.1	Cre17.g740350.t1.1		5964028,5961305,5960673,5959734,5959006,5957379	5964357,5963908,5961099,5960530,5959531,5958852	
chr17	5964458	5965959	5964567	5965300	+	Cre17.g740390.t1.1	Cre17.g740390.t1.1		5964458,5964768,5965147	5964689,5964918,5965959	
chr17	5966151	5972657	5966235	5972524	-	Cre17.g740430.t1.1	Cre17.g740430.t1.1		5971339,5970714,5969448,5969049,5968468,5968041,5967374,5967036,5966151	5972657,5970923,5970174,5969207,5968586,5968224,5967576,5967114,5966492	
chr17	5972718	5975077	5972815	5974992	-	Cre17.g740470.t1.1	Cre17.g740470.t1.1		5974930,5974612,5974182,5973892,5973568,5973319,5972718	5975077,5974648,5974375,5973980,5973602,5973405,5973115	
chr17	5975208	5984556	5975488	5983753	+	CDC27	Cre17.g740510.t1.1		5975208,5975680,5976121,5976507,5976910,5978257,5978761,5979106,5979607,5980155,5980618,5981499,5981852,5982310,5982677,5983319,5983627	5975608,5975752,5976224,5976651,5978049,5978417,5978910,5979357,5979787,5980335,5980738,5981588,5981979,5982475,5982760,5983417,5984556	ts-lethal mutations block anaphase (PMID 25336509); May contain additional coding sequence in intronic N-island PMID: 27175017
chr17	5984711	5989527	5985194	5989338	-	Cre17.g740550.t1.1	Cre17.g740550.t1.1		5989003,5988464,5987970,5987590,5987069,5986705,5986297,5986015,5985628,5984711	5989527,5988635,5988140,5987678,5987201,5986796,5986383,5986069,5985785,5985306	
chr17	5989648	5999969	5990248	5999247	+	MOT50	Cre17.g740600.t1.2		5989648,5991317,5992005,5993352,5993762,5994908,5995311,5995667,5995962,5996475,5997055,5997477,5997801,5998887	5990964,5991736,5992412,5993446,5993858,5995020,5995399,5995748,5996056,5996654,5997141,5997530,5998358,5999969	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr17	5989648	6000129	5990248	5999247	+	MOT50	Cre17.g740600.t2.1		5989648,5991317,5992005,5993352,5993762,5994908,5995311,5995667,5995962,5996475,5997055,5997477,5997801,5998887	5990964,5991736,5992412,5993446,5993858,5995020,5995399,5995748,5996056,5996654,5997141,5997530,5998358,6000129	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr17	6000408	6006859	6000787	6006342	+	Cre17.g740650.t1.1	Cre17.g740650.t1.1		6000408,6005413	6002849,6006859	
chr17	6007240	6010302	6008509	6010217	-	FAP336	Cre17.g740700.t1.2		6010157,6009847,6009502,6008995,6007240	6010302,6009942,6009582,6009099,6008569	
chr17	6010456	6016247	6010514	6015747	+	Cre17.g740750.t1.2	Cre17.g740750.t1.2		6010456,6010706,6010899,6011291	6010589,6010777,6011020,6016247	
chr17	6016456	6021274	6016797	6020808	+	Cre17.g740800.t1.1	Cre17.g740800.t1.1		6016456,6017031,6017296,6017521,6017607,6018036,6018453,6018894,6019336,6019678,6020040,6020406	6016880,6017132,6017407,6017533,6017737,6018123,6018583,6019103,6019476,6019863,6020225,6021274	
chr17	6021450	6028235	6022019	6028086	-	Cre17.g740850.t1.2	Cre17.g740850.t1.2		6028017,6027841,6027604,6021450	6028235,6027915,6027719,6027348	
chr17	6028282	6031025	6028832	6030199	-	Cre17.g740900.t1.2	Cre17.g740900.t1.2		6030559,6029775,6029485,6029179,6028968,6028282	6031025,6030327,6029631,6029348,6029001,6028832	
chr17	6031206	6032817	6031437	6032683	+	Cre17.g740926.t1.1	Cre17.g740926.t1.1		6031206,6031561,6031816,6032308,6032478	6031451,6031738,6032004,6032399,6032817	
chr17	6033333	6035915	6033910	6035756	-	ELIP6	Cre17.g740950.t1.2		6035639,6035476,6035124,6034701,6034426,6034161,6033333	6035915,6035538,6035329,6034910,6034495,6034250,6034012	belongs to chlorophyll A-B binding protein superfamily; this gene was reported in PMID: 15509845 as transiently expressed in high light; Genbank AB159049.
chr17	6036284	6038575	6036968	6038337	-	Cre17.g741000.t1.2	Cre17.g741000.t1.2		6038267,6038071,6037866,6037400,6036284	6038575,6038186,6037985,6037640,6037156	
chr17	6040694	6043854	6041231	6043609	-	COV1	Cre17.g741050.t1.1		6043468,6043292,6043068,6042674,6042222,6041931,6041539,6040694	6043854,6043344,6043143,6042752,6042325,6042053,6041665,6041293	Integral membrane protein of unknown function, with homologs in plants and bacteria; in Arabidopsis, COV1 (CONTINUOUS VASCULAR RING) also called LCV1 is involved in auxin mediated signaling to control stem vascular tissue pattern formation - pfam4367, DUF52
chr17	6044006	6046647	6044110	6046108	+	Cre17.g741100.t1.2	Cre17.g741100.t1.2		6044006,6044392,6044860,6045219,6045480	6044126,6044664,6044975,6045310,6046647	
chr17	6046716	6062445	6047435	6061445	+	Cre17.g741150.t1.1	Cre17.g741150.t1.1		6046716,6047416,6048507,6048808,6049059,6049367,6049759,6050073,6050357,6050661,6051032,6051311,6053727,6054549,6057693,6058354,6058660,6059006	6047121,6048293,6048636,6048918,6049175,6049476,6049885,6050206,6050428,6050837,6051100,6053506,6054305,6057455,6058036,6058453,6058812,6062445	
chr17	6046716	6062445	6047435	6061445	+	Cre17.g741150.t2.1	Cre17.g741150.t2.1		6046716,6047416,6048507,6048808,6049059,6049367,6049759,6050073,6050357,6050661,6051032,6051311,6053727,6054549,6057693,6058354,6058660,6059006	6047121,6048293,6048636,6048918,6049175,6049476,6049885,6050206,6050410,6050837,6051100,6053506,6054305,6057455,6058036,6058453,6058812,6062445	
chr17	6062643	6066303	6063113	6066184	-	EBP1	Cre17.g741200.t1.2		6066169,6065985,6065687,6065407,6065053,6064756,6063997,6063498,6062643	6066303,6066074,6065743,6065451,6065115,6064839,6064245,6063623,6063227	Microtubule plus-end binding protein; localizes to the tips of the flagella and the proximal ends of basal bodies. Genbank accession AY219336, PMID: 14614822
chr17	6066446	6076052	6066677	6075150	+	PHR6	Cre17.g741250.t1.1		6066446,6067251,6067598,6067971,6068378,6068648,6069032,6069304,6069816,6070135,6071391,6072056,6072558,6072816,6073269,6073944,6074423,6074962	6067097,6067322,6067708,6068120,6068458,6068798,6069123,6069441,6069942,6070942,6071513,6072179,6072629,6072901,6073647,6074036,6074528,6076052	FO synthase; member of the Radical SAM superfamily; enzyme has not been officially assigned an enzyme commission number, but falls under this category EC 2.5.1.-.  Euryarchae FO is synthesized by two proteins encoded by separate genes called cofG and cofH (cof = coen
chr17	6076070	6077045	6076733	6077001	-	Cre17.g741272.t1.1	Cre17.g741272.t1.1		6076070	6077045	
chr17	6077740	6079450	6078333	6078949	-	Cre17.g741293.t1.2	Cre17.g741293.t1.2		6077740	6079450	
chr17	6079596	6087207	6079817	6086432	+	Cre17.g741300.t1.1	Cre17.g741300.t1.1		6079596,6079924,6080472,6083245,6083612,6084393,6085093,6085564,6086179	6079835,6080056,6082537,6083352,6084046,6084775,6085222,6085787,6087207	
chr17	6087210	6097515	6088522	6097390	-	KIN7-4	Cre17.g741350.t1.2		6097358,6097077,6096256,6095684,6094969,6094650,6094253,6093917,6093506,6093069,6092497,6092129,6091743,6088936,6087210	6097515,6097219,6096755,6095989,6095321,6094756,6094383,6094062,6093657,6093194,6092756,6092210,6091918,6091540,6088710	kinesin-7 family
chr17	6097590	6113295	6098703	6111733	-	Cre17.g741400.t1.1	Cre17.g741400.t1.1		6112504,6112219,6111613,6110871,6110508,6109833,6109445,6109196,6108892,6108507,6107901,6107272,6107000,6106568,6106281,6105810,6105346,6104886,6104547,6104193,6102548,6102105,6101709,6101181,6100451,6099894,6099548,6097590	6113295,6112409,6111925,6111045,6110610,6110185,6109512,6109294,6109008,6108545,6108368,6107697,6107110,6106660,6106406,6105911,6105462,6104971,6104652,6104255,6103936,6102258,6101878,6101576,6100836,6100188,6099724,6099309	
chr17	6113892	6122435	6114561	6122055	-	CPN60B1	Cre17.g741450.t1.2		6122032,6121907,6121620,6121204,6120034,6119687,6119260,6118834,6117874,6117582,6117177,6116695,6116234,6115605,6115341,6114935,6113892	6122435,6121951,6121692,6121254,6120108,6119737,6119376,6118899,6117966,6117710,6117359,6116844,6116341,6115847,6115457,6115014,6114703	
chr17	6122510	6131715	6123912	6130958	-	KIL7	Cre17.g741500.t1.1		6131306,6130778,6130129,6129610,6129065,6127897,6126687,6126316,6126064,6125357,6125186,6124772,6124244,6122510	6131715,6131198,6130575,6129922,6129433,6128907,6127696,6126447,6126147,6125746,6125234,6125073,6124637,6124139	Putative kinesin motor-like protein, closest match to kinesin-7 family.  No sequence gaps to account for poor assignment by HMM search
chr17	6134036	6143151	6134304	6142621	+	Cre17.g741550.t1.2	Cre17.g741550.t1.2		6134036,6134457,6134598,6134926,6135234,6135706,6136168,6136566,6137416,6137762,6138495,6138969,6139271,6139680,6140089,6140494,6140912,6141382,6141711,6142075,6142477	6134385,6134517,6134729,6135029,6135497,6135775,6136238,6137198,6137565,6138335,6138718,6139063,6139394,6139737,6140165,6140616,6141018,6141469,6141758,6142146,6143151	
chr17	6143610	6149465	6144311	6149158	-	Cre17.g741601.t1.1	Cre17.g741601.t1.1		6149264,6149122,6148413,6147776,6146891,6146410,6146236,6145850,6145424,6144833,6143610	6149465,6149170,6148528,6147928,6146942,6146592,6146282,6146003,6145587,6145257,6144568	
chr17	6153046	6154438	6153076	6154006	+	Cre17.g741650.t1.2	Cre17.g741650.t1.2		6153046,6153459,6153748	6153302,6153616,6154438	
chr17	6155086	6163707	6155717	6162853	+	KIL22	Cre17.g741700.t1.1		6155086,6155579,6156207,6156637,6157033,6157660,6160890,6161112,6161410,6161665,6162437	6155463,6155981,6156422,6156784,6157488,6160760,6160958,6161297,6161523,6162202,6163707	Putative kinesin motor-like protein, closest match (though poor) to kinesin-14 family.  No sequence gaps to account for poor assignment by HMM search
chr17	6163710	6178975	6164862	6178204	-	Cre17.g741750.t1.1	Cre17.g741750.t1.1		6178696,6178560,6178360,6178188,6178011,6177720,6176486,6176207,6176006,6175608,6175050,6170435,6170085,6169467,6169158,6168854,6168370,6168067,6166037,6165549,6163710	6178975,6178617,6178456,6178251,6178063,6177848,6177541,6176305,6176080,6175880,6175490,6174877,6170249,6169856,6169271,6169042,6168660,6168189,6167851,6165901,6165340	
chr17	6179360	6188905	6180789	6188224	-	Cre17.g741800.t1.1	Cre17.g741800.t1.1		6188161,6187552,6187276,6186667,6186376,6185668,6185097,6179360	6188905,6187935,6187347,6186795,6186468,6186228,6185516,6184941	
chr17	6189595	6191994	6190183	6191575	+	HNR1	Cre17.g741850.t1.2		6189595,6190489,6190748,6191382	6190327,6190650,6191136,6191994	contains two RRM (RNP-1) RNA-binding motifs similar to human Heterogeneous Nuclear Ribonucleoprotein H3 (hnRNP H3)
chr17	6192392	6201254	6193966	6200949	-	Cre17.g741900.t2.1	Cre17.g741900.t2.1		6200927,6200643,6200169,6199829,6199501,6198898,6198503,6198012,6197345,6197031,6196628,6196261,6196093,6195928,6195699,6195482,6195290,6195052,6194824,6194655,6194270,6192392	6201254,6200751,6200250,6199985,6199532,6199280,6198684,6198303,6197795,6197072,6196833,6196508,6196123,6195939,6195747,6195544,6195301,6195103,6194879,6194684,6194358,6194060	
chr17	6191999	6201254	6193966	6200949	-	Cre17.g741900.t1.1	Cre17.g741900.t1.1		6200927,6200643,6200169,6199829,6199501,6198898,6198503,6198012,6197345,6197031,6196628,6196261,6196093,6195928,6195699,6195482,6195290,6195052,6194824,6194655,6194270,6191999	6201254,6200751,6200250,6199985,6199532,6199280,6198684,6198303,6197795,6197072,6196833,6196508,6196123,6195939,6195747,6195544,6195301,6195103,6194879,6194684,6194358,6194060	
chr17	6202565	6209206	6202798	6208664	+	BBS1	Cre17.g741950.t1.1		6202565,6203106,6203371,6203626,6203960,6204505,6204710,6205159,6205717,6206109,6206599,6206841,6207260,6208095,6208520	6202948,6203223,6203461,6203689,6204049,6204570,6204835,6205278,6205842,6206300,6206661,6206909,6207352,6208313,6209206	Component of the core BBSome complex that targets membrane proteins to cilia
chr17	6209215	6214624	6209910	6214497	-	MOT8	Cre17.g742000.t1.2		6213490,6212711,6211643,6211198,6210696,6210331,6209215	6214624,6213305,6212389,6211437,6210908,6210543,6210207	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr17	6214679	6216834	6215178	6216549	-	Cre17.g742050.t1.2	Cre17.g742050.t1.2		6216519,6216352,6215964,6215615,6215465,6214679	6216834,6216396,6216086,6215729,6215489,6215275	
chr17	6216889	6220084	6218115	6219433	-	Cre17.g742100.t1.2	Cre17.g742100.t1.2		6219346,6218932,6218647,6216889	6220084,6219132,6218754,6218325	
chr17	6220585	6222656	6220733	6222441	+	Cre17.g742116.t1.1	Cre17.g742116.t1.1		6220585,6222207	6220772,6222656	
chr17	6224382	6227724	6227293	6227540	-	Cre17.g742132.t1.1	Cre17.g742132.t1.1		6224382	6227724	
chr17	6227779	6230994	6227798	6230814	-	Cre17.g742150.t1.2	Cre17.g742150.t1.2		6230765,6230334,6229529,6228252,6227779	6230994,6230554,6230165,6229291,6228077	
chr17	6231862	6236965	6232360	6236894	-	Cre17.g742200.t1.1	Cre17.g742200.t1.1		6236816,6236132,6235812,6235473,6235240,6235003,6234694,6234369,6234019,6233727,6233418,6233036,6232744,6231862	6236965,6236227,6235907,6235557,6235313,6235054,6234785,6234441,6234188,6233801,6233509,6233204,6232830,6232513	
chr17	6238708	6243214	6240380	6243086	-	CDKG2	Cre17.g742250.t1.1		6242897,6242365,6241867,6241589,6241308,6240740,6238708	6243214,6242554,6242135,6241652,6241492,6241009,6240611	Chlamydomonas specific subfamily; AASTLRE motif.  Novel CDK subfamily.  Also identified from nitrogen starvation experiments as nitrogen-controlled-gene NCG9 [PMID: 11469597]
chr17	6243858	6247334	6244264	6247310	-	FAP179	Cre17.g742300.t1.1		6247262,6247071,6246937,6246805,6245907,6245610,6245452,6245087,6244814,6244563,6243858	6247334,6247172,6246944,6246852,6245976,6245635,6245464,6245104,6244880,6244711,6244375	Flagellar Associated Protein, found in the flagellar proteome.  Glutathione-S-transferase with possible prostaglandin-D synthase activity
chr17	6247570	6250084	6247753	6249841	-	Cre17.g742350.t1.2	Cre17.g742350.t1.2		6249652,6249327,6249095,6248122,6247570	6250084,6249520,6249164,6248900,6247859	
chr17	6250375	6271086	6250545	6270123	+	PTK17	Cre17.g742400.t1.1		6250375,6254324,6255107,6256753,6257626,6257849,6258516,6259063,6259365,6259681,6260300,6261199,6264677,6265350,6266275,6266515,6266755,6266942,6267321,6268423,6270123	6254101,6254917,6256626,6257493,6257664,6258318,6258795,6259173,6259506,6260134,6260956,6264489,6265088,6266087,6266343,6266562,6266778,6267133,6268127,6269032,6271086	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr17	6271165	6274562	6271465	6274248	+	Cre17.g742450.t1.1	Cre17.g742450.t1.1		6271165,6271456,6271738,6271943,6272277,6272530,6272858,6273168,6273453,6274137	6271339,6271513,6271758,6271980,6272324,6272599,6272914,6273234,6273610,6274562	
chr17	6274815	6280376	6275199	6280044	+	Cre17.g742500.t1.1	Cre17.g742500.t1.1		6274815,6275432,6276120,6278044,6278426,6279128	6275242,6275989,6277862,6278156,6278991,6280376	
chr17	6280379	6282526	6281140	6282301	-	Cre17.g742550.t1.2	Cre17.g742550.t1.2		6282052,6281790,6281549,6280379	6282526,6281936,6281597,6281325	
chr17	6282655	6288066	6282721	6287069	+	Cre17.g742600.t1.1	Cre17.g742600.t1.1		6282655,6283494,6283760,6283995,6284587,6284931,6285399,6286515,6286952	6283099,6283625,6283852,6284420,6284697,6285182,6286370,6286769,6288066	
chr17	6288079	6292624	6288605	6292495	-	Cre17.g742650.t1.1	Cre17.g742650.t1.1		6292395,6292258,6292007,6291747,6291364,6291070,6290758,6289843,6289586,6289244,6288814,6288079	6292624,6292285,6292128,6291861,6291613,6291182,6290909,6290546,6289696,6289444,6288984,6288695	
chr17	6292755	6304516	6292940	6303852	+	CGLD30	Cre17.g742700.t1.1		6292755,6294174,6294374,6294577,6294902,6295253,6295473,6295808,6296162,6296438,6297259,6297603,6297996,6298491,6298723,6299106,6299592,6300861,6301133,6301432,6302136,6302494,6303334,6303570,6303821	6294056,6294251,6294452,6294641,6295112,6295308,6295645,6295957,6296286,6297069,6297375,6297740,6298112,6298605,6298856,6299254,6299733,6300944,6301219,6301887,6302316,6303212,6303450,6303673,6304516	Conserved in the Green Lineage and Diatoms
chr17	6292755	6304516	6292940	6303821	+	CGLD30	Cre17.g742700.t2.1		6292755,6294174,6294374,6294577,6294902,6295253,6295473,6295808,6296162,6296438,6297259,6297603,6297996,6298491,6298723,6299106,6299592,6300861,6301133,6301432,6302136,6302494,6303334,6303570,6303821	6294056,6294251,6294452,6294641,6295112,6295308,6295645,6295957,6296286,6297069,6297375,6297740,6298112,6298605,6298856,6299254,6299733,6300944,6301219,6301887,6302316,6303212,6303450,6303719,6304516	Conserved in the Green Lineage and Diatoms
chr17	6304864	6305974	6305343	6305659	-	Cre17.g742750.t1.2	Cre17.g742750.t1.2		6304864	6305974	
chr17	6307515	6310672	6307900	6309377	+	Cre17.g742800.t1.2	Cre17.g742800.t1.2		6307515	6310672	belongs to a small gene family specific of Chlamydomonas
chr17	6311475	6315824	6312782	6315600	-	Cre17.g742866.t1.1	Cre17.g742866.t1.1		6315060,6314746,6313005,6311475	6315824,6314982,6313098,6312862	
chr17	6331995	6332761	6332188	6332381	+	Cre17.g742932.t1.1	Cre17.g742932.t1.1		6331995	6332761	
chr17	6332925	6334146	6332991	6334120	+	Cre17.g742998.t1.1	Cre17.g742998.t1.1		6332925	6334146	
chr17	6336425	6340848	6336523	6340577	+	Cre17.g743064.t1.1	Cre17.g743064.t1.1		6336425,6337958,6340299	6337868,6339037,6340848	
chr17	6340895	6344606	6341377	6344440	+	Cre17.g743130.t1.1	Cre17.g743130.t1.1		6340895,6341598,6342093,6344017	6341408,6341767,6343910,6344606	
chr17	6500634	6506738	6501671	6506519	-	Cre17.g743200.t1.2	Cre17.g743200.t1.2		6506475,6506230,6506036,6504961,6504528,6504226,6503565,6503059,6502489,6502270,6500634	6506738,6506276,6506155,6505799,6504848,6504415,6504071,6503442,6502751,6502407,6502181	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr17	6506879	6509473	6507116	6509055	+	Cre17.g743250.t1.2	Cre17.g743250.t1.2		6506879,6507466,6507812,6508217,6508672	6507340,6507666,6508062,6508465,6509473	
chr17	6509609	6512950	6509680	6512756	+	Cre17.g743269.t1.1	Cre17.g743269.t1.1		6509609,6510303,6510603,6511323,6512727	6510214,6510518,6510659,6512163,6512950	
chr17	6519906	6527148	6520876	6526652	-	Cre17.g743288.t1.1	Cre17.g743288.t1.1		6526644,6526308,6525833,6524980,6524700,6523434,6522418,6521923,6520966,6519906	6527148,6526424,6526022,6525282,6524754,6524136,6523182,6522091,6521610,6520876	
chr17	6522521	6527128	6523182	6525960	-	Cre17.g743307.t2.1	Cre17.g743307.t2.1		6526332,6525833,6525243,6524980,6524700,6523434,6522521	6527128,6526022,6525282,6525046,6524754,6524136,6523182	
chr17	6519906	6527128	6520876	6525960	-	Cre17.g743307.t1.1	Cre17.g743307.t1.1		6526332,6525833,6525243,6524980,6524700,6523434,6522418,6521923,6520966,6519906	6527128,6526022,6525282,6525046,6524754,6524136,6523182,6522091,6521610,6520876	
chr17	6558599	6559665	6559099	6559529	+	Cre17.g743346.t1.2	Cre17.g743346.t1.2		6558599,6558999,6559412	6558899,6559264,6559665	
chr17	6588592	6590594	6588920	6590226	+	Cre17.g743397.t1.1	Cre17.g743397.t1.1		6588592,6589062,6589390,6589819,6590121	6588961,6589106,6589436,6589865,6590594	
chr17	6588592	6590704	6588920	6590226	+	Cre17.g743397.t2.1	Cre17.g743397.t2.1		6588592,6589062,6589390,6589819,6590121	6588961,6589106,6589436,6589865,6590704	
chr17	6590807	6594212	6591428	6594001	-	Cre17.g743447.t1.1	Cre17.g743447.t1.1		6592849,6590807	6594212,6591902	
chr17	6596523	6599774	6596554	6599359	+	Cre17.g743497.t1.1	Cre17.g743497.t1.1		6596523,6598874,6599350	6598508,6599262,6599774	
chr17	6596523	6598404	6596554	6598371	+	Cre17.g743497.t2.1	Cre17.g743497.t2.1		6596523,6598278	6598207,6598404	
chr17	6600763	6608673	6601218	6607420	+	Cre17.g743547.t1.1	Cre17.g743547.t1.1		6600763,6601677,6602056,6602598,6602906,6603286,6603579,6603848,6604200,6604641,6604883,6605285,6605662,6606035,6606359,6607081,6607390	6601383,6601829,6602266,6602657,6603021,6603360,6603612,6604030,6604471,6604747,6605015,6605432,6605801,6606127,6606505,6607158,6608673	
chr17	6609377	6612605	6609779	6611587	+	Cre17.g743597.t1.1	Cre17.g743597.t1.1		6609377,6610618,6611221	6610358,6610923,6612605	
chr17	6613458	6617462	6614650	6616980	-	Cre17.g743647.t1.1	Cre17.g743647.t1.1		6616559,6616097,6615206,6613458	6617462,6616347,6615323,6615027	
chr17	6619733	6624164	6619854	6621771	+	Cre17.g743697.t1.1	Cre17.g743697.t1.1		6619733,6620819,6621171	6619915,6620892,6624164	
chr17	6625733	6628854	6626331	6628177	+	Cre17.g743747.t1.1	Cre17.g743747.t1.1		6625733,6626969,6627492,6627800	6626752,6627219,6627609,6628854	
chr17	6628857	6645832	6630420	6645701	-	FMO8	Cre17.g743797.t1.1		6645526,6644690,6644083,6643716,6643454,6643049,6642515,6642044,6641490,6641060,6640803,6640481,6639995,6639461,6638917,6638177,6635408,6634072,6633577,6631686,6628857	6645832,6644802,6644430,6643787,6643561,6643302,6642750,6642127,6641620,6641125,6640861,6640569,6640071,6639813,6639142,6638598,6636797,6635265,6633878,6633312,6631488	Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification
chr17	6646013	6652056	6646066	6650822	+	Cre17.g743847.t1.1	Cre17.g743847.t1.1		6646013,6646495,6646940,6647185,6647685,6648269,6648603,6649454,6649709,6650080,6650333	6646171,6646527,6647014,6647298,6647780,6648371,6649055,6649534,6649779,6650142,6652056	
chr17	6652103	6657794	6652149	6657189	+	PRX7	Cre17.g743897.t1.1		6652103,6652639,6652804,6653164,6653426,6654296,6654656,6655005,6655245,6655563,6655920,6656279,6656736,6657108	6652377,6652678,6652883,6653217,6653499,6654373,6654719,6655041,6655312,6655649,6656032,6656345,6656828,6657794	Related to thioredoxin-dependent peroxide reductase, mitochondrial precursor (Perioredoxin 3) (Antioxidant protein 1) (AOP-1) (MER5 protein)(PRX III) (PDX3)(TDX)
chr17	6657797	6664132	6658282	6663818	-	Cre17.g743947.t1.1	Cre17.g743947.t1.1		6663348,6662862,6661890,6659067,6657797	6664132,6663139,6662668,6661774,6658907	
chr17	6664312	6666562	6664544	6666057	-	Cre17.g743997.t1.1	Cre17.g743997.t1.1		6666447,6666191,6665949,6665387,6664982,6664667,6664312	6666562,6666326,6666073,6665751,6665102,6664868,6664544	
chr17	6664312	6666562	6664544	6666057	-	Cre17.g743997.t2.1	Cre17.g743997.t2.1		6666447,6666191,6665949,6665368,6664982,6664667,6664312	6666562,6666326,6666073,6665751,6665102,6664868,6664544	
chr17	6669073	6670954	6669481	6670326	+	Cre17.g744047.t1.1	Cre17.g744047.t1.1		6669073,6669764,6670012,6670314	6669516,6669836,6670104,6670954	
chr17	6680347	6686092	6681189	6685369	-	Cre17.g744097.t1.1	Cre17.g744097.t1.1		6685348,6685200,6684840,6684481,6684234,6683814,6683526,6683138,6682884,6682498,6682112,6681804,6681538,6680347	6686092,6685264,6684938,6684567,6684320,6683892,6683660,6683232,6682962,6682593,6682254,6681878,6681610,6681288	
chr17	6687107	6705452	6687648	6705225	-	Cre17.g744147.t1.1	Cre17.g744147.t1.1		6705156,6704420,6703964,6703586,6703073,6702669,6702375,6702029,6701656,6701318,6700966,6700484,6700199,6699867,6699554,6699215,6698786,6698385,6698050,6697589,6697161,6696818,6696470,6696063,6695738,6695250,6694846,6694496,6694203,6693791,6693453,6693018,6692709,6692229,6691887,6691514,6691039,6690593,6690155,6689844,6689351,6688746,6688308,6687936,6687107	6705452,6704512,6704134,6703678,6703246,6702758,6702449,6702169,6701765,6701523,6701084,6700703,6700317,6699929,6699682,6699387,6698921,6698546,6698175,6697760,6697300,6696934,6696559,6696196,6695855,6695469,6694981,6694631,6694384,6693929,6693586,6693206,6692843,6692400,6692020,6691688,6691200,6690754,6690307,6690003,6689562,6689033,6688532,6688055,6687681	
chr17	6706363	6711334	6706415	6710883	+	Cre17.g744197.t1.1	Cre17.g744197.t1.1		6706363,6707596,6709776	6707013,6709493,6711334	
chr17	6713845	6723422	6715717	6723343	-	Cre17.g744247.t1.1	Cre17.g744247.t1.1		6723177,6722967,6722629,6722203,6721245,6720854,6720415,6719605,6719163,6718716,6718382,6718013,6717607,6717082,6716227,6713845	6723422,6723079,6722871,6722322,6721872,6720973,6720557,6720226,6719419,6719059,6718521,6718213,6717730,6717205,6716367,6715891	
chr17	6723471	6727562	6723666	6727209	-	Cre17.g744297.t1.1	Cre17.g744297.t1.1		6726899,6726382,6725513,6725131,6724837,6724560,6723471	6727562,6726557,6725992,6725244,6724953,6724613,6724242	
chr17	6727617	6728942	6727743	6728762	-	Cre17.g744347.t1.1	Cre17.g744347.t1.1		6728749,6727617	6728942,6728639	
chr17	6729093	6731874	6729351	6731481	+	Cre17.g744397.t1.1	Cre17.g744397.t1.1		6729093,6729855,6730161,6730612,6730875,6731349	6729636,6729913,6730323,6730641,6731096,6731874	
chr17	6731943	6749195	6732443	6748520	+	Cre17.g744447.t1.1	Cre17.g744447.t1.1		6731943,6732440,6733706,6734137,6734712,6735275,6735842,6736148,6736842,6737158,6737612,6738128,6738682,6738987,6739301,6739626,6740112,6740615,6741018,6741315,6741706,6742132,6742917,6743413,6743721,6744143,6744474,6744990,6745486,6746117,6746628,6747202,6747622,6748121,6748340	6732333,6732647,6733813,6734207,6734799,6735438,6735918,6736270,6736965,6737215,6737746,6738301,6738848,6739076,6739355,6739787,6740246,6740789,6741109,6741381,6741770,6742284,6743009,6743505,6743834,6744240,6744543,6745044,6745591,6746231,6746786,6747321,6747739,6748170,6749195	
chr17	6749883	6754085	6749960	6753246	+	Cre17.g744497.t1.1	Cre17.g744497.t1.1		6749883,6750053,6750689,6751127,6751948,6752485,6753036	6749978,6750322,6750880,6751307,6751997,6752586,6754085	
chr17	6754772	6758343	6754863	6757186	+	Cre17.g744547.t1.1	Cre17.g744547.t1.1		6754772,6755382,6756164,6756990	6755043,6755515,6756238,6758343	
chr17	6758346	6760011	6758528	6759674	-	Cre17.g744597.t1.1	Cre17.g744597.t1.1		6759496,6759122,6758346	6760011,6759191,6758595	
chr17	6760212	6767343	6760898	6765533	+	Cre17.g744647.t1.1	Cre17.g744647.t1.1		6760212,6761475,6761879,6762397,6762913,6763201,6764037,6764739	6761123,6761732,6762060,6762535,6762962,6763833,6764581,6767343	
chr17	6767426	6772721	6769291	6772461	-	Cre17.g744697.t1.1	Cre17.g744697.t1.1		6772082,6771694,6771400,6771037,6770710,6770177,6767426	6772721,6771962,6771558,6771165,6770832,6770593,6769912	
chr17	6774487	6776281	6774722	6775306	-	Cre17.g744747.t1.1	Cre17.g744747.t1.1		6776200,6775801,6775183,6774487	6776281,6775947,6775400,6774995	
chr17	6774487	6776321	6774722	6774900	-	Cre17.g744747.t2.1	Cre17.g744747.t2.1		6776200,6775801,6775183,6774487	6776321,6775947,6775254,6774995	
chr17	6776652	6785109	6776707	6783498	+	Cre17.g744797.t1.1	Cre17.g744797.t1.1		6776652,6776817,6777018,6777608,6778154,6781331,6782833,6783384	6776746,6776939,6777444,6778009,6780911,6782426,6783066,6785109	
chr17	6785522	6798583	6785732	6798287	+	SEC6	Cre17.g744847.t1.1		6785522,6785907,6787232,6787660,6787999,6788573,6789091,6789548,6789936,6790442,6790802,6791103,6791857,6792096,6792514,6793132,6793746,6794185,6794473,6794869,6795221,6795614,6795947,6796556,6797118,6797622,6798155	6785762,6786056,6787320,6787741,6788067,6788658,6789151,6789619,6789983,6790545,6790853,6791195,6791910,6792233,6792624,6793218,6793829,6794262,6794520,6794922,6795366,6795665,6796105,6796654,6797260,6797739,6798583	Expressed Protein. Similar to SEC6, a component of the exocyst complex involved in secretion/exocytosis.
chr17	6798586	6803061	6799408	6802587	-	Cre17.g744897.t1.1	Cre17.g744897.t1.1		6802879,6802260,6801747,6801403,6800810,6800164,6799750,6798586	6803061,6802777,6802070,6801534,6800920,6800370,6799872,6799546	
chr17	6803192	6805973	6803342	6805946	+	Cre17.g744947.t1.1	Cre17.g744947.t1.1		6803192,6804168,6804677,6805061	6803951,6804297,6804795,6805973	
chr17	6805976	6816781	6806468	6816623	-	Cre17.g744997.t1.1	Cre17.g744997.t1.1		6816203,6815823,6815362,6814420,6813793,6813409,6812783,6812188,6811778,6811409,6811072,6810657,6810056,6809549,6808955,6808169,6807632,6805976	6816781,6815945,6815516,6814644,6813930,6813563,6812895,6812268,6811862,6811475,6811187,6810811,6810244,6809604,6809063,6808250,6807825,6806633	
chr17	6816833	6817401	6816986	6817317	-	Cre17.g745047.t1.1	Cre17.g745047.t1.1		6816833	6817401	
chr17	6817607	6829424	6818706	6829313	-	Cre17.g745097.t1.1	Cre17.g745097.t1.1		6829303,6828737,6828518,6828242,6827853,6827624,6827098,6826743,6826464,6826107,6825792,6825404,6825094,6824785,6824532,6824082,6823867,6823508,6823034,6822218,6821926,6821598,6821218,6820851,6820406,6820143,6819647,6819366,6817607	6829424,6829070,6828532,6828368,6827941,6827710,6827197,6826871,6826544,6826165,6825852,6825484,6825132,6824939,6824646,6824149,6823944,6823607,6823162,6822298,6821987,6821664,6821298,6820898,6820510,6820229,6819708,6819479,6818857	
chr17	6830232	6832623	6830329	6832079	+	Cre17.g745147.t1.1	Cre17.g745147.t1.1		6830232,6830611,6831286	6830426,6831145,6832623	
chr17	6832700	6836201	6833938	6836021	-	Cre17.g745197.t1.1	Cre17.g745197.t1.1		6835897,6835321,6834679,6834231,6832700	6836201,6835710,6834794,6834423,6833976	
chr17	6836506	6839781	6837360	6839616	-	Cre17.g745247.t1.1	Cre17.g745247.t1.1		6839511,6836506	6839781,6838938	
chr17	6839932	6843653	6839985	6842742	+	Cre17.g745297.t1.1	Cre17.g745297.t1.1		6839932,6840342,6840596,6840928,6841217,6841854,6842149,6842742	6840181,6840383,6840634,6840951,6841701,6842015,6842439,6843653	
chr17	6843702	6850787	6844059	6850017	+	Cre17.g745347.t1.1	Cre17.g745347.t1.1		6843702,6844359,6844681,6844831,6844939,6845257,6845663,6846048,6846495,6847115,6847551,6847795,6848792,6849817	6844208,6844492,6844751,6844848,6845085,6845418,6845815,6846317,6847052,6847228,6847655,6848566,6849631,6850787	
chr17	6843702	6850787	6844059	6850017	+	Cre17.g745347.t2.1	Cre17.g745347.t2.1		6843702,6844359,6844681,6844939,6845257,6845663,6846048,6846495,6847115,6847551,6847795,6848792,6849817	6844208,6844492,6844751,6845085,6845418,6845815,6846317,6847052,6847228,6847655,6848566,6849631,6850787	
chr17	6851396	6854291	6851642	6854053	-	Cre17.g745397.t1.1	Cre17.g745397.t1.1		6853042,6851396	6854291,6852767	
chr17	6855222	6862749	6855595	6860221	+	MAPK4	Cre17.g745447.t1.1		6855222,6856310,6856640,6857297,6857665,6858082,6858317,6858650,6859021	6855774,6856409,6856798,6857425,6857857,6858141,6858438,6858805,6862749	Hypothetical Mitogen-Activated Protein Kinase Homolog 4
chr17	6863418	6869091	6865612	6868033	-	Cre17.g745497.t1.1	Cre17.g745497.t1.1		6868367,6867943,6867148,6866802,6866527,6863418	6869091,6868042,6867387,6866879,6866613,6866308	
chr17	6869222	6877472	6869468	6877077	+	Cre17.g745547.t1.1	Cre17.g745547.t1.1		6869222,6869636,6870026,6870557,6871345,6871937,6872429,6872822,6873198,6873842,6874150,6874503,6875380,6876737	6869562,6869700,6870179,6870678,6871606,6872101,6872529,6872880,6873477,6873932,6874328,6875124,6876529,6877472	
chr17	6877900	6881480	6878090	6881194	+	Cre17.g745597.t1.1	Cre17.g745597.t1.1		6877900,6878521,6878671,6878797,6879205,6879517,6879968	6878152,6878574,6878716,6878865,6879352,6879828,6881480	
chr17	6881486	6885581	6881691	6885419	-	Cre17.g745647.t1.1	Cre17.g745647.t1.1		6885320,6884620,6884243,6883921,6883424,6881486	6885581,6885066,6884302,6884022,6883738,6881865	
chr17	6885702	6893823	6885824	6892842	+	Cre17.g745697.t1.1	Cre17.g745697.t1.1		6885702,6886094,6886838,6887335,6887886,6888057,6888487,6888837,6889359,6889592,6889845,6890108,6890484,6890928,6891326,6891651,6892028,6892702	6885997,6886274,6886992,6887548,6887892,6888222,6888538,6888998,6889442,6889661,6889987,6890296,6890738,6891101,6891461,6891727,6892427,6893823	
chr17	6893972	6901139	6894063	6900817	+	Cre17.g745747.t1.1	Cre17.g745747.t1.1		6893972,6894957,6895936,6896138,6896670,6896928,6897357,6897633,6898164,6898444,6899424,6900017,6900602	6894615,6895717,6895975,6896470,6896753,6896982,6897511,6897821,6898226,6899211,6899687,6900416,6901139	
chr17	6893972	6901139	6894063	6900817	+	Cre17.g745747.t2.1	Cre17.g745747.t2.1		6893972,6894957,6895936,6896141,6896670,6896928,6897357,6897633,6898164,6898444,6899424,6900017,6900602	6894615,6895717,6895975,6896470,6896753,6896982,6897511,6897821,6898226,6899211,6899687,6900416,6901139	
chr17	6901213	6912831	6901990	6912738	-	Cre17.g745797.t1.1	Cre17.g745797.t1.1		6912735,6912566,6912371,6912106,6911839,6911175,6908660,6901213	6912831,6912589,6912433,6912192,6911943,6911525,6911002,6908545	
chr17	6912932	6914622	6913418	6914280	+	Cre17.g745847.t1.1	Cre17.g745847.t1.1		6912932,6913732,6914113,6914280	6913637,6913897,6914149,6914622	
chr17	6914666	6918761	6916764	6918514	-	Cre17.g745897.t1.1	Cre17.g745897.t1.1		6918304,6914666	6918761,6916800	
chr17	6918832	6931761	6920222	6931589	-	Cre17.g745947.t1.1	Cre17.g745947.t1.1		6931499,6931032,6930809,6930495,6930217,6929949,6929438,6926929,6918832	6931761,6931154,6930879,6930627,6930303,6930053,6929782,6929265,6926717	
chr17	6931854	6934171	6932100	6934070	-	Cre17.g745997.t1.1	Cre17.g745997.t1.1		6933060,6932687,6932314,6931854	6934171,6932801,6932553,6932184	
chr17	6934900	6959718	6935202	6959209	+	Cre17.g746047.t1.1	Cre17.g746047.t1.1		6934900,6935364,6935705,6936258,6939248,6939772,6940185,6940978,6941559,6942036,6942626,6943061,6943340,6944004,6944522,6944941,6945236,6945577,6946309,6946654,6947356,6947728,6948152,6948533,6948964,6949464,6949798,6950311,6950859,6951137,6951556,6952500,6952912,6953229,6953877,6954206,6956173,6956516,6956621,6957014,6957847,6958245,6958612	6935282,6935457,6935983,6939091,6939522,6939874,6940779,6941217,6941816,6942299,6942877,6943105,6943624,6944131,6944618,6944994,6945373,6945916,6946448,6946971,6947562,6947805,6948360,6948665,6949089,6949523,6950217,6950568,6950948,6951218,6952082,6952594,6952989,6953445,6954056,6955708,6956229,6956547,6956718,6957539,6957960,6958311,6959718	
chr17	6959850	6963011	6960494	6962636	+	Cre17.g746097.t1.1	Cre17.g746097.t1.1		6959850,6960366,6960968,6961238,6961579,6961748,6962636	6960136,6960834,6961114,6961407,6961612,6962225,6963011	
chr17	6964594	6973669	6965201	6973294	-	Cre17.g746147.t1.1	Cre17.g746147.t1.1		6973167,6972465,6971997,6971640,6970737,6969909,6968818,6968023,6964594	6973669,6973039,6972083,6971762,6971417,6970553,6969432,6968556,6967751	
chr17	6964594	6973669	6965201	6973294	-	Cre17.g746147.t2.1	Cre17.g746147.t2.1		6973167,6972465,6971997,6971640,6970737,6969909,6968818,6968023,6964594	6973669,6973039,6972083,6971762,6971417,6970550,6969432,6968556,6967751	
chr17	6973810	6979741	6973947	6979043	+	Cre17.g746197.t1.1	Cre17.g746197.t1.1		6973810,6974875,6975213,6975373,6976042,6976267,6977168,6977680,6978297,6978627	6974032,6975113,6975276,6975835,6976168,6976953,6977322,6978058,6978405,6979741	
chr17	6979764	6989749	6980399	6989703	-	Cre17.g746247.t1.1	Cre17.g746247.t1.1		6989552,6989250,6988907,6988222,6987577,6987229,6986737,6986218,6985364,6984726,6983975,6983290,6982742,6982210,6981844,6981286,6980944,6979764	6989749,6989368,6989036,6988439,6987702,6987324,6986844,6986290,6985710,6984791,6984199,6983477,6982853,6982300,6981973,6981340,6981029,6980460	May contain additional coding sequence in intronic N-island PMID: 27175017
chr17	6990241	6994579	6990615	6994455	-	Cre17.g746297.t1.1	Cre17.g746297.t1.1		6993534,6990241	6994579,6993276	
chr17	6994964	6999689	6996235	6999269	-	UNG1	Cre17.g746347.t1.1		6999419,6998885,6998173,6997918,6997173,6996761,6994964	6999689,6999295,6998523,6997965,6997314,6996938,6996377	Uracil DNA-glycosylase.  Prevents mutagenesis by eliminating uracil from DNA  by cleaving the N-glycosylic bond and triggering base-excision repair.  Uracil bases occur from cytosine deamination or misincorporation of dUMP residues.
chr17	6994964	6999689	6996235	6999269	-	UNG1	Cre17.g746347.t2.1		6999419,6998885,6998173,6997918,6997173,6996761,6994964	6999689,6999295,6998505,6997965,6997314,6996938,6996377	Uracil DNA-glycosylase.  Prevents mutagenesis by eliminating uracil from DNA  by cleaving the N-glycosylic bond and triggering base-excision repair.  Uracil bases occur from cytosine deamination or misincorporation of dUMP residues.
chr17	6999850	7003162	6999993	7002758	+	Cre17.g746397.t1.1	Cre17.g746397.t1.1		6999850,7000283,7000707,7001022,7001438,7001725,7002118,7002644	7000132,7000466,7000747,7001114,7001550,7001826,7002183,7003162	
chr17	7004186	7006159	7004956	7006058	-	Cre17.g746447.t1.1	Cre17.g746447.t1.1		7005728,7004186	7006159,7005322	
chr17	7006214	7008209	7007468	7007928	-	Cre17.g746497.t1.1	Cre17.g746497.t1.1		7008048,7007901,7006214	7008209,7007956,7007702	
chr17	7009739	7013345	7010327	7013174	-	Cre17.g746547.t1.1	Cre17.g746547.t1.1		7012189,7011727,7009739	7013345,7011887,7011485	
chr17	7013446	7022929	7013521	7021752	+	Cre17.g746597.t1.1	Cre17.g746597.t1.1		7013446,7014200,7014939,7015429,7015784,7016346,7016841,7017380,7018053,7018366,7018964,7019499,7020103,7020615,7020955,7021149,7021605	7013723,7014288,7014998,7015518,7015817,7016481,7016934,7017527,7018126,7018461,7019100,7019555,7020192,7020685,7020992,7021241,7022929	
chr17	7013446	7022929	7013521	7021752	+	Cre17.g746597.t2.1	Cre17.g746597.t2.1		7013446,7014200,7014939,7015429,7015784,7016346,7016841,7017380,7018053,7018366,7018964,7020103,7020615,7020955,7021149,7021605	7013723,7014288,7014998,7015518,7015817,7016481,7016934,7017527,7018126,7018461,7019100,7020192,7020685,7020992,7021241,7022929	
chr17	7023336	7030987	7023411	7029220	+	PUF2	Cre17.g746647.t1.1		7023336,7023818,7024063,7024230,7024531,7025009,7025510,7026118,7028587	7023701,7023935,7024131,7024283,7024782,7025248,7025903,7028279,7030987	RNA-binding protein of the Puf family, translational repressor, may affect mRNA stability
chr17	7023336	7030987	7023411	7029220	+	PUF2	Cre17.g746647.t2.1		7023336,7023818,7024063,7024230,7024531,7025009,7025525,7026118,7028587	7023701,7023935,7024131,7024283,7024782,7025248,7025903,7028279,7030987	RNA-binding protein of the Puf family, translational repressor, may affect mRNA stability
chr17	7031036	7038707	7031827	7037499	+	FAP249	Cre17.g746697.t1.1		7031036,7031428,7031716,7032154,7032257,7032564,7032912,7033282,7033692,7034119,7034660,7035163,7035501,7036030,7036368,7036551,7037056,7037367	7031208,7031495,7031889,7032203,7032408,7032788,7032939,7033372,7033770,7034217,7034758,7035261,7035542,7036128,7036409,7036700,7037121,7038707	Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome [PMID: 15998802].  Possible phospholipase A2 or serine endopeptidase activity
chr17	7043066	7044083	7043165	7043553	+	Cre17.g746747.t1.1	Cre17.g746747.t1.1		7043066,7043448	7043297,7044083	
chr17	7044506	7046626	7045299	7045795	+	Cre17.g746797.t1.1	Cre17.g746797.t1.1		7044506,7045615	7045356,7046626	
chr17	7046796	7051717	7047299	7051327	+	Cre17.g746847.t1.1	Cre17.g746847.t1.1		7046796,7047734,7047994,7050413,7051101,7051327	7047474,7047828,7050221,7050982,7051211,7051717	
chr17	7051720	7056275	7053124	7056165	-	Cre17.g746897.t2.1	Cre17.g746897.t2.1		7056110,7055870,7055479,7055120,7054747,7054538,7054128,7053756,7051720	7056275,7056013,7055529,7055188,7054813,7054555,7054218,7053842,7053211	
chr17	7051090	7056275	7053124	7056165	-	Cre17.g746897.t1.1	Cre17.g746897.t1.1		7056110,7055870,7055479,7055120,7054747,7054538,7054128,7053756,7051090	7056275,7056013,7055529,7055188,7054813,7054555,7054218,7053842,7053211	
chr17	7056406	7066832	7056579	7065482	+	Cre17.g746947.t1.1	Cre17.g746947.t1.1		7056406,7056725,7057076,7057335,7059510,7060579,7061191,7061575,7063432,7063772	7056612,7056805,7057213,7059348,7060280,7060835,7061380,7063040,7063515,7066832	
chr17	7068687	7076475	7069649	7076072	-	ADH1	Cre17.g746997.t1.1		7076383,7076261,7075880,7075359,7075053,7074367,7074004,7073556,7073074,7072724,7072340,7071657,7071292,7071005,7070733,7070354,7070003,7068687	7076475,7076296,7076085,7075592,7075182,7074884,7074093,7073624,7073274,7072894,7072489,7071782,7071502,7071139,7070851,7070548,7070178,7069797	Dual function alcohol dehydrogenase / acetaldehyde dehydrogenase [EC:1.1.1.1 /1.2.1.10], probably mitochondrial [PMID: 14756315].  Consolidates 3 previous v3 models, probably correctly
chr17	7076610	7077535	7077060	7077488	-	Cre17.g747047.t1.1	Cre17.g747047.t1.1		7077416,7076610	7077535,7077318	
chr17	7077720	7079455	7078359	7079425	-	Cre17.g747097.t1.1	Cre17.g747097.t1.1		7079403,7077720	7079455,7079261	
chr17	7079738	7083525	7080723	7083494	-	Cre17.g747147.t1.1	Cre17.g747147.t1.1		7083419,7083259,7082940,7082484,7082154,7081400,7079738	7083525,7083276,7083012,7082629,7082276,7081933,7080801	
chr17	7083626	7088315	7083766	7087443	+	Cre17.g747197.t1.1	Cre17.g747197.t1.1		7083626,7083831,7084003,7084356,7084628,7085239,7085706,7086150,7086675,7087251	7083790,7083839,7084182,7084448,7084788,7085314,7085804,7086237,7086985,7088315	
chr17	7083626	7088315	7083766	7087443	+	Cre17.g747197.t2.1	Cre17.g747197.t2.1		7083626,7083831,7084003,7084356,7084631,7085239,7085706,7086150,7086675,7087251	7083790,7083839,7084182,7084448,7084788,7085314,7085804,7086237,7086985,7088315	
chr17	7089127	7102005	7089684	7101640	-	FAP2	Cre17.g747247.t1.1		7101555,7100831,7100322,7099891,7099274,7098685,7097978,7097450,7096825,7096479,7095918,7095666,7095409,7094964,7094620,7094219,7093633,7092789,7092338,7091927,7091299,7090672,7090269,7089127	7102005,7101349,7100551,7100088,7099507,7098904,7098483,7097704,7097139,7096673,7096253,7095755,7095489,7095097,7094674,7094356,7093995,7093278,7092456,7092094,7091658,7090746,7090451,7089876	Similar to kinesin light chains
chr17	7102138	7104425	7103043	7104106	-	FAP37	Cre17.g747297.t1.1		7103833,7103532,7102138	7104425,7103645,7103226	Peptidyl-tRNA hydrolase family
chr17	7104576	7109467	7104697	7109027	+	Cre17.g747347.t1.1	Cre17.g747347.t1.1		7104576,7105671,7105943,7106195,7106758,7107255,7108097,7108613	7105150,7105727,7106017,7106371,7106961,7107827,7108273,7109467	
chr17	7109480	7119905	7109816	7119755	-	Cre17.g747397.t1.1	Cre17.g747397.t1.1		7119677,7119267,7118489,7118072,7117668,7117251,7116894,7116457,7115995,7115564,7115203,7114762,7114020,7113507,7113043,7112735,7112275,7111990,7111488,7111002,7110615,7109480	7119905,7119374,7118626,7118183,7117797,7117342,7117075,7116685,7116095,7115669,7115353,7114910,7114156,7113629,7113141,7112816,7112419,7112092,7111735,7111212,7110705,7110454	
chr17	7120056	7122657	7120241	7122171	+	Cre17.g747447.t1.1	Cre17.g747447.t1.1		7120056,7120633,7121494,7121853	7120429,7120669,7121706,7122657	
chr17	7122726	7136024	7122816	7135406	+	Cre17.g747497.t1.1	Cre17.g747497.t1.1		7122726,7123079,7123331,7125762,7131936,7133249	7122874,7123173,7125577,7131708,7133005,7136024	
chr17	7136802	7139665	7137737	7139102	-	Cre17.g747547.t1.1	Cre17.g747547.t1.1		7139415,7139033,7138794,7136802	7139665,7139104,7138913,7138655	
chr17	7139716	7142855	7140900	7142626	-	Cre17.g747597.t1.1	Cre17.g747597.t1.1		7139716	7142855	
chr17	7142910	7145375	7143189	7145370	-	Cre17.g747647.t1.1	Cre17.g747647.t1.1		7145286,7144837,7144319,7143978,7143685,7142910	7145375,7145142,7144733,7144180,7143781,7143500	
chr17	7145467	7147018	7145556	7146597	+	Cre17.g747697.t1.1	Cre17.g747697.t1.1		7145467,7146020,7146503	7145754,7146357,7147018	
chr17	7147020	7150325	7147659	7150191	-	Cre17.g747747.t1.1	Cre17.g747747.t1.1		7149726,7149406,7149141,7148712,7148511,7148305,7147983,7147020	7150325,7149462,7149214,7148945,7148598,7148354,7148046,7147791	
chr17	7150446	7154334	7150769	7153331	+	MCP30	Cre17.g747797.t1.1		7150446,7150934,7151172,7151456,7151627,7151918,7152524,7152713,7152947,7153208	7150805,7151101,7151310,7151469,7151800,7152093,7152584,7152757,7153048,7154334	
chr17	7150446	7154334	7150769	7153331	+	MCP30	Cre17.g747797.t2.1		7150446,7151015,7151172,7151456,7151627,7151918,7152524,7152713,7152947,7153208	7150805,7151101,7151310,7151469,7151800,7152093,7152584,7152757,7153048,7154334	
chr17	7154615	7158671	7154710	7158125	+	Cre17.g747847.t1.1	Cre17.g747847.t1.1		7154615,7154912,7155343,7156293,7156672,7157042,7157456	7154806,7155050,7156158,7156464,7156801,7157287,7158671	
chr17	7162165	7169005	7162697	7168928	-	Cre17.g747897.t1.1	Cre17.g747897.t1.1		7168864,7168692,7168535,7168374,7168148,7167921,7167598,7167264,7166984,7166392,7166102,7165550,7165033,7164043,7163798,7163504,7163295,7162165	7169005,7168743,7168587,7168440,7168274,7167986,7167829,7167485,7167126,7166739,7166237,7165754,7165195,7164899,7163903,7163656,7163391,7162978	
chr17	7162165	7169215	7162697	7168718	-	Cre17.g747897.t2.1	Cre17.g747897.t2.1		7168864,7168692,7168535,7168374,7168148,7167921,7167598,7167264,7166984,7166392,7166102,7165550,7165033,7164043,7163798,7163504,7163295,7162165	7169215,7168743,7168587,7168440,7168274,7167986,7167829,7167485,7167126,7166739,7166237,7165754,7165195,7164899,7163903,7163656,7163391,7162978	
chr17	7169056	7170795	7169913	7170571	-	Cre17.g747947.t1.1	Cre17.g747947.t1.1		7170768,7170552,7169056	7170795,7170686,7170200	
chr17	7170896	7180997	7179228	7180882	+	Cre17.g747997.t1.1	Cre17.g747997.t1.1		7170896,7178989	7171525,7180997	
chr17	7181046	7185107	7181189	7184919	+	Cre17.g748047.t1.1	Cre17.g748047.t1.1		7181046,7183277,7184919	7181552,7183507,7185107	
chr2	15906	19537	16074	18896	+	Cre02.g073150.t1.2	Cre02.g073150.t1.2		15906,16351,18730	16142,16479,19537	
chr2	19586	23452	19631	22569	+	CSB10	Cre02.g073176.t1.1		19586,20116,22220,22446	20024,22101,22330,23452	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	28610	34645	30226	34520	-	THD1	Cre02.g073200.t1.2		34226,33994,33629,33332,32934,32702,32053,31591,31340,31000,30740,30460,28610	34645,34083,33734,33441,33158,32806,32166,31771,31478,31198,30814,30588,30352	threonine deaminase; threonine ammonia-lyase; threonine dehydratase (EC:4.3.1.19); organelle (mitochondria) targeting predicted by Target-P; plastid localization expected based on homology
chr2	34756	42067	35011	41639	+	Cre02.g073250.t1.1	Cre02.g073250.t1.1		34756,35236,35439,35566,35905,36248,36638,36829,37237,37500,37705,38015,38644,38975,39315,39646,40097	35075,35348,35492,35674,36083,36293,36670,37049,37332,37578,37923,38544,38824,39189,39458,39942,42067	
chr2	42737	44389	42956	44081	+	Cre02.g073300.t1.1	Cre02.g073300.t1.1		42737,43624,43967	43258,43711,44389	
chr2	44436	47429	45038	46906	+	Cre02.g073350.t1.2	Cre02.g073350.t1.2		44436,44940,46906	44509,46606,47429	
chr2	47476	52997	47583	52056	+	Cre02.g073400.t1.1	Cre02.g073400.t1.1		47476,47848,48098,48491,48776,49264,49513,50078,50532,50925,51218,51668	47661,47925,48190,48607,48865,49389,49844,50374,50690,51090,51327,52997	
chr2	53056	58527	53113	58494	+	Cre02.g073450.t1.1	Cre02.g073450.t1.1		53056,53424,54395,55196,56276,57128,57560	53259,54236,55078,56096,56868,57376,58527	
chr2	58530	62865	58954	62432	-	FAP241	Cre02.g073500.t1.1		62282,62122,61885,61704,61515,61287,61036,60810,60628,60324,59999,59703,59436,58530	62865,62193,61977,61748,61604,61370,61078,60898,60657,60461,60141,59841,59546,59236	Flagellar Associated Protein, found in the flagellar proteome
chr2	62950	69095	63374	68966	-	Cre02.g073550.t1.2	Cre02.g073550.t1.2		68895,68728,68028,67472,67163,66744,66481,66235,63678,62950	69095,68779,68268,67558,67263,66833,66615,66312,63782,63467	Nucleosome/chromatin assembly complex protein (NAP).  ChromoDB NFA344
chr2	70052	72825	70990	72589	-	Cre02.g073600.t1.1	Cre02.g073600.t1.1		72502,71276,70052	72825,71353,71044	
chr2	72872	76085	73243	75953	-	PRP19	Cre02.g073650.t1.2		75221,74681,74290,73969,73620,72872	76085,74962,74387,74124,73722,73384	Homologue of S. cerevisiae Prp19, which is required prior to Catalytic Step 1 of nuclear pre-mRNA splicing. Contains WD-40 repeats. Transducin family protein / WD-40 repeat family protein
chr2	72872	76205	73243	75953	-	PRP19	Cre02.g073650.t2.1		76184,75221,74681,74290,73969,73620,72872	76205,76040,74962,74387,74124,73722,73384	Homologue of S. cerevisiae Prp19, which is required prior to Catalytic Step 1 of nuclear pre-mRNA splicing. Contains WD-40 repeats. Transducin family protein / WD-40 repeat family protein
chr2	76253	79727	76907	79701	-	UROD3	Cre02.g073700.t2.1		79547,79360,78547,78257,77814,77574,77228,76253	79727,79423,78768,78428,78063,77677,77350,77015	
chr2	76140	79727	76907	79701	-	UROD3	Cre02.g073700.t1.2		79547,79360,78547,78257,77814,77574,77228,76140	79727,79423,78768,78428,78063,77677,77350,77015	
chr2	79846	84993	80000	84602	+	KLP1	Cre02.g073750.t1.2		79846,80348,80602,80889,81193,81429,82144,82574,82870,83256,84035,84344	80068,80441,80715,81020,81300,81575,82420,82748,83104,83804,84208,84993	Kinesin-like protein 1, kinesin-9 (Kif9) family; kinesin associated with one of the central pair microtubules of the flagellar axoneme
chr2	85096	86940	85662	86113	+	Cre02.g073800.t1.2	Cre02.g073800.t1.2		85096,85874,86075	85734,85934,86940	
chr2	87150	89065	87334	88958	-	Cre02.g073826.t1.1	Cre02.g073826.t1.1		88777,88380,88154,87150	89065,88660,88297,87625	
chr2	89164	90660	89193	90422	+	CGL54	Cre02.g073850.t1.2		89164,89606,90006,90264	89476,89688,90111,90660	
chr2	91476	95449	91607	95079	+	Cre02.g073900.t1.1	Cre02.g073900.t1.1		91476,91967,92330,92682,93030,93483,93767,94011,94303,94556,94885	91841,92166,92438,92763,93249,93633,93808,94185,94456,94689,95449	
chr2	95496	100167	95537	99784	+	Cre02.g073950.t1.2	Cre02.g073950.t1.2		95496,95885,96244,96691,96924,97356,97629,98495,98716,99008,99261,99590	95696,96084,96385,96772,97216,97468,97779,98536,98890,99161,99394,100167	
chr2	100200	111325	100318	111115	-	POC18	Cre02.g074000.t1.1		110723,110516,110273,109555,108792,108436,108036,107800,107508,107248,107000,106699,106413,106155,105892,105581,105380,105147,104845,104579,103454,103161,101755,100820,100200	111325,110600,110368,110127,109384,108608,108256,107931,107660,107368,107118,106866,106538,106305,106037,105790,105471,105273,105024,104704,104439,103328,103020,101614,100664	Found in basal body proteome [PMID: 15964273]
chr2	100200	111325	100318	111115	-	POC18	Cre02.g074000.t2.1		110723,110516,110273,109555,108792,108436,108036,107800,107508,107248,107000,106699,106413,106155,105892,105581,105380,105147,104845,104579,103454,103161,101755,100820,100200	111325,110600,110368,110127,109384,108608,108256,107931,107660,107368,107118,106866,106538,106305,106037,105790,105471,105273,105024,104704,104439,103328,103020,101611,100664	Found in basal body proteome [PMID: 15964273]
chr2	111876	114197	112015	113878	+	Cre02.g074050.t1.1	Cre02.g074050.t1.1		111876,112901,113335,113629	112737,113116,113470,114197	
chr2	114480	116175	114847	116143	-	Cre02.g074100.t1.2	Cre02.g074100.t1.2		116032,115861,115412,115140,114480	116175,115943,115531,115171,114930	
chr2	116286	126657	116436	124656	+	COP5	Cre02.g074150.t1.1		116286,116739,116917,117562,117785,118261,118633,119110,119539,119881,120396,121280,121639,122106,123258,124459	116579,116829,117210,117643,117854,118327,118829,119350,119697,120183,120849,121425,121815,123039,124208,126657	Histidine kinase rhodopsin 1; is bimodally switched by ultraviolet and blue light; contains bacteriorhodopsin, Histine kinase, response regulator receiver and Guanylate/adenylate cyclase catalytic domains
chr2	116286	126657	116436	124656	+	COP5	Cre02.g074150.t2.1		116286,116739,116917,117562,117785,118261,118633,119110,119539,119881,120396,121280,121639,122106,123258,124459	116579,116829,117210,117643,117854,118327,118829,119350,119697,120183,120657,121425,121815,123039,124208,126657	Histidine kinase rhodopsin 1; is bimodally switched by ultraviolet and blue light; contains bacteriorhodopsin, Histine kinase, response regulator receiver and Guanylate/adenylate cyclase catalytic domains
chr2	126911	130025	128095	129881	-	Cre02.g074200.t1.2	Cre02.g074200.t1.2		129751,129300,128835,126911	130025,129419,129067,128689	
chr2	130574	131435	130790	131320	-	Cre02.g074217.t1.2	Cre02.g074217.t1.2		130990,130574	131435,130853	
chr2	133846	140989	133965	140479	+	Cre02.g074250.t1.1	Cre02.g074250.t1.1		133846,134378,135068,135322,136016,136443,138062	134127,134854,135154,135741,136179,137815,140989	
chr2	141166	155277	141334	154525	+	Cre02.g074300.t1.1	Cre02.g074300.t1.1		141166,141627,142432,143504,143859,144979,145339,149323,151568,151938,152267,152675,153468,154285	141422,142203,143326,143689,144569,145204,149152,151405,151675,152093,152510,153159,154085,155277	
chr2	155280	163625	156098	163314	-	Cre02.g074350.t1.1	Cre02.g074350.t1.1		163232,162812,162524,162240,162004,159049,157848,157295,156779,155280	163625,162968,162606,162349,162039,161772,158908,157377,157020,156485	
chr2	163680	173615	164317	173573	-	Cre02.g074370.t1.2	Cre02.g074370.t1.2		172515,172040,171727,171466,170992,170666,170273,169976,169711,168816,168625,168219,167993,167678,167074,163680	173615,172337,171891,171504,171114,170755,170342,170097,169770,168851,168686,168417,168046,167763,167471,166860	
chr2	175641	178155	176137	178090	-	Cre02.g074400.t1.1	Cre02.g074400.t1.1		177152,176697,175641	178155,177015,176452	
chr2	178210	182235	178243	181987	-	Cre02.g074437.t1.1	Cre02.g074437.t1.1		181510,180698,178210	182235,181251,179417	
chr2	185070	186122	185222	185400	+	Cre02.g074474.t1.1	Cre02.g074474.t1.1		185070	186122	
chr2	186244	190720	188618	190602	-	Cre02.g074511.t1.1	Cre02.g074511.t1.1		190544,190354,190130,189787,189402,189064,186244	190720,190449,190183,189889,189546,189172,188866	
chr2	199610	201086	199736	200334	+	Cre02.g074550.t1.2	Cre02.g074550.t1.2		199610,200254	199902,201086	
chr2	203274	207439	203759	207136	-	CGL60	Cre02.g074600.t1.1		207019,206355,206013,205659,205344,204573,204092,203274	207439,206445,206074,205782,205411,205094,204340,203900	
chr2	209965	211149	210626	211117	-	CSB11	Cre02.g074626.t1.1		211093,210865,209965	211149,210975,210749	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	211724	216929	211968	216700	-	Cre02.g074650.t1.2	Cre02.g074650.t1.2		216630,216248,215875,215678,215431,215042,214783,214514,213942,213714,213355,212533,212305,211724	216929,216351,215970,215735,215595,215259,214890,214627,214020,213790,213522,213120,212385,212109	
chr2	217025	220281	217117	219032	+	Cre02.g074700.t1.2	Cre02.g074700.t1.2		217025,217831,218089,218377,218587,218975	217295,217949,218139,218416,218669,220281	
chr2	220460	223204	220762	221660	+	Cre02.g074720.t1.1	Cre02.g074720.t1.1		220460,220979,221235	220886,221071,223204	
chr2	223390	225089	223912	224417	-	Cre02.g074737.t1.2	Cre02.g074737.t1.2		223390	225089	
chr2	225190	234087	225290	232802	+	CYG8	Cre02.g074758.t1.1		225190,225510,225597,225969,226534,227038,228902,229471,230858,231289,231603,231880,232538	225348,225544,225755,226234,226948,228733,229305,230712,230920,231471,231654,232424,234087	C terminal domain similar to guanylate cyclase 1 from Homo sapiens; closely related to nearby CYG9
chr2	225190	234251	225290	232802	+	CYG8	Cre02.g074758.t2.1		225190,225510,225597,225969,226534,227038,228902,229471,230858,231289,231603,231880,232538	225348,225544,225755,226234,226948,228733,229305,230712,230920,231471,231654,232424,234251	C terminal domain similar to guanylate cyclase 1 from Homo sapiens; closely related to nearby CYG9
chr2	235350	250081	236125	247666	+	CYG9	Cre02.g074800.t1.1		235350,236269,236578,237102,237419,237729,237966,238365,238576,239124,241081,241717,242272,242773,244567,245937,246267,246574,247372	236177,236361,236918,237152,237441,237813,238184,238393,238924,240855,241536,241800,242570,244406,245608,246119,246318,247118,250081	C terminal domain similar to guanylate cyclase 1 from Homo sapiens; closely related to nearby CYG8
chr2	235350	250372	236125	247666	+	CYG9	Cre02.g074800.t2.1		235350,236269,236578,237102,237419,237729,237966,238365,238576,239124,241081,241717,242272,242773,244567,245937,246267,246574,247372	236177,236361,236918,237152,237441,237813,238184,238393,238924,240855,241536,241800,242570,244406,245608,246119,246318,247118,250372	C terminal domain similar to guanylate cyclase 1 from Homo sapiens; closely related to nearby CYG8
chr2	250404	256329	252962	256190	-	Cre02.g074850.t1.1	Cre02.g074850.t1.1		255539,255246,255008,254522,254202,253687,250404	256329,255325,255080,254704,254307,253778,253448	
chr2	256394	265489	257805	265337	-	Cre02.g074900.t1.1	Cre02.g074900.t1.1		265283,265008,264545,263725,263374,263065,262537,261955,261568,261297,261014,260652,258269,256394	265489,265127,264738,264313,263484,263160,262750,262163,261666,261401,261115,260765,260472,257983	
chr2	265590	274761	265825	273587	+	Cre02.g074950.t1.1	Cre02.g074950.t1.1		265590,266342,266634,267156,267458,267748,267962,268139,268464,268665,269062,269188,269765,269944,270283,270988,271166,271514,271786,272159,272482,272774,272963,273214,273534	265909,266455,266885,267272,267533,267832,268010,268191,268470,268820,269105,269222,269770,270055,270433,271023,271250,271586,272011,272207,272503,272840,273013,273304,274761	
chr2	275580	276811	275682	275848	+	Cre02.g074976.t1.1	Cre02.g074976.t1.1		275580	276811	
chr2	276150	279080	276920	278791	+	Cre02.g075000.t1.1	Cre02.g075000.t1.1		276150,277077,277405,277571,277794,277987,278250,278443,278712	276958,277089,277435,277632,277848,278058,278261,278521,279080	
chr2	276860	279080	277025	278712	+	Cre02.g075000.t3.1	Cre02.g075000.t3.1		276860,277077,277405,277571,277794,277987,278250,278712	277036,277089,277435,277632,277848,278075,278521,279080	
chr2	276150	279080	276920	278763	+	Cre02.g075000.t2.1	Cre02.g075000.t2.1		276150,277077,277405,277571,277794,277987,278712	276958,277089,277435,277632,277848,278075,279080	
chr2	276860	279080	277162	278763	+	Cre02.g075000.t4.1	Cre02.g075000.t4.1		276860,277405,277571,277794,277987,278712	277213,277435,277632,277848,278075,279080	
chr2	276860	279080	277025	278763	+	Cre02.g075000.t5.1	Cre02.g075000.t5.1		276860,277077,277405,277571,277794,277987,278712	277036,277089,277435,277632,277848,278075,279080	
chr2	279932	285449	280560	285273	-	PTA1	Cre02.g075050.t1.2		285145,285028,284508,284315,284082,283745,283353,283024,282476,282117,281495,281250,280957,279932	285449,285073,284597,284343,284118,283817,283453,283159,282780,282293,281748,281281,281064,280727	gi 21218039 gb AB074874.1: Putative phosphate transporter homolog type A-1, similar to yeast Pho84 proton/phosphate symporter.
chr2	285760	288791	287014	288547	+	TPR3	Cre02.g075100.t1.2		285760,286707,287611,288121,288418	286485,287438,287858,288168,288791	TPR protein with good similarity to human TTC1 (TPR1; Q99614)) and Arabidopsis Q9M0B2. May be involved in protein folding, PMID: 8836031.
chr2	285760	289061	287014	288547	+	TPR3	Cre02.g075100.t2.1		285760,286707,287611,288121,288418	286485,287438,287858,288168,289061	TPR protein with good similarity to human TTC1 (TPR1; Q99614)) and Arabidopsis Q9M0B2. May be involved in protein folding, PMID: 8836031.
chr2	288794	301009	290058	300738	-	RPB2	Cre02.g075150.t1.2		300382,299699,299219,298532,297967,297594,297269,296740,296414,295887,295392,294943,294466,294113,293675,293317,293003,292511,292064,290394,288794	301009,299807,299311,298656,298126,297755,297384,296893,296537,296093,295588,295136,294727,294316,293798,293456,293074,292732,292302,291876,290166	Contains in its penultimate exon an intein spliced out post-translationally [see PMID: 97248673]; highly similar to Volvox homologue except for the intein and the last 6 residues
chr2	289063	301009	290058	300738	-	RPB2	Cre02.g075150.t2.1		300382,299699,299219,298532,297967,297594,297269,296740,296414,295887,295392,294943,294466,294113,293675,293317,293003,292511,292064,290394,289063	301009,299807,299311,298656,298126,297755,297384,296893,296537,296093,295588,295136,294727,294316,293798,293456,293074,292732,292302,291876,290166	Contains in its penultimate exon an intein spliced out post-translationally [see PMID: 97248673]; highly similar to Volvox homologue except for the intein and the last 6 residues
chr2	301120	306751	301251	306417	+	Cre02.g075200.t1.1	Cre02.g075200.t1.1		301120,302870,303504,305179,305457,305898	302622,303277,304903,305275,305588,306751	
chr2	306767	308523	307338	308325	-	Cre02.g075250.t1.1	Cre02.g075250.t1.1		308085,307766,306767	308523,307800,307531	
chr2	306767	308523	307338	308112	-	Cre02.g075250.t2.1	Cre02.g075250.t2.1		308085,307766,306767	308523,307800,307531	
chr2	308630	310935	309124	310218	+	Cre02.g075301.t1.1	Cre02.g075301.t1.1		308630,309373,310120	309288,309710,310935	
chr2	311621	315730	311992	315511	-	CNK1	Cre02.g075350.t3.1		315460,315165,314660,314507,314122,313755,313402,313085,312610,312303,311621	315730,315338,314817,314545,314257,313834,313542,313185,312909,312377,312183	NimA related kinase homolog 1 [gi:34334391, PMID: 15068267]
chr2	311027	315979	311992	315511	-	CNK1	Cre02.g075350.t1.2		315460,315165,314660,314507,314122,313755,313402,313085,312610,312303,311027	315979,315338,314817,314545,314257,313834,313542,313185,312909,312377,312183	NimA related kinase homolog 1 [gi:34334391, PMID: 15068267]
chr2	311027	315979	311992	315511	-	CNK1	Cre02.g075350.t2.1		315460,315165,314660,314507,314122,313755,313402,313085,312640,312303,311027	315979,315338,314817,314545,314257,313834,313542,313185,312909,312377,312183	NimA related kinase homolog 1 [gi:34334391, PMID: 15068267]
chr2	316276	320189	317746	320096	-	Cre02.g075400.t1.1	Cre02.g075400.t1.1		320029,319910,319460,319211,318980,318773,318480,318353,318035,316276	320189,319938,319495,319250,319059,318811,318584,318360,318158,317881	
chr2	316276	320189	317746	320096	-	Cre02.g075400.t2.1	Cre02.g075400.t2.1		320029,319910,319460,319211,318980,318773,318500,318353,318035,316276	320189,319938,319495,319250,319059,318811,318584,318377,318158,317881	
chr2	329440	333957	329819	333420	+	Cre02.g075500.t1.1	Cre02.g075500.t1.1		329440,330199,330976,331369,332067,333420	330041,330840,331233,331718,332109,333957	
chr2	335524	338509	336382	338313	-	Cre02.g075550.t1.2	Cre02.g075550.t1.2		338227,338043,337793,337534,336733,335524	338509,338107,337845,337626,336810,336427	
chr2	338610	353841	338644	352959	+	Cre02.g075600.t1.1	Cre02.g075600.t1.1		338610,341138,341598,342348,342722,343352,343810,344483,345667,346145,346607,346914,347465,347773,348262,348824,349226,349546,349900,350255,350602,350987,351405,351872,352298,352793	340815,341279,342036,342484,342934,343441,343923,345250,345909,346174,346732,347049,347547,347916,348539,348947,349378,349638,350007,350323,350742,351082,351512,351963,352423,353841	
chr2	353849	357984	354548	357776	-	Cre02.g075650.t1.2	Cre02.g075650.t1.2		357665,357467,357029,356437,355657,355295,353849	357984,357543,357122,356631,355865,355397,355013	
chr2	358034	358959	358620	358879	-	Cre02.g075676.t1.1	Cre02.g075676.t1.1		358034	358959	
chr2	359070	362381	359231	362005	+	RPL19	Cre02.g075700.t1.2		359070,359594,360287,361452,361951	359343,359716,360429,361622,362381	Cytosolic 60S large ribosomal subunit protein L19
chr2	362750	371073	362823	369113	+	Cre02.g075750.t1.1	Cre02.g075750.t1.1		362750,363010,363648,364108,364824,367786,368972	362874,363395,363789,364673,367558,368654,371073	
chr2	371300	374011	371581	372838	+	Cre02.g075800.t1.2	Cre02.g075800.t1.2		371300,371740,372025,372231,372577,372718	371641,371928,372057,372293,372618,374011	
chr2	374014	379509	374811	379148	-	Cre02.g075850.t1.1	Cre02.g075850.t1.1		379126,378919,378475,377916,377466,376941,376631,376365,376030,375518,374014	379509,378977,378567,378063,377540,377007,376664,376442,376104,375630,375028	Serine/Threonine Protein Kinase Homolog 12
chr2	374014	379509	374811	378922	-	Cre02.g075850.t2.1	Cre02.g075850.t2.1		378919,378475,377916,377466,376941,376631,376365,376030,375518,374014	379509,378567,378063,377540,377007,376664,376442,376104,375630,375028	Serine/Threonine Protein Kinase Homolog 12
chr2	379966	385110	381062	385012	-	Cre02.g075900.t1.1	Cre02.g075900.t1.1		384871,384620,384411,384134,383889,383417,383057,382427,381926,381527,379966	385110,384710,384469,384213,383935,383481,383174,382486,382173,381718,381188	Serine/Threonine Protein Kinase Homolog 9
chr2	386749	396549	388392	396050	-	Cre02.g075950.t1.1	Cre02.g075950.t1.1		395609,392828,392269,386749	396549,395266,392661,392151	
chr2	396650	398371	397999	398291	+	Cre02.g075994.t1.2	Cre02.g075994.t1.2		396650,397913	397442,398371	
chr2	398374	404809	399218	404604	-	LAT3	Cre02.g076000.t1.2		404502,403704,402691,402161,401881,401209,400916,400556,400021,399701,398374	404809,404111,402798,402339,401947,401284,400970,400648,400185,399827,399362	Serine/Threonine Protein Kinase Homolog 1, putative; null mutants sentitive to the actin-depolymerizing drug Latrunculin B; null-allele mutant was isolated (PMID 29743196)
chr2	404864	409609	405528	409520	-	Cre02.g076050.t1.2	Cre02.g076050.t1.2		409471,409015,408641,407935,407510,407106,406826,406469,405963,404864	409609,409199,408707,408359,407689,407165,406900,406623,406276,405701	
chr2	409771	423509	410170	423375	-	Cre02.g076100.t1.1	Cre02.g076100.t1.1		423245,422912,422737,422292,421916,420415,419915,419513,417826,416667,416116,415676,415253,414991,414587,414222,413881,413487,412978,412547,412270,411387,411008,409771	423509,423012,422796,422441,422016,421691,420075,419617,419343,417646,416452,415813,415336,415029,414801,414356,414115,413681,413198,412757,412377,411751,411125,410653	
chr2	423640	428901	423821	427877	+	Cre02.g076150.t1.2	Cre02.g076150.t1.2		423640,424139,424498,425188,425586,425956,426314,427360,427673	423832,424321,424942,425359,425716,426018,427131,427444,428901	
chr2	428934	440419	429316	439818	-	Cre02.g076200.t1.1	Cre02.g076200.t1.1		440232,439624,439027,438262,437825,437498,436909,436522,436063,435650,434920,433634,432866,432212,431837,431350,430883,430576,430241,429861,428934	440419,439851,439525,438820,438043,437592,437192,436642,436193,435763,435061,434486,433308,432482,431931,431539,431117,430750,430378,429998,429502	
chr2	440815	445935	441428	445919	-	EFG1	Cre02.g076250.t1.1		445781,445599,445465,444793,444519,444254,443961,443385,442971,441940,440815	445935,445692,445535,445104,444636,444375,444035,443555,443207,442770,441590	Similar to chloroplast elongation factor G, (fusA), GTP binding; likely locus for previously described C. reinhardtii fsr1 (fus-1) mutant resistant to fusidic acid
chr2	447339	449531	447515	449405	+	UROD2	Cre02.g076300.t1.1		447339,447812,448431,448747,449071,449378	447721,448093,448581,448880,449305,449531	
chr2	449534	453675	450694	453571	-	ATPVB	Cre02.g076350.t1.2		453483,453359,453126,452966,452676,452317,451737,451298,450999,449534	453675,453414,453284,453039,452836,452498,451971,451562,451155,450832	Vacuolar ATP synthase subunit B, V-ATPase B, ATP synthase V-type alpha subunit
chr2	453724	455669	454120	455596	-	VPS25	Cre02.g076400.t1.2		455546,455385,455201,455072,454868,454637,454303,453724	455669,455466,455258,455125,454923,454745,454372,454169	Expressed Protein. Similar to VPS25-like proteins, components of the ESCRT-II complex involved in protein sorting at the MVB.
chr2	456270	457432	456424	456942	+	Cre02.g076433.t1.1	Cre02.g076433.t1.1		456270,456651	456466,457432	
chr2	458590	461339	458715	460212	+	Cre02.g076466.t1.1	Cre02.g076466.t1.1		458590,459310,459635,459974,460188	458933,459395,459685,460032,461339	
chr2	461354	465809	462801	465664	-	Cre02.g076500.t1.2	Cre02.g076500.t1.2		465268,464889,464387,463926,463589,463215,461354	465809,465065,464558,464066,463734,463382,463005	
chr2	465864	467599	465959	467433	-	Cre02.g076550.t1.2	Cre02.g076550.t1.2		465864	467599	
chr2	467760	470227	467927	469889	+	Cre02.g076600.t1.2	Cre02.g076600.t1.2		467760,468449,468748,469240,469582,469817	468257,468541,468879,469335,469680,470227	
chr2	470244	475079	470525	475046	-	Cre02.g076625.t1.1	Cre02.g076625.t1.1		475039,474621,474350,474068,473847,473158,472184,471277,471066,470244	475079,474898,474537,474142,473919,473746,472733,471370,471188,470900	
chr2	475728	477591	475952	476794	+	Cre02.g076650.t1.2	Cre02.g076650.t1.2		475728,476168,476662	476003,476404,477591	
chr2	477920	478719	478082	478405	+	CSB12	Cre02.g076663.t1.2		477920,478056,478282	477937,478166,478719	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	479725	483940	480054	483129	+	Cre02.g076700.t1.1	Cre02.g076700.t1.1		479725,480309,480607,482041,482395,482795	480112,480411,481874,482201,482639,483940	
chr2	484037	486419	484474	486256	-	NUOAF1	Cre02.g076750.t1.1		486183,485963,485818,485510,485062,484037	486419,486096,485904,485652,485182,484750	similar to Complex I intermediate-associated CIA30 protein [PMID: 15450959; PMID: 15710684]; mitochondrial
chr2	486468	490589	486931	490534	-	ERG4	Cre02.g076800.t1.2		490227,489694,489343,488879,488461,487813,486468	490589,489892,489446,488996,488593,488036,487124	Delta14-sterol reductase, membrane protein involved in ergosterol biosynthesis and related to the ERG4/ERG24 protein family.  Has homology to the lamin B receptor
chr2	490644	493899	490942	493611	-	Cre02.g076850.t1.2	Cre02.g076850.t1.2		493519,493196,493027,492793,492511,492325,491822,491407,491171,490644	493899,493258,493092,492852,492643,492384,492191,491641,491219,491080	
chr2	494035	500355	494239	499313	+	FAP19	Cre02.g076900.t1.1		494035,494489,494654,494857,495093,495385,496189,496670,497027,497429,497687,497974,498743	494352,494555,494770,494978,495204,495891,496419,496783,497223,497585,497829,498607,500355	Similar to cGMP-dependent protein kinase; involved in signal transduction initiated by flagellar agglutination during mating [PMID: 16678098]; found in the flagellar proteome [PMID: 15998802]; ts-lethal mutant has fragile cell membrane when poked with a needle at restrictive temperature (PMID 29743196)
chr2	502340	509412	502716	507456	+	SUB4	Cre02.g076950.t1.1		502340,503324,503660,503942,505998	503139,503479,503803,505828,509412	
chr2	509620	514238	509968	513280	+	Cre02.g076987.t1.1	Cre02.g076987.t1.1		509620,510167,510356,510575,511049,511345,511499,511643,511798,512029,512292,512428,512619,512807,512979,513178	510090,510200,510485,510624,511162,511392,511523,511736,511846,512148,512339,512520,512687,512833,513044,514238	
chr2	514310	519151	514408	519126	+	Cre02.g077024.t1.1	Cre02.g077024.t1.1		514310,514929,515291,515485,515854,517390,517678	514687,515113,515367,515720,517269,517564,519151	
chr2	519300	521861	519751	521375	+	Cre02.g077061.t1.1	Cre02.g077061.t1.1		519300,519591,519748,520257,520553,520767,521007	519515,519625,520076,520451,520595,520855,521861	
chr2	521923	527130	522029	526303	+	GSH1	Cre02.g077100.t1.2		521923,522398,522754,522996,523488,523833,524391,524880,525103,525506,525932,526225	522226,522656,522846,523079,523609,523928,524509,524935,525219,525625,526030,527130	Gamma-glutamylcysteine synthetase, chloroplast precursor (Glutamate-cysteine ligase) (Gamma-ECS) (GCS) [EC:6.3.2.2]
chr2	527180	531601	527265	531179	+	CPLD14	Cre02.g077150.t1.1		527180,527740,528053,528513,528853,529531,529843,530109,530528,531033	527600,527775,528190,528642,529010,529639,529910,530238,530708,531601	
chr2	531604	533339	531909	533135	-	Cre02.g077200.t1.2	Cre02.g077200.t1.2		533243,533015,532640,531604	533339,533172,532851,532399	
chr2	533440	537142	533556	536879	+	Cre02.g077250.t1.1	Cre02.g077250.t1.1		533440,534102,534391,534755,535490,535785,536016	534001,534178,534632,534968,535560,535846,537142	
chr2	537494	539549	538472	539421	-	NOP1	Cre02.g077300.t1.2		537494	539549	Homologue of Fibrillarin; required for pre-ribosomal RNA processing. Likely carries the methyltransferase activity that modifies the C/D snoRNA-guided 2'OH methylation of pre-rRNA; Gene has no introns
chr2	540032	545229	540523	545049	-	HDH1	Cre02.g077350.t1.2		544938,544672,544279,543820,543270,542781,542518,542081,541447,540935,540032	545229,544779,544412,543924,543327,542882,542577,542215,541681,541077,540637	histidinol dehydrogenase (EC 1.1.1.23); Target-P predicted organelle targeting; histidine biosynthesis pathway
chr2	545277	548719	545834	548432	-	Cre02.g077401.t1.1	Cre02.g077401.t1.1		548098,547155,546815,546610,546272,545977,545277	548719,547996,547024,546675,546439,546105,545870	
chr2	548773	552939	549441	552600	-	Cre02.g077451.t1.1	Cre02.g077451.t1.1		552095,551957,551687,551374,551003,550616,550361,550086,549786,548773	552939,552012,551827,551508,551131,550687,550411,550195,549924,549666	
chr2	555220	557738	555534	556880	+	TRS23	Cre02.g077500.t1.2		555220,555743,556073,556395,556598,556808	555591,555801,556172,556465,556655,557738	Expressed Protein. Conserved protein similar to TRS23, a component of the TRAPP complex, involved in ER to Golgi trafficking.
chr2	558207	562518	558927	561786	+	PHC62	Cre02.g077550.t1.2		558207,558913,559142,559558,559801	558769,559019,559422,559677,562518	
chr2	558207	562518	558927	561786	+	PHC62	Cre02.g077550.t2.1		558207,558913,559142,559558,559801	558550,559019,559422,559677,562518	
chr2	563681	580126	563949	580008	-	FAP51	Cre02.g077600.t1.2		579939,579403,578961,578657,578297,577928,577485,576843,576335,575954,575242,574906,574475,574207,573699,573367,572902,572522,572191,571928,571496,571126,570714,570454,570067,569664,569399,568925,568572,567994,567590,567212,566884,566520,566239,565860,565554,565002,564666,564283,563681	580126,579526,579088,578692,578417,577959,577607,577019,576516,576143,575679,574992,574602,574288,573863,573459,573048,572631,572332,572029,571567,571338,570787,570571,570222,569845,569531,569013,568665,568386,567694,567370,567011,566679,566351,566056,565702,565136,564819,564465,564086	Flagellar Associated Coiled-Coil Protein, found in the flagellar proteome [PMID: 15998802]; null-allele mutant was isolated (PMID 29743196)
chr2	580227	582355	580626	581941	+	Cre02.g077650.t1.2	Cre02.g077650.t1.2		580227,580622,580880,581224,581517,581755	580343,580696,580945,581369,581579,582355	
chr2	582477	591533	582529	591135	+	Cre02.g077700.t1.1	Cre02.g077700.t1.1		582477,583279,583812,584114,584455,584969,585474,585968,588205,588504,589034,590143,590628	582940,583377,583892,584251,584580,585168,585729,588022,588394,588805,589792,590271,591533	
chr2	591647	598148	592349	596697	+	FAP211	Cre02.g077750.t1.2		591647,592862,593266,593795,594193,594706,595325,595629,596093,596366,596631	592737,593097,593649,593908,594423,595091,595391,595871,596206,596458,598148	Flagellar Associated Protein, found in the flagellar proteome; belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains
chr2	599756	604266	600792	603654	-	FAP310	Cre02.g077800.t1.2		603266,602922,601453,599756	604266,603157,602754,601308	Predicted protein of CSE family: belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome; null-allele mutant was isolated (PMID 29743196)
chr2	608124	612186	608892	611704	-	FAP212	Cre02.g077850.t1.2		611358,610988,609565,608124	612186,611223,610821,609405	Flagellar Associated Protein, found in the flagellar proteome; belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; null-allele passenger mutation was isolated (PMID 29743196)
chr2	614667	621888	615071	621608	+	Cre02.g077900.t1.1	Cre02.g077900.t1.1		614667,615060,615701,616053,617274,617922,618262,619224,620061,620500,620856,621197	614884,615361,615779,616168,617728,618086,619100,619901,620184,620738,620912,621888	
chr2	621947	624598	622553	624455	+	Cre02.g077925.t1.1	Cre02.g077925.t1.1		621947,622320,622903,623491,623871,624343	622211,622658,623149,623615,623977,624598	
chr2	624667	638538	624790	638210	+	Cre02.g077951.t1.1	Cre02.g077951.t1.1		624667,625907,626203,626969,627628,627892,628755,629318,630635,631091,631469,632019,632407,632812,633432,633776,634854,635261,635627,635999,636341,636715,637224,637475	625396,625972,626454,627299,627713,628563,628894,630302,630803,631191,631669,632165,632530,632921,633559,634556,634977,635328,635719,636139,636418,636881,637326,638538	
chr2	638541	644856	638688	644548	-	Cre02.g077976.t1.1	Cre02.g077976.t1.1		644482,643936,643709,643291,642801,642400,641936,638541	644856,644051,643775,643386,642938,642528,642247,641775	
chr2	645726	653956	646486	653192	-	Cre02.g078000.t1.1	Cre02.g078000.t1.1		653117,652780,652415,652067,651723,651283,650888,650409,649979,649497,649020,648748,648432,648129,647815,647448,647082,646792,645726	653956,652938,652521,652136,651796,651345,650921,650501,650083,649622,649128,648796,648484,648233,647866,647535,647202,646859,646576	
chr2	654627	660898	654844	659969	+	CAM5	Cre02.g078050.t1.2		654627,655365,655772,656099,656435,656764,657067,657395	654904,655478,655840,656194,656572,656895,657264,660898	
chr2	661501	674836	662525	674692	-	EIF5B1	Cre02.g078100.t1.1		674215,673643,673290,672801,672458,672205,671957,671547,671222,670555,670209,669915,669509,668940,668379,667924,667526,667051,666599,666201,665770,665354,664902,664620,664037,663630,663216,662884,661501	674836,673795,673475,672948,672601,672330,672070,671657,671374,670902,670359,670020,669623,669232,668671,668134,667666,667229,666719,666320,665956,665499,665036,664712,664228,663758,663395,662994,662642	Putative eukaryotic initiation factor, similar to human EIF5B
chr2	675447	691098	675577	690572	+	Cre02.g078150.t1.1	Cre02.g078150.t1.1		675447,675806,676168,676483,676993,677346,679065,679336,679645,680422,680972,681310,681794,682152,682436,683246,683699,684310,684713,685162,685532,685852,686277,686514,686892,687293,687712	675713,675936,676257,676854,677133,678857,679166,679476,680045,680649,681077,681384,681897,682216,683063,683510,684052,684386,684877,685330,685572,686000,686368,686663,686975,687426,691098	
chr2	691764	696056	692210	695202	-	Cre02.g078200.t1.1	Cre02.g078200.t1.1		695691,695539,695173,695053,694871,694723,694392,694019,693805,693581,693143,691764	696056,695578,695332,695080,694927,694796,694566,694270,693915,693655,693472,692342	
chr2	691764	696056	693115	695202	-	Cre02.g078200.t2.1	Cre02.g078200.t2.1		695691,695539,695173,695053,694871,694723,694392,694019,693805,693581,691764	696056,695578,695332,695080,694927,694796,694566,694270,693915,693655,693472	
chr2	691764	695816	693115	695202	-	Cre02.g078200.t3.1	Cre02.g078200.t3.1		695691,695539,695173,695053,694871,694723,694392,694019,693805,693581,691764	695816,695578,695332,695080,694927,694796,694566,694270,693915,693655,693472	
chr2	696111	698666	697107	698254	-	Cre02.g078226.t2.1	Cre02.g078226.t2.1		698058,697696,697320,696111	698666,697923,697343,697181	
chr2	695871	698666	697107	698254	-	Cre02.g078226.t1.1	Cre02.g078226.t1.1		698058,697696,697320,695871	698666,697923,697343,697181	
chr2	702787	703528	702812	703041	+	Cre02.g078251.t1.1	Cre02.g078251.t1.1		702787	703528	
chr2	703609	705905	704618	705028	+	GPX1	Cre02.g078300.t1.1		703609,703848,704031,704199,704535,704906	703755,703885,704088,704267,704700,705905	Gene model is truncated at N-terminus due to UGA Selenocystein codon; add sequence MSLLGNLFGGGSKPTSSTSNFHQLSALDIDKKNVDFKSLNNRVVLVVNVASKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALL with a Selenocysteine in position 53; most similar to plant homologues, that have a Cys at the corresponding position; contains a SECIS element in 3'-UTR
chr2	706087	709968	706220	708996	+	Cre02.g078316.t1.2	Cre02.g078316.t1.2		706087,708648,708996	708441,708846,709968	
chr2	709971	717846	711513	717414	-	Cre02.g078350.t1.2	Cre02.g078350.t1.2		717181,716860,716294,715858,715593,715402,715161,714829,714445,714196,713901,713692,713316,711745,709971	717846,716955,716342,715929,715651,715483,715282,714968,714635,714243,713969,713798,713547,713106,711606	
chr2	719161	726176	720270	726097	-	Cre02.g078400.t1.1	Cre02.g078400.t1.1		725870,725498,725305,724852,724630,724439,724201,723881,723506,723266,722922,722665,721446,720634,719161	726176,725593,725353,724923,724688,724520,724322,724020,723696,723313,722990,722771,722499,721293,720417	
chr2	726231	732216	727193	731673	-	Cre02.g078450.t1.1	Cre02.g078450.t1.1		731921,730749,730371,730011,729709,729298,728968,728541,728051,727630,726231	732216,731701,730500,730115,729831,729383,729099,728665,728222,727758,727445	
chr2	732757	736468	733240	733951	+	Cre02.g078476.t1.1	Cre02.g078476.t1.1		732757,733402,733796	733306,733531,736468	
chr2	738382	741367	739741	741002	-	Cre02.g078500.t1.2	Cre02.g078500.t1.2		741132,740809,740539,740055,738382	741367,741019,740662,740150,739850	
chr2	743966	747032	744579	746957	-	Cre02.g078507.t1.2	Cre02.g078507.t1.2		746865,746291,746079,745823,745483,744972,743966	747032,746406,746145,745887,745577,745135,744664	
chr2	747148	750829	747249	750297	+	FAP210	Cre02.g078550.t1.2		747148,747371,747561,747864,748328,748799,749194,749778	747303,747466,747629,748094,748495,748943,749300,750829	Flagellar Associated Protein, found in the flagellar proteome
chr2	750832	752767	751423	752561	-	RSP8	Cre02.g078600.t1.2		750832	752767	An armadillo repeat protein in the radial spoke stalk [PMID: 16507594; GI:83284711]
chr2	753529	759687	754327	759553	-	Cre02.g078650.t1.1	Cre02.g078650.t1.1		759410,759021,758613,758354,758082,757716,757246,756742,756359,755884,755569,755186,754755,753529	759687,759144,758733,758400,758156,757778,757382,756904,756424,755948,755713,755349,754794,754540	
chr2	759828	765963	760020	765294	+	Cre02.g078700.t1.1	Cre02.g078700.t1.1		759828,760204,760521,760893,761135,761431,761676,761970,762161,762433,762712,763067	760080,760221,760604,761024,761217,761485,761798,762015,762276,762526,762856,765963	
chr2	766108	771099	766203	770236	+	PUS3	Cre02.g078750.t1.1		766108,766365,766750,767274,767688,767930,768583,768900,769361,769796,770086	766305,766478,766830,767414,767753,768307,768603,769005,769487,769907,771099	RNA pseudouridine synthase, mitochondrial precursor
chr2	771148	777657	771589	776030	+	PHC16	Cre02.g078777.t1.1		771148,771585,771974,772299,772671,772980,773813,774088,774538,774777,775546,775876	771348,771665,772131,772500,772815,773424,773881,774225,774613,775348,775676,777657	pherophorin-C16 (PHC16) [PMID: 16367971]; similar to extracellular matrix protein (cell wall protein) pherophorin-C1 [Genbank entry DQ196107], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain
chr2	778398	782412	778947	781612	+	PHC40	Cre02.g078804.t1.1		778398,779073,779293,779619,779986,780296,780670,781148,781446	778999,779141,779444,779820,780130,780583,780931,781278,782412	
chr2	782422	784617	782523	784329	-	Cre02.g078831.t1.1	Cre02.g078831.t1.1		783336,782705,782422	784617,783094,782523	
chr2	784758	790917	784981	790298	+	PSN1	Cre02.g078858.t1.1		784758,785425,785913,786266,786518,786747,787107,788086,788400,788770,789327,789693,790113	785149,785535,785993,786331,786571,786881,787621,788251,788564,789050,789438,789828,790917	Transmembrane peptidase, belongs to the A22 family of aspartyl proteases; cleaves type I substrates only (C-terminus towards the cytosol); an insertional mutant in PSN1 shows slight Rose Bengal and metronidazole sensitivity (Dent et al., 2005).
chr2	791108	804365	791339	803944	+	Cre02.g078885.t1.1	Cre02.g078885.t1.1		791108,791639,792173,792675,792960,793369,793883,794307,794666,794937,795191,795613,796109,796558,797422,797888,798381,798763,799210,799678,800098,800515,800858,801158,801557,801917,802386,802879,803288,803713	791486,791745,792245,792799,793038,793530,793987,794360,794733,795064,795330,795798,796204,796605,797544,797989,798481,798910,799260,799806,800211,800620,800958,801232,801653,802050,802545,803056,803471,804365	
chr2	804438	807179	804503	806680	+	Cre02.g078912.t1.1	Cre02.g078912.t1.1		804438,804912,805357,805990,806289,806579	804554,805114,805820,806060,806364,807179	
chr2	807222	812597	807954	812527	-	Cre02.g078939.t1.1	Cre02.g078939.t1.1		812464,811850,811528,811206,810639,810268,809874,809594,809125,808753,808326,807222	812597,812059,811620,811293,810845,810511,810037,809681,809285,808946,808518,808088	
chr2	838688	845320	839074	844005	+	MMP17	Cre02.g078950.t1.1		838688,840060,840816,841482,841787,842138,842493,842918,843315,843635,843962	839750,840313,841337,841591,841931,842275,842702,843217,843449,843774,845320	Matrix metalloproteinase belonging to the M11 peptidase family
chr2	812718	820229	812836	820184	+	FTSH9	Cre02.g078966.t1.1		812718,813776,814610,815002,815352,815776,816154,816665,817460,817904,818383,818816,819360,819800	813438,814346,814738,815076,815496,815862,816246,816834,817594,818014,818538,818988,819474,820229	predicted chloroplast-targeted, like Arabidopsis ortholog
chr2	822596	827567	823020	827021	-	Cre02.g079000.t1.2	Cre02.g079000.t1.2		827340,826881,826548,826240,825845,825207,824922,824258,823697,823423,822596	827567,827077,826629,826312,825982,825394,825001,824407,823884,823529,823179	
chr2	828268	831199	828783	830958	+	Cre02.g079003.t1.1	Cre02.g079003.t1.1		828268,830052,830416,830763	829839,830221,830524,831199	
chr2	834948	838547	835148	837182	+	Cre02.g079004.t1.1	Cre02.g079004.t1.1		834948,835597,836207,836963	835157,835897,836460,838547	
chr2	850328	857700	850686	857130	-	Cre02.g079005.t1.1	Cre02.g079005.t1.1		857449,856990,856657,856349,855954,855316,855031,854366,853805,853531,852677,850328	857700,857186,856738,856421,856091,855503,855110,854515,853992,853637,853287,850686	
chr2	858388	863059	858892	862702	+	DGTT5	Cre02.g079050.t1.1		858388,860161,860525,860872,861344,862120,862481	859948,860330,860633,861035,861737,862192,863059	
chr2	863200	865867	863938	865526	-	Cre02.g079100.t1.1	Cre02.g079100.t1.1		865810,865663,865502,865235,864925,864126,863200	865867,865728,865555,865306,865114,864751,863938	belongs to Rad14/XPA family
chr2	863200	865867	863945	865526	-	Cre02.g079100.t2.1	Cre02.g079100.t2.1		865810,865663,865502,865235,864925,864126,863200	865867,865728,865555,865306,865114,864751,863945	belongs to Rad14/XPA family
chr2	865942	870697	866234	870656	-	Cre02.g079150.t1.1	Cre02.g079150.t1.1		870622,870285,870068,869775,868766,868280,867864,867013,866669,865942	870697,870423,870149,869878,869509,868459,868054,867126,866781,866459	
chr2	870798	873172	871026	872789	+	Cre02.g079200.t1.2	Cre02.g079200.t1.2		870798,871374,871780,871999,872403,872675	871214,871503,871785,872142,872450,873172	
chr2	873308	877008	873388	876600	+	Cre02.g079250.t1.1	Cre02.g079250.t1.1		873308,873556,873719,875458,876235,876460	873483,873647,875368,876096,876345,877008	
chr2	877148	881843	877451	881032	+	VPS4	Cre02.g079300.t1.2		877148,877737,878072,878322,878568,878911,879300,879578,879951,880294,880903	877631,877862,878146,878409,878686,879009,879383,879755,880094,880382,881843	Expressed Protein. Similar to VPS4/SKD1 AAA-ATPase, involved in vacuolar protein transport
chr2	881898	896785	882139	895679	+	Cre02.g079351.t1.1	Cre02.g079351.t1.1		881898,888481,888877,889537,890006,890292,890825,891487,891805,892415,892680,892990,893528,893721,894100,894308	888406,888768,889226,889882,890101,890593,891345,891620,892206,892508,892768,893232,893602,893859,894173,896785	
chr2	897929	899874	897956	898997	+	Cre02.g079400.t1.2	Cre02.g079400.t1.2		897929,898862	898262,899874	
chr2	899921	905352	900246	904442	+	Cre02.g079450.t1.1	Cre02.g079450.t1.1		899921,900455,900994,901274,901667,902319,902728,903017,903434,903818	900259,900744,901086,901548,902184,902551,902883,903254,903672,905352	null-allele mutant was isolated (PMID 29743196)
chr2	905393	910700	906392	910389	-	Cre02.g079500.t1.1	Cre02.g079500.t1.1		910379,908487,907942,907501,905393	910700,909895,908329,907760,907319	
chr2	913701	919551	913805	918954	+	DRP2	Cre02.g079550.t1.2		913701,914079,914585,914820,915311,915619,916094,916486,916847,917179,917580,918053,918381	913859,914213,914698,914968,915450,915930,916300,916650,917048,917337,917814,918214,919551	Similar to the DRP2 (ADL3/ADL6) class of Dynamin GTPases involved in many vesicle trafficking events at the Golgi, Plasma membrane, etc.; in Matsuo et al. (2008), roc110 maps to this locu. ts lethal mutations isolated (PMID 25336509)
chr2	919601	922753	919710	922143	+	TSF2	Cre02.g079600.t1.2		919601,920857,921337,921724,922046	920559,921000,921447,921827,922753	Phenylalanyl-tRNA synthetase with homology to biotin synthetase
chr2	924222	928590	924842	928093	-	Cre02.g079650.t1.1	Cre02.g079650.t1.1		928081,927534,927244,926672,926422,926025,925702,924222	928590,927719,927316,927006,926505,926198,925813,925570	
chr2	928989	933810	929825	933492	-	PYR2	Cre02.g079700.t1.2		933053,932680,932247,931646,931136,930668,928989	933810,932819,932432,931729,931190,930750,929957	Aspartate carbamoyltransferase (PYRB)[EC:2.1.3.2]
chr2	934231	945922	934543	944598	+	HKR1	Cre02.g079750.t1.1		934231,934849,936783,937159,937471,937825,938241,938596,940523,940844,941150,941854,942327,943409,943855,944147,944418	934636,936366,936898,937243,937641,938008,938368,940281,940671,940943,941554,941970,943019,943591,943982,944258,945922	contains PAS, Histidine kinase and signal receiver domains
chr2	945925	947599	946866	947550	-	ASA6	Cre02.g079800.t1.2		947468,945925	947599,947237	Mitochondrial ATP synthase associated protein 6; part of peripheral stalk involed in dimerization; unknown evolutionary origin [PMID: 11744727, PMID: 15710684]
chr2	947701	954802	947995	953316	+	POLK1	Cre02.g079850.t1.1		947701,948665,948996,949370,949669,949991,950204,950434,950856,951229,951475,951743,952038	948525,948782,949115,949441,949758,950080,950290,950472,951005,951327,951561,951880,954802	Homologous to eukaryotic DNA polymerase kappa; nuclear; functions in translesion synthesis (TLS) of damaged DNA; null-allele mutant was isolated (PMID 29743196)
chr2	954805	963880	955312	963107	-	PHC64	Cre02.g079926.t1.1		963027,962621,962246,961161,959061,958274,958044,957558,957353,957111,956909,956635,955989,955671,954805	963880,962885,962410,962063,960976,958934,958124,957901,957430,957202,956999,956736,956433,955734,955521	contains LTP domain
chr2	963981	965265	964085	964782	+	Cre02.g080000.t1.2	Cre02.g080000.t1.2		963981,964215,964754	964096,964649,965265	
chr2	965915	970090	967072	969601	-	Cre02.g080050.t1.2	Cre02.g080050.t1.2		969987,969537,969294,968882,968531,965915	970090,969670,969381,968990,968590,968275	
chr2	970971	977802	971132	977363	+	Cre02.g080100.t1.1	Cre02.g080100.t1.1		970971,971238,971486,971809,972126,972459,972752,973151,973562,974058,974891,975470,975823,976168	971163,971328,971612,971889,972218,972543,972867,973261,973645,974699,975017,975630,975956,977802	Similar to cleavage and polyadenylation specificity factor subunit 3; contains an RNA-metabolising metallo-beta-lactamase, a beta-Casp and a RRM domain; additional C-terminal comain not conserved in other organisms, except Volvox
chr2	977911	984212	977942	983152	+	Cre02.g080150.t1.1	Cre02.g080150.t1.1		977911,978286,978769,979029,979510,979834,980289,980970,981618,981988	977970,978557,978861,979366,979660,980134,980530,981360,981859,984212	
chr2	984214	988819	985093	988772	-	TRK1	Cre02.g080200.t1.2		988367,988166,987487,986812,986282,984214	988819,988256,987595,987058,986590,986089	
chr2	989001	992395	989329	991688	+	YLMG1	Cre02.g080250.t1.2		989001,989689,990789,991165,991583	989458,989832,990878,991260,992395	
chr2	992405	998280	992741	997846	-	Cre02.g080300.t1.2	Cre02.g080300.t1.2		997674,997262,996915,995200,992405	998280,997470,997007,996747,995036	
chr2	998461	1008172	998870	1007712	+	Cre02.g080350.t1.1	Cre02.g080350.t1.1		998461,998842,999326,999601,1000489,1000884,1001209,1001605,1002017,1002543,1002909,1003304,1003939,1004440,1004712,1005324,1005609,1006019,1006427,1006836,1007150,1007612	998566,999032,999403,999789,1000616,1000977,1001317,1001696,1002184,1002671,1002987,1003449,1004133,1004532,1004894,1005430,1005798,1006196,1006563,1006913,1007352,1008172	
chr2	1008300	1012195	1009044	1012074	-	Cre02.g080400.t1.1	Cre02.g080400.t1.1		1011786,1011045,1010641,1010201,1009793,1009457,1008300	1012195,1011566,1010834,1010451,1009932,1009620,1009150	
chr2	1012336	1021406	1012648	1020870	+	Cre02.g080450.t1.2	Cre02.g080450.t1.2		1012336,1012918,1014095,1014431,1017846,1018185,1019188	1012792,1013934,1014268,1017707,1018024,1019058,1021406	
chr2	1021430	1026165	1022359	1026074	-	Cre02.g080500.t1.2	Cre02.g080500.t1.2		1025897,1025211,1024756,1024387,1024052,1023798,1023427,1021430	1026165,1025732,1024905,1024574,1024214,1023851,1023614,1023137	
chr2	1026220	1034795	1026374	1034445	-	PDE26	Cre02.g080550.t1.1		1033879,1033260,1032646,1031998,1031282,1030933,1030415,1029928,1029423,1029159,1028657,1028203,1027938,1027547,1027157,1026637,1026220	1034795,1033635,1033143,1032417,1031467,1031066,1030676,1030131,1029752,1029239,1028915,1028363,1027982,1027699,1027401,1026887,1026523	Metal-dependent phosphohydrolase with actin-like ATPase domain and HSP7 peptide-binding domain
chr2	1035017	1040455	1035668	1040047	-	BIP2	Cre02.g080600.t1.2		1040004,1039531,1039093,1038425,1038040,1037605,1037150,1036711,1036066,1035017	1040455,1039876,1039330,1038790,1038159,1037797,1037322,1036860,1036351,1035814	BIP2 is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; contains an ER retention motif, an ER-targeting sequence and is most similar to ER-HSP70s from other organisms [PMID: 16143837]; forms a cluster with ER-targeted chaperones HSP90B and BIP1 [PMID: 16143837]
chr2	1040659	1047025	1041233	1046875	-	HSP90B	Cre02.g080650.t1.2		1046814,1046633,1045966,1045604,1045222,1044658,1044370,1044009,1043329,1042835,1042321,1041865,1040659	1047025,1046735,1046312,1045730,1045333,1044832,1044433,1044120,1043695,1043068,1042523,1042032,1041620	HSP90B is one of 3 HSP90 genes in Chlamydomonas; HSP90B is localized to the ER; PMID: 16143837 and 15995001; forms a cluster with ER-targeted chaperones BIP1 and BIP2 [PMID: 16143837]
chr2	1049846	1055344	1049937	1053206	+	BIP1	Cre02.g080700.t1.2		1049846,1050037,1050403,1050903,1051483,1051837,1052433,1053069	1049971,1050310,1050640,1051268,1051602,1052202,1052868,1055344	BIP1 is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; BIP1 contains an ER retention motif, an ER-targeting sequence and is most similar to ER-HSP70s from other organisms; it forms a cluster with ER-targeted chaperones HSP90B and BIP2 [PMID: 16143837]
chr2	1056256	1066049	1056905	1064041	+	Cre02.g080750.t1.2	Cre02.g080750.t1.2		1056256,1056855,1057930,1059143,1059493,1059918,1060563,1060940,1061547,1061946,1062277,1063185,1063702	1056579,1057646,1059021,1059320,1059745,1060404,1060709,1061406,1061730,1062071,1062981,1063439,1066049	
chr2	1068216	1073691	1068459	1073590	+	Cre02.g080800.t1.2	Cre02.g080800.t1.2		1068216,1069282,1069576,1069954,1070318,1071116,1071946,1072392,1072836,1073208	1069017,1069411,1069643,1070174,1070880,1071694,1071991,1072502,1072979,1073691	
chr2	1073710	1076445	1073952	1076407	-	CYN47	Cre02.g080850.t1.2		1076386,1076036,1075623,1075220,1074912,1074689,1074419,1073710	1076445,1076230,1075778,1075278,1074947,1074737,1074538,1074129	Putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type; some similarity to CYN48-CYN53
chr2	1076500	1079245	1077124	1079161	-	PRX4	Cre02.g080900.t1.2		1078894,1078691,1078111,1077643,1076500	1079245,1078768,1078218,1077777,1077217	thioredoxin dependent peroxidase, N-terminal sequence predicted as a chloroplast targeting signal BUT the protein is more closely related to mitochondrial type II PRX from Arabidopsis (AtPRXIIF)
chr2	1079349	1082617	1079760	1081172	+	Cre02.g080950.t1.2	Cre02.g080950.t1.2		1079349,1081057	1080752,1082617	
chr2	1082632	1084005	1083000	1083775	-	EXN4	Cre02.g081000.t1.2		1082632	1084005	ribonuclease H fold
chr2	1084106	1089242	1084211	1088332	+	FAP24	Cre02.g081050.t1.2		1084106,1084511,1085313,1085669,1086058,1086398,1086751,1087026,1087428,1087786,1088148	1084397,1084558,1085477,1085750,1086157,1086558,1086866,1087197,1087609,1087979,1089242	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr2	1089446	1093312	1089765	1092323	+	Cre02.g081100.t1.2	Cre02.g081100.t1.2		1089446,1090386,1090586,1090864,1091356,1091850,1092195	1090206,1090418,1090677,1090936,1091478,1091985,1093312	
chr2	1093366	1097134	1093385	1097001	+	Cre02.g081150.t1.1	Cre02.g081150.t1.1		1093366,1093615,1093836,1094458,1094871,1095207,1095468,1096992	1093531,1093707,1094322,1094615,1095002,1095319,1095922,1097134	
chr2	1097186	1100825	1097279	1100543	+	Cre02.g081176.t1.2	Cre02.g081176.t1.2		1097186,1097565,1097871,1098728,1099039,1099276,1099595,1100327	1097437,1097642,1097982,1098813,1099132,1099329,1100032,1100825	
chr2	1097186	1100825	1097279	1100543	+	Cre02.g081176.t2.1	Cre02.g081176.t2.1		1097186,1097565,1097871,1098728,1099042,1099276,1099595,1100327	1097437,1097642,1097982,1098813,1099132,1099329,1100032,1100825	
chr2	1100841	1104675	1101214	1104396	-	Cre02.g081200.t1.2	Cre02.g081200.t1.2		1104179,1103862,1103625,1103213,1102707,1102297,1102099,1101854,1100841	1104675,1103936,1103659,1103349,1102813,1102384,1102171,1102009,1101424	
chr2	1104730	1115025	1107310	1114878	-	Cre02.g081250.t1.2	Cre02.g081250.t1.2		1114619,1114293,1113853,1112556,1112285,1111850,1111477,1111172,1110760,1110212,1109714,1109488,1109161,1108820,1108444,1107712,1104730	1115025,1114361,1113997,1112616,1112332,1111978,1111617,1111234,1110810,1110349,1109968,1109592,1109256,1108903,1108530,1108154,1107428	
chr2	1115203	1119675	1115767	1119398	-	Cre02.g081300.t1.1	Cre02.g081300.t1.1		1119361,1118141,1117911,1117579,1117154,1116685,1116373,1115203	1119675,1119156,1118021,1117656,1117396,1117044,1116453,1116055	
chr2	1119836	1125977	1120628	1125335	+	Cre02.g081350.t1.1	Cre02.g081350.t1.1		1119836,1121113,1121301,1121754,1124350,1124867,1125233	1120843,1121164,1121348,1124014,1124476,1124974,1125977	Isochorimatase family, involved in nicotinate nucleotide salvage pathway
chr2	1125985	1130495	1126554	1130060	-	BCA1	Cre02.g081400.t1.2		1130043,1129439,1128862,1128495,1128147,1127692,1126920,1125985	1130495,1129712,1129194,1128626,1128316,1127875,1127463,1126739	putative plastidic branched chain amino acid aminotransferase (BCAT) (EC:2.6.1.42); class IV aminotransferase
chr2	1130584	1133435	1130934	1133247	-	CGL123	Cre02.g081450.t1.2		1133024,1132410,1131994,1131595,1131156,1130584	1133435,1132759,1132176,1131752,1131291,1130985	Conserved in the Green Lineage
chr2	1133536	1138277	1133674	1137693	+	Cre02.g081500.t1.2	Cre02.g081500.t1.2		1133536,1133963,1134673,1135106,1135586,1136089,1136662,1136949,1137435	1133740,1134036,1134841,1135236,1135733,1136224,1136750,1137020,1138277	UAA transporter
chr2	1138326	1140856	1138364	1140170	+	Cre02.g081550.t1.2	Cre02.g081550.t1.2		1138326,1139008,1139348,1139726,1140049	1138562,1139087,1139413,1139809,1140856	
chr2	1140860	1146485	1141518	1146365	-	PFH8	Cre02.g081600.t1.1		1146225,1146028,1145653,1145279,1145028,1144594,1144232,1143993,1143533,1143292,1142700,1142164,1141875,1140860	1146485,1146071,1145762,1145338,1145050,1144678,1144315,1144078,1143563,1143355,1142812,1142262,1141955,1141611	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_5128; contains C-terminal ShK domain
chr2	1146616	1153507	1146793	1152568	+	Cre02.g081650.t1.2	Cre02.g081650.t1.2		1146616,1147041,1147510,1147929,1148359,1148819,1149214,1149528,1149932,1150395,1150804,1151062,1151404,1151922,1152338	1146907,1147213,1147612,1148031,1148470,1148956,1149346,1149707,1150098,1150503,1150911,1151203,1151606,1152072,1153507	
chr2	1153656	1157872	1154125	1156760	+	PHC66	Cre02.g081700.t1.1		1153656,1154085,1154349,1154775,1155064,1155490	1153981,1154214,1154521,1154842,1155230,1157872	
chr2	1159830	1162676	1161481	1162576	-	Cre02.g081750.t1.1	Cre02.g081750.t1.1		1162482,1162282,1161868,1159830	1162676,1162324,1161938,1161669	
chr2	1162731	1176266	1163547	1175737	-	Cre02.g081800.t1.2	Cre02.g081800.t1.2		1175678,1175437,1175149,1174813,1174417,1174064,1173856,1172777,1172130,1171803,1171345,1170908,1170540,1170295,1170038,1168771,1167385,1165920,1165672,1165465,1165090,1164795,1164422,1164093,1163815,1162731	1176266,1175551,1175174,1174990,1174522,1174124,1173930,1173723,1172343,1172016,1171642,1171120,1170615,1170344,1170105,1169811,1168487,1167090,1165764,1165521,1165209,1164932,1164667,1164212,1163901,1163625	
chr2	1176321	1181216	1176534	1181088	-	Cre02.g081850.t1.1	Cre02.g081850.t1.1		1180860,1180581,1180052,1179793,1179482,1178977,1178656,1178317,1178083,1177798,1177444,1177049,1176321	1181216,1180680,1180217,1179848,1179612,1179030,1178830,1178454,1178148,1177877,1177592,1177178,1176888	
chr2	1181367	1185178	1181724	1185026	+	Cre02.g081900.t1.2	Cre02.g081900.t1.2		1181367,1182105,1182900,1183309,1183902	1181961,1182711,1183081,1183654,1185178	
chr2	1185198	1196816	1186802	1196369	-	Cre02.g081950.t1.1	Cre02.g081950.t1.1		1196120,1195911,1194499,1192452,1191473,1191104,1190784,1190428,1189833,1189571,1189262,1188903,1188630,1188425,1188175,1187942,1187752,1187504,1187159,1185198	1196816,1196050,1195162,1194344,1192319,1191221,1190913,1190544,1190084,1189673,1189413,1188973,1188709,1188447,1188233,1187976,1187785,1187521,1187275,1186899	
chr2	1197601	1203596	1198420	1203380	-	AGE1	Cre02.g082000.t1.2		1203340,1202994,1202604,1202347,1201969,1201541,1201291,1200590,1199975,1199726,1197601	1203596,1203157,1202801,1202468,1202060,1201617,1201407,1200745,1200349,1199759,1199427	ChromDB DNG342; HhH-GPD superfamily base excision DNA repair protein.  Oxidizatively damaged G (8-oxoG) can mispair with  A and C.  This MutY homolog probably works on excising A when mispaired with 8-oxoG; if uncorrected, this ca
chr2	1203707	1208178	1203881	1207327	+	Cre02.g082050.t1.1	Cre02.g082050.t1.1		1203707,1204170,1204368,1204986,1205486,1205804,1206211	1203953,1204181,1204432,1205196,1205590,1206028,1208178	
chr2	1208211	1210466	1209205	1210168	-	Cre02.g082100.t1.1	Cre02.g082100.t1.1		1209620,1209365,1208211	1210466,1209411,1209205	
chr2	1210761	1213406	1211117	1213264	-	Cre02.g082150.t1.1	Cre02.g082150.t1.1		1212745,1212040,1211782,1211254,1210761	1213406,1212126,1211891,1211371,1211174	
chr2	1213581	1217806	1213977	1217552	-	HSK1	Cre02.g082200.t1.1		1217080,1216841,1216374,1216121,1215764,1215096,1214587,1214168,1213581	1217806,1216890,1216463,1216230,1215841,1215189,1214716,1214307,1214016	putative homoserine kinase (EC:2.7.1.39), based on similarity to Arabidopsis homoserine kinase (GenBank AAD33097); Target-P predicts mitochondrial targeting sequence; predicted as plastidic based on homology; closely related to nearby HSK2
chr2	1217861	1222986	1218449	1222817	-	HSK2	Cre02.g082250.t1.1		1222956,1222616,1222049,1221603,1221249,1220988,1220625,1219574,1219059,1218640,1217861	1222986,1222820,1222120,1221719,1221344,1221097,1220702,1219667,1219188,1218779,1218488	putative homoserine kinase (EC:2.7.1.39), based on similarity to Arabidopsis homoserine kinase (GenBank AAD33097); Target-P predicts mitochondrial targeting sequence; predicted as plastidic based on homology; closely related to nearby HSK1
chr2	1223117	1226388	1223303	1225842	+	SUR6	Cre02.g082300.t1.2		1223117,1224069,1224882,1225314,1225584	1223744,1224426,1224994,1225370,1226388	putative component of the nucleolar matrix with strong binding capacity for nucleic acids.  Surfeit genes are believed to play a role as housekeeping genes.  While tightly clustered in vertebrates, surfeit loci seem unlinked in invertebrates
chr2	1226391	1229096	1227111	1228636	-	CUTA1	Cre02.g082350.t1.1		1228845,1228347,1228006,1227484,1226391	1229096,1228731,1228139,1227582,1227330	related to copper binding protein CutA found in chloroplasts of Arabidopsis and ubiquitously distributed in other organisms
chr2	1226391	1229096	1227111	1228954	-	CUTA1	Cre02.g082350.t2.1		1228845,1228006,1227484,1226391	1229096,1228139,1227582,1227330	related to copper binding protein CutA found in chloroplasts of Arabidopsis and ubiquitously distributed in other organisms
chr2	1230357	1234448	1230493	1234404	+	Cre02.g082400.t1.1	Cre02.g082400.t1.1		1230357,1230792,1231284,1231874,1232620,1233252	1230676,1231098,1231735,1232445,1233022,1234448	
chr2	1234451	1240416	1234953	1240331	-	Cre02.g082450.t1.2	Cre02.g082450.t1.2		1239962,1239493,1239117,1238384,1237986,1237301,1236962,1236136,1235524,1234451	1240416,1239594,1239181,1238786,1238096,1237780,1237091,1236657,1235891,1235064	
chr2	1241637	1244122	1241804	1243275	+	PSAN	Cre02.g082500.t1.1		1241637,1242017,1242222,1242547,1242843,1243055,1243224	1241827,1242089,1242290,1242685,1242887,1243074,1244122	Chloroplast precursor
chr2	1244277	1250969	1244696	1249836	+	ZEP1	Cre02.g082550.t1.2		1244277,1245291,1245965,1246411,1246799,1247158,1247912,1248301,1248704,1249125	1245095,1245415,1246072,1246495,1246934,1247266,1248067,1248545,1248921,1250969	zeaxanthin epoxidase, chloroplast precursor (ABA1) (NPQ2) [PMID:12671093]
chr2	1250999	1251706	1251348	1251616	-	Cre02.g082576.t1.1	Cre02.g082576.t1.1		1250999	1251706	
chr2	1252137	1256570	1252805	1256075	+	Cre02.g082600.t1.1	Cre02.g082600.t1.1		1252137,1252439,1252576,1252775,1253574,1254285,1254687,1255146,1255739,1256075	1252329,1252479,1252593,1253197,1253916,1254379,1254797,1255367,1255889,1256570	null-allele passenger mutation was isolated (PMID 29743196)
chr2	1256712	1258756	1257004	1258657	-	Cre02.g082651.t1.1	Cre02.g082651.t1.1		1258330,1258118,1257959,1257515,1256712	1258756,1258179,1258001,1257760,1257301	
chr2	1259187	1265628	1259448	1265160	+	COX15	Cre02.g082700.t1.2		1259187,1259942,1260201,1260450,1260830,1261233,1261626,1262096,1262795,1263105,1263578,1264110,1264443,1264932	1259766,1259981,1260331,1260669,1260906,1261294,1261749,1262134,1262900,1263239,1263725,1264233,1264505,1265628	involved in assembly of mitochondrial complex IV
chr2	1265927	1267150	1266282	1266774	+	PSBX	Cre02.g082750.t1.2		1265927,1266434,1266563	1266340,1266470,1267150	Encoding a 4.1 kDa subunit for PS2 with a single trans-membrane helix [PMID: 16143838].
chr2	1267371	1268936	1268115	1268909	-	Cre02.g082800.t1.2	Cre02.g082800.t1.2		1268687,1267371	1268936,1268592	
chr2	1268991	1328216	1269549	1271168	-	TSS1	Cre02.g082825.t1.1		1327991,1271021,1270395,1269974,1268991	1328216,1271169,1270546,1270178,1269636	transfers seryl moiety to tRNA-Ser and to tRNA-Sec (for selenocysteine synthesis)
chr2	1328317	1334588	1328409	1333732	+	Cre02.g082852.t1.1	Cre02.g082852.t1.1		1328317,1328561,1328690,1330625,1332850,1333732	1328467,1328597,1329282,1331354,1333533,1334588	
chr2	1334591	1342516	1335327	1342336	-	Cre02.g082877.t1.1	Cre02.g082877.t1.1		1342195,1341698,1340600,1340150,1339663,1339283,1338680,1338233,1337607,1337186,1336769,1335899,1334591	1342516,1341790,1340698,1340242,1339743,1339381,1338833,1338381,1337758,1337390,1336848,1336100,1335804	
chr2	1342571	1348606	1342847	1348325	-	Cre02.g082900.t1.1	Cre02.g082900.t1.1		1348280,1347723,1347454,1347073,1346246,1345687,1344647,1343940,1342571	1348606,1347947,1347527,1347154,1346452,1345855,1345302,1344355,1343436	
chr2	1348661	1353616	1349010	1353306	-	Cre02.g082950.t1.1	Cre02.g082950.t1.1		1353181,1352081,1351724,1351158,1350895,1350367,1349947,1349518,1348661	1353616,1352744,1351873,1351244,1350955,1350470,1350075,1349658,1349148	
chr2	1353722	1356656	1354223	1356429	-	Cre02.g083000.t1.2	Cre02.g083000.t1.2		1354749,1353722	1356656,1354469	
chr2	1357111	1360069	1357255	1359768	+	Cre02.g083050.t1.1	Cre02.g083050.t1.1		1357111,1357516,1357985,1358286,1359534	1357396,1357705,1358085,1359275,1360069	
chr2	1360141	1366339	1360168	1366007	+	Cre02.g083065.t1.2	Cre02.g083065.t1.2		1360141,1360492,1360936,1361367,1361704,1362165,1362560,1362895,1363208,1364242,1364701,1365156,1365625	1360227,1360699,1360977,1361490,1361806,1362286,1362630,1362967,1363391,1364341,1364831,1365272,1366339	
chr2	1366550	1368570	1366881	1368478	-	PRL1	Cre02.g083100.t1.2		1368396,1367928,1367640,1367111,1366550	1368570,1368218,1367776,1367358,1366960	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr2	1368831	1376067	1368958	1374871	+	Cre02.g083180.t1.1	Cre02.g083180.t1.1		1368831,1370035,1370341,1374335	1369741,1370123,1374233,1376067	
chr2	1376069	1380500	1376826	1379905	-	Cre02.g083259.t1.2	Cre02.g083259.t1.2		1376069	1380500	
chr2	1380565	1385040	1380701	1384286	-	Cre02.g083273.t1.2	Cre02.g083273.t1.2		1384579,1384029,1381740,1380565	1385040,1384469,1383620,1381554	
chr2	1387981	1392451	1388077	1391563	+	Cre02.g083300.t1.1	Cre02.g083300.t1.1		1387981,1388209,1388365,1388588,1389514,1390006,1390670,1391248,1391537	1388091,1388239,1388429,1389116,1389636,1390274,1391105,1391380,1392451	
chr2	1392524	1393740	1393033	1393698	-	Cre02.g083350.t1.1	Cre02.g083350.t1.1		1393476,1392524	1393740,1393336	
chr2	1393817	1405580	1394179	1405403	-	Cre02.g083354.t1.2	Cre02.g083354.t1.2		1405347,1404673,1404304,1403887,1403248,1402884,1402396,1401932,1401384,1400985,1400664,1400079,1399710,1399300,1398981,1398400,1398093,1397569,1397079,1396702,1396262,1395718,1394865,1393817	1405580,1404763,1404420,1404064,1403591,1403044,1402543,1402015,1401518,1401104,1400717,1400189,1399826,1399368,1399071,1398490,1398168,1397682,1397141,1396818,1396387,1395801,1395095,1394257	
chr2	1393817	1405580	1394179	1405403	-	Cre02.g083354.t2.1	Cre02.g083354.t2.1		1405347,1404673,1404304,1403887,1403248,1402884,1402396,1401932,1401384,1400985,1400664,1400079,1399710,1399300,1398981,1398400,1398093,1397569,1397079,1396702,1396262,1395718,1393817	1405580,1404763,1404420,1404064,1403591,1403044,1402543,1402015,1401518,1401104,1400717,1400189,1399826,1399368,1399071,1398490,1398168,1397682,1397141,1396818,1396387,1395801,1394257	
chr2	1406091	1412672	1406117	1412030	+	Cre02.g083400.t1.1	Cre02.g083400.t1.1		1406091,1407122,1407526,1408257,1409358,1410057,1410490,1410874,1411197,1411520,1411928	1406759,1407207,1407970,1408830,1409486,1410119,1410644,1410981,1411292,1411609,1412672	
chr2	1412831	1419266	1413055	1418697	+	Cre02.g083450.t1.1	Cre02.g083450.t1.1		1412831,1414120,1414448,1414913,1415677,1416106,1417234,1417668,1417944,1418574	1413229,1414223,1414770,1415211,1415811,1416364,1417394,1417808,1418228,1419266	
chr2	1419285	1425470	1419670	1425064	-	Cre02.g083500.t1.2	Cre02.g083500.t1.2		1424944,1424569,1424247,1423860,1423198,1422702,1422221,1421908,1421647,1421221,1420635,1420341,1420040,1419285	1425470,1424675,1424321,1423963,1423445,1422998,1422464,1422018,1421687,1421361,1420708,1420398,1420171,1419871	FAD dependent oxidoreductase, possible salicylate 1-monooxygenase
chr2	1425651	1431112	1425752	1430783	+	Cre02.g083550.t1.1	Cre02.g083550.t1.1		1425651,1426548,1427043,1427323,1427904,1428452,1428791,1429211,1429598,1429921,1430303	1425998,1426651,1427115,1427428,1428148,1428577,1428949,1429325,1429746,1430061,1431112	
chr2	1431161	1438042	1431274	1437372	+	Cre02.g083600.t2.1	Cre02.g083600.t2.1		1431161,1431827,1432486,1432933,1433224,1433746,1434184,1434489,1434899,1435335,1435944,1436230,1436552,1436854,1437046,1437342	1431410,1431944,1432525,1433013,1433301,1433841,1434225,1434530,1435030,1435421,1436051,1436322,1436618,1436882,1437078,1438042	
chr2	1430981	1438042	1431274	1437372	+	Cre02.g083600.t1.2	Cre02.g083600.t1.2		1430981,1431827,1432486,1432933,1433224,1433746,1434184,1434489,1434899,1435335,1435944,1436230,1436552,1436854,1437046,1437342	1431410,1431944,1432525,1433013,1433301,1433841,1434225,1434530,1435030,1435421,1436051,1436322,1436618,1436882,1437078,1438042	
chr2	1438045	1440580	1438683	1440400	-	Cre02.g083650.t1.1	Cre02.g083650.t1.1		1440336,1440103,1439903,1439742,1439427,1439191,1439012,1438045	1440580,1440183,1439924,1439792,1439475,1439269,1439079,1438863	
chr2	1440801	1447138	1440939	1446544	+	LSP1	Cre02.g083700.t1.1		1440801,1441271,1441594,1445566	1441149,1441441,1445385,1447138	Putative signal transducer for phototaxis; essential for normal phototaxis behavior [PMID: 15657081, independent sequence: AB194902]
chr2	1447851	1458155	1448032	1455586	+	ROC75	Cre02.g083750.t1.1		1447851,1448134,1448801,1452643,1453538,1454020,1454524	1448076,1448176,1452467,1453265,1453645,1454163,1458155	Myb-like homeodomain transcription factor involved in circadian rhythms; in Matsuo et al. (2008), roc75 (rhythm of chloroplast) mutant lous maps here; they suggest the gene name ROC75
chr2	1447851	1458155	1448337	1455586	+	ROC75	Cre02.g083750.t2.1		1447851,1448544,1448801,1452643,1453538,1454020,1454524	1448370,1448582,1452467,1453265,1453645,1454163,1458155	Myb-like homeodomain transcription factor involved in circadian rhythms; in Matsuo et al. (2008), roc75 (rhythm of chloroplast) mutant lous maps here; they suggest the gene name ROC75
chr2	1458701	1462813	1458748	1461946	+	RHM2	Cre02.g083800.t1.2		1458701,1458951,1459117,1459317,1459731,1460355,1460861,1461238,1461825	1458883,1459028,1459206,1459482,1459876,1460505,1460952,1461362,1462813	NAD-dependent epimerase/dehydratase; belongs to a family of proteins which utilise NAD as a cofactor and use nucleotide-sugar substrates for a variety of chemical reactions
chr2	1458701	1462932	1458748	1461946	+	RHM2	Cre02.g083800.t2.1		1458701,1458951,1459117,1459317,1459731,1460355,1460861,1461238,1461825	1458883,1459028,1459206,1459482,1459876,1460505,1460952,1461362,1462932	NAD-dependent epimerase/dehydratase; belongs to a family of proteins which utilise NAD as a cofactor and use nucleotide-sugar substrates for a variety of chemical reactions
chr2	1462815	1468140	1463628	1468053	-	Cre02.g083850.t1.1	Cre02.g083850.t1.1		1467988,1467688,1467398,1467002,1466684,1466079,1465739,1465443,1464848,1464224,1462815	1468140,1467853,1467455,1467054,1466740,1466189,1465909,1465484,1464976,1464312,1463776	
chr2	1462935	1468140	1463628	1468053	-	Cre02.g083850.t2.1	Cre02.g083850.t2.1		1467988,1467688,1467398,1467002,1466684,1466079,1465739,1465443,1464848,1464224,1462935	1468140,1467853,1467455,1467054,1466740,1466189,1465909,1465484,1464976,1464312,1463776	
chr2	1468241	1478922	1468380	1478616	+	EXN5	Cre02.g083900.t1.1		1468241,1469714,1470140,1470495,1470983,1471308,1471700,1472841,1473265,1473614,1474025,1474928,1475500,1475841,1476280,1477203,1477421,1477829,1478235	1469234,1469930,1470220,1470623,1471110,1471401,1472204,1472968,1473363,1473832,1474745,1475326,1475633,1475925,1476979,1477275,1477569,1477940,1478922	
chr2	1468241	1478922	1468380	1478616	+	EXN5	Cre02.g083900.t2.1		1468241,1469714,1470140,1470495,1470983,1471308,1471700,1472841,1473265,1473614,1474025,1474928,1475841,1476280,1477203,1477421,1477829,1478235	1469234,1469930,1470220,1470623,1471110,1471401,1472204,1472968,1473363,1473832,1474745,1475205,1475925,1476979,1477275,1477569,1477940,1478922	
chr2	1478971	1481597	1478998	1481287	+	Cre02.g083935.t1.2	Cre02.g083935.t1.2		1478971,1479702	1479546,1481597	
chr2	1482232	1485980	1483173	1485932	-	PSRP3	Cre02.g083950.t1.1		1485896,1485702,1485093,1484169,1483759,1483448,1482232	1485980,1485779,1485386,1484300,1483890,1483548,1483297	Chloroplast small ribosomal subunit protein Plastid-Specific Ribosomal Protein 3. This is not the same as plastid ribosomal protein S3, which is encoded by the chloroplast rps3 gene in C. reinhardtii.
chr2	1486101	1487066	1486230	1486594	+	Cre02.g084000.t1.2	Cre02.g084000.t1.2		1486101	1487066	
chr2	1487471	1490972	1487579	1490418	+	SEC62	Cre02.g084050.t1.2		1487471,1487701,1488007,1488620,1489165,1489737,1490253	1487597,1487890,1488152,1488753,1489312,1489934,1490972	Expressed Protein. Similar to SEC62 component of the ER translocation apparatus.
chr2	1491021	1493491	1491041	1492182	+	Cre02.g084100.t1.2	Cre02.g084100.t1.2		1491021,1491758,1492062	1491546,1491897,1493491	
chr2	1493801	1508144	1494505	1507638	+	Cre02.g084150.t1.1	Cre02.g084150.t1.1		1493801,1497674,1498225,1499045,1499437,1499910,1500531,1500928,1504849,1505223,1505546,1506000	1497429,1498059,1498694,1499167,1499613,1500175,1500638,1504363,1505025,1505350,1505633,1508144	
chr2	1508311	1508852	1508372	1508538	+	Cre02.g084176.t1.1	Cre02.g084176.t1.1		1508311	1508852	
chr2	1508896	1510900	1509378	1510796	-	Cre02.g084200.t1.2	Cre02.g084200.t1.2		1510438,1510138,1509737,1508896	1510900,1510293,1509873,1509486	
chr2	1511370	1515190	1512248	1514605	-	Cre02.g084250.t1.2	Cre02.g084250.t1.2		1514845,1514506,1514059,1513362,1511370	1515190,1514665,1514375,1513722,1513238	
chr2	1511370	1515074	1512248	1514605	-	Cre02.g084250.t2.1	Cre02.g084250.t2.1		1514845,1514506,1514059,1513362,1511370	1515074,1514665,1514375,1513722,1513238	
chr2	1515329	1518866	1515860	1518565	-	COQ5C	Cre02.g084300.t1.2		1518349,1518002,1517679,1516951,1516655,1516168,1515329	1518866,1518157,1517779,1517084,1516716,1516267,1515967	UbiE/COQ5 methyltransferase family; ortholog of AT1G23360,  a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis
chr2	1519533	1522830	1520191	1522297	-	CGLD1	Cre02.g084350.t1.2		1522474,1522212,1521718,1520792,1519533	1522830,1522359,1521908,1520899,1520548	putative plastid protein
chr2	1523091	1526578	1523862	1525732	+	PFH9	Cre02.g084400.t1.2		1523091,1524042,1524371,1524853,1525669	1523920,1524112,1524679,1525482,1526578	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_391; contains C-terminal ShK domain; next to PFH10
chr2	1526631	1530141	1527185	1529276	+	PFH10	Cre02.g084450.t1.2		1526631,1527349,1527629,1528088,1528726,1529213	1527240,1527413,1527937,1528458,1528984,1530141	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_391; contains C-terminal ShK domain; next to PFH9
chr2	1530175	1534970	1530965	1534908	-	CGL134	Cre02.g084500.t1.1		1530175	1534970	Conserved in the Green Lineage; null-allele mutant was isolated (PMID 29743196)
chr2	1535025	1537560	1535586	1537463	-	Cre02.g084550.t1.2	Cre02.g084550.t1.2		1537199,1536913,1536507,1536116,1535799,1535025	1537560,1536970,1536799,1536233,1535878,1535667	
chr2	1537711	1540400	1537838	1540107	+	Cre02.g084600.t1.2	Cre02.g084600.t1.2		1537711,1538147,1538465,1538763,1539276,1539855,1540062	1537978,1538258,1538576,1538854,1539704,1539908,1540400	
chr2	1540405	1551380	1541038	1550858	-	Cre02.g084650.t1.2	Cre02.g084650.t1.2		1551081,1550747,1550355,1549948,1549599,1549198,1548760,1548488,1548145,1547789,1547481,1547162,1546776,1546546,1546280,1545985,1545510,1545221,1544672,1543986,1543632,1542688,1542228,1541895,1541531,1540405	1551380,1550938,1550486,1550092,1549690,1549354,1548941,1548602,1548296,1547924,1547602,1547232,1546958,1546599,1546406,1546116,1545641,1545290,1544832,1544445,1543795,1543360,1542367,1541972,1541623,1541290	
chr2	1552319	1556008	1552608	1555977	-	Cre02.g084700.t1.2	Cre02.g084700.t1.2		1555709,1555436,1555068,1554788,1554455,1554085,1553803,1553056,1552319	1556008,1555482,1555166,1554919,1554559,1554264,1553869,1553639,1552830	
chr2	1556056	1560738	1556440	1560673	-	Cre02.g084750.t1.1	Cre02.g084750.t1.1		1560331,1560019,1559777,1558637,1558010,1557270,1556056	1560738,1560245,1559851,1558733,1558439,1557851,1557096	
chr2	1556056	1560738	1556440	1560673	-	Cre02.g084750.t2.1	Cre02.g084750.t2.1		1560331,1560019,1559777,1558637,1558010,1557270,1556056	1560738,1560245,1559851,1558733,1558439,1557848,1557096	
chr2	1560859	1566716	1561072	1565993	+	SPO11A	Cre02.g084800.t1.2		1560859,1561291,1561495,1561755,1562087,1562451,1562823,1563208,1563586,1563909,1564147,1564878,1565244,1565506,1565897	1561144,1561352,1561534,1561880,1562166,1562559,1562895,1563326,1563665,1563971,1564246,1564982,1565291,1565574,1566716	Topoisomerase VI subunit A (type IIB), involved in meiosis, homolog of eukaryotic SPO11; ; Chlamydomonas has at two homologues.
chr2	1567470	1570798	1567892	1570733	-	Cre02.g084850.t1.1	Cre02.g084850.t1.1		1569884,1569066,1568687,1568433,1567470	1570798,1569725,1568823,1568601,1568237	
chr2	1570899	1572910	1571055	1572415	+	Cre02.g084873.t1.2	Cre02.g084873.t1.2		1570899,1571444,1572130	1571361,1571641,1572910	
chr2	1572913	1575668	1573208	1575551	-	Cre02.g084900.t1.2	Cre02.g084900.t1.2		1574678,1572913	1575668,1574330	
chr2	1575723	1579288	1576412	1579167	-	GUK1	Cre02.g084950.t1.2		1578852,1578432,1577792,1577433,1577059,1576715,1575723	1579288,1578556,1577930,1577486,1577169,1576781,1576570	Single domain guanylate kinase, erroneously called CYG71
chr2	1579579	1591054	1579946	1590700	+	Cre02.g085000.t1.1	Cre02.g085000.t1.1		1579579,1580250,1580823,1581405,1581691,1581934,1582417,1582857,1583221,1583623,1584021,1585189,1585681,1586138,1586570,1586982,1587305,1587897,1588565,1588974,1589447,1589960	1579999,1580538,1580879,1581476,1581761,1582105,1582557,1582980,1583342,1583748,1584212,1585370,1585843,1586332,1586728,1587089,1587679,1588011,1588797,1589278,1589772,1591054	
chr2	1591109	1599021	1591331	1597948	+	Cre02.g085050.t1.2	Cre02.g085050.t1.2		1591109,1591922,1592633,1594780,1595628,1596100,1596751,1597137,1597800	1591589,1592403,1594585,1595383,1595852,1596201,1596921,1597525,1599021	
chr2	1599023	1608658	1600679	1608490	-	CYG59	Cre02.g085100.t1.2		1608253,1608048,1607837,1607605,1607213,1606799,1606504,1606155,1605555,1605254,1604893,1604519,1604118,1603517,1603192,1602906,1602587,1602414,1602265,1602026,1601647,1601328,1600993,1599023	1608658,1608080,1607882,1607669,1607341,1606863,1606593,1606220,1605758,1605383,1604958,1604602,1604330,1603670,1603239,1603005,1602683,1602429,1602293,1602116,1601666,1601512,1601127,1600842	
chr2	1610239	1620454	1610357	1618844	+	Cre02.g085150.t1.1	Cre02.g085150.t1.1		1610239,1610455,1610660,1610904,1611326,1611552,1611909,1612281,1612725,1613264,1614574,1616084,1616734,1617229,1617459,1618093,1618471	1610382,1610510,1610796,1611089,1611341,1611577,1611980,1612299,1612961,1614388,1615759,1616565,1617054,1617328,1617885,1618239,1620454	
chr2	1610919	1620454	1611033	1618844	+	Cre02.g085150.t2.1	Cre02.g085150.t2.1		1610919,1611326,1611552,1611909,1612281,1612725,1613264,1614574,1616084,1616734,1617229,1617459,1618093,1618471	1611089,1611341,1611577,1611980,1612299,1612961,1614388,1615759,1616565,1617054,1617328,1617885,1618239,1620454	
chr2	1620694	1622938	1621384	1622748	-	Cre02.g085200.t1.1	Cre02.g085200.t1.1		1622704,1621794,1620694	1622938,1622507,1621544	
chr2	1623925	1631068	1623959	1629744	+	COP4	Cre02.g085257.t1.2		1623925,1624157,1624455,1624738,1624916,1625177,1625460,1625635,1625793,1626033,1626419,1626698,1626934,1627154,1627515,1627924,1628168,1628565,1629233,1629711	1624070,1624195,1624474,1624837,1624982,1625226,1625523,1625650,1625847,1626092,1626505,1626758,1627013,1627326,1627757,1628036,1628322,1628994,1629489,1631068	Also described as Chlamydomonas Sensory Opsin B and Channelrhodopsin 2; light-switched cation channel; contains N-terminal rhodopsin domain and C-terminal membrane-associated domain; involved in phototaxis; trafficking into the eyespot and flagella is IFT-mediated
chr2	1631083	1633958	1632259	1633449	-	Cre02.g085279.t1.1	Cre02.g085279.t1.1		1633407,1632435,1631083	1633958,1632746,1632265	
chr2	1634169	1635796	1635072	1635412	+	Cre02.g085300.t1.2	Cre02.g085300.t1.2		1634169,1634443,1635066	1634371,1634561,1635796	
chr2	1638376	1639548	1638694	1639360	-	Cre02.g085326.t1.1	Cre02.g085326.t1.1		1639269,1638376	1639548,1638846	
chr2	1639689	1642800	1639975	1642224	+	Cre02.g085350.t1.1	Cre02.g085350.t1.1		1639689,1639972,1640390,1641311,1641404	1639906,1640245,1640446,1641318,1642800	
chr2	1639689	1642800	1639736	1641350	+	Cre02.g085350.t2.1	Cre02.g085350.t2.1		1639689,1639972,1640390,1641311	1639906,1640245,1640446,1642800	
chr2	1643099	1646319	1643300	1644519	+	CSC1	Cre02.g085400.t1.1		1643099,1643648,1644154	1643303,1643987,1646319	function unknown; homologs in Gonium, not Volvox
chr2	1646979	1650920	1647665	1650164	+	CPX1	Cre02.g085450.t1.2		1646979,1647889,1648311,1648803,1649387,1649839	1647764,1647962,1648526,1649058,1649514,1650920	Coproporphyrinogen III oxidase, chloroplast precursor; GI:837299; CPO1; HEM13; HEM6 [PMID: 15849308]; Predicted chloroplast transit peptide 1-31
chr2	1651802	1653423	1652518	1653041	-	Cre02.g085500.t1.1	Cre02.g085500.t1.1		1651802	1653423	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr2	1653535	1656460	1653703	1654965	+	Cre02.g085550.t1.2	Cre02.g085550.t1.2		1653535,1654243,1654569,1654824	1654038,1654399,1654658,1656460	
chr2	1656475	1658528	1656901	1658420	-	Cre02.g085600.t1.2	Cre02.g085600.t1.2		1658321,1657995,1657620,1657144,1656475	1658528,1658141,1657799,1657396,1657017	
chr2	1658629	1662768	1658864	1662248	+	Cre02.g085650.t1.1	Cre02.g085650.t1.1		1658629,1659133,1659389,1659842,1660073,1660332,1660720,1661105,1661570,1662142	1658877,1659173,1659527,1659927,1660142,1660422,1660868,1661198,1661707,1662768	
chr2	1662833	1667748	1663445	1667605	-	Cre02.g085701.t1.1	Cre02.g085701.t1.1		1667478,1667148,1665845,1665163,1662833	1667748,1667263,1666969,1665662,1665012	
chr2	1668129	1675160	1668898	1675051	+	Cre02.g085750.t1.1	Cre02.g085750.t1.1		1668129,1669234,1669552,1669906,1670097,1670240,1670616,1671009,1671346,1671678,1671903,1672226,1672554,1672854,1673076,1673364,1673736,1674365,1674741,1675024	1669011,1669345,1669662,1669983,1670132,1670302,1670710,1671130,1671427,1671735,1672019,1672381,1672640,1672932,1673244,1673513,1674012,1674484,1674809,1675160	
chr2	1675209	1682455	1675257	1680411	+	Cre02.g085800.t1.1	Cre02.g085800.t1.1		1675209,1675470,1679882,1680303	1675271,1679705,1680122,1682455	
chr2	1683143	1691468	1683824	1691001	-	ARS6	Cre02.g085850.t1.1		1690875,1690555,1690375,1690072,1689778,1689504,1689278,1688811,1688467,1688233,1687990,1687655,1687312,1686272,1685935,1685306,1685043,1684622,1684373,1684144,1683143	1691468,1690580,1690424,1690144,1689821,1689565,1689359,1689111,1688605,1688301,1688028,1687807,1687429,1687005,1686141,1685715,1685156,1684720,1684468,1684263,1683885	Distantly related to nearby ARS8
chr2	1691633	1695282	1691791	1694606	+	IPP1	Cre02.g085900.t1.2		1691633,1692189,1692545,1692944,1693159,1693591,1693971,1694489	1691950,1692249,1692668,1693035,1693301,1693720,1694134,1695282	myo-Inositol monophosphatase
chr2	1695329	1697107	1695331	1696767	+	Cre02.g085950.t1.2	Cre02.g085950.t1.2		1695329,1695828,1696165,1696579	1695655,1695887,1696303,1697107	
chr2	1697269	1704650	1697746	1704327	+	ARS8	Cre02.g086000.t1.1		1697269,1698012,1698317,1698639,1698977,1699329,1699563,1699726,1699978,1700254,1700557,1700758,1701067,1701545,1702448,1702759,1703228,1703591,1704013,1704248	1697785,1698087,1698424,1698700,1699156,1699391,1699597,1699816,1700025,1700398,1700651,1700893,1701446,1702231,1702640,1703021,1703442,1703719,1704099,1704650	Distantly related to nearby ARS6
chr2	1704653	1709908	1705465	1709875	-	PUS4	Cre02.g086050.t1.1		1709718,1709314,1708997,1708690,1708321,1707815,1707420,1706802,1706399,1706046,1705740,1704653	1709908,1709469,1709115,1708875,1708412,1708115,1707542,1706924,1706467,1706140,1705874,1705547	tRNA pseudouridine synthase-like protein, with a putative mitochondrial targeting sequence
chr2	1709962	1714158	1710255	1714035	-	Cre02.g086076.t1.2	Cre02.g086076.t1.2		1713858,1713339,1712702,1712287,1711676,1711339,1710622,1709962	1714158,1713440,1713068,1712396,1711961,1711398,1711009,1710424	
chr2	1709962	1714158	1710255	1714035	-	Cre02.g086076.t2.1	Cre02.g086076.t2.1		1713858,1713339,1712702,1712287,1711676,1711339,1710622,1709962	1714158,1713440,1713068,1712396,1711961,1711398,1710976,1710424	
chr2	1714269	1716191	1714327	1715857	+	CGL40	Cre02.g086100.t1.2		1714269,1714527,1714777,1715183,1715488,1715785	1714413,1714602,1714861,1715262,1715520,1716191	
chr2	1716399	1721850	1716777	1721488	+	Cre02.g086150.t1.2	Cre02.g086150.t1.2		1716399,1717129,1717928,1718437,1718765,1719067,1719343,1720429	1716848,1717701,1718198,1718567,1718858,1719129,1720227,1721850	
chr2	1721853	1724346	1722740	1724072	-	Cre02.g086200.t1.2	Cre02.g086200.t1.2		1723255,1722981,1721853	1724346,1723061,1722796	
chr2	1724469	1727028	1724500	1726186	+	Cre02.g086250.t1.1	Cre02.g086250.t1.1		1724469,1725299	1725122,1727028	null-allele mutant was isolated (PMID 29743196)
chr2	1729528	1736822	1732155	1736212	-	Cre02.g086300.t1.1	Cre02.g086300.t1.1		1736510,1736108,1735697,1733592,1733303,1732628,1729528	1736822,1736258,1735934,1735525,1733456,1733144,1732463	
chr2	1729528	1736822	1732155	1736212	-	Cre02.g086300.t2.1	Cre02.g086300.t2.1		1736510,1736108,1735697,1733592,1733303,1732628,1729528	1736822,1736258,1735934,1735477,1733456,1733144,1732463	
chr2	1737973	1738934	1738608	1738900	+	Cre02.g086326.t1.1	Cre02.g086326.t1.1		1737973,1738385,1738608	1738324,1738449,1738934	
chr2	1738937	1743122	1739813	1742179	-	Cre02.g086350.t1.1	Cre02.g086350.t1.1		1742373,1742065,1741131,1740337,1738937	1743122,1742267,1741765,1740931,1739813	
chr2	1743283	1747102	1743602	1746206	+	Cre02.g086400.t1.2	Cre02.g086400.t1.2		1743283,1743732,1744023,1744414,1744699,1745080,1745342,1745566,1745875	1743638,1743815,1744224,1744511,1744860,1745241,1745428,1745675,1747102	
chr2	1747107	1748752	1747508	1748415	-	Cre02.g086428.t1.1	Cre02.g086428.t1.1		1748399,1747107	1748752,1747912	
chr2	1749124	1752942	1750575	1752881	-	Cre02.g086456.t1.2	Cre02.g086456.t1.2		1752679,1752442,1751883,1751681,1751413,1751149,1749124	1752942,1752462,1751918,1751731,1751488,1751308,1750824	
chr2	1751377	1752933	1751455	1752881	-	Cre02.g086456.t3.1	Cre02.g086456.t3.1		1752679,1752442,1751883,1751681,1751377	1752933,1752462,1751918,1751731,1751586	
chr2	1749124	1751322	1750575	1751296	-	Cre02.g086456.t2.1	Cre02.g086456.t2.1		1751149,1749124	1751322,1750824	
chr2	1753757	1757022	1754843	1756906	-	PGM10	Cre02.g086500.t1.2		1756753,1756513,1756189,1755937,1755575,1755277,1753757	1757022,1756604,1756273,1756041,1755722,1755358,1755036	
chr2	1757153	1761394	1757243	1761000	+	CGL122	Cre02.g086550.t1.1		1757153,1757614,1758340,1758713,1759016,1759387,1759654,1760193,1760371,1760597,1760839	1757324,1758038,1758526,1758833,1759143,1759480,1760050,1760226,1760384,1760709,1761394	Conserved in the Green Lineage
chr2	1761399	1764942	1761894	1764807	-	Cre02.g086600.t1.2	Cre02.g086600.t1.2		1764469,1764045,1763607,1763108,1762773,1762216,1761399	1764942,1764132,1763736,1763418,1762877,1762586,1762024	
chr2	1765053	1773884	1765291	1773351	+	SMC2	Cre02.g086650.t1.2		1765053,1765600,1765866,1766060,1766280,1766631,1766995,1767388,1767712,1768163,1768437,1768820,1769172,1769492,1769732,1770063,1770431,1770850,1771110,1771401,1771873,1772164,1772484,1772798,1773156	1765459,1765749,1765921,1766141,1766414,1766770,1767189,1767599,1767959,1768277,1768576,1768906,1769321,1769579,1769891,1770243,1770653,1770941,1771219,1771605,1771965,1772311,1772592,1772927,1773884	Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. Forms heterodimers with SMC4. ts-lethal mutations block in S/M (PMID 25336509)
chr2	1774189	1779482	1774574	1779395	-	COG7	Cre02.g086700.t1.2		1778878,1778461,1778077,1777711,1777332,1776964,1776647,1776319,1775796,1775358,1775014,1774189	1779482,1778593,1778122,1777899,1777481,1777163,1776734,1776435,1776149,1775549,1775196,1774817	Expressed protein. Similar to COG7, component of oligomeric golgi complex 7, involved in vesicle tethering and other Golgi functions
chr2	1779603	1783448	1779712	1782431	+	Cre02.g086750.t1.1	Cre02.g086750.t1.1		1779603,1779923,1780105,1780517,1781015,1781363,1781667	1779837,1779986,1780192,1780629,1781091,1781481,1783448	
chr2	1779603	1783448	1779712	1782431	+	Cre02.g086750.t2.1	Cre02.g086750.t2.1		1779603,1779923,1780105,1780517,1781015,1781363,1781670	1779837,1779986,1780192,1780629,1781091,1781481,1783448	
chr2	1789333	1793177	1789673	1792243	+	Cre02.g086800.t1.2	Cre02.g086800.t1.2		1789333,1791541,1792003	1791353,1791750,1793177	
chr2	1793609	1796125	1794109	1796038	-	Cre02.g086850.t1.1	Cre02.g086850.t1.1		1795891,1795697,1795316,1794511,1793609	1796125,1795801,1795516,1795071,1794160	
chr2	1796263	1808518	1796456	1807386	+	Cre02.g086887.t1.1	Cre02.g086887.t1.1		1796263,1796547,1796792,1797017,1797187,1797648,1799872,1800209,1802367,1803144,1803499,1803797,1804863,1805203,1805611,1806083,1806641	1796475,1796716,1796887,1797094,1797520,1799716,1800062,1800774,1802957,1803322,1803595,1804737,1804985,1805370,1805901,1806408,1808518	
chr2	1796263	1802092	1796456	1801462	+	Cre02.g086887.t2.1	Cre02.g086887.t2.1		1796263,1796547,1796792,1797017,1797187,1797648,1799872,1800209,1801445	1796475,1796716,1796887,1797094,1797520,1799716,1800062,1800774,1802092	
chr2	1802143	1808518	1802377	1807386	+	Cre02.g086887.t3.1	Cre02.g086887.t3.1		1802143,1803144,1803499,1803797,1804863,1805203,1805611,1806083,1806641	1802957,1803322,1803595,1804737,1804985,1805370,1805901,1806408,1808518	
chr2	1809063	1817104	1809283	1816892	+	Cre02.g087000.t1.1	Cre02.g087000.t1.1		1809063,1809733,1810905,1811494,1813914,1814159	1809589,1810671,1811309,1813752,1814000,1817104	
chr2	1817107	1823202	1818055	1821780	-	Cre02.g087050.t1.1	Cre02.g087050.t1.1		1822718,1822354,1822002,1821422,1821066,1820709,1820285,1819907,1819415,1818958,1818570,1817107	1823202,1822451,1822160,1821790,1821148,1820873,1820528,1820052,1819602,1819120,1818683,1818334	
chr2	1823257	1828762	1824341	1828693	-	Cre02.g087100.t1.2	Cre02.g087100.t1.2		1828643,1828292,1827741,1827507,1827129,1826755,1826320,1825951,1825613,1825296,1824918,1823257	1828762,1828422,1828121,1827583,1827293,1826858,1826468,1826084,1825800,1825458,1825025,1824659	
chr2	1828818	1834832	1829786	1834185	-	Cre02.g087150.t1.2	Cre02.g087150.t1.2		1834129,1833840,1833212,1832809,1832334,1831984,1831500,1831020,1830642,1830275,1828818	1834832,1833943,1833487,1832882,1832498,1832170,1831663,1831207,1830804,1830457,1829963	
chr2	1835033	1842501	1835847	1841683	+	Cre02.g087200.t1.1	Cre02.g087200.t1.1		1835033,1835721,1837269,1837540,1837789	1835348,1837137,1837385,1837668,1842501	
chr2	1844442	1846620	1845378	1846469	-	Cre02.g087250.t1.1	Cre02.g087250.t1.1		1846304,1845954,1845665,1844442	1846620,1846032,1845846,1845453	
chr2	1846733	1851045	1847064	1850058	+	Cre02.g087300.t1.1	Cre02.g087300.t1.1		1846733,1847349,1847631,1847903,1848342,1848602,1848826,1849155,1849373,1849644,1849968	1847149,1847442,1847673,1847998,1848445,1848647,1848945,1849242,1849483,1849765,1851045	
chr2	1851093	1853454	1851923	1852950	+	Cre02.g087324.t1.1	Cre02.g087324.t1.1		1851093,1851436,1852149,1852543,1852849	1851287,1851957,1852350,1852667,1853454	
chr2	1854893	1858694	1855099	1857615	+	Cre02.g087350.t1.1	Cre02.g087350.t1.1		1854893,1855296,1855537	1855195,1855389,1858694	
chr2	1858767	1861772	1859699	1861624	-	Cre02.g087400.t1.2	Cre02.g087400.t1.2		1861561,1861276,1858767	1861772,1861318,1861120	
chr2	1861831	1866442	1862397	1866156	-	Cre02.g087450.t1.2	Cre02.g087450.t1.2		1866118,1865802,1865426,1865062,1864642,1864337,1864071,1863633,1863129,1862676,1861831	1866442,1866008,1865501,1865167,1864730,1864429,1864172,1863782,1863209,1862762,1862460	
chr2	1866536	1868211	1867266	1868060	-	Cre02.g087500.t1.1	Cre02.g087500.t1.1		1868003,1867759,1866536	1868211,1867813,1867535	
chr2	1868307	1880602	1868599	1880297	-	Cre02.g087551.t1.1	Cre02.g087551.t1.1		1880144,1879702,1879051,1878535,1877609,1877238,1876878,1876504,1876134,1875584,1875077,1874671,1874209,1873924,1873641,1873072,1872597,1872306,1868307	1880602,1879896,1879252,1878775,1877693,1877372,1876976,1876570,1876327,1875895,1875297,1874925,1874371,1873983,1873740,1873421,1872785,1872382,1872140	
chr2	1881027	1891232	1882534	1890675	-	Cre02.g087600.t1.1	Cre02.g087600.t1.1		1890605,1889322,1888910,1888573,1888038,1887679,1887171,1886532,1886118,1885888,1885379,1884955,1884576,1884175,1883702,1883365,1881027	1891232,1890130,1889003,1888706,1888104,1887787,1887417,1886751,1886319,1885948,1885702,1885137,1884640,1884259,1883883,1883434,1883101	SNF2-related helicase.  ChromoDB CHR342
chr2	1891477	1896432	1891672	1896351	-	Cre02.g087633.t1.1	Cre02.g087633.t1.1		1896041,1894904,1894416,1894077,1893666,1893369,1892731,1892342,1892087,1891477	1896432,1895560,1894622,1894199,1893782,1893505,1893050,1892473,1892213,1891939	
chr2	1896563	1899234	1896701	1899170	+	Cre02.g087666.t1.1	Cre02.g087666.t1.1		1896563,1897186,1897796,1898709	1896868,1897550,1898455,1899234	
chr2	1899262	1903342	1899790	1903021	-	APX1	Cre02.g087700.t1.2		1902870,1902561,1902305,1902043,1901739,1901449,1901237,1900857,1900223,1899262	1903342,1902616,1902386,1902143,1901826,1901534,1901300,1901014,1900296,1899914	L-ascorbate peroxidase, possibly localized to plastid
chr2	1903667	1912822	1905240	1912336	-	Cre02.g087750.t1.2	Cre02.g087750.t1.2		1912297,1911880,1910306,1909932,1909571,1909192,1908681,1907887,1907533,1907118,1906780,1906452,1906186,1905977,1905801,1905616,1903667	1912822,1912028,1910345,1910026,1909680,1909292,1908968,1908508,1907654,1907288,1906881,1906527,1906325,1906006,1905825,1905654,1905458	
chr2	1914357	1922282	1915863	1921597	-	PTK10	Cre02.g087800.t1.1		1921731,1921546,1921212,1920796,1920420,1919976,1919512,1918663,1918378,1918161,1917936,1917670,1917344,1917111,1916871,1916535,1916189,1914357	1922282,1921599,1921326,1920973,1920529,1920076,1919775,1919284,1918499,1918280,1918037,1917745,1917483,1917140,1916895,1916559,1916315,1915950	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329); closely linked to PTK19
chr2	1923378	1931983	1924892	1931410	-	PTK19	Cre02.g087850.t1.1		1931116,1930818,1930461,1930083,1929653,1929241,1928692,1927941,1927656,1927446,1927211,1926946,1926636,1926402,1926228,1925937,1925610,1923378	1931983,1930871,1930575,1930263,1929765,1929353,1928961,1928466,1927777,1927565,1927312,1927021,1926775,1926431,1926252,1925961,1925736,1924979	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329); closely linked to PTK10
chr2	1932098	1940693	1934085	1940335	-	Cre02.g087900.t1.1	Cre02.g087900.t1.1		1940005,1939380,1938896,1938501,1938257,1937788,1936538,1936203,1936019,1935704,1935492,1935226,1934976,1934839,1934579,1932098	1940693,1939669,1939006,1938591,1938298,1938070,1937425,1936324,1936099,1935805,1935567,1935365,1935005,1934863,1934617,1934342	
chr2	1941058	1952323	1941911	1952279	-	TSM1	Cre02.g087950.t1.2		1952068,1951593,1950656,1950173,1949696,1949248,1948695,1948186,1947551,1947318,1946764,1946354,1945967,1945552,1945274,1944741,1944386,1944004,1943447,1942933,1942341,1941058	1952323,1951765,1950757,1950350,1949802,1949396,1948815,1948338,1947703,1947410,1946932,1946436,1946049,1945654,1945369,1944804,1944462,1944161,1943723,1943082,1942454,1942028	
chr2	1952421	1957107	1952485	1956640	+	PHB1	Cre02.g088000.t1.2		1952421,1952807,1953020,1953657,1954171,1954605,1955137,1955438,1956550	1952659,1952923,1953130,1953716,1954335,1954658,1955208,1955518,1957107	POC17, found in basal body proteome [PMID: 15964273], but possibly mitochondrial
chr2	1957126	1960533	1958064	1960426	-	RPP30	Cre02.g088050.t1.2		1960286,1959779,1959493,1959158,1958860,1958412,1957126	1960533,1960118,1959606,1959247,1958964,1958525,1958220	involved in 5' processing of tRNA; homologous to human RPP30 subunit (PubMed: 10024167)
chr2	1960684	1964920	1960925	1964499	+	Cre02.g088100.t1.2	Cre02.g088100.t1.2		1960684,1961388,1961793,1962251,1962911,1963377,1963796	1961036,1961456,1961889,1962477,1963105,1963624,1964920	
chr2	1965239	1968723	1967340	1967947	-	Cre02.g088151.t1.1	Cre02.g088151.t1.1		1967932,1967838,1965239	1968723,1967889,1967486	
chr2	1973824	1979205	1973863	1977956	+	RB60	Cre02.g088200.t1.2		1973824,1974145,1974265,1974499,1974942,1975352,1975851,1976299,1976723,1977076,1977443,1977851	1974078,1974175,1974336,1974614,1975071,1975490,1976041,1976430,1976887,1977210,1977610,1979205	Protein disulfide isomerase 1 (CrPDI1 [PMID: 16143836]. Located in the chloroplast and the endoplasmic reticulum. The Rb60 protein is part of a complex involved in the control of psbA mRNA translation by light [PMID: 1721866, PMID: 7798310, PMID: 8668172, PMID: 7992056, PMID: 9482869, PMID: 9395399, PMID: 10648596, PMID: 11087734, PMID: 11593046, PMID: 11976967, PMID: 12407204, PMID: 15837918, PMID: 16497834]. Potential thioredoxin target [PMID: 15123830]
chr2	1979594	1985655	1980308	1985095	+	MCT2	Cre02.g088250.t1.2		1979594,1980855,1981142,1981632,1982079,1982459,1982727,1983174,1983435,1983877,1984211,1984508,1984801	1980425,1980935,1981267,1981781,1982207,1982528,1983028,1983288,1983682,1984059,1984300,1984564,1985655	
chr2	1985658	1989983	1985977	1989662	-	CPK6	Cre02.g088300.t1.1		1989907,1989464,1989221,1989088,1988139,1987762,1987257,1986573,1985658	1989983,1989720,1989295,1989117,1988316,1987893,1987432,1986884,1986259	
chr2	1990134	1996847	1990253	1995400	+	Cre02.g088350.t1.1	Cre02.g088350.t1.1		1990134,1991222,1991721,1992148,1992664,1993087	1990973,1991380,1991847,1992309,1992830,1996847	
chr2	1996894	2001625	1997348	2000814	+	DEG1	Cre02.g088400.t1.2		1996894,1997104,1997825,1998121,1998390,1998892,1999210,1999445,1999878,2000229,2000703	1996974,1997624,1997884,1998168,1998659,1998996,1999243,1999599,1999944,2000401,2001625	serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At3g27925 (DegP1) and to degP5, localized in thylakoid membrane, lumen side [PMID: 15137941]; probably results from a recent duplication of DEG1 gene which yielded also divergent DEG1B; one C-terminal PDZ domain, probably involved in substrate recognition and protease activation [PMID: 15137941], no DegP C-term domain (NB: v5.5 gene model is truncated at N-term)
chr2	1996894	2001625	1997348	2000814	+	DEG1	Cre02.g088400.t2.1		1996894,1997104,1997825,1998121,1998390,1998892,1999210,1999445,1999878,2000232,2000703	1996974,1997624,1997884,1998168,1998659,1998996,1999243,1999599,1999944,2000401,2001625	serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At3g27925 (DegP1) and to degP5, localized in thylakoid membrane, lumen side [PMID: 15137941]; probably results from a recent duplication of DEG1 gene which yielded also divergent DEG1B; one C-terminal PDZ domain, probably involved in substrate recognition and protease activation [PMID: 15137941], no DegP C-term domain (NB: v5.5 gene model is truncated at N-term)
chr2	2001630	2012145	2002045	2011942	-	CPLD29	Cre02.g088450.t1.1		2011827,2010768,2010315,2010023,2009759,2009008,2008538,2007791,2006128,2005638,2003264,2002649,2001630	2012145,2011459,2010431,2010102,2009800,2009419,2008663,2008296,2007576,2005797,2005228,2003029,2002357	PX DOMAIN-CONTAINING PROTEIN KINASE-LIKE PROTEIN
chr2	2012390	2018015	2013062	2017870	-	CPLD29	Cre02.g088500.t1.1		2017699,2017333,2016958,2016676,2016269,2015870,2015574,2015191,2014998,2014434,2013733,2013422,2012390	2018015,2017462,2017067,2016758,2016410,2015978,2015641,2015261,2015028,2014562,2014020,2013498,2013150	
chr2	2021236	2024447	2021443	2023211	+	Cre02.g088551.t1.1	Cre02.g088551.t1.1		2021236,2021773	2021550,2024447	
chr2	2024458	2032345	2025314	2032133	-	ACLB1	Cre02.g088600.t1.2		2032036,2031854,2031110,2030864,2030399,2030040,2029665,2029270,2028844,2028086,2027697,2027314,2026863,2026526,2026105,2025792,2024458	2032345,2031940,2031128,2030929,2030558,2030199,2029729,2029383,2029007,2028191,2027790,2027393,2027020,2026682,2026179,2025892,2025438	ATP Citrate Lyase (ACL), subunit B (EC 2.3.3.8); ATP-citrate synthase, subunit B; location uncertain, but likely to be cytosol; Similar to Arabidopsis ATP citrate lyase subunit B (GenBank NP_187317), which is similar to the carboxy half of the human ACL [PMID: 12376641]. ACL is responsible for generating acetyl-CoA in the cytosol of Arabidopsis. ACLA1 represents the equivalent of the amino half of the human ACL.
chr2	2032476	2037305	2032504	2037104	+	Cre02.g088650.t1.2	Cre02.g088650.t1.2		2032476,2034063,2034826,2035206,2036003,2036559	2033870,2034549,2034995,2035597,2036225,2037305	
chr2	2037406	2042681	2037513	2040519	+	Cre02.g088651.t1.2	Cre02.g088651.t1.2		2037406,2037712,2038376	2037608,2037864,2042681	
chr2	2042840	2046185	2043495	2046084	-	Cre02.g088700.t1.2	Cre02.g088700.t1.2		2045999,2045627,2045342,2044960,2044420,2042840	2046185,2045921,2045381,2045037,2044621,2044220	
chr2	2046410	2073625	2047119	2073537	-	ATR2	Cre02.g088750.t1.2		2073488,2073014,2072409,2072094,2070965,2070428,2070109,2069853,2069507,2069054,2068629,2067730,2067112,2065344,2064823,2064382,2064069,2063575,2063030,2062472,2062013,2061762,2061375,2060969,2060046,2059710,2059354,2058804,2058385,2057700,2057395,2056982,2056332,2055782,2055349,2054996,2054620,2054165,2053565,2052901,2052231,2051733,2051278,2050948,2050662,2050011,2049264,2048634,2048286,2047768,2046410	2073625,2073390,2072550,2072254,2071831,2070649,2070189,2069981,2069704,2069293,2068790,2068449,2067492,2066981,2065123,2064620,2064182,2063916,2063294,2062860,2062171,2061888,2061583,2061118,2060765,2059847,2059569,2059214,2058567,2057966,2057525,2057165,2056764,2056222,2055560,2055153,2054797,2054278,2053861,2053134,2052503,2051981,2051508,2051083,2050786,2050421,2049659,2048937,2048383,2047996,2047403	TRRAP. C-terminus contains the FAT (IPR3151), PI3Kc (IPR43) and FATC (IPRIPR3152) domains. The human ataxia-telangiectasia mutated, ATM, protein contains the ARM, FAT, KI3Kc and FATC domains).  May be phosphatidylinositol 3-kinase or 3-oxoadipate
chr2	2073767	2076405	2074120	2075751	+	Cre02.g088800.t1.2	Cre02.g088800.t1.2		2073767,2074333,2074611,2074881,2075532	2074153,2074503,2074683,2075293,2076405	
chr2	2076702	2078409	2076722	2077979	+	RFS2	Cre02.g088850.t1.2		2076702,2076951,2077208,2077447,2077633,2077862	2076867,2077141,2077303,2077525,2077679,2078409	Encodes for 6,7-dimethyl-8-ribityllumazine (riboflavin) synthase
chr2	2078516	2080853	2078547	2080036	+	PRPL1	Cre02.g088900.t1.2		2078516,2079508,2079901	2079180,2079633,2080853	imported to chloroplast; Chloroplast large ribosomal subunit protein L1
chr2	2080910	2083065	2081397	2082998	-	Cre02.g088950.t1.2	Cre02.g088950.t1.2		2082828,2082390,2081906,2080910	2083065,2082628,2082204,2081712	
chr2	2083120	2083675	2083145	2083628	-	Cre02.g089000.t1.1	Cre02.g089000.t1.1		2083565,2083424,2083120	2083675,2083473,2083290	null-allele mutant was isolated (PMID 29743196)
chr2	2083816	2091646	2083989	2090455	+	Cre02.g089050.t1.1	Cre02.g089050.t1.1		2083816,2084365,2084643,2085028,2085284,2085920,2086784,2086997,2087339,2087596,2087966,2088369,2088672,2089017,2089354,2089809,2090122	2084211,2084484,2084720,2085117,2085622,2086684,2086843,2087164,2087423,2087789,2088254,2088466,2088767,2089192,2089678,2089898,2091646	
chr2	2092006	2095328	2092109	2094957	+	COPD1	Cre02.g089100.t1.2		2092006,2092224,2092424,2093734,2094226,2094690	2092152,2092366,2093131,2093949,2094384,2095328	Expressed Protein. Delta-COP. Subunit of COP-I protein complex.
chr2	2095330	2101275	2095815	2101151	-	Cre02.g089150.t1.1	Cre02.g089150.t1.1		2101128,2101004,2100824,2100479,2100068,2099629,2098911,2098589,2098264,2097896,2097612,2096896,2096550,2096048,2095330	2101275,2101063,2100930,2100564,2100110,2099765,2099384,2098729,2098436,2098040,2097731,2097352,2096764,2096213,2095877	
chr2	2101376	2109817	2101419	2109223	+	HLM4	Cre02.g089200.t1.2		2101376,2101866,2102461,2102791,2103249,2103651,2104078,2104824,2105168,2105810,2106260,2106610,2106855,2108257,2108588,2108841,2109121	2101557,2102044,2102590,2103027,2103334,2103780,2104179,2104898,2105313,2105930,2106400,2106669,2107914,2108355,2108623,2108872,2109817	Protein contains a SET domain with similarity to Arabidopsis thaliana SUVH4/KYP/SET33 (At5g13960); published Chlamydomonas cDNA (AY702654); [PMID: 16100335]; null-allele mutant was isolated (PMID 29743196)
chr2	2110210	2133735	2111270	2133599	-	Cre02.g089237.t1.1	Cre02.g089237.t1.1		2133581,2133192,2132868,2132264,2131525,2130518,2129730,2129342,2128539,2127920,2127420,2126988,2126383,2125876,2125342,2124366,2122143,2120292,2118281,2117872,2116849,2114177,2112198,2111757,2110210	2133735,2133319,2133016,2132395,2132015,2131002,2129961,2129446,2128858,2128152,2127643,2127092,2126470,2126090,2125428,2124800,2122601,2120853,2118397,2117984,2117118,2114545,2113308,2111852,2111419	
chr2	2133836	2143858	2134077	2143361	+	Cre02.g089274.t1.1	Cre02.g089274.t1.1		2133836,2134652,2135179,2135644,2136132,2136646,2137169,2137375,2137717,2138043,2139632,2143193	2134163,2134771,2135272,2135925,2136290,2136759,2137209,2137479,2137783,2138514,2140470,2143858	
chr2	2143870	2148585	2144171	2148246	-	Cre02.g089311.t1.1	Cre02.g089311.t1.1		2148059,2147657,2147182,2146855,2146427,2145204,2143870	2148585,2147794,2147351,2146883,2146517,2145341,2145014	May contain additional coding sequence in intronic N-island PMID: 27175017
chr2	2148856	2157018	2148954	2156771	+	Cre02.g089350.t1.1	Cre02.g089350.t1.1		2148856,2149107,2150707,2152786,2155467,2155991	2148990,2150592,2152523,2154987,2155730,2157018	
chr2	2157080	2162325	2158005	2161934	-	HRP2	Cre02.g089400.t1.1		2161870,2161206,2160824,2160407,2158835,2158504,2157080	2162325,2161336,2160921,2160633,2160049,2158604,2158005	cell wall protein; contains (hydroxy)proline-rich (HR) domain with (SP)n repeats; closely linked to HRP5
chr2	2163000	2166595	2163556	2166401	-	HRP5	Cre02.g089450.t1.2		2166337,2166008,2165545,2165144,2164633,2164370,2164003,2163000	2166595,2166138,2165642,2165370,2164905,2164465,2164053,2163759	cell wall protein; contains (hydroxy)proline-rich (HR) domain with (SP)n repeats; closely linked to HRP2
chr2	2166902	2169985	2167507	2169727	-	Cre02.g089500.t1.2	Cre02.g089500.t1.2		2169663,2169265,2168689,2168475,2168096,2167765,2166902	2169985,2169496,2169089,2168543,2168323,2167947,2167623	
chr2	2170854	2174980	2171552	2174888	-	Cre02.g089550.t1.2	Cre02.g089550.t1.2		2174821,2174514,2174265,2173842,2173499,2173199,2170854	2174980,2174647,2174356,2174065,2173567,2173330,2172979	
chr2	2170854	2175316	2171552	2174888	-	Cre02.g089550.t2.1	Cre02.g089550.t2.1		2174821,2174514,2174265,2173842,2173499,2173199,2170854	2175316,2174647,2174356,2174065,2173567,2173330,2172979	
chr2	2175368	2178446	2176214	2178413	-	XPD2	Cre02.g089600.t1.1		2177751,2175368	2178446,2177451	DEAH box helicase, Rad3-like
chr2	2178501	2191186	2178773	2190772	-	Cre02.g089608.t1.2	Cre02.g089608.t1.2		2190658,2190296,2189901,2189062,2188531,2188234,2187870,2187367,2186945,2186662,2186339,2185948,2185467,2185139,2184609,2184095,2183729,2183250,2182701,2182318,2181897,2180301,2178501	2191186,2190334,2189990,2189387,2188659,2188367,2187997,2187440,2187017,2186724,2186468,2186071,2185655,2185274,2184692,2184212,2183895,2183336,2182814,2182400,2182005,2181637,2180034	
chr2	2191561	2197826	2192274	2197361	-	Cre02.g089650.t1.1	Cre02.g089650.t1.1		2197224,2196958,2195244,2191561	2197826,2197082,2196652,2194905	
chr2	2198395	2206416	2199298	2206316	-	Cre02.g089700.t1.2	Cre02.g089700.t1.2		2205101,2204677,2204059,2201892,2201530,2201128,2200733,2200237,2199861,2198395	2206416,2204856,2204453,2203711,2201588,2201201,2200838,2200450,2200057,2199445	
chr2	2206573	2213146	2207310	2212855	-	Cre02.g089750.t1.2	Cre02.g089750.t1.2		2212852,2212460,2209986,2206573	2213146,2212672,2212201,2209717	
chr2	2213197	2216676	2213984	2216426	-	Cre02.g089800.t1.1	Cre02.g089800.t1.1		2216297,2214728,2213197	2216676,2216125,2214509	
chr2	2217121	2222686	2218557	2222561	-	Cre02.g089850.t1.2	Cre02.g089850.t1.2		2222207,2221866,2221479,2220978,2220409,2219964,2219672,2219416,2217121	2222686,2221927,2221533,2221131,2220591,2220073,2219859,2219456,2218826	null-allele mutant was isolated (PMID 29743196)
chr2	2217121	2222686	2218557	2222561	-	Cre02.g089850.t2.1	Cre02.g089850.t2.1		2222207,2221866,2221479,2220978,2220409,2219964,2219672,2219416,2217121	2222686,2221927,2221533,2221131,2220591,2220073,2219859,2219456,2218823	null-allele mutant was isolated (PMID 29743196)
chr2	2222899	2226326	2223580	2226224	-	SCAMP5	Cre02.g089900.t1.2		2225906,2225701,2225454,2225178,2224731,2224120,2222899	2226326,2225819,2225541,2225271,2224880,2224288,2223671	SCAMP family protein, contains Pfam domain. Homologous to Arabidopsis At1g32050.1; null-allele mutant was isolated (PMID 29743196)
chr2	2227471	2228966	2227808	2228816	-	IFT20	Cre02.g089950.t1.2		2228780,2228653,2228492,2228358,2228190,2227471	2228966,2228709,2228572,2228426,2228254,2227908	Component of peripheral subcomplex of IFT-B particle
chr2	2230657	2247688	2230884	2245035	+	Cre02.g090000.t1.1	Cre02.g090000.t1.1		2230657,2231286,2231521,2232142,2232382,2233073,2233488,2233921,2234178,2234615,2235166,2235648,2236117,2236561,2237055,2237333,2237593,2237869,2240592,2241225,2241718,2242202,2242530,2244411,2244639	2231021,2231385,2231616,2232216,2232489,2233137,2233627,2234037,2234317,2234764,2235334,2235822,2236303,2236770,2237174,2237398,2237669,2240307,2240724,2241374,2241891,2242371,2244129,2244446,2247688	
chr2	2247737	2252094	2247977	2251228	+	FAP170	Cre02.g090050.t1.1		2247737,2249520,2249836,2250784	2249273,2249637,2250548,2252094	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr2	2252101	2256026	2252419	2255974	-	Cre02.g090100.t1.2	Cre02.g090100.t1.2		2255825,2255582,2255251,2254655,2254323,2253750,2253228,2252101	2256026,2255675,2255345,2254867,2254420,2253882,2253292,2252925	
chr2	2256127	2259108	2256263	2259004	+	PAN3	Cre02.g090150.t1.2		2256127,2256723,2257106,2257600,2258141,2258718,2258991	2256374,2256766,2257196,2257672,2258270,2258897,2259108	Pantoate--beta-alanine ligase (AMP-forming), the last enzyme in the pantothenate biosynthesis pathway
chr2	2259910	2261136	2260083	2261099	-	Cre02.g090200.t1.1	Cre02.g090200.t1.1		2261003,2260581,2260451,2259910	2261136,2260777,2260491,2260307	
chr2	2261607	2268248	2261714	2267510	+	Cre02.g090276.t1.1	Cre02.g090276.t1.1		2261607,2262476,2262981,2263573,2263937,2266610	2262200,2262667,2263103,2263653,2264197,2268248	
chr2	2268877	2273966	2269317	2273816	-	Cre02.g090350.t1.1	Cre02.g090350.t1.1		2273727,2273527,2273204,2272961,2272623,2272269,2271012,2268877	2273966,2273629,2273422,2273059,2272776,2272520,2272032,2270866	
chr2	2274087	2277078	2274249	2276757	+	Cre02.g090400.t1.2	Cre02.g090400.t1.2		2274087,2274393,2274724,2275029,2275716,2276206,2276581	2274327,2274491,2274802,2275366,2275991,2276311,2277078	
chr2	2277081	2285066	2277317	2284929	-	Cre02.g090451.t1.1	Cre02.g090451.t1.1		2284905,2284504,2284011,2283335,2282983,2282287,2281558,2281064,2280306,2279720,2279217,2278645,2278166,2277081	2285066,2284749,2284187,2283808,2283099,2282404,2282030,2281240,2280651,2279889,2279321,2278758,2278336,2277692	
chr2	2285187	2291928	2285302	2291226	+	HEL10	Cre02.g090500.t1.1		2285187,2286386,2287448,2288496,2288898	2285704,2287114,2287597,2288657,2291928	
chr2	2293817	2295288	2294183	2295051	+	Cre02.g090526.t1.1	Cre02.g090526.t1.1		2293817,2295042	2294402,2295288	
chr2	2295516	2304556	2296288	2304493	-	ARS9	Cre02.g090550.t1.1		2304327,2304127,2303791,2303498,2303107,2302462,2302151,2301799,2301318,2300861,2300405,2299771,2299401,2299004,2297256,2295516	2304556,2304205,2303828,2303599,2303246,2302554,2302188,2301957,2301409,2300954,2300456,2299852,2299674,2299123,2298693,2296969	
chr2	2304657	2309018	2304828	2308836	+	Cre02.g090600.t1.2	Cre02.g090600.t1.2		2304657,2305529,2306247,2306845,2307381,2307937,2308292	2304984,2305645,2306549,2306944,2307577,2308043,2309018	
chr2	2309067	2319113	2309215	2318755	+	SEC20	Cre02.g090650.t1.1		2309067,2309561,2309803,2310140,2310661,2311007,2311379,2312608	2309457,2309620,2309872,2310305,2310775,2311148,2312419,2319113	Hypothetical Conserved Protein. Similar to Sec20 Qb-SNARE, involved in Golgi-to-ER trafficking
chr2	2319167	2322395	2319872	2321825	+	Cre02.g090689.t1.2	Cre02.g090689.t1.2		2319167,2319852,2320889	2319418,2320526,2322395	
chr2	2322421	2334836	2322575	2334677	-	MAPKKK8	Cre02.g090700.t1.1		2334620,2334015,2333678,2332926,2331703,2331378,2330770,2325898,2325452,2325124,2324794,2324318,2323809,2323546,2323215,2322421	2334836,2334188,2333793,2333566,2332766,2331471,2331057,2330534,2325526,2325204,2324886,2324384,2323940,2323598,2323283,2322854	Mitogen Activated Protein Kinase Kinase Kinase Homolog 8, putative
chr2	2334947	2340528	2335167	2339643	+	Cre02.g090750.t1.2	Cre02.g090750.t1.2		2334947,2335356,2335684,2336223,2336824,2339004	2335276,2335540,2336073,2336564,2337402,2340528	
chr2	2340618	2348785	2340728	2347972	+	CLPB3	Cre02.g090850.t1.1		2340618,2340967,2341586,2342237,2342721,2343254,2343700,2344129,2344767,2345156,2345791,2347357	2340741,2341174,2341898,2342407,2343005,2343424,2343834,2344416,2344946,2345528,2346077,2348785	probably chloroplastic or mitochondrial, by homology to At5g15450 and At2g25140 (PMID: 17144892)
chr2	2348791	2352626	2348916	2352598	-	MCP9	Cre02.g090900.t1.1		2352486,2352295,2351975,2351585,2351187,2350929,2350417,2350061,2349660,2349403,2349123,2348791	2352626,2352392,2352095,2351685,2351249,2350970,2350693,2350096,2349721,2349483,2349168,2348981	Related to MRS3/4
chr2	2348791	2352626	2348916	2352598	-	MCP9	Cre02.g090900.t2.1		2352486,2352295,2351975,2351585,2351187,2350929,2350417,2349660,2349403,2349123,2348791	2352626,2352392,2352095,2351685,2351249,2350970,2350693,2349721,2349483,2349168,2348981	Related to MRS3/4
chr2	2352777	2367195	2353135	2366416	+	Cre02.g090950.t1.1	Cre02.g090950.t1.1		2352777,2357024,2357491,2357784,2358576,2359378,2363135,2363959,2364627	2356780,2357263,2357619,2358305,2359214,2362968,2363816,2364526,2367195	
chr2	2367515	2374806	2367871	2374132	+	Cre02.g091000.t1.2	Cre02.g091000.t1.2		2367515,2368406,2369167,2369578,2370539,2371310,2371723,2372205,2372507,2372875	2368118,2368916,2369248,2370102,2370697,2371447,2371851,2372285,2372644,2374806	
chr2	2376375	2380018	2376568	2379394	+	ALAD	Cre02.g091050.t1.2		2376375,2376766,2376887,2377328,2377925,2378373,2378843,2379157	2376691,2376804,2377126,2377432,2378035,2378578,2378954,2380018	Delta-aminolevulinic acid dehydratase, chloroplast precursor (porphobilinogen synthase) (ALADH) (HEM2) [PMID: 7894023; PMID: 12228605]; predicted chloroplast targeting sequence amino acids 1-70 by ChloroP
chr2	2380145	2381650	2380290	2381547	+	RPL15	Cre02.g091100.t1.2		2380145,2380485,2380792,2381364	2380389,2380700,2380992,2381650	Cytosolic 60S large subunit ribosomal protein L15
chr2	2381755	2390964	2382454	2390720	-	SEC24A	Cre02.g091150.t1.1		2390829,2390671,2390513,2389635,2389072,2388601,2388190,2387616,2387226,2386862,2386341,2385930,2385379,2385111,2384673,2384261,2383920,2383445,2383139,2382832,2381755	2390964,2390730,2390575,2390332,2389283,2388759,2388337,2387776,2387348,2386949,2386532,2386013,2385539,2385183,2384749,2384413,2384057,2383646,2383222,2382969,2382586	Expressed Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex.
chr2	2391372	2392844	2391414	2392742	-	Cre02.g091193.t1.2	Cre02.g091193.t1.2		2392640,2392242,2391572,2391372	2392844,2392469,2391642,2391463	
chr2	2392965	2398834	2393257	2398100	+	Cre02.g091200.t1.1	Cre02.g091200.t1.1		2392965,2393626,2393993,2394419,2395036,2395471,2395672,2396146,2396596,2397102,2397598,2397875	2393387,2393772,2394092,2394528,2395163,2395513,2395720,2396324,2396741,2397281,2397705,2398834	
chr2	2398849	2399894	2398910	2399841	-	Cre02.g091226.t1.1	Cre02.g091226.t1.1		2398849	2399894	
chr2	2400005	2401926	2400035	2401363	+	Cre02.g091250.t1.2	Cre02.g091250.t1.2		2400005,2400205,2400640,2400994	2400062,2400264,2400753,2401926	
chr2	2401975	2403736	2402002	2403411	+	Cre02.g091300.t1.1	Cre02.g091300.t1.1		2401975,2402277,2402716,2403042	2402116,2402312,2402808,2403736	
chr2	2403785	2406366	2404050	2405543	+	Cre02.g091350.t1.1	Cre02.g091350.t1.1		2403785,2404325,2404764,2405174	2404164,2404360,2404940,2406366	
chr2	2403785	2406366	2404050	2405543	+	Cre02.g091350.t2.1	Cre02.g091350.t2.1		2403785,2404325,2404764,2405174	2404164,2404360,2404889,2406366	
chr2	2406389	2415014	2406645	2414880	-	CLPB2	Cre02.g091400.t1.1		2414844,2414589,2414253,2413920,2413227,2412765,2412340,2411050,2410483,2409513,2408710,2406389	2415014,2414752,2414394,2414035,2413384,2412916,2412473,2412137,2410752,2410309,2408916,2407617	predicted mitochondrial
chr2	2415155	2417366	2415353	2417073	+	Cre02.g091450.t1.1	Cre02.g091450.t1.1		2415155,2415448,2415648,2416661	2415377,2415524,2416382,2417366	
chr2	2417415	2434876	2417639	2434579	+	Cre02.g091500.t1.1	Cre02.g091500.t1.1		2417415,2417910,2418153,2418485,2418676,2418896,2419392,2420424,2420652,2421281,2421515,2421837,2422744,2423447,2424895,2425167,2425619,2425868,2426123,2426786,2427013,2427361,2427979,2429738,2430442,2432934,2433700,2434089,2434405	2417830,2417995,2418315,2418565,2418750,2419309,2420320,2420505,2421079,2421430,2421701,2422607,2423248,2424743,2425032,2425491,2425752,2425983,2426649,2426885,2427187,2427797,2429556,2430260,2432783,2433545,2433852,2434214,2434876	
chr2	2434923	2437426	2435030	2436962	+	WHI	Cre02.g091550.t1.2		2434923,2435401,2435789,2436121,2436445,2436884	2435186,2435553,2435905,2436237,2436540,2437426	Homolog of PBF-2 single-strand DNA-binding transcription regulator (see PMID: 1948264) and early zygote expressed protein EZY18 [PMID: 1848763]
chr2	2437725	2439906	2437845	2439885	+	Cre02.g091567.t1.1	Cre02.g091567.t1.1		2437725,2438923,2439885	2438691,2439682,2439906	
chr2	2437725	2439906	2437845	2439885	+	Cre02.g091567.t2.1	Cre02.g091567.t2.1		2437725,2439145,2439885	2438691,2439682,2439906	
chr2	2439955	2441006	2440000	2440921	+	Cre02.g091600.t1.1	Cre02.g091600.t1.1		2439955,2440808	2440073,2441006	
chr2	2441055	2445336	2441161	2445176	+	Cre02.g091650.t1.1	Cre02.g091650.t1.1		2441055,2441348,2442079,2442722,2443334,2443669,2444166,2444506,2444870	2441164,2441942,2442503,2443178,2443470,2443772,2444250,2444724,2445336	
chr2	2445347	2448854	2445977	2448655	-	RIB72	Cre02.g091700.t1.2		2448598,2448299,2448032,2447565,2445347	2448854,2448523,2448181,2447820,2447197	
chr2	2449363	2453944	2450004	2453792	-	Cre02.g091750.t1.2	Cre02.g091750.t1.2		2453723,2453538,2453273,2452518,2452340,2450932,2450212,2449363	2453944,2453610,2453459,2453112,2452409,2452167,2450273,2450094	
chr2	2449363	2453919	2450004	2453792	-	Cre02.g091750.t2.1	Cre02.g091750.t2.1		2453723,2453538,2453273,2452518,2452340,2450932,2450212,2449363	2453919,2453610,2453459,2453109,2452409,2452167,2450273,2450094	
chr2	2449363	2453919	2450004	2453792	-	Cre02.g091750.t3.1	Cre02.g091750.t3.1		2453723,2453538,2453273,2452518,2452340,2450212,2449363	2453919,2453610,2453459,2453109,2452409,2450273,2450094	
chr2	2454045	2457549	2454849	2457079	+	Cre02.g091850.t1.2	Cre02.g091850.t1.2		2454045,2454330,2454448,2454661,2455618,2455897,2456275,2456645,2456929	2454223,2454360,2454494,2455357,2455721,2456055,2456394,2456716,2457549	
chr2	2458043	2464224	2458617	2464005	-	FAP301	Cre02.g091900.t1.1		2463948,2463766,2463566,2463245,2462909,2462566,2460840,2460379,2460008,2459582,2458952,2458043	2464224,2463852,2463689,2463381,2463094,2462722,2462338,2460566,2460178,2459807,2459290,2458776	Similar to tropomyosin
chr2	2465181	2474554	2466040	2474229	-	CYG45	Cre02.g091950.t1.1		2474079,2473172,2468759,2468434,2467682,2467444,2467000,2466822,2466566,2466241,2465181	2474554,2473790,2473059,2468580,2468174,2467550,2467278,2466888,2466631,2466428,2466094	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr2	2475789	2480804	2476334	2480382	-	DEG2	Cre02.g092000.t1.1		2480113,2479651,2479161,2478804,2478509,2478146,2477828,2477597,2477181,2476875,2476673,2475789	2480804,2479879,2479357,2478961,2478636,2478331,2477965,2477674,2477336,2476970,2476735,2476568	DegP-type protease, probably on thylakoid stromal surface; one PDZ domain; most similar to Arabidopsis DegP2 and DegP9
chr2	2481472	2484034	2481860	2483563	-	MCP6	Cre02.g092050.t1.1		2483850,2483713,2483530,2483210,2482320,2481472	2484034,2483758,2483610,2483311,2483087,2482064	
chr2	2484155	2499446	2484252	2499126	+	Cre02.g092076.t1.1	Cre02.g092076.t1.1		2484155,2484458,2484673,2484959,2485524,2492489,2494633,2495119	2484364,2484549,2484768,2485361,2492327,2494518,2495011,2499446	
chr2	2499491	2500594	2500165	2500532	-	Cre02.g092100.t1.2	Cre02.g092100.t1.2		2499491	2500594	
chr2	2500641	2504834	2501287	2504796	-	CSL	Cre02.g092150.t1.2		2504715,2504482,2504306,2504080,2503599,2503230,2502870,2502453,2502105,2501653,2500641	2504834,2504627,2504374,2504148,2503742,2503367,2503007,2502662,2502237,2501726,2501414	Similar to RAS-signaling-related leucine-rich repeat protein; necessary for ROC15 protein (but not mRNA) degradation in response to red and violet light, and phase resetting of the circadian clock.
chr2	2504889	2509814	2505221	2509708	-	Cre02.g092200.t1.2	Cre02.g092200.t1.2		2509526,2508801,2508287,2507343,2506627,2505862,2504889	2509814,2509362,2508646,2508092,2506700,2506448,2505637	null-allele mutant was isolated (PMID 29743196)
chr2	2510096	2513794	2510460	2513766	-	FKB42	Cre02.g092250.t1.2		2513492,2513160,2512853,2512432,2512079,2511666,2511264,2510096	2513794,2513258,2512994,2512480,2512210,2511818,2511376,2510998	Multi-domain protein, with a FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8, PPIase, Rotamase, immunophilin), a TPR repeat, a calmodulin-binding site and, a transmembrane region [PMID: 15701785]; conserved in plants and red algae
chr2	2513846	2518216	2514415	2517817	-	Cre02.g092284.t1.1	Cre02.g092284.t1.1		2517645,2517286,2516059,2515903,2515499,2515173,2514828,2513846	2518216,2517373,2516422,2515961,2515615,2515324,2514883,2514628	
chr2	2513846	2518216	2514415	2517817	-	Cre02.g092284.t2.1	Cre02.g092284.t2.1		2517645,2517286,2515499,2515173,2514828,2513846	2518216,2517373,2515615,2515324,2514883,2514628	
chr2	2518335	2523186	2518460	2521843	+	CYP51G1	Cre02.g092350.t1.2		2518335,2518742,2519191,2519477,2519821,2520172,2520465,2520918,2521394,2521708	2518658,2518891,2519340,2519570,2519947,2520273,2520600,2521130,2521576,2523186	Cytochrome P450 like protein similar to CYP51A (ABC59074), possible sterol 14-demethylase involved in sterol/ergosterol biosynthesis. CYP51G1 is the P450 nomenclature for sterol 14 alpha demethylases of green plants. ERG11 is a name from the fungal ergosterol pathway. These are orthologs.
chr2	2524028	2527246	2524218	2526413	+	Cre02.g092400.t1.1	Cre02.g092400.t1.1		2524028,2524381,2524605,2524831,2525177,2526237	2524245,2524533,2524730,2525013,2526125,2527246	null-allele mutant was isolated (PMID 29743196)
chr2	2527252	2529240	2527591	2528634	-	Cre02.g092451.t1.1	Cre02.g092451.t1.1		2529090,2528836,2528625,2528348,2528096,2527817,2527252	2529240,2528985,2528713,2528491,2528107,2527911,2527688	
chr2	2529358	2538239	2529454	2537469	+	UPF1	Cre02.g092500.t1.1		2529358,2529810,2530048,2530367,2530780,2531073,2531542,2531866,2532225,2532563,2532921,2533258,2533621,2534010,2534358,2534592,2534917,2535355,2535711,2536009,2536289,2536844,2537460	2529592,2529884,2530104,2530455,2530888,2531276,2531640,2532000,2532389,2532679,2533038,2533418,2533839,2534219,2534429,2534720,2535100,2535539,2535850,2536156,2536702,2537266,2538239	putative regulator of nonsense transcripts 1 (UPF1). Part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. Cytoplasmic localization. High homology to Arabidopsis thaliana accession AAL92018
chr2	2538250	2542682	2538789	2542467	-	TPR1	Cre02.g092550.t1.1		2542428,2542075,2541795,2541432,2540791,2540445,2540145,2538250	2542682,2542149,2541938,2541651,2541248,2540582,2540258,2539977	Contains TPR repeats, possible chloroplast-targeted protein similar to Arabidopsis Q9C588.
chr2	2542807	2545439	2542955	2545099	+	CPX2	Cre02.g092600.t1.2		2542807,2543351,2543565,2544026,2544258,2544473,2544923	2543150,2543420,2543800,2544114,2544320,2544693,2545439	Coproporphyrinogen III oxidase, mitochondrial or chloroplast precursor; CPO2 [PMID: 15849308]; Predicted chloroplast transit peptide 1-32
chr2	2545442	2547217	2545903	2546641	-	Cre02.g092650.t1.1	Cre02.g092650.t1.1		2546582,2546316,2546082,2545442	2547217,2546403,2546137,2545985	
chr2	2547316	2550549	2547478	2549911	+	FAP45	Cre02.g092700.t1.2		2547316,2547596,2547831,2548175,2549038,2549662	2547507,2547668,2547969,2548857,2549370,2550549	Flagella Associated Protein, found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG28 [PMID: 15964273]. Transcript highly upregulated during flagellar regeneration [PMID: 15738400]. Weakly similar to nasopharyngeal epithelium-specific protein 1, found in human cilia proteome [PMID: 12169685].
chr2	2550618	2559043	2550916	2558329	+	SSA18	Cre02.g092750.t1.1		2550618,2551188,2551588,2552101,2552872,2553185,2553461,2556267,2557175	2551088,2551264,2551962,2552490,2552978,2553347,2556154,2557068,2559043	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr2	2559282	2561567	2560367	2561460	-	FAP136	Cre02.g092800.t1.2		2561400,2560948,2560748,2559282	2561567,2561196,2560861,2560502	Flagellar Associated Protein, found in the flagellar proteome
chr2	2562238	2564498	2562472	2563903	+	DLU1	Cre02.g092850.t1.2		2562238,2562643,2563088,2563406,2563810	2562553,2562713,2563259,2563585,2564498	LC1 component of outer arm dynein; leucine-rich repeat protein; mutants in this gene were characterized by Patel-King and King, PMID: 1962633
chr2	2564690	2568977	2565675	2568882	-	GUA1	Cre02.g092900.t1.2		2568747,2568309,2567791,2567432,2566736,2564690	2568977,2568659,2567976,2567566,2566956,2566255	
chr2	2569466	2570667	2569619	2570397	-	Cre02.g092926.t1.1	Cre02.g092926.t1.1		2570168,2569466	2570667,2569619	
chr2	2572233	2576114	2572511	2575057	+	Cre02.g092950.t1.2	Cre02.g092950.t1.2		2572233,2572944,2573257,2573518,2573985,2574529	2572759,2573046,2573347,2573661,2574196,2576114	
chr2	2579708	2582463	2580491	2580775	+	Cre02.g092983.t1.1	Cre02.g092983.t1.1		2579708,2580622	2580518,2582463	
chr2	2583618	2586299	2583764	2584700	+	Cre02.g093017.t1.1	Cre02.g093017.t1.1		2583618,2584547	2583785,2586299	
chr2	2616982	2621757	2617159	2621496	-	Cre02.g093051.t1.1	Cre02.g093051.t1.1		2621432,2619209,2616982	2621757,2620869,2619148	
chr2	2622892	2624507	2623364	2624352	-	Cre02.g093084.t1.1	Cre02.g093084.t1.1		2622892	2624507	
chr2	2632143	2632947	2632535	2632812	-	Cre02.g093117.t1.1	Cre02.g093117.t1.1		2632143	2632947	
chr2	2632862	2634417	2633233	2634302	-	Cre02.g093150.t1.2	Cre02.g093150.t1.2		2632862	2634417	
chr2	2632999	2634417	2633233	2634302	-	Cre02.g093150.t2.1	Cre02.g093150.t2.1		2632999	2634417	
chr2	2640258	2643929	2640542	2643911	+	Cre02.g093202.t1.1	Cre02.g093202.t1.1		2640258,2642295,2643906	2641746,2643608,2643929	
chr2	2647018	2650335	2648091	2649205	+	Cre02.g093252.t1.1	Cre02.g093252.t1.1		2647018,2648090,2648720	2647222,2648488,2650335	
chr2	2673452	2681147	2674050	2681050	-	Cre02.g093300.t1.1	Cre02.g093300.t1.1		2680901,2680588,2680107,2679742,2679089,2678644,2678309,2677809,2677032,2676705,2676339,2676066,2675611,2675280,2675086,2674887,2674647,2674487,2673452	2681147,2680741,2680163,2679843,2679224,2678813,2678440,2677991,2677137,2676785,2676510,2676138,2675774,2675448,2675148,2674921,2674715,2674546,2674264	
chr2	2681248	2685036	2681465	2684545	+	Cre02.g093350.t1.1	Cre02.g093350.t1.1		2681248,2681724,2682045,2682429,2682719,2683002,2683442,2683640,2683827,2683987,2684232,2684485	2681577,2681815,2682115,2682566,2682810,2683261,2683489,2683702,2683894,2684050,2684306,2685036	
chr2	2681248	2685036	2681465	2684545	+	Cre02.g093350.t2.1	Cre02.g093350.t2.1		2681248,2681751,2682045,2682429,2682719,2683002,2683442,2683640,2683827,2683987,2684232,2684485	2681577,2681815,2682115,2682566,2682810,2683261,2683489,2683702,2683894,2684050,2684306,2685036	
chr2	2685042	2687918	2685086	2687822	-	Cre02.g093401.t1.1	Cre02.g093401.t1.1		2686351,2685042	2687918,2686105	
chr2	2688048	2691909	2688120	2691150	+	FBA2	Cre02.g093450.t1.2		2688048,2688952,2689232,2689536,2689808,2690114,2690566,2690937	2688246,2689122,2689360,2689613,2689867,2690295,2690719,2691909	fructose-1,6-bisphosphate aldolase [EC 4.1.2.13]; glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate
chr2	2693746	2701157	2694264	2700207	+	SSD1	Cre02.g093500.t1.2		2693746,2694601,2694802,2695135,2695532,2695842,2696245,2696610,2696924,2697575,2697891,2698183,2698531,2698894,2699105,2699352,2699525,2699736,2699978	2694392,2694706,2694978,2695350,2695664,2695991,2696456,2696708,2697415,2697748,2698012,2698327,2698728,2698959,2699204,2699404,2699581,2699800,2701157	Contains a sterol sensing 5-transmembrane domain similar to those in SCAP, Patched, NPC1 and HMGR
chr2	2693746	2700672	2694264	2700207	+	SSD1	Cre02.g093500.t2.1		2693746,2694601,2694802,2695135,2695532,2695842,2696245,2696610,2696924,2697575,2697891,2698183,2698531,2698894,2699105,2699352,2699525,2699736,2699978	2694392,2694706,2694978,2695350,2695664,2695991,2696456,2696708,2697415,2697748,2698012,2698327,2698728,2698959,2699204,2699404,2699581,2699800,2700672	Contains a sterol sensing 5-transmembrane domain similar to those in SCAP, Patched, NPC1 and HMGR
chr2	2702086	2713760	2702558	2712733	+	CYG44	Cre02.g093550.t1.1		2702086,2702752,2702979,2703870,2704109,2706886,2707168,2709811,2710032,2710272,2710484,2710735,2711587,2712030,2712266	2702570,2702813,2703639,2703985,2706785,2707001,2709700,2709888,2710076,2710367,2710582,2711439,2711680,2712113,2713760	C terminal domain similar to Guanylyl Cyclase family member (gcy-4) [Caenorhabditis elegans]; null-allele passenger mutation was isolated (PMID 29743196)
chr2	2716663	2720215	2717621	2719935	-	TEH3	Cre02.g093600.t1.2		2719836,2719448,2717986,2716663	2720215,2719657,2718378,2717798	
chr2	2720276	2722495	2721180	2722429	-	Cre02.g093650.t1.2	Cre02.g093650.t1.2		2722282,2721862,2721650,2721361,2720276	2722495,2721936,2721670,2721513,2721222	
chr2	2722592	2731475	2723026	2731325	-	Cre02.g093700.t1.1	Cre02.g093700.t1.1		2731106,2730941,2730490,2730106,2729603,2729392,2729075,2728735,2728563,2728058,2727777,2727411,2727016,2726828,2726452,2725323,2725076,2724831,2724306,2723987,2723686,2723439,2722592	2731475,2731020,2730586,2730237,2729856,2729479,2729223,2728832,2728616,2728398,2727948,2727586,2727249,2726887,2726685,2726312,2725180,2724965,2724424,2724161,2723820,2723545,2723246	
chr2	2722592	2732755	2723026	2732105	-	Cre02.g093700.t2.1	Cre02.g093700.t2.1		2732612,2731940,2730941,2730490,2730106,2729603,2729392,2729075,2728735,2728563,2728058,2727777,2727411,2727016,2726828,2726452,2725323,2725076,2724831,2724306,2723987,2723686,2723439,2722592	2732755,2732398,2731020,2730586,2730237,2729856,2729479,2729223,2728832,2728616,2728398,2727948,2727586,2727249,2726887,2726685,2726312,2725180,2724965,2724424,2724161,2723820,2723545,2723246	
chr2	2732866	2736347	2734131	2736194	-	NRX2	Cre02.g093750.t1.2		2736152,2735896,2735548,2734918,2732866	2736347,2736028,2735798,2735345,2734690	Nucleoredoxin, nuclear thioredoxin-like protein, contains two thioredoxin motifs with a WCPPC active site in each motif; closely related to nearby NRX1 and divergent NRX3 (truncated)
chr2	2736456	2739124	2737630	2738218	+	NRX3	Cre02.g093800.t1.2		2736456,2736938,2737347,2738007	2736833,2737077,2737779,2739124	related to animal thioredoxin, nucleoredoxin; sequence appears truncated, possibly a pseudogene; closely related to nearby NRX1 and divergent NRX2
chr2	2736456	2739124	2737630	2738218	+	NRX3	Cre02.g093800.t2.1		2736456,2736938,2737347,2738007	2736813,2737077,2737779,2739124	related to animal thioredoxin, nucleoredoxin; sequence appears truncated, possibly a pseudogene; closely related to nearby NRX1 and divergent NRX2
chr2	2739176	2753784	2739654	2753414	+	Cre02.g093850.t1.1	Cre02.g093850.t1.1		2739176,2739543,2739942,2740178,2740406,2740743,2741133,2741596,2741819,2742071,2742432,2742710,2743040,2743324,2744315,2744553,2745136,2745474,2745700,2746013,2746365,2746671,2747115,2747492,2747876,2748297,2749043,2750566,2750954,2751226,2752213,2752488,2752801,2753095	2739324,2739750,2740001,2740249,2740607,2740987,2741392,2741662,2741911,2742211,2742569,2742840,2743196,2743523,2744408,2744984,2745321,2745524,2745875,2746160,2746448,2746941,2747333,2747700,2748037,2748667,2750243,2750766,2751042,2752084,2752323,2752631,2752907,2753784	
chr2	2753836	2756177	2754002	2755935	+	Cre02.g093900.t1.2	Cre02.g093900.t1.2		2753836,2754858,2755165,2755455,2755806	2754676,2755011,2755230,2755532,2756177	
chr2	2756180	2759385	2757443	2759110	-	Cre02.g093950.t1.2	Cre02.g093950.t1.2		2758465,2757821,2756180	2759385,2758102,2757614	
chr2	2759486	2769767	2759804	2769536	+	Cre02.g093975.t1.1	Cre02.g093975.t1.1		2759486,2760722,2761011,2761133,2761613,2762281,2762754,2763131,2763770,2765440,2766066,2766467,2767477,2767793,2768120,2768391,2768710,2769269	2760081,2760813,2761034,2761450,2762153,2762419,2762993,2763604,2765285,2765894,2766330,2767327,2767598,2767928,2768218,2768522,2769060,2769767	
chr2	2759486	2769767	2759804	2769536	+	Cre02.g093975.t2.1	Cre02.g093975.t2.1		2759486,2760722,2761133,2761613,2762281,2762754,2763131,2763770,2765440,2766066,2766467,2767477,2767793,2768120,2768391,2768710,2769269	2760081,2760813,2761450,2762153,2762419,2762993,2763604,2765285,2765894,2766330,2767327,2767598,2767928,2768218,2768522,2769060,2769767	
chr2	2759486	2760337	2759804	2760185	+	Cre02.g093975.t3.1	Cre02.g093975.t3.1		2759486,2760174	2760081,2760337	
chr2	2769816	2775497	2770128	2775171	+	PIGO	Cre02.g094050.t1.1		2769816,2770344,2770584,2770789,2771046,2771463,2771692,2772406,2772869	2770161,2770421,2770685,2770908,2771310,2771552,2772242,2772770,2775497	functions in the transfer of ethanolaminephosphate (EtNP) to the third mannose in the GPI anchor; usually associated with PIG-F, but PIG-F is missing in Chlorophyceae and Trebouxiophyceae
chr2	2775546	2778029	2775667	2777742	+	NRX1	Cre02.g094100.t1.2		2775546,2775787,2776203,2776619,2777198	2775718,2775919,2776453,2777046,2778029	Nucleoredoxin, nuclear thioredoxin-like protein, contains two thioredoxin motifs with a WCPPC active site in each motif; may be a redox regulator of nuclear protein, such as transcriptional factors, under stress conditions [PMID: 9119370]. Low-CO2 inducible gene (LCI35) revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]; closely related to nearby NRX2 and truncated NRX3
chr2	2779156	2784937	2779371	2783404	+	HKR2	Cre02.g094150.t1.2		2779156,2779930,2780211,2782987	2779569,2779995,2782838,2784937	Similar to APRR9 (PSEUDO-RESPONSE REGULATOR 9); transcription regulator - cd156, REC; contains only the Signal receiver domain and a CCT domain, not the kinase domain
chr2	2785026	2789823	2785203	2789192	+	Cre02.g094200.t1.1	Cre02.g094200.t1.1		2785026,2785526,2785753,2786060,2786310,2786850,2787110,2787528,2787743	2785284,2785576,2785782,2786124,2786509,2786902,2787212,2787595,2789823	
chr2	2789889	2793354	2791033	2793113	-	Cre02.g094250.t1.1	Cre02.g094250.t1.1		2793005,2792749,2792509,2792070,2789889	2793354,2792859,2792566,2792281,2791834	
chr2	2793439	2798544	2793766	2798255	-	FUO1	Cre02.g094300.t1.2		2798186,2797973,2797700,2797286,2796897,2796463,2796192,2795867,2795629,2795401,2795200,2794999,2794805,2794497,2794200,2793439	2798544,2798029,2797795,2797371,2796999,2796618,2796266,2795980,2795691,2795491,2795288,2795082,2794842,2794637,2794350,2794003	Putative electron-transferring-flavoprotein dehydrogenase (ETFDH); electron transfer flavoprotein ubiquinone oxidoreductase.
chr2	2798686	2803312	2799056	2802631	+	Cre02.g094350.t1.1	Cre02.g094350.t1.1		2798686,2799129,2799642,2799802,2800428,2801249,2801541,2802001,2802400	2799059,2799230,2799687,2800331,2801039,2801412,2801794,2802224,2803312	
chr2	2803636	2807610	2804050	2806556	+	Cre02.g094400.t1.2	Cre02.g094400.t1.2		2803636,2804393,2804763,2805158,2805399,2805807,2806105	2804213,2804538,2804943,2805246,2805660,2805864,2807610	
chr2	2807640	2808795	2808002	2808241	-	Cre02.g094426.t1.1	Cre02.g094426.t1.1		2808194,2807640	2808795,2808135	
chr2	2808946	2813363	2809183	2812544	+	PHC38	Cre02.g094450.t1.2		2808946,2809464,2809656,2810091,2812006	2809222,2809557,2809683,2811851,2813363	belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain.
chr2	2813666	2815055	2814536	2814768	-	Cre02.g094500.t1.2	Cre02.g094500.t1.2		2813666	2815055	
chr2	2816606	2825567	2816635	2824223	+	Cre02.g094551.t1.1	Cre02.g094551.t1.1		2816606,2817564,2818549,2819274,2819477,2819876,2820234,2821303,2822054,2822252,2822640,2822870	2817384,2818373,2819132,2819364,2819678,2819989,2821087,2821910,2822144,2822495,2822753,2825567	null-allele mutant was isolated (PMID 29743196)
chr2	2825614	2840325	2826296	2839612	-	Cre02.g094600.t1.1	Cre02.g094600.t1.1		2839940,2839249,2838931,2838502,2838063,2837305,2837027,2836699,2836247,2835997,2835513,2835107,2834885,2834622,2834195,2833895,2833464,2832995,2832627,2832259,2831910,2831527,2831259,2830878,2830586,2830156,2829795,2827345,2826830,2825614	2840325,2839738,2839038,2838679,2838229,2837833,2837137,2836844,2836468,2836064,2835836,2835282,2834927,2834740,2834395,2834063,2833710,2833264,2832813,2832451,2832100,2831769,2831377,2831045,2830689,2830364,2829901,2829564,2827204,2826623	
chr2	2840526	2844427	2841239	2844277	+	Cre02.g094650.t1.2	Cre02.g094650.t1.2		2840526,2841782,2842462,2842758,2843166,2843417,2843621,2844037	2841600,2842287,2842564,2842873,2843267,2843465,2843811,2844427	
chr2	2844430	2848855	2845310	2847883	-	Cre02.g094700.t1.2	Cre02.g094700.t1.2		2848061,2847405,2847195,2846941,2846629,2844430	2848855,2847903,2847273,2847067,2846757,2846456	
chr2	2849799	2854344	2851215	2853716	-	Cre02.g094750.t1.2	Cre02.g094750.t1.2		2854088,2853415,2853167,2852767,2852466,2849799	2854344,2853783,2853263,2852890,2852591,2852196	
chr2	2849799	2854234	2851215	2853716	-	Cre02.g094750.t2.1	Cre02.g094750.t2.1		2853937,2853415,2853167,2852767,2852466,2849799	2854234,2853783,2853263,2852890,2852591,2852196	
chr2	2854399	2872984	2855130	2872673	-	Cre02.g094801.t1.1	Cre02.g094801.t1.1		2872648,2871197,2870896,2870606,2870384,2870075,2869766,2869463,2869127,2868938,2868611,2868186,2867526,2867017,2865997,2865630,2865284,2864896,2864428,2864183,2861645,2859942,2859590,2859231,2858842,2858268,2858015,2857767,2857506,2857296,2857018,2856058,2854399	2872984,2872453,2871009,2870760,2870455,2870217,2869866,2869556,2869282,2868999,2868726,2868280,2868006,2867152,2866871,2865755,2865401,2865059,2864766,2864264,2864062,2861533,2859742,2859403,2858986,2858444,2858096,2857845,2857551,2857364,2857088,2856816,2855872	null-allele passenger mutation was isolated (PMID 29743196)
chr2	2873515	2880286	2873632	2879989	+	Cre02.g094850.t1.1	Cre02.g094850.t1.1		2873515,2874135,2874326,2874688,2875212,2876497,2876809,2877265,2877556	2873681,2874157,2874484,2874744,2876295,2876587,2877118,2877396,2880286	
chr2	2880299	2889614	2882337	2889389	-	Cre02.g094900.t1.1	Cre02.g094900.t1.1		2889190,2888643,2888328,2885825,2885111,2884760,2884493,2884101,2883447,2883127,2880299	2889614,2888735,2888459,2888120,2885264,2884867,2884591,2884217,2883773,2883240,2882949	
chr2	3690531	3692451	3691034	3692319	-	PLA2	Cre02.g095000.t1.2		3692186,3691881,3691563,3691381,3690531	3692451,3692004,3691633,3691397,3691118	phospholipase A2 protein, similar to Arabidopsis thaliana At4g29460
chr2	2907045	2918844	2907500	2918288	-	Cre02.g095032.t1.1	Cre02.g095032.t1.1		2916639,2915915,2915258,2913090,2911141,2908824,2907723,2907045	2918844,2916573,2915683,2913533,2912916,2911024,2907816,2907580	
chr2	2928135	2932774	2928221	2932260	+	Cre02.g095033.t1.1	Cre02.g095033.t1.1		2928135,2929545,2930544,2931772	2928806,2929718,2930751,2932774	
chr2	2937239	2939174	2937453	2939084	-	Cre02.g095034.t1.1	Cre02.g095034.t1.1		2938483,2937676,2937239	2939174,2938101,2937533	
chr2	2941240	2945164	2943308	2944779	-	Cre02.g095035.t1.1	Cre02.g095035.t1.1		2944730,2943810,2943562,2941240	2945164,2944634,2943669,2943337	
chr2	2962675	2964536	2962744	2963072	+	Cre02.g095036.t1.1	Cre02.g095036.t1.1		2962675	2964536	
chr2	2964615	2967326	2964878	2966442	+	Cre02.g095037.t1.1	Cre02.g095037.t1.1		2964615,2965993,2966430	2965804,2966263,2967326	
chr2	2967605	2969856	2968337	2968731	+	Cre02.g095038.t1.1	Cre02.g095038.t1.1		2967605	2969856	
chr2	2972211	2975784	2974311	2975696	-	Cre02.g095039.t1.1	Cre02.g095039.t1.1		2975548,2975370,2974551,2972211	2975784,2975425,2975174,2974317	
chr2	2972319	2975784	2974311	2975696	-	Cre02.g095039.t2.1	Cre02.g095039.t2.1		2975548,2975370,2974551,2972319	2975784,2975425,2975174,2974317	
chr2	2976196	2977244	2976528	2977104	-	Cre02.g095040.t1.1	Cre02.g095040.t1.1		2976843,2976613,2976196	2977244,2976650,2976535	
chr2	3008150	3010785	3008566	3010544	-	Cre02.g095041.t1.1	Cre02.g095041.t1.1		3009203,3008150	3010785,3009022	
chr2	3010946	3013125	3011069	3011447	+	Cre02.g095042.t1.1	Cre02.g095042.t1.1		3010946,3011394	3011298,3013125	
chr2	3013130	3016465	3014589	3016364	-	Cre02.g095043.t1.1	Cre02.g095043.t1.1		3015771,3013130	3016465,3015700	
chr2	3017796	3019906	3018838	3019748	-	Cre02.g095044.t1.1	Cre02.g095044.t1.1		3017796	3019906	
chr2	3025468	3042745	3025775	3042545	-	Cre02.g095045.t1.1	Cre02.g095045.t1.1		3041951,3041661,3041356,3041129,3040835,3040515,3040207,3039891,3039616,3039330,3038958,3038775,3038360,3038064,3037696,3037421,3037234,3036575,3036182,3035662,3035451,3035112,3034715,3034145,3033814,3032781,3031454,3031146,3030699,3030212,3030008,3029799,3029106,3028795,3028531,3028333,3028143,3027902,3027653,3027285,3026960,3026555,3025468	3042745,3041692,3041461,3041216,3040900,3040648,3040296,3040059,3039714,3039392,3039070,3038833,3038488,3038226,3037887,3037507,3037314,3037066,3036466,3035971,3035523,3035308,3034992,3034573,3034044,3033605,3032521,3031268,3030829,3030272,3030046,3029851,3029216,3028867,3028667,3028375,3028250,3028001,3027780,3027422,3027022,3026690,3026416	
chr2	3045832	3053295	3046499	3052381	-	Cre02.g095046.t1.1	Cre02.g095046.t1.1		3053086,3052909,3052669,3052195,3051510,3050735,3050475,3050096,3049931,3049596,3049208,3048740,3048385,3048083,3045832	3053295,3052969,3052753,3052389,3051698,3050805,3050565,3050245,3050030,3049765,3049461,3048897,3048395,3048250,3046883	
chr2	3057660	3059855	3058027	3059279	-	Cre02.g095047.t1.1	Cre02.g095047.t1.1		3059230,3057660	3059855,3058560	
chr2	3060180	3069205	3061089	3068448	-	Cre02.g095048.t1.1	Cre02.g095048.t1.1		3069144,3068967,3068717,3068262,3067577,3066845,3066320,3065584,3065128,3061571,3061263,3060180	3069205,3069027,3068801,3068456,3067765,3066915,3066611,3065796,3065353,3064869,3061344,3061089	
chr2	3069260	3070875	3069864	3070498	-	Cre02.g095049.t1.1	Cre02.g095049.t1.1		3070627,3070448,3070239,3069968,3069260	3070875,3070510,3070290,3070059,3069889	
chr2	3692596	3698327	3692708	3697741	+	Cre02.g095050.t2.1	Cre02.g095050.t2.1		3692596,3693204,3693587,3693917,3694264,3694882,3695439,3695800,3696085,3696238,3696608,3696838,3697546	3693035,3693365,3693725,3694032,3694737,3695118,3695515,3695870,3696134,3696414,3696680,3697304,3698327	
chr2	3692576	3698327	3692708	3697741	+	Cre02.g095050.t1.1	Cre02.g095050.t1.1		3692576,3693204,3693587,3693920,3694264,3694882,3695439,3695800,3696085,3696238,3696608,3696838,3697546	3693035,3693365,3693725,3694032,3694737,3695118,3695515,3695870,3696134,3696414,3696680,3697304,3698327	
chr2	3071070	3072855	3071361	3072738	-	Cre02.g095051.t1.1	Cre02.g095051.t1.1		3072731,3072583,3072220,3071786,3071524,3071070	3072855,3072663,3072377,3071971,3071609,3071361	
chr2	3072920	3075065	3073045	3074071	-	Cre02.g095052.t1.1	Cre02.g095052.t1.1		3074272,3074064,3073968,3073653,3073426,3073209,3072920	3075065,3074116,3073975,3073748,3073513,3073276,3073045	
chr2	3076080	3084385	3077031	3083951	-	Cre02.g095053.t1.1	Cre02.g095053.t1.1		3084349,3084159,3083933,3083515,3082813,3082504,3082169,3081734,3081314,3077309,3076080	3084385,3084220,3083965,3083748,3083025,3082571,3082328,3081964,3081527,3081129,3077031	
chr2	3076080	3084065	3077031	3083951	-	Cre02.g095053.t2.1	Cre02.g095053.t2.1		3083933,3083515,3082813,3082504,3082169,3081734,3081314,3077309,3076080	3084065,3083748,3083025,3082571,3082328,3081964,3081527,3081129,3077031	
chr2	3084120	3088585	3084220	3088073	-	Cre02.g095054.t1.1	Cre02.g095054.t1.1		3087959,3087690,3087359,3087148,3086931,3086638,3086305,3085942,3085508,3085246,3085006,3084349,3084120	3088585,3087838,3087470,3087235,3086998,3086767,3086385,3086099,3085693,3085331,3085083,3084857,3084220	
chr2	3084450	3088585	3084857	3088073	-	Cre02.g095054.t2.1	Cre02.g095054.t2.1		3087959,3087690,3087359,3087148,3086931,3086638,3086305,3085942,3085508,3085246,3085006,3084450	3088585,3087838,3087470,3087235,3086998,3086767,3086385,3086099,3085693,3085331,3085083,3084857	
chr2	3084450	3088585	3084857	3088140	-	Cre02.g095054.t3.1	Cre02.g095054.t3.1		3087994,3087802,3087690,3087359,3087148,3086931,3086638,3086305,3085942,3085508,3085246,3085006,3084450	3088585,3087838,3087721,3087470,3087235,3086998,3086767,3086385,3086099,3085693,3085331,3085083,3084857	
chr2	3089670	3098925	3090495	3098769	-	Cre02.g095055.t1.1	Cre02.g095055.t1.1		3098505,3098250,3097963,3097605,3097418,3097105,3096803,3095958,3095427,3094952,3094290,3093424,3093006,3092780,3091975,3091734,3090773,3089670	3098925,3098435,3098091,3097826,3097472,3097274,3096970,3096470,3095825,3095302,3094598,3093744,3093284,3092914,3092613,3091871,3091571,3090495	
chr2	3099620	3101785	3100402	3100929	-	Cre02.g095056.t1.1	Cre02.g095056.t1.1		3101461,3100854,3100583,3099620	3101785,3100970,3100710,3100439	
chr2	3103735	3105465	3104406	3105435	-	CSB13	Cre02.g095057.t1.1		3104874,3104645,3103735	3105465,3104755,3104529	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	3105520	3116695	3105603	3116138	-	Cre02.g095058.t1.1	Cre02.g095058.t1.1		3116272,3116015,3115728,3115370,3115183,3114870,3114568,3113723,3113087,3112575,3112103,3111140,3110748,3110158,3109398,3106031,3105520	3116695,3116200,3115856,3115591,3115237,3115039,3114735,3114235,3113443,3112937,3112462,3111547,3110996,3110301,3110018,3106168,3105903	
chr2	3117562	3125285	3118400	3124652	-	Cre02.g095059.t1.1	Cre02.g095059.t1.1		3125039,3124475,3124015,3123672,3123408,3123011,3122564,3118870,3117562	3125285,3124660,3124191,3123742,3123486,3123235,3122798,3122365,3118400	
chr2	3128330	3138065	3129155	3132975	-	Cre02.g095060.t1.1	Cre02.g095060.t1.1		3137806,3133362,3132798,3132338,3131995,3131731,3131334,3130887,3129965,3128330	3138065,3133429,3132983,3132514,3132065,3131809,3131558,3131121,3130688,3129699	
chr2	3138112	3140635	3138584	3140449	-	Cre02.g095061.t1.1	Cre02.g095061.t1.1		3140336,3139959,3139599,3138847,3138112	3140635,3140034,3139803,3139011,3138676	
chr2	3143206	3147137	3143295	3146311	+	Cre02.g095062.t1.1	Cre02.g095062.t1.1		3143206,3145657	3145371,3147137	
chr2	3147251	3153865	3148161	3153121	-	Cre02.g095063.t1.1	Cre02.g095063.t1.1		3153699,3153510,3152944,3152485,3152151,3151887,3151468,3151011,3147251	3153865,3153577,3153129,3152661,3152221,3151965,3151692,3151242,3150797	
chr2	3153920	3156335	3154247	3156075	-	Cre02.g095064.t1.1	Cre02.g095064.t1.1		3155962,3155565,3155181,3154484,3153920	3156335,3155640,3155409,3154617,3154289	
chr2	3156436	3160367	3156511	3159527	+	Cre02.g095065.t1.1	Cre02.g095065.t1.1		3156436,3158873	3158587,3160367	
chr2	3160370	3169205	3161386	3169090	-	Cre02.g095066.t1.1	Cre02.g095066.t1.1		3168977,3168486,3168127,3167375,3167139,3167028,3166491,3166134,3165675,3165332,3165068,3164671,3164224,3162815,3160370	3169205,3168561,3168331,3167557,3167226,3167055,3166558,3166167,3165851,3165402,3165146,3164895,3164458,3164025,3162721	
chr2	3169376	3173377	3169527	3172572	+	Cre02.g095067.t1.1	Cre02.g095067.t1.1		3169376,3171897	3171612,3173377	
chr2	3173491	3194275	3174044	3193827	-	Cre02.g095068.t1.1	Cre02.g095068.t1.1		3192830,3192253,3191842,3191414,3190967,3190606,3190327,3189781,3189476,3189022,3188580,3188124,3187777,3187313,3186843,3186451,3186076,3185712,3185030,3184715,3184310,3183810,3183372,3182778,3182327,3181898,3181642,3181015,3180551,3180048,3179578,3179059,3178644,3178428,3177826,3177323,3176797,3176278,3175863,3175634,3173491	3194275,3192406,3192064,3191540,3191100,3190664,3190428,3189892,3189546,3189095,3188662,3188231,3187851,3187375,3186934,3186552,3186124,3185866,3185191,3184805,3184435,3183896,3183482,3182849,3182387,3182003,3181688,3181124,3180755,3180212,3179739,3179253,3178827,3178515,3178030,3177487,3176958,3176472,3176046,3175734,3175441	
chr2	3194471	3197644	3195115	3197486	-	Cre02.g095069.t1.1	Cre02.g095069.t1.1		3197471,3197090,3196592,3196024,3195510,3194471	3197644,3197134,3196705,3196079,3195606,3195175	
chr2	3197785	3201206	3197881	3200176	+	SRP19	Cre02.g095070.t1.1		3197785,3197988,3198143,3199022,3199985	3197899,3198063,3198213,3199118,3201206	Conserved Hypothetical Protein. Similar to the SRP19 subunit of the Signal Recognition Particle. Involved in ER protein translocation.
chr2	3201231	3210704	3201884	3210610	-	Cre02.g095071.t1.1	Cre02.g095071.t1.1		3210140,3209576,3209253,3208810,3208317,3208033,3207617,3207174,3206570,3206072,3205583,3205185,3204379,3203746,3203297,3202762,3201231	3210704,3209861,3209374,3208963,3208391,3208110,3207703,3207263,3206656,3206176,3205732,3205317,3204520,3203824,3203527,3202881,3202313	
chr2	3210816	3213430	3210934	3212690	+	FAP144	Cre02.g095072.t1.1		3210816,3211168,3211709,3212142,3212633	3211058,3211274,3211792,3212204,3213430	
chr2	3213835	3216614	3215175	3216501	-	Cre02.g095073.t1.1	Cre02.g095073.t1.1		3216329,3213835	3216614,3216053	
chr2	3218035	3232706	3218241	3232171	+	VPS11	Cre02.g095074.t1.1		3218035,3218765,3219467,3220183,3220659,3221000,3221451,3221874,3222468,3222753,3223515,3224231,3224507,3225023,3225687,3225995,3226402,3226929,3227414,3227767,3228293,3228776,3229426,3229769,3230026,3230456,3231158,3231964	3218454,3219010,3219704,3220281,3220735,3221086,3221546,3222135,3222520,3222896,3223649,3224287,3224842,3225187,3225778,3226098,3226590,3227092,3227545,3227992,3228377,3228871,3229525,3229822,3230124,3230536,3231319,3232706	Hypothetical Conserved Protein. Similar to VPS11 (vacuolar protein sorting-associated protein 11)-type proteins.  Matsuo et al.'s (2008) roc12 (rhythm of chloroplast) circadian rhythm mutant locus maps here; this mutant exhibits a low-amplitude rhythm phe
chr2	3232925	3235778	3233636	3234528	+	Cre02.g095075.t1.1	Cre02.g095075.t1.1		3232925,3234511	3234111,3235778	
chr2	3237545	3242244	3238404	3241908	-	MFT10	Cre02.g095076.t1.1		3241526,3241045,3240607,3239886,3239555,3239098,3237545	3242244,3241265,3240733,3240347,3239621,3239326,3238821	Matsuo et al.'s (2008) roc39 (rhythm of chloroplast) circadian rhythm mutant locus maps here
chr2	3242614	3248114	3244276	3247965	-	Cre02.g095077.t1.1	Cre02.g095077.t1.1		3247657,3247316,3246986,3246580,3245986,3245631,3245195,3244918,3242614	3248114,3247431,3247031,3246749,3246101,3245696,3245323,3245001,3244429	
chr2	3249289	3252694	3250535	3252577	-	Cre02.g095078.t1.1	Cre02.g095078.t1.1		3252480,3249289	3252694,3252421	
chr2	3255429	3259274	3257131	3259149	-	Cre02.g095079.t1.1	Cre02.g095079.t1.1		3259052,3255429	3259274,3258993	
chr2	3260123	3270144	3260828	3269904	-	Cre02.g095080.t1.1	Cre02.g095080.t1.1		3269781,3269398,3268620,3268296,3267774,3267392,3266878,3266325,3265950,3265488,3265302,3264748,3264379,3263906,3263536,3263275,3262735,3262226,3261876,3261402,3260123	3270144,3269458,3268699,3268388,3267876,3267462,3267006,3266474,3266024,3265604,3265349,3264852,3264459,3263978,3263621,3263367,3262833,3262300,3261977,3261487,3260919	
chr2	3270644	3282354	3271008	3282236	-	Cre02.g095081.t1.1	Cre02.g095081.t1.1		3281954,3281410,3281075,3280616,3280202,3279649,3279339,3278660,3278182,3277690,3277153,3276653,3276272,3273948,3273549,3272979,3272577,3272285,3271831,3270644	3282354,3281586,3281145,3280727,3280305,3279728,3279424,3278836,3278277,3277914,3277251,3276797,3276345,3275876,3273647,3273123,3272716,3272350,3271971,3271653	
chr2	3270644	3282354	3271008	3282236	-	Cre02.g095081.t2.1	Cre02.g095081.t2.1		3281954,3281410,3281075,3280616,3280202,3279649,3279339,3278660,3278182,3277690,3277153,3276653,3276272,3273948,3273549,3272979,3272577,3271831,3270644	3282354,3281586,3281145,3280727,3280305,3279728,3279424,3278836,3278277,3277914,3277251,3276797,3276345,3275876,3273647,3273123,3272716,3271971,3271653	
chr2	3282475	3293573	3282572	3292538	+	Cre02.g095082.t1.1	Cre02.g095082.t1.1		3282475,3282720,3283512,3283810,3284251,3284817,3285188,3285477,3285885,3286096,3286479,3286923,3287438,3287891,3288415,3288930,3289485,3290008,3290886,3291307,3291819,3292478	3282614,3282814,3283560,3283974,3284388,3284891,3285334,3285665,3285913,3286171,3286646,3287216,3287567,3287996,3288497,3289045,3289638,3290072,3290954,3291384,3292061,3293573	
chr2	3293679	3296704	3294637	3295918	-	Cre02.g095083.t1.1	Cre02.g095083.t1.1		3295384,3293679	3296704,3294844	
chr2	3296945	3298334	3297007	3297955	+	Cre02.g095084.t1.1	Cre02.g095084.t1.1		3296945,3297405,3297578,3297930	3297231,3297441,3297645,3298334	
chr2	3298395	3302036	3298511	3301718	+	Cre02.g095085.t1.1	Cre02.g095085.t1.1		3298395,3299414,3300147,3300516,3301265,3301706	3299139,3299462,3300261,3300595,3301379,3302036	
chr2	3302085	3307686	3302604	3306317	+	Cre02.g095086.t1.1	Cre02.g095086.t1.1		3302085,3303036,3303769,3304176,3304834,3305375,3305962	3302761,3303084,3303883,3304255,3304948,3305535,3307686	
chr2	3308258	3313916	3308583	3311866	+	Cre02.g095087.t1.1	Cre02.g095087.t1.1		3308258,3308575,3308871,3309347,3309726,3310064,3310577,3310787,3311372	3308414,3308668,3309151,3309523,3309929,3310404,3310648,3311184,3313916	null-allele mutant was isolated (PMID 29743196)
chr2	3314149	3318654	3314906	3318625	-	Cre02.g095088.t1.1	Cre02.g095088.t1.1		3316378,3315836,3314149	3318654,3316128,3315585	
chr2	3318739	3322784	3319696	3322617	-	Cre02.g095089.t1.1	Cre02.g095089.t1.1		3322560,3322357,3321844,3321551,3321149,3320790,3320367,3319987,3318739	3322784,3322434,3321894,3321614,3321208,3320843,3320471,3320044,3319754	
chr2	3322885	3329546	3323178	3326775	+	Cre02.g095090.t1.1	Cre02.g095090.t1.1		3322885,3323500,3323785,3324175,3324881,3325264,3325700,3326285,3326729	3323289,3323549,3323923,3324249,3325012,3325338,3325923,3326386,3329546	
chr2	3329595	3336096	3330098	3334661	+	Cre02.g095091.t1.1	Cre02.g095091.t1.1		3329595,3332384,3332688,3332914,3333493,3334196,3334615	3332072,3332440,3332737,3333052,3333869,3334297,3336096	
chr2	3336147	3340314	3337931	3340194	-	PSY1	Cre02.g095092.t1.1		3339768,3339427,3338822,3338352,3336147	3340314,3339687,3338977,3338503,3338085	Phytoene synthase (prephytoene-diphosphate synthase) (geranylgeranyl-diphosphate geranylgeranyltransferase) [PMID:15579683], putative chloroplast precursor.  Tran et al. 2009 [PMID: 19066941] included this in a comparison of PSY genes in various organisms
chr2	3340435	3342031	3340704	3341526	+	Cre02.g095093.t1.1	Cre02.g095093.t1.1		3340435,3341165,3341398	3340812,3341180,3342031	
chr2	3342079	3344534	3344217	3344386	-	Cre02.g095094.t1.1	Cre02.g095094.t1.1		3342079	3344534	
chr2	3345375	3351647	3345805	3350275	+	PHC12	Cre02.g095095.t1.1		3345375,3346180,3346513,3346900,3347292,3349275,3349570	3345825,3346259,3346543,3347075,3349132,3349364,3351647	Pherophorin-C12 (PHC12) [PMID: 16367971]; very similar to extracellular matrix protein (cell wall protein) pherophorin-C6 [Genbank entry DQ196112], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich
chr2	3351835	3355236	3352495	3355070	+	Cre02.g095096.t1.1	Cre02.g095096.t1.1		3351835,3352483,3352637,3353322	3352372,3352555,3353147,3355236	
chr2	3355306	3359024	3355823	3358894	-	FKB21	Cre02.g095097.t1.1		3358839,3358531,3358305,3358049,3357716,3357216,3357002,3356417,3355306	3359024,3358765,3358362,3358114,3357807,3357259,3357069,3356530,3355895	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); possibly targeted to thylakoid lumen but membrane-anchored; [PMID: 15701785]; linked to FKB16-8 and FKB16-6
chr2	3355306	3359024	3355823	3358647	-	FKB21	Cre02.g095097.t2.1		3358531,3358305,3358049,3357716,3357216,3357002,3356417,3355306	3359024,3358362,3358114,3357807,3357259,3357069,3356530,3355895	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); possibly targeted to thylakoid lumen but membrane-anchored; [PMID: 15701785]; linked to FKB16-8 and FKB16-6
chr2	3359262	3361212	3359442	3360734	+	Cre02.g095098.t1.1	Cre02.g095098.t1.1		3359262,3359911,3360226,3360569	3359560,3360011,3360285,3361212	
chr2	3361279	3369761	3361656	3369462	-	Cre02.g095099.t1.1	Cre02.g095099.t1.1		3369438,3368157,3367310,3366382,3365686,3365401,3365010,3364692,3364383,3364155,3362481,3361279	3369761,3369146,3367982,3367185,3366170,3365487,3365132,3364795,3364459,3364248,3363949,3362270	
chr2	3698376	3700204	3698456	3699664	+	CPLD26	Cre02.g095100.t1.1		3698376,3698623,3699056,3699493	3698468,3698751,3699181,3700204	Pyridoxamine 5'-phosphate oxidase-like protein.  Plant-lineage-and-diatoms conserved expressed protein.  Previously annotated as CPLD26.  Enzymatic activity is unproven
chr2	3369912	3379373	3370107	3378525	+	Cre02.g095101.t1.1	Cre02.g095101.t1.1		3369912,3370905,3371254,3371538,3371782,3371983,3372306,3372715,3373035,3374623,3374922,3375329,3376891,3377274	3370514,3371040,3371373,3371648,3371852,3372160,3372576,3372896,3374409,3374748,3375193,3376516,3377052,3379373	
chr2	3379376	3386961	3380056	3386752	-	VPS5C	Cre02.g095102.t1.1		3386701,3385437,3384993,3384559,3384285,3383845,3383632,3383255,3383078,3382669,3381590,3381048,3380695,3379376	3386961,3386421,3385105,3384677,3384327,3383955,3383670,3383344,3383125,3382743,3381721,3381275,3380814,3380410	Expressed Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking.
chr2	3387082	3392975	3387378	3392144	+	Cre02.g095103.t1.1	Cre02.g095103.t1.1		3387082,3387982,3388459,3388773,3389166,3389473,3389781,3390153,3390493,3390928,3391373,3391706	3387558,3388055,3388501,3388922,3389252,3389561,3389892,3390287,3390588,3391083,3391456,3392975	null-allele mutant was isolated (PMID 29743196)
chr2	3393322	3396766	3393558	3395880	+	Cre02.g095104.t1.1	Cre02.g095104.t1.1		3393322,3393815,3395106,3395791	3393572,3394867,3395206,3396766	
chr2	3396838	3400201	3397618	3400148	-	Cre02.g095105.t1.1	Cre02.g095105.t1.1		3399764,3399351,3398802,3398221,3396838	3400201,3399433,3398886,3398329,3397749	
chr2	3400302	3404724	3400515	3403872	+	Cre02.g095106.t1.1	Cre02.g095106.t1.1		3400302,3400759,3401281,3401747,3402119,3402797,3403338,3403729	3400587,3400833,3401370,3401830,3402174,3402950,3403449,3404724	
chr2	3404743	3411961	3405718	3411855	-	Cre02.g095107.t1.1	Cre02.g095107.t1.1		3411849,3411103,3407156,3406869,3406480,3406075,3404743	3411961,3411235,3407331,3406965,3406560,3406208,3405880	
chr2	3412122	3413273	3412215	3413247	+	Cre02.g095108.t1.1	Cre02.g095108.t1.1		3412122,3412532	3412256,3413273	
chr2	3413286	3414831	3413439	3414260	-	Cre02.g095109.t1.1	Cre02.g095109.t1.1		3414438,3414103,3413848,3413516,3413286	3414831,3414304,3413915,3413575,3413442	
chr2	3414942	3416215	3415077	3415484	+	FAP255	Cre02.g095110.t1.1		3414942,3415365	3415264,3416215	
chr2	3414942	3416215	3415077	3415365	+	FAP255	Cre02.g095110.t2.1		3414942,3415365	3415288,3416215	
chr2	3416950	3427161	3417388	3427080	-	Cre02.g095111.t1.1	Cre02.g095111.t1.1		3426901,3426714,3426310,3425935,3425321,3425006,3424619,3424298,3423883,3423535,3423190,3422676,3422156,3421822,3421179,3420826,3420547,3420085,3419787,3419489,3419026,3418671,3418346,3416950	3427161,3426813,3426382,3426008,3425391,3425093,3424666,3424372,3423912,3423615,3423276,3422763,3422349,3421887,3421348,3420907,3420594,3420167,3419876,3419563,3419128,3418734,3418491,3417913	
chr2	3427216	3429471	3427787	3429335	-	Cre02.g095112.t1.1	Cre02.g095112.t1.1		3429206,3428917,3428377,3427216	3429471,3428955,3428472,3427877	
chr2	3429836	3436111	3430828	3436061	-	TFC-E	Cre02.g095113.t1.1		3435623,3435245,3434876,3434572,3433000,3432262,3431970,3431638,3431152,3429836	3436111,3435321,3434948,3434658,3433278,3432696,3432029,3431742,3431284,3430828	ts-lethal mutations mitotic spindle formation (PMID 25336509)
chr2	3436309	3441481	3437305	3441404	-	Cre02.g095114.t1.1	Cre02.g095114.t1.1		3441094,3440720,3440430,3440022,3439558,3439054,3438480,3436309	3441481,3440763,3440486,3440099,3439692,3439134,3438640,3437876	
chr2	3442406	3449151	3443299	3448754	-	Cre02.g095115.t1.1	Cre02.g095115.t1.1		3448291,3447766,3447253,3446837,3446329,3445885,3445220,3444667,3444250,3443863,3442406	3449151,3447910,3447340,3446954,3446455,3445935,3445307,3444741,3444363,3443955,3443371	
chr2	3449332	3457628	3449588	3457105	+	Cre02.g095116.t1.1	Cre02.g095116.t1.1		3449332,3449696,3449986,3450188,3450664,3451217,3451508,3452197,3452475,3452739,3453729,3454102,3456607,3457018	3449634,3449748,3450058,3450348,3450963,3451287,3452051,3452304,3452598,3453403,3453809,3456327,3456684,3457628	
chr2	3458262	3463413	3458480	3462260	+	Cre02.g095117.t1.1	Cre02.g095117.t1.1		3458262,3458837,3459071,3459310,3459628,3459835,3460243,3460439,3460582,3460739,3460906,3461139,3461386,3461705,3461960	3458706,3458886,3459194,3459330,3459705,3460161,3460340,3460502,3460658,3460807,3461057,3461213,3461592,3461729,3463413	
chr2	3458262	3463413	3459860	3462260	+	Cre02.g095117.t2.1	Cre02.g095117.t2.1		3458262,3458837,3459171,3459310,3459673,3459835,3460243,3460439,3460582,3460739,3460906,3461139,3461386,3461705,3461960	3458706,3458878,3459194,3459330,3459705,3460161,3460340,3460502,3460658,3460807,3461057,3461213,3461592,3461729,3463413	
chr2	3464171	3464971	3464310	3464619	-	Cre02.g095118.t1.1	Cre02.g095118.t1.1		3464561,3464171	3464971,3464465	
chr2	3465059	3470331	3465510	3470288	-	Cre02.g095119.t1.1	Cre02.g095119.t1.1		3470255,3467456,3465059	3470331,3470183,3467222	null-allele mutant was isolated (PMID 29743196)
chr2	3470396	3475651	3471158	3475056	-	ANK18	Cre02.g095120.t1.1		3474768,3474467,3474077,3473805,3473424,3473025,3472713,3470396	3475651,3474565,3474175,3473900,3473522,3473243,3472811,3472244	Protein of unknown function with ankyrin repeats
chr2	3470396	3475631	3471158	3474563	-	ANK18	Cre02.g095120.t2.1		3474835,3474467,3474077,3473805,3473424,3473025,3472713,3470396	3475631,3474565,3474175,3473900,3473522,3473243,3472811,3472244	Protein of unknown function with ankyrin repeats
chr2	3477092	3482473	3477537	3482005	+	PUS9	Cre02.g095121.t1.1		3477092,3478251,3479001,3479441,3480106,3480949,3481405,3481803	3477843,3478658,3479102,3479519,3480221,3481041,3481508,3482473	
chr2	3482887	3487296	3483384	3487064	-	FKB16-8	Cre02.g095122.t1.1		3486998,3486660,3486298,3485846,3485616,3484316,3484042,3482887	3487296,3486673,3486374,3485895,3485675,3484361,3484156,3483517	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); localization unsure; linked to FKB17-2 and FKB16-6
chr2	3487802	3492863	3488141	3491217	+	Cre02.g095123.t1.1	Cre02.g095123.t1.1		3487802,3488572	3488268,3492863	
chr2	3493172	3498743	3493366	3498198	+	Cre02.g095124.t1.1	Cre02.g095124.t1.1		3493172,3493469,3496546	3493399,3496136,3498743	
chr2	3499742	3518843	3500020	3518055	+	Cre02.g095125.t1.1	Cre02.g095125.t1.1		3499742,3500938,3501637,3503020,3503373,3503872,3504318,3504894,3505337,3506183,3506717,3507061,3507430,3507741,3508071,3508528,3508897,3509535,3510028,3510510,3511075,3511392,3511898,3512187,3512688,3513209,3513472,3513937,3514222,3514483,3514881,3515265,3515668,3516044,3517140	3500122,3501011,3501755,3503115,3503461,3503951,3504364,3504948,3505414,3506284,3506840,3507226,3507488,3507855,3508116,3508678,3509347,3509671,3510162,3510773,3511212,3511683,3511989,3512327,3512836,3513272,3513618,3514001,3514264,3514548,3514987,3515367,3515852,3516755,3518843	null-allele passenger mutation was isolated (PMID 29743196)
chr2	3519121	3533871	3521325	3533687	-	DPE2	Cre02.g095126.t1.1		3533465,3533248,3532745,3532223,3531697,3531394,3531060,3530430,3529852,3529520,3528987,3528630,3528330,3527894,3527454,3526971,3526327,3525826,3525129,3524583,3524298,3523689,3523233,3522764,3522268,3519121	3533871,3533358,3532828,3532318,3531796,3531497,3531145,3530549,3529963,3529585,3529070,3528749,3528428,3527961,3527581,3527138,3526441,3525897,3525299,3524672,3524352,3523760,3523366,3522917,3522424,3521738	transfers mostly maltosyl residues from a donor oligosaccharide to the nonreducing end of an acceptor; probable cytosolic isoform.
chr2	3534322	3540833	3534525	3540300	+	Cre02.g095127.t1.1	Cre02.g095127.t1.1		3534322,3535389,3535737,3536275,3536946,3537248,3537441,3538453,3538922,3539269,3539855,3539988,3540225	3535146,3535443,3535840,3536391,3537028,3537278,3537509,3538628,3538992,3539414,3539908,3540038,3540833	
chr2	3541073	3545801	3541650	3545702	-	Cre02.g095128.t1.1	Cre02.g095128.t1.1		3545574,3544602,3544110,3543761,3543112,3542853,3542364,3541956,3541073	3545801,3545418,3544223,3543865,3543180,3542921,3542567,3542062,3541702	
chr2	3546432	3556109	3546731	3554889	+	Cre02.g095129.t1.1	Cre02.g095129.t1.1		3546432,3547417,3547784,3548354,3549052,3551441,3551812,3552323,3552674,3553223,3553543,3554040,3554682	3546899,3547482,3547930,3548639,3550898,3551557,3551907,3552424,3552805,3553277,3553640,3554204,3556109	
chr2	3557586	3563450	3557818	3561853	+	Cre02.g095130.t1.1	Cre02.g095130.t1.1		3557586,3558293,3558720,3559001,3559588,3560413,3561166,3561460	3557882,3558513,3558808,3559192,3559669,3560766,3561303,3563450	
chr2	3563776	3566567	3564230	3566370	+	Cre02.g095131.t1.1	Cre02.g095131.t1.1		3563776	3566567	
chr2	3566626	3571442	3566804	3570049	+	Cre02.g095132.t1.1	Cre02.g095132.t1.1		3566626,3566757,3567214	3566643,3566846,3571442	
chr2	3571720	3575635	3572348	3575517	-	Cre02.g095133.t1.1	Cre02.g095133.t1.1		3575369,3575173,3574150,3573605,3573222,3572821,3571720	3575635,3575237,3574256,3573822,3573367,3573000,3572429	
chr2	3576206	3580263	3576304	3578692	+	Cre02.g095134.t1.1	Cre02.g095134.t1.1		3576206,3576463,3576667,3577313,3577783,3578210,3578503	3576369,3576566,3576971,3577417,3577947,3578266,3580263	
chr2	3580656	3586876	3580700	3586558	+	Cre02.g095135.t1.1	Cre02.g095135.t1.1		3580656,3580976,3581809,3582371,3582867,3583325,3583967,3584511,3585724,3586174,3586486	3580853,3581281,3582059,3582605,3582931,3583586,3584308,3585089,3585762,3586239,3586876	
chr2	3586926	3591457	3587160	3591282	+	Cre02.g095136.t1.1	Cre02.g095136.t1.1		3586926,3587451,3588187,3588421,3588869,3589749,3590036,3590456,3591117	3587166,3587906,3588260,3588694,3589477,3589802,3590099,3590706,3591457	
chr2	3591546	3600340	3592528	3599531	+	Cre02.g095137.t1.1	Cre02.g095137.t1.1		3591546,3592511,3592985,3593593,3594382,3595014,3595447,3595839,3597443,3598019,3598294,3598749,3599036,3599395	3592277,3592614,3593198,3593982,3594735,3595169,3595619,3597298,3597832,3598158,3598539,3598852,3599224,3600340	
chr2	3591546	3600340	3592528	3599531	+	Cre02.g095137.t2.1	Cre02.g095137.t2.1		3591546,3592511,3592985,3593593,3594382,3595014,3595447,3595839,3597481,3598019,3598294,3598749,3599036,3599395	3592277,3592614,3593198,3593982,3594735,3595169,3595619,3597282,3597832,3598158,3598539,3598852,3599224,3600340	
chr2	3600350	3604415	3600438	3604220	-	Cre02.g095138.t1.1	Cre02.g095138.t1.1		3604019,3603601,3602730,3602094,3601778,3600974,3600350	3604415,3603698,3603162,3602455,3601845,3601425,3600729	
chr2	3604546	3607977	3604754	3607788	+	Cre02.g095139.t1.1	Cre02.g095139.t1.1		3604546,3605665,3606242,3607153,3607620	3605465,3605887,3606513,3607254,3607977	
chr2	3608106	3609894	3608442	3608981	+	Cre02.g095140.t1.1	Cre02.g095140.t1.1		3608106,3608981	3608706,3609894	
chr2	3610336	3619368	3610570	3618496	+	Cre02.g095141.t1.1	Cre02.g095141.t1.1		3610336,3611671,3612341,3612913,3613128,3614319,3614730,3615247,3615911,3616577,3617427,3617999,3618361	3611018,3611698,3612443,3612957,3613523,3614504,3615074,3615328,3615984,3616975,3617540,3618136,3619368	
chr2	3619476	3625507	3619526	3625266	+	Cre02.g095142.t1.1	Cre02.g095142.t1.1		3619476,3623212,3623710	3622851,3623388,3625507	
chr2	3625540	3631525	3625928	3631490	-	Cre02.g095143.t1.1	Cre02.g095143.t1.1		3631487,3631194,3628498,3627250,3625540	3631525,3631367,3630973,3628055,3626993	
chr2	3632056	3637267	3632720	3635313	+	Cre02.g095144.t1.1	Cre02.g095144.t1.1		3632056,3632698	3632394,3637267	
chr2	3637280	3640495	3638134	3640370	-	Cre02.g095145.t1.1	Cre02.g095145.t1.1		3640331,3639880,3639599,3639139,3638682,3637280	3640495,3640050,3639656,3639257,3638757,3638424	
chr2	3640559	3644515	3641068	3644421	-	Cre02.g095146.t1.1	Cre02.g095146.t1.1		3644010,3643503,3643263,3642840,3642443,3641325,3640559	3644515,3643613,3643335,3642940,3642490,3641411,3641095	
chr2	3644570	3647045	3644883	3646915	-	ALG2	Cre02.g095147.t1.1		3646190,3645590,3644570	3647045,3645856,3645307	Glycosyltransferase, group 1; mannosyltransferase
chr2	3647166	3650217	3647289	3649930	+	Cre02.g095148.t1.1	Cre02.g095148.t1.1		3647166,3647910,3648166,3648617,3648948,3649275,3649672	3647685,3647972,3648297,3648726,3649104,3649406,3650217	
chr2	3650306	3654147	3650512	3653261	+	FAP143	Cre02.g095149.t1.1		3650306,3650721,3651051,3651481,3651976,3652309,3652839,3653151	3650632,3650834,3651164,3651531,3652061,3652435,3652923,3654147	
chr2	3700706	3706822	3701061	3705728	+	Cre02.g095150.t1.2	Cre02.g095150.t1.2		3700706,3701685,3702496,3704339	3701232,3701771,3704133,3706822	
chr2	3654626	3662892	3655361	3660247	+	Cre02.g095151.t1.1	Cre02.g095151.t1.1		3654626,3655256,3655902,3656201,3656497,3656794,3657076,3657344,3657877,3658419,3658704,3659181,3659701,3660060	3655063,3655625,3656048,3656302,3656601,3656877,3657183,3657664,3658200,3658490,3658914,3659444,3659809,3662892	
chr2	3663880	3666704	3665008	3666634	-	Cre02.g095152.t1.1	Cre02.g095152.t1.1		3666607,3665905,3665342,3663880	3666704,3666047,3665497,3665021	
chr2	3676741	3678175	3676933	3677384	-	Cre02.g095153.t1.1	Cre02.g095153.t1.1		3677287,3676741	3678175,3677004	
chr2	3688817	3690285	3689252	3690125	-	Cre02.g095154.t1.1	Cre02.g095154.t1.1		3690089,3688817	3690285,3689573	
chr2	3707006	3714197	3707332	3713280	+	Cre02.g095200.t1.2	Cre02.g095200.t1.2		3707006,3707758,3708202,3708636,3709102,3709474,3709754,3710074,3710481,3710857,3711080,3711410,3711906,3712284,3712702,3712918,3713151	3707413,3707928,3708261,3708782,3709324,3709571,3709942,3710169,3710627,3710964,3711217,3711781,3712112,3712429,3712790,3712973,3714197	
chr2	3714506	3749777	3715055	3749663	+	Cre02.g095250.t1.1	Cre02.g095250.t1.1		3714506,3714710,3715049,3715234,3719045,3719374,3719631,3719820,3720152,3721341,3722450,3723010,3723713,3723888,3726546,3726909,3727431,3727946,3728280,3729888,3730099,3732924,3735989,3740768,3740904,3741324,3741624,3743181,3743617,3744003,3745840,3746485,3746851,3747294,3747633,3748055,3749015	3714593,3714814,3715106,3718890,3719227,3719518,3719728,3719924,3721220,3722346,3722887,3723596,3723774,3726437,3726775,3727257,3727845,3728146,3729796,3729962,3732783,3735873,3740667,3740814,3741204,3741482,3743039,3743510,3743872,3745699,3746328,3746730,3747144,3747500,3747902,3748855,3749777	
chr2	3749826	3752347	3749863	3751726	+	Cre02.g095294.t1.2	Cre02.g095294.t1.2		3749826,3749936,3750426,3750866,3751501	3749867,3750225,3750686,3751378,3752347	
chr2	3753704	3762814	3753954	3761048	+	Cre02.g095300.t1.1	Cre02.g095300.t1.1		3753704,3754341,3754773,3755047,3755416,3755914,3756299,3756644,3756894,3757326	3753963,3754370,3754823,3755193,3755628,3756076,3756394,3756708,3757077,3762814	
chr2	3762818	3768893	3763897	3768661	-	CGL116	Cre02.g095350.t1.1		3768271,3767754,3766886,3766438,3766186,3765813,3765223,3764715,3762818	3768893,3767942,3766978,3766572,3766328,3765948,3765471,3764831,3764122	
chr2	3769099	3773753	3769627	3773570	-	Cre02.g095400.t1.2	Cre02.g095400.t1.2		3773494,3772875,3772432,3772020,3771937,3771521,3770653,3770360,3770093,3769099	3773753,3773062,3772485,3772139,3771963,3771616,3770760,3770461,3770182,3769867	
chr2	3769099	3773753	3769627	3773570	-	Cre02.g095400.t2.1	Cre02.g095400.t2.1		3773494,3772875,3772432,3772020,3771521,3770653,3770360,3770093,3769099	3773753,3773062,3772485,3772139,3771616,3770760,3770461,3770182,3769867	
chr2	3773902	3777145	3774473	3776801	+	FKB16-6	Cre02.g095450.t1.2		3773902,3774472,3775022,3775578,3776032,3776588	3774273,3774660,3775130,3775667,3776146,3777145	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); probably directed to thylakoid lumen (homology to AtFKBP16-1 and bipartite cTP: 51 + RR motif); [PMID: 15701785]; linked to FKB16-8 and FKB17-2
chr2	3777150	3785227	3777853	3784935	-	Cre02.g095500.t1.1	Cre02.g095500.t1.1		3784712,3784247,3783972,3783516,3782470,3781861,3781409,3781054,3780606,3780104,3779766,3779418,3779131,3778648,3777150	3785227,3784500,3784085,3783621,3782632,3781965,3781541,3781122,3780850,3780230,3779854,3779454,3779178,3778799,3778196	
chr2	3786046	3824563	3787005	3824320	-	Cre02.g095550.t1.1	Cre02.g095550.t1.1		3824269,3820492,3820155,3819625,3819415,3819217,3817891,3816222,3815507,3815328,3812655,3812319,3811837,3811253,3810948,3809300,3809131,3806290,3803168,3798355,3798192,3797802,3797543,3796014,3795545,3795179,3793134,3792505,3792073,3791664,3791308,3790880,3789973,3789077,3788606,3788141,3787347,3786046	3824563,3824085,3820337,3819769,3819512,3819321,3818953,3817767,3816093,3815389,3815213,3812548,3812185,3811667,3811148,3810816,3809205,3808965,3806153,3803051,3798238,3798102,3797698,3797423,3795874,3795434,3795037,3792993,3792318,3791960,3791514,3791149,3790776,3789812,3788895,3788401,3787859,3787230	
chr2	3824828	3827573	3825815	3827534	-	Cre02.g095600.t1.2	Cre02.g095600.t1.2		3827159,3824828	3827573,3826892	
chr2	3827674	3833634	3827898	3832575	+	Cre02.g095650.t1.1	Cre02.g095650.t1.1		3827674,3828419,3828790,3829201,3829767,3830156,3830414,3830825,3831034,3831295,3831899,3832392	3828144,3828522,3828904,3829273,3829849,3830242,3830554,3830915,3831087,3831440,3832042,3833634	
chr2	3834233	3838003	3834907	3837889	-	Cre02.g095700.t1.2	Cre02.g095700.t1.2		3837833,3837593,3837201,3836743,3836212,3835842,3835504,3834233	3838003,3837708,3837352,3836942,3836341,3835982,3835667,3835124	
chr2	3838134	3844655	3838236	3843761	+	ZEP1	Cre02.g095750.t1.2		3838134,3838596,3839086,3839582,3840270,3841404,3841838,3842201,3842777,3843103,3843509	3838351,3838737,3839212,3839919,3840346,3841510,3842068,3842389,3842865,3843307,3844655	
chr2	3844658	3849973	3845112	3849653	-	Cre02.g095800.t1.2	Cre02.g095800.t1.2		3849812,3849151,3847502,3846982,3846534,3846016,3844658	3849973,3849676,3848655,3847101,3846707,3846129,3845562	
chr2	3850028	3853683	3850409	3853556	-	Cre02.g095850.t1.1	Cre02.g095850.t1.1		3853516,3853246,3852556,3851897,3851357,3850028	3853683,3853317,3852912,3852219,3851532,3850833	
chr2	3853823	3861273	3854928	3860988	-	ROC114	Cre02.g095900.t1.2		3860352,3859749,3859357,3859004,3858608,3858290,3858047,3855557,3855205,3853823	3861273,3859778,3859562,3859154,3858780,3858410,3858172,3857818,3855389,3855073	Thiolase with cyclin-like F box involved in circadian rhythms; in Matsuo et al. (2008), roc18 and roc114 (rhythm of chloroplast) mutant loci map here; they suggest the gene name ROC114
chr2	3861895	3874163	3862827	3873996	-	Cre02.g095950.t1.1	Cre02.g095950.t1.1		3870000,3867672,3867347,3867019,3866744,3861895	3874163,3869797,3867389,3867084,3866862,3866335	
chr2	3875484	3882449	3875613	3881675	+	Cre02.g096000.t1.1	Cre02.g096000.t1.1		3875484,3875685,3875872,3876265,3876638,3877033,3877412,3877772,3878113,3878315,3878716,3879101,3879402,3879843,3880044,3880429,3880774,3881065,3881543	3875616,3875771,3875929,3876374,3876790,3877150,3877542,3877832,3878133,3878421,3878871,3879175,3879517,3879882,3880173,3880554,3880885,3881200,3882449	
chr2	3875484	3882449	3875613	3881675	+	Cre02.g096000.t2.1	Cre02.g096000.t2.1		3875484,3875685,3875872,3876265,3876638,3877033,3877412,3877772,3878315,3878716,3879101,3879402,3879843,3880044,3880429,3880774,3881065,3881543	3875616,3875771,3875929,3876374,3876790,3877150,3877542,3877844,3878421,3878871,3879175,3879517,3879882,3880173,3880554,3880885,3881200,3882449	
chr2	3882914	3887125	3883438	3887072	+	Cre02.g096050.t1.1	Cre02.g096050.t1.1		3882914,3883687,3884503,3884809,3885350,3886031,3886365,3886670	3883486,3884090,3884578,3885101,3885629,3886093,3886457,3887125	
chr2	3887184	3892505	3887416	3890259	+	Cre02.g096100.t1.2	Cre02.g096100.t1.2		3887184,3887712,3888341,3888798,3889225,3890100	3887479,3888167,3888499,3888861,3889730,3892505	
chr2	3892614	3894846	3892739	3894172	+	MSD1	Cre02.g096150.t1.2		3892614,3893256,3893799,3894124	3893006,3893447,3893948,3894846	Superoxide dismutase [Mn], mitochondrial precursor; the name MSD1 replaces the previous designation SodA.
chr2	3895095	3900303	3895853	3899922	-	Cre02.g096200.t1.2	Cre02.g096200.t1.2		3899870,3899531,3898962,3898563,3898118,3897624,3897182,3896727,3896335,3895095	3900303,3899615,3899030,3898651,3898200,3897727,3897305,3896786,3896418,3895979	
chr2	3901968	3907383	3902393	3907036	-	FMO9	Cre02.g096250.t1.2		3906907,3906535,3906212,3905815,3905514,3905280,3904983,3904499,3904196,3903839,3903511,3903006,3901968	3907383,3906638,3906326,3905846,3905554,3905359,3905063,3904636,3904286,3903889,3903659,3903149,3902687	Flavin-containing monooxygenase. This family includes diverse enzymes that utilise FAD - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism/Energy production and conversion - this gene is about 2 kb aw
chr2	3907698	3914283	3910677	3914141	-	CCM1	Cre02.g096300.t1.1		3914031,3913706,3913273,3911607,3911097,3907698	3914283,3913925,3913490,3913035,3911167,3910729	Master regulator of CO2-responsive genes including low-CO2 inducible genes necessary for CO2-concentrating mechanism [PMID:11287669, 15235119, 11309511]; CCM1-A and CCM1-B are generated by an alternative splicing between 3rd and 4th exons, CCM1B=CIA5=698aa, CCM1A=699aa; two Zn-binding regions are located in N-terminus and its Zn-binding is indispensable for the regulation of CCM [PMID: 18202004]. Ortholog is reported in Volvox carteri [PMID: 21253860].
chr2	3907698	3914283	3910677	3914141	-	CCM1	Cre02.g096300.t2.1		3914031,3913706,3913273,3911607,3911097,3907698	3914283,3913925,3913490,3913032,3911167,3910729	Master regulator of CO2-responsive genes including low-CO2 inducible genes necessary for CO2-concentrating mechanism [PMID:11287669, 15235119, 11309511]; CCM1-A and CCM1-B are generated by an alternative splicing between 3rd and 4th exons, CCM1B=CIA5=698aa, CCM1A=699aa; two Zn-binding regions are located in N-terminus and its Zn-binding is indispensable for the regulation of CCM [PMID: 18202004]. Ortholog is reported in Volvox carteri [PMID: 21253860].
chr2	3914414	3920254	3915030	3919646	+	DAO1	Cre02.g096350.t1.1		3914414,3916589,3917024,3917415,3917870,3918519,3918988,3919391	3915565,3916703,3917081,3917630,3918076,3918610,3919111,3920254	
chr2	3920354	3927017	3920471	3926296	+	Cre02.g096400.t1.2	Cre02.g096400.t1.2		3920354,3920695,3921089,3921558,3921913,3922499,3923374,3924719,3925279,3925648,3926113	3920474,3920733,3921193,3921678,3922024,3922733,3923943,3924916,3925479,3925719,3927017	
chr2	3927042	3928203	3927553	3928175	-	Cre02.g096450.t1.1	Cre02.g096450.t1.1		3927042	3928203	
chr2	3928258	3930003	3928274	3929402	-	Cre02.g096455.t1.2	Cre02.g096455.t1.2		3929565,3929375,3928461,3928258	3930003,3929440,3929216,3928364	
chr2	3930124	3933845	3930172	3933046	+	Cre02.g096500.t1.1	Cre02.g096500.t1.1		3930124,3930429,3930841,3931200,3931692,3932098,3932555,3932823	3930362,3930746,3931036,3931439,3931891,3932388,3932663,3933845	
chr2	3930124	3933845	3930882	3933046	+	Cre02.g096500.t2.1	Cre02.g096500.t2.1		3930124,3930429,3930841,3931200,3931533,3931692,3932098,3932555,3932823	3930362,3930746,3931036,3931402,3931555,3931891,3932388,3932663,3933845	
chr2	3935510	3953805	3935883	3953490	-	Cre02.g096551.t1.1	Cre02.g096551.t1.1		3952944,3950869,3950537,3950237,3949822,3949316,3948326,3947704,3947127,3946310,3945756,3945285,3944857,3940477,3939953,3939421,3938724,3938381,3937740,3937180,3935510	3953805,3951210,3950618,3950325,3949944,3949476,3948584,3947928,3947300,3946495,3946025,3945404,3944959,3940562,3940105,3939552,3938788,3938482,3937792,3937328,3936627	May contain additional coding sequence in intronic N-island PMID: 27175017
chr2	3953926	3956935	3954026	3956660	+	Cre02.g096601.t1.1	Cre02.g096601.t1.1		3953926,3954426,3954898,3955384,3955672,3956309	3954211,3954552,3954969,3955496,3955906,3956935	
chr2	3956986	3963117	3957630	3962500	+	Cre02.g096650.t1.2	Cre02.g096650.t1.2		3956986,3957552	3957319,3963117	
chr2	3963296	3971576	3963592	3969344	+	Cre02.g096700.t1.1	Cre02.g096700.t1.1		3963296,3964215,3964767,3965287,3965887,3966682,3967168,3967696,3968194,3968663,3969095	3963805,3964326,3964896,3965394,3966406,3966760,3967374,3967886,3968313,3968746,3971576	
chr2	3973406	3975349	3973535	3974152	+	Cre02.g096737.t1.2	Cre02.g096737.t1.2		3973406,3973780,3974008	3973642,3973831,3975349	
chr2	3975360	3982195	3976453	3982002	-	Cre02.g096750.t1.2	Cre02.g096750.t1.2		3981912,3981586,3981396,3980922,3975360	3982195,3981657,3981446,3980973,3976521	
chr2	3982250	3986875	3982556	3986849	-	Cre02.g096800.t1.2	Cre02.g096800.t1.2		3986598,3986413,3984996,3984316,3983830,3983565,3982851,3982250	3986875,3986497,3986009,3984726,3983949,3983715,3983386,3982622	
chr2	3986930	3989585	3987776	3989356	-	Cre02.g096850.t1.2	Cre02.g096850.t1.2		3989051,3988349,3986930	3989585,3988490,3987854	
chr2	3989716	3994377	3989879	3994113	+	TIE1	Cre02.g096900.t1.2		3989716,3990391,3990808,3991738,3992144,3992638,3993023,3993679,3994062	3989930,3990504,3991521,3991806,3992221,3992700,3993160,3993798,3994377	
chr2	3994380	4002545	3994876	4002434	-	Cre02.g096950.t1.2	Cre02.g096950.t1.2		4001083,4000672,4000345,3998989,3998525,3998045,3997553,3997027,3996151,3995634,3994380	4002545,4000815,4000459,4000157,3998755,3998308,3997617,3997200,3996594,3995930,3995416	
chr2	4002736	4011627	4002892	4011143	+	DHP1	Cre02.g097000.t1.2		4002736,4003341,4003858,4004244,4005013,4005242,4005584,4005962,4007342,4007958,4008713,4009242,4009577,4010427,4011005	4002994,4003430,4003979,4004340,4005078,4005310,4005658,4006000,4007503,4008122,4008872,4009294,4009729,4010543,4011627	Dihydropyrimidinase/dihydropyrimidine amidohydrolase/hydantoinase
chr2	4011676	4015896	4011807	4014133	+	Cre02.g097050.t1.2	Cre02.g097050.t1.2		4011676,4012132,4012427,4012720,4012906,4013251,4013589,4013908	4011979,4012166,4012570,4012769,4013113,4013406,4013714,4015896	
chr2	4018156	4021908	4018509	4021051	+	Cre02.g097100.t1.2	Cre02.g097100.t1.2		4018156,4018894,4019215,4019621,4020136,4020504,4020850	4018714,4018928,4019408,4019828,4020294,4020629,4021908	
chr2	4022206	4026878	4022318	4025976	+	AGG5	Cre02.g097150.t1.2		4022206,4022748,4023161,4023661,4024268,4024651,4025016,4025525,4025947	4022434,4022833,4023255,4023698,4024421,4024722,4025177,4025627,4026878	Cys-rich AGG2-like membrane protein.  Resembles early zygote protein expressed within the first hour of zygote formation.
chr2	4026880	4030855	4027572	4030760	-	SRR14	Cre02.g097200.t1.1		4030712,4030508,4030201,4029809,4029469,4029070,4028738,4028457,4028142,4026880	4030855,4030600,4030281,4029855,4029628,4029165,4028785,4028525,4028209,4027888	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr2	4030910	4035455	4031689	4035429	-	Cre02.g097213.t1.2	Cre02.g097213.t1.2		4035412,4035129,4034700,4033559,4032968,4032652,4030910	4035455,4035222,4034902,4034455,4033071,4032753,4032291	
chr2	4042620	4045185	4042814	4045033	-	Cre02.g097221.t1.1	Cre02.g097221.t1.1		4044942,4044038,4043390,4042620	4045185,4044583,4043792,4043025	
chr2	4045393	4052105	4045671	4051434	-	Cre02.g097227.t1.2	Cre02.g097227.t1.2		4051856,4051302,4050774,4050303,4049843,4049222,4048655,4048224,4047898,4047255,4046785,4046516,4045393	4052105,4051630,4051034,4050364,4049984,4049413,4048947,4048312,4047970,4047436,4046987,4046611,4046184	
chr2	4052216	4064603	4052425	4063811	+	Cre02.g097250.t1.1	Cre02.g097250.t1.1		4052216,4053426,4054090,4054871,4055457,4056039,4056651,4056995,4057475,4057953,4058537,4059137,4059741,4060272,4060966,4061422,4061714,4062105,4062731,4063240,4063647	4052623,4053511,4054333,4054971,4055688,4056240,4056778,4057080,4057715,4058122,4058699,4059286,4059839,4060587,4061152,4061520,4061864,4062203,4062982,4063327,4064603	
chr2	4064706	4067447	4064995	4067424	+	Cre02.g097300.t1.1	Cre02.g097300.t1.1		4064706,4065106,4065427,4065817,4066198,4066520,4066936,4067110,4067377	4065019,4065168,4065570,4065960,4066324,4066772,4066966,4067218,4067447	
chr2	4064706	4067047	4064995	4067030	+	Cre02.g097300.t2.1	Cre02.g097300.t2.1		4064706,4065106,4065427,4065817,4066198,4066520,4066936	4065019,4065168,4065570,4065960,4066324,4066772,4067047	
chr2	4067450	4068555	4067592	4068446	-	Cre02.g097334.t2.1	Cre02.g097334.t2.1		4068358,4067965,4067450	4068555,4068254,4067721	
chr2	4067050	4068555	4067592	4068446	-	Cre02.g097334.t1.1	Cre02.g097334.t1.1		4068358,4067965,4067050	4068555,4068254,4067721	
chr2	4069253	4071505	4070093	4071435	-	EIF5A	Cre02.g097400.t1.2		4071312,4071096,4070878,4070623,4070297,4069253	4071505,4071218,4070934,4070760,4070329,4070117	putative eukaryotic initiation factor 5A-3 (eIF-5A); Found in the flagellar proteome [PMID: 15998802]
chr2	4071626	4073877	4071959	4072840	+	Cre02.g097450.t1.2	Cre02.g097450.t1.2		4071626,4072129,4072473,4072814	4071995,4072241,4072636,4073877	
chr2	4073946	4083663	4074517	4082183	+	Cre02.g097500.t1.1	Cre02.g097500.t1.1		4073946,4074868,4075410,4076108,4076361,4076664,4077047,4077466,4077849,4078532,4078915,4079279,4079643,4080607,4080993,4081610,4081967	4074628,4075053,4075836,4076232,4076511,4076737,4077184,4077654,4078308,4078654,4079032,4079365,4080347,4080765,4081279,4081704,4083663	null-allele passenger mutation was isolated (PMID 29743196)
chr2	4083750	4087647	4084894	4087618	-	Cre02.g097550.t1.2	Cre02.g097550.t1.2		4087435,4087154,4086842,4086472,4085941,4085388,4083750	4087647,4087215,4086983,4086591,4086105,4085501,4084999	
chr2	4087700	4095285	4088294	4095101	-	Cre02.g097600.t1.1	Cre02.g097600.t1.1		4095067,4094459,4094142,4093731,4093394,4093051,4092557,4092075,4091740,4091530,4091288,4091046,4090698,4090308,4089905,4089463,4088993,4088556,4087700	4095285,4094922,4094258,4093798,4093508,4093113,4092747,4092359,4091791,4091610,4091384,4091083,4090800,4090372,4090008,4089496,4089151,4088651,4088375	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr2	4095396	4100862	4095536	4100403	+	RPN6	Cre02.g097650.t1.2		4095396,4096155,4096753,4097006,4097624,4098012,4098346,4098773,4099353,4099789,4100232	4095851,4096253,4096790,4097076,4097724,4098128,4098403,4098876,4099448,4099884,4100862	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN6 (subunit 9) (PSD11) (PSMD11)
chr2	4110306	4117464	4110509	4116581	+	HLA3	Cre02.g097800.t1.1		4110306,4110724,4110929,4111215,4111502,4111935,4112333,4112780,4113071,4113613,4114690,4115943,4116419	4110609,4110785,4111032,4111292,4111765,4112178,4112630,4112886,4113411,4114480,4115715,4116266,4117464	associated with bicarbonate uptake for CO2-cocentrating mechanism [PMID:19321421, 25660294, 26015566]; high light-induced, requiring both high light and low CO2 (ambient) levels for activation [PMID: 12000678]; MRP subfamily of ABC transporters [PMID: 15710683]; HLA3 is regulated by CCM1 [PMID: 15235119]; localized at plasma membrane [PMID: 15710683]
chr2	4117880	4123145	4118336	4123108	-	Cre02.g097850.t1.1	Cre02.g097850.t1.1		4120093,4119676,4119223,4117880	4123145,4119938,4119407,4118806	
chr2	4123256	4129658	4123321	4128736	+	AST3	Cre02.g097900.t1.2		4123256,4124058,4124613,4125103,4125634,4126307,4126784,4127449,4127829,4128607	4123354,4124261,4124735,4125269,4125725,4126416,4126939,4127565,4127984,4129658	Putative aspartate aminotransferase (EC 2.6.1.1); predicted by Target-P as mitochondrial; predicted as plastidic by homology
chr2	4129786	4135082	4129905	4133924	+	Cre02.g097950.t1.2	Cre02.g097950.t1.2		4129786,4130350,4132257,4133878	4130037,4132083,4133680,4135082	
chr2	4135090	4140095	4135649	4139854	-	EBM2	Cre02.g098000.t1.2		4139660,4139387,4139106,4138745,4138406,4138009,4137587,4137210,4136959,4136635,4136180,4135090	4140095,4139447,4139153,4138854,4138458,4138148,4137755,4137301,4137024,4136711,4136314,4136016	
chr2	4142501	4148235	4143484	4148180	-	Cre02.g098050.t1.2	Cre02.g098050.t1.2		4147709,4147353,4146968,4146529,4146302,4145894,4144848,4144197,4143877,4142501	4148235,4147448,4147066,4146616,4146334,4146039,4145470,4144248,4143954,4143655	null-allele mutant was isolated (PMID 29743196)
chr2	4148300	4152195	4148660	4151594	-	Cre02.g098100.t1.2	Cre02.g098100.t1.2		4151922,4151482,4150989,4150560,4150237,4149816,4149474,4149106,4148300	4152195,4151627,4151230,4150701,4150328,4150012,4149632,4149226,4148735	
chr2	4152276	4156436	4152483	4156116	+	XYK1	Cre02.g098150.t1.2		4152276,4152812,4153147,4153710,4154286,4154587,4154931,4155415,4155632,4156018	4152571,4152890,4153330,4154054,4154447,4154689,4155158,4155494,4155722,4156436	
chr2	4156519	4161545	4157064	4161229	-	CGL103	Cre02.g098200.t1.1		4161092,4160779,4160408,4159785,4159477,4159051,4158645,4158123,4156519	4161545,4160927,4160604,4160204,4159654,4159285,4158732,4158370,4157761	
chr2	4161691	4165670	4161794	4165275	+	Cre02.g098250.t1.2	Cre02.g098250.t1.2		4161691,4162078,4162320,4162594,4163292,4163812,4164222,4164506,4164774,4165149	4161845,4162117,4162388,4162726,4163478,4163913,4164314,4164598,4164890,4165670	Pyridoxamine 5'-phosphate oxidase-like protein.  Enzymatic activity is unproven
chr2	4165684	4169891	4166063	4169757	-	Cre02.g098300.t1.2	Cre02.g098300.t1.2		4169133,4168779,4168406,4167953,4167666,4167367,4166991,4166740,4166417,4165684	4169891,4168931,4168537,4168116,4167747,4167510,4167173,4166814,4166529,4166238	
chr2	4170016	4175367	4170081	4175320	+	Cre02.g098350.t1.1	Cre02.g098350.t1.1		4170016,4170485,4170908,4171103,4171426,4171675,4172032,4172454,4172727,4173139,4173522,4174134,4174455,4174839	4170194,4170701,4170949,4171179,4171497,4171750,4172245,4172527,4172890,4173310,4173871,4174251,4174618,4175367	
chr2	4175370	4178292	4176087	4178218	-	Cre02.g098400.t1.2	Cre02.g098400.t1.2		4177807,4177342,4177075,4176732,4176433,4175370	4178292,4177380,4177146,4176846,4176512,4176177	
chr2	4175370	4178615	4176087	4178218	-	Cre02.g098400.t2.1	Cre02.g098400.t2.1		4178376,4177807,4177342,4177075,4176732,4176433,4175370	4178615,4178248,4177380,4177146,4176846,4176512,4176177	
chr2	4178596	4184607	4178944	4183510	+	EIF2G	Cre02.g098450.t1.2		4178596,4179081,4180600,4180959,4181362,4181804,4182117,4182834,4183276	4178977,4179159,4180796,4181189,4181537,4181915,4182287,4182989,4184607	Putative eukaryotic translation initiation factor 2 subunit 3
chr2	4184656	4189137	4184779	4187415	+	Cre02.g098500.t1.2	Cre02.g098500.t1.2		4184656,4185225,4185671,4186124,4186583,4186948	4184998,4185305,4185844,4186226,4186843,4189137	
chr2	4189140	4196635	4189651	4195715	-	Cre02.g098550.t1.1	Cre02.g098550.t1.1		4196118,4195702,4195235,4194798,4194364,4193968,4193522,4193130,4192424,4192007,4191657,4191276,4191123,4190800,4190350,4189140	4196635,4195840,4195536,4194957,4194555,4194109,4193697,4193343,4192982,4192224,4191726,4191508,4191189,4190960,4190578,4190113	
chr2	4198200	4209296	4200163	4209191	-	Cre02.g098600.t1.1	Cre02.g098600.t1.1		4209038,4208847,4208255,4207503,4206964,4206363,4205691,4204484,4203983,4203264,4202747,4202287,4201895,4201696,4201441,4201229,4201008,4200807,4198200	4209296,4208968,4208384,4207880,4207195,4206685,4206185,4205447,4204208,4203594,4202972,4202385,4202025,4201722,4201500,4201322,4201049,4200823,4200484	
chr2	4198200	4209296	4200163	4209191	-	Cre02.g098600.t2.1	Cre02.g098600.t2.1		4209038,4208847,4208255,4207503,4206964,4206363,4205691,4204484,4203983,4203264,4202747,4202287,4201895,4201696,4201441,4201229,4201008,4200807,4198200	4209296,4208968,4208384,4207880,4207195,4206685,4206185,4205447,4204208,4203594,4202972,4202385,4202016,4201722,4201500,4201322,4201049,4200823,4200484	
chr2	4209501	4214766	4210182	4214581	-	Cre02.g098650.t1.1	Cre02.g098650.t1.1		4214458,4214025,4213761,4213351,4213103,4212594,4212254,4211835,4211416,4210746,4210573,4209501	4214766,4214288,4213806,4213508,4213201,4212661,4212425,4211900,4211604,4210898,4210590,4210362	
chr2	4215037	4225568	4215559	4224353	+	Cre02.g098700.t1.2	Cre02.g098700.t1.2		4215037,4216009,4216922,4217298,4217849,4218343,4218704,4219031,4219515,4221059,4221300,4221693,4222124,4222684,4223110,4223689,4224076	4215756,4216681,4217051,4217542,4217914,4218420,4218860,4219254,4220687,4221108,4221349,4221775,4222276,4222783,4223243,4223753,4225568	
chr2	4225619	4241236	4227452	4241056	-	Cre02.g098750.t1.1	Cre02.g098750.t1.1		4240864,4238648,4238148,4237927,4237486,4236990,4236473,4235969,4235482,4234882,4234488,4234181,4233627,4229953,4225619	4241236,4240608,4238271,4238006,4237613,4237053,4236596,4236018,4235597,4235018,4234574,4234300,4233722,4233372,4229774	
chr2	4241997	4246308	4242191	4245657	+	Cre02.g098800.t1.2	Cre02.g098800.t1.2		4241997,4242676,4243016,4243345,4243571,4244104,4244568,4245163,4245582	4242214,4242865,4243051,4243393,4243698,4244259,4244714,4245270,4246308	
chr2	4246407	4252056	4247489	4251856	-	NTR2	Cre02.g098850.t1.1		4251709,4251122,4250791,4250304,4250005,4249514,4249175,4248790,4248290,4247898,4246407	4252056,4251223,4250906,4250569,4250119,4249579,4249229,4248883,4248526,4248025,4247693	NTR2 NADPH-dependent thioredoxin reductase 2, similar to AtNTRA and AtNTRB targeted to cytosol and mitochondria in Arabidopsis due to alternative initiation of transcription. Apparently no alternative initiation of trancription for this NTR in chlamy but presence of an N-terminal extension which could correspond to a transit peptide for targeting to mitochondria.
chr2	4253661	4262336	4254607	4262084	-	Cre02.g098900.t1.1	Cre02.g098900.t1.1		4260402,4260163,4259719,4259512,4259246,4253661	4262336,4260267,4260037,4259625,4259395,4259119	null-allele mutant was isolated (PMID 29743196)
chr2	4262457	4265638	4262665	4264474	+	SYP72	Cre02.g098950.t1.2		4262457,4262836,4263071,4263441,4263689,4263973,4264271	4262715,4262941,4263241,4263515,4263805,4264063,4265638	Expressed Protein. Similar to SYP7 Qc-SNAREs, involved in endosomal/cell plate trafficking; part of 2-member gene family of tandemly repeated genes (SYP71 SYP2)
chr2	4265687	4268434	4265904	4267646	+	SYP71	Cre02.g099000.t1.2		4265687,4266041,4266276,4266590,4266782,4267097,4267443	4265951,4266146,4266446,4266664,4266898,4267187,4268434	Expressed Protein. Similar to SYP7 Qc-SNAREs, involved in endosomal/cell plate trafficking; part of 2-member gene family of tandemly repeated genes (SYP71 SYP2)
chr2	4268487	4277198	4268720	4276403	+	SRR30	Cre02.g099050.t1.1		4268487,4268707,4269194,4269635,4270129,4270597,4271058,4271577,4271817,4272153,4272864,4273421,4273919,4274280,4275313,4275672,4275997,4276338	4268509,4269020,4269338,4270018,4270243,4270877,4271231,4271630,4271961,4272688,4273254,4273740,4274010,4275087,4275570,4275841,4276180,4277198	
chr2	4277267	4302680	4277450	4301964	+	Cre02.g099055.t1.2	Cre02.g099055.t1.2		4277267,4277875,4279833,4280188,4280647,4281079,4281356,4281643,4282131,4282442,4282742,4283085,4283451,4283729,4284086,4284279,4284397,4284573,4284924,4285254,4285558,4285796,4287464,4287700,4288192,4288428,4288978,4289281,4289595,4289988,4290652,4291666,4292387,4292933,4293225,4293474,4293928,4294512,4294843,4295163,4295782,4296118,4296449,4299070,4299445,4299781,4300088,4300492,4300905,4301130,4301439	4277676,4279677,4280002,4280448,4280885,4281196,4281410,4281908,4282193,4282552,4282840,4283201,4283561,4283896,4284148,4284299,4284453,4284785,4285091,4285388,4285680,4286200,4287561,4288033,4288251,4288746,4289090,4289478,4289687,4290452,4291500,4291904,4292611,4293007,4293296,4293678,4294078,4294588,4294863,4295258,4295841,4296182,4298679,4299173,4299515,4299924,4300199,4300644,4300947,4301257,4302680	null-allele mutant was isolated (PMID 29743196)
chr2	4306512	4323226	4306939	4322993	-	Cre02.g099100.t1.1	Cre02.g099100.t1.1		4322027,4321644,4320989,4320719,4320463,4319947,4318734,4318402,4317970,4317623,4317242,4316821,4314183,4313758,4313442,4312947,4312023,4311608,4310737,4309977,4309183,4308635,4307761,4307221,4306512	4323226,4321778,4321431,4320809,4320499,4320293,4319705,4318540,4318246,4317695,4317313,4316962,4314262,4313877,4313471,4313067,4312576,4311747,4310868,4310181,4309279,4308795,4307904,4307367,4307020	null-allele mutant was isolated (PMID 29743196)
chr2	4323327	4325502	4323468	4324813	+	SNAPA1	Cre02.g099150.t1.2		4323327,4324582	4324149,4325502	Adaptor protein that connects NSF to cis-SNARE complexes. Expressed Protein. Found in the flagellar proteome [PMID: 15998802]
chr2	4325552	4337926	4326859	4337804	-	Cre02.g099200.t1.1	Cre02.g099200.t1.1		4337732,4337488,4337099,4336499,4335990,4335606,4334769,4332668,4332104,4331498,4330961,4330266,4329565,4329238,4328857,4328401,4328068,4325552	4337926,4337601,4337302,4336667,4336219,4335832,4335306,4334526,4332455,4331611,4331126,4330804,4329775,4329320,4328913,4328475,4328136,4327804	
chr2	4338057	4339808	4338166	4339669	+	Cre02.g099251.t1.1	Cre02.g099251.t1.1		4338057,4339007	4338833,4339808	
chr2	4339857	4343044	4340041	4342567	+	ANK21	Cre02.g099300.t1.2		4339857,4340383,4340742,4341251,4341707,4342430	4340155,4340437,4340896,4341340,4341755,4343044	protein of unknown function with ankyrin repeats
chr2	4343211	4351726	4344413	4351597	-	SRR8	Cre02.g099350.t1.1		4351551,4351273,4350864,4350486,4349511,4349062,4348574,4348341,4347808,4347091,4346211,4345488,4343211	4351726,4351419,4350993,4350607,4350002,4349311,4348834,4348435,4347911,4347614,4346796,4345875,4345321	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr2	4351798	4360116	4352405	4359878	-	ELG31	Cre02.g099400.t1.1		4359685,4359356,4359081,4358481,4358089,4357661,4357387,4357041,4356797,4356041,4355800,4355379,4355157,4354878,4354313,4353941,4353256,4352867,4351798	4360116,4359440,4359120,4358632,4358202,4357877,4357459,4357125,4356827,4356599,4355905,4355445,4355267,4354957,4354675,4354158,4353389,4353006,4352538	putative terminal arabinosyl transferase on HRGP,  GT47 family, exostosin-like
chr2	4362405	4363926	4363247	4363458	-	Cre02.g099452.t1.1	Cre02.g099452.t1.1		4362405	4363926	
chr2	4364741	4369032	4366296	4367627	+	CVL1	Cre02.g099500.t1.1		4364741,4365176,4365488,4366282,4366698,4367155,4367366	4364903,4365278,4365576,4366536,4367011,4367206,4369032	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family
chr2	4364741	4369032	4366296	4367627	+	CVL1	Cre02.g099500.t2.1		4364741,4365176,4365488,4366282,4366698,4367155,4367366	4364903,4365292,4365576,4366536,4367011,4367206,4369032	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family
chr2	4369042	4379250	4370877	4378583	-	Cre02.g099550.t1.1	Cre02.g099550.t1.1		4378822,4378240,4377706,4376217,4374654,4373832,4373347,4372735,4372469,4372095,4369042	4379250,4378608,4377905,4377457,4376167,4374446,4373660,4373176,4372552,4372306,4371912	
chr2	4379785	4393430	4380131	4393175	-	Cre02.g099601.t1.1	Cre02.g099601.t1.1		4389269,4387092,4385689,4384640,4384307,4380641,4379785	4393430,4389016,4386036,4385562,4384404,4384006,4380335	
chr2	4394915	4399680	4395258	4399560	-	Cre02.g099650.t1.2	Cre02.g099650.t1.2		4399546,4399031,4398721,4398018,4397776,4397387,4396940,4396101,4395786,4394915	4399680,4399124,4398811,4398304,4397835,4397428,4397110,4396211,4395836,4395378	
chr2	4400377	4402412	4400518	4401920	+	Cre02.g099700.t1.2	Cre02.g099700.t1.2		4400377,4401089,4401543	4400683,4401365,4402412	null-allele mutant was isolated (PMID 29743196)
chr2	4402790	4416920	4405530	4416841	-	Cre02.g099750.t1.1	Cre02.g099750.t1.1		4416474,4416089,4415675,4409592,4407635,4407106,4406633,4406286,4405864,4402790	4416920,4416206,4415906,4415463,4409433,4407222,4406773,4406427,4405994,4405575	
chr2	4416968	4421180	4418044	4420609	-	Cre02.g099800.t1.1	Cre02.g099800.t1.1		4420924,4420488,4419845,4419300,4418730,4416968	4421180,4420623,4420156,4419521,4418818,4418311	
chr2	4421281	4428882	4421349	4427499	+	PDC2	Cre02.g099850.t1.1		4421281,4421626,4422146,4422741,4423124,4423779,4424321,4425148,4425591,4426169,4426714,4427354	4421459,4421712,4422221,4422803,4423237,4423927,4424437,4425294,4425720,4426360,4426784,4428882	pyruvate dehydrogenase (EC 1.2.4.1), E1 component alpha subunit (ODPA, PDC2_E1a). The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). [CATALYTIC ACTIVITY] Pyruvate + [dihydrolipoyllysine-residue acetyltransferase] lipoyllysine = [dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine + CO(2). [COFACTOR] Thiamine pyrophosphate. [SUBUNIT] Heterodimer of an alpha and a beta chain (By similarity). [SUBCELLULAR LOCATION] Plastid; chloroplast; This is the second PDC, localized in the plastid stroma, where it provides acetyl-CoA for fatty acid biosynthesis; different from the mitochondrial PDC
chr2	4430725	4433681	4430803	4431167	+	Cre02.g099879.t1.2	Cre02.g099879.t1.2		4430725	4433681	
chr2	4435307	4438330	4436630	4437538	-	Cre02.g099900.t1.2	Cre02.g099900.t1.2		4437756,4437234,4435307	4438330,4437578,4437160	
chr2	4438513	4442820	4439305	4442217	-	Cre02.g099950.t1.2	Cre02.g099950.t1.2		4442670,4442135,4441919,4441610,4441067,4440718,4440411,4440099,4439807,4438513	4442820,4442228,4441977,4441734,4441281,4440777,4440536,4440204,4439951,4439467	
chr2	4442875	4447323	4443813	4447187	-	RFA2	Cre02.g100000.t1.2		4447122,4446988,4446770,4446523,4446224,4445645,4445091,4444874,4444290,4442875	4447323,4447042,4446823,4446579,4446343,4445767,4445214,4444933,4444432,4443891	Replication protein A 30 kDa DNA-binding subunit; homologous to eukaryotic RPA 30 kDa subunit; RP-A; RF-A; Replication factor-A protein 2. ts-lethal mutant was isolated (PMID 29743196)
chr2	4447801	4452788	4447932	4451371	+	PFH11	Cre02.g100050.t1.2		4447801,4448139,4449461,4449940,4450355,4450728,4451112	4447978,4448906,4449637,4450010,4450480,4450831,4452788	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate
chr2	4453095	4464700	4454291	4463927	-	Cre02.g100100.t1.1	Cre02.g100100.t1.1		4464343,4461926,4461413,4460444,4460019,4458716,4453095	4464700,4464041,4461487,4461094,4460162,4459492,4458500	
chr2	4464795	4467010	4465220	4466969	-	Cre02.g100150.t1.2	Cre02.g100150.t1.2		4466768,4466519,4466102,4465477,4464795	4467010,4466635,4466203,4465502,4465220	
chr2	4467065	4468560	4467845	4468440	-	NUOP3	Cre02.g100200.t1.2		4467065	4468560	Mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 22 kDa subunit precursor, mitochondrial [AAS58502; PMID: 15710684, PMID: 15450959]; similar to At3g07480 gene product; unknown evolutionary origin
chr2	4468661	4472782	4469142	4472249	+	Cre02.g100250.t1.2	Cre02.g100250.t1.2		4468661,4469759,4470124,4470628,4471007,4471466,4472145	4469355,4469854,4470260,4470788,4471104,4471583,4472782	
chr2	4468661	4472782	4469142	4472145	+	Cre02.g100250.t2.1	Cre02.g100250.t2.1		4468661,4469759,4470124,4470628,4471007,4471466,4471762,4472145	4469355,4469854,4470260,4470788,4471104,4471583,4471830,4472782	
chr2	4472784	4478290	4474438	4477500	-	Cre02.g100300.t1.1	Cre02.g100300.t1.1		4477936,4477497,4476844,4475704,4475370,4472784	4478290,4477553,4477287,4476648,4475582,4475254	
chr2	4478345	4482630	4478752	4482598	-	Cre02.g100350.t1.2	Cre02.g100350.t1.2		4482325,4481703,4481216,4480870,4480502,4479840,4478860,4478345	4482630,4482152,4481479,4480950,4480628,4480294,4479445,4478752	
chr2	4482731	4484665	4482861	4483856	+	Cre02.g100400.t1.2	Cre02.g100400.t1.2		4482731,4482976,4483254,4483737	4482888,4483015,4483433,4484665	
chr2	4485255	4497360	4488248	4496570	-	CYG20	Cre02.g100450.t1.1		4496517,4496369,4495817,4492058,4491727,4489899,4489129,4485255	4497360,4496420,4496137,4495447,4491843,4491333,4489652,4488896	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens; closely related to nearby CYG22
chr2	4499701	4517632	4499898	4516889	+	CYG22	Cre02.g100500.t1.1		4499701,4500094,4500368,4500717,4502459,4502966,4503636,4504274,4505151,4505444,4516889	4500023,4500148,4500481,4502287,4502776,4503452,4503983,4504874,4505377,4506486,4517632	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens; closely related to nearby CYG20
chr2	4499701	4517632	4499898	4516889	+	CYG22	Cre02.g100500.t2.1		4499701,4500094,4500368,4500717,4502164,4502459,4502966,4503636,4504274,4505151,4505444,4516889	4500023,4500148,4500481,4501958,4502267,4502776,4503452,4503983,4504874,4505377,4506486,4517632	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens; closely related to nearby CYG20
chr2	4517715	4519390	4518350	4519299	-	Cre02.g100533.t1.1	Cre02.g100533.t1.1		4517715	4519390	
chr2	4519511	4520792	4519595	4519943	+	Cre02.g100566.t1.1	Cre02.g100566.t1.1		4519511,4519881	4519725,4520792	
chr2	4521521	4525632	4521568	4524761	+	Cre02.g100600.t1.1	Cre02.g100600.t1.1		4521521,4521889,4522182,4523982,4524547	4521797,4522055,4523803,4524269,4525632	
chr2	4525635	4527510	4526733	4527256	-	Cre02.g100633.t1.1	Cre02.g100633.t1.1		4525635	4527510	
chr2	4527611	4529042	4527765	4528516	+	Cre02.g100666.t1.1	Cre02.g100666.t1.1		4527611,4527963	4527815,4529042	
chr2	4529091	4533162	4529185	4532355	+	Cre02.g100700.t1.1	Cre02.g100700.t1.1		4529091,4529514,4529782,4531442,4532153	4529417,4529680,4531274,4531828,4533162	
chr2	4549143	4552098	4549329	4551841	-	Cre02.g100750.t1.2	Cre02.g100750.t1.2		4551966,4551172,4550716,4549936,4549143	4552098,4551864,4550902,4550354,4549647	
chr2	4552199	4562075	4552488	4561704	+	Cre02.g100800.t1.1	Cre02.g100800.t1.1		4552199,4552811,4553350,4553840,4554358,4554716,4555285,4555751,4556087,4557414,4557948,4558590,4559054,4559441,4559810,4560357,4561012,4561566	4552567,4552975,4553507,4553961,4554472,4554864,4555438,4555891,4557165,4557637,4558119,4558764,4559127,4559534,4559965,4560486,4561121,4562075	
chr2	4562115	4567728	4562628	4567485	-	Cre02.g100850.t1.1	Cre02.g100850.t1.1		4567462,4566695,4566224,4565825,4564506,4564093,4563717,4562984,4562115	4567728,4567252,4566386,4565906,4565577,4564213,4563894,4563135,4562682	
chr2	4568058	4568938	4568540	4568908	-	CSB14	Cre02.g100876.t1.1		4568779,4568058	4568938,4568663	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	4569049	4573430	4569168	4573349	+	Cre02.g100900.t1.2	Cre02.g100900.t1.2		4569049,4570150,4570546	4569866,4570350,4573430	
chr2	4573433	4610818	4574103	4610679	-	Cre02.g100950.t1.1	Cre02.g100950.t1.1		4608841,4608570,4606743,4605927,4605502,4605050,4604565,4603443,4602599,4601866,4601449,4601262,4600651,4600240,4599592,4599138,4598642,4597270,4596857,4596347,4595666,4595238,4594964,4594272,4593937,4593562,4593217,4592838,4592569,4591880,4590654,4590117,4589798,4589255,4588617,4588357,4587923,4587600,4586616,4586053,4585541,4585224,4584597,4584220,4583456,4582970,4581963,4581406,4580799,4579677,4579264,4578899,4578275,4577632,4577143,4576772,4576402,4575641,4573433	4610818,4608669,4607023,4606385,4605606,4605269,4604831,4604185,4603170,4602394,4601605,4601330,4601040,4600363,4599958,4599326,4598793,4598270,4597003,4596444,4596033,4595328,4595054,4594484,4594050,4593662,4593253,4592906,4592642,4592102,4591010,4590445,4589906,4589327,4589031,4588393,4588127,4587762,4587194,4586347,4585723,4585341,4584775,4584417,4583868,4583056,4582612,4581545,4580915,4580591,4579386,4579003,4578469,4577820,4577335,4576836,4576524,4575893,4575359	null-allele mutant was isolated (PMID 29743196)
chr2	4610949	4613641	4611053	4613297	+	URK1	Cre02.g101000.t1.1		4610949,4611349,4611979,4612491,4612765,4613162	4611180,4611692,4612198,4612563,4612831,4613641	
chr2	4615299	4622170	4615340	4621146	+	Cre02.g101050.t1.1	Cre02.g101050.t1.1		4615299,4615765,4616154,4616615,4617137,4617638,4618187,4618436,4619276,4619641,4620279	4615559,4615891,4616245,4616773,4617364,4617799,4618253,4618584,4619377,4619787,4622170	
chr2	4623601	4626928	4624139	4626507	-	Cre02.g101100.t1.1	Cre02.g101100.t1.1		4626663,4626390,4625929,4625492,4624958,4623601	4626928,4626560,4626090,4625591,4625148,4624352	null-allele passenger mutation was isolated (PMID 29743196)
chr2	4628423	4634338	4630129	4634081	-	Cre02.g101150.t1.2	Cre02.g101150.t1.2		4633972,4633789,4632029,4631449,4630604,4628423	4634338,4633909,4633502,4631629,4631181,4630408	
chr2	4628423	4634338	4630129	4634081	-	Cre02.g101150.t2.1	Cre02.g101150.t2.1		4633972,4633789,4632029,4631449,4630604,4628423	4634338,4633909,4633502,4631590,4631181,4630408	
chr2	4637653	4644248	4638806	4644044	-	Cre02.g101200.t1.2	Cre02.g101200.t1.2		4643912,4643786,4643312,4642645,4642225,4641879,4641227,4640860,4640458,4639966,4639639,4637653	4644248,4643818,4643623,4642762,4642361,4641962,4641411,4640941,4640631,4640063,4639708,4639241	
chr2	4644349	4651140	4644506	4650932	+	Cre02.g101250.t1.2	Cre02.g101250.t1.2		4644349,4645132,4645641,4646361,4646885,4647184,4648509,4648874,4649255,4649624,4650013,4650419	4644611,4645372,4646093,4646604,4646966,4648180,4648639,4649000,4649363,4649802,4650125,4651140	
chr2	4651189	4655210	4651253	4653496	+	Cre02.g101300.t1.2	Cre02.g101300.t1.2		4651189,4651640,4651860,4652095	4651558,4651700,4651976,4655210	
chr2	4655213	4658298	4656161	4658187	-	RPL10A	Cre02.g101350.t1.2		4658144,4657640,4657327,4655213	4658298,4657903,4657451,4656374	Cytosolic 60S large ribosomal subunit protein L10a
chr2	4658596	4671208	4658996	4670855	-	CHC1	Cre02.g101400.t1.2		4670819,4670380,4670038,4669838,4669459,4669261,4668729,4668354,4667960,4667623,4667313,4666946,4666560,4666194,4665759,4665422,4665145,4664873,4664590,4664402,4664139,4663854,4663481,4662957,4662422,4662102,4661572,4661010,4659836,4659473,4658596	4671208,4670751,4670171,4669934,4669567,4669337,4668892,4668561,4668102,4667686,4667402,4667149,4666676,4666358,4665980,4665526,4665242,4665005,4664722,4664483,4664252,4663980,4663642,4663337,4662772,4662229,4661956,4661117,4660023,4659611,4659296	Clathrin Heavy Chain, vesicle coat protein; Expressed Protein. ts-lethal mutant was isolated (PMID 29743196)
chr2	4671807	4678138	4672380	4677912	-	MRS1	Cre02.g101500.t1.2		4677789,4676856,4676445,4676135,4675768,4675515,4675178,4674785,4674542,4674190,4673749,4672680,4671807	4678138,4677605,4676492,4676254,4675857,4675604,4675252,4674862,4674625,4674309,4673925,4672850,4672494	metal ion transporter; related to plant homologs
chr2	4678193	4681228	4678622	4681091	-	Cre02.g101550.t1.1	Cre02.g101550.t1.1		4680822,4678193	4681228,4680582	
chr2	4681483	4688468	4682211	4688359	-	Cre02.g101600.t1.1	Cre02.g101600.t1.1		4687768,4686550,4685629,4685380,4684675,4684113,4683803,4682804,4681483	4688468,4687596,4686371,4685407,4685237,4684269,4683896,4683351,4682376	
chr2	4688523	4690688	4688718	4690369	-	Cre02.g101635.t1.2	Cre02.g101635.t1.2		4690090,4689715,4688523	4690688,4689743,4689529	
chr2	4690885	4693477	4691370	4692819	+	Cre02.g101650.t1.1	Cre02.g101650.t1.1		4690885,4691332,4692447	4691102,4691679,4693477	
chr2	4693553	4695117	4693976	4695058	-	Cre02.g101700.t1.1	Cre02.g101700.t1.1		4694692,4694551,4694259,4693553	4695117,4694628,4694364,4694116	
chr2	4695280	4699194	4695565	4698935	+	Cre02.g101750.t1.1	Cre02.g101750.t1.1		4695280,4695537,4695668,4696010,4696285,4696857,4697126,4697496,4697683,4697860,4698178,4698672	4695426,4695595,4695867,4696153,4696729,4696943,4697366,4697539,4697745,4698018,4698547,4699194	
chr2	4699203	4701018	4700236	4700705	-	Cre02.g101786.t1.2	Cre02.g101786.t1.2		4700870,4699203	4701018,4700787	
chr2	4701139	4703440	4701191	4703014	+	Cre02.g101800.t1.1	Cre02.g101800.t1.1		4701139,4701717,4702048,4702239,4702634,4702926	4701459,4701765,4702141,4702303,4702744,4703440	
chr2	4703444	4705888	4704141	4705725	-	Cre02.g101850.t1.2	Cre02.g101850.t1.2		4705623,4705491,4705154,4704829,4704414,4703444	4705888,4705539,4705206,4704898,4704490,4704270	
chr2	4706039	4712590	4706413	4712118	+	EXN6	Cre02.g101900.t1.1		4706039,4709395,4709888,4710327,4710969,4711239	4709131,4709644,4710018,4710464,4711070,4712590	
chr2	4712593	4719016	4712998	4718916	-	Cre02.g101950.t1.2	Cre02.g101950.t1.2		4718872,4718729,4718496,4718110,4717757,4717413,4716995,4716252,4715800,4715208,4714635,4714319,4713999,4713493,4712593	4719016,4718792,4718564,4718279,4717850,4717466,4717114,4716623,4715956,4715569,4714946,4714444,4714098,4713708,4713213	tRNA methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to position 5 of the uridine residue at position 54 of tRNAs
chr2	4719139	4721670	4719344	4721505	+	ARL5	Cre02.g102000.t1.2		4719139,4720192,4720572,4721097,4721340	4719410,4720317,4720691,4721168,4721670	Expressed Protein. Similar to ArfC-type GTPase, involved in vesicle trafficking in the late secretory system.; ARF-like 5, a member of the ARF/Sar1 GTPase family. Conserved broadly in eukaryotes (human ortholog - ARL5) but exact function to be clarified.
chr2	4721683	4727988	4723888	4727875	-	FAP328	Cre02.g102050.t1.1		4727466,4727112,4726207,4725642,4725116,4724734,4724360,4721683	4727988,4727332,4726983,4725971,4725505,4724871,4724581,4724053	Predicted protein of CSE family: belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr2	4731557	4735638	4731734	4735348	+	Cre02.g102100.t1.1	Cre02.g102100.t1.1		4731557,4732028,4732283,4732550,4732927,4733276,4733724,4734099,4734371,4734791,4735255	4731957,4732155,4732354,4732750,4733103,4733543,4733880,4734183,4734540,4735064,4735638	conserved in Volvox, Ostreococcus and bacteria
chr2	4735687	4737190	4735807	4736526	+	Cre02.g102150.t1.1	Cre02.g102150.t1.1		4735687,4736526	4736054,4737190	
chr2	4737237	4738741	4737379	4737584	+	Cre02.g102200.t1.1	Cre02.g102200.t1.1		4737237	4738741	
chr2	4738895	4740506	4739081	4740216	-	RPS3	Cre02.g102250.t1.2		4740421,4740167,4739791,4739385,4738895	4740506,4740314,4739962,4739589,4739219	Cytosolic 40S small ribosomal subunit protein S3
chr2	4740867	4742242	4741021	4741369	+	Cre02.g102276.t2.1	Cre02.g102276.t2.1		4740867,4741294	4741129,4742242	
chr2	4740601	4742242	4741021	4741369	+	Cre02.g102276.t1.1	Cre02.g102276.t1.1		4740601,4741294	4741129,4742242	
chr2	4740821	4743206	4741268	4743016	-	Cre02.g102300.t1.2	Cre02.g102300.t1.2		4742813,4742619,4742361,4742062,4741668,4741481,4740821	4743206,4742693,4742460,4742117,4741830,4741498,4741334	
chr2	4742271	4743206	4742339	4743016	-	Cre02.g102300.t2.1	Cre02.g102300.t2.1		4742813,4742619,4742271	4743206,4742693,4742460	
chr2	4743268	4746546	4743794	4746518	-	ATG3	Cre02.g102350.t1.2		4746422,4746268,4746046,4745658,4745329,4744937,4744693,4744338,4744044,4743268	4746546,4746335,4746116,4745774,4745474,4745044,4744752,4744507,4744094,4743828	E2-like enzyme; involved in autophagy; plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy
chr2	4746601	4748246	4747276	4748137	-	RPC1	Cre02.g102400.t1.2		4748097,4747951,4747591,4746601	4748246,4748027,4747678,4747401	related to transcription factor S-II
chr2	4748357	4753208	4748435	4752710	+	Cre02.g102450.t1.2	Cre02.g102450.t1.2		4748357,4748597,4748773,4749003,4749253,4749622,4749978,4750493,4750893,4751336,4751612,4751886,4752168,4752518	4748502,4748693,4748832,4749089,4749301,4749744,4750142,4750621,4750990,4751385,4751721,4751942,4752254,4753208	
chr2	4753251	4758129	4754336	4757971	-	RAD51C	Cre02.g102500.t1.1		4757832,4757585,4757241,4756991,4756681,4756392,4755980,4755692,4755431,4755132,4754697,4753251	4758129,4757671,4757363,4757024,4756751,4756477,4756087,4755739,4755475,4755218,4754766,4754497	similar to RAD51 which forms nucleoprotein filament for strand invasion; homologous to RecA ATPase
chr2	4759607	4764028	4759833	4763309	+	CSV1	Cre02.g102551.t1.1		4759607,4760400,4760892	4760324,4760692,4764028	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr2	4764247	4770111	4764517	4769692	+	Cre02.g102600.t1.1	Cre02.g102600.t1.1		4764247,4764630,4766388,4766673,4767647,4768125,4768721,4769440	4764543,4766091,4766493,4767444,4767813,4768501,4768945,4770111	
chr2	4770797	4779926	4771128	4777628	+	Cre02.g102650.t1.1	Cre02.g102650.t1.1		4770797,4771426,4774552,4774790,4776202,4776557,4776877,4777124,4777450	4771300,4774373,4774653,4776043,4776403,4776730,4777028,4777272,4779926	null-allele mutant was isolated (PMID 29743196)
chr2	4780031	4785346	4780982	4784654	-	Cre02.g102700.t1.1	Cre02.g102700.t1.1		4784497,4783971,4783610,4782064,4781771,4780031	4785346,4784235,4783757,4783374,4781843,4781596	
chr2	4786077	4791548	4786183	4791189	+	Cre02.g102750.t1.1	Cre02.g102750.t1.1		4786077,4786491,4786732,4787155,4787779,4788444,4788896,4789170,4789497,4790014,4790449,4790930	4786398,4786583,4786988,4787487,4788101,4788569,4788978,4789254,4789674,4790167,4790613,4791548	
chr2	4791551	4798566	4792215	4797656	-	Cre02.g102776.t1.1	Cre02.g102776.t1.1		4798073,4794631,4791551	4798566,4797871,4794476	
chr2	4799088	4802216	4800005	4801823	-	RPB8	Cre02.g102800.t1.2		4801964,4801778,4801466,4800704,4799088	4802216,4801857,4801543,4800799,4800119	RNA polymerase I, II and III 16.5 kDa subunit (RNA polymerase II subunit, putative)
chr2	4802317	4811438	4802581	4810855	+	Cre02.g102850.t1.1	Cre02.g102850.t1.1		4802317,4802842,4803098,4803509,4803867,4804519,4804763,4805105,4805454,4805743,4806092,4806511,4807336,4807768,4808092,4808587,4809076,4809474,4810342,4810773	4802734,4802916,4803232,4803613,4804214,4804633,4804986,4805326,4805553,4805883,4806348,4807131,4807563,4807892,4808227,4808732,4809219,4809951,4810490,4811438	
chr2	4811936	4819116	4812964	4818343	-	Cre02.g102900.t1.1	Cre02.g102900.t1.1		4815934,4814506,4814214,4813895,4813602,4813341,4811936	4819116,4815762,4814373,4814068,4813753,4813489,4813163	
chr2	4819297	4824576	4819998	4824401	-	Cre02.g102950.t1.1	Cre02.g102950.t1.1		4824293,4824082,4823653,4823441,4823097,4822754,4822403,4822163,4821931,4821648,4821432,4821134,4820943,4820608,4820395,4819297	4824576,4824226,4823951,4823520,4823238,4822846,4822473,4822252,4822006,4821719,4821502,4821224,4820978,4820730,4820462,4820194	
chr2	4824641	4830106	4825764	4829865	-	Cre02.g103000.t1.2	Cre02.g103000.t1.2		4829834,4829384,4829172,4828950,4828768,4828540,4828300,4828081,4827867,4827685,4827392,4827081,4826899,4826634,4826305,4825996,4824641	4830106,4829532,4829254,4829003,4828822,4828668,4828418,4828180,4827969,4827758,4827488,4827238,4826949,4826734,4826432,4826060,4825875	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr2	4830227	4833478	4830486	4833402	+	Cre02.g103050.t1.2	Cre02.g103050.t1.2		4830227,4830950,4831304,4831783,4832146,4832387,4832763,4833333	4830729,4831075,4831528,4831872,4832236,4832532,4832930,4833478	
chr2	4833480	4837022	4834145	4836848	-	Cre02.g103100.t1.1	Cre02.g103100.t1.1		4836650,4836339,4836082,4835732,4835386,4834992,4834449,4833480	4837022,4836389,4836165,4835840,4835567,4835062,4834663,4834267	
chr2	4837137	4840448	4837202	4839535	+	Cre02.g103150.t1.1	Cre02.g103150.t1.1		4837137,4837354,4837824,4837988,4838186,4838535,4838728,4839022,4839381	4837265,4837692,4837858,4838021,4838272,4838598,4838785,4839123,4840448	
chr2	4840727	4856088	4841121	4855368	+	Cre02.g103200.t1.1	Cre02.g103200.t1.1		4840727,4841361,4841629,4842115,4842353,4842590,4842796,4843213,4843715,4844306,4844729,4845130,4845282,4845486,4845817,4846026,4848181,4848386,4848651,4849469,4849884,4850116,4851751,4851992,4853120	4841264,4841445,4841891,4842154,4842478,4842716,4843058,4843583,4844077,4844579,4845040,4845181,4845327,4845561,4845930,4848076,4848260,4848531,4849298,4849723,4849991,4851597,4851852,4852995,4856088	null-allele mutant was isolated (PMID 29743196)
chr2	4856091	4871456	4856605	4871437	-	MRP5	Cre02.g103250.t1.1		4871380,4870670,4870305,4870014,4869425,4868927,4868374,4867984,4867558,4867029,4866095,4865765,4865097,4864780,4864363,4864079,4863891,4863563,4863251,4862539,4861870,4861394,4861011,4860723,4860409,4859959,4859567,4859306,4858981,4858678,4858338,4858058,4857754,4857462,4857063,4856091	4871456,4871078,4870384,4870090,4869515,4868994,4868449,4868114,4867684,4867181,4866597,4865885,4865624,4864879,4864499,4864144,4863950,4863679,4863325,4862871,4862355,4861611,4861103,4860791,4860476,4860127,4859653,4859447,4859064,4858821,4858414,4858116,4857794,4857582,4857244,4856875	putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683
chr2	4871505	4876316	4872028	4876016	-	CSE16	Cre02.g103300.t1.1		4875797,4875184,4874630,4874199,4873493,4873040,4872721,4872396,4871505	4876316,4875405,4874926,4874342,4873999,4873174,4872831,4872506,4872178	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr2	4876431	4883316	4876987	4883207	-	Cre02.g103350.t1.1	Cre02.g103350.t1.1		4883036,4882298,4881850,4881510,4881086,4880605,4880148,4879553,4879086,4878645,4878190,4877697,4877417,4876431	4883316,4882685,4882036,4881623,4881189,4880814,4880296,4879765,4879250,4878743,4878313,4877825,4877514,4877074	
chr2	4883401	4896956	4883622	4896878	-	OPR118	Cre02.g103400.t1.2		4896782,4896017,4895331,4894970,4894594,4894094,4893705,4893295,4892928,4892599,4891579,4890979,4890439,4889722,4889401,4888945,4888610,4888216,4887750,4887268,4886945,4886485,4886123,4885769,4885470,4885218,4884208,4883401	4896956,4896297,4895442,4895053,4894700,4894274,4893824,4893472,4893073,4892676,4891734,4891308,4890851,4890055,4889448,4889142,4888767,4888423,4888013,4887486,4887041,4886756,4886275,4885849,4885535,4885292,4885047,4883982	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr2	4897007	4899836	4898392	4899621	-	Cre02.g103426.t1.1	Cre02.g103426.t1.1		4899452,4899168,4897007	4899836,4899224,4898769	
chr2	4901659	4905852	4902396	4905654	-	Cre02.g103450.t1.1	Cre02.g103450.t1.1		4905624,4905453,4905315,4905023,4903954,4902852,4901659	4905852,4905545,4905377,4905123,4904794,4903765,4902646	
chr2	4905983	4908034	4906514	4907376	+	Cre02.g103500.t1.2	Cre02.g103500.t1.2		4905983,4906429	4906250,4908034	
chr2	4909283	4911328	4909721	4910958	-	EIF1A	Cre02.g103550.t1.2		4911215,4910643,4910189,4909283	4911328,4911075,4910291,4909729	Putative Eukaryotic translation initiation factor 1A (eIF-1A)
chr2	4911973	4918434	4912096	4918004	+	Cre02.g103600.t1.1	Cre02.g103600.t1.1		4911973,4912234,4912574,4913304,4913716,4914213,4914567,4915023,4915361,4915801,4916258,4916601,4917658,4917968	4912156,4912292,4913150,4913540,4913860,4914286,4914710,4915105,4915475,4915974,4916338,4917500,4917759,4918434	
chr2	4918437	4926882	4919063	4926805	-	Cre02.g103650.t1.1	Cre02.g103650.t1.1		4926385,4925848,4925439,4925228,4924930,4924262,4922879,4922105,4921372,4921113,4920742,4919915,4919605,4918437	4926882,4926252,4925525,4925284,4925007,4924618,4924152,4922654,4921962,4921175,4920900,4920501,4919695,4919336	
chr2	4926995	4931662	4927194	4930634	+	Cre02.g103700.t1.1	Cre02.g103700.t1.1		4926995,4927424,4927679,4928021,4928472,4928738,4929043,4929269,4929880,4930265,4930523	4927237,4927500,4927810,4928119,4928516,4928890,4929124,4929711,4930014,4930327,4931662	
chr2	4932374	4936304	4932591	4933738	+	Cre02.g103750.t1.2	Cre02.g103750.t1.2		4932374,4932969,4933285,4933692	4932711,4933028,4933418,4936304	
chr2	4936793	4940244	4937381	4939940	+	Cre02.g103770.t1.2	Cre02.g103770.t1.2		4936793,4937191,4937882,4938180,4938940,4939323,4939702	4937073,4937681,4938009,4938764,4939069,4939546,4940244	
chr2	4940293	4943414	4940436	4941447	+	Cre02.g103784.t1.2	Cre02.g103784.t1.2		4940293,4940761,4940937,4941133	4940476,4940803,4941007,4943414	
chr2	4943436	4955712	4944049	4955154	-	Cre02.g103800.t1.1	Cre02.g103800.t1.1		4954518,4954252,4953978,4953604,4953360,4953131,4952887,4952475,4952209,4951516,4951242,4950962,4950723,4950098,4949721,4949373,4949088,4948670,4948319,4948005,4947776,4947350,4946883,4946619,4946255,4945864,4944531,4943436	4955712,4954308,4954065,4953699,4953433,4953209,4952974,4952622,4952294,4951765,4951305,4951077,4950831,4950504,4949874,4949479,4949189,4948819,4948480,4948118,4947841,4947526,4947049,4946719,4946389,4946009,4945675,4944365	
chr2	4955843	4957484	4955977	4956734	+	HIS3	Cre02.g103850.t1.2		4955843	4957484	imidazoleglycerol-phosphate (IGP) dehydratase (EC 4.2.1.19); histidine biosynthesis pathway
chr2	4958394	4963984	4959714	4962985	+	MAPKKK11	Cre02.g103900.t1.1		4958394,4958922,4959286,4959470,4959658,4959971,4960365,4960651,4961010,4961322,4961555,4961797,4962238	4958825,4958997,4959362,4959502,4959787,4960081,4960526,4960718,4961092,4961404,4961584,4961966,4963984	
chr2	4964007	4969012	4964882	4968742	-	MIA1	Cre02.g103950.t1.2		4968380,4968089,4967762,4967411,4967039,4966758,4966446,4966182,4965801,4965598,4965321,4964007	4969012,4968200,4967872,4967566,4967215,4966838,4966517,4966271,4965983,4965657,4965431,4965098	Conserved Flagellar Associated Protein 100
chr2	4969133	4970917	4969415	4970386	+	Cre02.g104000.t1.2	Cre02.g104000.t1.2		4969133,4969657,4969870,4970017,4970271	4969526,4969741,4969927,4970085,4970917	
chr2	4970937	4972349	4971377	4972201	-	Cre02.g104050.t1.2	Cre02.g104050.t1.2		4972162,4971791,4970937	4972349,4971935,4971610	
chr2	4972501	4976152	4972798	4976017	-	Cre02.g104100.t1.2	Cre02.g104100.t1.2		4975774,4975480,4975260,4975031,4974767,4974512,4974282,4974013,4973739,4973418,4973069,4972501	4976152,4975578,4975329,4975071,4974881,4974651,4974349,4974085,4973880,4973554,4973225,4972902	
chr2	4976513	4981974	4977012	4981955	+	Cre02.g104126.t1.1	Cre02.g104126.t1.1		4976513,4976981,4977989,4978183,4978378,4978580,4978827,4979112,4979328,4979580,4979850,4980068,4980249,4980497,4980740,4980958,4981106,4981325	4976862,4977915,4978078,4978257,4978473,4978714,4978943,4979207,4979462,4979741,4979942,4980151,4980405,4980621,4980847,4981017,4981234,4981974	
chr2	4982033	4996004	4982974	4995726	+	Cre02.g104150.t1.1	Cre02.g104150.t1.1		4982033,4982215,4982383,4982603,4982969,4983153,4983406,4983609,4983838,4983999,4984251,4984377,4984534,4984694,4984927,4985271,4985487,4985811,4986396,4986708,4986843,4987138,4987440,4987686,4987937,4988352,4988597,4988808,4989034,4989236,4989514,4989644,4989889,4990019,4990282,4990585,4990820,4990999,4991164,4991461,4991678,4991848,4992358,4992818,4993014,4993225,4993466,4993739,4994025,4994339,4994614,4994880,4995177,4995438	4982111,4982271,4982481,4982860,4983031,4983283,4983510,4983737,4983893,4984105,4984304,4984439,4984599,4984828,4985127,4985391,4985701,4986281,4986539,4986743,4987025,4987323,4987538,4987824,4988226,4988489,4988692,4988942,4989096,4989304,4989558,4989808,4989936,4990192,4990455,4990704,4990900,4991036,4991371,4991500,4991760,4992207,4992708,4992886,4993130,4993323,4993618,4993897,4994161,4994492,4994784,4995058,4995324,4996004	null-allele passenger mutation was isolated (PMID 29743196)
chr2	4996017	5001602	4998135	5001573	-	Cre02.g104201.t1.1	Cre02.g104201.t1.1		5000670,5000306,5000082,4999804,4999511,4999177,4998854,4996017	5001602,5000367,5000149,4999892,4999589,4999361,4999049,4998608	
chr2	5002840	5015585	5003895	5015198	-	Cre02.g104250.t1.1	Cre02.g104250.t1.1		5015138,5014866,5014309,5013939,5013494,5013265,5013041,5012802,5012507,5012285,5011188,5010830,5010634,5010379,5010036,5008908,5005383,5005117,5004683,5004387,5004167,5002840	5015585,5014952,5014392,5014070,5013568,5013299,5013179,5012866,5012648,5012403,5011341,5010933,5010678,5010510,5010143,5009844,5008730,5005197,5004913,5004478,5004221,5003961	
chr2	5015759	5020745	5017270	5020678	-	Cre02.g104300.t1.1	Cre02.g104300.t1.1		5020319,5019815,5019436,5019182,5018867,5018557,5018219,5017985,5017650,5015759	5020745,5020114,5019638,5019233,5018921,5018668,5018325,5018080,5017794,5017467	
chr2	5020798	5025315	5021158	5025094	-	PDI5	Cre02.g104350.t1.2		5025038,5024865,5024518,5024204,5024011,5023752,5023447,5022985,5022710,5022429,5021995,5021716,5021411,5020798	5025315,5024943,5024612,5024261,5024073,5023850,5023517,5023087,5022839,5022529,5022187,5021801,5021580,5021285	Protein Disulfide Isomerase 5. Unusual active site sequence, WCHWC instead of WCGHC; PMID: 16143836
chr2	5020798	5025315	5021158	5025094	-	PDI5	Cre02.g104350.t2.1		5025038,5024865,5024518,5024204,5024011,5023752,5023447,5022985,5022710,5022429,5021995,5021716,5021411,5020798	5025315,5024943,5024612,5024261,5024073,5023844,5023517,5023087,5022839,5022529,5022187,5021801,5021580,5021285	Protein Disulfide Isomerase 5. Unusual active site sequence, WCHWC instead of WCGHC; PMID: 16143836
chr2	5025436	5031697	5025916	5031174	+	Cre02.g104400.t1.1	Cre02.g104400.t1.1		5025436,5026569,5027382,5027717,5027968,5028339,5029263,5029740	5026314,5027118,5027458,5027809,5028166,5029051,5029401,5031697	
chr2	5031707	5038885	5033470	5038531	-	Cre02.g104450.t1.1	Cre02.g104450.t1.1		5038276,5037849,5037307,5037052,5036503,5036127,5035673,5035410,5034984,5034654,5034338,5034039,5031707	5038885,5037989,5037382,5037164,5036887,5036261,5035834,5035420,5035107,5034712,5034407,5034208,5033605	
chr2	5031707	5038885	5033470	5038531	-	Cre02.g104450.t2.1	Cre02.g104450.t2.1		5038276,5037849,5037307,5037052,5036503,5036127,5035673,5035410,5034984,5034654,5034338,5034039,5031707	5038885,5037989,5037382,5037164,5036887,5036231,5035834,5035420,5035107,5034712,5034407,5034208,5033605	
chr2	5038979	5042355	5039505	5042251	-	CDJ4	Cre02.g104500.t1.1		5041990,5041712,5041315,5041055,5040811,5040501,5040110,5039885,5038979	5042355,5041846,5041416,5041192,5040849,5040608,5040216,5039942,5039673	DnaJ-like protein, targeted to the chloroplast; contains N-terminal J-domain (pfam226) and Ferredoxin domain (COG1141); described in Henselmann and Schroda, Diploma thesis, University of Freiburg. Characterized by Dorn et al. 21 [PMID: 2113313]
chr2	5042420	5046975	5042812	5046798	-	Cre02.g104550.t1.2	Cre02.g104550.t1.2		5046537,5046116,5045737,5045353,5045129,5044626,5044302,5043835,5043433,5043062,5042420	5046975,5046257,5045804,5045526,5045195,5044886,5044375,5044023,5043507,5043178,5042839	Paf1 complex component, ChromDB PAFE341; the Paf1p complex is a large complex that binds to and modulates the activity of RNA polymerase II
chr2	5047106	5049157	5047235	5048593	+	Cre02.g104600.t1.2	Cre02.g104600.t1.2		5047106,5047455,5047658,5047970,5048196,5048489	5047338,5047529,5047748,5048042,5048292,5049157	
chr2	5049190	5057155	5049531	5056962	-	Cre02.g104650.t1.1	Cre02.g104650.t1.1		5056704,5056031,5055763,5055473,5055167,5054860,5054479,5054099,5053768,5053483,5053260,5053012,5052752,5052445,5052085,5051893,5051614,5051103,5050817,5050560,5050235,5049953,5049190	5057155,5056474,5055868,5055618,5055245,5054939,5054623,5054278,5054016,5053595,5053297,5053116,5052839,5052560,5052268,5051949,5051745,5051451,5050923,5050619,5050403,5050073,5049763	
chr2	5049190	5057155	5049531	5056962	-	Cre02.g104650.t2.1	Cre02.g104650.t2.1		5056704,5056031,5055763,5055473,5055167,5054860,5054479,5054099,5053768,5053483,5053260,5053012,5052752,5052445,5052085,5051893,5051614,5051103,5050817,5050560,5050235,5049953,5049190	5057155,5056474,5055868,5055618,5055245,5054939,5054623,5054278,5054016,5053595,5053297,5053116,5052839,5052560,5052268,5051949,5051745,5051451,5050920,5050619,5050403,5050073,5049763	
chr2	5058746	5065330	5058947	5063968	+	Cre02.g104700.t1.2	Cre02.g104700.t1.2		5058746,5059475,5059906,5060016,5060268	5059086,5059611,5059941,5060149,5065330	
chr2	5065422	5070805	5066154	5070622	-	Cre02.g104725.t1.1	Cre02.g104725.t1.1		5069658,5067505,5066531,5065422	5070805,5069505,5067383,5066154	
chr2	5072750	5076685	5073752	5076655	-	Cre02.g104750.t1.1	Cre02.g104750.t1.1		5076305,5074544,5072750	5076685,5076164,5074310	
chr2	5076816	5079647	5077066	5078646	+	HTV1	Cre02.g104800.t1.1		5076816,5077174,5077400,5077723,5078004,5078129,5078251,5078467	5077093,5077306,5077500,5077797,5078079,5078151,5078335,5079647	
chr2	5079669	5082065	5080490	5081824	-	Cre02.g104850.t1.2	Cre02.g104850.t1.2		5081173,5079669	5082065,5080817	
chr2	5082232	5083335	5082450	5082649	-	Cre02.g104876.t1.1	Cre02.g104876.t1.1		5082232	5083335	
chr2	5087601	5092337	5088102	5092215	-	FAP204	Cre02.g104900.t1.2		5092137,5091976,5091537,5090680,5090072,5089754,5089521,5089340,5089068,5088707,5088358,5087601	5092337,5092043,5091675,5090821,5090229,5089844,5089591,5089409,5089120,5088839,5088461,5088171	Flagellar Associated Protein similar to GTP-binding protein; found in the flagellar proteome
chr2	5092709	5100875	5094103	5100681	-	Cre02.g104950.t1.1	Cre02.g104950.t1.1		5100414,5099819,5099561,5098949,5098672,5098403,5098160,5096520,5096131,5095390,5095179,5094781,5092709	5100875,5100268,5099689,5099362,5098811,5098556,5098225,5096654,5096322,5095845,5095265,5095064,5094674	
chr2	5100982	5109905	5101284	5109761	-	Cre02.g104951.t1.2	Cre02.g104951.t1.2		5109575,5109227,5108744,5108578,5108339,5107499,5106018,5105565,5105409,5105234,5104980,5104622,5104167,5103912,5103756,5102308,5100982	5109905,5109321,5109105,5108642,5108469,5108225,5107379,5105729,5105453,5105275,5105063,5104834,5104460,5103947,5103818,5103267,5102178	null-allele mutant was isolated (PMID 29743196)
chr2	5111226	5119877	5111914	5118733	+	Cre02.g105000.t1.1	Cre02.g105000.t1.1		5111226,5114003,5114503,5115333,5115732,5115921,5116763,5117800,5118328	5111959,5114164,5115132,5115438,5115773,5116519,5117613,5118121,5119877	
chr2	5119816	5121007	5119848	5120794	+	Cre02.g105026.t1.1	Cre02.g105026.t1.1		5119816,5119990,5120671	5119861,5120324,5121007	
chr2	5121120	5124135	5121412	5123905	-	Cre02.g105050.t1.1	Cre02.g105050.t1.1		5123851,5123653,5123244,5122883,5122532,5122025,5121120	5124135,5123746,5123557,5123039,5122689,5122160,5121813	
chr2	5127253	5129037	5127766	5127989	+	Cre02.g105100.t1.2	Cre02.g105100.t1.2		5127253,5127715	5127391,5129037	
chr2	5129124	5133395	5129435	5133285	-	Cre02.g105150.t1.1	Cre02.g105150.t1.1		5132883,5132551,5131901,5131552,5131330,5130939,5130469,5130097,5129791,5129124	5133395,5132671,5132419,5131727,5131392,5131046,5130819,5130165,5129924,5129637	
chr2	5133543	5137627	5133647	5137212	+	Cre02.g105200.t1.2	Cre02.g105200.t1.2		5133543,5133773,5134266,5134852,5135197,5135511,5135987,5136366,5136720,5137038	5133711,5133888,5134448,5135032,5135336,5135765,5136100,5136443,5136803,5137627	
chr2	5137776	5145241	5137888	5145173	+	Cre02.g105250.t1.1	Cre02.g105250.t1.1		5137776,5138229,5138625,5139033,5139391,5139770,5140205,5140543,5141235,5142653	5138068,5138322,5138730,5139142,5139485,5139874,5140319,5141057,5142512,5145241	
chr2	5146526	5148817	5146612	5147955	+	Cre02.g105287.t1.2	Cre02.g105287.t1.2		5146526,5147133	5146936,5148817	
chr2	5148822	5151453	5149448	5151208	-	FAP231	Cre02.g105300.t1.1		5150962,5150208,5149811,5148822	5151453,5150420,5149893,5149482	Protein of unknown function with ankyrin repeats, flagella associated; partial sequence
chr2	5151586	5158736	5151773	5158242	+	Cre02.g105350.t1.2	Cre02.g105350.t1.2		5151586,5152324,5153014,5153391,5153903,5154340,5154701,5155146,5155571,5156042,5156510,5156780,5157351	5151821,5152414,5153069,5153507,5153989,5154462,5154841,5155265,5155729,5156128,5156643,5156990,5158736	
chr2	5159770	5166795	5161320	5166690	-	CDC14	Cre02.g105400.t1.1		5166657,5166342,5166096,5165936,5165405,5165187,5164304,5163879,5163360,5159770	5166795,5166455,5166182,5166013,5165548,5165276,5164471,5163971,5163627,5162669	Protein Tyrosine Phosphatase
chr2	5167486	5171255	5167815	5170886	+	CGL141	Cre02.g105450.t1.1		5167486,5168484,5168925,5169411,5170277,5170706	5168040,5168624,5169125,5169970,5170385,5171255	
chr2	5171437	5177705	5171991	5177402	-	AOD1	Cre02.g105500.t1.2		5177281,5176907,5176510,5176063,5175857,5175520,5175190,5174796,5174519,5174172,5173874,5173520,5173325,5173057,5172756,5172285,5171437	5177705,5177016,5176566,5176147,5175896,5175595,5175263,5174859,5174649,5174224,5173953,5173611,5173419,5173088,5172834,5172333,5172067	putative acetylornithine deacetylase (EC 3.5.1.16); arginine biosynthesis pathway; Target-P predicts no organelle targeting
chr2	5177760	5183295	5178342	5183120	-	Cre02.g105550.t1.1	Cre02.g105550.t1.1		5182973,5182466,5182274,5182040,5181674,5181315,5181061,5180795,5180540,5179925,5178983,5178637,5177760	5183295,5182843,5182340,5182092,5181919,5181458,5181179,5180907,5180643,5180396,5179809,5178804,5178513	
chr2	5183426	5189440	5183535	5187961	+	EYE3	Cre02.g105600.t1.1		5183426,5183696,5184053,5184273,5184580,5184983,5185780,5186951	5183591,5183874,5184129,5184339,5184797,5185597,5186758,5189440	Conserved eyespot protein related to ABC1/COQ8 mitochondrial putative ser/thr kinase;  localizes to eyespot and is required for assembly of the eyespot pigment granule arrays; similar to Arabidopsis thaliana proteins associated with plastoglobules (At1g71810, At1g79600); PMID: 10511552
chr2	5183426	5189677	5183535	5187961	+	EYE3	Cre02.g105600.t2.1		5183426,5183696,5184053,5184273,5184580,5184983,5185780,5186951	5183591,5183874,5184129,5184339,5184797,5185597,5186758,5189677	Conserved eyespot protein related to ABC1/COQ8 mitochondrial putative ser/thr kinase;  localizes to eyespot and is required for assembly of the eyespot pigment granule arrays; similar to Arabidopsis thaliana proteins associated with plastoglobules (At1g71810, At1g79600); PMID: 10511552
chr2	5191099	5193579	5191913	5193507	-	Cre02.g105650.t1.2	Cre02.g105650.t1.2		5193387,5193213,5192681,5192175,5191099	5193579,5193296,5192857,5192233,5192001	
chr2	5193680	5197161	5193818	5196461	+	Cre02.g105700.t1.1	Cre02.g105700.t1.1		5193680,5194172,5194442,5194949,5195295,5195623,5195962,5196461	5194045,5194259,5194726,5195029,5195369,5195742,5196216,5197161	
chr2	5197310	5200502	5197530	5199772	+	Cre02.g105750.t1.1	Cre02.g105750.t1.1		5197310	5200502	
chr2	5201150	5209761	5201529	5208925	+	Cre02.g105800.t1.1	Cre02.g105800.t1.1		5201150,5201889,5202341,5202762,5203367,5203919,5204557,5205027,5205665,5206111,5208833	5201583,5202014,5202463,5202914,5203512,5204065,5204635,5205137,5205772,5208508,5209761	
chr2	5212310	5213672	5213133	5213302	-	Cre02.g105851.t1.1	Cre02.g105851.t1.1		5212310	5213672	
chr2	5214330	5219131	5214412	5218868	+	Cre02.g105900.t1.2	Cre02.g105900.t1.2		5214330,5214985,5215279,5215639,5216149,5216550,5216977,5217275,5217801,5218076,5218291,5218693	5214691,5215093,5215439,5215840,5216312,5216774,5217046,5217391,5217856,5218166,5218480,5219131	
chr2	5219134	5221009	5219925	5220747	-	FAP174	Cre02.g105950.t1.2		5220674,5220534,5220238,5219134	5221009,5220582,5220361,5219961	MYCBP-1 homolog; AKAP interactor in the central pair; found in the flagellar proteome, interacts with AKAP240 to regulate ciliary beating
chr2	5221110	5226071	5221182	5225429	+	Cre02.g106000.t1.1	Cre02.g106000.t1.1		5221110,5221475,5221827,5222143,5223319,5224084,5224423,5224872,5225241	5221325,5221667,5221965,5223035,5223837,5224298,5224599,5224939,5226071	
chr2	5226170	5231541	5226226	5230678	+	Cre02.g106050.t1.2	Cre02.g106050.t1.2		5226170,5226804,5227211,5227482,5228154,5228507,5228841,5229206,5229574	5226630,5226891,5227344,5227922,5228399,5228675,5228903,5229301,5231541	
chr2	5231573	5239439	5232295	5238980	-	Cre02.g106100.t1.2	Cre02.g106100.t1.2		5239233,5238114,5237589,5237279,5236755,5236052,5235560,5235280,5235048,5234666,5231573	5239439,5239112,5237670,5237412,5237136,5236617,5235805,5235448,5235110,5234761,5234497	
chr2	5239562	5241849	5239871	5241640	-	CYN18-1	Cre02.g106150.t1.2		5241580,5241209,5240831,5240519,5240248,5239562	5241849,5241308,5240975,5240582,5240304,5239937	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; cytosolic; very similar to AtCYP18-1
chr2	5242744	5246721	5242983	5245819	+	Cre02.g106200.t1.2	Cre02.g106200.t1.2		5242744,5242980,5243114,5243455,5243658,5243966,5244978,5245362,5245644	5242878,5242994,5243290,5243551,5243775,5244003,5245203,5245473,5246721	putative triose phosphate transporter
chr2	5247160	5251489	5247917	5250833	+	LAL2	Cre02.g106250.t1.2		5247160,5247869,5248192,5248399,5248850	5247507,5248040,5248273,5248712,5251489	contains an N-terminal La domain and a RRM motif; its closest homologues in Arabidopsis are LA-like proteins with a single RRM and an N-terminal extension (AT5G46250, AT3G19090), believed not to fulfill the stabilization function for tRNA precursors (PMID: 17459889); coulnd be involved in ribosome biogenesis
chr2	5251860	5256311	5252223	5255572	+	Cre02.g106300.t1.2	Cre02.g106300.t1.2		5251860,5252402,5252621,5253087,5253607,5253797,5254112,5254425,5254790,5255126,5255530	5252242,5252477,5252771,5253176,5253666,5253919,5254218,5254554,5254942,5255188,5256311	
chr2	5256460	5259661	5256669	5258885	+	CGL68	Cre02.g106350.t1.2		5256460,5257288,5257685,5258569,5258786	5256882,5257368,5257846,5258613,5259661	Conserved in the Green Lineage
chr2	5259664	5266159	5260071	5266132	-	PDAT1	Cre02.g106400.t1.1		5265844,5265255,5264997,5264622,5264327,5264061,5263753,5263257,5262693,5261959,5261695,5260944,5260658,5260392,5259664	5266159,5265747,5265091,5264684,5264397,5264163,5263857,5263443,5262897,5262442,5261809,5261524,5260774,5260441,5260237	
chr2	5266214	5270979	5266633	5270663	-	Cre02.g106450.t1.1	Cre02.g106450.t1.1		5270633,5270199,5269466,5269180,5268342,5268064,5266214	5270979,5270410,5269873,5269312,5268976,5268247,5267752	P-loop containing nucleoside triphosphate hydrolases superfamily protein; very similar to Cre02.g106450
chr2	5266214	5270979	5266633	5270663	-	Cre02.g106450.t2.1	Cre02.g106450.t2.1		5270633,5270199,5269466,5269180,5268628,5268064,5266214	5270979,5270410,5269873,5269312,5268976,5268158,5267752	P-loop containing nucleoside triphosphate hydrolases superfamily protein; very similar to Cre02.g106450
chr2	5271140	5274441	5271776	5273067	+	DIPP	Cre02.g106500.t1.2		5271140,5272001,5272209,5272459,5272761	5271907,5272100,5272292,5272620,5274441	dephosphorylates InsP8 and InsP6 to yield InsP6; homologous to yeast diadenosine and Diphosphoinositol polyphosphate phosphohydrolase; possibly organelle-targeted (by homology)
chr2	5274494	5278269	5275151	5277777	-	Cre02.g106550.t1.2	Cre02.g106550.t1.2		5277624,5277463,5277028,5276806,5276419,5276005,5275548,5274494	5278269,5277535,5277206,5276865,5276523,5276118,5275728,5275291	
chr2	5278419	5281249	5278952	5281104	-	RPS19	Cre02.g106600.t1.2		5281014,5280386,5279554,5278419	5281249,5280476,5279673,5279104	Cytosolic 40S small ribosomal subunit protein S19
chr2	5287410	5296386	5287527	5295097	+	Cre02.g106650.t1.1	Cre02.g106650.t1.1		5287410,5288575,5288894,5289143,5289442,5289703,5289874,5290108,5290386,5290689,5290968,5291455	5288436,5288640,5289016,5289302,5289566,5289762,5289971,5290243,5290502,5290813,5291346,5296386	
chr2	5296404	5304479	5297179	5304197	-	OPR4	Cre02.g106700.t1.1		5303051,5302587,5302288,5301763,5301394,5300822,5299968,5299537,5299121,5298910,5298547,5297672,5296404	5304479,5302793,5302428,5302014,5301510,5301253,5300459,5299680,5299237,5298950,5298744,5298371,5297410	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr2	5304590	5307001	5304728	5306070	+	MRPS9	Cre02.g106750.t1.2		5304590	5307001	
chr2	5307024	5309609	5307056	5309366	-	Cre02.g106800.t1.2	Cre02.g106800.t1.2		5309471,5309203,5308063,5307024	5309609,5309367,5309033,5307863	
chr2	5309742	5313261	5309962	5312882	+	TPR6	Cre02.g106850.t1.2		5309742,5310297,5310538,5310777,5311108,5311388,5311770,5312064,5312456,5312824	5309992,5310391,5310580,5310878,5311233,5311550,5311821,5312235,5312559,5313261	Protein containing TPR domain at its N-terminus; circadian expressed protein [PMID: 14960320], supported by proteome data
chr2	5313277	5319389	5314744	5319183	-	Cre02.g106900.t1.2	Cre02.g106900.t1.2		5319140,5318560,5315624,5315238,5313277	5319389,5319056,5318355,5315421,5315032	
chr2	5319870	5325761	5320370	5324010	+	Cre02.g106950.t1.1	Cre02.g106950.t1.1		5319870,5320306,5320635,5320979,5321455,5321635,5321931,5322153,5322601,5323085,5323219,5323511,5323920	5320199,5320376,5320766,5321055,5321512,5321736,5322014,5322281,5322772,5323092,5323296,5323711,5325761	
chr2	5327480	5332189	5327888	5330352	+	Cre02.g107000.t1.1	Cre02.g107000.t1.1		5327480,5328151,5328542,5328828,5329113,5329306,5329594,5329998,5330265	5327954,5328340,5328641,5328951,5329181,5329440,5329857,5330099,5332189	
chr2	5332212	5355139	5332612	5355047	-	DHC5	Cre02.g107050.t1.1		5355007,5354870,5354652,5354305,5353890,5353401,5353177,5352899,5352635,5352259,5351480,5351199,5350733,5350367,5349996,5349707,5349430,5349229,5349026,5348701,5348428,5348131,5347800,5347481,5346807,5346350,5345955,5345702,5345434,5345228,5344922,5344716,5344494,5344030,5343742,5343509,5343171,5342861,5342566,5342203,5341822,5341459,5341107,5340889,5340494,5340183,5339834,5339520,5339260,5338929,5338650,5338400,5338129,5337724,5337308,5337021,5336800,5336427,5336097,5335418,5334985,5334732,5334327,5333690,5333303,5332974,5332212	5355139,5354919,5354691,5354414,5354015,5353589,5353290,5353027,5352729,5352460,5352105,5351369,5351015,5350582,5350181,5349868,5349536,5349300,5349101,5348913,5348537,5348307,5347995,5347675,5347337,5346685,5346207,5345802,5345577,5345298,5345114,5344826,5344607,5344341,5343899,5343612,5343343,5343011,5342732,5342412,5342026,5341632,5341366,5340992,5340707,5340335,5340001,5339645,5339390,5339129,5338782,5338493,5338275,5337974,5337552,5337186,5336877,5336681,5336292,5335952,5335238,5334842,5334602,5334149,5333498,5333153,5332843	Flagellar inner arm dynein heavy chain, dynein b; identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]; linked to DHC4; null-allele mutant was isolated (PMID 29743196)
chr2	5355192	5367009	5355812	5366889	-	Cre02.g107100.t1.1	Cre02.g107100.t1.1		5365955,5365797,5365471,5362087,5359784,5359474,5359232,5359035,5358371,5357957,5357712,5357515,5356871,5355192	5367009,5365856,5365637,5365263,5361916,5359656,5359367,5359102,5358901,5358253,5357809,5357595,5356967,5356754	
chr2	5367110	5370602	5367282	5370229	+	Cre02.g107150.t1.1	Cre02.g107150.t1.1		5367110,5367639,5367972,5369866,5370136	5367380,5367714,5367989,5369958,5370602	
chr2	5370604	5372477	5371708	5372328	-	Cre02.g107200.t1.1	Cre02.g107200.t1.1		5372325,5372171,5371970,5371826,5370604	5372477,5372208,5372051,5371876,5371726	
chr2	5372560	5374700	5373263	5373516	+	Cre02.g107213.t1.2	Cre02.g107213.t1.2		5372560,5372950	5372623,5374700	
chr2	5375217	5378267	5375971	5377178	-	Cre02.g107256.t1.1	Cre02.g107256.t1.1		5377590,5375217	5378267,5377372	
chr2	5378372	5381527	5379847	5381288	-	DPS1	Cre02.g107300.t1.2		5380611,5378372	5381527,5380220	dihydrodipicolinate synthase (DHDPS) (EC:4.2.1.520); predicted organelle (mitochondria) targeting by Target-P; expected to be plastidic based on homology
chr2	5381888	5412299	5382044	5411653	+	DHC4	Cre02.g107350.t1.1		5381888,5382444,5382750,5383136,5384165,5384560,5384927,5385379,5385591,5385936,5386308,5386492,5386740,5386954,5387366,5387650,5387924,5388285,5388754,5389055,5389328,5389699,5389939,5390152,5390379,5390821,5391203,5391530,5391739,5392003,5392256,5392572,5392787,5393194,5393498,5393705,5394027,5394465,5394873,5395101,5395343,5395543,5395720,5396060,5396486,5396695,5396938,5397204,5397674,5397920,5398155,5398454,5398697,5398895,5399126,5399408,5399823,5400123,5400350,5400665,5401057,5401291,5401582,5401784,5402196,5402490,5402697,5402865,5403116,5403354,5403528,5403736,5404075,5404453,5404781,5405132,5405476,5405758,5405981,5406273,5406595,5407034,5407299,5407696,5408033,5408759,5409138,5409488,5409724,5410190,5410587,5410894,5411117,5411448	5382299,5382560,5382969,5383944,5384281,5384721,5385103,5385457,5385753,5386158,5386379,5386623,5386826,5387124,5387488,5387741,5388044,5388542,5388887,5389115,5389519,5389776,5390019,5390251,5390515,5391012,5391388,5391607,5391852,5392119,5392471,5392646,5393038,5393370,5393574,5393915,5394362,5394759,5394973,5395187,5395432,5395619,5395927,5396373,5396586,5396807,5397013,5397561,5397755,5398015,5398319,5398552,5398788,5399021,5399310,5399643,5399979,5400231,5400517,5400900,5401180,5401437,5401644,5401999,5402337,5402574,5402727,5402926,5403230,5403413,5403593,5403908,5404210,5404608,5404980,5405297,5405607,5405805,5406107,5406444,5406808,5407146,5407554,5407868,5408442,5408891,5409314,5409569,5409936,5410351,5410745,5410959,5411289,5412299	Dynein heavy chain 4, novel minor type dynein (monomeric); inner arm dynein heavy chain; has not been identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]; novel minor type found exclusively at the flagellar basal portion; linked to DHC5
chr2	5412302	5421167	5412993	5420980	-	Cre02.g107400.t1.1	Cre02.g107400.t1.1		5420826,5420425,5419960,5419659,5418556,5417683,5417408,5417105,5416676,5416291,5416007,5415584,5415246,5415007,5414545,5414139,5413908,5413693,5413335,5412302	5421167,5420541,5420327,5419737,5419377,5418269,5417470,5417252,5416833,5416499,5416109,5415832,5415296,5415076,5414716,5414261,5414007,5413734,5413483,5413183	null-allele mutant was isolated (PMID 29743196)
chr2	5412302	5421167	5412993	5420980	-	Cre02.g107400.t2.1	Cre02.g107400.t2.1		5420826,5420425,5419960,5419659,5418556,5417683,5417105,5416676,5416291,5416007,5415584,5415246,5415007,5414545,5414139,5413908,5413693,5413335,5412302	5421167,5420541,5420327,5419737,5419377,5418272,5417252,5416833,5416499,5416109,5415832,5415296,5415076,5414716,5414261,5414007,5413734,5413483,5413183	null-allele mutant was isolated (PMID 29743196)
chr2	5412302	5421167	5412993	5420980	-	Cre02.g107400.t3.1	Cre02.g107400.t3.1		5420826,5420425,5419960,5419659,5418556,5417683,5417105,5416676,5416291,5416007,5415584,5415246,5415007,5414545,5414139,5413908,5413693,5413335,5412302	5421167,5420541,5420327,5419737,5419377,5418269,5417252,5416833,5416499,5416109,5415832,5415296,5415076,5414716,5414261,5414007,5413734,5413483,5413183	null-allele mutant was isolated (PMID 29743196)
chr2	5421242	5424777	5422033	5424651	-	ATS2	Cre02.g107450.t1.2		5424529,5424249,5423995,5423530,5423350,5422965,5422612,5422339,5421242	5424777,5424467,5424073,5423655,5423417,5423151,5422825,5422481,5422165	ATP-sulfurylase; catalyses the synthesis of adenosine-phosphosulphate (APS) from ATP and inorganic sulphate. Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr2	5425818	5432369	5426150	5431221	+	Cre02.g107500.t1.2	Cre02.g107500.t1.2		5425818,5426304,5426564,5426904,5427085,5428219,5429102,5430018,5430367,5430622,5430930	5426196,5426382,5426768,5426936,5427970,5428907,5429865,5430189,5430444,5430684,5432369	
chr2	5432380	5436107	5433374	5436067	-	CVL2	Cre02.g107550.t1.2		5435863,5435473,5435205,5434658,5434421,5434131,5433669,5432380	5436107,5435542,5435272,5434833,5434472,5434164,5433820,5433455	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family
chr2	5432380	5436217	5433374	5436067	-	CVL2	Cre02.g107550.t2.1		5435863,5435473,5435205,5434658,5434421,5434131,5433669,5432380	5436217,5435542,5435272,5434833,5434472,5434164,5433820,5433455	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family
chr2	5436272	5440510	5436886	5440281	-	GAK	Cre02.g107600.t1.2		5440172,5439976,5439613,5439311,5438909,5438511,5438211,5437828,5437540,5437351,5437156,5436272	5440510,5440016,5439762,5439449,5439042,5438657,5438255,5437955,5437602,5437379,5437202,5436994	GHMP kinase family protein
chr2	5440776	5445887	5442159	5445307	-	Cre02.g107650.t1.2	Cre02.g107650.t1.2		5445438,5442967,5440776	5445887,5445327,5442822	
chr2	5447108	5455389	5447291	5455296	+	Cre02.g107700.t1.1	Cre02.g107700.t1.1		5447108,5447526,5448891,5449146,5450114,5450499,5450906,5451230,5451671,5452270,5452606,5452897,5453137,5454004,5454210,5454564,5455104	5447333,5448518,5448962,5449699,5450187,5450584,5450941,5451306,5452043,5452368,5452677,5452937,5453734,5454042,5454311,5454947,5455389	
chr2	5455391	5458537	5456247	5458453	-	PCD1	Cre02.g107750.t1.2		5458323,5457954,5457327,5456590,5455391	5458537,5458141,5457623,5456733,5456310	
chr2	5458668	5464819	5458911	5463971	+	CNK9	Cre02.g107800.t1.1		5458668,5458989,5459390,5459668,5459937,5460241,5460477,5460739,5460998,5461199,5461466,5461965,5462682,5463442	5458920,5459057,5459512,5459760,5459990,5460336,5460584,5460770,5461049,5461269,5461690,5462499,5463298,5464819	
chr2	5464868	5468959	5465022	5467090	+	MOB1	Cre02.g107850.t1.2		5464868,5465140,5465314,5466044,5466378,5466691,5466988	5465036,5465197,5465517,5466142,5466506,5466759,5468959	MOB1 proteins are involved in mitotic exit and regulation of cytokinesis. Ts-lethal mutant block at S/M (PMID 29743196)
chr2	5468962	5471997	5469078	5471624	-	Cre02.g107900.t1.2	Cre02.g107900.t1.2		5471586,5471272,5470861,5470475,5468962	5471997,5471385,5470976,5470545,5470329	
chr2	5473289	5476049	5474580	5475760	-	Cre02.g107950.t1.2	Cre02.g107950.t1.2		5475692,5475186,5474946,5473289	5476049,5475418,5475016,5474817	
chr2	5476228	5480679	5476310	5480401	+	Cre02.g108000.t1.1	Cre02.g108000.t1.1		5476228,5476651,5476992,5477707,5478287,5478590,5478790,5479030,5479286,5479511,5479782,5480319	5476509,5476838,5477570,5478147,5478459,5478676,5478856,5479176,5479342,5479588,5480005,5480679	
chr2	5476228	5480679	5476310	5480401	+	Cre02.g108000.t2.1	Cre02.g108000.t2.1		5476228,5476651,5476992,5477386,5477707,5478287,5478590,5478790,5479030,5479286,5479511,5479782,5480319	5476509,5476838,5477316,5477570,5478147,5478459,5478676,5478856,5479176,5479342,5479588,5480005,5480679	
chr2	5480728	5483279	5480852	5483033	+	Cre02.g108050.t1.2	Cre02.g108050.t1.2		5480728,5481385,5481685,5482128,5482632,5482877	5481094,5481421,5481801,5482280,5482706,5483279	
chr2	5483282	5491717	5483812	5491470	-	Cre02.g108100.t1.1	Cre02.g108100.t1.1		5491467,5491095,5490769,5490379,5489985,5489621,5489352,5489112,5488697,5488168,5487742,5487242,5486682,5486351,5485482,5485040,5484538,5483282	5491717,5491226,5490870,5490550,5490184,5489728,5489436,5489191,5488792,5488293,5487862,5487393,5486816,5486471,5485873,5485171,5484879,5484343	
chr2	5492159	5496567	5492669	5496490	-	Cre02.g108150.t1.1	Cre02.g108150.t1.1		5496331,5496127,5495685,5495491,5495113,5494836,5494592,5494242,5493499,5493229,5492960,5492159	5496567,5496220,5495971,5495604,5495316,5494943,5494716,5494481,5494093,5493360,5493079,5492789	
chr2	5496678	5499599	5497520	5499203	+	CGL80	Cre02.g108200.t1.1		5496678,5497200,5498258,5498615,5498996	5496945,5498030,5498420,5498760,5499599	
chr2	5499602	5509138	5501054	5509018	-	Cre02.g108250.t1.1	Cre02.g108250.t1.1		5508927,5508636,5508110,5507822,5507490,5507208,5506822,5506182,5505776,5505473,5504646,5504027,5503637,5503104,5502337,5501903,5501628,5499602	5509138,5508775,5508199,5507875,5507561,5507276,5506996,5506408,5505893,5505563,5504744,5504233,5503733,5503229,5502387,5502045,5501702,5501337	
chr2	5509238	5512889	5509309	5512206	+	Cre02.g108300.t1.1	Cre02.g108300.t1.1		5509238,5509448,5509749,5510177,5510443,5510896,5511486	5509349,5509494,5509979,5510228,5510501,5511087,5512889	
chr2	5512893	5519817	5514530	5519597	-	Cre02.g108350.t1.2	Cre02.g108350.t1.2		5519402,5518790,5518497,5512893	5519817,5518893,5518625,5518239	
chr2	5521488	5522946	5521596	5522395	+	DAD1	Cre02.g108400.t1.2		5521488,5521766,5521904,5522267	5521659,5521813,5521991,5522946	Putative defender against death (DAD) protein; contains a DAD domain (IPR003038)
chr2	5523280	5525477	5524034	5525244	-	FAP280	Cre02.g108450.t1.2		5525151,5525047,5524863,5524713,5523280	5525477,5525086,5524952,5524795,5524148	Flagellar Associated Protein similar to Transcriptional Coactivator-Like Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr2	5526646	5533718	5527963	5533302	-	Cre02.g108500.t1.1	Cre02.g108500.t1.1		5532826,5530458,5530073,5529172,5528609,5526646	5533718,5532615,5530148,5529955,5528963,5528296	
chr2	5534124	5541208	5535018	5541137	-	AOC3	Cre02.g108550.t1.1		5541017,5540871,5540456,5540179,5539990,5539577,5539280,5539116,5538901,5538590,5538339,5537929,5537566,5537393,5537072,5536788,5536551,5536230,5535977,5535710,5535380,5534124	5541208,5540949,5540599,5540224,5539997,5539785,5539360,5539154,5538973,5538669,5538376,5538073,5537678,5537441,5537133,5536878,5536607,5536315,5536068,5535769,5535452,5535157	amino acid carrier 3; belongs to APC (Amino acid Polyamine organoCation) family
chr2	5541263	5547398	5542708	5547343	-	Cre02.g108601.t1.1	Cre02.g108601.t1.1		5547281,5546769,5546365,5545945,5544612,5543915,5543356,5543059,5541263	5547398,5546886,5546454,5546160,5545866,5544512,5543701,5543138,5542844	
chr2	5547493	5550448	5549129	5550053	-	Cre02.g108650.t1.2	Cre02.g108650.t1.2		5549732,5549435,5547493	5550448,5549511,5549259	
chr2	5550713	5555128	5550863	5554424	-	Cre02.g108700.t1.1	Cre02.g108700.t1.1		5554403,5554125,5553718,5552720,5551339,5550713	5555128,5554214,5553936,5553602,5552482,5551131	
chr2	5555351	5562148	5556564	5562043	-	Cre02.g108750.t1.2	Cre02.g108750.t1.2		5561948,5561578,5561208,5560904,5560540,5559305,5558359,5557934,5557670,5557268,5556942,5555351	5562148,5561733,5561334,5560996,5560680,5560327,5559158,5558104,5557716,5557389,5557018,5556787	
chr2	5562709	5572200	5562996	5571166	+	DNJ26	Cre02.g108800.t1.1		5562709,5563519,5563806,5564291,5564510,5566616,5567038,5567241,5567527,5567871,5568135,5568596,5568963,5569378,5569713,5569958,5570157,5570500,5570918	5563152,5563705,5564152,5564383,5566458,5566940,5567111,5567375,5567646,5567993,5568411,5568778,5569188,5569508,5569798,5570015,5570297,5570773,5572200	Putative chloroplast-targeted TPR protein contains heat shock protein DnaJ domain (pfam226) in C terminus and N-terminal TPR, Tetratricopeptide repeat domain (cd189); weak homology with Arabidopsis Q94CJ9.  Previously annotated as TPR1
chr2	5572431	5574488	5573347	5574318	-	PRPL17	Cre02.g108850.t1.2		5574194,5573958,5573767,5572431	5574488,5574115,5573847,5573506	imported to chloroplast; Chloroplast large ribosomal subunit protein L17
chr2	5574637	5577488	5575295	5577462	-	CAM6	Cre02.g108900.t1.2		5577310,5576694,5576455,5575955,5575630,5574637	5577488,5576790,5576514,5576050,5575695,5575355	
chr2	5578680	5583218	5579354	5583187	-	LF1	Cre02.g108950.t1.1		5583118,5582891,5582478,5582044,5581591,5579962,5578680	5583218,5583009,5582634,5582286,5581809,5581419,5579807	Long-flagella mutant LF1 protein involved in the regulation of flagellar length.  Found predominantly, if not exclusively, in the cell body in punctate structures called the Length Regulatory Complex (LRC), see Tam et al. (27)
chr2	5583369	5587183	5583590	5586839	+	Cre02.g109000.t1.2	Cre02.g109000.t1.2		5583369,5585530,5585981,5586311,5586640	5585303,5585800,5586092,5586406,5587183	
chr2	5583369	5587183	5583590	5586839	+	Cre02.g109000.t2.1	Cre02.g109000.t2.1		5583369,5585530,5585984,5586311,5586640	5585303,5585800,5586092,5586406,5587183	
chr2	5587300	5594630	5587379	5593801	+	OPR5	Cre02.g109050.t1.2		5587300,5587606,5587808,5588885,5589215,5589563,5590152,5590656,5591050,5591830,5592254,5592650,5593164,5593783	5587486,5587693,5588338,5588989,5589436,5589712,5590339,5590743,5591616,5591957,5592305,5592840,5593404,5594630	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr2	5595453	5607168	5597082	5606661	-	PDE23	Cre02.g109100.t1.1		5606586,5606005,5605609,5605129,5604595,5604187,5603872,5603625,5603351,5603057,5602776,5600819,5600476,5600149,5599733,5599443,5599041,5598732,5598431,5595453	5607168,5606083,5605686,5605265,5604945,5604375,5603996,5603676,5603402,5603153,5602839,5602566,5600635,5600233,5599845,5599612,5599305,5598790,5598548,5597679	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain
chr2	5607863	5610148	5608243	5609851	-	Cre02.g109126.t1.1	Cre02.g109126.t1.1		5609791,5608943,5608513,5607863	5610148,5609058,5608609,5608354	
chr2	5611499	5613060	5611644	5612241	+	Cre02.g109150.t1.1	Cre02.g109150.t1.1		5611499,5611964	5611793,5613060	
chr2	5613068	5616368	5614002	5616030	-	Cre02.g109200.t1.1	Cre02.g109200.t1.1		5615944,5615646,5615062,5614163,5613068	5616368,5615742,5615395,5614810,5614019	
chr2	5616499	5621360	5616660	5620351	+	Cre02.g109250.t1.1	Cre02.g109250.t1.1		5616499,5616914,5617259,5617593,5618061,5618363,5618634,5618947,5619328,5619742,5620137	5616756,5617160,5617380,5617808,5618156,5618413,5618693,5619081,5619420,5619893,5621360	
chr2	5622459	5623970	5622486	5623930	+	Cre02.g109300.t1.2	Cre02.g109300.t1.2		5622459	5623970	
chr2	5625003	5628808	5627481	5628232	-	Cre02.g109333.t1.1	Cre02.g109333.t1.1		5627995,5625003	5628808,5627781	
chr2	5629353	5633608	5629864	5633312	-	Cre02.g109366.t1.1	Cre02.g109366.t1.1		5633131,5632196,5631913,5631372,5631009,5630755,5629353	5633608,5633010,5631953,5631771,5631207,5630822,5629999	
chr2	5633719	5637076	5634053	5636535	+	Cre02.g109400.t1.2	Cre02.g109400.t1.2		5633719,5634425,5634761,5635056,5635284,5635623,5635941,5636366	5634167,5634557,5634863,5635146,5635388,5635771,5636189,5637076	
chr2	5638591	5641237	5639194	5640726	+	Cre02.g109450.t1.1	Cre02.g109450.t1.1		5638591,5639165,5640021,5640435	5638932,5639563,5640107,5641237	
chr2	5641299	5645620	5641646	5644940	+	Cre02.g109501.t1.1	Cre02.g109501.t1.1		5641299,5641639,5642536,5642918,5643301,5643482,5643775,5643956,5644401,5644669	5641488,5641696,5642651,5643134,5643411,5643575,5643828,5644175,5644446,5645620	
chr2	5645622	5649728	5646072	5649552	-	HSD1	Cre02.g109550.t1.2		5649453,5649029,5648532,5648151,5647714,5647395,5647024,5646639,5646401,5645622	5649728,5649157,5648724,5648218,5647838,5647477,5647172,5646751,5646467,5646186	putative homoserine dehydrogenase (EC 1.1.1.3); similar to HSDH portion of Arabidopsis bifunctional aspartate kinase/homoserine dehydrogenase (GenBank BAC43372), but lacking the aspartate kinase portion; 5' end overlaps predicted 3' UTR of Chlamydomonas inositol monophosphatase (GenBank AAW82030); organelle targeting (mitochondria) predicted by Target-P
chr2	5649783	5654248	5650105	5654130	-	Cre02.g109600.t1.2	Cre02.g109600.t1.2		5653962,5652913,5652502,5652149,5651985,5651698,5651315,5651038,5650713,5650350,5649783	5654248,5653014,5652584,5652239,5652012,5651786,5651422,5651089,5650810,5650415,5650207	putative homoserine dehydrogenase (EC 1.1.1.3); similar to HSDH portion of Arabidopsis bifunctional aspartate kinase/homoserine dehydrogenase (GenBank BAC43372), but lacking the aspartate kinase portion; 5' end overlaps predicted 3' UTR of Chlamydomonas inositol monophosphatase (GenBank AAW82030); organelle targeting (mitochondria) predicted by Target-P
chr2	5654349	5660330	5654715	5659436	+	GSP1	Cre02.g109650.t1.1		5654349,5654943,5655236,5656464,5656948,5657247,5658013,5658553,5658998	5654743,5655037,5656324,5656823,5657070,5657745,5658358,5658658,5660330	Homeobox transcription factor, expressed only in mating type (+) gametes, late in gametogenesis [PMID: 9864368]. GSP1's activity may be modulated by phosphorylation [PMID: 10567416]; together with GSM1, functions as a master regulator of the zygote development [PMID: 11641281]
chr2	5660679	5664910	5660711	5663557	+	Cre02.g109683.t1.1	Cre02.g109683.t1.1		5660679,5661144,5661821,5662077,5662418,5662846,5662999,5663161,5663374	5660912,5661705,5661912,5662238,5662620,5662876,5663046,5663229,5664910	
chr2	5665733	5667958	5666246	5667420	-	Cre02.g109716.t1.1	Cre02.g109716.t1.1		5667398,5665733	5667958,5666404	
chr2	5668349	5676443	5668906	5674719	+	Cre02.g109750.t1.1	Cre02.g109750.t1.1		5668349,5669106,5669991,5673946,5674395	5668952,5669887,5673784,5674153,5676443	
chr2	5676500	5680468	5677087	5680430	-	CPLD32	Cre02.g109800.t1.1		5680327,5680055,5679732,5679299,5678957,5678773,5678369,5678020,5677672,5676500	5680468,5680254,5679848,5679616,5679166,5678826,5678602,5678181,5677856,5677496	Conserved FAD dependent oxidoreductase; predicted targeting to mitochondrion for Arabidopsis homologue.  Previously annotated as CPLD32
chr2	5680569	5683916	5680686	5683171	+	PIGC	Cre02.g109850.t1.1		5680569,5681215,5681566,5681848,5682056,5682439,5682823	5680965,5681389,5681615,5681884,5682170,5682544,5683916	Phosphatidylinositol glycan synthase
chr2	5683973	5688338	5684492	5688194	-	Cre02.g109900.t1.2	Cre02.g109900.t1.2		5688086,5687576,5687231,5685607,5685282,5685100,5683973	5688338,5687848,5687266,5687076,5685365,5685150,5684777	
chr2	5688439	5689287	5688539	5688867	+	HLIP1	Cre02.g109950.t1.2		5688439	5689287	Single helix protein similar to the HLIPs. A member of the extended LHC gene family. The protein is required for viability in high light in cyanobacteria and appears to be involved in stress acclimation
chr2	5690897	5697418	5691861	5697315	-	Cre02.g110000.t1.1	Cre02.g110000.t1.1		5697173,5696462,5696128,5695794,5695360,5694924,5694631,5694397,5693918,5692888,5690897	5697418,5696634,5696278,5695897,5695457,5695087,5694828,5694507,5694229,5693773,5692747	
chr2	5690897	5697418	5691861	5697315	-	Cre02.g110000.t2.1	Cre02.g110000.t2.1		5697173,5696462,5696128,5695794,5695360,5694924,5694631,5694397,5693918,5692894,5690897	5697418,5696634,5696278,5695897,5695457,5695087,5694828,5694507,5694229,5693773,5692747	
chr2	5699438	5709310	5699620	5708925	+	Cre02.g110050.t1.1	Cre02.g110050.t1.1		5699438,5699978,5700290,5700730,5701003,5701352,5701689,5702104,5702292,5702528,5702747,5703030,5703347,5703634,5703801,5704031,5704370,5704701,5704973,5705257,5705593,5705972,5706336,5706593,5706804,5707271,5707697,5707981,5708334,5708655	5699737,5700060,5700428,5700816,5701220,5701422,5701782,5702161,5702381,5702596,5702851,5703131,5703504,5703715,5703868,5704193,5704587,5704821,5705080,5705376,5705829,5706197,5706448,5706685,5707136,5707609,5707797,5708213,5708449,5709310	
chr2	5699438	5709310	5699620	5708925	+	Cre02.g110050.t2.1	Cre02.g110050.t2.1		5699438,5699978,5700290,5700730,5701003,5701352,5701689,5702104,5702292,5702528,5702747,5703030,5703347,5703634,5703801,5704031,5704370,5704701,5704973,5705257,5705972,5706336,5706593,5706804,5707271,5707697,5707981,5708334,5708655	5699737,5700060,5700428,5700816,5701220,5701422,5701782,5702161,5702381,5702596,5702851,5703131,5703504,5703715,5703868,5704193,5704587,5704821,5705080,5705376,5706197,5706448,5706685,5707136,5707609,5707797,5708213,5708449,5709310	
chr2	5709398	5716187	5709684	5715482	+	MLO1	Cre02.g110100.t1.1		5709398,5709838,5709988,5710330,5710697,5710911,5711779,5713617,5714150,5714679	5709764,5709901,5710104,5710578,5710767,5711590,5713399,5713852,5714377,5716187	Integral membrane protein, plant GCPR-like Mlo family; contains a C-terminal EF-hand domain pair
chr2	5716998	5723809	5717348	5722893	+	Cre02.g110150.t1.2	Cre02.g110150.t1.2		5716998,5717816,5718192,5718754,5719132,5719901,5720095,5720348	5717369,5717987,5718649,5719020,5719810,5719992,5720168,5723809	
chr2	5724148	5729667	5724844	5729106	-	THO1	Cre02.g110200.t1.1		5729230,5729099,5728909,5728452,5728190,5727558,5727165,5726375,5725729,5725424,5724148	5729667,5729127,5729030,5728709,5728334,5728045,5727435,5727016,5726234,5725585,5725246	belongs to M3 family of metalloproteases, like thimet oligopeptidase; most similar to eubacterial homologues; possibly organelle-targetted
chr2	5729802	5733300	5729830	5732596	+	PCD2	Cre02.g110250.t1.1		5729802,5729997,5730547,5730826,5731113,5731291,5731504,5731741,5732006,5732316,5732518	5729925,5730067,5730649,5730919,5731121,5731372,5731589,5731819,5732166,5732378,5733300	
chr2	5734222	5735797	5735386	5735742	-	CSB15	Cre02.g110263.t1.1		5735625,5734222	5735797,5735509	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	5735243	5735797	5735386	5735742	-	CSB15	Cre02.g110263.t3.1		5735625,5735243	5735797,5735509	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	5734222	5735747	5735386	5735709	-	CSB15	Cre02.g110263.t2.1		5735625,5734222	5735747,5735509	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	5735978	5738632	5736135	5737465	+	DNJ25	Cre02.g110300.t1.2		5735978,5736339,5736979,5737318	5736213,5736383,5737119,5738632	DnaJ-like protein, probably cytosolic since it contains very short N-terminal extension and homologs in Arabidopsis (Q8RYC5, Q8L7R1, and Q9FMD2) are predicted by TargetP to be cytosolic; contains N-terminal J-domain (pfam226); no homology to other prote
chr2	5741348	5744449	5741437	5744054	+	Cre02.g110350.t1.2	Cre02.g110350.t1.2		5741348,5741894,5742118,5742249,5742382,5742492,5742811,5743050,5743212,5743441,5743864,5744034	5741505,5741964,5742134,5742260,5742420,5742560,5742885,5743085,5743305,5743731,5743908,5744449	
chr2	5744452	5748559	5744741	5748324	-	Cre02.g110400.t1.2	Cre02.g110400.t1.2		5748266,5747837,5747441,5747071,5746711,5746424,5746073,5745750,5745414,5745148,5744452	5748559,5748029,5747492,5747184,5746821,5746530,5746205,5745884,5745512,5745210,5744909	
chr2	5748678	5751559	5748785	5750803	+	Cre02.g110450.t1.2	Cre02.g110450.t1.2		5748678,5749039,5749384,5749603,5749831,5750394,5750701	5748884,5749175,5749522,5749659,5749905,5750429,5751559	
chr2	5751608	5755985	5751782	5755399	+	Cre02.g110500.t1.1	Cre02.g110500.t1.1		5751608,5752447,5753198,5753657,5754164,5754573,5755249	5751945,5752818,5753336,5753792,5754331,5754845,5755985	
chr2	5756282	5761327	5757259	5760907	-	Cre02.g110550.t1.1	Cre02.g110550.t1.1		5760868,5760353,5759935,5759754,5758524,5756282	5761327,5760414,5759998,5759768,5759540,5758378	
chr2	5761800	5765257	5763150	5764912	-	DEG5	Cre02.g110600.t1.2		5764772,5764527,5764046,5763778,5763470,5761800	5765257,5764608,5764429,5763840,5763511,5763249	DegP-type protease, thylakoid lumen; no PDZ domain
chr2	5765378	5772949	5766047	5772168	+	Cre02.g110650.t1.2	Cre02.g110650.t1.2		5765378,5766927,5767243,5767570,5768011,5768246,5768639,5769641,5769821,5770276,5770633,5770971,5771311,5771578,5771790	5766755,5767058,5767413,5767853,5768068,5768400,5768771,5769705,5769980,5770438,5770826,5771152,5771419,5771646,5772949	
chr2	5772952	5786137	5773459	5785523	-	Cre02.g110700.t1.1	Cre02.g110700.t1.1		5785690,5785490,5785243,5784955,5784666,5783778,5783355,5782750,5782377,5781924,5780952,5780651,5780337,5776822,5772952	5786137,5785588,5785299,5785086,5784783,5783881,5783669,5783187,5782607,5782235,5781815,5780797,5780515,5780156,5776692	null-allele passenger mutation was isolated (PMID 29743196)
chr2	5786308	5789567	5786359	5789078	+	LHCB7	Cre02.g110750.t1.2		5786308,5786739,5787007,5787307,5787514,5787815,5788142,5788451,5788693,5788976	5786521,5786859,5787125,5787401,5787639,5787932,5788278,5788574,5788755,5789567	LHCII type I CAB; LHCP
chr2	5789618	5799339	5789925	5798213	+	NRT2.6	Cre02.g110800.t1.1		5789618,5792978,5793229,5793751,5794150,5796550,5796916,5797164,5797357,5797587,5797816,5798087	5792743,5793060,5793428,5793824,5796399,5796773,5797023,5797218,5797409,5797696,5797882,5799339	Belongs to major facilitator superfamily
chr2	5799372	5801657	5801213	5801517	-	Cre02.g110843.t1.2	Cre02.g110843.t1.2		5799372	5801657	
chr2	5802078	5807180	5802708	5806295	+	Cre02.g110850.t1.2	Cre02.g110850.t1.2		5802078,5803900,5804279,5804561,5804757,5805109,5805336,5805553,5805806,5806140	5803674,5804006,5804364,5804614,5804903,5805175,5805396,5805660,5805965,5807180	
chr2	5807202	5811347	5807676	5811298	-	Cre02.g110900.t1.1	Cre02.g110900.t1.1		5811136,5810753,5810422,5810127,5809414,5808912,5808577,5808085,5807202	5811347,5810991,5810578,5810318,5809951,5809192,5808729,5808441,5807889	
chr2	5811429	5815684	5811845	5815503	-	DIC5	Cre02.g110950.t1.1		5815452,5815111,5814836,5814403,5814093,5813799,5813481,5813046,5812799,5812446,5812105,5811429	5815684,5815313,5814926,5814563,5814237,5813949,5813589,5813262,5812915,5812599,5812265,5811962	found in the flagellar proteome
chr2	5815788	5819429	5815959	5818790	+	CGL9	Cre02.g111000.t1.2		5815788,5816393,5816594,5816906,5817111,5817295,5817485,5817673,5818103,5818359,5818717	5816067,5816472,5816666,5817022,5817149,5817338,5817537,5817842,5818224,5818451,5819429	GT77 family protein, Conserved in the Green Lineage
chr2	5820048	5827789	5820190	5826684	+	Cre02.g111014.t1.1	Cre02.g111014.t1.1		5820048,5820355,5820594,5820906,5821471,5822051,5822479,5822739,5823158,5823880	5820199,5820405,5820614,5821031,5821599,5822210,5822574,5822991,5823720,5827789	
chr2	5827858	5829394	5827890	5828119	+	Cre02.g111029.t1.2	Cre02.g111029.t1.2		5827858	5829394	
chr2	5829396	5835073	5831230	5834967	-	AMT7	Cre02.g111050.t1.1		5834755,5834564,5834340,5834059,5833707,5833322,5832890,5832493,5832065,5831665,5829396	5835073,5834574,5834416,5834147,5833848,5833454,5833025,5832641,5832210,5831848,5831415	Belongs to AMT1 family (Amt1;7 or Amt1:7); two different splicing variants have been found for this gene, this one is AMT7.a (Amt1;7a), the longest one (AY588244); was AMT1G.a; "belongs to AMT1 family (Amt1;7 or Amt1.7); two different splicing variants ha
chr2	5835228	5838359	5836432	5837117	+	Cre02.g111108.t1.2	Cre02.g111108.t1.2		5835228,5835824,5836217,5836565,5836975	5835678,5835907,5836443,5836804,5838359	
chr2	5838878	5845319	5838931	5844544	+	ELG26	Cre02.g111150.t1.1		5838878,5839272,5839616,5840035,5840310,5840606,5841059,5841330,5841620,5841851,5842228,5842531,5842910,5843126,5843674,5844119,5844435	5839112,5839360,5839726,5840130,5840419,5840820,5841146,5841416,5841666,5842020,5842350,5842629,5842929,5843284,5843893,5844258,5845319	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr2	5845324	5852257	5846674	5851727	-	Cre02.g111200.t1.1	Cre02.g111200.t1.1		5851679,5851534,5851403,5851094,5850621,5850301,5849786,5847526,5845324	5852257,5851595,5851448,5851107,5850632,5850421,5850056,5849420,5847325	
chr2	5845324	5852257	5846674	5851727	-	Cre02.g111200.t2.1	Cre02.g111200.t2.1		5851679,5851534,5851403,5851094,5850625,5850544,5850301,5849786,5847526,5845324	5852257,5851595,5851448,5851107,5850632,5850557,5850387,5850056,5849420,5847325	
chr2	5845324	5852407	5846674	5851727	-	Cre02.g111200.t3.1	Cre02.g111200.t3.1		5851679,5851534,5851403,5851094,5850625,5850544,5850301,5849786,5847526,5845324	5852407,5851595,5851448,5851107,5850632,5850557,5850387,5850056,5849420,5847325	
chr2	5853468	5854135	5853566	5853777	+	Cre02.g111250.t1.2	Cre02.g111250.t1.2		5853468	5854135	
chr2	5858403	5864117	5859271	5863974	-	Cre02.g111300.t1.1	Cre02.g111300.t1.1		5863745,5863571,5863021,5862752,5861220,5860751,5860144,5859476,5858403	5864117,5863591,5863053,5862793,5861527,5860882,5860499,5859819,5859271	
chr2	5858403	5864117	5859271	5863764	-	Cre02.g111300.t2.1	Cre02.g111300.t2.1		5863745,5863571,5863021,5862752,5861220,5860751,5860144,5859476,5858403	5864117,5863591,5863053,5862793,5861527,5860882,5860499,5859819,5859271	
chr2	5874792	5880677	5875719	5880539	-	Cre02.g111350.t1.2	Cre02.g111350.t1.2		5880494,5879887,5879489,5879098,5878711,5878452,5878218,5877911,5877578,5877318,5876838,5876510,5876171,5874792	5880677,5880163,5879708,5879306,5878895,5878536,5878280,5878025,5877759,5877459,5877075,5876655,5876348,5875839	
chr2	5880839	5884477	5880964	5883635	+	Cre02.g111400.t1.2	Cre02.g111400.t1.2		5880839,5881066,5881411,5881783,5882099,5882434,5882935,5883238,5883566	5880987,5881137,5881531,5881852,5882197,5882533,5883004,5883381,5884477	
chr2	5884601	5885327	5885093	5885274	-	Cre02.g111426.t1.1	Cre02.g111426.t1.1		5884601	5885327	
chr2	5885638	5888939	5885683	5887872	+	TEF4	Cre02.g111450.t1.2		5885638,5886222,5886470,5886744,5887150,5887436,5887827	5885870,5886307,5886525,5886886,5887224,5887578,5888939	Rhodanese-like protein, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr2	5892113	5902159	5893579	5901355	-	Cre02.g111500.t1.1	Cre02.g111500.t1.1		5901938,5901333,5901080,5900458,5900205,5899962,5899751,5899544,5899269,5898959,5892113	5902159,5901511,5901186,5900543,5900325,5900022,5899799,5899577,5899413,5899149,5898772	
chr2	5892113	5902159	5893579	5901355	-	Cre02.g111500.t2.1	Cre02.g111500.t2.1		5901938,5901333,5901080,5900458,5900205,5899962,5899751,5899544,5899269,5898959,5892113	5902159,5901501,5901186,5900543,5900325,5900022,5899799,5899577,5899413,5899149,5898772	
chr2	5903420	5906071	5903565	5903923	+	Cre02.g111526.t1.1	Cre02.g111526.t1.1		5903420	5906071	
chr2	5906280	5918969	5906632	5917717	+	Cre02.g111550.t1.1	Cre02.g111550.t1.1		5906280,5907142,5907520,5908046,5908212,5908611,5908897,5909630,5909817,5910089,5910460,5910733,5910991,5911406,5911664,5911890,5914238,5915546,5915949,5916198,5916443,5916632,5916890,5917057,5917338	5906747,5907293,5907714,5908090,5908429,5908748,5909484,5909690,5909876,5910279,5910569,5910800,5911231,5911518,5911755,5914038,5915432,5915727,5916039,5916277,5916510,5916695,5916910,5917106,5918969	
chr2	5918974	5920419	5919380	5920123	-	Cre02.g111600.t1.2	Cre02.g111600.t1.2		5920046,5919755,5918974	5920419,5919902,5919593	
chr2	5920473	5924799	5921379	5924578	-	CGL8	Cre02.g111650.t1.2		5923938,5923498,5922526,5920473	5924799,5923643,5923200,5922351	Conserved in the Green Lineage
chr2	5924848	5928326	5925394	5928038	-	EFH1	Cre02.g111700.t1.2		5928233,5927809,5927489,5926753,5926109,5925651,5924848	5928326,5928068,5927526,5926833,5926219,5925779,5925445	
chr2	5928461	5930193	5928588	5929430	+	Cre02.g111750.t1.2	Cre02.g111750.t1.2		5928461,5928862,5929301	5928693,5929068,5930193	
chr2	5930353	5933589	5930809	5933485	-	Cre02.g111800.t1.2	Cre02.g111800.t1.2		5933435,5933169,5932589,5932347,5931938,5931651,5930353	5933589,5933305,5932761,5932472,5932128,5931744,5931355	
chr2	5933730	5940145	5933954	5939415	+	Cre02.g111850.t1.1	Cre02.g111850.t1.1		5933730,5934189,5934482,5934773,5935071,5937124,5938758	5934009,5934296,5934603,5934932,5936988,5938573,5940145	
chr2	5941864	5944280	5941936	5943519	+	Cre02.g111900.t2.1	Cre02.g111900.t2.1		5941864,5942055,5942312,5942678,5943286	5941967,5942177,5942368,5942809,5944280	
chr2	5941720	5944279	5941936	5943519	+	Cre02.g111900.t1.1	Cre02.g111900.t1.1		5941720,5942055,5942312,5942678,5943286	5941967,5942177,5942368,5942809,5944279	
chr2	5945990	5957890	5946081	5955498	+	Cre02.g111950.t1.1	Cre02.g111950.t1.1		5945990,5946472,5946867,5947185,5947791,5948321,5948589,5949324,5949637,5949945,5950267,5950549,5950872,5951178,5952209,5952497,5953483,5953701,5954106,5954360,5954634,5954892,5955236	5946373,5946556,5946950,5947585,5947928,5948380,5949182,5949490,5949661,5950027,5950373,5950610,5950965,5952053,5952299,5953327,5953556,5953878,5954207,5954459,5954758,5954989,5957890	
chr2	5958804	5963089	5959458	5962543	-	AOT7	Cre02.g112000.t1.1		5962803,5962460,5961985,5961680,5961399,5961159,5960924,5960631,5960339,5960055,5958804	5963089,5962686,5962165,5961775,5961512,5961284,5960987,5960791,5960464,5960153,5959884	belongs to AAAP family of amino acid/auxin permeases; most similar to animal and protist relatives
chr2	5963569	5968479	5964552	5968250	-	Cre02.g112050.t1.1	Cre02.g112050.t1.1		5968228,5968047,5967365,5967103,5966889,5966558,5964942,5963569	5968479,5968144,5967785,5967158,5966939,5966678,5966452,5964780	
chr2	5968657	5973722	5968960	5973564	-	FAP101	Cre02.g112100.t1.1		5973442,5972864,5972369,5971994,5971758,5971499,5971126,5970865,5970534,5970035,5969713,5968657	5973722,5973224,5972598,5972219,5971877,5971629,5971285,5970969,5970689,5970259,5969829,5969515	Flagellar Associated Protein with weak similarity to a kinase regulatory subunit; also known as C1a-86; form the C1a projection, with PF6, C1a-34, C1a-32, C1a-18, and calmodulin;  may play a role in modulating both inner and outer dynein arm activity
chr2	5974250	5979691	5974460	5979033	+	Cre02.g112150.t1.2	Cre02.g112150.t1.2		5974250,5975038,5975338,5975569,5976100,5976848,5977199,5977687,5978073,5978282,5978588,5978817	5974834,5975184,5975440,5975924,5976570,5976937,5977388,5977843,5978142,5978395,5978669,5979691	
chr2	5979693	5994259	5980526	5993388	-	Cre02.g112200.t1.2	Cre02.g112200.t1.2		5993985,5993348,5992603,5991956,5991587,5991302,5990957,5990448,5990044,5989646,5989246,5989035,5988732,5988473,5987976,5986070,5985470,5984984,5984667,5984319,5983976,5983673,5983377,5983026,5982683,5979693	5994259,5993449,5993069,5992362,5991869,5991457,5991169,5990817,5990350,5989903,5989479,5989152,5988896,5988595,5988356,5987833,5985832,5985268,5984792,5984477,5984149,5983764,5983518,5983152,5982842,5982573	
chr2	5994376	5999261	5994613	5998385	+	CAL2	Cre02.g112250.t1.2		5994376,5994990,5995248,5995435,5995689,5996047,5996359,5996617,5996905,5997148,5997419,5997733,5997963,5998195	5994747,5995083,5995330,5995493,5995789,5996244,5996451,5996727,5996994,5997212,5997488,5997779,5998016,5999261	
chr2	5999264	6003959	5999293	6003644	-	Cre02.g112266.t1.2	Cre02.g112266.t1.2		6003578,6003281,6002335,6000443,5999264	6003959,6003355,6003120,6002158,6000304	
chr2	6004470	6010763	6005148	6010639	-	MOT15	Cre02.g112300.t1.1		6010628,6010318,6009921,6009535,6009269,6009059,6008679,6008268,6007892,6007437,6007028,6006724,6006383,6006163,6005796,6005615,6005412,6004470	6010763,6010411,6010003,6009632,6009297,6009130,6008785,6008355,6007990,6007589,6007117,6006788,6006452,6006209,6005838,6005625,6005501,6005248	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr2	6011184	6017345	6012954	6017056	-	Cre02.g112333.t1.1	Cre02.g112333.t1.1		6014962,6014619,6014265,6013935,6013543,6011184	6017345,6014774,6014384,6014006,6013656,6013380	
chr2	6017492	6018575	6017792	6018087	-	Cre02.g112366.t1.1	Cre02.g112366.t1.1		6017492	6018575	
chr2	6018860	6023095	6019422	6023004	-	CHI1	Cre02.g112400.t1.1		6022878,6022625,6022276,6022053,6021787,6021504,6021270,6020989,6020720,6020319,6019816,6018860	6023095,6022745,6022346,6022127,6021870,6021563,6021326,6021033,6020790,6020470,6019916,6019647	
chr2	6023142	6026155	6024397	6025550	-	Cre02.g112433.t1.1	Cre02.g112433.t1.1		6025745,6025521,6024839,6023142	6026155,6025591,6024926,6024670	
chr2	6023142	6026155	6024397	6025550	-	Cre02.g112433.t2.1	Cre02.g112433.t2.1		6025740,6025521,6024839,6023142	6026155,6025591,6024926,6024670	
chr2	6026336	6032507	6027100	6031205	+	Cre02.g112500.t1.1	Cre02.g112500.t1.1		6026336,6027429,6029669,6030018,6030289,6030579,6030857	6027212,6029383,6029782,6030122,6030360,6030692,6032507	
chr2	6034996	6048817	6035730	6047622	+	Cre02.g112550.t1.2	Cre02.g112550.t1.2		6034996,6036089,6036495,6037007,6037438,6037760,6038015,6038307,6038755,6039067,6039527,6039862,6040195,6040600,6040824,6041178,6041584,6041899,6042187,6042557,6042937,6046197,6046654,6047052,6047493	6035793,6036192,6036696,6037162,6037515,6037825,6038117,6038491,6038900,6039358,6039665,6039989,6040308,6040692,6040976,6041411,6041750,6042025,6042409,6042743,6045977,6046477,6046881,6047180,6048817	
chr2	6048866	6053227	6049022	6052535	+	Cre02.g112600.t1.2	Cre02.g112600.t1.2		6048866,6049581,6049925,6050154,6050609,6051174,6051550,6051833,6052376	6049112,6049770,6050032,6050217,6050710,6051428,6051624,6052118,6053227	
chr2	6053230	6055555	6053807	6055446	-	Cre02.g112650.t1.2	Cre02.g112650.t1.2		6055298,6054818,6054549,6054074,6053230	6055555,6054882,6054599,6054214,6053834	
chr2	6055870	6061225	6056118	6060847	-	Cre02.g112701.t1.1	Cre02.g112701.t1.1		6060386,6060147,6059831,6059404,6059160,6058758,6058556,6058223,6057914,6057562,6056794,6055870	6061225,6060254,6059926,6059704,6059267,6058970,6058598,6058365,6058033,6057675,6057339,6056718	
chr2	6061280	6069285	6061703	6069072	-	Cre02.g112750.t1.2	Cre02.g112750.t1.2		6068942,6068668,6068451,6068181,6064953,6064601,6063871,6063317,6062913,6062432,6061280	6069285,6068822,6068517,6068283,6067918,6064758,6064436,6063774,6063192,6062697,6062245	
chr2	6069509	6073995	6069897	6073790	-	Cre02.g112800.t1.1	Cre02.g112800.t1.1		6073553,6073312,6072760,6072323,6071885,6071462,6069509	6073995,6073417,6073076,6072562,6072129,6071615,6071220	
chr2	6074096	6077217	6074334	6077192	+	COQ6	Cre02.g112850.t1.1		6074096,6074461,6074685,6074989,6075560,6075944,6076295,6076673,6077081	6074365,6074510,6074825,6075273,6075707,6076104,6076506,6076916,6077217	putative mitochondrial flavin-dependent monoxygenase required for coenzyme Q biosynthesis [PMID: 12721307] (UbiH)
chr2	6077220	6080745	6078248	6080369	-	Cre02.g112900.t1.2	Cre02.g112900.t1.2		6080032,6079511,6077220	6080745,6079626,6079319	
chr2	6080896	6083107	6081344	6082976	+	Cre02.g112950.t1.2	Cre02.g112950.t1.2		6080896,6081288,6081452,6081700,6082090,6082389,6082596,6082790	6081066,6081347,6081533,6081836,6082218,6082472,6082652,6083107	
chr2	6083117	6086275	6083770	6086166	-	Cre02.g113000.t1.2	Cre02.g113000.t1.2		6086147,6085843,6085529,6085323,6084906,6084687,6084476,6084193,6083994,6083117	6086275,6085851,6085600,6085412,6084923,6084779,6084535,6084248,6084063,6083793	
chr2	6086416	6089119	6086480	6088633	+	Cre02.g113050.t1.2	Cre02.g113050.t1.2		6086416,6086842,6087333,6087713,6087988,6088459	6086621,6087084,6087599,6087772,6088110,6089119	
chr2	6090101	6092235	6091016	6092125	-	Cre02.g113100.t1.2	Cre02.g113100.t1.2		6092029,6091842,6091528,6090101	6092235,6091896,6091571,6091172	
chr2	6092366	6097783	6092613	6096855	+	Cre02.g113150.t1.2	Cre02.g113150.t1.2		6092366,6092819,6093215,6094040,6095437,6096219,6096706	6092658,6092992,6093850,6095046,6096013,6096555,6097783	
chr2	6098426	6103996	6098573	6103211	+	GLN1	Cre02.g113200.t1.1		6098426,6098643,6099119,6099467,6100003,6100511,6100943,6101247,6101580,6102359,6102938	6098576,6098790,6099232,6099556,6100060,6100661,6101046,6101364,6101767,6102623,6103996	glutamine synthetase (EC 6.3.1.2), CO2-responsive gene; glutamine synthetase, cytosolic isozyme (Glutamate--ammonia ligase) (GS1), CO2-responsive gene; identical to GLNA1_CHLRE cDNA [Swissprot Q42688), PMID: 8938407]
chr2	6105253	6109155	6105593	6108866	-	Cre02.g113250.t1.1	Cre02.g113250.t1.1		6108821,6108258,6107824,6107406,6107009,6106646,6105253	6109155,6108656,6107967,6107506,6107155,6106787,6106316	
chr2	6109286	6114697	6109654	6114314	+	OPR6	Cre02.g113300.t1.1		6109286,6109612,6109811	6109459,6109675,6114697	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 43 codons at 5'-end: MSTQILSQNLETGTGLFARTVAWLQSRNRQHAPLLSPSPLAAA
chr2	6114710	6125125	6116340	6124930	-	Cre02.g113350.t1.2	Cre02.g113350.t1.2		6124633,6124200,6123829,6122113,6121709,6121417,6119519,6119087,6117393,6116931,6114710	6125125,6124296,6124016,6123648,6121878,6121521,6121139,6119222,6118919,6117084,6116620	
chr2	6126801	6128495	6128072	6128441	-	Cre02.g113376.t1.1	Cre02.g113376.t1.1		6128421,6126801	6128495,6128247	
chr2	6129022	6131674	6129229	6130870	+	Cre02.g113400.t1.2	Cre02.g113400.t1.2		6129022,6129419,6129592,6130119,6130828	6129331,6129525,6129820,6130562,6131674	
chr2	6132506	6139896	6132836	6137874	+	Cre02.g113450.t1.1	Cre02.g113450.t1.1		6132506,6133698,6134308,6134901,6136957	6133124,6133705,6134786,6136832,6139896	
chr2	6140650	6149565	6140810	6149468	-	Cre02.g113500.t1.2	Cre02.g113500.t1.2		6148892,6148610,6148313,6147923,6147521,6147055,6146629,6146415,6145894,6145546,6145082,6144674,6144428,6144230,6143995,6143624,6143061,6142741,6142465,6142205,6141950,6141760,6141313,6140650	6149565,6148739,6148463,6148072,6147696,6147346,6146788,6146473,6145942,6145662,6145197,6144785,6144484,6144273,6144023,6143727,6143372,6142846,6142547,6142271,6142034,6141808,6141475,6141097	
chr2	6149820	6153931	6150344	6153774	-	Cre02.g113550.t1.2	Cre02.g113550.t1.2		6153717,6153552,6153300,6152858,6152554,6152332,6152009,6151675,6151449,6151204,6150909,6150653,6149820	6153931,6153655,6153390,6152944,6152597,6152383,6152118,6151717,6151520,6151245,6150981,6150700,6150454	
chr2	6154135	6159875	6155476	6159656	-	Cre02.g113600.t1.2	Cre02.g113600.t1.2		6159633,6159504,6158022,6157646,6157141,6156875,6156506,6155960,6155739,6154135	6159875,6159538,6159364,6157798,6157307,6156981,6156667,6156286,6155806,6155569	
chr2	6164120	6167705	6164676	6167565	-	Cre02.g113626.t1.1	Cre02.g113626.t1.1		6165978,6164120	6167705,6165798	
chr2	6167916	6171345	6168284	6170878	-	Cre02.g113652.t1.1	Cre02.g113652.t1.1		6170828,6170349,6169950,6169628,6169391,6169165,6168613,6167916	6171345,6170597,6170149,6169703,6169445,6169245,6168717,6168431	
chr2	6167916	6171345	6168284	6170878	-	Cre02.g113652.t2.1	Cre02.g113652.t2.1		6171089,6170828,6170349,6169950,6169628,6169391,6169165,6168613,6167916	6171345,6170963,6170597,6170149,6169703,6169445,6169245,6168717,6168431	
chr2	6171630	6175354	6172455	6175074	-	Cre02.g113700.t1.2	Cre02.g113700.t1.2		6175034,6174856,6174549,6174211,6173805,6173371,6173039,6172750,6171630	6175354,6174923,6174632,6174356,6173908,6173528,6173105,6172900,6172537	
chr2	6175485	6178856	6175623	6178527	+	Cre02.g113750.t1.1	Cre02.g113750.t1.1		6175485,6176095,6176415,6176986,6177307,6177666,6177902	6175797,6176264,6176742,6177177,6177450,6177790,6178856	
chr2	6178915	6182556	6179006	6182409	+	Cre02.g113751.t1.2	Cre02.g113751.t1.2		6178915,6179455,6179746,6180261,6180768,6181428,6181922	6179171,6179624,6180088,6180452,6180911,6181552,6182556	
chr2	6182625	6190686	6182797	6190313	+	Cre02.g113752.t1.2	Cre02.g113752.t1.2		6182625,6186268,6186561,6187023,6187646,6188139,6188690,6189351,6189698,6190121	6186025,6186360,6186695,6187142,6187768,6188461,6188864,6189398,6189796,6190686	
chr2	6190735	6192686	6190991	6192395	+	Cre02.g113800.t1.1	Cre02.g113800.t1.1		6190735,6190969,6191221,6191610,6191846,6192293	6190856,6191094,6191359,6191673,6191920,6192686	
chr2	6195415	6199506	6195489	6199284	+	Cre02.g113809.t1.2	Cre02.g113809.t1.2		6195415,6195797,6197401,6198480,6198988	6195526,6197178,6198219,6198756,6199506	
chr2	6199517	6204374	6200484	6204124	-	PBGD2	Cre02.g113850.t1.1		6203887,6203568,6203282,6202860,6202101,6201805,6201414,6200874,6199517	6204374,6203646,6203349,6203004,6202183,6201889,6201675,6201083,6200641	Porphobilinogen deaminase, chloroplast precursor; Hydroxymethylbilane synthase; Pre-uroporphyrinogen synthase; PBGD; HMBS; HEM3; HEMC; Predicted chloroplast transit peptide 1-53 [PMID: 1986793; PMID: 8192681]
chr2	6204479	6207566	6204708	6207415	+	Cre02.g113900.t1.1	Cre02.g113900.t1.1		6204479,6205065,6205546,6205993,6206222,6206568,6207105	6204881,6205159,6205649,6206031,6206374,6206929,6207566	
chr2	6207615	6210608	6207718	6210267	+	Cre02.g113950.t1.1	Cre02.g113950.t1.1		6207615,6208014,6208360,6208691,6209001,6209498,6210017	6207888,6208108,6208454,6208729,6209291,6209877,6210608	
chr2	6210750	6216404	6211391	6216350	-	Cre02.g114000.t1.1	Cre02.g114000.t1.1		6216299,6216144,6215866,6215502,6210750	6216404,6216238,6215995,6215611,6215340	
chr2	6216454	6223254	6216601	6223074	-	Cre02.g114001.t1.2	Cre02.g114001.t1.2		6222138,6221276,6220763,6220164,6218906,6216454	6223254,6221793,6220853,6220319,6219943,6218398	
chr2	6223346	6228065	6223540	6227594	+	Cre02.g114050.t1.1	Cre02.g114050.t1.1		6223346,6223993,6225191,6225566,6226845,6227330	6223781,6224954,6225316,6226560,6226974,6228065	
chr2	6228399	6240724	6230660	6240251	-	PDE22	Cre02.g114100.t1.1		6240245,6239774,6239487,6239026,6238713,6238371,6238045,6237609,6237366,6237048,6236701,6233176,6232873,6232480,6232105,6231644,6231280,6231008,6228399	6240724,6239902,6239651,6239242,6238811,6238603,6238140,6237847,6237417,6237102,6236828,6236513,6233035,6232677,6232322,6231890,6231453,6231094,6230777	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase. Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus
chr2	6240799	6249904	6241381	6249517	-	Cre02.g114150.t1.1	Cre02.g114150.t1.1		6249639,6249487,6246927,6246253,6244717,6244368,6240799	6249904,6249549,6249311,6246553,6245981,6244488,6244191	
chr2	6250425	6255980	6250524	6255498	+	CSK3	Cre02.g114200.t1.1		6250425,6250733,6250952,6251702,6252156,6252491,6252809,6253187,6253552,6254012,6254845,6255449	6250653,6250789,6251044,6251794,6252249,6252581,6252912,6253314,6253855,6254424,6255041,6255980	
chr2	6255999	6261064	6256460	6260860	-	MEN2	Cre02.g114250.t1.2		6260530,6260252,6259497,6259145,6258409,6258086,6257722,6257384,6257070,6256763,6255999	6261064,6260300,6259565,6259251,6258504,6258127,6257856,6257424,6257148,6256828,6256523	Putative naphthoate synthase [=menB]. Evolutionarily related to enoyl-CoA hydratase/isomerase
chr2	6261165	6265326	6261394	6265185	+	Cre02.g114300.t1.1	Cre02.g114300.t1.1		6261165,6261966,6262829,6263112,6263584,6263936,6264287,6264647	6261813,6262509,6262938,6263132,6263695,6264031,6264414,6265326	
chr2	6265329	6268328	6266549	6268066	-	Cre02.g114350.t1.2	Cre02.g114350.t1.2		6268030,6267497,6265329	6268328,6267910,6267227	
chr2	6268375	6272034	6269087	6271883	-	LAS2	Cre02.g114400.t1.2		6271209,6270734,6270414,6269979,6269591,6268375	6272034,6270863,6270518,6270065,6269680,6269294	catalytic/ iron ion binding; lipoate synthase; lipoic acid synthase
chr2	6272163	6274909	6272296	6274357	+	Cre02.g114450.t1.2	Cre02.g114450.t1.2		6272163,6272985,6273313,6273575,6274264	6272566,6273011,6273366,6273676,6274909	
chr2	6274940	6280584	6276059	6280106	-	Cre02.g114500.t1.2	Cre02.g114500.t1.2		6280371,6279991,6279442,6279095,6278716,6277825,6277049,6274940	6280584,6280110,6279530,6279349,6278926,6278571,6277690,6276889	
chr2	6284479	6285254	6284795	6285167	-	Cre02.g114550.t1.2	Cre02.g114550.t1.2		6284931,6284479	6285254,6284795	
chr2	6286675	6288756	6286901	6287935	+	Cre02.g114575.t1.1	Cre02.g114575.t1.1		6286675,6287119,6287299,6287575	6286983,6287207,6287421,6288756	
chr2	6290309	6292284	6290735	6292246	-	PRX2	Cre02.g114600.t1.2		6292153,6291943,6291769,6291459,6291271,6291045,6290309	6292284,6292018,6291803,6291584,6291320,6291153,6290843	thioredoxin dependent peroxidase, probably cytosolic, more closely related to mammalian peroxiredoxins than to plant peroxiredoxins. Found in the flagellar proteome [PMID: 15998802].
chr2	6292406	6295517	6293094	6295425	-	Cre02.g114650.t1.1	Cre02.g114650.t1.1		6295289,6295075,6294561,6294235,6294023,6293799,6293586,6293321,6292406	6295517,6295171,6294909,6294311,6294103,6293877,6293639,6293397,6293131	
chr2	6295659	6297428	6295770	6297133	+	RSP12	Cre02.g114700.t1.2		6295659,6296231,6296486,6296748,6297023	6295950,6296312,6296583,6296823,6297428	peptidyl-prolyl cis-trans isomerase, cyclophilin-type; found in the flagellum radial spoke stalk (RSP12) [PMID: 16507594]
chr2	6297945	6306066	6298201	6305191	+	Cre02.g114750.t1.2	Cre02.g114750.t1.2		6297945,6298651,6299014,6299311,6299562,6299858,6300222,6300498,6300887,6301192,6301619,6302047,6302313,6302634,6302941,6303305,6303610	6298385,6298744,6299068,6299338,6299641,6299957,6300277,6300576,6300987,6301296,6301777,6302154,6302408,6302765,6303038,6303374,6306066	Calcium/calmodulin-dependent protein kinase
chr2	6306069	6308134	6306276	6307972	-	Cre02.g114800.t1.2	Cre02.g114800.t1.2		6307947,6307757,6307524,6306764,6306069	6308134,6307877,6307637,6307308,6306276	
chr2	6308379	6314324	6308958	6314184	-	Cre02.g114850.t1.2	Cre02.g114850.t1.2		6313422,6312971,6312510,6312029,6311258,6310935,6310508,6310243,6309965,6309545,6308379	6314324,6313088,6312764,6312185,6311922,6311035,6310757,6310321,6310055,6309670,6309231	
chr2	6314443	6320296	6314852	6319595	+	ANK23	Cre02.g114900.t1.1		6314443,6315067,6315263,6316076,6316324,6316638,6317023,6317269,6317515,6317855,6318277,6319458	6314913,6315141,6315774,6316138,6316389,6316748,6317094,6317385,6317589,6318067,6319294,6320296	protein of unknown function with ankyrin repeats
chr2	6320299	6322184	6320509	6322042	-	Cre02.g114950.t1.1	Cre02.g114950.t1.1		6321966,6320950,6320299	6322184,6321800,6320677	
chr2	6322248	6324594	6322607	6324554	-	Cre02.g115000.t1.1	Cre02.g115000.t1.1		6324488,6324005,6323107,6322248	6324594,6324307,6323885,6322848	
chr2	6324705	6327586	6324807	6327120	+	RSEP3	Cre02.g115050.t1.2		6324705,6325074,6325358,6325726,6326089,6326498,6326871	6324928,6325195,6325463,6325901,6326195,6326591,6327586	Intramembrane metalloprotease related to site-2 protease; contains M5 domain, with HExxH motif embedded in transmembrane helix; homologous to bacterial RseP/YaeL/PsoIVFB involved in transmembrane signaling; does not appear to be organelle-targetted
chr2	6327589	6331034	6328138	6330770	-	Cre02.g115100.t1.1	Cre02.g115100.t1.1		6330413,6330066,6329036,6327589	6331034,6330244,6329924,6328546	
chr2	6331970	6335083	6332329	6334194	+	Cre02.g115150.t1.1	Cre02.g115150.t1.1		6331970,6332621,6332900,6333147,6333471,6334076	6332482,6332692,6333018,6333334,6333669,6335083	
chr2	6331970	6335083	6332329	6334194	+	Cre02.g115150.t2.1	Cre02.g115150.t2.1		6331970,6332621,6332900,6333147,6333471,6334079	6332482,6332692,6333018,6333334,6333669,6335083	
chr2	6335219	6338024	6335760	6337964	-	RPL27A	Cre02.g115200.t1.2		6337954,6337595,6337210,6335219	6338024,6337749,6337299,6335949	Cytosolic 60S large ribosomal subunit protein L27a
chr2	6338125	6338481	6338238	6338407	+	Cre02.g115226.t1.1	Cre02.g115226.t1.1		6338125	6338481	
chr2	6339475	6342444	6339786	6342318	-	POC1	Cre02.g115250.t1.1		6342264,6342021,6341809,6341596,6341298,6340948,6340665,6339475	6342444,6342188,6341900,6341704,6341447,6341175,6340784,6340545	Found in basal body proteome [PMID: 15964273].
chr2	6342575	6351166	6342795	6351105	+	AOT6	Cre02.g115300.t1.1		6342575,6342930,6343060,6343259,6343594,6343938,6344217,6344458,6344882,6345289,6345627,6346129,6346476,6346735,6347069,6347373,6347589,6348167,6348581,6348929,6350253,6350464	6342859,6342964,6343138,6343429,6343749,6344011,6344289,6344615,6345087,6345462,6345937,6346309,6346557,6346896,6347194,6347447,6347925,6348318,6348700,6350077,6350322,6351166	belongs to AAAP family of amino acid/auxin permeases; most similar to animal relatives; contains a large C-terminal domain of unknown function
chr2	6351175	6357184	6351660	6356569	-	Cre02.g115350.t1.2	Cre02.g115350.t1.2		6356416,6356089,6355496,6355355,6354847,6353316,6353026,6352785,6352297,6352013,6351175	6357184,6356167,6355563,6355394,6355103,6354647,6353120,6352878,6352376,6352176,6351848	
chr2	6359258	6380094	6359975	6379018	+	Cre02.g115400.t1.1	Cre02.g115400.t1.1		6359258,6360227,6360579,6360893,6361100,6361387,6361807,6362078,6362403,6362727,6362976,6363225,6363685,6364095,6364400,6364683,6365129,6365461,6365691,6365985,6366252,6366715,6367563,6367884,6368549,6369034,6369376,6370241,6370482,6371390,6371760,6372087,6373165,6373414,6373605,6374271,6374762,6375063,6375337,6378094	6360062,6360299,6360701,6360927,6361235,6361535,6361918,6362268,6362471,6362822,6363038,6363425,6363867,6364286,6364519,6364945,6365321,6365538,6365891,6366079,6366552,6367448,6367743,6368408,6368899,6369282,6370062,6370399,6371297,6371632,6371935,6372952,6373276,6373447,6374069,6374534,6374941,6375146,6377958,6380094	
chr2	6380102	6394397	6382237	6393562	-	CYG47	Cre02.g115450.t1.1		6393878,6393414,6392730,6392424,6388347,6388052,6385794,6383794,6383496,6383037,6382661,6380102	6394397,6393593,6393035,6392503,6392269,6388196,6387863,6385420,6383561,6383315,6382833,6382456	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr2	6394912	6397627	6395486	6397314	-	Cre02.g115500.t1.2	Cre02.g115500.t1.2		6397167,6396803,6396561,6396267,6395992,6394912	6397627,6397010,6396651,6396471,6396051,6395861	
chr2	6397682	6403287	6397727	6402652	-	Cre02.g115508.t1.1	Cre02.g115508.t1.1		6402898,6402618,6402040,6400958,6400607,6400124,6399902,6399468,6399087,6398697,6398298,6397682	6403287,6402790,6402424,6401798,6400719,6400405,6399973,6399765,6399335,6398831,6398528,6398075	
chr2	6406558	6410166	6406852	6408886	+	Cre02.g115550.t1.2	Cre02.g115550.t1.2		6406558,6407132,6407544,6407866,6408418,6408838	6406874,6407265,6407763,6408027,6408596,6410166	
chr2	6411063	6413387	6411607	6412842	-	Cre02.g115567.t1.1	Cre02.g115567.t1.1		6413209,6412537,6411959,6411063	6413387,6412951,6412400,6411607	
chr2	6413498	6414043	6413546	6413793	+	Cre02.g115583.t1.1	Cre02.g115583.t1.1		6413498	6414043	
chr2	6417088	6426333	6417129	6425450	+	MSC7	Cre02.g115600.t1.1		6417088,6417499,6417870,6418207,6418554,6419036,6421397,6422072,6422359,6422735,6423169,6423481,6423853,6424369,6424659,6424961	6417318,6417594,6417923,6418299,6418694,6421108,6421861,6422144,6422493,6422876,6423227,6423634,6423896,6424519,6424734,6426333	protein of unknown function with mechanosensitive ion channel (MSC) like domain
chr2	6427458	6429489	6427637	6429374	+	FBA4	Cre02.g115650.t1.2		6427458,6428192,6428434,6428763,6429060,6429242	6427955,6428284,6428568,6428926,6429144,6429489	Fructose-1,6-bisphosphate aldolase-like protein; aldehyde-lyase (EC 4.1.2.13); possibly cytosolic based on similarity to Solanum tuberosum aldolase-like protein (GenBank ABC01905); glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate
chr2	6429492	6431277	6430629	6431173	-	Cre02.g115700.t1.2	Cre02.g115700.t1.2		6431125,6430975,6429492	6431277,6431037,6430692	
chr2	6431408	6435259	6431454	6434130	+	GPD9	Cre02.g115750.t1.1		6431408,6431755,6432170,6432437,6432693,6433086,6433496,6433885	6431558,6431935,6432277,6432529,6432833,6433218,6433756,6435259	
chr2	6435308	6437643	6435364	6437395	+	Cre02.g115800.t1.1	Cre02.g115800.t1.1		6435308,6435613,6435834,6436260,6436512,6436802,6437156	6435386,6435675,6436011,6436354,6436591,6436922,6437643	
chr2	6437880	6441867	6439816	6441835	-	Cre02.g115850.t1.2	Cre02.g115850.t1.2		6441795,6441455,6441140,6440879,6440549,6440255,6437880	6441867,6441517,6441317,6440970,6440628,6440375,6440046	
chr2	6441914	6444437	6442435	6444358	-	Cre02.g115900.t1.2	Cre02.g115900.t1.2		6444312,6443994,6443688,6443427,6443174,6442880,6441914	6444437,6444056,6443865,6443518,6443253,6443000,6442671	
chr2	6445098	6449097	6445302	6447764	+	Cre02.g115950.t1.2	Cre02.g115950.t1.2		6445098,6445525,6445797,6446075,6446495,6446795,6447112,6447678	6445366,6445665,6445894,6446243,6446599,6446893,6447330,6449097	
chr2	6449102	6451188	6449124	6451099	-	Cre02.g116000.t1.1	Cre02.g116000.t1.1		6450754,6450252,6449946,6449626,6449249,6449102	6451188,6450318,6450121,6449696,6449411,6449136	null-allele mutant was isolated (PMID 29743196)
chr2	6451692	6461557	6453513	6461208	-	Cre02.g116050.t1.1	Cre02.g116050.t1.1		6460728,6460427,6458870,6456770,6454730,6454445,6454052,6451692	6461557,6460592,6460293,6458703,6456573,6454540,6454263,6453870	
chr2	6461845	6477107	6463320	6476894	-	Cre02.g116100.t1.1	Cre02.g116100.t1.1		6476606,6476319,6475741,6475421,6474934,6474491,6473936,6473510,6472663,6472367,6471301,6470837,6469232,6468795,6468273,6466619,6466284,6464067,6463684,6461845	6477107,6476362,6475789,6475531,6475081,6474690,6474334,6473687,6473338,6472565,6471862,6471117,6470524,6468959,6468587,6468109,6466475,6466148,6463923,6463491	
chr2	6477512	6483317	6478654	6483203	-	Cre02.g116150.t1.1	Cre02.g116150.t1.1		6480828,6480611,6480377,6480068,6479781,6477512	6483317,6480675,6480441,6480216,6479901,6479410	
chr2	6483376	6484757	6483655	6484637	-	Cre02.g116200.t1.2	Cre02.g116200.t1.2		6484407,6483994,6483376	6484757,6484173,6483788	
chr2	6484859	6486800	6485024	6486463	+	Cre02.g116250.t1.1	Cre02.g116250.t1.1		6484859,6485276,6485702,6485946,6486133,6486382	6485057,6485524,6485788,6486020,6486186,6486800	
chr2	6486848	6489549	6486919	6488750	+	Cre02.g116300.t1.2	Cre02.g116300.t1.2		6486848,6487113,6487471,6488111,6488708	6487042,6487198,6487526,6488172,6489549	
chr2	6489628	6493506	6489655	6492933	+	Cre02.g116350.t1.2	Cre02.g116350.t1.2		6489628,6490091,6490526,6490889,6491283,6491547,6491986,6492265,6492476,6492833	6489835,6490203,6490613,6490935,6491376,6491708,6492062,6492290,6492560,6493506	
chr2	6493819	6496780	6494109	6496587	-	DII7	Cre02.g116400.t1.1		6496523,6496349,6496147,6495958,6495498,6494854,6494459,6493819	6496780,6496413,6496205,6496009,6495674,6495074,6494606,6494208	Part of IC138 subcomplex (PubMed ID:19021242 Ikeda et al. Kamiya 2009) and (PubMed ID:19420135 Bower et al. Porter 2009)(PubMed ID:21953912 Hom et al. King 2011); null-allele mutant was isolated (PMID 29743196)
chr2	6496888	6499499	6497139	6499070	+	RPE2	Cre02.g116450.t1.2		6496888,6497571,6497954,6498520,6498902	6497295,6497690,6498178,6498627,6499499	D-Ribulose-5-Phosphate 3-Epimerase (EC 2.7.1.19); Ribulose Phosphate epimerase; probable cytosolic form
chr2	6499550	6505579	6499650	6504410	+	Cre02.g116500.t1.1	Cre02.g116500.t1.1		6499550,6500143,6500303,6500703,6501109,6501375,6501671,6502058,6502378,6502821,6503182,6503583,6503940,6504278	6499974,6500189,6500415,6500821,6501156,6501437,6501725,6502167,6502478,6502941,6503271,6503680,6504048,6505579	
chr2	6505728	6510907	6505803	6510523	+	DNJ24	Cre02.g116550.t1.2		6505728,6506389,6506721,6507161,6507477,6507785,6508145,6508476,6508809,6509285,6509554,6510081	6506103,6506505,6506975,6507298,6507583,6507905,6508264,6508562,6509171,6509383,6509864,6510907	DnaJ-like protein, perhaps targeted to the chloroplast (contains N-terminal extension that is predicted by ChloroP to be chloroplast transit peptide); contains N-terminal J-domain (pfam226) and NADPH:quinone reductase and related Zn-dependent oxidoreduc
chr2	6511045	6516819	6511110	6516377	+	ELG23	Cre02.g116600.t1.2		6511045,6511352,6511601,6512617,6513004,6513436,6513760,6514190,6514638,6515067,6515475,6515727,6516195	6511253,6511536,6511736,6512707,6513145,6513581,6513963,6514401,6514795,6515192,6515627,6515987,6516819	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr2	6511045	6516819	6511110	6516377	+	ELG23	Cre02.g116600.t2.1		6511045,6511352,6511601,6512617,6513004,6513436,6513760,6514190,6514638,6515067,6516195	6511253,6511536,6511736,6512707,6513145,6513581,6513963,6514401,6514795,6515192,6516819	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr2	6517046	6519406	6517329	6518644	+	Cre02.g116650.t1.2	Cre02.g116650.t1.2		6517046,6517667,6518217,6518554	6517401,6517753,6518366,6519406	
chr2	6519455	6525527	6519652	6523615	+	PTK11	Cre02.g116700.t1.2		6519455,6519798,6520647,6520947,6521211,6521575,6521940,6522283,6522506,6522845,6523119,6523396	6519717,6520385,6520675,6521020,6521323,6521761,6522020,6522348,6522670,6522956,6523267,6525527	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr2	6525910	6530624	6526628	6529965	-	ATP1A	Cre02.g116750.t1.1		6530180,6529931,6529800,6529678,6529371,6528866,6528032,6527580,6527074,6525910	6530624,6530003,6529833,6529717,6529595,6529124,6528357,6527844,6527402,6526826	alpha subunit of the mitochondrial ATP synthase [= human ATP5A1, yeast ATP1]; part of the F1 sector; isoform of ATP1B
chr2	6525910	6530253	6526628	6529965	-	ATP1A	Cre02.g116750.t2.1		6530180,6529931,6529800,6529678,6529371,6528866,6528032,6527580,6527074,6525910	6530253,6530003,6529833,6529717,6529595,6529124,6528357,6527844,6527402,6526826	alpha subunit of the mitochondrial ATP synthase [= human ATP5A1, yeast ATP1]; part of the F1 sector; isoform of ATP1B
chr2	6532089	6538684	6532442	6538617	-	Cre02.g116800.t1.1	Cre02.g116800.t1.1		6538421,6538027,6537420,6537039,6536645,6536110,6535737,6535431,6535133,6534718,6534297,6532089	6538684,6538160,6537752,6537164,6536824,6536200,6535843,6535481,6535218,6534896,6534418,6533852	
chr2	6538795	6542306	6538831	6541996	+	HLM6	Cre02.g116850.t1.2		6538795,6539840,6540229,6541453,6541733	6539425,6539950,6541209,6541618,6542306	Protein contains an interrupted SET domain with very weak similarity to Arabidopsis thaliana ASHR2, SET39, SDG39 (At2g19640) and Zea mays SET123; linked to histone deacetylase HDA1
chr2	6542355	6544896	6542478	6544638	+	SETB	Cre02.g116900.t1.2		6542355,6543055,6543743,6543956,6544170,6544380,6544584	6542822,6543085,6543802,6544015,6544229,6544439,6544896	Protein contains an interrupted SET domain with very weak similarity to Arabidopsis thaliana ASHR2, SET39, SDG39 (At2g19640) and Zea mays SET123.
chr2	6542355	6544896	6542478	6544638	+	SETB	Cre02.g116900.t2.1		6542355,6543055,6543743,6543956,6544170,6544584	6542822,6543085,6543802,6544015,6544229,6544896	Protein contains an interrupted SET domain with very weak similarity to Arabidopsis thaliana ASHR2, SET39, SDG39 (At2g19640) and Zea mays SET123.
chr2	6544985	6549046	6545096	6548529	+	HDA1	Cre02.g116950.t1.2		6544985,6545533,6545756,6546079,6546297,6546859,6547233,6547530,6547783,6547945,6548329	6545233,6545619,6545842,6546194,6546439,6546932,6547364,6547584,6547814,6548036,6549046	ChromDB HDA3403; linked to Histone-lysine N-methyltransferase HLM6
chr2	6549185	6564236	6549319	6562621	+	CYG21	Cre02.g117000.t1.1		6549185,6549733,6550952,6551166,6551816,6552343,6555768,6560410,6560668,6561031,6561279,6561552,6561833,6562151,6562535	6549446,6550726,6551045,6551558,6552025,6555576,6560225,6560480,6560848,6561084,6561365,6561647,6561962,6562285,6564236	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr2	6565215	6575871	6565541	6574174	+	Cre02.g117050.t1.1	Cre02.g117050.t1.1		6565215,6565778,6567088,6567316,6568250,6568665,6569161,6569530,6570624,6570854,6571090,6571326,6572612,6572923,6573172,6573461,6573684,6573871	6565619,6566594,6567189,6568033,6568489,6568927,6569202,6569704,6570738,6570965,6571135,6572442,6572691,6573043,6573297,6573556,6573752,6575871	A protein kinase that has FhlA domain (GAF domain) which is a possible chromatin binding domain); null-allele mutant was isolated (PMID 29743196)
chr2	6565215	6575871	6565541	6574174	+	Cre02.g117050.t2.1	Cre02.g117050.t2.1		6565215,6565778,6567088,6567316,6568250,6568665,6569530,6570624,6570854,6571090,6571326,6572612,6572923,6573172,6573461,6573684,6573871	6565619,6566594,6567189,6568033,6568489,6568927,6569704,6570738,6570965,6571135,6572442,6572691,6573043,6573297,6573556,6573752,6575871	A protein kinase that has FhlA domain (GAF domain) which is a possible chromatin binding domain); null-allele mutant was isolated (PMID 29743196)
chr2	6565215	6575871	6565541	6574174	+	Cre02.g117050.t3.1	Cre02.g117050.t3.1		6565215,6565778,6567088,6567316,6568250,6568665,6569530,6570624,6570854,6571090,6571326,6572612,6572923,6573172,6573461,6573684,6573871	6565619,6566594,6567189,6568033,6568489,6568927,6569704,6570738,6570965,6571135,6572430,6572691,6573043,6573297,6573556,6573752,6575871	A protein kinase that has FhlA domain (GAF domain) which is a possible chromatin binding domain); null-allele mutant was isolated (PMID 29743196)
chr2	6575879	6580014	6576045	6579940	-	Cre02.g117100.t1.2	Cre02.g117100.t1.2		6577776,6577453,6577176,6576362,6575879	6580014,6577578,6577288,6576588,6576121	null-allele mutant was isolated (PMID 29743196)
chr2	6580125	6585984	6580168	6585242	+	Cre02.g117150.t1.2	Cre02.g117150.t1.2		6580125,6580586,6580971,6581340,6581611,6581985,6582351,6582541,6582769,6583246,6583695,6584006,6584366,6585225	6580340,6580649,6581080,6581410,6581712,6582091,6582440,6582616,6582870,6583368,6583733,6584093,6584839,6585984	
chr2	6587065	6590033	6588016	6588215	+	Cre02.g117175.t1.1	Cre02.g117175.t1.1		6587065,6587935	6587754,6590033	
chr2	6590487	6597204	6592044	6596719	-	Cre02.g117200.t1.2	Cre02.g117200.t1.2		6596434,6596087,6595583,6595332,6595091,6594755,6594573,6594271,6593723,6592966,6592767,6592419,6590487	6597204,6596149,6595771,6595408,6595154,6594841,6594605,6594437,6593925,6593306,6592808,6592598,6592167	GH42 family
chr2	6597560	6605294	6598680	6604519	-	Cre02.g117250.t1.1	Cre02.g117250.t1.1		6604404,6604080,6603799,6603401,6602950,6602100,6601544,6601300,6600889,6600609,6600401,6599966,6599475,6599061,6597560	6605294,6604104,6603912,6603488,6603077,6602199,6601661,6601381,6601026,6600649,6600496,6600117,6599606,6599219,6598776	
chr2	6597560	6605294	6598680	6604519	-	Cre02.g117250.t2.1	Cre02.g117250.t2.1		6604470,6604080,6603799,6603401,6602950,6602100,6601544,6601300,6600889,6600609,6600401,6599966,6599475,6599061,6597560	6605294,6604104,6603912,6603488,6603077,6602199,6601661,6601381,6601026,6600649,6600496,6600117,6599606,6599219,6598776	
chr2	6605346	6608354	6605707	6608175	-	MRPL45	Cre02.g117300.t1.2		6608124,6607956,6607630,6607241,6606840,6606386,6606077,6605346	6608354,6608038,6607774,6607401,6606972,6606532,6606164,6605835	
chr2	6608455	6613716	6608603	6612733	+	MOT11	Cre02.g117350.t1.1		6608455,6609014,6609332,6609796,6610019,6610486,6610854,6611227,6611647,6611877,6612255	6608825,6609118,6609556,6609888,6610081,6610542,6611024,6611300,6611728,6612001,6613716	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr2	6616565	6618326	6616669	6617643	+	Cre02.g117376.t1.1	Cre02.g117376.t1.1		6616565,6617319,6617643	6617061,6617359,6618326	
chr2	6638855	6643146	6638963	6643028	+	Cre02.g117400.t1.1	Cre02.g117400.t1.1		6638855,6640471,6642095	6640181,6641832,6643146	
chr2	6643205	6647697	6643266	6647160	+	Cre02.g117410.t1.2	Cre02.g117410.t1.2		6643205,6643770,6644282,6644719,6645033,6645470,6645990,6646448,6646816,6647084	6643440,6643921,6644372,6644762,6645141,6645580,6646063,6646473,6646900,6647697	
chr2	6647758	6649884	6648450	6649834	-	Cre02.g117450.t1.1	Cre02.g117450.t1.1		6649829,6647758	6649884,6649756	
chr2	6650049	6655564	6651229	6655537	-	HXK1	Cre02.g117500.t1.2		6655234,6654691,6654123,6653808,6653132,6652819,6652364,6651810,6650049	6655564,6654894,6654221,6653894,6653347,6652981,6652560,6652180,6651566	hexokinase; catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)
chr2	6655715	6658613	6655969	6658285	+	ANK13	Cre02.g117550.t1.2		6655715,6656529,6657033,6657387,6657870,6658180	6656062,6656645,6657155,6657554,6657962,6658613	protein of unknown function with ankyrin repeats; similar to putative ankyrin AT2G03430 [Arabidopsis thaliana]
chr2	6658629	6661884	6659095	6661391	-	Cre02.g117600.t1.1	Cre02.g117600.t1.1		6661355,6660835,6660257,6658629	6661884,6660977,6660368,6659989	
chr2	6661985	6666166	6662573	6665830	+	Cre02.g117650.t1.1	Cre02.g117650.t1.1		6661985,6662523,6663111,6663235,6663457,6663737,6664066,6664364,6664766,6665035,6665221,6665660	6662347,6662885,6663135,6663317,6663572,6663878,6664184,6664405,6664858,6665080,6665302,6666166	
chr2	6666169	6667774	6667114	6667439	-	Cre02.g117676.t1.1	Cre02.g117676.t1.1		6667436,6666169	6667774,6667279	
chr2	6667947	6669565	6668330	6668998	+	Cre02.g117700.t1.1	Cre02.g117700.t1.1		6667947,6668998	6668804,6669565	
chr2	6669895	6671286	6670294	6671038	+	Cre02.g117750.t1.2	Cre02.g117750.t1.2		6669895,6670807	6670387,6671286	
chr2	6673573	6676744	6674164	6676528	+	Cre02.g117781.t1.1	Cre02.g117781.t1.1		6673573,6674162,6674391,6674837,6675241,6675585,6675903,6676279	6674021,6674204,6674524,6674984,6675393,6675668,6676063,6676744	
chr2	6676813	6683824	6677091	6683063	+	Cre02.g117813.t1.2	Cre02.g117813.t1.2		6676813,6678288,6678889,6679180,6679900,6680165,6680609,6681058,6681331,6682002,6682443,6682916	6678022,6678522,6679049,6679692,6679964,6680447,6680832,6681131,6681619,6682145,6682604,6683824	
chr2	6684871	6694042	6685386	6693891	-	Cre02.g117850.t1.2	Cre02.g117850.t1.2		6693799,6692915,6692202,6691709,6691402,6691140,6690876,6690672,6690208,6689749,6689328,6689020,6688221,6687695,6687389,6686984,6686605,6686291,6685653,6684871	6694042,6693419,6692519,6691981,6691533,6691220,6690968,6690743,6690371,6689915,6689516,6689168,6688838,6688062,6687493,6687217,6686791,6686452,6686162,6685446	
chr2	6694347	6703559	6694808	6703282	-	HEL11	Cre02.g117900.t1.1		6702951,6702585,6702084,6701784,6701420,6701135,6700785,6700494,6700110,6699779,6699384,6699020,6698668,6698386,6698135,6697715,6697311,6696765,6696254,6695858,6695535,6695143,6694347	6703559,6702663,6702265,6701886,6701565,6701239,6700963,6700604,6700226,6699891,6699451,6699104,6698754,6698470,6698249,6697969,6697516,6696935,6696466,6696079,6695629,6695308,6694967	putative Mtr4p homolog, also called DOB1: Dead-box family ATP dependent helicase required for mRNA export from the nucleus; co-factor of the exosome complex, required for 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae.
chr2	6703657	6707567	6703828	6706757	+	Cre02.g117950.t1.1	Cre02.g117950.t1.1		6703657,6704322,6704847,6705335,6705855	6704083,6704542,6705008,6705726,6707567	
chr2	6707633	6712705	6707766	6712400	+	PHR2	Cre02.g118000.t1.2		6707633,6707975,6708220,6709327,6709632,6710091,6710482,6711047,6711371,6711586,6711876,6712222	6707850,6708055,6709200,6709480,6709892,6710306,6710915,6711201,6711472,6711704,6712023,6712705	CPD photolyase type II (Deoxyribodipyrimidine photolyase class 2)
chr2	6712827	6716282	6714157	6716183	-	CYCU1	Cre02.g118050.t1.2		6716171,6715655,6715224,6714890,6714578,6712827	6716282,6715951,6715388,6715006,6714724,6714436	U type cyclin
chr2	6719077	6722082	6720507	6721793	-	Cre02.g118100.t1.2	Cre02.g118100.t1.2		6721757,6721137,6719077	6722082,6721394,6720891	
chr2	6722137	6724622	6722739	6724581	-	Cre02.g118125.t1.1	Cre02.g118125.t1.1		6724058,6723818,6723303,6722137	6724622,6723927,6723443,6723084	
chr2	6722137	6724412	6722739	6724379	-	Cre02.g118125.t2.1	Cre02.g118125.t2.1		6723818,6723303,6722137	6724412,6723443,6723084	
chr2	6724487	6726702	6724805	6726611	-	Cre02.g118151.t1.1	Cre02.g118151.t1.1		6726153,6725848,6725674,6725303,6724487	6726702,6725918,6725753,6725480,6725143	
chr2	6726752	6728822	6726903	6728617	-	Cre02.g118200.t1.2	Cre02.g118200.t1.2		6728574,6728235,6727764,6726752	6728822,6728329,6728000,6727551	
chr2	6728965	6731820	6729186	6730921	+	SWB1	Cre02.g118250.t1.1		6728965,6729345,6729518,6729890,6730206,6730441,6730801	6729258,6729418,6729647,6730004,6730282,6730599,6731820	Contains two SWIB domains, conserved in yeast and mammals, present in ATP-dependent chromatin-remodelling proteins that facilitate transcription activation. Similar to Arabidopsis SWIB complex BAF60b domain-containing protein encoded by F13F21.4.
chr2	6731867	6736494	6731929	6735517	+	HEL12	Cre02.g118300.t1.2		6731867,6732763,6733180,6733858,6734254,6734713	6732523,6732944,6733390,6734031,6734502,6736494	RNA helicase
chr2	6736903	6742666	6737043	6741980	+	MFT14	Cre02.g118350.t1.1		6736903,6737477,6737891,6738024,6738320,6738805,6740270,6740723	6737079,6737703,6737933,6738107,6738640,6740115,6740530,6742666	Permease
chr2	6742697	6747622	6743129	6747506	-	Cre02.g118400.t1.1	Cre02.g118400.t1.1		6747359,6747092,6746818,6746457,6745971,6745632,6745336,6745032,6744662,6744048,6743788,6743482,6742697	6747622,6747181,6746874,6746531,6746323,6745701,6745387,6745156,6744779,6744435,6743902,6743558,6743337	
chr2	6747787	6753902	6747961	6753759	-	DNJ28	Cre02.g118450.t1.1		6753639,6753313,6753120,6752658,6752338,6751904,6751604,6751357,6751073,6750675,6750252,6749861,6749190,6748837,6747787	6753902,6753380,6753171,6752939,6752508,6752001,6751640,6751452,6751180,6750846,6750463,6750079,6749668,6749025,6748598	DnaJ-like protein; contains N-terminal J-domain (pfam226); weak homology to rice Q7XI55, which contains thioredoxin fold and is predicted to be ER-targeted
chr2	6754137	6760522	6754388	6760376	-	COPB2	Cre02.g118500.t1.1		6760373,6760255,6760054,6759729,6759395,6759171,6758933,6758737,6758458,6758291,6758026,6757847,6757634,6757369,6757109,6756719,6756313,6755612,6755396,6755184,6754784,6754137	6760522,6760275,6760115,6759783,6759561,6759252,6759046,6758818,6758549,6758350,6758141,6757886,6757708,6757519,6757248,6756933,6756570,6756127,6755495,6755268,6755031,6754655	Expressed Protein. Beta'-COP (Beta-prime). Subunit of COP-I complex involved in vesicle trafficking.
chr2	6760647	6762905	6762106	6762808	-	Cre02.g118550.t1.2	Cre02.g118550.t1.2		6762637,6760647	6762905,6762268	
chr2	6763464	6767532	6763987	6766694	-	FTSZ1	Cre02.g118600.t1.2		6767006,6766473,6766214,6765911,6765557,6765370,6765046,6764720,6764494,6763464	6767532,6766736,6766346,6766048,6765712,6765434,6765206,6764872,6764586,6764307	identical to GI:20372934; alternative splicing uses splice sites internal to exons 5 and 9
chr2	6767677	6773962	6768250	6773636	-	PHC47	Cre02.g118650.t1.1		6773574,6773283,6771873,6770298,6769807,6769113,6768835,6767677	6773962,6773491,6773148,6771656,6770050,6769636,6768892,6768673	
chr2	6774030	6794632	6774264	6794078	-	Cre02.g118700.t1.1	Cre02.g118700.t1.1		6794008,6792287,6790730,6789997,6789490,6789123,6787865,6787419,6785825,6785090,6784582,6784103,6783456,6782394,6782170,6781922,6781510,6780885,6778346,6778127,6777929,6777497,6777251,6777062,6776753,6776471,6774030	6794632,6793800,6792158,6790559,6789884,6789318,6788950,6787696,6787324,6785691,6784889,6784450,6783962,6783161,6782203,6781968,6781673,6781302,6780655,6778214,6777993,6777705,6777314,6777094,6776839,6776557,6776133	null-allele mutant was isolated (PMID 29743196)
chr2	6794756	6800252	6795139	6800013	-	Cre02.g118750.t1.1	Cre02.g118750.t1.1		6799968,6799846,6799350,6798995,6798538,6798164,6797700,6797332,6797053,6796774,6796463,6796213,6795961,6795725,6794756	6800252,6799872,6799415,6799096,6798681,6798343,6797843,6797437,6797155,6796906,6796540,6796275,6796067,6795827,6795556	
chr2	6800337	6805352	6800669	6805234	-	Cre02.g118801.t1.1	Cre02.g118801.t1.1		6804952,6804010,6803711,6803470,6803075,6802813,6802496,6802266,6802008,6801716,6801347,6801016,6800337	6805352,6804713,6803804,6803555,6803290,6802953,6802615,6802347,6802078,6801842,6801511,6801107,6800814	
chr2	6805406	6807142	6805674	6807072	-	Cre02.g118850.t1.2	Cre02.g118850.t1.2		6807060,6806785,6806192,6805917,6805406	6807142,6806889,6806270,6805953,6805714	
chr2	6807243	6811844	6807470	6810480	+	MYG1	Cre02.g118900.t1.2		6807243,6807923,6808314,6808580,6808893,6809497,6809937,6810282	6807627,6808059,6808367,6808649,6808996,6809649,6810047,6811844	Highly conserved expressed protein; homolog of mouse MYG1 (GAMM1), a highly conserved gene from autonomously proliferating mouse melanocytes. Contains a putative metal-dependent hydrolase domain. Similar to GAMM1 protein of Arabidopsis thaliana
chr2	6812683	6813535	6812742	6813061	+	PRPS17	Cre02.g118950.t1.2		6812683	6813535	imported to chloroplast; Chloroplast small ribosomal subunit protein S17
chr2	6813537	6816632	6813558	6816509	-	PEX19	Cre02.g119000.t1.1		6816478,6816275,6815842,6814835,6814389,6813537	6816632,6816365,6816170,6815643,6814553,6813723	Expressed protein similar to Pex19, a farnesylated protein involved in import of proteins into peroxisomes.
chr2	6816733	6820536	6817012	6819381	+	CER1	Cre02.g119050.t1.1		6816733,6817452,6817635,6817831,6818086,6819102	6817265,6817522,6817694,6817915,6818990,6820536	Contains esterase/lipase/thioesterase domain and predicted N-terminal signal peptide. Similar to an Arabidopsis At1g26120 hypothetical protein with a carboxylesterase domain; closely related to nearby CER2
chr2	6820583	6823915	6820682	6823333	+	CER2	Cre02.g119100.t1.2		6820583,6821174,6821405,6821753,6822039,6823105	6820887,6821244,6821464,6821849,6822994,6823915	Contains esterase/lipase/thioesterase domain and predicted N-terminal signal peptide. Similar to an Arabidopsis At1g26120 hypothetical protein with a carboxylesterase domain; closely related to nearby CER1
chr2	6824012	6828312	6824830	6828124	-	Cre02.g119150.t1.2	Cre02.g119150.t1.2		6828058,6827794,6827188,6826734,6826404,6824012	6828312,6827958,6827331,6826918,6826534,6826236	
chr2	6828577	6829352	6828977	6829321	-	Cre02.g119201.t1.1	Cre02.g119201.t1.1		6829266,6828577	6829352,6829096	
chr2	6831812	6834592	6832450	6834419	-	Cre02.g119250.t1.2	Cre02.g119250.t1.2		6834241,6833993,6833699,6833298,6832900,6831812	6834592,6834075,6833788,6833336,6832936,6832545	
chr2	6834647	6837172	6834997	6837092	-	Cre02.g119300.t1.2	Cre02.g119300.t1.2		6836792,6836385,6835878,6835547,6835223,6834647	6837172,6836468,6835970,6835616,6835293,6835018	
chr2	6837227	6840512	6837500	6840451	-	Cre02.g119350.t1.2	Cre02.g119350.t1.2		6840286,6839960,6839522,6839077,6838717,6838256,6838066,6837227	6840512,6840129,6839741,6839262,6838836,6838338,6838121,6837727	
chr2	6840613	6845104	6840701	6844906	+	Cre02.g119400.t1.1	Cre02.g119400.t1.1		6840613,6841133,6841541,6841995,6842310,6842719,6842967,6843171,6843358,6843658,6843940,6844245,6844466,6844726	6840873,6841313,6841674,6842086,6842453,6842769,6843016,6843210,6843432,6843765,6844023,6844331,6844534,6845104	
chr2	6845106	6852209	6846300	6851969	-	Cre02.g119450.t1.2	Cre02.g119450.t1.2		6851441,6850824,6850459,6850063,6849733,6849469,6849091,6848663,6848428,6848098,6847638,6847178,6846755,6845106	6852209,6850961,6850552,6850187,6849813,6849593,6849247,6848920,6848495,6848257,6847800,6847371,6846936,6846559	
chr2	6853323	6855558	6854400	6854986	+	Cre02.g119484.t1.2	Cre02.g119484.t1.2		6853323,6853498,6854005,6854336,6854740	6853380,6853537,6854080,6854457,6855558	
chr2	6857277	6861951	6858175	6861778	-	Cre02.g119500.t1.1	Cre02.g119500.t1.1		6861594,6861359,6860424,6860234,6860046,6859850,6859526,6859292,6858857,6858621,6857277	6861951,6861400,6860828,6860322,6860086,6859939,6859740,6859359,6859076,6858734,6858435	
chr2	6862052	6863813	6862377	6863340	+	Cre02.g119526.t1.1	Cre02.g119526.t1.1		6862052,6863169	6862395,6863813	
chr2	6863992	6865569	6864083	6865076	+	NIP1	Cre02.g119550.t1.2		6863992,6864626,6864977	6864197,6864676,6865569	Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] but TargetP predicts mitochondrial localization; Volvox homolog NipA is NaCl-inducible [PMID: 17184518]
chr2	6865702	6870593	6866006	6870148	+	PSD1	Cre02.g119600.t1.2		6865702,6866499,6866927,6867301,6867873,6868598,6869013,6869925	6866108,6866666,6867039,6867474,6868011,6868645,6869137,6870593	
chr2	6870596	6875961	6871060	6875939	-	GNT3	Cre02.g119650.t1.1		6875632,6875371,6875017,6874663,6874246,6873855,6873458,6873161,6872860,6872504,6872095,6871792,6871403,6870596	6875961,6875459,6875103,6874769,6874418,6874000,6873574,6873232,6872913,6872663,6872145,6871893,6871492,6871239	Acetylglucosaminyltransferase, probably a hydroxyproline N-acetylglucosaminyltransferase
chr2	6876016	6882481	6876522	6882349	-	Cre02.g119651.t1.2	Cre02.g119651.t1.2		6882085,6881644,6881324,6880932,6880355,6879358,6878941,6878528,6878071,6877743,6877361,6876016	6882481,6881748,6881463,6881082,6880767,6879853,6879012,6878643,6878138,6877862,6877467,6877131	
chr2	6882987	6889393	6883221	6888048	+	Cre02.g119700.t1.1	Cre02.g119700.t1.1		6882987,6883748,6884147,6884648,6884975,6885389,6885680,6886018,6886818,6887177,6887373	6883480,6883971,6884299,6884722,6885090,6885475,6885788,6886087,6886913,6887235,6889393	
chr2	6889442	6896664	6889597	6896129	+	Cre02.g119751.t1.1	Cre02.g119751.t1.1		6889442,6889986,6890233,6890590,6892034,6894844,6895170,6895470,6896120	6889634,6890015,6890289,6890712,6893322,6895065,6895251,6895687,6896664	
chr2	6898062	6909143	6898296	6908422	+	Cre02.g119800.t1.1	Cre02.g119800.t1.1		6898062,6898512,6898948,6899779,6900213,6901967,6905189,6905604,6906259,6907272,6907834	6898354,6898726,6899612,6900004,6901790,6905061,6905356,6906057,6907050,6907649,6909143	
chr2	6909192	6920383	6909655	6918188	+	PDE9	Cre02.g119850.t1.1		6909192,6910177,6910435,6911019,6911491,6911668,6912028,6912403,6912783,6913187,6915579,6915858,6916123,6916399,6916973,6917320,6917680,6918044	6909742,6910305,6910702,6911273,6911515,6911824,6912152,6912518,6912943,6915283,6915647,6915946,6916241,6916640,6917151,6917514,6917797,6920383	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain
chr2	6920406	6924041	6921132	6923889	-	CEP6	Cre02.g119900.t1.2		6923682,6923395,6922998,6922454,6922051,6921866,6921495,6920406	6924041,6923501,6923135,6922649,6922177,6921929,6921575,6921355	Putative papain-type cysteine protease of C1A subfamily
chr2	6924142	6930120	6924583	6929216	+	Cre02.g119950.t1.2	Cre02.g119950.t1.2		6924142,6925336,6926161,6926463,6926871,6927402,6927652,6927953,6928496,6929132	6924752,6925709,6926261,6926534,6926951,6927468,6927695,6928271,6928615,6930120	
chr2	6930172	6933923	6930622	6932645	+	Cre02.g120001.t1.1	Cre02.g120001.t1.1		6930172,6930982,6931661	6930773,6931337,6933923	
chr2	6933970	6936098	6934171	6935313	+	Cre02.g120050.t1.2	Cre02.g120050.t1.2		6933970,6934982	6934779,6936098	
chr2	6936683	6941921	6937079	6938208	-	RBCS1	Cre02.g120100.t1.2		6941655,6938044,6937826,6937512,6936683	6941921,6938247,6937905,6937597,6937307	RuBisCO small subunit 1, chloroplast precursor
chr2	6941968	6943439	6942146	6943417	-	RBCS2	Cre02.g120150.t1.2		6943253,6943028,6942613,6941968	6943439,6943107,6942698,6942374	RuBisCO small subunit 2, chloroplast precursor [PMID: 3820291]; almost identical to SwissProt P08475 and to nearby RBCS1; RBCS2 is the only isoform present in the crystallized complex [PMID: 11866526]
chr2	6943486	6946581	6944331	6946462	-	Cre02.g120200.t1.2	Cre02.g120200.t1.2		6946369,6945402,6943486	6946581,6946300,6944331	
chr2	6948769	6957171	6950128	6957068	-	STT7	Cre02.g120250.t1.1		6956829,6956632,6956322,6955790,6955286,6954747,6954364,6953918,6953581,6953039,6952437,6952146,6951593,6951068,6948769	6957171,6956726,6956395,6955897,6955406,6954856,6954505,6954096,6953751,6953208,6952629,6952202,6951721,6951241,6950431	Chloroplast protein kinase required for LHCII phosphorylation and state transition [PMID: 12624266]
chr2	6948769	6957171	6950128	6957068	-	STT7	Cre02.g120250.t2.1		6956829,6956632,6956322,6955790,6955286,6954747,6954364,6953918,6953581,6953039,6952437,6952146,6951593,6951068,6948769	6957171,6956726,6956395,6955897,6955406,6954856,6954505,6954096,6953751,6953208,6952629,6952202,6951721,6951208,6950431	Chloroplast protein kinase required for LHCII phosphorylation and state transition [PMID: 12624266]
chr2	6958686	6960951	6959704	6960843	-	SELH1	Cre02.g120301.t1.1		6960812,6960524,6960268,6958686	6960951,6960554,6960397,6959788	Contains selenocysteine at position 52 and SECIS in 3'-UTR; the gene model is wrong: first exon should be extended at least 6 nt at 5' to reach initiator AUG, and second exon should be shortened by 4 nt at 3'- to conform with EST data. The N-terminal sequence is thus MAPKRKAAAAAEAPAKKAKAPAKKKEAEKKEETAPVAADAGDGIVIEACKSUGAFKTR instead of MPGTASSSRLAKAEAHSKHGE
chr2	6961072	6967962	6961154	6967793	+	Cre02.g120350.t1.2	Cre02.g120350.t1.2		6961072,6962903,6963710,6964204,6964619,6964904,6965375,6966677,6967030,6967310,6967784	6962564,6963463,6963771,6964280,6964698,6964983,6966361,6966782,6967098,6967459,6967962	
chr2	6967976	6969091	6968394	6969013	-	Cre02.g127237.t1.1	Cre02.g127237.t1.1		6967976	6969091	
chr2	6969276	6971731	6970524	6971470	-	Cre02.g134124.t1.1	Cre02.g134124.t1.1		6969276	6971731	
chr2	7975477	7980308	7975611	7979462	+	Cre02.g140900.t1.1	Cre02.g140900.t1.1		7975477,7976080,7976585,7976853,7977396,7977578,7978181,7978739,7979098	7975876,7976243,7976663,7977229,7977446,7977700,7978471,7978938,7980308	
chr2	7985051	7988707	7988044	7988351	-	Cre02.g140921.t1.1	Cre02.g140921.t1.1		7985051	7988707	
chr2	8000025	8012695	8000025	8001240	-	Cre02.g140941.t1.1	Cre02.g140941.t1.1		8012630,8001578,8001207,8000810,8000439,8000025	8012695,8001634,8001270,8001017,8000502,8000232	
chr2	8020520	8025025	8023238	8024619	-	Cre02.g140961.t1.1	Cre02.g140961.t1.1		8024849,8024133,8023489,8020520	8025025,8024726,8023708,8023291	
chr2	8025118	8033397	8026435	8030648	+	Cre02.g140981.t1.1	Cre02.g140981.t1.1		8025118,8026429,8026777,8027383,8027674,8028836,8029059,8029884,8030231,8030587	8025454,8026492,8027250,8027499,8028135,8028940,8029196,8030003,8030238,8033397	
chr2	7939507	7953658	7939585	7952730	+	DCL1	Cre02.g141000.t1.1		7939507,7939870,7940217,7940589,7941040,7941349,7941682,7941981,7942402,7943690,7944238,7944508,7944851,7945270,7945789,7946246,7946542,7946917,7947222,7947796,7948930,7949448,7949945,7950293,7951228,7952328	7939679,7939982,7940384,7940655,7941175,7941589,7941796,7942186,7942709,7943994,7944392,7944723,7944982,7945505,7945955,7946318,7946695,7947031,7947611,7948681,7949247,7949702,7950131,7950972,7951819,7953658	Presumably involved in posttranscriptional gene silencing/RNA interference
chr2	7953797	7955254	7953825	7954268	+	Cre02.g141004.t1.1	Cre02.g141004.t1.1		7953797,7954171	7953905,7955254	
chr2	7972887	7974108	7973079	7973272	+	Cre02.g141005.t1.1	Cre02.g141005.t1.1		7972887	7974108	
chr2	8033306	8036667	8033445	8033694	+	Cre02.g141006.t1.1	Cre02.g141006.t1.1		8033306,8033689	8033626,8036667	
chr2	6982193	6986491	6982400	6986413	-	Cre02.g141011.t1.1	Cre02.g141011.t1.1		6984460,6984092,6983852,6983658,6983337,6983083,6982193	6986491,6984369,6984029,6983777,6983576,6983205,6982991	
chr2	8036716	8040547	8037001	8037628	+	Cre02.g141026.t1.1	Cre02.g141026.t1.1		8036716,8037135,8037581	8037068,8037194,8040547	
chr2	8040546	8043137	8041059	8041960	+	Cre02.g141046.t1.1	Cre02.g141046.t1.1		8040546,8041018,8041272,8041918	8040566,8041138,8041453,8043137	
chr2	7931561	7939406	7932110	7939286	-	AGO1	Cre02.g141050.t1.1		7939016,7938352,7937888,7937572,7937314,7937044,7936541,7936107,7935522,7935099,7934890,7934560,7934077,7933896,7933733,7933314,7932947,7932607,7931561	7939406,7938813,7938202,7937685,7937412,7937148,7936638,7936305,7935681,7935335,7934972,7934670,7934211,7933942,7933769,7933523,7933170,7932699,7932270	Presumably involved in posttranscriptional gene silencing/RNA interference. ChromDB AGO3401; more similar to other Chlamydomonas AGO than to any plant genes.
chr2	8046330	8067815	8047146	8061757	-	Cre02.g141066.t1.1	Cre02.g141066.t1.1		8067808,8061731,8058762,8058118,8057571,8056970,8055714,8055177,8054546,8054005,8053406,8052795,8052180,8051431,8050986,8050347,8049742,8049201,8048061,8047688,8046330	8067815,8061944,8058818,8058174,8057627,8057026,8055770,8055233,8054602,8054061,8053462,8053002,8052387,8051480,8051193,8050528,8049949,8049382,8048268,8047751,8047372	
chr2	8046330	8058239	8047146	8058054	-	Cre02.g141066.t2.1	Cre02.g141066.t2.1		8058016,8057571,8056970,8055714,8055177,8054546,8054005,8053406,8052795,8052180,8051431,8050986,8050347,8049742,8049201,8048061,8047688,8046330	8058239,8057627,8057026,8055770,8055233,8054602,8054061,8053462,8053002,8052387,8051480,8051193,8050528,8049949,8049382,8048268,8047751,8047372	
chr2	8046330	8067815	8047346	8061757	-	Cre02.g141066.t3.1	Cre02.g141066.t3.1		8067808,8061731,8058762,8058118,8057571,8056970,8055714,8055177,8054546,8054005,8053406,8052795,8052180,8051431,8050986,8049742,8049201,8048061,8047688,8046330	8067815,8061944,8058818,8058174,8057627,8057026,8055770,8055233,8054602,8054061,8053462,8053002,8052387,8051480,8051193,8049766,8049257,8048268,8047751,8047372	
chr2	8046330	8067815	8047346	8061757	-	Cre02.g141066.t4.1	Cre02.g141066.t4.1		8067808,8061731,8058762,8058118,8057571,8056970,8055714,8055177,8054546,8054005,8053406,8052795,8052180,8051431,8050986,8050347,8049742,8047688,8046330	8067815,8061944,8058818,8058174,8057627,8057026,8055770,8055233,8054602,8054061,8053462,8053002,8052387,8051480,8051193,8050528,8049798,8047751,8047372	
chr2	8058344	8166995	8058786	8166730	-	Cre02.g141086.t1.1	Cre02.g141086.t1.1		8166852,8166720,8166524,8166153,8165756,8165231,8164459,8163926,8163391,8162874,8162337,8161788,8161263,8150923,8067458,8066575,8065962,8063673,8062790,8061731,8058344	8166995,8166740,8166670,8166216,8165963,8165438,8164640,8164133,8163572,8163020,8162544,8161969,8161470,8151652,8068085,8067211,8066502,8064309,8063419,8062453,8058786	
chr2	8058344	8167095	8058786	8166186	-	Cre02.g141086.t2.1	Cre02.g141086.t2.1		8166852,8166524,8166153,8165756,8165231,8164565,8164459,8163926,8163391,8162874,8162337,8161788,8161263,8150923,8067458,8066575,8065962,8063673,8062790,8061731,8058344	8167095,8166740,8166216,8165963,8165412,8164666,8164515,8164133,8163572,8163020,8162544,8161969,8161470,8151652,8068085,8067211,8066502,8064309,8063419,8062453,8058786	
chr2	7927932	7931558	7928050	7930915	+	CPL23	Cre02.g141100.t1.2		7927932,7928260,7928670,7928920,7929188,7929493,7929768,7930327,7930762	7928146,7928538,7928780,7929031,7929267,7929580,7929954,7930435,7931558	chloroplast lumenal protein
chr2	8167070	8169125	8167781	8168611	-	Cre02.g141106.t1.1	Cre02.g141106.t1.1		8168165,8167070	8169125,8167983	
chr2	8167194	8169125	8167781	8168611	-	Cre02.g141106.t2.1	Cre02.g141106.t2.1		8168165,8167194	8169125,8167983	
chr2	8169330	8172875	8172325	8172816	-	Cre02.g141126.t1.1	Cre02.g141126.t1.1		8172762,8169330	8172875,8172442	
chr2	8180526	8183821	8183099	8183541	-	Cre02.g141146.t1.1	Cre02.g141146.t1.1		8183538,8180526	8183821,8183342	
chr2	7917991	7927796	7918556	7927576	-	Cre02.g141150.t1.1	Cre02.g141150.t1.1		7927512,7927199,7926906,7926083,7925796,7925501,7924057,7921915,7921156,7920581,7917991	7927796,7927302,7926999,7926672,7925960,7925589,7925378,7923863,7921707,7920991,7920362	
chr2	8196226	8200511	8197302	8199893	-	Cre02.g141166.t1.1	Cre02.g141166.t1.1		8199406,8197447,8196226	8200511,8198598,8197307	
chr2	8200566	8207591	8200799	8206836	-	Cre02.g141186.t1.1	Cre02.g141186.t1.1		8206822,8206134,8205795,8204740,8204337,8202321,8201349,8200566	8207591,8206638,8206010,8204936,8204562,8202719,8201492,8201210	null-allele passenger mutation was isolated (PMID 29743196)
chr2	7914696	7917978	7914734	7917099	+	NIC2	Cre02.g141200.t1.2		7914696,7914825,7914976,7915244,7915443,7915774,7916206,7916558,7916934	7914745,7914876,7915037,7915355,7915559,7915867,7916356,7916756,7917978	Putative locus for NIC2 genetic marker
chr2	8210636	8216621	8211309	8215854	-	Cre02.g141206.t1.1	Cre02.g141206.t1.1		8215706,8215066,8214793,8214169,8213940,8213253,8213024,8212713,8212495,8212334,8211988,8211749,8211489,8210636	8216621,8215620,8214938,8214387,8214023,8213471,8213107,8212934,8212585,8212343,8212104,8211865,8211626,8211373	
chr2	8225314	8227871	8225626	8226405	-	Cre02.g141226.t1.1	Cre02.g141226.t1.1		8227134,8226336,8225314	8227871,8226430,8225770	
chr2	8231476	8232231	8231708	8232077	-	Cre02.g141246.t1.1	Cre02.g141246.t1.1		8231854,8231476	8232231,8231743	
chr2	7909707	7912888	7910158	7912167	+	Cre02.g141250.t1.2	Cre02.g141250.t1.2		7909707,7910112,7910325,7910762,7911208,7911386,7911615,7911795	7909992,7910256,7910656,7911115,7911290,7911502,7911677,7912888	
chr2	8232376	8233811	8232693	8233069	-	Cre02.g141266.t1.1	Cre02.g141266.t1.1		8232995,8232815,8232376	8233811,8232918,8232728	
chr2	8238846	8244421	8240468	8243978	-	Cre02.g141286.t1.1	Cre02.g141286.t1.1		8243956,8241850,8240800,8238846	8244421,8243383,8241570,8240616	
chr2	8238846	8242311	8240468	8242251	-	Cre02.g141286.t2.1	Cre02.g141286.t2.1		8241850,8240800,8238846	8242311,8241570,8240616	
chr2	8238846	8241681	8240468	8241654	-	Cre02.g141286.t3.1	Cre02.g141286.t3.1		8240800,8238846	8241681,8240616	
chr2	8267532	8271313	8267802	8270318	+	Cre02.g141306.t1.1	Cre02.g141306.t1.1		8267532,8268007,8268811,8269166,8269436,8270318	8267843,8268049,8268862,8269270,8270178,8271313	
chr2	8273842	8275133	8274277	8274908	+	Cre02.g141326.t1.1	Cre02.g141326.t1.1		8273842,8274264,8274621,8274858	8274113,8274383,8274725,8275133	
chr2	8275432	8277253	8276039	8276380	+	Cre02.g141346.t1.1	Cre02.g141346.t1.1		8275432,8276146,8276298	8276093,8276243,8277253	
chr2	7902751	7906536	7903714	7906462	-	DRC10	Cre02.g141350.t1.2		7906400,7906241,7906054,7905747,7905584,7905363,7905012,7904697,7904387,7904047,7902751	7906536,7906307,7906164,7905830,7905658,7905464,7905131,7904816,7904491,7904133,7903852	Flagellar Associated Protein, found in the flagellar proteome
chr2	7907262	7908736	7907648	7908701	-	Cre02.g141351.t1.1	Cre02.g141351.t1.1		7908334,7907262	7908736,7907701	
chr2	8280176	8283341	8281254	8282550	-	Cre02.g141366.t1.1	Cre02.g141366.t1.1		8281423,8280176	8283341,8281282	
chr2	8284482	8289343	8284798	8288925	+	Cre02.g141386.t1.1	Cre02.g141386.t1.1		8284482,8285036,8285184,8285519,8285988,8286214,8287637,8287836,8288619	8284859,8285110,8285297,8285842,8286098,8287493,8287792,8288477,8289343	
chr2	7897189	7902738	7897261	7901603	+	PCK1	Cre02.g141400.t1.2		7897189,7897812,7898100,7898303,7898480,7898850,7899110,7899447,7899831,7900548,7900898,7901485	7897372,7897955,7898160,7898333,7898651,7898958,7899260,7899574,7900215,7900724,7901143,7902738	phosphoenolpyruvate carboxykinase; PEP carboxykinase (EC 4.1.1.49); based on high similarity to PEPCK from Panicum maximum (GenBank AAQ10076) and many other plants; Target-P predicts no organelle targeting, so probably cytosolic form; may represent a minor splice variant of PCK1a
chr2	8289432	8298763	8290832	8298251	+	Cre02.g141406.t1.1	Cre02.g141406.t1.1		8289432,8290827,8291228,8291395,8291588,8292024,8292248,8293711,8294103,8294876,8295243,8296105,8296976,8297945	8290211,8291130,8291311,8291499,8291914,8292134,8293530,8293970,8294769,8295055,8295934,8296831,8297815,8298763	
chr2	8344782	8349798	8345320	8346841	+	Cre02.g141426.t1.1	Cre02.g141426.t1.1		8344782,8346599	8345378,8349798	
chr2	8355712	8358793	8356367	8358650	+	Cre02.g141446.t1.1	Cre02.g141446.t1.1		8355712,8356682,8357080,8358350	8356575,8356777,8358269,8358793	
chr2	7893547	7896958	7893744	7895479	+	UBC14	Cre02.g141450.t1.2		7893547,7893990,7894329,7894730,7895341	7893809,7894062,7894468,7894805,7896958	
chr2	8358806	8364041	8358904	8363706	-	Cre02.g141466.t1.1	Cre02.g141466.t1.1		8363912,8363531,8362984,8362754,8361936,8361210,8360895,8360594,8360362,8360129,8359096,8358806	8364041,8363711,8363431,8362831,8362296,8361817,8361098,8360731,8360474,8360214,8359999,8358904	
chr2	8364880	8367245	8365895	8366564	-	Cre02.g141486.t1.1	Cre02.g141486.t1.1		8366342,8364880	8367245,8365907	
chr2	7891577	7893426	7892046	7893351	-	Cre02.g141500.t1.2	Cre02.g141500.t1.2		7893197,7892341,7891577	7893426,7892423,7892094	
chr2	8378056	8385587	8378228	8384216	+	Cre02.g141506.t1.1	Cre02.g141506.t1.1		8378056,8379424,8379882,8380518,8381505,8381870,8382343,8383026,8383436,8384054	8378249,8379545,8380043,8380620,8381603,8381958,8382514,8383076,8383531,8385587	
chr2	8385630	8386725	8385887	8386535	-	Cre02.g141526.t1.1	Cre02.g141526.t1.1		8386192,8385630	8386725,8385919	
chr2	8386890	8389955	8387547	8389719	-	Cre02.g141546.t1.1	Cre02.g141546.t1.1		8389712,8389061,8388194,8386890	8389955,8389081,8388241,8387873	
chr2	7887375	7891471	7887671	7890755	+	Cre02.g141550.t1.2	Cre02.g141550.t1.2		7887375,7887812,7888305,7889155,7889580,7890060,7890417,7890632	7887689,7887852,7888458,7889280,7889672,7890152,7890461,7891471	
chr2	8390646	8392210	8390832	8391939	+	Cre02.g141566.t1.1	Cre02.g141566.t1.1		8390646,8391661	8391289,8392210	
chr2	8392271	8394485	8393109	8394368	-	Cre02.g141586.t1.1	Cre02.g141586.t1.1		8394161,8393719,8392271	8394485,8393994,8393361	
chr2	7879817	7886278	7880024	7885760	+	EBM3	Cre02.g141600.t1.2		7879817,7880360,7880704,7881073,7881693,7882024,7882707,7883066,7883483,7883717,7883984,7884393,7885552	7880169,7880451,7880808,7881379,7881812,7882174,7882759,7883248,7883580,7883785,7884054,7885253,7886278	
chr2	8394740	8426755	8395509	8426644	-	DHC9	Cre02.g141606.t1.1		8426521,8426355,8425453,8424580,8423559,8422838,8422152,8421611,8421240,8420636,8419904,8419358,8418895,8418397,8417803,8417358,8416765,8416381,8415839,8415309,8414887,8414388,8413884,8413158,8412585,8412221,8411804,8410716,8409692,8409403,8409149,8408674,8408288,8407123,8406679,8406253,8405867,8405363,8404636,8404009,8403686,8402836,8402011,8401494,8400769,8400018,8399400,8398258,8397853,8397218,8396724,8394740	8426755,8426438,8425915,8424743,8424249,8423058,8422374,8421744,8421391,8420705,8420071,8419519,8418983,8418508,8418073,8417509,8416911,8416477,8415915,8415474,8415038,8414507,8414049,8413269,8412741,8412325,8411950,8411552,8410457,8409512,8409250,8408894,8408480,8407704,8406912,8406359,8405996,8405503,8405014,8404211,8403805,8403237,8402307,8401727,8400879,8400423,8399655,8398855,8398017,8397348,8396817,8396424	Flagellar inner arm dynein heavy chain, dynein c (monomeric).  Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]
chr2	8426820	8436495	8427787	8436359	-	Cre02.g141626.t1.1	Cre02.g141626.t1.1		8435717,8435171,8434439,8433581,8433055,8432037,8431466,8430729,8430311,8428601,8426820	8436495,8435515,8434517,8433753,8433366,8432735,8431768,8431251,8430573,8429827,8427787	
chr2	8436596	8440324	8437284	8439300	+	Cre02.g141646.t1.1	Cre02.g141646.t1.1		8436596,8436987,8437815,8438249,8439201	8436885,8437292,8437923,8438743,8440324	
chr2	8440735	8447195	8442045	8447133	-	Cre02.g141666.t1.1	Cre02.g141666.t1.1		8447124,8446830,8446617,8446428,8446183,8445694,8445161,8443854,8443532,8443016,8440735	8447195,8446870,8446765,8446481,8446212,8445858,8445382,8444719,8443630,8443111,8442813	
chr2	8440735	8447195	8442045	8447133	-	Cre02.g141666.t2.1	Cre02.g141666.t2.1		8447124,8446830,8446617,8446428,8445694,8445161,8443854,8443532,8443016,8440735	8447195,8446870,8446765,8446481,8445858,8445382,8444719,8443630,8443111,8442813	
chr2	8449543	8451695	8450330	8450898	-	Cre02.g141686.t1.1	Cre02.g141686.t1.1		8450895,8450641,8449543	8451695,8450728,8450491	
chr2	7863257	7873540	7863438	7873161	+	FAP315	Cre02.g141700.t1.1		7863257,7864729,7865134,7865739,7866051,7870356,7870751,7871215,7871559,7871837,7872498,7873059	7864506,7864853,7865429,7865810,7866219,7870458,7870882,7871311,7871679,7872236,7872728,7873540	
chr2	7874121	7879286	7875870	7878743	-	Cre02.g141701.t1.1	Cre02.g141701.t1.1		7878717,7878430,7878071,7877642,7874121	7879286,7878546,7878186,7877757,7877487	
chr2	8452370	8459225	8453466	8459200	-	Cre02.g141706.t1.1	Cre02.g141706.t1.1		8458300,8457615,8456216,8455220,8454599,8454004,8453875,8452370	8459225,8457710,8456272,8455261,8454688,8454117,8453907,8453538	
chr2	8452370	8459228	8453466	8459200	-	Cre02.g141706.t2.1	Cre02.g141706.t2.1		8458300,8457615,8456216,8455220,8454599,8454004,8452370	8459228,8457710,8456272,8455261,8454688,8454117,8453538	
chr2	8459376	8464294	8460025	8464078	+	Cre02.g141726.t1.1	Cre02.g141726.t1.1		8459376,8460322,8461257,8461926,8463042,8463487,8463994	8460184,8460537,8461430,8462096,8463164,8463711,8464294	
chr2	8465316	8468947	8465848	8468152	+	Cre02.g141746.t1.1	Cre02.g141746.t1.1		8465316,8465839,8466360,8466867,8467204,8467710	8465676,8465899,8466473,8466956,8467307,8468947	
chr2	8469956	8472041	8470696	8471799	+	Cre02.g141766.t1.1	Cre02.g141766.t1.1		8469956,8470808,8471003,8471256,8471512	8470738,8470939,8471170,8471358,8472041	
chr2	8472166	8482797	8472512	8481600	+	PDE25	Cre02.g141786.t1.1		8472166,8472703,8473797,8474691,8475184,8475451,8475866,8478054,8478429,8479017,8479251,8480133,8480575,8481024,8481429	8472530,8472978,8473918,8474797,8475257,8475540,8477737,8478211,8478591,8479101,8479366,8480389,8480746,8481197,8482797	Calmodulin dependent PDE1B1 protein from Homo Sapiens is closest relative
chr2	7853830	7862342	7855858	7861375	-	Cre02.g141800.t1.2	Cre02.g141800.t1.2		7861594,7858435,7858076,7857635,7853830	7862342,7861476,7858228,7857863,7856409	
chr2	8482883	8491575	8484377	8490831	-	PTK16	Cre02.g141806.t1.1		8490807,8490465,8490195,8488990,8488419,8487861,8487336,8486997,8486696,8486140,8485909,8485401,8484943,8482883	8491575,8490671,8490270,8489102,8488647,8487977,8487497,8487007,8486752,8486206,8485967,8485470,8485112,8484560	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr2	8492172	8508355	8492597	8508040	-	Cre02.g141826.t1.1	Cre02.g141826.t1.1		8507935,8507411,8506942,8506620,8506220,8505807,8505258,8504832,8504136,8503788,8503067,8502334,8501385,8500854,8500250,8496668,8496185,8495761,8494314,8494051,8493833,8493469,8493040,8492172	8508355,8507776,8507209,8506680,8506285,8505903,8505521,8504939,8504497,8503900,8503452,8502598,8501950,8501147,8500677,8496773,8496439,8495852,8495424,8494092,8493903,8493513,8493220,8492657	
chr2	8512776	8519807	8513530	8519670	+	DMC1	Cre02.g141846.t1.1		8512776,8513404,8513855,8514327,8514874,8515211,8515583,8516236,8516613,8516993,8517415,8517773,8518421,8519012,8519562	8513153,8513574,8513919,8514394,8514927,8515297,8515662,8516314,8516693,8517047,8517470,8517877,8518462,8519119,8519807	participates in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks. Belongs to RAD51_DMC1-radA family of recombinases
chr2	7849513	7853814	7849640	7852915	+	Cre02.g141850.t1.1	Cre02.g141850.t1.1		7849513,7850025,7850410,7850732,7851324,7851728,7851997,7852378,7852888	7849811,7850195,7850451,7850839,7851414,7851799,7852055,7852443,7853814	
chr2	8519820	8522485	8520802	8521801	-	Cre02.g141866.t1.1	Cre02.g141866.t1.1		8521677,8519820	8522485,8520852	
chr2	8519820	8522335	8520802	8521801	-	Cre02.g141866.t2.1	Cre02.g141866.t2.1		8521677,8519820	8522335,8520852	
chr2	8522596	8535837	8522766	8534642	+	Cre02.g141886.t1.1	Cre02.g141886.t1.1		8522596,8523493,8524189,8525144,8525501,8525977,8526323,8526873,8527144,8527620,8527975,8528565,8529086,8529457,8529717,8529854,8530894,8531249,8533407,8533623,8533870,8534161,8534579	8523120,8523987,8524271,8525315,8525770,8526054,8526684,8526997,8527406,8527803,8528295,8528899,8529289,8529568,8529748,8530714,8530974,8533231,8533448,8533693,8533914,8534344,8535837	
chr2	7846086	7849412	7846608	7849238	-	Cre02.g141900.t1.2	Cre02.g141900.t1.2		7849205,7848934,7848484,7847798,7847376,7847018,7846086	7849412,7849014,7848584,7847920,7847511,7847059,7846698	
chr2	8536630	8539885	8539602	8539798	-	Cre02.g141906.t1.1	Cre02.g141906.t1.1		8536630	8539885	
chr2	8539968	8546405	8541633	8545570	-	Cre02.g141926.t1.1	Cre02.g141926.t1.1		8546078,8545549,8545278,8545096,8544892,8544431,8544196,8543817,8543126,8542838,8542181,8541892,8539968	8546405,8545909,8545492,8545124,8544965,8544591,8544248,8543998,8543377,8542903,8542292,8542125,8541644	
chr2	8539968	8546405	8541633	8545570	-	Cre02.g141926.t2.1	Cre02.g141926.t2.1		8546078,8545549,8545278,8545096,8544892,8544431,8544196,8543835,8543126,8542838,8542181,8541892,8539968	8546405,8545909,8545492,8545124,8544965,8544591,8544248,8543998,8543377,8542903,8542292,8542125,8541644	
chr2	8546516	8560797	8547309	8559880	+	Cre02.g141946.t1.1	Cre02.g141946.t1.1		8546516,8547486,8548591,8548927,8552743,8553923,8554083,8554330,8555867,8556073,8556328	8547346,8547652,8548615,8549028,8553815,8553971,8554150,8554458,8555936,8556200,8560797	
chr2	8548046	8560797	8548394	8559880	+	Cre02.g141946.t3.1	Cre02.g141946.t3.1		8548046,8548591,8548927,8552743,8553923,8554083,8554330,8555867,8556073,8556328	8548418,8548615,8549028,8553815,8553971,8554150,8554458,8555936,8556200,8560797	
chr2	8546516	8547996	8547309	8547698	+	Cre02.g141946.t2.1	Cre02.g141946.t2.1		8546516,8547486	8547346,8547996	
chr2	7841673	7846084	7841817	7845217	+	MOT19	Cre02.g141950.t1.1		7841673,7842407,7843016,7843382,7843739,7844152,7844523,7844752	7842054,7842520,7843043,7843472,7843780,7844306,7844581,7846084	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr2	8562919	8574672	8563233	8572775	+	Cre02.g141966.t1.1	Cre02.g141966.t1.1		8562919,8563501,8563746,8563984,8564256,8564888,8565663,8566076,8567244,8567730,8568077,8568420,8568596,8568799,8569104,8569383,8569608,8570114,8570383,8570578,8570877,8571072,8571316,8571573,8571928,8572333	8563419,8563610,8563848,8564085,8564639,8565444,8565924,8567017,8567520,8567939,8568213,8568484,8568659,8568852,8569238,8569445,8569628,8570289,8570399,8570651,8570925,8571136,8571469,8571614,8572069,8574672	null-allele mutant was isolated (PMID 29743196)
chr2	8562919	8574672	8563233	8572775	+	Cre02.g141966.t2.1	Cre02.g141966.t2.1		8562919,8563501,8563746,8563984,8564256,8564888,8565663,8566076,8567244,8567733,8568077,8568420,8568596,8568799,8569104,8569383,8569608,8570114,8570383,8570578,8570877,8571072,8571316,8571573,8571928,8572333	8563419,8563610,8563848,8564085,8564639,8565444,8565924,8567017,8567520,8567939,8568213,8568484,8568659,8568852,8569238,8569445,8569628,8570289,8570399,8570651,8570925,8571136,8571469,8571614,8572069,8574672	null-allele mutant was isolated (PMID 29743196)
chr2	8562919	8574672	8563233	8572775	+	Cre02.g141966.t3.1	Cre02.g141966.t3.1		8562919,8563501,8563746,8563984,8564256,8564888,8565663,8566076,8567244,8567733,8568080,8568420,8568596,8568799,8569104,8569383,8569608,8570114,8570383,8570578,8570877,8571072,8571316,8571573,8571928,8572333	8563419,8563610,8563848,8564085,8564639,8565444,8565924,8567017,8567520,8567939,8568213,8568484,8568659,8568852,8569238,8569445,8569628,8570289,8570399,8570651,8570925,8571136,8571469,8571614,8572069,8574672	null-allele mutant was isolated (PMID 29743196)
chr2	8562919	8574672	8563233	8572775	+	Cre02.g141966.t4.1	Cre02.g141966.t4.1		8562919,8563501,8563746,8563984,8564256,8564888,8565663,8566076,8567244,8567733,8568077,8568420,8568596,8568799,8569104,8569383,8569608,8570114,8570578,8570877,8571072,8571316,8571573,8571928,8572333	8563419,8563610,8563848,8564085,8564639,8565444,8565924,8567017,8567520,8567939,8568213,8568484,8568659,8568852,8569238,8569445,8569628,8570291,8570651,8570925,8571136,8571469,8571614,8572069,8574672	null-allele mutant was isolated (PMID 29743196)
chr2	8578789	8586509	8579463	8584800	+	Cre02.g141986.t1.1	Cre02.g141986.t1.1		8578789,8579450,8581261,8582869,8583370,8584309,8584780	8579338,8580877,8582531,8583025,8583996,8584458,8586509	
chr2	7838937	7841556	7839597	7841373	-	UBC4	Cre02.g142000.t1.2		7841272,7840732,7840229,7839939,7838937	7841556,7840852,7840303,7839992,7839726	SUMO conjugating enzyme, E2.  Discussed by Wang et al. 2008 as CrUbcE2_1
chr2	8592033	8595708	8592373	8594284	-	Cre02.g142006.t1.1	Cre02.g142006.t1.1		8595168,8594269,8593655,8592884,8592033	8595708,8594350,8593837,8592957,8592818	
chr2	8595852	8596438	8596119	8596306	-	Cre02.g142026.t1.1	Cre02.g142026.t1.1		8595852	8596438	
chr2	8617651	8621078	8618454	8620974	-	Cre02.g142046.t1.1	Cre02.g142046.t1.1		8620953,8620139,8618864,8617651	8621078,8620480,8619371,8618454	
chr2	7836027	7838642	7836410	7838507	-	Cre02.g142050.t1.2	Cre02.g142050.t1.2		7836830,7836027	7838642,7836662	
chr2	8656453	8661588	8657199	8661290	-	Cre02.g142066.t1.1	Cre02.g142066.t1.1		8661237,8660891,8660581,8660396,8660175,8659927,8659686,8659534,8659237,8658908,8658562,8658268,8658027,8657786,8656453	8661588,8660990,8660718,8660451,8660313,8659993,8659809,8659585,8659323,8658991,8658678,8658443,8658153,8657893,8657649	
chr2	8661714	8664643	8661843	8664009	+	Cre02.g142086.t1.1	Cre02.g142086.t1.1		8661714,8662074,8662279,8662466,8662660,8662963,8663210,8663385,8663617,8663916	8661954,8662124,8662347,8662528,8662751,8663074,8663311,8663503,8663767,8664643	
chr2	7831713	7835204	7831744	7834517	+	Cre02.g142100.t1.1	Cre02.g142100.t1.1		7831713,7832104,7832287,7832728,7833048,7833362	7831937,7832133,7832374,7832865,7833126,7835204	
chr2	8664653	8666438	8664815	8666039	-	Cre02.g142106.t1.1	Cre02.g142106.t1.1		8666029,8664653	8666438,8664997	
chr2	8666506	8669608	8667631	8669500	-	FAP115	Cre02.g142126.t1.1		8669351,8669039,8668802,8668516,8668240,8668033,8667830,8666506	8669608,8669180,8668906,8668584,8668317,8668074,8667921,8667647	null-allele mutant was isolated (PMID 29743196)
chr2	8670279	8673840	8670397	8673173	+	CGL102	Cre02.g142146.t1.1		8670279,8670574,8670963,8671284,8671457,8671784,8672290,8672528,8672768,8673098	8670479,8670800,8671103,8671343,8671549,8671908,8672395,8672614,8672890,8673840	
chr2	7829903	7831651	7830022	7831259	+	Cre02.g142150.t1.2	Cre02.g142150.t1.2		7829903,7830144,7830325,7830652,7831085	7830060,7830231,7830430,7830800,7831651	
chr2	8673843	8690038	8674164	8689807	-	Cre02.g142166.t1.1	Cre02.g142166.t1.1		8689751,8689603,8688976,8688663,8688264,8687950,8687723,8687392,8687104,8686913,8686742,8686448,8686262,8686018,8685730,8685331,8685057,8684832,8684591,8684245,8683876,8683572,8683342,8683061,8682795,8682449,8682223,8681514,8681175,8680908,8680659,8680412,8679862,8679613,8679262,8679108,8678839,8678456,8678153,8677773,8677553,8677231,8676834,8676446,8673843	8690038,8689684,8689414,8688745,8688458,8688132,8687818,8687567,8687164,8686993,8686827,8686619,8686341,8686123,8685874,8685464,8685217,8684956,8684694,8684486,8684062,8683691,8683462,8683209,8682906,8682673,8682329,8682131,8681360,8681066,8680793,8680501,8680326,8679754,8679487,8679182,8678969,8678580,8678309,8678065,8677689,8677435,8677085,8676733,8676249	
chr2	8673843	8690038	8674164	8689807	-	Cre02.g142166.t2.1	Cre02.g142166.t2.1		8689751,8689603,8688976,8688663,8688264,8687950,8687723,8687392,8687104,8686913,8686742,8686448,8686262,8686018,8685730,8685331,8685057,8684832,8684591,8684245,8683876,8683572,8683342,8683061,8682795,8682449,8682223,8681514,8681175,8680908,8680659,8680412,8679862,8679613,8679262,8679108,8678839,8678456,8678153,8677773,8677553,8677231,8676834,8676446,8673843	8690038,8689684,8689414,8688745,8688458,8688132,8687818,8687567,8687164,8686993,8686827,8686619,8686341,8686123,8685874,8685464,8685217,8684956,8684694,8684486,8684062,8683691,8683462,8683209,8682906,8682673,8682329,8682131,8681357,8681066,8680793,8680501,8680326,8679754,8679487,8679182,8678969,8678580,8678309,8678065,8677689,8677435,8677085,8676733,8676249	
chr2	8693839	8698668	8694827	8697589	-	FTSZ2	Cre02.g142186.t1.1		8698017,8697475,8697302,8697117,8696948,8696445,8696219,8696020,8695813,8695571,8695296,8693839	8698668,8697618,8697400,8697215,8697016,8696576,8696294,8696111,8695900,8695698,8695416,8695114	Transcription levels were characterized by Adams et al. 2008 [PMID: 18270733]
chr2	7826161	7829802	7826701	7829631	-	Cre02.g142200.t1.2	Cre02.g142200.t1.2		7829579,7829143,7828726,7828315,7828013,7827658,7827268,7826161	7829802,7829223,7828841,7828437,7828093,7827756,7827342,7826785	
chr2	8698720	8701758	8699141	8701305	-	Cre02.g142206.t1.1	Cre02.g142206.t1.1		8701596,8701276,8701130,8700911,8700722,8700505,8700206,8699983,8699738,8699409,8698720	8701758,8701332,8701185,8701028,8700781,8700640,8700310,8700036,8699858,8699491,8699288	
chr2	8701943	8713898	8702698	8713524	-	Cre02.g142226.t1.1	Cre02.g142226.t1.1		8713251,8712993,8712667,8712258,8711463,8711288,8711058,8710435,8710014,8709810,8709495,8708776,8708607,8708263,8708073,8707905,8707683,8707458,8707240,8707014,8706622,8706347,8706138,8705955,8705722,8705439,8705211,8704803,8704600,8701943	8713898,8713099,8712814,8712553,8712093,8711350,8711120,8710911,8710283,8709869,8709678,8709371,8708654,8708503,8708167,8707972,8707758,8707524,8707298,8707109,8706769,8706501,8706212,8706031,8705863,8705638,8705313,8704859,8704662,8704369	
chr2	8718189	8719778	8719011	8719617	-	Cre02.g142246.t1.1	Cre02.g142246.t1.1		8719471,8718189	8719778,8719162	
chr2	8719899	8725739	8720054	8724900	+	Cre02.g142266.t1.1	Cre02.g142266.t1.1		8719899,8720542,8720838,8721219,8721418,8721755,8722044,8722258,8722479,8722748,8723070,8723303,8723633,8724170,8724393,8724628	8720349,8720615,8721053,8721289,8721500,8721867,8722127,8722341,8722583,8722867,8723126,8723377,8723748,8724266,8724489,8725739	
chr2	8727275	8732778	8727997	8732673	-	Cre02.g142286.t1.1	Cre02.g142286.t1.1		8732628,8732400,8732092,8730754,8729647,8728845,8727275	8732778,8732537,8732326,8731632,8730518,8729277,8728485	
chr2	8733409	8736400	8733771	8735975	+	Cre02.g142306.t1.1	Cre02.g142306.t1.1		8733409,8734112,8734470,8734578,8734771,8735016,8735214	8734050,8734413,8734509,8734701,8734958,8735154,8736400	
chr2	8736403	8740278	8737316	8740072	-	Cre02.g142326.t1.1	Cre02.g142326.t1.1		8739403,8739131,8738948,8738577,8737941,8736403	8740278,8739318,8739055,8738886,8738471,8737835	
chr2	8743091	8748148	8745966	8746384	-	Cre02.g142346.t1.1	Cre02.g142346.t1.1		8748040,8747542,8746852,8746298,8743091	8748148,8747596,8746960,8746414,8746063	
chr2	7787753	7789560	7787914	7788734	+	Cre02.g142350.t1.2	Cre02.g142350.t1.2		7787753,7788113,7788628	7788025,7788396,7789560	
chr2	7792427	7800342	7793806	7800158	-	Cre02.g142351.t1.1	Cre02.g142351.t1.1		7799810,7799511,7799164,7798829,7798482,7797811,7797340,7796985,7796685,7796350,7795964,7795211,7794737,7794290,7792427	7800342,7799557,7799248,7798948,7798555,7798267,7797558,7797137,7796820,7796473,7796033,7795384,7794952,7794442,7794007	May contain additional coding sequence in intronic N-island PMID: 27175017
chr2	7800443	7808843	7800639	7808445	+	Cre02.g142352.t1.1	Cre02.g142352.t1.1		7800443,7801769,7802149,7802761,7803073,7803560,7804185,7804490,7804909,7805315,7805731,7806337,7806693,7807124,7808268	7801488,7801852,7802425,7802861,7803277,7803870,7804260,7804590,7804994,7805439,7805878,7806403,7806740,7807207,7808843	May contain additional coding sequence in intronic N-island PMID: 27175017
chr2	7809523	7826144	7809717	7825607	+	Cre02.g142353.t1.1	Cre02.g142353.t1.1		7809523,7810325,7810746,7812025,7812694,7813015,7813534,7813852,7814250,7814740,7815422,7816274,7816825,7817144,7817720,7818197,7818462,7818756,7819354,7820313,7821180,7821753,7822201,7822536,7823284,7824089,7824334,7824773	7809748,7810401,7811631,7812173,7812769,7813367,7813679,7814003,7814425,7815195,7816036,7816427,7816891,7817300,7817854,7818263,7818583,7819076,7819890,7820758,7821468,7822049,7822333,7823121,7823879,7824135,7824588,7826144	
chr2	8752133	8759548	8753663	8758756	-	Cre02.g142366.t1.1	Cre02.g142366.t1.1		8758647,8758524,8758313,8757920,8757292,8756814,8756583,8756119,8755440,8754790,8754469,8752133	8759548,8758563,8758454,8758135,8757408,8756933,8756648,8756274,8755772,8754902,8754566,8753887	
chr2	8764993	8766088	8765230	8765749	-	Cre02.g142386.t1.1	Cre02.g142386.t1.1		8765741,8765438,8764993	8766088,8765673,8765265	
chr2	7783203	7787444	7783813	7786461	+	CSB16	Cre02.g142400.t1.1		7783203,7784621,7785815,7786112,7786338	7783920,7785690,7785993,7786222,7787444	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	8783189	8784270	8783280	8783878	+	Cre02.g142406.t1.1	Cre02.g142406.t1.1		8783189,8783811	8783378,8784270	
chr2	8784319	8788589	8785727	8788212	+	Cre02.g142426.t1.1	Cre02.g142426.t1.1		8784319,8785689,8786005	8784412,8785773,8788589	
chr2	8790682	8794438	8793523	8794386	-	Cre02.g142446.t1.1	Cre02.g142446.t1.1		8794314,8793711,8790682	8794438,8793827,8793562	
chr2	8801783	8802828	8801839	8802490	-	Cre02.g142466.t1.1	Cre02.g142466.t1.1		8802482,8802047,8801783	8802828,8802414,8801874	
chr2	8816929	8820390	8817203	8817503	+	Cre02.g142486.t1.1	Cre02.g142486.t1.1		8816929,8817375	8817249,8820390	
chr2	8820453	8821678	8820742	8821374	-	Cre02.g142506.t1.1	Cre02.g142506.t1.1		8820950,8820453	8821678,8820777	
chr2	8822329	8826413	8822913	8825797	+	Cre02.g142526.t1.1	Cre02.g142526.t1.1		8822329	8826413	
chr2	8827843	8829958	8828139	8829846	-	Cre02.g142546.t1.1	Cre02.g142546.t1.1		8829720,8829490,8829258,8828841,8827843	8829958,8829634,8829400,8829139,8828662	
chr2	8830009	8832088	8830378	8831680	-	Cre02.g142566.t1.1	Cre02.g142566.t1.1		8831663,8831497,8831169,8830740,8830009	8832088,8831541,8831215,8830786,8830483	
chr2	8832893	8834938	8832982	8834183	-	Cre02.g142586.t1.1	Cre02.g142586.t1.1		8833816,8833526,8833191,8832893	8834938,8833702,8833415,8832999	
chr2	7736894	7741532	7739821	7741227	-	Cre02.g142600.t1.1	Cre02.g142600.t1.1		7741069,7736894	7741532,7739840	
chr2	7741847	7754922	7743268	7754550	-	Cre02.g142601.t1.1	Cre02.g142601.t1.1		7754398,7753966,7753548,7753003,7752780,7752513,7752216,7751204,7746668,7744761,7741847	7754922,7754088,7753616,7753126,7752896,7752629,7752320,7751451,7751038,7746529,7744563	
chr2	7756923	7773772	7757903	7773674	-	Cre02.g142602.t1.1	Cre02.g142602.t1.1		7773656,7773211,7772909,7771961,7771657,7769460,7768195,7760245,7759396,7759101,7756923	7773772,7773327,7773013,7772164,7771841,7771550,7769340,7768139,7760061,7759198,7758782	
chr2	7756923	7773032	7757903	7772757	-	Cre02.g142602.t2.1	Cre02.g142602.t2.1		7772631,7771961,7771657,7769460,7768195,7760245,7759396,7759101,7756923	7773032,7772164,7771841,7771550,7769340,7768139,7760061,7759198,7758782	
chr2	7773133	7776354	7773214	7773383	+	Cre02.g142604.t1.1	Cre02.g142604.t1.1		7773133	7776354	
chr2	7777497	7779032	7777895	7778949	-	Cre02.g142605.t1.1	Cre02.g142605.t1.1		7778935,7778447,7778177,7777497	7779032,7778570,7778293,7778012	
chr2	7779133	7783062	7779281	7780969	+	Cre02.g142606.t1.1	Cre02.g142606.t1.1		7779133,7779815,7780137,7780578,7780885	7779391,7779864,7780190,7780624,7783062	
chr2	8835459	8848230	8836109	8846191	+	Cre02.g142607.t1.1	Cre02.g142607.t1.1		8835459,8836197,8836340,8836581,8837381,8837625,8837983,8838341,8840354,8840900,8841209,8841395,8841679,8841998,8842289,8842608,8842927,8843246,8843565,8843884,8844203,8844522,8844765,8844958,8845133,8845350,8845480,8845675,8845995	8836124,8836265,8836432,8837247,8837517,8837801,8838159,8840257,8840827,8841100,8841305,8841487,8841813,8842105,8842423,8842742,8843061,8843380,8843699,8844018,8844337,8844701,8844886,8845068,8845288,8845421,8845611,8845841,8848230	
chr2	8848236	8860478	8848679	8859717	-	Cre02.g142627.t1.1	Cre02.g142627.t1.1		8859606,8859175,8858770,8858626,8858502,8858374,8858207,8857987,8857668,8857349,8857029,8856709,8856390,8856071,8855751,8855431,8855112,8854793,8854474,8854154,8853835,8853524,8853296,8853155,8852959,8852693,8852261,8851954,8851654,8851335,8850932,8850613,8850288,8849996,8849779,8849487,8848236	8860478,8859540,8859083,8858713,8858567,8858433,8858306,8858121,8857802,8857483,8857163,8856843,8856524,8856205,8855885,8855565,8855246,8854927,8854608,8854288,8853969,8853649,8853339,8853204,8853094,8852899,8852627,8852061,8851761,8851469,8851150,8850747,8850422,8850103,8849886,8849594,8849293	null-allele passenger mutation was isolated (PMID 29743196)
chr2	8848236	8860478	8848679	8859717	-	Cre02.g142627.t2.1	Cre02.g142627.t2.1		8859606,8859175,8858770,8858626,8858502,8858374,8858207,8857987,8857668,8857349,8857029,8856709,8856390,8856071,8855751,8855431,8855112,8854793,8854474,8854154,8853835,8853524,8853296,8853155,8852959,8852693,8852261,8851954,8851654,8851335,8850932,8850613,8850288,8849996,8849487,8848236	8860478,8859540,8859083,8858713,8858567,8858433,8858306,8858121,8857802,8857483,8857163,8856843,8856524,8856205,8855885,8855565,8855246,8854927,8854608,8854288,8853969,8853649,8853339,8853204,8853094,8852899,8852627,8852061,8851761,8851469,8851150,8850747,8850422,8850103,8849594,8849293	null-allele passenger mutation was isolated (PMID 29743196)
chr2	8848236	8860478	8848679	8859717	-	Cre02.g142627.t3.1	Cre02.g142627.t3.1		8859606,8859175,8858770,8858626,8858502,8858374,8858207,8857668,8857349,8857029,8856709,8856390,8856071,8855751,8855431,8855112,8854793,8854474,8854154,8853835,8853524,8853296,8853155,8852959,8852693,8852261,8851954,8851654,8851335,8850932,8850613,8850288,8849996,8849779,8849487,8848236	8860478,8859540,8859083,8858713,8858567,8858433,8858306,8857802,8857483,8857163,8856843,8856524,8856205,8855885,8855565,8855246,8854927,8854608,8854288,8853969,8853649,8853339,8853204,8853094,8852899,8852627,8852061,8851761,8851469,8851150,8850747,8850422,8850103,8849886,8849594,8849293	null-allele passenger mutation was isolated (PMID 29743196)
chr2	8860532	8861408	8860764	8860945	-	Cre02.g142647.t1.1	Cre02.g142647.t1.1		8860532	8861408	
chr2	7729855	7736842	7731964	7736791	-	Cre02.g142650.t1.1	Cre02.g142650.t1.1		7736762,7736469,7736026,7735677,7735412,7735147,7734891,7732880,7729855	7736842,7736591,7736094,7735800,7735528,7735263,7734995,7734305,7732743	
chr2	8877806	8881568	8880636	8881481	-	Cre02.g142667.t1.1	Cre02.g142667.t1.1		8881432,8881015,8877806	8881568,8881161,8880677	
chr2	8906867	8908423	8906894	8908049	+	FAP332	Cre02.g142687.t2.1		8906867,8907024,8907164,8907299,8907522,8907961	8906960,8907105,8907234,8907418,8907640,8908423	Similar to ADP-ribosylation factor 1
chr2	8906619	8908423	8906894	8908049	+	FAP332	Cre02.g142687.t1.1		8906619,8906848,8907024,8907164,8907299,8907522,8907961	8906763,8906960,8907105,8907234,8907418,8907640,8908423	Similar to ADP-ribosylation factor 1
chr2	7723443	7729692	7725048	7729506	-	Cre02.g142700.t1.2	Cre02.g142700.t1.2		7729478,7729182,7728703,7727953,7723443	7729692,7729222,7728813,7728360,7727685	
chr2	8912878	8915494	8915269	8915459	-	Cre02.g142707.t1.1	Cre02.g142707.t1.1		8912878	8915494	
chr2	8915569	8918184	8917610	8918113	-	Cre02.g142727.t1.1	Cre02.g142727.t1.1		8918068,8917702,8915569	8918184,8917825,8917627	
chr2	8918601	8921984	8921482	8921951	-	Cre02.g142747.t1.1	Cre02.g142747.t1.1		8921943,8921716,8918601	8921984,8921761,8921617	
chr2	7717172	7723392	7718167	7723362	-	Cre02.g142750.t1.2	Cre02.g142750.t1.2		7719562,7717172	7723392,7719317	
chr2	7717172	7723652	7718167	7723362	-	Cre02.g142750.t2.1	Cre02.g142750.t2.1		7723544,7719562,7717172	7723652,7723385,7719317	
chr2	8923835	8925116	8924179	8924945	+	Cre02.g142767.t1.1	Cre02.g142767.t1.1		8923835,8924355,8924877	8924245,8924820,8925116	
chr2	8930430	8934874	8932999	8934767	-	Cre02.g142787.t1.1	Cre02.g142787.t1.1		8934639,8934367,8933884,8933530,8930430	8934874,8934423,8934094,8933748,8933386	
chr2	8930839	8934874	8932999	8934767	-	Cre02.g142787.t2.1	Cre02.g142787.t2.1		8934639,8934367,8933884,8933530,8930839	8934874,8934423,8934094,8933748,8933386	
chr2	7714343	7717050	7714512	7716000	+	TRXz	Cre02.g142800.t1.2		7714343,7714821,7715151,7715419,7715835	7714695,7714898,7715195,7715499,7717050	Putative Thioredoxin, similar to CITRX, a protein that appears to be involved in the regulation of plant disease resistance [PMID: 15131698]. Contains a putative transit sequence but sorting programs perform unclear prediction for the possible subcellular localization.
chr2	8935055	8940366	8935250	8937423	+	Cre02.g142807.t1.1	Cre02.g142807.t1.1		8935055,8936045,8936259,8936631,8936994,8937267	8935858,8936118,8936497,8936813,8937065,8940366	
chr2	8942719	8945634	8943237	8945563	-	Cre02.g142827.t1.1	Cre02.g142827.t1.1		8943853,8942719	8945634,8943672	
chr2	8945765	8947316	8945815	8946433	+	Cre02.g142847.t1.1	Cre02.g142847.t1.1		8945765,8946141	8945946,8947316	
chr2	7710153	7712792	7711641	7712665	-	SMP11	Cre02.g142850.t1.2		7712625,7712487,7712221,7711912,7710153	7712792,7712527,7712295,7711967,7711732	similar to Sm-protein (SMP6c)
chr2	7712893	7714144	7713379	7713566	+	Cre02.g142852.t1.1	Cre02.g142852.t1.1		7712893,7713373	7713174,7714144	
chr2	8947835	8951246	8948157	8950516	+	Cre02.g142867.t1.1	Cre02.g142867.t1.1		8947835,8948025,8948608,8949072,8949306,8949555,8949900,8950105	8947909,8948511,8948643,8949196,8949437,8949667,8949985,8951246	
chr2	8951259	8952964	8951424	8952896	-	Cre02.g142887.t1.1	Cre02.g142887.t1.1		8952800,8952320,8951860,8951680,8951259	8952964,8952637,8952158,8951740,8951580	
chr2	7704593	7710144	7704807	7709904	+	Cre02.g142900.t1.2	Cre02.g142900.t1.2		7704593,7705320,7705763,7706107,7708272,7708569	7704987,7705419,7705980,7708004,7708398,7710144	
chr2	8960525	8969916	8960588	8967947	+	Cre02.g142907.t1.1	Cre02.g142907.t1.1		8960525,8962852,8963498,8963719,8967302	8962008,8963222,8963533,8966502,8969916	
chr2	8976359	8978164	8976469	8977934	-	Cre02.g142927.t1.1	Cre02.g142927.t1.1		8977656,8977294,8976538,8976359	8978164,8977594,8976577,8976469	
chr2	8978289	8981784	8979154	8981635	-	CSU1	Cre02.g142947.t1.1		8981401,8981056,8980398,8978289	8981784,8981322,8980940,8979985	probably tranposon-derived
chr2	7702447	7704412	7702849	7703635	-	Cre02.g142950.t1.2	Cre02.g142950.t1.2		7703617,7703482,7703214,7702447	7704412,7703555,7703316,7703059	
chr2	8986315	8989896	8986746	8989876	+	Cre02.g142967.t1.1	Cre02.g142967.t1.1		8986315,8987243,8987794,8988080,8989399	8986765,8987494,8987940,8989275,8989896	
chr2	8989965	9000301	8990263	9000163	+	Cre02.g142987.t1.1	Cre02.g142987.t1.1		8989965,8994758,8995006,8997517,8997871	8994664,8994871,8997385,8997725,9000301	
chr2	7699363	7702444	7699415	7701423	+	PLSB1	Cre02.g143000.t1.2		7699363,7701291	7700516,7702444	
chr2	9000310	9003115	9000332	9002492	-	Cre02.g143007.t1.1	Cre02.g143007.t1.1		9002126,9001190,9000310	9003115,9001861,9000941	
chr2	9011200	9013485	9011398	9013406	-	Cre02.g143027.t1.1	Cre02.g143027.t1.1		9013272,9012541,9011200	9013485,9012941,9011565	
chr2	9011200	9013715	9011398	9013406	-	Cre02.g143027.t2.1	Cre02.g143027.t2.1		9013272,9012541,9011200	9013715,9012941,9011565	
chr2	9016109	9018945	9016362	9017958	-	Cre02.g143047.t1.1	Cre02.g143047.t1.1		9018424,9016953,9016109	9018945,9017978,9016854	
chr2	7696850	7698022	7696913	7697717	-	RPP2	Cre02.g143050.t1.2		7697690,7697564,7697405,7697174,7696850	7698022,7697624,7697475,7697317,7696940	Cytosolic 80S ribosomal protein P2; Cytosolic 60S large ribosomal subunit protein P2
chr2	7698163	7699248	7698191	7698717	+	Cre02.g143052.t1.1	Cre02.g143052.t1.1		7698163,7698477	7698233,7699248	
chr2	9019076	9021197	9019344	9020544	+	Cre02.g143067.t2.1	Cre02.g143067.t2.1		9019076,9019572,9019974,9020544	9019352,9019688,9020163,9021197	
chr2	9019026	9021797	9019344	9020041	+	Cre02.g143067.t1.1	Cre02.g143067.t1.1		9019026,9019572,9019974	9019352,9019688,9021797	
chr2	9019046	9025007	9020036	9022242	+	Cre02.g143087.t1.1	Cre02.g143087.t1.1		9019046,9019572,9019974,9020544,9020934,9021170,9021462,9022080	9019352,9019664,9020163,9020614,9020973,9021236,9021516,9025007	
chr2	9019046	9025007	9020036	9024612	+	Cre02.g143087.t2.1	Cre02.g143087.t2.1		9019046,9019572,9019974,9020544,9020934,9021170,9021462,9022080,9022349,9023034,9024125,9024612	9019352,9019664,9020163,9020614,9020973,9021236,9021516,9022245,9022782,9023798,9024293,9025007	
chr2	9022656	9025007	9022713	9023202	+	Cre02.g143107.t1.1	Cre02.g143107.t1.1		9022656,9023034	9022782,9025007	
chr2	9025010	9028635	9027984	9028268	-	Cre02.g143127.t1.1	Cre02.g143127.t1.1		9028185,9025010	9028635,9028102	
chr2	9038447	9040955	9040229	9040762	-	Cre02.g143147.t1.1	Cre02.g143147.t1.1		9040567,9040382,9038447	9040955,9040501,9040235	
chr2	7674216	7682357	7675181	7680725	+	Cre02.g143150.t1.1	Cre02.g143150.t1.1		7674216,7675120,7675670,7677782	7674854,7675515,7677615,7682357	
chr2	7682420	7696065	7682888	7695358	-	Cre02.g143151.t1.1	Cre02.g143151.t1.1		7695193,7694984,7694698,7692565,7692265,7691853,7691252,7690593,7690120,7689634,7688861,7685775,7685162,7684534,7684216,7683825,7682420	7696065,7695046,7694798,7694182,7692455,7692072,7691623,7690865,7690425,7689884,7689230,7688128,7685579,7684881,7684257,7683955,7683582	Belongs to the Spc97/98 family; these components interact with gamma-tubulin
chr2	9043710	9047925	9046425	9047276	-	Cre02.g143167.t1.1	Cre02.g143167.t1.1		9047272,9046823,9046613,9043710	9047925,9047133,9046738,9046524	
chr2	9046160	9047925	9046425	9047276	-	Cre02.g143167.t2.1	Cre02.g143167.t2.1		9047272,9046823,9046613,9046160	9047925,9047133,9046738,9046524	
chr2	9048554	9051805	9051335	9051528	-	Cre02.g143187.t1.1	Cre02.g143187.t1.1		9048554	9051805	
chr2	7663336	7674167	7663955	7673496	+	TSA1	Cre02.g143200.t1.1		7663336,7663923,7664322,7665410,7665872,7666331,7666786,7667155,7667483,7667924,7668260,7668875,7669365,7669703,7670111,7670406,7670894,7671783,7672141,7672521,7672920,7673342	7663430,7664012,7664758,7665710,7665962,7666467,7666845,7667300,7667747,7668066,7668435,7669068,7669448,7669858,7670173,7670557,7671097,7671933,7672323,7672708,7673072,7674167	
chr2	9051906	9054157	9052861	9053701	+	Cre02.g143207.t1.1	Cre02.g143207.t1.1		9051906,9052855,9053203	9052313,9052918,9054157	
chr2	9054260	9060085	9054292	9058862	-	Cre02.g143227.t1.1	Cre02.g143227.t1.1		9059546,9059210,9058735,9058284,9057925,9057662,9057382,9056653,9056418,9056116,9055100,9054605,9054260	9060085,9059326,9058924,9058354,9057964,9057728,9057436,9056818,9056549,9056159,9055864,9054773,9054292	
chr2	9054260	9060085	9054292	9058862	-	Cre02.g143227.t2.1	Cre02.g143227.t2.1		9059546,9059234,9058735,9058284,9057925,9057662,9057382,9056653,9056418,9056116,9055100,9054605,9054260	9060085,9059326,9058924,9058354,9057964,9057728,9057436,9056818,9056549,9056159,9055864,9054773,9054292	
chr2	9054260	9060085	9054292	9058862	-	Cre02.g143227.t3.1	Cre02.g143227.t3.1		9059546,9059234,9058735,9058284,9057925,9057662,9057382,9056653,9056116,9055100,9054605,9054260	9060085,9059326,9058924,9058354,9057964,9057728,9057436,9056818,9056549,9055864,9054773,9054292	
chr2	9060856	9062337	9061044	9061789	+	Cre02.g143247.t1.1	Cre02.g143247.t1.1		9060856	9062337	
chr2	7658830	7663200	7659824	7663127	-	IDH2	Cre02.g143250.t1.2		7662926,7662614,7662207,7661786,7661372,7660169,7658830	7663200,7662853,7662317,7661902,7661471,7660342,7659907	isocitrate dehydrogenase, NAD-dependent, possibly mitochondrial based on homology to AT3G09810
chr2	9062976	9066377	9064673	9065793	+	Cre02.g143267.t1.1	Cre02.g143267.t1.1		9062976,9064663	9063739,9066377	
chr2	9072356	9075677	9072470	9072684	+	Cre02.g143287.t1.1	Cre02.g143287.t1.1		9072356	9075677	
chr2	7656130	7658775	7656744	7658741	-	Cre02.g143300.t1.2	Cre02.g143300.t1.2		7658477,7658155,7657700,7657328,7656130	7658775,7658307,7657859,7657427,7656934	
chr2	9096597	9097700	9096686	9096852	+	CLPC1	Cre02.g143307.t1.1		9096597	9097700	Probably chloroplastic (by homology); possibly the ATP-dependent subunit of Clp protease, as its Volvox orthologue contains the IGF motif that binds ClpP (PMID: 11224567)
chr2	9098496	9104961	9098930	9104124	+	Cre02.g143327.t1.1	Cre02.g143327.t1.1		9098496,9099129,9099869,9100136,9100647,9101961,9102642,9103315,9103659,9103848	9099035,9099263,9099904,9100310,9100864,9102326,9102863,9103370,9103695,9104961	
chr2	9105230	9111215	9105867	9111112	-	Cre02.g143347.t1.1	Cre02.g143347.t1.1		9111107,9110583,9110399,9109237,9108536,9107485,9105230	9111215,9110788,9110437,9109338,9108866,9108310,9107193	
chr2	9105230	9110856	9105867	9110598	-	Cre02.g143347.t2.1	Cre02.g143347.t2.1		9110583,9110364,9110226,9109237,9108536,9107485,9105230	9110856,9110437,9110272,9109338,9108866,9108310,9107193	
chr2	7642444	7652015	7644334	7651656	-	PDE6	Cre02.g143350.t1.1		7651518,7651247,7650761,7650514,7649690,7649129,7648689,7648287,7647955,7647654,7647294,7646222,7645935,7645673,7645349,7645094,7644845,7642444	7652015,7651375,7650833,7650605,7650027,7649405,7648810,7648390,7648115,7647786,7647353,7647141,7646092,7645832,7645546,7645236,7644956,7644724	3',5'-cyclic-nucleotide phosphodiesterase. Similarity restricted to carboxy terminus. Most similar to PDE1 C of mouse
chr2	7653446	7656117	7653761	7655251	+	Cre02.g143352.t1.1	Cre02.g143352.t1.1		7653446,7654195,7655114	7654049,7654933,7656117	
chr2	9111819	9114475	9112136	9114292	-	Cre02.g143367.t1.1	Cre02.g143367.t1.1		9114201,9114015,9113649,9113294,9112894,9112659,9111819	9114475,9114064,9113753,9113416,9113010,9112715,9112286	
chr2	9114756	9117427	9115231	9116955	+	Cre02.g143387.t1.1	Cre02.g143387.t1.1		9114756,9115795,9116137,9116863	9115314,9115955,9116256,9117427	
chr2	7640816	7642427	7641260	7641828	+	Cre02.g143392.t1.2	Cre02.g143392.t1.2		7640816	7642427	
chr2	7630058	7640545	7631958	7640167	-	PDE27	Cre02.g143400.t1.1		7640164,7639603,7639272,7638990,7638414,7638216,7637859,7637607,7637351,7637010,7636792,7636278,7635836,7635590,7634285,7633723,7633457,7633129,7632880,7632500,7632138,7630058	7640545,7639688,7639314,7639033,7638537,7638248,7638077,7637693,7637487,7637186,7636895,7636438,7636085,7635661,7635339,7633880,7633616,7633326,7633022,7632605,7632389,7632018	Metal-dependent phosphohydrolase
chr2	9119796	9122967	9119955	9121007	+	Cre02.g143407.t1.1	Cre02.g143407.t1.1		9119796,9120408,9120720	9120133,9120455,9122967	
chr2	9124376	9130977	9124666	9129342	+	Cre02.g143427.t1.1	Cre02.g143427.t1.1		9124376,9125017,9127390,9128149,9128402,9128634,9129297	9124742,9125064,9127574,9128256,9128476,9128855,9130977	
chr2	9130980	9137875	9131275	9136939	-	Cre02.g143447.t1.1	Cre02.g143447.t1.1		9137080,9136911,9136212,9132756,9132292,9131803,9130980	9137875,9136962,9136621,9132885,9132377,9131907,9131575	
chr2	7627056	7630047	7627120	7629541	+	Cre02.g143450.t1.2	Cre02.g143450.t1.2		7627056,7627504,7628080,7628431,7628714,7629092,7629460	7627259,7627634,7628151,7628466,7628802,7629191,7630047	
chr2	9137976	9145357	9138314	9143725	+	Cre02.g143467.t1.1	Cre02.g143467.t1.1		9137976,9138775,9139610,9139935,9140358,9140781,9141204,9141558,9141753,9142099,9142367,9142551,9142815,9143056,9143172,9143325,9143529	9138567,9139500,9139788,9140156,9140579,9141002,9141428,9141645,9142009,9142296,9142492,9142757,9142991,9143112,9143258,9143434,9145357	
chr2	9145359	9158325	9146017	9157540	-	Cre02.g143487.t1.1	Cre02.g143487.t1.1		9157540,9157113,9156665,9156521,9156352,9155974,9155590,9155212,9154828,9154444,9154129,9153929,9153548,9153170,9152792,9152414,9152036,9151658,9151280,9150902,9150524,9150146,9149768,9149390,9149012,9148634,9148541,9148256,9148013,9147825,9147545,9147087,9146818,9146447,9146278,9145359	9158325,9157481,9156984,9156608,9156441,9156135,9155678,9155373,9154995,9154611,9154227,9153991,9153709,9153331,9152953,9152575,9152197,9151819,9151441,9151063,9150685,9150307,9149929,9149551,9149173,9148795,9148556,9148417,9148062,9147960,9147748,9147489,9146886,9146615,9146346,9146072	
chr2	7614876	7626527	7615111	7625014	+	PDE28	Cre02.g143500.t1.1		7614876,7615758,7616206,7616495,7616764,7617148,7617343,7617728,7617955,7618235,7618621,7618991,7619346,7621039,7622356,7622633,7622933,7623247,7623558,7624199,7624702	7615225,7615843,7616248,7616538,7616887,7617180,7617561,7617814,7618091,7618411,7618730,7619151,7620680,7622166,7622428,7622720,7623092,7623444,7623880,7624448,7626527	null-allele mutant was isolated (PMID 29743196)
chr2	9158426	9167917	9160191	9166935	+	Cre02.g143507.t1.1	Cre02.g143507.t1.1		9158426,9160161,9160651,9160959,9162308,9164873,9166565,9166935	9159164,9160369,9160698,9161954,9163019,9165629,9166884,9167917	
chr2	9167966	9174259	9169285	9173120	+	Cre02.g143527.t1.1	Cre02.g143527.t1.1		9167966,9169255,9169734,9171117,9171878,9172148,9172388,9173075	9167981,9169469,9169781,9171301,9171988,9172222,9172609,9174259	null-allele mutant was isolated (PMID 29743196)
chr2	9167966	9174259	9169393	9173120	+	Cre02.g143527.t2.1	Cre02.g143527.t2.1		9167966,9169255,9169734,9171117,9171878,9172148,9172388,9173075	9167981,9169469,9169781,9171301,9171988,9172222,9172609,9174259	null-allele mutant was isolated (PMID 29743196)
chr2	9175304	9180545	9175549	9180347	-	Cre02.g143547.t1.1	Cre02.g143547.t1.1		9180251,9179743,9179043,9178545,9178168,9177668,9177003,9176712,9176402,9176084,9175304	9180545,9180055,9179365,9178735,9178247,9177719,9177411,9176841,9176487,9176188,9175843	
chr2	7610686	7613094	7610807	7612140	+	LCI16	Cre02.g143550.t1.2		7610686,7611180,7612041	7611053,7611677,7613094	A homolog of ELIP (early light-inducible protein) gene which was originally identified as transiently expressed during the early phase of greening in etiolated pea seedlings [PMID: 6692824]. It has three TMH, whose sequences are closely related to LHC proteins
chr2	9180870	9184075	9181463	9183962	-	Cre02.g143567.t1.1	Cre02.g143567.t1.1		9183857,9183446,9182648,9182349,9181908,9180870	9184075,9183566,9182685,9182399,9182049,9181531	
chr2	9184496	9192648	9184630	9191867	+	Cre02.g143587.t1.1	Cre02.g143587.t1.1		9184496,9185675,9186825,9187641,9188530,9188790,9189415,9189945,9190492	9185263,9186500,9186979,9187654,9188584,9188973,9189574,9190028,9192648	
chr2	7598250	7610575	7599016	7610275	-	FEE1	Cre02.g143600.t1.1		7610071,7609340,7608005,7607610,7607207,7606790,7606255,7605888,7605348,7604845,7604494,7604235,7603647,7602849,7602590,7602143,7601034,7600223,7599197,7598250	7610575,7609460,7609198,7607677,7607290,7606981,7606371,7606015,7605453,7605025,7604646,7604290,7604085,7603353,7602716,7602409,7601881,7600802,7600054,7599049	Hydrolyzes feruloyl-polyssaccharide bond in the presence of water.  Ferulate/ferulic acid,a derivative of trans-cinnamic acid, is an organic compound that is an abundant phenolic phytochemical found in plant cell walls
chr2	9192716	9195737	9192980	9195263	+	Cre02.g143607.t1.1	Cre02.g143607.t1.1		9192716,9193611,9194573	9193182,9194344,9195737	
chr2	9195790	9197855	9195832	9197733	-	Cre02.g143627.t1.1	Cre02.g143627.t1.1		9197709,9195989,9195790	9197855,9197315,9195843	
chr2	7594028	7598095	7595293	7597874	-	Cre02.g143635.t1.2	Cre02.g143635.t1.2		7597727,7597018,7596592,7595791,7594028	7598095,7597176,7596783,7596255,7595494	
chr2	9199529	9202524	9200782	9201020	-	Cre02.g143647.t1.1	Cre02.g143647.t1.1		9202354,9202011,9199529	9202524,9202075,9201085	
chr2	7586682	7593055	7588031	7592824	-	Cre02.g143650.t1.2	Cre02.g143650.t1.2		7592617,7592341,7591414,7591045,7590734,7590536,7590211,7589613,7586682	7593055,7592389,7592171,7591221,7590827,7590580,7590287,7589900,7588307	
chr2	7588730	7593055	7589591	7592824	-	Cre02.g143650.t2.1	Cre02.g143650.t2.1		7592617,7592341,7591414,7591045,7590734,7590536,7590211,7588730	7593055,7592389,7592171,7591221,7590827,7590580,7590287,7589900	
chr2	9211285	9216656	9211421	9215565	+	PLPA9	Cre02.g143667.t1.1		9211285,9211716,9212161,9212587,9212909,9213436,9213964,9214932,9215393	9211486,9211831,9212351,9212637,9213101,9213506,9214224,9215068,9216656	Conserved expressed protein related to plastid lipid associated protein PAP/fibrillin; Arabidopsis homologue is in plastoglobuli (PMID: 16461379)
chr2	7559986	7576550	7560206	7575416	+	Cre02.g143800.t1.1	Cre02.g143800.t1.1		7559986,7560579,7562679,7563174,7563465,7563960,7564331,7565131,7565466,7565850,7566219,7566557,7566897,7567172,7567707,7568061,7568444,7568749,7568951,7569307,7569720,7570055,7570411,7570850,7571496,7571911,7573405	7560308,7562540,7562924,7563302,7563710,7564037,7564881,7565189,7565534,7565935,7566315,7566591,7566955,7567241,7567804,7568114,7568477,7568826,7569021,7569409,7569782,7570153,7570506,7570916,7571599,7573115,7576550	SNF2-related helicase.  ChromoDB CHR3426
chr2	7579291	7584885	7579378	7584138	-	Cre02.g143801.t3.1	Cre02.g143801.t3.1		7584038,7581929,7579291	7584885,7583716,7581771	
chr2	7576590	7584885	7579378	7584138	-	Cre02.g143801.t1.1	Cre02.g143801.t1.1		7584038,7581929,7576590	7584885,7583716,7581771	
chr2	7576590	7583605	7579378	7583571	-	Cre02.g143801.t2.1	Cre02.g143801.t2.1		7581929,7576590	7583605,7581771	
chr2	7581341	7584885	7581381	7584138	-	Cre02.g143801.t4.1	Cre02.g143801.t4.1		7584038,7581929,7581475,7581341	7584885,7583716,7581771,7581410	
chr2	7556980	7559505	7557416	7559470	-	Cre02.g143850.t1.1	Cre02.g143850.t1.1		7559413,7559034,7558718,7558372,7557869,7556980	7559505,7559345,7558885,7558508,7558000,7557696	
chr2	7556080	7556925	7556339	7556830	-	Cre02.g143858.t1.2	Cre02.g143858.t1.2		7556751,7556460,7556080	7556925,7556573,7556339	
chr2	7552965	7556015	7553238	7555914	-	Cre02.g143861.t1.2	Cre02.g143861.t1.2		7555613,7555473,7555247,7554825,7554448,7554022,7553589,7552965	7556015,7555527,7555313,7555076,7554672,7554220,7553681,7553327	
chr2	7546438	7550735	7546995	7550499	-	Cre02.g143900.t1.1	Cre02.g143900.t1.1		7550330,7549888,7549672,7549408,7548770,7548241,7547751,7547416,7546438	7550735,7550115,7549726,7549474,7548973,7548465,7547925,7547505,7547093	
chr2	7493581	7495732	7493722	7495382	+	Cre02.g144000.t1.2	Cre02.g144000.t1.2		7493581,7494417,7494746,7495199	7494151,7494514,7494908,7495732	Indigoidine is a blue pigment synthesized by the pathogenic bacterium Erwinia and necessary for virulence [PMID: 11790734]; higher plants also possess an homologue of indA.  Previously annotated as INDA
chr2	7495781	7502032	7495806	7501779	+	Cre02.g144001.t1.1	Cre02.g144001.t1.1		7495781,7497482,7497880,7498268,7500436,7501088,7501486	7496706,7497630,7498006,7500197,7500828,7501207,7502032	
chr2	7502035	7507730	7502493	7507610	-	PUS20	Cre02.g144002.t1.1		7507503,7506904,7506391,7506010,7505588,7505261,7504531,7504133,7503611,7503036,7502035	7507730,7507126,7506584,7506096,7505784,7505349,7504686,7504296,7503816,7503364,7502799	
chr2	7502035	7507730	7502493	7507610	-	PUS20	Cre02.g144002.t2.1		7507503,7506904,7506391,7506010,7505588,7505261,7504531,7504184,7503611,7503036,7502035	7507730,7507126,7506584,7506096,7505784,7505349,7504686,7504296,7503816,7503364,7502799	
chr2	7507851	7511598	7508227	7510583	+	Cre02.g144004.t1.1	Cre02.g144004.t1.1		7507851,7508578,7509323,7510196	7508342,7509051,7509990,7511598	
chr2	7511651	7517830	7511755	7517090	+	Cre02.g144005.t1.1	Cre02.g144005.t1.1		7511651,7512286,7512866,7513184,7513469,7513767,7514088,7514377,7514847,7515384,7515779,7516221,7516513,7517026	7511876,7512340,7512932,7513205,7513511,7513798,7514179,7514424,7514990,7515511,7515837,7516318,7516541,7517830	
chr2	7517835	7525760	7518035	7525600	-	Cre02.g144006.t1.1	Cre02.g144006.t1.1		7524544,7524056,7523600,7523175,7522934,7522204,7521829,7520974,7520684,7520365,7520011,7519600,7518661,7517835	7525760,7524193,7523682,7523265,7522987,7522548,7521882,7521561,7520784,7520452,7520064,7519739,7519000,7518416	
chr2	7525962	7527210	7526435	7527102	-	Cre02.g144007.t1.1	Cre02.g144007.t1.1		7527053,7526749,7525962	7527210,7526835,7526527	
chr2	7527265	7531190	7527661	7530718	-	Cre02.g144008.t1.1	Cre02.g144008.t1.1		7530372,7529951,7529729,7529463,7529063,7527265	7531190,7530256,7529815,7529635,7529239,7528771	
chr2	7527265	7530750	7527661	7530718	-	Cre02.g144008.t2.1	Cre02.g144008.t2.1		7530372,7529951,7529729,7529463,7529063,7527265	7530750,7530256,7529815,7529635,7529239,7528771	
chr2	7536820	7539925	7537112	7539816	-	Cre02.g144009.t1.1	Cre02.g144009.t1.1		7539506,7539222,7538976,7538397,7537953,7537480,7536820	7539925,7539276,7539054,7538735,7538177,7537663,7537129	
chr2	7540308	7546055	7540865	7545946	-	Cre02.g144010.t1.1	Cre02.g144010.t1.1		7545636,7545352,7545106,7544137,7543774,7543558,7543294,7542656,7542127,7541637,7541302,7540308	7546055,7545406,7545184,7544191,7544001,7543612,7543360,7542859,7542351,7541811,7541391,7540963	
chr2	7485261	7493527	7485510	7493141	+	ELG36	Cre02.g144050.t1.2		7485261,7485704,7485862,7486217,7486658,7487184,7487410,7487768,7487854,7488155,7488552,7488827,7489077,7489399,7489790,7490215,7490791,7491249,7491519,7491863,7492178,7492627,7492949	7485605,7485759,7485967,7486322,7486816,7487285,7487513,7487779,7487948,7488242,7488643,7488868,7489179,7489465,7489873,7490315,7490860,7491355,7491597,7491905,7492311,7492743,7493527	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr2	7485261	7493527	7485510	7493141	+	ELG36	Cre02.g144050.t2.1		7485261,7485704,7485862,7486217,7486658,7487184,7487410,7487854,7488155,7488552,7488827,7489077,7489399,7489790,7490215,7490791,7491249,7491519,7491863,7492178,7492627,7492949	7485605,7485759,7485967,7486322,7486816,7487285,7487513,7487948,7488242,7488643,7488868,7489179,7489465,7489873,7490315,7490860,7491355,7491597,7491905,7492311,7492743,7493527	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr2	7477421	7484852	7477695	7484225	+	ELG12	Cre02.g144100.t1.2		7477421,7477950,7478112,7478373,7478678,7479023,7479250,7479523,7479968,7480181,7480413,7480638,7480868,7481118,7482201,7482650,7483020,7483273,7483576,7483800	7477856,7478005,7478217,7478478,7478824,7479124,7479353,7479617,7480055,7480272,7480454,7480740,7480934,7481198,7482298,7482719,7483120,7483351,7483618,7484852	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr2	7452001	7457652	7452110	7456937	+	CYP769A1	Cre02.g144250.t1.1		7452001,7452309,7452466,7453218,7453663,7454326,7454604,7454908,7455610,7456247	7452242,7452351,7452773,7453337,7453800,7454496,7454683,7455116,7455746,7457652	cytochrome P450, most like CYP4 family sequences in animals. Bottom half is 38% to CYP4X1 in mammals, also 39% to Kineococcus radiotolerans CDS 46168-47457 (AAEF02000012.1).
chr2	7457660	7465350	7458035	7464732	-	Cre02.g144251.t1.1	Cre02.g144251.t1.1		7464958,7464702,7464327,7463937,7463653,7463319,7462822,7462486,7462253,7461708,7461286,7460870,7460621,7460190,7459783,7459398,7459029,7458706,7458385,7457660	7465350,7464812,7464448,7463982,7463719,7463374,7462936,7462576,7462295,7461889,7461385,7460934,7460690,7460402,7459977,7459533,7459117,7458912,7458425,7458105	
chr2	7465405	7476270	7465873	7476126	-	Cre02.g144252.t1.1	Cre02.g144252.t1.1		7475609,7475366,7474888,7474626,7474243,7473857,7473342,7472832,7472384,7471851,7471453,7471210,7470740,7470236,7469788,7468563,7465405	7476270,7475474,7475069,7474663,7474371,7473961,7473440,7472996,7472434,7471937,7471554,7471304,7470908,7470337,7469883,7469432,7468276	
chr2	7446445	7451610	7446871	7451359	-	Cre02.g144300.t1.2	Cre02.g144300.t1.2		7451335,7450965,7450559,7450128,7449687,7448999,7448677,7448131,7447616,7447375,7446445	7451610,7451021,7450600,7450301,7449829,7449143,7448748,7448265,7447673,7447426,7447187	
chr2	7442725	7445430	7443265	7445127	-	RJL1	Cre02.g144350.t1.2		7445017,7444845,7444275,7443636,7442725	7445430,7444932,7444448,7443737,7443409	Expressed Protein. Rab-type GTPase distantly related to RabJ-like proteins in mammals and protists.; Member of the RJL family in the Ras superfamily of GTPases [PMID: 14980719]. Cellular function unknown at present.
chr2	7442905	7445430	7443265	7445127	-	RJL1	Cre02.g144350.t2.1		7445017,7444845,7444275,7443636,7442905	7445430,7444932,7444448,7443737,7443409	Expressed Protein. Rab-type GTPase distantly related to RabJ-like proteins in mammals and protists.; Member of the RJL family in the Ras superfamily of GTPases [PMID: 14980719]. Cellular function unknown at present.
chr2	7441241	7442902	7441660	7442878	+	MRPS12	Cre02.g144400.t1.1		7441241,7441985,7442503,7442802	7441711,7442174,7442638,7442902	
chr2	7441241	7442722	7441660	7442703	+	MRPS12	Cre02.g144400.t2.1		7441241,7441985,7442503,7442693	7441711,7442174,7442638,7442722	
chr2	7438239	7441040	7438790	7440608	-	FAP1	Cre02.g144450.t1.2		7440525,7440326,7439990,7439762,7439493,7439068,7438239	7441040,7440372,7440080,7439824,7439583,7439189,7438884	Flagellar Associated Protein, found in the flagellar proteome
chr2	7431811	7436759	7432045	7435895	+	Cre02.g144500.t1.1	Cre02.g144500.t1.1		7431811,7432249,7432467,7432781,7433108,7433463,7433758,7434469,7434992	7432110,7432298,7432648,7432873,7433297,7433539,7434322,7434851,7436759	
chr2	7422581	7431665	7423135	7430366	+	Cre02.g144550.t1.2	Cre02.g144550.t1.2		7422581,7423132,7423426,7423655,7424000,7424244,7424767,7425185,7425597,7425964,7426284,7426563,7426969,7427274,7427732,7428328,7428675,7429402,7429979	7422836,7423237,7423496,7423735,7424087,7424325,7424847,7425266,7425678,7426056,7426340,7426597,7427038,7427403,7427799,7428405,7429206,7429712,7431665	
chr2	7406173	7410670	7406699	7410369	-	PTB9	Cre02.g144600.t1.1		7410339,7409994,7409434,7409091,7408801,7408497,7407984,7407666,7407401,7407151,7406173	7410670,7410057,7409841,7409297,7408870,7408644,7408295,7407836,7407520,7407231,7406975	Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB12, PTB5 and PTB4.
chr2	7412045	7413340	7412565	7413283	-	Cre02.g144605.t1.1	Cre02.g144605.t1.1		7412045	7413340	
chr2	7419565	7422130	7420144	7421448	-	Cre02.g144606.t1.1	Cre02.g144606.t1.1		7421306,7420663,7419565	7422130,7420709,7420180	
chr2	7419565	7421570	7420144	7421448	-	Cre02.g144606.t2.1	Cre02.g144606.t2.1		7421306,7420663,7419565	7421570,7420709,7420180	
chr2	7398335	7404490	7399178	7404096	-	PTB12	Cre02.g144650.t1.2		7404096,7403853,7403459,7402887,7402539,7402249,7401945,7401433,7401114,7400844,7400603,7399337,7398335	7404490,7403882,7403522,7403294,7402745,7402318,7402092,7401744,7401284,7400963,7400683,7400218,7399178	Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB9, PTB5 and PTB4.
chr2	7394045	7398280	7394415	7398121	-	PTB5	Cre02.g144700.t1.2		7398121,7397821,7397568,7397046,7396790,7396465,7396238,7395902,7395463,7394999,7394045	7398280,7397842,7397639,7397453,7396909,7396551,7396307,7396049,7395774,7395298,7394754	Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB9, PTB12 and PTB4.
chr2	7392735	7393790	7393017	7393693	-	Cre02.g144734.t1.2	Cre02.g144734.t1.2		7393685,7393415,7392735	7393790,7393496,7393173	
chr2	7387763	7392670	7388452	7392223	-	PTB4	Cre02.g144750.t1.1		7392172,7391948,7391753,7391202,7390825,7390491,7390255,7389958,7389519,7389036,7387763	7392670,7391969,7391824,7391609,7390944,7390577,7390324,7390105,7389830,7389335,7388791	Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB9, PTB12 and PTB5.
chr2	7378351	7384834	7378455	7383733	+	LCI8	Cre02.g144800.t1.1		7378351,7378883,7379032,7379454,7379979,7380401,7380699,7381062,7381415,7381753,7382109,7383075,7383462	7378812,7378940,7379213,7379600,7380051,7380468,7380809,7381184,7381511,7381860,7382233,7383190,7384834	Putative N-acetylglutamate synthase (EC 2.3.1.1) involved in arginine biosynthesis; amino-acid N-acetyltransferase; similar to Arabidopsis (GenBank NP_974701) and Methylococcus capsulatus (GenBank YP_114514) genes; Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr2	7385315	7387590	7385797	7387425	-	Cre02.g144802.t1.1	Cre02.g144802.t1.1		7387256,7386862,7386583,7385315	7387590,7387139,7386780,7386121	
chr2	7375101	7378302	7375237	7377783	+	CGLD26	Cre02.g144850.t1.2		7375101,7375236,7375727,7376128,7376585,7376857,7377289,7377729	7375157,7375309,7375831,7376232,7376713,7377029,7377505,7378302	
chr2	7371211	7375046	7371263	7374760	+	MPA4	Cre02.g144900.t1.1		7371211,7371525,7371949,7372370,7372772,7372982,7374207,7374380,7374630	7371405,7371790,7372083,7372498,7372788,7374039,7374271,7374474,7375046	
chr2	7362491	7370810	7362671	7370011	+	KCN4	Cre02.g144950.t1.1		7362491,7363019,7364032,7364358,7364786,7365100,7365395,7365918,7366364,7366648,7366973,7367283,7367699,7367913,7368168,7368659,7368859,7369069,7369598	7362680,7363496,7364143,7364501,7364903,7365204,7365625,7366073,7366465,7366800,7367059,7367444,7367741,7367994,7368410,7368710,7368909,7369459,7370810	Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity, cyclic nucleotide binding domain at C-terminus
chr2	7359251	7362315	7359378	7361948	+	Cre02.g145000.t1.1	Cre02.g145000.t1.1		7359251,7359702,7359932,7360366,7360713,7361116,7361588	7359499,7359766,7360006,7360464,7360792,7361263,7362315	Putative mitochondrial ribosome-binding factor A
chr2	7355871	7359125	7356407	7359008	-	CMK1	Cre02.g145050.t1.2		7358846,7358658,7358297,7357905,7357494,7357082,7356677,7355871	7359125,7358726,7358410,7357980,7357720,7357245,7356821,7356494	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) (CDPMEK) (ispE) (ychB), chloroplast precursor
chr2	7342789	7354538	7344217	7354003	-	FAP39	Cre02.g145100.t1.1		7353901,7353371,7353151,7352854,7352373,7351904,7351615,7351330,7351004,7350611,7350246,7349864,7349495,7349060,7348761,7348357,7347937,7347506,7347309,7346988,7346713,7346514,7346304,7346101,7345724,7345341,7344972,7342789	7354538,7353485,7353174,7352936,7352570,7352030,7351655,7351404,7351098,7350716,7350348,7350093,7349611,7349266,7348847,7348467,7348143,7347629,7347364,7347131,7346802,7346542,7346363,7346158,7345917,7345455,7345121,7344724	P-type ATPase/cation transporter, found in the flagellar proteome; similar to Ca2+ transporting ATPase; related to cation transporting ATPase; plasma membrane calcium-transporting ATPase 3 (PMCA3) (Plasma membrane calcium pump isoform 3).  Po
chr2	7338459	7342770	7338936	7342359	+	Cre02.g145133.t1.2	Cre02.g145133.t1.2		7338459,7338798,7339048	7338727,7338985,7342770	
chr2	7329909	7337122	7330755	7336416	+	MAM3A	Cre02.g145150.t1.1		7329909,7330276,7330696,7330935,7331276,7331562,7332254,7332515,7332809,7333161,7333336,7333665,7334108,7334810,7335034,7335288	7330202,7330298,7330824,7330964,7331355,7331709,7332329,7332570,7332973,7333201,7333464,7333938,7334647,7334907,7335112,7337122	contains a DUF21 transmembrane domain of unknown function and 2 CBS domains (found in Hemolysins and Mg2+/CO2 transporters CorB CorC); similarity to many Arabidopsis proteins and to yeast Mam3p, involved in mitochondrial biogenesis
chr2	7329909	7337122	7330755	7336416	+	MAM3A	Cre02.g145150.t2.1		7329909,7330696,7330935,7331276,7331562,7332254,7332515,7332809,7333161,7333336,7333665,7334108,7334810,7335034,7335288	7330298,7330824,7330964,7331355,7331709,7332329,7332570,7332973,7333201,7333464,7333938,7334647,7334907,7335112,7337122	contains a DUF21 transmembrane domain of unknown function and 2 CBS domains (found in Hemolysins and Mg2+/CO2 transporters CorB CorC); similarity to many Arabidopsis proteins and to yeast Mam3p, involved in mitochondrial biogenesis
chr2	7324369	7329693	7324469	7329142	+	Cre02.g145200.t1.1	Cre02.g145200.t1.1		7324369,7325084,7325382,7325782,7326390,7326603,7327194,7327584,7328668,7329094	7324814,7325159,7325588,7326112,7326471,7326758,7327403,7328293,7328779,7329693	
chr2	7320319	7323990	7320444	7323506	+	Cre02.g145231.t1.2	Cre02.g145231.t1.2		7320319,7320640,7321293,7321721,7322702,7323191	7320471,7321028,7321386,7321897,7322791,7323990	
chr2	7317963	7320198	7319402	7320093	-	RPS27E2	Cre02.g145250.t1.2		7319955,7319704,7317963	7320198,7319786,7319442	Cytosolic 40S small ribosomal subunit protein S27, isoform B
chr2	7312924	7317868	7313902	7317657	-	Cre02.g145300.t1.2	Cre02.g145300.t1.2		7317618,7317256,7315299,7315014,7314572,7314289,7312924	7317868,7317327,7315435,7315072,7314624,7314354,7314004	
chr2	7304529	7311695	7304845	7311351	+	Cre02.g145350.t1.1	Cre02.g145350.t1.1		7304529,7305220,7305548,7306050,7306262,7306584,7307164,7307731,7308048,7308437,7308887,7309219,7309552,7309931,7310564,7311048	7304975,7305314,7305732,7306123,7306326,7306821,7307368,7307856,7308247,7308570,7309102,7309332,7309750,7310393,7310681,7311695	
chr2	7298496	7301738	7300016	7301559	-	Cre02.g145450.t1.2	Cre02.g145450.t1.2		7301484,7301122,7300880,7300629,7298496	7301738,7301185,7300962,7300646,7300160	
chr2	7294166	7297998	7296012	7297806	-	Cre02.g145451.t1.2	Cre02.g145451.t1.2		7297682,7297060,7296833,7294166	7297998,7297396,7296902,7296615	
chr2	7302200	7304482	7302277	7304285	+	Cre02.g145452.t1.1	Cre02.g145452.t1.1		7302200,7302635,7303635,7304111	7302362,7303132,7303927,7304482	
chr2	7284129	7290371	7284380	7288633	+	PTK24	Cre02.g145500.t1.2		7284129,7285455,7285668,7285984,7286647,7287003,7287247,7287521,7287733,7287911	7284993,7285478,7285783,7286193,7286842,7287070,7287336,7287582,7287776,7290371	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr2	7290639	7294050	7291184	7292171	+	Cre02.g145502.t1.1	Cre02.g145502.t1.1		7290639,7291170,7291649,7292053	7290925,7291449,7291871,7294050	
chr2	7280163	7284028	7280808	7283080	-	Cre02.g145550.t1.2	Cre02.g145550.t1.2		7283873,7283040,7282757,7282263,7281845,7281527,7281245,7280163	7284028,7283601,7282815,7282301,7281957,7281623,7281298,7281057	
chr2	7270719	7278490	7270920	7277691	+	Cre02.g145600.t1.1	Cre02.g145600.t1.1		7270719,7271047,7271298,7272252	7270971,7271124,7271978,7278490	
chr2	7270719	7278490	7270920	7277691	+	Cre02.g145600.t2.1	Cre02.g145600.t2.1		7270719,7271047,7271307,7272252	7270971,7271124,7271978,7278490	
chr2	7278533	7279658	7278781	7279560	-	CSB17	Cre02.g145602.t1.1		7279467,7279019,7278533	7279658,7279129,7278904	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	7264093	7269218	7265286	7268886	-	Cre02.g145628.t1.2	Cre02.g145628.t1.2		7268770,7267507,7267215,7266722,7264093	7269218,7268584,7267382,7267075,7266507	
chr2	7269329	7270570	7269551	7269738	+	Cre02.g145630.t1.1	Cre02.g145630.t1.1		7269329	7270570	
chr2	7254839	7264079	7255695	7262781	+	Cre02.g145650.t1.1	Cre02.g145650.t1.1		7254839,7255495,7256091,7256346,7257292,7257620,7258115,7258581	7255239,7255887,7256168,7257095,7257428,7257968,7258414,7264079	
chr2	7249143	7254358	7249784	7254189	-	AOT1	Cre02.g145700.t1.2		7254161,7253788,7253314,7252979,7252627,7252400,7252138,7251649,7251309,7250981,7250764,7250347,7249143	7254358,7253936,7253404,7253070,7252696,7252454,7252294,7251777,7251422,7251117,7250827,7250513,7250121	belongs to AAAP family of amino acid/auxin permeases; most similar to plant relatives; linked to closely related AOT2; null-allele mutant was isolated (PMID 29743196)
chr2	7242542	7248472	7244050	7248333	-	AOT2	Cre02.g145750.t1.1		7248311,7247490,7247207,7246983,7246806,7246572,7246209,7245907,7245655,7245190,7244964,7244626,7242542	7248472,7247641,7247297,7247074,7246875,7246626,7246365,7246035,7245768,7245326,7245027,7244792,7244372	belongs to AAAP family of amino acid/auxin permeases; most similar to plant relatives; linked to closely related AOT1
chr2	7238593	7241569	7239204	7241524	-	MDY3	Cre02.g145800.t1.2		7241394,7241013,7240608,7240309,7239920,7239555,7238593	7241569,7241171,7240783,7240431,7240117,7239747,7239308	NAD-dependent Malate Dehydrogenase (EC 1.1.1.37), cytosolic; contains full aa sequence of Chlamydomonas cytosolic NAD-MDH (GenBank CAC8841), but ~5 aa longer at the amino terminus; still predicted by Target-P to lack an organelle targeting sequence
chr2	7234917	7238590	7235406	7238115	+	FAP112	Cre02.g145850.t1.2		7234917,7235382,7235855,7236417,7236656,7236960,7237385,7237872	7235198,7235469,7236179,7236526,7236793,7237204,7237688,7238590	Flagellar Associated Protein, found in the flagellar proteome
chr2	7229893	7233065	7230761	7232925	-	Cre02.g145900.t1.2	Cre02.g145900.t1.2		7232823,7231754,7231490,7229893	7233065,7231922,7231585,7231159	
chr2	7233113	7233778	7233463	7233680	-	Cre02.g145902.t1.1	Cre02.g145902.t1.1		7233113	7233778	
chr2	7225199	7228540	7225510	7227870	+	Cre02.g145950.t1.2	Cre02.g145950.t1.2		7225199,7225781,7226055,7226650,7226906,7227183,7227477,7227783	7225603,7225847,7226478,7226761,7227002,7227350,7227634,7228540	
chr2	7219689	7225042	7219921	7224615	+	Cre02.g146000.t1.2	Cre02.g146000.t1.2		7219689,7220481,7220852,7221587,7221972,7222674,7223367,7223717,7224176,7224522	7220154,7220664,7221387,7221701,7222469,7223039,7223540,7224008,7224297,7225042	
chr2	7215449	7219588	7215828	7219540	-	ATO2	Cre02.g146050.t1.2		7219410,7218903,7218488,7218229,7218016,7217743,7217199,7216852,7216548,7216270,7215449	7219588,7218985,7218611,7218318,7218059,7217820,7217518,7217026,7216679,7216349,7216045	EC 2.3.1.9
chr2	7209103	7214778	7211449	7214242	-	Cre02.g146100.t1.1	Cre02.g146100.t1.1		7214152,7213922,7209103	7214778,7213990,7213843	
chr2	7207780	7209048	7208686	7209010	-	Cre02.g146131.t1.2	Cre02.g146131.t1.2		7208958,7207780	7209048,7208817	
chr2	7200399	7207084	7200527	7205945	+	Cre02.g146150.t1.1	Cre02.g146150.t1.1		7200399,7200976,7201251,7201531,7201740,7202483,7205252	7200568,7201103,7201377,7201558,7202275,7205060,7207084	
chr2	7197054	7200258	7197758	7200024	-	Cre02.g146200.t1.1	Cre02.g146200.t1.1		7199970,7199784,7198995,7198721,7198275,7197054	7200258,7199845,7199546,7198769,7198391,7197983	
chr2	7192199	7197023	7192351	7196494	+	NFS1	Cre02.g146250.t1.2		7192199,7192870,7193635,7193973,7194274,7194615,7195019,7195355,7195802,7196371	7192472,7193015,7193709,7194104,7194345,7194788,7195128,7195553,7196044,7197023	Cysteine sulfinate desulfinase/cysteine desulfurase, NifS, homolog to IscS; related to Cysteine desulfurase, mitochondrial precursor
chr2	7176578	7192088	7177734	7191737	-	Cre02.g146300.t1.1	Cre02.g146300.t1.1		7191647,7191148,7190811,7190591,7190224,7189898,7189457,7189203,7188981,7188822,7188511,7188244,7187918,7187670,7187427,7186869,7186589,7186057,7184548,7183962,7183255,7182811,7182503,7182291,7182039,7181745,7181432,7181182,7181057,7180759,7176578	7192088,7191198,7190858,7190689,7190355,7190059,7189636,7189337,7189100,7188857,7188684,7188386,7188053,7187744,7187533,7187262,7186677,7186363,7185948,7184413,7183801,7183126,7182643,7182367,7182173,7181886,7181541,7181282,7181083,7180864,7180569	
chr2	7176578	7192088	7177734	7191737	-	Cre02.g146300.t2.1	Cre02.g146300.t2.1		7191647,7191148,7190811,7190591,7190224,7189898,7189457,7189203,7188981,7188822,7188511,7188244,7187918,7187670,7187427,7186869,7186589,7186057,7184548,7183962,7183255,7182811,7182503,7182291,7182039,7181745,7181432,7181182,7181057,7180759,7176578	7192088,7191198,7190858,7190689,7190355,7190059,7189636,7189337,7189100,7188857,7188684,7188386,7188053,7187744,7187533,7187262,7186677,7186363,7185948,7184413,7183777,7183126,7182643,7182367,7182173,7181886,7181541,7181282,7181083,7180864,7180569	
chr2	7168752	7173051	7168892	7170098	+	CSB2	Cre02.g146400.t1.2		7168752,7169121,7169797,7170023	7168944,7169686,7169910,7173051	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr2	7157619	7168700	7157735	7167263	+	CYG60	Cre02.g146450.t1.1		7157619,7157908,7158309,7158812,7159189,7159669,7165341,7165680,7166005,7166501,7166930	7157796,7158018,7158613,7159060,7159508,7165090,7165523,7165731,7166318,7166731,7168700	
chr2	7147746	7155267	7148091	7153750	+	DYRK1	Cre02.g146500.t1.1		7147746,7148463,7149988,7150512,7150885,7151141,7151475,7151894,7152232	7148142,7149701,7150209,7150622,7151040,7151272,7151592,7152066,7155267	Dual-Specificity Tyrosine-Phosphorylation Regulated Protein Kinase 1
chr2	7144896	7147698	7145067	7146346	+	Cre02.g146550.t1.1	Cre02.g146550.t1.1		7144896,7145481,7145805,7146283	7145312,7145586,7146002,7147698	
chr2	7140521	7144795	7141728	7144624	-	AP4M4	Cre02.g146600.t1.2		7144055,7143221,7142876,7142404,7140521	7144795,7143443,7142958,7142506,7142211	Sequence gap, cDNA supports 33 nucleotides encoding: MVVLDDCNFHE within gap.
chr2	7131546	7139514	7132253	7137050	+	Cre02.g146629.t1.1	Cre02.g146629.t1.1		7131546,7132186,7132726,7133062,7133226,7133394,7136277	7131893,7132470,7132732,7133113,7133269,7136146,7139514	
chr2	7122106	7131487	7122293	7130570	+	SSA11	Cre02.g146650.t1.1		7122106,7122834,7123364,7123687,7124032,7124405,7124978,7125426,7125765,7126082,7126587,7126920,7127175,7128867	7122418,7122931,7123422,7123746,7124169,7124682,7125165,7125549,7125900,7126320,7126701,7126985,7128687,7131487	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr2	7120050	7121984	7120780	7121931	-	Cre02.g146700.t1.2	Cre02.g146700.t1.2		7121912,7121593,7121404,7120050	7121984,7121766,7121481,7121034	
chr2	7116423	7119919	7117115	7119835	-	Cre02.g146750.t1.1	Cre02.g146750.t1.1		7119787,7116423	7119919,7119557	
chr2	7101496	7107584	7101924	7106581	+	Cre02.g146850.t1.2	Cre02.g146850.t1.2		7101496,7102541,7102978,7103293,7103683,7104344,7105264,7105638,7105899	7102303,7102617,7103067,7103496,7104111,7105141,7105428,7105687,7107584	
chr2	7107986	7116307	7108333	7114603	+	Cre02.g146851.t1.1	Cre02.g146851.t1.1		7107986,7108786,7109087,7109637,7113461,7113724,7114103,7114489	7108572,7108891,7109404,7113319,7113501,7113887,7114303,7116307	
chr2	7094010	7101365	7094296	7101316	-	OPR14	Cre02.g146900.t1.1		7100491,7099683,7098634,7098316,7097825,7097592,7097237,7096872,7096609,7096155,7095793,7095464,7095113,7094825,7094010	7101365,7100082,7099348,7098349,7098062,7097647,7097446,7097048,7096668,7096292,7095975,7095624,7095245,7094901,7094492	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr2	7087556	7093987	7087820	7093793	+	DBR1	Cre02.g146950.t1.1		7087556,7088406,7088829,7089574,7089851,7090226,7091410,7091844,7092393,7092812,7093166,7093530	7087838,7088522,7088881,7089638,7089950,7090355,7091517,7092215,7092531,7092990,7093337,7093987	RNA lariat debranching enzyme. This is the first step in the degradation of lariat introns produced during splicing. The enzyme is also involved in discarding unproductive lariat intron-exon2 intermediates if the second splicing step is blocked, and in the processing of intron-encoded snoRNAs. Also required for efficient Ty1 transposition in S. cerevisiae
chr2	7084200	7087445	7084802	7087379	-	Cre02.g147000.t1.1	Cre02.g147000.t1.1		7086991,7086741,7086377,7085955,7085593,7085250,7084200	7087445,7086811,7086501,7086036,7085667,7085342,7084970	
chr2	7081451	7084149	7081504	7083598	+	Cre02.g147050.t1.2	Cre02.g147050.t1.2		7081451,7081659,7082189,7082510,7082774,7083075,7083258,7083564	7081588,7081710,7082244,7082608,7082830,7083089,7083349,7084149	Similar to FAP265; Similar to tubulin polymerization-promoting proteins in mouse
chr2	7078740	7081276	7078829	7080872	+	FAP265	Cre02.g147100.t1.1		7078740,7079036,7079224,7079426,7079663,7080075,7080607,7080838	7078889,7079068,7079295,7079472,7079771,7080089,7080692,7081276	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr2	7065836	7078687	7066555	7078348	+	Cre02.g147150.t1.1	Cre02.g147150.t1.1		7065836,7066257,7067250,7067592,7067786,7068405,7068903,7069269,7069627,7070076,7070852,7071371,7073809,7075017,7076299	7066091,7067121,7067317,7067659,7068193,7068698,7069055,7069350,7069822,7070550,7071178,7073610,7074861,7076064,7078687	null-allele mutant was isolated (PMID 29743196)
chr2	7051965	7055391	7053917	7055225	-	Cre02.g147300.t1.1	Cre02.g147300.t1.1		7055156,7054931,7051965	7055391,7055059,7054484	
chr2	7056278	7059555	7057542	7058849	-	Cre02.g147301.t1.1	Cre02.g147301.t1.1		7059037,7057880,7056278	7059555,7058943,7057704	
chr2	7059845	7065665	7060801	7065407	-	Cre02.g147302.t1.1	Cre02.g147302.t1.1		7065272,7064660,7063944,7063588,7063334,7062872,7062082,7061265,7059845	7065665,7064810,7064047,7063730,7063387,7063037,7062279,7061441,7060951	null-allele passenger mutation was isolated (PMID 29743196)
chr2	7045873	7050975	7046963	7050719	-	Cre02.g147350.t1.2	Cre02.g147350.t1.2		7050425,7049201,7048599,7045873	7050975,7050151,7048943,7048448	
chr2	7039899	7045691	7040089	7044142	+	Cre02.g147450.t1.1	Cre02.g147450.t1.1		7039899,7040622,7040901,7041158,7041540,7041807,7042349,7042577,7043006,7043413	7040145,7040748,7040971,7041273,7041641,7042027,7042408,7042797,7043207,7045691	
chr2	7036270	7039795	7037277	7039468	-	Cre02.g147500.t1.2	Cre02.g147500.t1.2		7039235,7038836,7038510,7038208,7037803,7036270	7039795,7038929,7038599,7038306,7037951,7037476	
chr2	7032696	7036267	7032802	7036115	+	Cre02.g147550.t1.1	Cre02.g147550.t1.1		7032696,7033183,7033857,7034557,7035356,7035944	7033067,7033611,7034161,7035003,7035466,7036267	
chr2	7025316	7032643	7025728	7032400	+	Cre02.g147600.t1.1	Cre02.g147600.t1.1		7025316,7031017,7031383,7031855,7032145	7030725,7031203,7031589,7031941,7032643	
chr2	7021606	7025187	7021858	7024704	+	MPI1	Cre02.g147650.t1.2		7021606,7022045,7022282,7022679,7023205,7023605,7024107	7021921,7022109,7022420,7022762,7023411,7023802,7025187	editing needed -- both 5' and 3
chr2	7015080	7020645	7016002	7020412	-	Cre02.g147700.t1.2	Cre02.g147700.t1.2		7019778,7019323,7019026,7018710,7018436,7018146,7017676,7017377,7017006,7016746,7016428,7015080	7020645,7019469,7019097,7018825,7018524,7018170,7017840,7017451,7017041,7016832,7016520,7016260	
chr2	7010196	7015077	7010601	7015044	+	FAP209	Cre02.g147750.t1.2		7010196,7010859,7011726,7012398,7012916,7013452,7014069	7010701,7011561,7012194,7012718,7013264,7013927,7015077	Flagellar Associated Protein, found in the flagellar proteome
chr2	7004146	7010044	7004265	7009252	+	SEC14	Cre02.g147800.t1.2		7004146,7004935,7005362,7005706,7006055,7006359,7006684,7007036,7007374,7007821,7008227,7009063	7004373,7005007,7005480,7005777,7006137,7006465,7006751,7007152,7007505,7008002,7008644,7010044	similar to SEC14 cytosolic factor, necessary for vesicle budding from the Golgi complex (PMID: 9461221); there are two other highly similar proteins in Chlamydomonas (ID:105305 and 169226)
chr2	6997352	7004085	6997808	7003299	+	HSLU2	Cre02.g147850.t1.2		6997352,6998813,6999243,6999751,7000082,7000516,7001094,7001471,7002315,7002716,7003211	6998483,6998920,6999317,6999845,7000209,7000811,7001213,7001674,7002491,7002840,7004085	Similar to eubacterial ClpY (HslU), ATP-dependent subunit of the HslUV protease; probably directed to the mitochondrion; null-allele mutant was isolated (PMID 29743196)
chr2	6989611	6997254	6990482	6997169	-	PYK5	Cre02.g147900.t1.1		6997112,6996937,6996783,6996573,6995976,6995679,6994671,6994290,6993944,6993238,6992415,6991402,6990881,6989611	6997254,6997044,6996815,6996682,6996177,6995744,6994828,6994428,6994031,6993602,6992543,6991560,6991014,6990555	pyruvate kinase (PK) [EC 2.7.1.40]
chr2	6989611	6997254	6990482	6997169	-	PYK5	Cre02.g147900.t2.1		6997112,6996937,6996783,6996573,6995976,6995679,6994671,6994290,6993944,6993238,6992430,6991402,6990881,6989611	6997254,6997044,6996815,6996682,6996177,6995744,6994828,6994428,6994031,6993602,6992543,6991560,6991014,6990555	pyruvate kinase (PK) [EC 2.7.1.40]
chr2	6989611	6997254	6990482	6997169	-	PYK5	Cre02.g147900.t3.1		6997112,6996937,6996783,6996573,6995976,6995679,6994671,6994290,6993944,6993238,6992430,6991402,6990881,6989611	6997254,6997044,6996815,6996682,6996177,6995744,6994828,6994428,6994031,6993602,6992543,6991560,6991014,6990552	pyruvate kinase (PK) [EC 2.7.1.40]
chr2	6989611	6997254	6990482	6997169	-	PYK5	Cre02.g147900.t4.1		6997112,6996937,6996783,6996573,6995976,6995679,6994671,6994290,6993944,6993238,6991402,6990881,6989611	6997254,6997044,6996815,6996682,6996177,6995744,6994828,6994428,6994031,6993602,6991560,6991014,6990555	pyruvate kinase (PK) [EC 2.7.1.40]
chr3	11120	13955	13728	13906	-	Cre03.g143687.t1.1	Cre03.g143687.t1.1		11120	13955	
chr3	19520	21715	20538	21564	-	Cre03.g143707.t1.1	Cre03.g143707.t1.1		21517,20790,19520	21715,20998,20612	
chr3	30986	34441	31308	33724	+	CSU2	Cre03.g143727.t1.1		30986,31814,32385,32610,33719	31698,32296,32462,33360,34441	probably tranposon-derived
chr3	40860	53805	40892	53352	-	Cre03.g143747.t1.1	Cre03.g143747.t1.1		53266,53161,52977,52826,52598,51851,51487,51327,50999,50768,50301,50019,49742,49441,48654,48374,48072,47238,46983,46708,46373,45964,45696,45055,44875,44439,44188,43853,43691,43522,43021,42682,42479,41841,41393,40947,40860	53805,53206,53095,52919,52752,52538,51788,51428,51257,50918,50710,50238,49962,49666,49372,48589,48302,48006,47176,46919,46643,46312,45904,45633,44996,44802,44378,44129,43788,43614,43462,42964,42611,42418,41771,41331,40892	
chr3	40860	49915	40892	49793	-	Cre03.g143767.t1.1	Cre03.g143767.t1.1		49742,49441,48654,48374,48072,47238,46983,46708,46373,45964,45696,45055,44875,44439,44188,43853,43691,43522,43021,42682,42479,41841,41393,40947,40860	49915,49666,49372,48589,48302,48006,47176,46919,46643,46312,45904,45633,44996,44802,44378,44129,43788,43614,43462,42964,42611,42418,41771,41331,40892	
chr3	60326	65657	60852	64391	+	Cre03.g143787.t1.1	Cre03.g143787.t1.1		60326,60778,63144,63890	60481,63012,63668,65657	
chr3	71876	73767	72146	73376	+	Cre03.g143807.t1.1	Cre03.g143807.t1.1		71876,72517,72906	72240,72657,73767	
chr3	73770	83525	73881	83283	-	FBB7	Cre03.g143827.t1.1		83218,82947,82819,82488,81921,81611,81200,80984,80631,80333,80149,79618,79196,78906,78634,78316,77885,77421,76984,76762,76508,76260,75917,75434,74259,73770	83525,83031,82848,82601,82024,81689,81358,81076,80851,80492,80202,80037,79434,79006,78755,78503,78173,77741,77230,76829,76654,76316,76087,75706,75289,74164	Conserved protein found in ciliated organisms, unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr3	83626	86089	83693	85079	+	Cre03.g143847.t1.1	Cre03.g143847.t1.1		83626,84190,84528	83733,84282,86089	
chr3	83626	86089	84230	85079	+	Cre03.g143847.t2.1	Cre03.g143847.t2.1		83626,84190,84528	84051,84282,86089	
chr3	86366	89597	86524	88923	+	Cre03.g143867.t1.1	Cre03.g143867.t1.1		86366,86714,87423,87668,88044,88418	86581,87205,87515,87892,88207,89597	
chr3	89600	94266	90462	94028	-	Cre03.g143887.t1.1	Cre03.g143887.t1.1		93641,93321,92921,92469,92154,91808,90852,89600	94266,93393,93099,92556,92284,92003,91413,90634	
chr3	94376	98274	94624	97821	+	Cre03.g143907.t1.1	Cre03.g143907.t1.1		94376,94924,95471,95852,96119,96550,96939,97680	94681,95265,95615,95942,96221,96774,97424,98274	
chr3	98376	103407	98500	102280	+	Cre03.g143927.t1.1	Cre03.g143927.t1.1		98376,98736,99563,99809,100271,100544,101737,102160	98544,99439,99660,99916,100318,100630,101862,103407	
chr3	103590	106695	104623	106621	-	Cre03.g143947.t1.1	Cre03.g143947.t1.1		106501,106119,105828,105096,103590	106695,106250,105959,105410,104851	
chr3	106793	108580	106898	107899	+	Cre03.g143967.t1.1	Cre03.g143967.t1.1		106793,107162,107470,107743	106947,107250,107574,108580	
chr3	108600	112315	110460	111899	-	Cre03.g143987.t1.1	Cre03.g143987.t1.1		111831,111465,111099,108600	112315,111570,111345,110924	
chr3	112790	132555	113744	130789	-	Cre03.g144011.t1.1	Cre03.g144011.t1.1		132540,132295,129133,128742,128445,127882,127466,127047,126581,126183,125769,124333,123566,122549,122204,121362,121091,120448,120185,119969,119713,119237,118834,118190,112790	132555,132408,131381,128960,128508,128309,127653,127252,126866,126332,126006,125557,124094,123350,122316,122061,121151,120524,120229,119980,119770,119487,118935,118606,118013	
chr3	112790	131875	113744	130789	-	Cre03.g144011.t2.1	Cre03.g144011.t2.1		131750,129133,128742,128454,127882,127466,127047,126581,126183,125769,124333,123566,122549,122204,121362,121091,120448,120185,119969,119713,119237,118834,118190,112790	131875,131381,128960,128508,128309,127653,127252,126866,126332,126006,125557,124094,123350,122316,122061,121151,120524,120229,119980,119770,119487,118935,118606,118013	
chr3	112790	132555	113744	130789	-	Cre03.g144011.t3.1	Cre03.g144011.t3.1		132540,132295,129133,128742,128454,127882,127466,127047,126581,126183,125769,124333,123566,122549,122204,121362,121091,120448,120185,119969,119713,119237,118834,118190,112790	132555,132408,131381,128960,128508,128309,127653,127252,126866,126332,126006,125557,124094,123350,122316,122061,121151,120524,120229,119980,119770,119487,118935,118606,118013	
chr3	112790	132555	113744	130789	-	Cre03.g144011.t4.1	Cre03.g144011.t4.1		132540,132295,129133,128742,128454,127882,127466,127047,126581,126183,125769,124333,123566,122549,122204,121362,121091,120448,120185,119713,119237,118834,118190,112790	132555,132408,131381,128960,128508,128309,127653,127252,126866,126332,126006,125557,124094,123350,122316,122061,121151,120524,120229,119770,119487,118935,118606,118013	
chr3	132630	135785	133013	135630	-	Cre03.g144031.t1.1	Cre03.g144031.t1.1		135575,135344,134982,134396,134143,133526,132630	135785,135470,135051,134782,134220,133954,133343	
chr3	135886	138217	136004	137525	+	Cre03.g144064.t1.1	Cre03.g144064.t1.1		135886,136417,136742,137034,137414	136142,136509,136792,137144,138217	
chr3	138388	143595	139229	142936	-	RBL7	Cre03.g144084.t1.1		143406,140504,140155,139653,138388	143595,143172,140370,139938,139466	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); the long N-terminal extension of 600 AA shows no homology and could result from fusion with an upstream gene
chr3	144246	147437	144563	146616	+	Cre03.g144104.t1.1	Cre03.g144104.t1.1		144246,144938,146596	144632,146495,147437	
chr3	147486	151117	147624	151040	+	Cre03.g144124.t1.1	Cre03.g144124.t1.1		147486,148868,149249,150373,150692	148707,148969,149989,150495,151117	
chr3	151128	156395	152321	156152	-	Cre03.g144144.t1.1	Cre03.g144144.t1.1		156124,155460,154954,154315,153948,153422,153187,152816,151128	156395,155501,155192,154745,154050,153685,153270,152926,152585	
chr3	151128	156395	152321	156152	-	Cre03.g144144.t2.1	Cre03.g144144.t2.1		156136,155460,154954,154315,153948,153422,153187,152816,151128	156395,155501,155192,154745,154050,153685,153270,152926,152585	
chr3	158131	162215	158498	162114	-	RSEP2	Cre03.g144164.t1.1		161756,161289,160794,160504,159697,159176,158131	162215,161455,160925,160572,159861,159444,158853	Intramembrane metalloprotease related to site-2 protease; contains M5 domain, with HExxH motif embedded in transmembrane helix; homologous to bacterial RseP/YaeL/PsoIVFB involved in transmembrane signaling; could be organelle-targeted, but N-terminal extension is well conserved with Volvox
chr3	162396	164197	162464	163523	+	Cre03.g144184.t1.1	Cre03.g144184.t1.1		162396,162861,163171,163434	162643,162998,163277,164197	
chr3	164436	166565	165320	166433	-	Cre03.g144204.t1.1	Cre03.g144204.t1.1		166208,165867,164436	166565,166031,165578	
chr3	166666	169947	166750	169592	+	Cre03.g144224.t1.1	Cre03.g144224.t1.1		166666,167162,167664,168451,168971,169451	166979,167379,168211,168806,169254,169947	
chr3	172176	180270	173299	179909	+	Cre03.g144244.t1.1	Cre03.g144244.t1.1		172176,172772,172878,173059,173226,173714,173940,175363,175775,176561,176922,177789,178622,179603	172656,172804,172973,173118,173549,173824,175219,175622,176441,176740,177613,178503,179461,180270	
chr3	181770	193575	183794	193200	-	Cre03.g144264.t1.1	Cre03.g144264.t1.1		193177,193022,192631,192412,191299,190688,190191,189510,188317,187841,187166,186704,186520,186342,186021,185693,185229,184973,181770	193575,193064,192716,192440,191374,190910,190482,189972,189236,188107,187626,186946,186576,186404,186113,185773,185284,185012,183869	
chr3	197896	202887	198197	202042	+	CGL110	Cre03.g144284.t1.1		197896,198328,198744,199509,199777,200061,200381,200656,201057,201442	198246,198428,199184,199562,199846,200131,200513,200807,201218,202887	
chr3	202900	204875	203293	204604	-	Cre03.g144304.t1.1	Cre03.g144304.t1.1		204250,202900	204875,204154	
chr3	205436	213698	205785	212991	+	Cre03.g144324.t1.1	Cre03.g144324.t1.1		205436,206129,206790,207239,207615,207966,208441,208821,209118,209557,209884,210334,210820,211382,211706,212438,212855	205861,206246,206952,207436,207741,208132,208614,208893,209267,209682,209960,210486,211033,211455,212198,212579,213698	
chr3	213700	224555	214753	224353	-	Cre03.g144344.t1.1	Cre03.g144344.t1.1		224289,223582,221538,221220,220852,220623,220209,219786,219479,219142,218772,218243,217942,216978,216710,216339,216050,215610,215145,213700	224555,223730,221928,221333,220935,220670,220516,219912,219538,219356,218888,218528,218025,217774,216784,216583,216198,215925,215361,215020	
chr3	213700	222025	214753	221926	-	Cre03.g144344.t2.1	Cre03.g144344.t2.1		221538,221220,220852,220623,220209,219786,219479,219142,218772,218243,217942,216978,216710,216339,216050,215610,215145,213700	222025,221333,220935,220670,220516,219912,219538,219356,218888,218528,218025,217774,216784,216583,216198,215925,215361,215020	
chr3	222080	224555	222941	224353	-	Cre03.g144344.t3.1	Cre03.g144344.t3.1		224289,223582,222080	224555,223730,222977	
chr3	225156	230976	225685	228399	+	Cre03.g144364.t1.1	Cre03.g144364.t1.1		225156,225611,226086,226392,226824	225432,225850,226195,226635,230976	
chr3	231168	233645	231577	233539	-	Cre03.g144384.t1.1	Cre03.g144384.t1.1		233437,232958,232188,231807,231168	233645,233030,232217,231850,231598	
chr3	233756	240307	234023	239869	+	Cre03.g144404.t1.1	Cre03.g144404.t1.1		233756,234621,234891,235208,235725,236120,236511,237192,238708,239332	234433,234679,235018,235562,235906,236342,237015,237594,238980,240307	
chr3	240626	252697	240741	250311	+	Cre03.g144424.t1.1	Cre03.g144424.t1.1		240626,243578,244053,244649,245326,246878	243387,243732,244143,245210,246643,252697	
chr3	252776	254540	252926	254472	+	Cre03.g144444.t1.1	Cre03.g144444.t1.1		252776,253112,253651,254056	253049,253249,253840,254540	
chr3	254796	265377	255707	264128	+	Cre03.g144464.t1.1	Cre03.g144464.t1.1		254796,255562,259432,259778,260818,261025,261424,261676,261886,262116,262607,262916	255152,259360,259589,260562,260847,261213,261495,261735,261951,262382,262753,265377	null-allele mutant was isolated (PMID 29743196)
chr3	267426	273277	267621	272786	+	Cre03.g144484.t1.1	Cre03.g144484.t1.1		267426,268024,268480,268921,269233,269693,269975,270360,270742,271057,271344,271674,272155,272639	267777,268105,268544,269010,269393,269780,270134,270560,270833,271137,271505,271769,272283,273277	
chr3	273326	274791	273439	274110	+	Cre03.g144504.t1.1	Cre03.g144504.t1.1		273326,273981	273589,274791	
chr3	275080	282435	275870	281963	-	Cre03.g144524.t1.1	Cre03.g144524.t1.1		282086,281798,281367,281026,280718,279312,279051,277964,277401,275080	282435,281966,281469,281169,280885,280345,279139,278904,277687,276980	
chr3	282500	289275	282902	289033	-	Cre03.g144544.t1.1	Cre03.g144544.t1.1		289027,288749,288431,287637,287235,286637,286076,285519,285012,282500	289275,288841,288507,288093,287320,286910,286341,285632,285261,284759	
chr3	290354	295831	290998	295733	-	MMP13	Cre03.g144564.t1.1		295666,295144,294656,294062,293585,292969,292712,292337,291917,291475,290354	295831,295269,294907,294312,293824,293264,292809,292527,292117,291764,291257	Matrix metalloproteinase belonging to the M11 peptidase family
chr3	295961	298833	297304	298297	-	Cre03.g144584.t1.1	Cre03.g144584.t1.1		298258,295961	298833,298093	
chr3	298976	311137	299154	310683	+	Cre03.g144607.t1.1	Cre03.g144607.t1.1		298976,299652,299968,300302,302089,302434,302719,303171,303689,304077,304480,304946,305292,306273,307060,307691,308073,308744,309114,309522,310031	299259,299792,300127,301916,302158,302537,302794,303397,303848,304157,304677,305076,305812,306515,307325,307810,308531,308884,309276,309690,311137	
chr3	311186	314142	311341	312743	+	CGS1	Cre03.g144627.t1.1		311186	314142	O-succinylhomoserine (thiol)-lyase; Homoserine O-transsuccinylase; O-succinylhomoserine synthase; Cystathionine synthetase.  METB homolog, possibly localized to chloroplast.  Catalyzes second step of methionine from homoserin
chr3	315241	318725	316462	318654	-	Cre03.g144647.t1.1	Cre03.g144647.t1.1		318539,317959,317184,316791,315241	318725,318208,317261,316865,316505	
chr3	318846	320305	318904	319640	+	ClpT4	Cre03.g144667.t1.1		318846	320305	Homologue of plant ClpT (formerly called ClpS) proteins associated with ClpP complex (PMID: 14593120); has similarity to the N-terminal domain of ClpA chaperone that binds the ClpS adaptator
chr3	320560	329885	321602	329261	-	Cre03.g144687.t1.1	Cre03.g144687.t1.1		329383,329244,328865,328536,327957,327701,327378,327163,326871,326361,325703,324898,323054,320560	329885,329272,328907,328796,328115,327725,327445,327231,326947,326480,325958,325098,323838,322641	
chr3	329990	337085	330371	336809	-	Cre03.g144707.t1.1	Cre03.g144707.t1.1		336736,336290,335261,334892,334518,334111,333577,333141,332755,332406,331944,331580,330855,329990	337085,336589,335367,334957,334590,334325,333718,333358,332856,332476,332111,331727,331199,330581	
chr3	338126	341525	338531	340985	-	RBL2	Cre03.g144727.t1.1		340673,340162,339670,339177,338126	341525,340411,339767,339360,338806	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); linked to RBL1; CDS is truncated by 54 codons, add :MTSTASSVRDHLESLASDAYSAVSDAAQRVASSLGLQGHQTVLERKLRPPIDRG
chr3	341706	348811	342156	347370	+	Cre03.g144747.t1.1	Cre03.g144747.t1.1		341706,342813,343286,344308,345119,346641	342563,343051,344098,344960,346444,348811	
chr3	349412	352183	349533	351717	+	Cre03.g144767.t1.1	Cre03.g144767.t1.1		349412,350169,350575,350910,351583	349812,350279,350714,351265,352183	
chr3	352189	356391	353298	355856	-	Cre03.g144787.t1.1	Cre03.g144787.t1.1		355773,355555,355332,355116,353601,352189	356391,355612,355430,355151,353654,353388	
chr3	356536	361981	357737	361790	-	MAS1	Cre03.g144807.t1.1		361611,361194,360838,360535,360199,359857,359517,359222,358897,358596,358196,356536	361981,361369,360982,360705,360341,360010,359598,359319,359035,358690,358310,357881	Malate synthase (EC 2.3.3.9); identical to cDNA sequence (AAP75564); PMID: 19214701
chr3	362036	364121	362629	364007	-	Cre03.g144827.t1.1	Cre03.g144827.t1.1		363994,363495,363215,362036	364121,363661,363280,362755	
chr3	364242	380653	364599	379182	+	PYK4	Cre03.g144847.t1.1		364242,365173,365486,365820,366387,366660,366868,367115,367384,367649,367919,368269,368578,368861,369207,369498,369678,369911,370143,370392,370589,370825,371092,371346,371572,371840,372073,372378,372631,372800,373122,373605,373833,374054,374222,374464,374841,375222,375498,376490,376938,377251,377676,377956,378206,378565,378949	364959,365331,365653,366180,366490,366738,366953,367301,367511,367751,368126,368384,368687,369025,369308,369560,369789,370032,370220,370441,370688,370941,371186,371457,371679,371953,372195,372545,372687,372933,373461,373692,373953,374115,374322,374635,375056,375367,376328,376707,377080,377534,377847,378064,378359,378757,380653	Pyruvate kinase (PK) [EC 2.7.1.40]; catalyses the final step in glycolysis, which is the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP. (This gene model is one of three possible variants from this genome regi
chr3	380702	385372	381026	384972	+	Cre03.g144867.t1.1	Cre03.g144867.t1.1		380702,381478,382231,382745,383331,384633	381323,381986,382513,382837,383462,385372	
chr3	385796	406571	386512	406304	-	Cre03.g144887.t1.1	Cre03.g144887.t1.1		406183,405554,404073,403584,403273,402829,402359,401979,401069,400364,399798,399262,398626,398307,397877,397358,396836,396213,395778,394817,394231,393946,393565,393281,392887,392001,391585,391206,390748,390425,390138,389658,389390,388682,388092,387619,387200,386761,385796	406571,405938,405320,403731,403346,402943,402618,402072,401701,400804,399935,399519,399003,398426,398101,397534,396977,396505,395912,395476,394443,394044,393642,393391,393006,392581,391702,391398,390958,390488,390215,389728,389438,388967,388263,387724,387313,386951,386537	
chr3	408182	411932	408296	411556	+	Cre03.g144907.t1.1	Cre03.g144907.t1.1		408182,409039,409619,410144,410423,410972,411348	408671,409191,409765,410218,410812,411051,411932	
chr3	413426	415031	413875	414822	-	Cre03.g144927.t1.1	Cre03.g144927.t1.1		414649,414130,413426	415031,414147,413936	
chr3	415122	420981	416963	420597	-	Cre03.g144947.t1.1	Cre03.g144947.t1.1		420877,420468,420018,419561,415122	420981,420708,420223,419633,419321	
chr3	422856	431261	424078	431177	-	Cre03.g144967.t1.1	Cre03.g144967.t1.1		430970,430254,429631,428925,428561,428077,427614,427183,426509,426008,425591,425231,424987,424554,422856	431261,430349,429687,429029,428647,428209,427699,427284,426619,426110,425732,425385,425102,424722,424275	
chr3	431316	443811	433984	443723	-	Cre03.g144987.t1.1	Cre03.g144987.t1.1		443564,443398,442490,441699,440989,440723,440365,439566,439189,438484,438124,437694,437430,436912,436470,436105,434961,434561,431316	443811,443498,442847,442277,441451,440793,440535,439874,439257,438894,438307,437815,437507,437214,436576,436195,435821,434815,434371	
chr3	443972	446563	444127	445572	+	Cre03.g145007.t1.1	Cre03.g145007.t1.1		443972,445266,445369,445572	444597,445276,445438,446563	
chr3	449102	454123	449323	454054	+	Cre03.g145027.t1.1	Cre03.g145027.t1.1		449102,450136,450313,450604,451003,451958,452246,452883,453272,453613,454006	449799,450175,450400,450654,451252,452015,452358,453015,453390,453673,454123	
chr3	454172	458993	454255	458084	+	Cre03.g145047.t1.1	Cre03.g145047.t1.1		454172,456476	455473,458993	
chr3	459042	460673	459067	460024	+	Cre03.g145067.t1.1	Cre03.g145067.t1.1		459042,459246,459612	459100,459367,460673	
chr3	460732	465188	460790	464576	+	MTP1	Cre03.g145087.t1.1		460732,461078,461302,461744,462059,462583,462758,463582,464137,464516	460940,461160,461537,461827,462401,462625,463351,463725,464322,465188	Putative Zn transporter, CDF family, related to plant zinc transporters, related to the plant MTP1, PMID: 15710683
chr3	465196	471563	465758	471326	-	Cre03.g145107.t1.1	Cre03.g145107.t1.1		471299,471131,470679,470413,470096,469875,469599,469027,468659,468345,468138,467638,467143,466777,466493,466247,465196	471563,471229,470906,470466,470250,469968,469703,469407,468784,468440,468218,467958,467430,466960,466590,466333,466091	
chr3	471712	489850	471865	489443	+	DHC13	Cre03.g145127.t1.1		471712,471964,472147,472538,474431,474911,475398,476485,476848,477127,477676,478701,479012,480302,482400,483602,483918,484213,485064,485449,486294,486596	471868,472081,472268,474246,474766,475209,476232,476653,476982,477357,478530,478814,480002,481965,483407,483772,484078,484887,485290,486143,486440,489850	contains unusual N-terminal domain with IG and kelch repeats
chr3	490320	493511	490959	493282	-	Cre03.g145147.t1.1	Cre03.g145147.t1.1		493499,493200,492878,492502,492257,491903,491635,490320	493511,493317,492921,492654,492287,492063,491732,491512	Transient receptor potential channel in TRPV subfamily
chr3	493622	496893	493931	495176	+	Cre03.g145167.t1.1	Cre03.g145167.t1.1		493622,495165	494850,496893	
chr3	496896	505591	497114	505203	-	Cre03.g145187.t1.1	Cre03.g145187.t1.1		504369,502585,501966,501378,500953,500391,499979,498891,498539,498035,497508,496896	505591,504126,502269,501810,501118,500740,500231,499841,498697,498247,497815,497178	May contain additional coding sequence in intronic N-island PMID: 27175017
chr3	505676	508151	506363	507962	-	CPLD33	Cre03.g145207.t1.1		507832,507448,507000,505676	508151,507685,507093,506582	
chr3	508352	513623	508531	512832	+	Cre03.g145227.t1.1	Cre03.g145227.t1.1		508352,508784,509278,509626,510168,510593,511163,511551,511944,512682	508588,508852,509355,509775,510424,510950,511215,511715,512430,513623	
chr3	513782	517294	514032	516875	+	TEF11	Cre03.g145247.t1.1		513782,514240,514464,514717,515190,515624,515991,516253,516565,516854	514154,514264,514517,514830,515242,515712,516079,516285,516636,517294	S-isoprenylcysteine O-methyltransferase related, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr3	517377	522209	518793	522176	-	Cre03.g145267.t1.1	Cre03.g145267.t1.1		521993,521866,521442,520994,520616,520119,519707,519271,517377	522209,521919,521684,521159,520763,520238,519935,519459,519003	
chr3	524415	528084	525336	527570	-	Cre03.g145287.t1.1	Cre03.g145287.t1.1		526109,524415	528084,525732	
chr3	530802	532003	530894	531644	+	Cre03.g145307.t1.1	Cre03.g145307.t1.1		530802,531644	531364,532003	
chr3	530802	532003	530894	531610	+	Cre03.g145307.t2.1	Cre03.g145307.t2.1		530802,531610	531364,532003	
chr3	532292	533297	532390	532619	+	Cre03.g145327.t1.1	Cre03.g145327.t1.1		532292	533297	
chr3	533462	539173	533560	537302	+	Cre03.g145347.t1.1	Cre03.g145347.t1.1		533462,534055,534557,535567,535825,536240,536620,536994	533827,534238,535417,535650,536033,536429,536763,539173	
chr3	540612	544267	541074	543913	-	Cre03.g145367.t1.1	Cre03.g145367.t1.1		543844,543221,542986,542634,542406,542072,541878,541579,541352,540612	544267,543346,543081,542774,542442,542148,541905,541718,541408,541206	
chr3	544332	548237	545007	548070	-	FAP239	Cre03.g145387.t1.1		547959,547599,547342,547063,546628,545940,545438,544332	548237,547633,547459,547194,546825,546438,545727,545211	
chr3	548408	558689	548787	557454	+	Cre03.g145407.t1.1	Cre03.g145407.t1.1		548408,548732,549019,549353,549685,550331,550585,551056,551474,551987,553001,553260,553599,553897,554754	548556,548864,549205,549462,549868,550432,550934,551326,551842,552868,553122,553464,553763,554592,558689	
chr3	559036	561461	559573	561352	-	Cre03.g145427.t1.1	Cre03.g145427.t1.1		560785,560401,560109,559760,559036	561461,560590,560182,559831,559594	
chr3	561512	569197	562323	569115	-	Cre03.g145447.t1.1	Cre03.g145447.t1.1		568968,568031,567808,567505,566651,565605,565121,564890,564597,564147,563707,563241,561512	569197,568830,567893,567661,567061,566526,565401,564951,564692,564367,563784,563489,563088	
chr3	569849	572587	570735	571852	-	Cre03.g145467.t1.1	Cre03.g145467.t1.1		572189,569849	572587,571961	
chr3	572752	578557	573727	578383	-	Cre03.g145487.t1.1	Cre03.g145487.t1.1		578275,578083,577649,577295,576842,576344,576056,575633,575353,574283,574054,572752	578557,578130,577942,577362,576941,576481,576085,575755,575403,575182,574161,573880	
chr3	578758	581913	579056	581215	+	Cre03.g145507.t1.1	Cre03.g145507.t1.1		578758,579624,580014,580294,580750,581176	579156,579732,580092,580537,580964,581913	
chr3	582332	587987	583530	587687	-	RBL1	Cre03.g145527.t1.1		587599,587422,586517,586076,585525,585232,584769,584393,583992,582332	587987,587476,586690,586149,585608,585336,584962,584527,584102,583713	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); linked to RBL2; possibly organelle-targeted; probably inactive,as it lacks some of the catalytic residues
chr3	588121	591005	588323	590247	+	CBR1	Cre03.g145547.t1.1		588121,588584,589113,589437,589790,590140	588422,588877,589203,589570,589931,591005	
chr3	591012	593687	591382	593563	-	CGL18	Cre03.g145567.t1.1		593560,593147,592766,592392,592198,591980,591774,591012	593687,593477,593010,592477,592225,592028,591892,591523	
chr3	593853	596309	593968	595849	+	CPLD1	Cre03.g145587.t1.1		593853,594116,594394,594697,594909,595196,595408,595612	594001,594197,594473,594716,594996,595229,595430,596309	
chr3	596312	599257	597163	599132	-	BET3	Cre03.g145607.t1.1		599078,598890,598628,598095,597712,596312	599257,598987,598730,598166,597819,597286	Expressed Protein. Conserved protein similar to BET3, a component of the TRAPP complex involved in vesicle trafficking between the ER and Golgi.
chr3	599358	601126	599363	600529	+	Cre03.g145627.t1.1	Cre03.g145627.t1.1		599358,599793,600465	599637,599838,601126	
chr3	601131	613477	603473	612980	-	Cre03.g145647.t1.1	Cre03.g145647.t1.1		613141,612955,612562,612066,611367,609434,609147,601131	613477,613019,612732,612304,611798,611263,609310,609027	
chr3	613532	615757	613799	615717	-	Cre03.g145667.t1.1	Cre03.g145667.t1.1		615713,615476,613532	615757,615660,615260	
chr3	615858	618689	615957	618333	+	Cre03.g145687.t1.1	Cre03.g145687.t1.1		615858,616391,616616,616993,617331,617622,617859,618220	616271,616484,616813,617142,617438,617687,618006,618689	ts-lethal mutant was isolated (PMID 29743196)
chr3	618692	622387	618729	621654	-	Cre03.g145707.t1.1	Cre03.g145707.t1.1		621494,620935,620377,620004,619298,618799,618692	622387,621278,620576,620183,619834,618963,618733	
chr3	622948	628579	623210	627793	+	Cre03.g145727.t1.1	Cre03.g145727.t1.1		622948,624109,625161,625734,626231,626603,626911,627367,627676	623654,624212,625233,625793,626301,626690,627018,627468,628579	
chr3	628582	632737	629301	632653	-	Cre03.g145747.t1.1	Cre03.g145747.t1.1		632113,631133,630855,630412,629712,628582	632737,631262,631003,630498,629896,629446	Putative chorismate synthase (EC 4.2.3.5); predicted by Target-P to be mitochondrial, but by homology to be plastidic.  Catalyzes the seventh and final step of the shikimate pathway (PMID: 12242393; PMID: 16963634).  Previously annotated as SHKH1
chr3	632838	640669	632984	640435	+	RRP6	Cre03.g145767.t1.1		632838,633184,633568,634756,635550,635910,637005,637546,637855,638266,638720,639313,639628,640245	633008,633357,634500,635370,635673,636838,637250,637647,637918,638450,639156,639416,639916,640669	contains DEDDy DnaQ-like 3'-5' exonuclease domain like yeast Rrp6p exosome subunit
chr3	632838	640669	632984	640435	+	RRP6	Cre03.g145767.t2.1		632838,633187,633568,634756,635550,635910,637005,637546,637855,638266,638720,639313,639628,640245	633008,633357,634500,635370,635673,636838,637250,637647,637918,638450,639156,639416,639916,640669	contains DEDDy DnaQ-like 3'-5' exonuclease domain like yeast Rrp6p exosome subunit
chr3	640717	642631	640801	641952	+	HSP22C	Cre03.g145787.t1.1		640717,641503	641228,642631	Small heat shock protein containing an alpha-crystallin domain; N-terminus by TargetP weakly predicted to be chloroplast transit peptide; PMID: 16143837
chr3	642705	646977	643352	646634	-	Cre03.g145807.t1.1	Cre03.g145807.t1.1		644791,644034,642705	646977,644494,643895	
chr3	647225	662587	648161	661917	-	Cre03.g145827.t1.1	Cre03.g145827.t1.1		661785,661585,661226,660580,659738,658059,657746,657285,656976,656541,656152,655604,655164,654702,654246,653875,653360,652728,652134,651672,651334,650806,650166,649490,649133,648680,647225	662587,661704,661418,660786,659863,658252,657790,657462,657091,656664,656264,655733,655303,654803,654348,654062,653623,653085,652387,651839,651439,650923,650540,649610,649246,648886,648404	
chr3	662928	666169	663162	665288	+	Cre03.g145847.t1.1	Cre03.g145847.t1.1		662928,663542	663219,666169	
chr3	666186	670947	666670	670860	-	Cre03.g145867.t1.1	Cre03.g145867.t1.1		670808,670626,670295,669640,669000,668713,668366,667535,666186	670947,670725,670512,669992,669296,668784,668548,668176,667384	
chr3	671066	674272	671593	674183	-	TATC	Cre03.g145887.t1.1		674008,673472,673031,672662,672125,671066	674272,673848,673161,672809,672262,671695	The TAT translocon translocates proteins with a Twin Arginine Transit peptide through the thylakoid membrane; May contain additional coding sequence in intronic N-island PMID: 27175017
chr3	674378	678174	674418	677381	+	Cre03.g145907.t1.1	Cre03.g145907.t1.1		674378,674688,675180,675571,676261,676521,676820,677174	674539,674818,675248,675666,676342,676570,677035,678174	
chr3	678228	684509	678512	683972	+	Cre03.g145927.t1.1	Cre03.g145927.t1.1		678228,678480,680007,681771	678287,679892,681588,684509	
chr3	684512	688037	684905	687881	-	Cre03.g145947.t1.1	Cre03.g145947.t1.1		687428,687239,686418,686023,685800,684512	688037,687310,686881,686272,685883,685487	
chr3	688188	693137	688649	693090	-	Cre03.g145967.t1.1	Cre03.g145967.t1.1		692880,692694,692129,691799,691265,690921,690488,689471,688982,688188	693137,692759,692383,691867,691591,690995,690556,689562,689064,688735	
chr3	693268	702095	693458	700504	+	Cre03.g145987.t1.1	Cre03.g145987.t1.1		693268,695920,696404,697132,700375	695711,696198,696739,700122,702095	
chr3	702394	706425	702906	705413	+	Cre03.g146007.t1.1	Cre03.g146007.t1.1		702394,703258,705006,705391	703182,703410,705223,706425	null-allele mutant was isolated (PMID 29743196)
chr3	706474	708529	706505	707791	+	Cre03.g146027.t1.1	Cre03.g146027.t1.1		706474,707251,707737	707042,707520,708529	
chr3	709104	712452	709315	712107	+	Cre03.g146047.t1.1	Cre03.g146047.t1.1		709104,709610,710103,710391,710801,711561,711884	709342,709738,710153,710593,711322,711653,712452	
chr3	712500	725643	713505	725215	-	Cre03.g146067.t1.1	Cre03.g146067.t1.1		724750,724360,723932,723218,722828,722565,722288,721969,721567,721258,720843,720506,719971,718730,718315,718146,717756,717292,716682,716243,715195,714944,714348,714154,713745,712500	725643,724636,724077,723472,722982,722633,722384,722096,721708,721356,721117,720633,720330,719769,718459,718177,717845,717371,716985,716340,715960,714985,714418,714198,713925,713562	
chr3	725748	729753	726300	729633	-	Cre03.g146087.t1.1	Cre03.g146087.t1.1		729358,728222,727844,727568,727382,727147,726796,725748	729753,729116,728038,727626,727438,727204,726989,726472	
chr3	729908	732843	730498	732623	-	Cre03.g146107.t1.1	Cre03.g146107.t1.1		732341,732090,730753,729908	732843,732147,731800,730583	
chr3	732954	736037	733077	735288	+	FAP96	Cre03.g146127.t1.1		732954,733489,733897,734493,735166	733266,733695,734094,734814,736037	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr3	736244	739635	736399	739404	+	PSBS3	Cre03.g146147.t1.1		736244,736743,737046,737538,737875,738226,738522,738827,739125,739371	736525,736829,737099,737645,737964,738348,738620,738910,739244,739635	Similar to PsbS1 and PsbS2 which involved in resistance to high light and UV-B
chr3	739638	742801	740902	742772	-	TEF10a	Cre03.g146167.t1.1		742719,742550,742379,742212,741914,741317,739638	742801,742610,742456,742280,742084,741409,741049	Conserved expressed protein; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr3	742904	748545	742982	747780	+	Cre03.g146187.t1.1	Cre03.g146187.t1.1		742904,743289,743907,744262,744641,745716,746145,746646,746995,747669	743057,743447,744032,744350,744716,745793,746303,746713,747205,748545	
chr3	748714	752518	748946	752062	+	MPA1	Cre03.g146207.t1.1		748714,749399,749623,749876,750245,750543,750853,751053,751510,751874	749113,749439,749731,750015,750327,750624,750899,751266,751647,752518	Putative phosphatase, induced during phosphate deficiency, regulated by the PSR1 transcription factor [PMID: 16400166].
chr3	753294	758735	753338	757667	+	Cre03.g146227.t1.1	Cre03.g146227.t1.1		753294,753725,754073,754347,754896,755113,755639,755913,757050,757273	753635,753782,754195,754705,754963,755509,755809,756911,757120,758735	
chr3	753294	757995	753338	757273	+	Cre03.g146227.t2.1	Cre03.g146227.t2.1		753294,753725,754073,754347,754896,755113,755639,755913,757050,757273	753635,753782,754195,754705,754963,755509,755809,756911,757134,757995	
chr3	759617	762090	760242	761979	-	NUOS4	Cre03.g146247.t1.1		761877,761658,761373,760932,759617	762090,761767,761451,761050,760306	NADH:ubiquinone oxidoreductase 18 kD-like subunit. Complex I AQDQ subunit, mitochondrial [=NDUFS4]. gi|34334026|gb|AAQ64640.1| [PMID: 15710684; PMID: 15450959]
chr3	762759	769833	765695	769574	-	Cre03.g146267.t1.1	Cre03.g146267.t1.1		769157,768741,768351,767441,766974,762759	769833,768896,768437,768106,767220,766729	
chr3	762759	769833	765695	769574	-	Cre03.g146267.t2.1	Cre03.g146267.t2.1		769157,768741,768351,767441,766974,762759	769833,768896,768437,768106,767211,766729	
chr3	770238	774023	771185	773794	-	Cre03.g146287.t1.1	Cre03.g146287.t1.1		773767,773460,773031,772526,771831,771644,770238	774023,773588,773081,772728,772361,771736,771435	
chr3	774438	775833	774698	775194	-	Cre03.g146307.t1.1	Cre03.g146307.t1.1		775152,774438	775833,774926	
chr3	777574	779545	777884	779259	+	Cre03.g146327.t1.1	Cre03.g146327.t1.1		777574	779545	
chr3	779571	783263	780346	782949	-	Cre03.g146347.t1.1	Cre03.g146347.t1.1		781548,780562,779571	783263,781486,780346	
chr3	792748	797183	793276	797145	-	Cre03.g146367.t1.1	Cre03.g146367.t1.1		796763,796571,796162,795809,795321,794840,794574,792748	797183,796657,796439,795940,795662,795153,794702,794405	
chr3	809054	811036	809149	810900	+	Cre03.g146387.t2.1	Cre03.g146387.t2.1		809054,809825,810518,810868	809718,810248,810731,811036	
chr3	807864	811036	809149	810900	+	Cre03.g146387.t1.1	Cre03.g146387.t1.1		807864,809052,809825,810518,810868	808069,809718,810248,810731,811036	
chr3	813074	813885	813241	813636	+	Cre03.g146407.t1.1	Cre03.g146407.t1.1		813074,813474	813259,813885	
chr3	814074	823333	815033	820614	+	Cre03.g146427.t1.1	Cre03.g146427.t1.1		814074,815007,815379,815625,817635,818735,819237,819764	814474,815186,815446,815718,817835,819126,819716,823333	
chr3	823538	827213	824604	827122	-	Cre03.g146447.t1.1	Cre03.g146447.t1.1		827041,826757,826369,826076,825786,825365,823538	827213,826932,826540,826173,825884,825590,824832	
chr3	827374	830665	827836	829973	+	TRS31	Cre03.g146467.t1.1		827374,827980,828186,828602,829298,829852	827902,828077,828249,828709,829443,830665	Expressed Protein. Conserved protein similar to TRS31, a component of the TRAPP complex involved in ER to Golgi vesicle transport.
chr3	830672	839553	832170	839441	-	Cre03.g146487.t1.1	Cre03.g146487.t1.1		839342,839136,838497,838138,836897,836521,836118,835684,835362,834933,834486,834054,833632,833240,832857,832607,832379,830672	839553,839252,839060,838323,837018,836707,836279,835871,835470,835151,834680,834283,833826,833448,833059,832708,832480,832209	Homolog of XPO1 proteins and CRM1 (yeast). Involved in exporting mRNA, protein and ribosomal subunits to the cytoplasm
chr3	839828	844673	840919	844640	-	Cre03.g146507.t1.1	Cre03.g146507.t1.1		844304,843877,843332,842935,842637,842298,842055,841503,839828	844673,843968,843518,843060,842764,842399,842148,841818,841218	first step in sphingolipid biosynthesis
chr3	844774	852395	844831	851867	+	GSD1	Cre03.g146527.t1.1		844774,845083,845414,845741,846187,846691,847159,847720,848242,848682,849012,849491,849969,850337,851064,851479	844912,845140,845479,845799,846315,846828,847311,847800,848410,848806,849169,849629,850046,850468,851104,852395	Glutamate-5-semialdehyde (GSA) dehydrogenase (EC 1.2.1.41); glutamate-5-phosphate reductase; lacks glutamate kinase domain typically associated with this enzyme (delta 1-pyrroline-5-carboxylate synthetase) in plants; glutamate kinase is encoded by a separ
chr3	852497	854619	852878	853098	+	Cre03.g146547.t1.1	Cre03.g146547.t1.1		852497,852858	852679,854619	
chr3	855431	865473	857082	865139	-	Cre03.g146567.t1.1	Cre03.g146567.t1.1		861587,861293,861074,860091,857969,857590,855431	865473,861423,861161,860913,859949,857712,857323	
chr3	867462	875907	868598	875382	-	Cre03.g146587.t1.1	Cre03.g146587.t1.1		875229,874944,874720,874310,874001,867462	875907,874997,874784,874453,874073,868661	
chr3	876108	883609	876167	882940	+	Cre03.g146607.t1.1	Cre03.g146607.t1.1		876108,876499,877864,878880,879539,879751,880080,880588,880966,881251	876251,877701,878715,879382,879620,879878,880459,880769,881070,883609	
chr3	883658	890789	883952	889463	+	Cre03.g146627.t1.1	Cre03.g146627.t1.1		883658,884243,884558,884793,885224,885724,885972,886191,886529,887329,887739,888053,888385,888682,889087,889359	883990,884360,884660,884875,885413,885798,886065,886275,886889,887453,887801,888116,888422,888774,889129,890789	
chr3	890712	892537	890887	892490	-	Cre03.g146647.t1.1	Cre03.g146647.t1.1		892253,892016,891721,890712	892537,892154,891808,891362	
chr3	892952	895997	893489	895792	-	Cre03.g146667.t1.1	Cre03.g146667.t1.1		895585,895353,895006,894648,894303,894038,893729,892952	895997,895454,895128,894779,894402,894114,893782,893570	
chr3	896064	899487	898150	899369	-	Cre03.g146687.t1.1	Cre03.g146687.t1.1		899051,898541,896064	899487,898748,898308	
chr3	899588	901609	899625	901585	+	Cre03.g146707.t1.1	Cre03.g146707.t1.1		899588,899753,900002,900138,900583,901585	899652,899886,900065,900358,900870,901609	
chr3	901658	909778	901716	908890	+	GOX9	Cre03.g146727.t1.1		901658,904561,905233,905641,905904,906175,906622,906791,907016,907269,907500,907703,908307,908525,908740	904486,905177,905479,905699,906038,906413,906650,906884,907109,907375,907593,907909,908437,908642,909778	the substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain
chr3	910468	915749	910545	915116	+	GOX10	Cre03.g146747.t1.1		910468,912087,912320,912637,913002,913144,913369,913641,913854,914061,914361,914635,914942	911959,912136,912454,912875,913030,913237,913462,913732,913947,914267,914491,914752,915749	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and glyoxal oxidase domain (incl SCOP d1k3ia1, E-set domains of sugar-utilizing enzymes); next to GOX11 and GOX9, li,nked to GOX12
chr3	916232	921427	916510	921345	-	GOX11	Cre03.g146767.t1.1		921129,920844,919856,919573,919242,918949,918665,918489,918285,918096,917895,917663,917312,917055,916791,916232	921427,920954,920027,919631,919376,919041,918807,918517,918378,918189,918004,917756,917518,917185,916908,916669	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and glyoxal oxidase domain (incl SCOP d1k3ia1, E-set domains of sugar-utilizing enzymes); next to GOX10 and GOX9, li,nked to GOX12
chr3	921602	923987	922851	923560	-	Cre03.g146787.t1.1	Cre03.g146787.t1.1		923734,921602	923987,923582	
chr3	924801	929397	925080	929003	-	Cre03.g146807.t1.1	Cre03.g146807.t1.1		928442,928130,927749,927260,926905,926446,926012,925625,924801	929397,928209,927871,927408,926987,926566,926212,925768,925352	
chr3	929738	931519	929815	931144	+	Cre03.g146827.t1.1	Cre03.g146827.t1.1		929738,930161,930449,930790,931063	929944,930260,930528,930843,931519	
chr3	931646	933397	932481	932683	-	Cre03.g146847.t1.1	Cre03.g146847.t1.1		931646	933397	
chr3	933537	942387	934546	942159	-	FAP17	Cre03.g146867.t1.1		942123,941990,941542,941078,940677,939901,939718,939201,938936,938705,938420,938028,937707,937525,937124,936657,936333,936089,935439,935184,934910,933537	942387,942055,941652,941248,940811,940157,939772,939403,939016,938798,938503,938147,937754,937587,937318,936755,936431,936190,935540,935282,934988,934557	Contains Ankyrin Repeats
chr3	933537	942387	934546	942159	-	FAP17	Cre03.g146867.t2.1		942123,941990,941542,941078,940677,939901,939718,939201,938936,938705,938420,938028,937707,937525,937124,936657,936333,936089,935439,935184,934910,933537	942387,942055,941652,941248,940808,940157,939772,939403,939016,938798,938503,938147,937754,937587,937318,936755,936431,936190,935540,935282,934988,934557	Contains Ankyrin Repeats
chr3	943016	945597	943396	945525	-	Cre03.g146887.t1.1	Cre03.g146887.t1.1		945440,944255,943693,943016	945597,944549,943903,943564	
chr3	968628	972000	968883	971847	+	Cre03.g148000.t1.2	Cre03.g148000.t1.2		968628,969093,969488,969718,970078,970524,970969,971495	969004,969242,969567,969861,970202,970714,971221,972000	
chr3	972138	981462	972199	981369	+	POLI1	Cre03.g148050.t1.1		972138,972557,972729,972936,973195,973795,974028,974398,974688,974935,975243,975979,977474,977798,978090,978298,978953,979392,979945,980154,980361,980718,980985	972406,972653,972820,973022,973618,973893,974168,974492,974779,975058,975812,977250,977607,977903,978154,978752,979095,979732,980025,980244,980561,980801,981462	Homologous to eukaryotic DNA polymerase iota.  Involved in DNA damage bypass synthesis; a class Y polymerase
chr3	981538	984586	981574	984245	+	Cre03.g148100.t1.2	Cre03.g148100.t1.2		981538,981711,982121,982455,982616,982969,983290,983783,984179	981644,981889,982235,982511,982650,983025,983464,983904,984586	
chr3	984612	993527	985550	993186	-	Cre03.g148150.t1.1	Cre03.g148150.t1.1		991820,991353,990846,990572,990169,989850,989358,988921,988319,987043,986431,985997,985777,984612	993527,991554,990936,990605,990254,989926,989467,989010,988467,988030,986561,986110,985830,985613	
chr3	993668	999456	993960	999353	+	Cre03.g148201.t1.1	Cre03.g148201.t1.1		993668,994686,995309,996570,996830,996990,997172,997857,998121,998452,998715,998949,999180	994557,995164,996376,996660,996868,997042,997703,998006,998188,998552,998812,999015,999456	
chr3	1000011	1014297	1000172	1013548	+	CGL58	Cre03.g148250.t1.1		1000011,1000579,1000993,1001603,1002044,1002315,1006964,1007221,1007467,1007695,1012968,1013350	1000446,1000689,1001420,1001800,1002178,1006739,1007035,1007319,1007540,1012807,1013186,1014297	
chr3	1014300	1020625	1014721	1019904	-	Cre03.g148300.t1.2	Cre03.g148300.t1.2		1020026,1019714,1018795,1018305,1017882,1017325,1016885,1016547,1016160,1015740,1015519,1015210,1014300	1020625,1019906,1019561,1018537,1018145,1017676,1017166,1016645,1016324,1015871,1015567,1015301,1014979	
chr3	1020726	1023060	1020871	1022627	+	Cre03.g148350.t1.2	Cre03.g148350.t1.2		1020726,1021614,1022032,1022371	1021417,1021766,1022174,1023060	
chr3	1023804	1025445	1024249	1025087	-	Cre03.g148400.t1.2	Cre03.g148400.t1.2		1023804	1025445	
chr3	1025577	1031745	1026020	1031649	-	TEH1	Cre03.g148450.t1.1		1031540,1031109,1030843,1030298,1029549,1028671,1028356,1027933,1027724,1026809,1026199,1025577	1031745,1031356,1030905,1030465,1029835,1029319,1028493,1028133,1027774,1027555,1026647,1026020	
chr3	1032746	1034427	1032834	1033920	+	PWR6	Cre03.g148500.t1.2		1032746,1033174,1033485	1032900,1033308,1034427	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr3	1091622	1094265	1092787	1093856	-	PWR7	Cre03.g148700.t1.2		1093796,1093444,1091622	1094265,1093575,1093228	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr3	1094326	1097815	1094866	1097718	-	Cre03.g148750.t1.2	Cre03.g148750.t1.2		1097547,1096959,1096456,1096029,1095793,1095193,1094326	1097815,1097069,1096600,1096255,1095882,1095258,1094965	Chlorophyllase I, chloroplast precursor, putative; chlorophyllase protein; pfam7224; orthologous to AtCLH1; coronatine (methyl jasmonate) -induced protein 1 (CORI1) [PMID: 1611389]; chloroplast transit peptide 1-46, borderline probability using ChloroP
chr3	1097956	1101197	1097984	1100148	+	Cre03.g148800.t1.1	Cre03.g148800.t1.1		1097956,1098491,1098916,1099494,1099992	1098317,1098670,1099269,1099658,1101197	
chr3	1101210	1105895	1101369	1105687	-	Cre03.g148850.t1.1	Cre03.g148850.t1.1		1105289,1105116,1104819,1104537,1104215,1103899,1103587,1103374,1101210	1105895,1105159,1104952,1104677,1104295,1104108,1103685,1103415,1103181	
chr3	1105947	1116455	1107652	1116252	-	FMO5	Cre03.g148900.t1.1		1116065,1115767,1115524,1115065,1114789,1114523,1114191,1113876,1113579,1113141,1112758,1112402,1112091,1109068,1105947	1116455,1115801,1115577,1115208,1114854,1114615,1114268,1114043,1113720,1113224,1112927,1112554,1112187,1111922,1108918	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification
chr3	1116576	1121166	1117093	1120747	+	CGL43	Cre03.g148950.t1.2		1116576,1117225,1117384,1118271,1118536,1118855,1119284,1119633,1119922,1120179,1120561	1117138,1117287,1117513,1118375,1118639,1118989,1119374,1119724,1119987,1120244,1121166	Conserved in the Green Lineage
chr3	1121346	1125127	1121754	1124972	+	Cre03.g149001.t1.1	Cre03.g149001.t1.1		1121346,1121907,1123846,1124052,1124497	1121775,1121999,1123935,1124332,1125127	
chr3	1125438	1129525	1125970	1129420	-	Cre03.g149050.t1.1	Cre03.g149050.t1.1		1129417,1129330,1128887,1128676,1128386,1127733,1127513,1127200,1126988,1126837,1126566,1126319,1125438	1129525,1129378,1129102,1128793,1128476,1128175,1127618,1127310,1127056,1126885,1126722,1126445,1126135	
chr3	1129580	1134612	1130870	1134502	-	CIS2	Cre03.g149100.t1.2		1134355,1134161,1133827,1133426,1133137,1132805,1132414,1131878,1131505,1131182,1129580	1134612,1134255,1134007,1133554,1133214,1132960,1132596,1132060,1131635,1131312,1130944	Citrate synthase (EC 2.3.3.1), glyoxysomal/microbody form; similarity to Arabidopsis citrate synthase glyoxysomal precursor (GenBank Q9LXS6); PMID: 1921471
chr3	1134756	1137125	1134872	1136567	+	Cre03.g149150.t1.2	Cre03.g149150.t1.2		1134756,1136324	1135919,1137125	
chr3	1137626	1142927	1137980	1142122	+	Cre03.g149201.t1.1	Cre03.g149201.t1.1		1137626,1138284,1138709,1138948,1139176,1141058	1138192,1138409,1138783,1139008,1140946,1142927	null-allele mutant was isolated (PMID 29743196)
chr3	1142955	1147575	1143351	1147457	-	ICL2	Cre03.g149250.t1.2		1147253,1146972,1146532,1146309,1145926,1145571,1145257,1144884,1144561,1144174,1143916,1143598,1142955	1147575,1147118,1146639,1146341,1146102,1145678,1145382,1144973,1144747,1144458,1143971,1143673,1143383	Isocitrate lyase/phosphorylmutase
chr3	1147706	1153287	1147766	1153049	+	Cre03.g149300.t1.1	Cre03.g149300.t1.1		1147706,1148079,1148306,1148657,1148848,1149139,1149617,1150065,1150289,1150622,1150931,1151199,1151548,1151824,1152148	1147928,1148164,1148456,1148699,1148954,1149294,1149784,1150124,1150340,1150790,1150976,1151267,1151631,1151930,1153287	
chr3	1153289	1162645	1155204	1161694	-	RWP4	Cre03.g149350.t1.1		1161966,1161481,1161228,1159755,1156388,1155930,1155691,1155471,1153289	1162645,1161746,1161336,1161019,1159513,1156130,1155780,1155546,1155311	putative RWP-RK domain transcription factor [PMID: 15785851]; forms a tandem pair with RWP11 with which there is amino acid homology around the RWP-RK domain and some intron conservation
chr3	1163628	1173935	1164979	1173158	-	RWP11	Cre03.g149400.t1.1		1173085,1172429,1171599,1169474,1166767,1166482,1166254,1165970,1165183,1163628	1173935,1172877,1172270,1171435,1169280,1166564,1166371,1166059,1165549,1165023	putative RWP-RK domain transcription factor [PMID: 15785851]; forms a tandem pair with RWP4 with which there is amino acid homology around the RWP-RK domain and some intron conservation; null-allele mutant was isolated (PMID 29743196)
chr3	1174974	1184119	1175809	1183986	-	Cre03.g149450.t1.1	Cre03.g149450.t1.1		1183356,1183138,1182821,1182497,1182063,1181682,1181412,1181177,1180356,1179887,1179080,1178714,1178397,1178065,1177874,1177339,1176717,1176342,1174974	1184119,1183188,1182900,1182543,1182201,1181769,1181486,1181260,1180859,1180034,1179546,1178806,1178461,1178128,1177946,1177580,1177130,1176467,1175959	null-allele mutant was isolated (PMID 29743196)
chr3	1184250	1188401	1184353	1187576	+	Cre03.g149500.t1.1	Cre03.g149500.t1.1		1184250,1184587,1185002,1185442,1185878,1186175,1187096,1187393	1184422,1184676,1185085,1185513,1185997,1186789,1187254,1188401	
chr3	1189110	1191571	1189499	1189746	+	Cre03.g149517.t1.1	Cre03.g149517.t1.1		1189110,1189470	1189141,1191571	
chr3	1189110	1190111	1189499	1189746	+	Cre03.g149517.t2.1	Cre03.g149517.t2.1		1189110,1189470	1189141,1190111	
chr3	1191574	1196549	1192640	1196385	-	Cre03.g149550.t1.1	Cre03.g149550.t1.1		1196296,1195380,1195018,1194742,1194355,1193916,1191574	1196549,1196208,1195136,1194873,1194569,1194172,1193741	
chr3	1196830	1207584	1197651	1206732	+	CYG53	Cre03.g149600.t1.1		1196830,1197554,1198430,1199044,1199802,1200109,1200365,1201403,1201806,1202454,1202994,1204143,1204523,1204905,1205137,1205488,1205831	1197438,1197663,1198757,1199581,1199948,1200174,1201220,1201652,1202121,1202805,1203996,1204293,1204695,1204979,1205300,1205645,1207584	Protein domain similar to membrane guanylyl cyclase [Oryzias latipes]
chr3	1211234	1219789	1212937	1219725	-	CCD1	Cre03.g149650.t1.1		1219600,1219314,1218844,1218413,1217798,1217153,1216901,1216504,1216177,1215655,1215273,1214833,1214550,1214206,1213510,1213227,1211234	1219789,1219374,1218937,1218470,1217891,1217235,1216944,1216577,1216282,1215842,1215333,1214966,1214609,1214366,1213798,1213314,1213059	related to carotenoid 9,1-9',1' cleavage dioxygenase; homologue in higher plants participates in abscisic acid biosynthesis; could play a similar role (PMID: 16327238)
chr3	1220134	1225269	1220750	1225098	-	Cre03.g149700.t1.2	Cre03.g149700.t1.2		1224647,1224207,1223797,1223553,1223146,1222777,1222367,1222043,1221724,1221420,1221153,1220134	1225269,1224392,1223952,1223637,1223314,1222894,1222464,1222156,1221810,1221499,1221227,1220889	
chr3	1225430	1228491	1225526	1228070	+	DMA2	Cre03.g149750.t1.2		1225430,1226088,1226590,1226896,1227292,1227680	1225840,1226423,1226686,1227054,1227447,1228491	Putative DNA methylase, N-6 adenine-specific with homology to the HemK bacterial methylase family
chr3	1228500	1241879	1228921	1241802	-	TOG1	Cre03.g149800.t1.1		1241636,1241444,1241156,1240865,1240608,1240219,1239822,1239503,1239214,1238916,1238655,1238472,1238314,1238079,1237816,1237534,1237272,1236847,1236301,1235939,1235544,1235288,1235089,1234901,1234651,1234423,1234177,1233974,1233757,1233382,1233085,1232451,1232126,1231742,1231533,1231221,1230975,1230736,1230073,1229837,1229468,1229206,1228500	1241879,1241552,1241279,1240944,1240713,1240467,1240010,1239637,1239310,1238986,1238780,1238540,1238397,1238214,1237940,1237665,1237373,1237130,1236709,1236115,1235813,1235449,1235198,1234991,1234761,1234517,1234278,1234049,1233828,1233634,1233227,1232949,1232277,1231939,1231603,1231398,1231061,1230829,1230608,1229908,1229717,1229312,1229050	Microtubule associated protein also known as MOR1 and XMAP215/Dis1
chr3	1241944	1245559	1242514	1245127	-	Cre03.g149851.t1.1	Cre03.g149851.t1.1		1245260,1244437,1243720,1243020,1241944	1245559,1245151,1244225,1243547,1242824	
chr3	1245680	1249057	1245800	1248683	+	Cre03.g149900.t1.1	Cre03.g149900.t1.1		1245680,1246020,1247244,1247843,1248403	1245923,1247018,1247671,1248085,1249057	
chr3	1249064	1254496	1249612	1254325	-	Cre03.g149950.t1.1	Cre03.g149950.t1.1		1253995,1253757,1253410,1252925,1252425,1251837,1251344,1250995,1250463,1249973,1249064	1254496,1253834,1253493,1253062,1252557,1252042,1251525,1251043,1250608,1250153,1249627	
chr3	1256050	1259381	1256833	1258764	+	Cre03.g150000.t1.1	Cre03.g150000.t1.1		1256050,1257764,1258041	1257607,1257874,1259381	
chr3	1259383	1263019	1260357	1262296	-	Cre03.g150050.t1.1	Cre03.g150050.t1.1		1262635,1261375,1259383	1263019,1262379,1261098	
chr3	1263074	1271019	1264417	1270937	-	NRT2.4	Cre03.g150101.t1.1		1266291,1265908,1265563,1265214,1263074	1271019,1266118,1265664,1265344,1264778	next to NRT2.5
chr3	1271124	1275859	1271242	1275389	-	NRT2.5	Cre03.g150151.t1.1		1273433,1273089,1272821,1272407,1271485,1271124	1275859,1273211,1272951,1272681,1272161,1271380	next to NRT2.4
chr3	1276009	1280429	1276383	1280103	-	Cre03.g150200.t1.2	Cre03.g150200.t1.2		1279781,1279490,1279293,1279016,1278718,1278217,1277884,1277446,1276977,1276009	1280429,1279610,1279356,1279168,1278817,1278452,1277968,1277492,1277122,1276579	
chr3	1280674	1290039	1281721	1289031	-	Cre03.g150251.t1.1	Cre03.g150251.t1.1		1289672,1286928,1286646,1283937,1282852,1282501,1282211,1280674	1290039,1289288,1286790,1284996,1283703,1282655,1282310,1281890	
chr3	1290492	1292539	1291538	1292449	-	CAM8	Cre03.g150300.t1.2		1292405,1292253,1291955,1290492	1292539,1292272,1292151,1291715	Similar to Dictyostelium protein localised to the contractile vacuole
chr3	1292640	1303101	1292827	1302703	+	CPLD70	Cre03.g150350.t1.1		1292640,1293093,1295317,1295751,1296398,1296623,1297128,1297466,1297874,1298281,1298575,1298817,1299117,1299494,1299811,1300465,1300906,1301182,1301725	1292890,1295130,1295369,1296167,1296454,1296821,1297225,1297624,1298119,1298397,1298646,1298925,1299329,1299621,1300140,1300601,1300960,1301286,1303101	
chr3	1303125	1306779	1303390	1306658	-	PIGU	Cre03.g150400.t1.2		1306315,1305815,1304652,1304247,1303747,1303125	1306779,1306092,1305590,1304371,1303963,1303534	also described as involved in blue light signaling in gametogenesis [PMID: 9351252]
chr3	1306930	1311058	1307306	1309195	+	Cre03.g150450.t1.2	Cre03.g150450.t1.2		1306930,1308625,1309032	1308289,1308750,1311058	
chr3	1311074	1314459	1311351	1314413	-	SNE10	Cre03.g150500.t1.2		1314266,1314058,1313764,1313272,1312511,1312112,1311745,1311074	1314459,1314140,1313856,1313362,1313059,1312222,1311900,1311528	Possible dihydrokaempferol 4-reductase
chr3	1314570	1315641	1314768	1315618	+	Cre03.g150550.t1.2	Cre03.g150550.t1.2		1314570,1314976	1314897,1315641	
chr3	1315690	1323981	1315742	1322935	+	Cre03.g150600.t1.2	Cre03.g150600.t1.2		1315690,1316529,1316999,1317932,1318423,1319303,1320178,1320887,1321204,1321705,1322145,1322439,1322796	1316222,1316621,1317130,1318078,1318574,1319471,1320295,1320972,1321275,1321887,1322219,1322503,1323981	
chr3	1324167	1326181	1324237	1325633	+	Cre03.g150650.t1.2	Cre03.g150650.t1.2		1324167,1324447,1325280	1324378,1325104,1326181	
chr3	1326184	1333169	1326650	1333125	-	Cre03.g150700.t1.1	Cre03.g150700.t1.1		1333021,1332677,1332389,1331934,1331553,1331019,1330652,1330353,1329931,1329661,1329418,1328801,1328282,1328024,1327662,1326184	1333169,1332850,1332479,1332008,1331626,1331148,1330742,1330425,1330059,1329713,1329511,1329093,1328502,1328120,1327771,1326710	
chr3	1335097	1338299	1336004	1338258	-	Cre03.g150750.t1.2	Cre03.g150750.t1.2		1338254,1338056,1337356,1336733,1336365,1335097	1338299,1338170,1337502,1336799,1336514,1336106	
chr3	1335097	1338359	1336004	1338041	-	Cre03.g150750.t2.1	Cre03.g150750.t2.1		1338340,1338032,1337670,1337356,1336733,1336365,1335097	1338359,1338170,1337692,1337502,1336799,1336514,1336106	
chr3	1368366	1369183	1368466	1369126	-	Cre03.g150767.t1.1	Cre03.g150767.t1.1		1369096,1368811,1368366	1369183,1368997,1368606	
chr3	1369304	1371095	1369446	1369636	+	Cre03.g150783.t1.1	Cre03.g150783.t1.1		1369304	1371095	
chr3	1371148	1387013	1371906	1386528	-	Cre03.g150800.t1.1	Cre03.g150800.t1.1		1386363,1386120,1385814,1385488,1384792,1384298,1383838,1383494,1382443,1381448,1381207,1380844,1379820,1379366,1379024,1378791,1378620,1377947,1376940,1376565,1375792,1375262,1374841,1374398,1373993,1373710,1373443,1373012,1372663,1372357,1371148	1387013,1386168,1385883,1385629,1385264,1384440,1383986,1383563,1383209,1382177,1381283,1380936,1380411,1379523,1379080,1378862,1378688,1378070,1377625,1376746,1376286,1375362,1374966,1374695,1374077,1373796,1373511,1373104,1372802,1372440,1372108	null-allele mutant was isolated (PMID 29743196)
chr3	1388184	1391189	1388281	1390643	+	Cre03.g150850.t1.2	Cre03.g150850.t1.2		1388184,1388630,1389658,1389872,1390187	1388459,1389537,1389713,1390001,1391189	
chr3	1393574	1400672	1393613	1399121	+	Cre03.g150900.t1.2	Cre03.g150900.t1.2		1393574,1394256,1395073,1395375,1397076,1397280,1397453,1397801,1398257,1398737	1393962,1394456,1395194,1395457,1397160,1397353,1397618,1398070,1398373,1400672	
chr3	1400836	1402679	1401750	1402516	-	DPM1	Cre03.g150950.t1.1		1400836	1402679	
chr3	1402774	1408133	1402899	1407530	+	DSP8	Cre03.g151000.t1.2		1402774,1403074,1403381,1403594,1404157,1404461,1404851,1405123,1405456,1405835,1406241,1406620,1406941,1407326	1402946,1403171,1403410,1403768,1404220,1404523,1404898,1405209,1405522,1405950,1406336,1406717,1407034,1408133	Dual Specificity Protein Phosphatase Homolog 8
chr3	1408234	1411759	1408703	1411088	+	Cre03.g151050.t1.1	Cre03.g151050.t1.1		1408234,1409087,1409305,1409727	1408859,1409178,1409510,1411759	
chr3	1411761	1419253	1412888	1419143	-	SSA15	Cre03.g151100.t1.1		1419036,1418632,1418365,1418084,1417753,1417441,1417106,1416733,1416161,1415865,1415601,1415099,1414807,1414182,1413778,1413531,1413203,1411761	1419253,1418805,1418455,1418158,1417826,1417567,1417229,1416802,1416289,1415923,1415694,1415363,1414861,1414306,1413810,1413606,1413291,1412984	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr3	1419354	1425385	1419551	1425059	+	Cre03.g151150.t1.2	Cre03.g151150.t1.2		1419354,1419815,1420113,1421990	1419589,1419915,1421692,1425385	
chr3	1425392	1427113	1426083	1427059	-	CGLD16	Cre03.g151200.t1.2		1426923,1426378,1425392	1427113,1426472,1426185	
chr3	1427214	1431576	1427342	1430766	+	LAN1	Cre03.g151250.t1.1		1427214,1427923,1428479,1428908,1429316,1429704,1430113,1430639	1427735,1428228,1428566,1429112,1429505,1429807,1430250,1431576	similar to LanC lantibiotic synthetase component C
chr3	1431578	1440023	1432816	1439759	-	Cre03.g151300.t1.1	Cre03.g151300.t1.1		1439732,1439034,1438560,1438071,1436984,1436609,1436079,1435825,1435466,1435220,1434908,1434621,1434261,1433556,1433266,1431578	1440023,1439238,1438791,1438312,1437894,1436725,1436162,1435893,1435571,1435364,1434965,1434627,1434376,1433762,1433307,1432993	
chr3	1431578	1440023	1432816	1439170	-	Cre03.g151300.t2.1	Cre03.g151300.t2.1		1439595,1439034,1438560,1438071,1436984,1436609,1436079,1435825,1435466,1435220,1434908,1434621,1434261,1433556,1433266,1431578	1440023,1439238,1438791,1438312,1437894,1436725,1436162,1435893,1435571,1435364,1434965,1434627,1434376,1433762,1433307,1432993	
chr3	1440124	1442182	1440238	1441390	+	Cre03.g151351.t1.1	Cre03.g151351.t1.1		1440124,1440632,1440699,1441027,1441369	1440285,1440645,1440805,1441146,1442182	
chr3	1442524	1464585	1442671	1463971	+	Cre03.g151400.t1.1	Cre03.g151400.t1.1		1442524,1443055,1443451,1444298,1445020,1446071,1446396,1446877,1447289,1447922,1448321,1448722,1449048,1449690,1449991,1450291,1450508,1451028,1451554,1451951,1452300,1453170,1453544,1454173,1454685,1455168,1455727,1456099,1456508,1456944,1457651,1458033,1458310,1458735,1459370,1460214,1460581,1461298,1461759,1462399,1463120,1463766	1442794,1443190,1444028,1444689,1445545,1446161,1446441,1446949,1447438,1448027,1448445,1448890,1449280,1449735,1450088,1450334,1450583,1451162,1451661,1452031,1452533,1453349,1453957,1454455,1454953,1455416,1455818,1456198,1456599,1457084,1457756,1458107,1458449,1458816,1459777,1460343,1460764,1461399,1461904,1462531,1463473,1464585	
chr3	1464784	1468546	1465148	1467969	+	Cre03.g151450.t1.2	Cre03.g151450.t1.2		1464784,1465466,1466368,1467621	1465214,1465703,1467104,1468546	
chr3	1468628	1474503	1469566	1473810	-	Cre03.g151500.t1.1	Cre03.g151500.t1.1		1474186,1473949,1473768,1473597,1473251,1472963,1472606,1472283,1471883,1471431,1470968,1470654,1470465,1470012,1468628	1474503,1474043,1473844,1473668,1473310,1473011,1472723,1472367,1471945,1471522,1471052,1470704,1470521,1470125,1469767	Alanine racemase/threonine aldolase
chr3	1474604	1482545	1474714	1481620	+	Cre03.g151550.t1.1	Cre03.g151550.t1.1		1474604,1474813,1476629,1477101,1477463,1481560	1474717,1476345,1476889,1477190,1481395,1482545	
chr3	1482548	1484413	1483046	1484369	-	Cre03.g151600.t1.2	Cre03.g151600.t1.2		1484200,1483895,1483598,1482548	1484413,1484031,1483660,1483124	
chr3	1484546	1488282	1484649	1487618	+	Cre03.g151650.t1.1	Cre03.g151650.t1.1		1484546,1484913,1485485,1485848,1486286,1486586,1486836,1487247,1487575	1484748,1485050,1485560,1485931,1486347,1486657,1486902,1487442,1488282	
chr3	1488584	1491676	1488662	1491306	+	CGL26	Cre03.g151700.t1.2		1488584,1488939,1489189,1489509,1490077,1490752,1491070	1488872,1489067,1489287,1489589,1490202,1490815,1491676	ts-lethal mutant has fragile cell membrane when poked with a needle at restrictive temperature (PMID 29743196)
chr3	1488584	1491676	1488662	1491070	+	CGL26	Cre03.g151700.t2.1		1488584,1488939,1489189,1489509,1490077,1490752,1491070	1488872,1489067,1489287,1489589,1490202,1490879,1491676	ts-lethal mutant has fragile cell membrane when poked with a needle at restrictive temperature (PMID 29743196)
chr3	1491724	1494295	1491835	1493830	+	SMP6A	Cre03.g151750.t1.2		1491724,1491977,1492946,1493406,1493792	1491877,1492052,1492998,1493466,1494295	putative U6 small ribonucleoprotein F, sm protein
chr3	1494297	1497703	1494827	1497412	-	Cre03.g151800.t1.2	Cre03.g151800.t1.2		1496928,1496616,1496200,1495844,1495506,1494297	1497703,1496761,1496427,1495954,1495590,1495150	
chr3	1497834	1501135	1497870	1500752	+	Cre03.g151850.t1.2	Cre03.g151850.t1.2		1497834,1498629,1499034,1499379,1499822,1500269,1500656	1498275,1498706,1499081,1499483,1499947,1500373,1501135	
chr3	1501184	1502288	1501231	1501777	+	LZY1A	Cre03.g151900.t1.2		1501184,1501685	1501403,1502288	pseudogene tandem duplicate of LZY1B [PMID: 1552907]; Genbank S90875
chr3	1503404	1504358	1503459	1503979	+	LZY1B	Cre03.g151950.t1.2		1503404,1503884	1503625,1504358	late zygote protein; the mRNA appears at about 90 min post fusion; possibly secreted; cysteine-rich; originally called class V [PMID: 1552907; Genbank S90874]; pseudogene duplicate LYZ1A is in tandem
chr3	1504754	1512035	1504927	1511607	+	MCS1	Cre03.g152000.t1.2		1504754,1505562,1505914,1507093,1507879,1508258,1509442,1509946,1510536,1511250	1505319,1505691,1506863,1507603,1507994,1509198,1509794,1510266,1510808,1512035	similar to N-terminus of Arabidopsis ABA3
chr3	1512048	1518933	1512225	1518824	-	GOX12	Cre03.g152050.t1.2		1518604,1518196,1517853,1517625,1517326,1516996,1516699,1516394,1516139,1515667,1515209,1514911,1514633,1514027,1513782,1513248,1512818,1512048	1518933,1518355,1517916,1517699,1517382,1517091,1516758,1516447,1516196,1515763,1515305,1515008,1514723,1514199,1513836,1513378,1512995,1512393	shows the conserved Cys residue whose linkage to Tyr forms the metal-binding radical [PMID: 15581579]; the substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain; linked to GOX9, 10, 11
chr3	1519090	1528373	1519698	1528138	-	XRN2	Cre03.g152100.t1.2		1528059,1527828,1527166,1526816,1526486,1526051,1525741,1525171,1524672,1524034,1523560,1522702,1522321,1522051,1521763,1521324,1519090	1528373,1527878,1527311,1526929,1526542,1526123,1525793,1525302,1524777,1524303,1523692,1523107,1522461,1522156,1521823,1521594,1521063	Putative homologue of yeast 5'-3' exoribonucleases Xrn1p(cytoplasmic) and Rat1p (nuclear); Rhythm of Chloroplast mutation roc86 maps to this gene
chr3	1528514	1531763	1528961	1530576	+	Cre03.g152150.t1.2	Cre03.g152150.t1.2		1528514,1528950,1529899,1530294	1528636,1529737,1530082,1531763	
chr3	1531788	1535353	1531912	1535129	-	Cre03.g152200.t1.1	Cre03.g152200.t1.1		1535116,1534781,1533924,1533497,1532886,1532480,1531788	1535353,1534824,1534046,1533755,1533312,1532735,1532290	
chr3	1535408	1538903	1536390	1538396	-	Cre03.g152250.t1.1	Cre03.g152250.t1.1		1538571,1538144,1537709,1537305,1536877,1535408	1538903,1538460,1537967,1537539,1537132,1536678	
chr3	1542036	1549131	1543002	1548804	-	Cre03.g152300.t1.2	Cre03.g152300.t1.2		1548708,1548314,1548049,1547669,1547323,1547051,1546807,1545861,1543793,1542036	1549131,1548467,1548119,1547781,1547416,1547073,1546892,1546509,1544552,1543002	
chr3	1549472	1550573	1549883	1550049	+	Cre03.g152326.t1.1	Cre03.g152326.t1.1		1549472	1550573	
chr3	1550622	1556713	1550719	1556487	+	Cre03.g152350.t1.1	Cre03.g152350.t1.1		1550622,1551436,1552769,1553085,1553400,1554784,1555226,1555487,1555854,1556086,1556380	1551277,1552428,1552886,1553253,1554559,1554911,1555264,1555574,1555918,1556161,1556713	
chr3	1556715	1559531	1557152	1559501	-	EXN1	Cre03.g152400.t1.1		1559415,1559161,1558748,1558444,1558002,1557829,1557528,1556715	1559531,1559246,1558913,1558585,1558163,1557861,1557614,1557263	Conserved in plants and parasites
chr3	1559586	1561861	1559715	1561845	-	Cre03.g152425.t1.2	Cre03.g152425.t1.2		1561743,1561564,1561180,1560743,1560318,1559983,1559586	1561861,1561660,1561318,1560923,1560512,1560069,1559826	
chr3	1561916	1569391	1562221	1569244	-	Cre03.g152450.t1.2	Cre03.g152450.t1.2		1569096,1568574,1568233,1567825,1567341,1566813,1566282,1565830,1565320,1564517,1563891,1563344,1562644,1561916	1569391,1568857,1568387,1567870,1567466,1567049,1566460,1565947,1565400,1564758,1564263,1563565,1563135,1562404	
chr3	1577873	1583021	1578207	1582572	-	Cre03.g152500.t1.1	Cre03.g152500.t1.1		1582229,1581997,1581698,1580964,1580537,1580154,1579744,1579533,1579077,1578830,1577873	1583021,1582060,1581833,1581513,1580684,1580214,1579956,1579592,1579233,1578920,1578553	
chr3	1583142	1597093	1583599	1596572	+	Cre03.g152550.t1.1	Cre03.g152550.t1.1		1583142,1583428,1583879,1584221,1584576,1585026,1585433,1585768,1586146,1586722,1587167,1587569,1588558,1588945,1589514,1590541,1590933,1591259,1591748,1592486,1592857,1593538,1593915,1594446,1595324,1595788,1596096	1583270,1583786,1584038,1584356,1584653,1585127,1585504,1586021,1586504,1586909,1587252,1588270,1588783,1589247,1590197,1590769,1591066,1591621,1592239,1592620,1593267,1593675,1594085,1594541,1595530,1595887,1597093	
chr3	1597142	1601310	1598049	1599942	+	Cre03.g152600.t1.1	Cre03.g152600.t1.1		1597142,1597451,1597932,1598245	1597262,1597589,1598053,1601310	
chr3	1602826	1607751	1604315	1607078	-	Cre03.g152650.t1.1	Cre03.g152650.t1.1		1606903,1606741,1606531,1606064,1605302,1604957,1602826	1607751,1606782,1606551,1606114,1605793,1605158,1604736	
chr3	1609635	1612802	1611323	1611951	+	Cre03.g152701.t1.1	Cre03.g152701.t1.1		1609635,1610324,1611157	1609932,1610367,1612802	
chr3	1613793	1617780	1613905	1617215	+	Cre03.g152750.t1.1	Cre03.g152750.t1.1		1613793,1614337,1615948	1614078,1615704,1617780	
chr3	1618342	1621402	1618719	1620688	+	Cre03.g152800.t1.2	Cre03.g152800.t1.2		1618342,1619349,1619779,1620060,1620445	1618941,1619534,1619916,1620203,1621402	
chr3	1621584	1630163	1621749	1629668	+	Cre03.g152850.t1.2	Cre03.g152850.t1.2		1621584,1622202,1622585,1622947,1623310,1623611,1623905,1624121,1624500,1624996,1625320,1625718,1626079,1626551,1626847,1627422,1627718,1628015,1628618,1628925,1629389	1621990,1622298,1622681,1623110,1623404,1623731,1624013,1624302,1624707,1625091,1625410,1625809,1626162,1626613,1627080,1627538,1627819,1628107,1628716,1629041,1630163	
chr3	1630212	1634823	1630485	1634426	+	MPA5	Cre03.g152900.t1.1		1630212,1630445,1630694,1630934,1631202,1631494,1631795,1632024,1632366,1632632,1632885,1633063,1633293,1633598,1633904,1634253	1630337,1630547,1630751,1630988,1631283,1631602,1631886,1632144,1632466,1632713,1632926,1633123,1633417,1633629,1634106,1634823	
chr3	1634826	1642451	1636873	1642382	-	PUS12	Cre03.g152950.t1.1		1642123,1641931,1641618,1641304,1640970,1640625,1640403,1639695,1639370,1638983,1638478,1638251,1637420,1634826	1642451,1641977,1641737,1641438,1641045,1640698,1640478,1640201,1639519,1639091,1638590,1638342,1637509,1637185	
chr3	1642549	1647117	1642728	1646281	+	Cre03.g153000.t1.1	Cre03.g153000.t1.1		1642549,1642852,1642979,1643270,1643683,1643971,1644876,1645253,1645757,1646113	1642746,1642890,1643093,1643448,1643802,1644709,1645066,1645435,1645894,1647117	
chr3	1647754	1654121	1649623	1653644	-	RWP1	Cre03.g153050.t1.1		1653991,1652544,1649974,1647754	1654121,1653714,1652395,1649815	Putative RWP-RK domain transcription factor [PMID: 15785851]
chr3	1654176	1655871	1655423	1655655	-	Cre03.g153076.t1.1	Cre03.g153076.t1.1		1654176	1655871	
chr3	1655986	1659493	1656207	1659047	+	Cre03.g153100.t1.1	Cre03.g153100.t1.1		1655986,1656730,1657373,1657683,1658486,1658860	1656498,1657205,1657475,1657886,1658646,1659493	
chr3	1659552	1671843	1659772	1670502	+	Cre03.g153150.t1.2	Cre03.g153150.t1.2		1659552,1660047,1660651,1661330,1661637,1662051,1662475,1662858,1663135,1663519,1663898,1664661	1659850,1660163,1661175,1661366,1661805,1662180,1662543,1662944,1663287,1663693,1664520,1671843	
chr3	1673156	1679811	1674671	1678518	-	Cre03.g153200.t1.1	Cre03.g153200.t1.1		1679375,1678872,1678502,1678274,1677709,1677096,1676579,1673156	1679811,1678964,1678617,1678329,1677933,1677423,1676937,1676318	
chr3	1680025	1683901	1680428	1683628	-	Cre03.g153250.t1.1	Cre03.g153250.t1.1		1683571,1683220,1682693,1682258,1680934,1680025	1683901,1683435,1683008,1682472,1682068,1680685	
chr3	1684707	1690061	1685566	1690029	-	Cre03.g153300.t1.1	Cre03.g153300.t1.1		1689894,1689405,1687855,1687030,1686801,1686102,1685832,1684707	1690061,1689617,1688170,1687527,1686890,1686653,1685872,1685632	
chr3	1690116	1701271	1690778	1700464	-	Cre03.g153306.t1.2	Cre03.g153306.t1.2		1701105,1700454,1700177,1699669,1699248,1698550,1698255,1696865,1696660,1695956,1695733,1695312,1694910,1694185,1693696,1693031,1692250,1692021,1691314,1691044,1690116	1701271,1700626,1700283,1699896,1699536,1699101,1698392,1698093,1696744,1696429,1695764,1695536,1695153,1694717,1693908,1693346,1692747,1692110,1691865,1691084,1690844	
chr3	1707136	1718761	1708256	1717698	-	Cre03.g153400.t1.2	Cre03.g153400.t1.2		1718587,1717404,1717040,1716664,1715925,1715573,1715142,1714374,1713789,1712856,1712618,1712065,1709914,1707136	1718761,1717921,1717167,1716754,1716388,1715728,1715209,1714983,1713915,1713566,1712691,1712201,1711684,1709655	
chr3	1718862	1722263	1719412	1720584	+	Cre03.g153450.t1.2	Cre03.g153450.t1.2		1718862,1719794,1720506	1719625,1719943,1722263	
chr3	1722312	1723743	1722458	1723039	+	Cre03.g153500.t1.2	Cre03.g153500.t1.2		1722312,1722805	1722554,1723743	
chr3	1723822	1726443	1723962	1725863	+	Cre03.g153550.t1.2	Cre03.g153550.t1.2		1723822,1724146,1724468,1725004,1725383,1725605,1725776	1724010,1724210,1724557,1725044,1725444,1725652,1726443	
chr3	1726446	1733351	1728180	1733220	-	Cre03.g153600.t1.2	Cre03.g153600.t1.2		1732917,1731594,1731020,1730323,1729969,1729555,1729153,1728725,1726446	1733351,1732550,1731144,1730410,1730049,1729662,1729257,1728766,1728429	
chr3	1733652	1735828	1733823	1735348	+	Cre03.g153650.t1.2	Cre03.g153650.t1.2		1733652,1734244,1734602,1734949,1735309	1733874,1734317,1734659,1735017,1735828	
chr3	1736022	1741553	1736105	1740690	+	FAP347	Cre03.g153700.t1.1		1736022,1736926,1737249,1737604,1737960,1738261,1738603,1738958,1739367,1739672,1740108,1740519	1736578,1737070,1737326,1737743,1738080,1738337,1738729,1739014,1739471,1739782,1740173,1741553	
chr3	1741696	1747474	1742583	1747377	-	Cre03.g153750.t1.2	Cre03.g153750.t1.2		1747212,1746945,1746292,1746043,1745768,1745312,1744017,1743597,1743252,1742909,1741696	1747474,1747054,1746424,1746176,1745824,1745452,1745085,1743733,1743346,1743048,1742703	
chr3	1747607	1750615	1747788	1750424	+	PIGK	Cre03.g153800.t1.1		1747607,1748241,1748454,1748678,1749018,1749201,1749436,1749812,1750148	1748050,1748323,1748517,1748811,1749058,1749301,1749577,1749941,1750615	PIG-K, cysteine protease of the C13 family; catalytic subunit of the GPI (glycosyl phosphatidyl inositol) transamidase multiprotein complex; performs the proteolytic cleavage of the C-terminal signal sequence of the precursor protein, followed by the formation of an amide bond between the protein and the ethanolamine phosphate of the GPI. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase
chr3	1750662	1753973	1750788	1753332	+	Cre03.g153850.t1.2	Cre03.g153850.t1.2		1750662,1751073,1751407,1751668,1751892,1752211,1752650,1752879,1753152	1750866,1751264,1751516,1751719,1752015,1752392,1752727,1753010,1753973	
chr3	1753976	1759421	1754011	1759221	-	FMO11	Cre03.g153900.t1.2		1759061,1758727,1758367,1758085,1757406,1757161,1756829,1756501,1756202,1755736,1755444,1755207,1754903,1754600,1753976	1759421,1758810,1758404,1758175,1757755,1757220,1756915,1756593,1756296,1755832,1755509,1755296,1755031,1754697,1754174	Flavin-containing monooxygenase, possibly a kyneurenine 3-monooxygenase
chr3	1759476	1769581	1760131	1768750	-	Cre03.g153950.t1.1	Cre03.g153950.t1.1		1769089,1768864,1768726,1768441,1768060,1767672,1767163,1766754,1765812,1765587,1765352,1764970,1764737,1764420,1764085,1763824,1763601,1763371,1762991,1762769,1762438,1761994,1761519,1761142,1760763,1759476	1769581,1768992,1768753,1768520,1768126,1767804,1767550,1766936,1766541,1765640,1765449,1765106,1764807,1764527,1764185,1763905,1763643,1763398,1763210,1762825,1762588,1762256,1761869,1761381,1760957,1760605	weakly similar to transient receptor potential ion channel
chr3	1769692	1772635	1770267	1772010	+	Cre03.g154000.t1.1	Cre03.g154000.t1.1		1769692,1769975,1770236,1770685,1771007,1771315,1771637,1771942	1769768,1770019,1770408,1770774,1771129,1771445,1771758,1772635	
chr3	1774172	1777597	1774942	1777070	+	Cre03.g154050.t1.2	Cre03.g154050.t1.2		1774172,1774643,1774942,1775434,1775763,1776156,1776525,1776915	1774410,1774681,1775149,1775523,1775885,1776286,1776646,1777597	
chr3	1778292	1781013	1778748	1780081	+	Cre03.g154100.t1.1	Cre03.g154100.t1.1		1778292,1779116,1779371,1779632,1779932	1778970,1779241,1779501,1779753,1781013	
chr3	1778292	1781013	1778763	1780081	+	Cre03.g154100.t2.1	Cre03.g154100.t2.1		1778292,1778738,1779116,1779371,1779632,1779932	1778580,1778970,1779241,1779501,1779753,1781013	
chr3	1781018	1787901	1781392	1787806	-	Cre03.g154150.t1.1	Cre03.g154150.t1.1		1787752,1787313,1787064,1786848,1786462,1786165,1785819,1785548,1785299,1785038,1784777,1784410,1784199,1783722,1783445,1783116,1782879,1782642,1782303,1782077,1781789,1781018	1787901,1787420,1787124,1786921,1786599,1786233,1785964,1785602,1785416,1785141,1784908,1784534,1784277,1784065,1783560,1783300,1782942,1782778,1782470,1782179,1781951,1781573	null-allele passenger mutation was isolated (PMID 29743196)
chr3	1787956	1790581	1788503	1790494	-	Cre03.g154200.t1.1	Cre03.g154200.t1.1		1790320,1789876,1789602,1787956	1790581,1790072,1789746,1789418	
chr3	1791156	1792871	1792360	1792792	-	Cre03.g154225.t1.1	Cre03.g154225.t1.1		1792624,1791156	1792871,1792531	
chr3	1792972	1801653	1793281	1799907	+	MAPKKK6	Cre03.g154250.t1.1		1792972,1793442,1793971,1794236,1794410,1794621,1794785,1795153,1795963,1796308,1796598,1796904,1797184,1797516,1797677,1798015,1798160,1798460,1798667,1798879,1799061,1799267,1799621	1793351,1793796,1794077,1794296,1794536,1794643,1794944,1795736,1796115,1796459,1796789,1797028,1797349,1797536,1797798,1798058,1798292,1798525,1798747,1798952,1799118,1799346,1801653	MAP3K6
chr3	1804282	1808763	1804627	1808433	+	Cre03.g154300.t1.1	Cre03.g154300.t1.1		1804282,1804593,1804913,1805196,1805532,1805972,1806275,1806567,1806807,1807025,1807361,1807789,1808043,1808263	1804480,1804726,1804976,1805364,1805680,1806105,1806328,1806632,1806874,1807144,1807451,1807848,1808109,1808763	
chr3	1808822	1811733	1808904	1810859	+	COX2A	Cre03.g154350.t1.2		1808822,1809047,1809212,1809341,1809487,1809813,1810221,1810444,1810734	1808961,1809124,1809241,1809407,1809629,1809923,1810298,1810609,1811733	In C. reinhardtii, subunit II is nuclear encoded with the N-terminal and C-terminal parts of the protein encoded by separate genes - N-terminus by COX2A and C-terminus by COX2B; respiratory complex IV; terminal oxidase of respiratory electron transport chain; heme-protein complex [PMID: 11094061; PMID: 11675593]
chr3	1811942	1817634	1812212	1816327	+	MFT15	Cre03.g154400.t1.2		1811942,1812613,1812867,1813079,1813725,1814639,1814852,1815235,1815612,1815946	1812381,1812719,1812963,1813598,1814469,1814707,1815001,1815370,1815742,1817634	Permease
chr3	1819311	1828343	1819797	1828300	-	CLASP	Cre03.g154425.t1.1		1828216,1828038,1827860,1827565,1827347,1826541,1826143,1825788,1825595,1825134,1824777,1823777,1823469,1823116,1822761,1822463,1821777,1821252,1820887,1820467,1820137,1819311	1828343,1828127,1827952,1827732,1827444,1827223,1826378,1826016,1825666,1825466,1824965,1824021,1823648,1823269,1822911,1822613,1822326,1821610,1821060,1820645,1820298,1819963	contains a HEAT-repeat domain, related to ARM repeat; similar to plant CLIP-associating-protein (cytoplasmic linker associated protein), probably involved in mitotic fidelity by regulating spindle and kinetochore function (PMID:16914514)
chr3	1819311	1824221	1819797	1824147	-	CLASP	Cre03.g154425.t2.1		1824113,1823777,1823469,1823116,1822761,1822463,1821777,1821252,1820887,1820467,1820137,1819311	1824221,1824021,1823648,1823269,1822911,1822613,1822326,1821610,1821060,1820645,1820298,1819963	contains a HEAT-repeat domain, related to ARM repeat; similar to plant CLIP-associating-protein (cytoplasmic linker associated protein), probably involved in mitotic fidelity by regulating spindle and kinetochore function (PMID:16914514)
chr3	1824268	1828343	1824681	1828300	-	CLASP	Cre03.g154425.t3.1		1828216,1828038,1827860,1827565,1827347,1826541,1826143,1825788,1825595,1825134,1824268	1828343,1828127,1827952,1827732,1827444,1827223,1826378,1826016,1825666,1825466,1824965	contains a HEAT-repeat domain, related to ARM repeat; similar to plant CLIP-associating-protein (cytoplasmic linker associated protein), probably involved in mitotic fidelity by regulating spindle and kinetochore function (PMID:16914514)
chr3	1828472	1833563	1828602	1833246	+	Cre03.g154500.t1.2	Cre03.g154500.t1.2		1828472,1829904,1830483,1831102,1831614,1831931,1832516,1832936	1829583,1830081,1830676,1831238,1831711,1832254,1832660,1833563	
chr3	1833566	1837661	1834365	1837580	-	PCR1	Cre03.g154550.t1.1		1837381,1837029,1836544,1836153,1835217,1834691,1833566	1837661,1837240,1836677,1836255,1835382,1834825,1834460	Putative pyrroline-5-carboxylate reductase (EC 1.5.1.2); similarity to wheat P5CR (GenBank AAW8298)
chr3	1837762	1841321	1837860	1840765	+	Cre03.g154600.t1.2	Cre03.g154600.t1.2		1837762,1838515,1838746,1839191,1839577,1840068,1840552,1840726	1838136,1838585,1838847,1839332,1839748,1840199,1840589,1841321	
chr3	1841336	1853781	1841539	1853669	-	Cre03.g154651.t1.1	Cre03.g154651.t1.1		1852619,1848849,1847922,1847583,1847256,1846840,1846385,1845953,1844662,1844204,1843861,1843540,1841717,1841336	1853781,1852472,1848791,1847806,1847355,1847073,1846627,1846227,1845757,1844377,1844004,1843605,1843379,1841556	
chr3	1853922	1858792	1854022	1858461	+	Cre03.g154700.t1.1	Cre03.g154700.t1.1		1853922,1854301,1854954,1855388,1855527,1856035,1856539,1857116,1857477,1857900,1858308	1854043,1854828,1855169,1855432,1855714,1856333,1856619,1857240,1857700,1857936,1858792	
chr3	1858889	1859809	1859022	1859206	+	Cre03.g154726.t1.1	Cre03.g154726.t1.1		1858889	1859809	
chr3	1859982	1863003	1860188	1862862	+	Cre03.g154750.t1.2	Cre03.g154750.t1.2		1859982,1860853,1861316,1862625	1860402,1861163,1862338,1863003	
chr3	1864262	1867713	1864469	1867194	+	Cre03.g154800.t1.2	Cre03.g154800.t1.2		1864262,1866185,1866855	1865897,1866286,1867713	
chr3	1870192	1874321	1870957	1874156	-	COQ4	Cre03.g154850.t1.1		1874286,1874091,1873685,1873103,1872577,1872071,1871081,1870192	1874321,1874180,1873817,1873212,1872709,1872229,1871629,1870957	ubiquinone biosynthesis protein COQ4 homolog
chr3	1874422	1880093	1874481	1879909	+	Cre03.g154900.t1.1	Cre03.g154900.t1.1		1874422,1874621,1878257,1878599,1879006	1874539,1877735,1878329,1878712,1880093	null-allele mutant was isolated (PMID 29743196)
chr3	1880141	1884713	1880277	1884265	+	Cre03.g154950.t1.2	Cre03.g154950.t1.2		1880141,1880469,1880899,1881244,1881623,1881927,1882158,1882654,1883029,1883451,1883731,1884052	1880344,1880542,1880970,1881400,1881681,1881984,1882291,1882773,1883057,1883527,1883771,1884713	
chr3	1885221	1896321	1885382	1894826	+	ISA1	Cre03.g155001.t1.1		1885221,1885715,1886232,1886623,1887346,1887661,1888021,1888459,1888868,1889271,1890002,1890346,1890803,1891120,1891377,1891774,1892151,1892532,1892840,1893268,1893628,1893994,1894310	1885519,1885901,1886330,1886704,1887410,1887783,1888168,1888591,1889012,1889398,1890103,1890464,1890942,1891165,1891503,1891873,1892267,1892680,1892972,1893438,1893800,1894087,1896321	Misplaced, loosely branched chains are trimmed by this DBE from a maturing structure to allow polysaccharide crystallization/  Posewitz et al. 24 [PMID: 1526933] showed that the STA7 locus corresponds to this gene. Mutants at this locus are starch-defi
chr3	1896713	1902630	1897154	1902596	-	Cre03.g155051.t1.1	Cre03.g155051.t1.1		1902203,1901745,1901128,1900628,1900158,1899697,1899332,1898777,1898486,1898151,1897675,1896713	1902630,1901906,1901340,1900768,1900313,1899768,1899403,1898877,1898554,1898216,1897846,1897388	Sphinganine-1-phosphate aldolase/lyase and pyridoxal phosphate-dependent decarboxylase (possible tyrosine decarboxylase activity).
chr3	1902731	1906012	1902858	1905341	+	Cre03.g155100.t1.2	Cre03.g155100.t1.2		1902731,1903125,1903344,1903611,1904663	1902942,1903220,1903487,1904477,1906012	null-allele mutant was isolated (PMID 29743196)
chr3	1906071	1911607	1906525	1910877	+	Cre03.g155150.t1.1	Cre03.g155150.t1.1		1906071,1906758,1907165,1907576,1907823,1908483,1908699,1908968,1909105,1909386,1910207,1910646	1906619,1906893,1907411,1907667,1908282,1908545,1908766,1909028,1909159,1909702,1910368,1911607	
chr3	1912010	1916030	1912564	1915785	-	CHM1	Cre03.g155200.t1.1		1915686,1915267,1914936,1914334,1913825,1913603,1913243,1912920,1912010	1916030,1915444,1915052,1914453,1913892,1913655,1913317,1913026,1912791	putative chorismate mutase (EC 5.4.99.5), eukaryotic type (AroQ), similar to the rice putative chorismate mutase (GenBank NP_916250); predicted mitochondrial by Target-P, but plastidic by homology
chr3	1916341	1921416	1916608	1920841	+	Cre03.g155250.t1.2	Cre03.g155250.t1.2		1916341,1917017,1917478,1917859,1918626,1918890,1919185,1919469,1919786,1920256	1916758,1917238,1917654,1918449,1918697,1919002,1919287,1919639,1920115,1921416	
chr3	1922313	1926910	1922840	1925897	+	PHC29	Cre03.g155300.t1.1		1922313,1922754,1922975,1923466,1923858,1925061	1922464,1922904,1923244,1923612,1924811,1926910	
chr3	1927266	1932452	1927618	1931542	+	Cre03.g155350.t1.2	Cre03.g155350.t1.2		1927266,1927865,1928284,1928648,1929042,1929437,1930143,1931009,1931456	1927677,1927974,1928484,1928886,1929177,1929895,1930774,1931228,1932452	
chr3	1932472	1934740	1933395	1934393	-	Cre03.g155400.t1.2	Cre03.g155400.t1.2		1934367,1934193,1933915,1932472	1934740,1934285,1933951,1933596	
chr3	1934921	1940292	1935072	1939208	+	Cre03.g155450.t1.1	Cre03.g155450.t1.1		1934921,1935839,1936176,1937046,1937787,1938511,1939103	1935297,1935961,1936789,1937571,1938235,1938613,1940292	
chr3	1940351	1941142	1940495	1941120	+	Cre03.g155500.t1.1	Cre03.g155500.t1.1		1940351,1940683,1941085	1940528,1940800,1941142	
chr3	1941191	1943932	1941231	1943703	+	Cre03.g155501.t1.2	Cre03.g155501.t1.2		1941191,1941599,1941781,1942157,1942659,1943110,1943404	1941481,1941641,1941879,1942366,1942910,1943207,1943932	
chr3	1943945	1945880	1944165	1945512	-	Cre03.g155527.t1.2	Cre03.g155527.t1.2		1945174,1944876,1943945	1945880,1945043,1944697	
chr3	1945948	1948620	1946506	1948516	-	DNJ18	Cre03.g155550.t1.2		1948404,1948019,1947763,1947559,1946919,1945948	1948620,1948128,1947861,1947641,1947347,1946783	DnaJ-like protein; perhaps targeted to chloroplast, since it contains N-terminal extension which is predicted by ChloroP to be cp transit peptide; contains N-terminal J-domain (pfam226), C-terminus shows weak homology with Desulfovibrio vulgaris Q727D7
chr3	1948667	1951040	1949147	1950983	-	Cre03.g155600.t1.1	Cre03.g155600.t1.1		1950902,1950692,1950416,1950051,1949681,1948667	1951040,1950750,1950470,1950188,1949845,1949495	
chr3	1951146	1953842	1951261	1953272	+	CLC1	Cre03.g155650.t1.2		1951146,1951574,1952662,1953059	1951285,1951939,1952745,1953842	Expressed Protein. Clathrin light chain, vesicle coat protein.
chr3	1953890	1971500	1954805	1970800	-	Cre03.g155700.t1.1	Cre03.g155700.t1.1		1970797,1969586,1969249,1968588,1968206,1967910,1967694,1967294,1967032,1966809,1966602,1965983,1965702,1965270,1965079,1964861,1964360,1964081,1963658,1963349,1963105,1962346,1962049,1961783,1961478,1961182,1961014,1960581,1960282,1958760,1958468,1958119,1957782,1957468,1957120,1956835,1956516,1956212,1955937,1955681,1955146,1953890	1971500,1970659,1969363,1968841,1968410,1968079,1967769,1967482,1967161,1966922,1966735,1966124,1965838,1965431,1965143,1964994,1964589,1964238,1963930,1963525,1963234,1962947,1962189,1961923,1961585,1961307,1961097,1960759,1960396,1960034,1958558,1958275,1957968,1957591,1957234,1956964,1956628,1956308,1956017,1955760,1955245,1955006	
chr3	1972170	1977210	1972790	1976803	-	PHC65	Cre03.g155750.t1.1		1976786,1976575,1976243,1975935,1975523,1975013,1973923,1973535,1972989,1972170	1977210,1976675,1976313,1976097,1975605,1975177,1974751,1973802,1973173,1972798	contains C-type lectin domain; null-allele mutant was isolated (PMID 29743196)
chr3	1977275	1980110	1978065	1979989	-	Cre03.g155800.t1.2	Cre03.g155800.t1.2		1979875,1979513,1979178,1978682,1977275	1980110,1979709,1979221,1978869,1978116	
chr3	1980271	1985732	1980313	1985100	+	Cre03.g155850.t1.1	Cre03.g155850.t1.1		1980271,1980749,1981122,1981496,1981997,1982385,1982812,1983199,1983765,1984092,1984315,1984584,1984998	1980578,1980882,1981241,1981605,1982063,1982541,1982999,1983537,1983875,1984151,1984407,1984685,1985732	
chr3	1985772	1997150	1987145	1997098	-	Cre03.g155900.t1.1	Cre03.g155900.t1.1		1996814,1996548,1996047,1995172,1994851,1994603,1992678,1988477,1988196,1987782,1985772	1997150,1996710,1996457,1995882,1995046,1994676,1994398,1992526,1988304,1987991,1987511	
chr3	1997411	1998562	1997882	1998069	+	Cre03.g155926.t1.1	Cre03.g155926.t1.1		1997411	1998562	
chr3	1998765	2003090	1999785	2002738	-	Cre03.g155950.t1.2	Cre03.g155950.t1.2		2002536,2002207,2001814,2001224,2001014,2000760,2000486,2000326,2000138,1998765	2003090,2002236,2002041,2001413,2001095,2000930,2000608,2000403,2000241,2000020	
chr3	2004211	2005462	2004328	2004536	+	Cre03.g155976.t1.1	Cre03.g155976.t1.1		2004211	2005462	
chr3	2005475	2013425	2006655	2013263	-	Cre03.g156000.t1.1	Cre03.g156000.t1.1		2013196,2012963,2011108,2007128,2006865,2005475	2013425,2013098,2012884,2010949,2006956,2006752	
chr3	2014104	2017164	2014541	2017107	-	Cre03.g156050.t1.2	Cre03.g156050.t1.2		2016985,2016702,2015865,2015301,2014986,2014104	2017164,2016870,2015960,2015498,2015087,2014664	
chr3	2017286	2024131	2017467	2023811	+	Cre03.g156100.t1.2	Cre03.g156100.t1.2		2017286,2017586,2018198,2018650,2019034,2019438,2019787,2020236,2020599,2021343,2021681,2022665,2023092,2023585	2017520,2017726,2018402,2018706,2019165,2019515,2019913,2020401,2021062,2021449,2022127,2022798,2023310,2024131	
chr3	2024196	2031807	2024261	2031310	+	HEL13	Cre03.g156150.t1.1		2024196,2025004,2025947,2026775,2027316,2027744,2028021,2028331,2028707,2028956,2029339,2029630,2030493,2030869	2024642,2025114,2026052,2026937,2027427,2027848,2028140,2028402,2028844,2029048,2029398,2030256,2030696,2031807	
chr3	2031809	2038155	2032163	2037971	-	Cre03.g156200.t1.1	Cre03.g156200.t1.1		2037797,2036982,2036640,2036406,2035406,2034219,2033551,2033090,2032830,2032585,2031809	2038155,2037424,2036767,2036482,2035490,2034274,2033772,2033234,2032928,2032691,2032421	
chr3	2031809	2038155	2032163	2037971	-	Cre03.g156200.t2.1	Cre03.g156200.t2.1		2037797,2036982,2036640,2036406,2035318,2034219,2033551,2033090,2032830,2032585,2031809	2038155,2037424,2036767,2036482,2035342,2034274,2033772,2033234,2032928,2032691,2032421	
chr3	2031809	2038155	2032163	2037971	-	Cre03.g156200.t3.1	Cre03.g156200.t3.1		2037797,2036982,2036640,2036406,2033551,2033090,2032830,2032585,2031809	2038155,2037424,2036767,2036482,2033772,2033234,2032928,2032691,2032421	
chr3	2038269	2040665	2038909	2040386	-	FAP186	Cre03.g156250.t1.2		2040529,2040245,2040072,2039742,2039305,2038269	2040665,2040409,2040145,2039859,2039444,2039078	
chr3	2041033	2042655	2041739	2042518	-	FAP405	Cre03.g156300.t1.2		2042398,2042016,2041033	2042655,2042282,2041856	
chr3	2042786	2049067	2042975	2048823	+	OPR15	Cre03.g156350.t1.2		2042786,2043737,2044427,2044812,2045350,2045756,2046238,2046546,2047100,2047500,2047723,2047961,2048257,2048634	2043466,2044049,2044575,2045081,2045524,2045950,2046336,2046832,2047265,2047580,2047754,2048069,2048358,2049067	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr3	2049069	2052355	2049487	2052184	-	Cre03.g156400.t1.2	Cre03.g156400.t1.2		2052095,2051514,2051189,2050783,2050419,2050023,2049069	2052355,2051928,2051301,2050835,2050559,2050105,2049745	
chr3	2052420	2054015	2052440	2053566	-	Cre03.g156450.t1.2	Cre03.g156450.t1.2		2053927,2053428,2052632,2052420	2054015,2053572,2053270,2052440	
chr3	2052420	2054015	2052440	2053645	-	Cre03.g156476.t1.1	Cre03.g156476.t1.1		2053428,2052632,2052420	2054015,2053270,2052440	
chr3	2054116	2056877	2054227	2056844	+	Cre03.g156500.t1.1	Cre03.g156500.t1.1		2054116,2054573,2054897,2055279,2055629,2056301,2056688	2054383,2054659,2055136,2055390,2056143,2056456,2056877	
chr3	2054116	2056877	2054227	2056844	+	Cre03.g156500.t2.1	Cre03.g156500.t2.1		2054116,2054573,2054897,2055279,2055629,2056301,2056688	2054383,2054659,2055136,2055390,2056092,2056456,2056877	
chr3	2056879	2064695	2057493	2064323	-	Cre03.g156550.t1.1	Cre03.g156550.t1.1		2064302,2063616,2063327,2062784,2062356,2060436,2060099,2059677,2059267,2058783,2058181,2056879	2064695,2063782,2063398,2063009,2062590,2062104,2060186,2059799,2059360,2059006,2058266,2057878	
chr3	2064980	2067824	2065118	2067035	+	Cre03.g156600.t1.2	Cre03.g156600.t1.2		2064980,2066061,2066513,2066804	2065625,2066158,2066573,2067824	
chr3	2067900	2073415	2068342	2073129	-	Cre03.g156650.t1.1	Cre03.g156650.t1.1		2072868,2072478,2072015,2071819,2071490,2071113,2070555,2069390,2068841,2067900	2073415,2072738,2072209,2071938,2071642,2071256,2070924,2069567,2069132,2068522	
chr3	2073870	2083925	2075248	2083704	-	FAP185	Cre03.g156700.t1.1		2083377,2081140,2080681,2080228,2079759,2079384,2079007,2078521,2078183,2077838,2077541,2075798,2073870	2083925,2083101,2080803,2080391,2079884,2079517,2079127,2078734,2078272,2077926,2077607,2077372,2075524	Conserved  Flagellar Associated Protein; center is Similar to nephrocystin 3
chr3	2084936	2090350	2085092	2089883	+	CCT5	Cre03.g156750.t1.2		2084936,2085321,2085700,2086257,2087332,2087672,2088051,2088505,2088885,2089227,2089570,2089826	2085140,2085471,2086018,2086356,2087496,2087827,2088182,2088682,2088991,2089347,2089646,2090350	T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCPE); subunit of cytosolic chaperonin complex; found in the flagellar proteome [PMID: 15998802]
chr3	2090536	2095421	2090888	2095243	+	Cre03.g156800.t1.2	Cre03.g156800.t1.2		2090536,2091380,2093147,2093824,2094394	2091093,2092923,2093646,2094187,2095421	
chr3	2097176	2107250	2097385	2105592	+	Cre03.g156850.t1.1	Cre03.g156850.t1.1		2097176,2097975,2098653,2098936,2099252,2099961,2100261,2101592,2102186,2103061,2103785	2097802,2098163,2098748,2099017,2099727,2100023,2101409,2101897,2102464,2103599,2107250	
chr3	2108155	2110445	2108190	2109976	+	LHCBM5	Cre03.g156900.t1.2		2108155,2108548,2108881,2109081,2109414,2109733	2108223,2108618,2108949,2109280,2109604,2110445	
chr3	2111156	2111925	2111432	2111879	-	QCR8	Cre03.g156950.t1.1		2111756,2111638,2111156	2111925,2111687,2111481	Subunit 8 of mitochondrial Complex III (ubiquinol:cytochrome c oxidoreductase)[PMID: 15710684]; (homolog of human QCRQ, bovine subunit VII and yeast QCR8)
chr3	2112556	2119747	2112649	2119265	+	ELG1	Cre03.g157000.t1.1		2112556,2113100,2113396,2114106,2114403,2114589,2114981,2115273,2115553,2115844,2116161,2116466,2116708,2117023,2117302,2117658,2117974,2118316,2118706,2119015	2112799,2113263,2113508,2114245,2114454,2114664,2115055,2115353,2115684,2115988,2116251,2116542,2116803,2117048,2117413,2117755,2118155,2118452,2118791,2119747	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr3	2119990	2127785	2120713	2127553	-	Cre03.g157050.t1.1	Cre03.g157050.t1.1		2127442,2126884,2126483,2126152,2125918,2125529,2125294,2124944,2124592,2124349,2124074,2123485,2122898,2121538,2120949,2119990	2127785,2127028,2126687,2126180,2125974,2125686,2125337,2125187,2124651,2124424,2124171,2123688,2123313,2122746,2121429,2120827	
chr3	2127925	2132116	2128223	2131347	+	Cre03.g157100.t1.1	Cre03.g157100.t1.1		2127925,2128391,2128523,2128680,2129003,2129268,2129697,2129926,2130221,2130480	2128304,2128448,2128575,2128814,2129098,2129456,2129798,2130078,2130325,2132116	
chr3	2132140	2136895	2132796	2135933	-	Cre03.g157150.t1.1	Cre03.g157150.t1.1		2136655,2136469,2136292,2135685,2135323,2134487,2134188,2133643,2132140	2136895,2136545,2136366,2136097,2135410,2135184,2134317,2133930,2133438	
chr3	2138087	2147985	2139774	2147749	-	Cre03.g157200.t1.1	Cre03.g157200.t1.1		2147551,2147333,2146986,2146680,2146359,2145706,2144981,2143901,2142937,2142428,2142040,2141489,2140843,2140433,2140208,2138087	2147985,2147469,2147109,2146845,2146531,2146216,2145537,2144836,2143558,2142755,2142151,2141857,2141302,2140557,2140289,2140004	
chr3	2148560	2159445	2150135	2159251	-	Cre03.g157250.t1.1	Cre03.g157250.t1.1		2159059,2158871,2158535,2158355,2158103,2157454,2156736,2156258,2154459,2153639,2153311,2152848,2151689,2151343,2151079,2150903,2150589,2148560	2159445,2158995,2158646,2158411,2158201,2157888,2157244,2156528,2156133,2154332,2153422,2153111,2152415,2151494,2151112,2150951,2150646,2150336	
chr3	2159534	2161545	2160243	2161266	-	CAF1	Cre03.g157300.t1.2		2160521,2159534	2161545,2160290	putative CAF1 (POP2), likely catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover.
chr3	2161836	2163847	2162003	2162561	+	Cre03.g157326.t1.1	Cre03.g157326.t1.1		2161836,2162373	2162118,2163847	
chr3	2164187	2168555	2165705	2168394	-	Cre03.g157350.t1.1	Cre03.g157350.t1.1		2168254,2167822,2167456,2166749,2166490,2166012,2164187	2168555,2168057,2167679,2167288,2166561,2166236,2165786	
chr3	2168610	2180275	2168727	2179890	-	Cre03.g157400.t1.2	Cre03.g157400.t1.2		2179721,2179394,2178777,2178138,2177731,2177391,2176912,2175905,2175256,2174751,2174160,2173651,2173230,2172952,2172700,2172255,2169567,2168610	2180275,2179499,2178958,2178304,2177835,2177489,2177076,2176033,2175363,2174876,2174238,2173781,2173379,2173010,2172787,2172371,2172143,2169402	
chr3	2180646	2182873	2181012	2181910	+	Cre03.g157426.t1.1	Cre03.g157426.t1.1		2180646,2181553,2181910	2181094,2181745,2182873	
chr3	2183001	2185275	2183664	2184783	-	Cre03.g157450.t1.2	Cre03.g157450.t1.2		2184866,2184460,2184079,2183001	2185275,2184788,2184148,2183667	
chr3	2183001	2185246	2183664	2184783	-	Cre03.g157450.t2.1	Cre03.g157450.t2.1		2184866,2184460,2184079,2183001	2185246,2184784,2184148,2183667	
chr3	2185376	2188100	2185839	2187887	+	Cre03.g157475.t1.1	Cre03.g157475.t1.1		2185376,2185557,2185804,2186585,2186753,2186928	2185487,2185617,2186251,2186590,2186797,2188100	
chr3	2188166	2190857	2188287	2188670	+	Cre03.g157501.t1.1	Cre03.g157501.t1.1		2188166,2188362	2188291,2190857	
chr3	2196299	2198359	2197778	2198241	-	Cre03.g157526.t1.1	Cre03.g157526.t1.1		2198114,2196299	2198359,2197837	
chr3	2213027	2216079	2215275	2215826	-	Cre03.g157550.t1.2	Cre03.g157550.t1.2		2215796,2213027	2216079,2215476	
chr3	2222310	2223521	2222862	2223229	+	Cre03.g157564.t1.2	Cre03.g157564.t1.2		2222310	2223521	
chr3	2223559	2231729	2225749	2231107	-	Cre03.g157600.t1.1	Cre03.g157600.t1.1		2228395,2226778,2226610,2226195,2223559	2231729,2228019,2226659,2226370,2225934	
chr3	2235070	2238611	2235368	2238410	+	Cre03.g157650.t1.1	Cre03.g157650.t1.1		2235070,2236014,2236286,2236569,2237018,2237287,2238086	2235878,2236047,2236383,2236787,2237146,2237808,2238611	
chr3	2238614	2240089	2239386	2239887	-	COX5C	Cre03.g157700.t1.2		2239734,2238614	2240089,2239524	Cytochrome c oxidase, subunit 5c (mitochondrial precursor)(homolog of complex V subunit 5c of A. thaliana (At3g62400, At2g47380); PMID: 15710684. No counterpart in fungi or animals.
chr3	2240190	2241681	2240257	2241260	+	Cre03.g157725.t1.1	Cre03.g157725.t1.1		2240190,2240622	2240546,2241681	Presents motifs found on quinoproteins whose redox cofactor is a pyrrolo-quinoline quinone (PQQ); closely related to linked PPQ2 gene; most similar to bacterial quinoproteins; no orthologue found in Volvox
chr3	2242410	2251121	2242572	2250630	+	Cre03.g157751.t1.1	Cre03.g157751.t1.1		2242410,2243087,2243430,2243715,2243897,2244197,2244776,2244961,2245354,2245530,2245836,2246202,2246613,2246925,2247167,2247544,2247907,2248060,2248385,2248596,2248836,2249189,2249538,2249719,2249951	2242743,2243167,2243526,2243737,2244000,2244360,2244815,2245014,2245414,2245583,2245928,2246400,2246718,2247012,2247289,2247718,2247932,2248171,2248511,2248652,2248961,2249270,2249607,2249809,2251121	
chr3	2255585	2258889	2256731	2258823	-	TRX2	Cre03.g157800.t1.1		2258665,2258495,2258161,2257953,2257697,2257276,2255585	2258889,2258594,2258226,2258000,2257790,2257361,2256929	conserved expressed thioredoxin-like protein, unusual active site WCNAC
chr3	2258974	2260599	2260256	2260488	-	TRXL1	Cre03.g157850.t1.2		2258974	2260599	conserved expressed thioredoxin-like protein, unusual active site WCNAC
chr3	2261640	2268551	2261735	2267705	+	Cre03.g157900.t1.1	Cre03.g157900.t1.1		2261640,2262025,2262189,2262576,2262935,2264253,2264486,2264784,2265014,2265428,2265945,2266176,2266521,2266799,2267525	2261875,2262090,2262438,2262772,2264117,2264365,2264690,2264895,2265309,2265532,2266069,2266347,2266652,2267320,2268551	null-allele mutant was isolated (PMID 29743196)
chr3	2268564	2272469	2268637	2272095	-	Cre03.g157950.t1.1	Cre03.g157950.t1.1		2272029,2271598,2271354,2271003,2270492,2270152,2269644,2269308,2268564	2272469,2271843,2271436,2271173,2270639,2270270,2269865,2269465,2269092	
chr3	2272727	2276164	2272763	2275576	+	GSA1	Cre03.g158000.t1.2		2272727,2273011,2273656,2274076,2274508,2274743,2275086,2275355	2272895,2273268,2273878,2274239,2274585,2274923,2275220,2276164	Glutamate-1-semialdehyde aminotransferase (GSA-AT); Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor; PMID: 16126849; PMID: 15890644; PMID: 12228605; PMID: 10872234; PMID: 10080695; PMID: 8989881; PMID: 8155881; PMID: 1985889; predicted chloroplast targeting sequence amino acids 1-29 by ChloroP
chr3	2276270	2285151	2276768	2283417	+	Cre03.g158050.t1.1	Cre03.g158050.t1.1		2276270,2276982,2277149,2277647,2277936,2281225,2282029,2282254,2282542,2282850	2276892,2277055,2277235,2277832,2280998,2281799,2282110,2282388,2282640,2285151	
chr3	2285154	2286969	2285173	2286702	-	Cre03.g158100.t1.2	Cre03.g158100.t1.2		2286582,2286073,2285643,2285417,2285154	2286969,2286231,2285734,2285507,2285281	
chr3	2287095	2295581	2287179	2295302	+	Cre03.g158150.t1.1	Cre03.g158150.t1.1		2287095,2287327,2287531,2287902,2288369,2288600,2289062,2289399,2289687,2290295,2290587,2290907,2291280,2291685,2292032,2292232,2292578,2293036,2293280,2293667,2294213,2294569,2294861	2287227,2287359,2287660,2288020,2288448,2288816,2289187,2289472,2289846,2290381,2290687,2290990,2291445,2291779,2292146,2292387,2292727,2293167,2293387,2294045,2294334,2294646,2295581	
chr3	2295584	2300579	2296497	2300192	-	HDA2	Cre03.g158200.t1.2		2299904,2299522,2299157,2298782,2298004,2297730,2297342,2296920,2295584	2300579,2299632,2299255,2298852,2298391,2297813,2297455,2297012,2296632	Class III RPD3 type protein of the histone deacetylases (RPD3/HDA1 superfamily); ChromDB HDA3407
chr3	2300700	2306967	2300900	2306420	+	SECY2	Cre03.g158250.t1.2		2300700,2301259,2301761,2302148,2302605,2302983,2303496,2303932,2304356,2304888,2305259,2305510,2305959,2306336	2301127,2301337,2301878,2302275,2302730,2303172,2303588,2304050,2304583,2305012,2305340,2305656,2306030,2306967	Hypothetical Conserved Protein. Thylakoid membrane protein translocase. Involved in translocating plastid stromal proteins into the thylakoid lumen.
chr3	2307020	2315985	2307705	2314598	+	PTK7	Cre03.g158300.t1.1		2307020,2307634,2307936,2309634,2310006,2310560,2310944,2311156,2311318,2311654,2312075,2312782,2313079,2313187,2313698,2313981,2314306	2307334,2307866,2309507,2309851,2310344,2310826,2311014,2311201,2311448,2311887,2312642,2312859,2313113,2313567,2313838,2314162,2315985	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr3	2316130	2320951	2316585	2320583	+	Cre03.g158350.t1.2	Cre03.g158350.t1.2		2316130,2317032,2317352,2317650,2318113,2318606,2318920,2319147,2319457,2319750,2320214,2320406	2316802,2317117,2317420,2317784,2318244,2318695,2319015,2319290,2319559,2320018,2320258,2320951	
chr3	2321020	2328721	2321251	2328398	+	FAP218	Cre03.g158400.t1.2		2321020,2321749,2322068,2322313,2322532,2322850,2323103,2323561,2323998,2324368,2324812,2325173,2325495,2325785,2326093,2326379,2326621,2326982,2327275,2327562,2327975	2321392,2321889,2322144,2322373,2322659,2322951,2323301,2323730,2324112,2324503,2324951,2325307,2325575,2325886,2326200,2326435,2326772,2327054,2327331,2327693,2328721	Flagellar Associated Protein, found in the flagellar proteome
chr3	2328764	2332069	2329193	2331712	-	Cre03.g158450.t1.2	Cre03.g158450.t1.2		2331852,2331663,2331289,2330986,2330512,2330394,2330108,2329820,2329571,2328764	2332069,2331742,2331429,2331200,2330644,2330413,2330170,2329922,2329701,2329307	null-allele mutant was isolated (PMID 29743196)
chr3	2332244	2340369	2332619	2340257	-	Cre03.g158464.t1.1	Cre03.g158464.t1.1		2340124,2339616,2339280,2338924,2338645,2336380,2333863,2333420,2332933,2332244	2340369,2339809,2339369,2339075,2338718,2338523,2336209,2333680,2333200,2332812	
chr3	2340963	2350806	2341134	2349444	+	Cre03.g158500.t1.1	Cre03.g158500.t1.1		2340963,2341775,2342337,2342880,2343256,2343762,2344129,2344676,2344989,2345342,2345888,2346251,2346509,2347132,2347510,2347801,2348093,2348499,2348977,2349303	2341437,2341912,2342455,2343006,2343342,2343902,2344200,2344767,2345046,2345441,2345966,2346289,2346647,2347242,2347620,2347878,2348220,2348631,2349081,2350806	
chr3	2351901	2365622	2352245	2364681	+	Cre03.g158550.t1.2	Cre03.g158550.t1.2		2351901,2352486,2353361,2354252,2354562,2354963,2355420,2355778,2356125,2356616,2356887,2357108,2357363,2357761,2358394,2358682,2359065,2359488,2359785,2360116,2360540,2360973,2361577,2362100,2362476,2362950,2363437,2363798	2352334,2353163,2354037,2354376,2354708,2355109,2355482,2355921,2356304,2356703,2356931,2357136,2357485,2357985,2358478,2358788,2359215,2359543,2359892,2360352,2360761,2361400,2361898,2362184,2362738,2363249,2363537,2365622	SNF2-related helicase with Chromo DNA-binding domain.   ChromDB CHR343
chr3	2365771	2369156	2366095	2368892	+	Cre03.g158600.t1.1	Cre03.g158600.t1.1		2365771,2366813,2367117,2367395,2367728,2368081,2368270,2368721	2366524,2366869,2367185,2367490,2367835,2368158,2368377,2369156	
chr3	2369211	2372219	2369306	2372066	+	Cre03.g158650.t1.2	Cre03.g158650.t1.2		2369211,2369803,2371706	2369666,2371509,2372219	
chr3	2372671	2375532	2372805	2375077	+	Cre03.g158700.t1.2	Cre03.g158700.t1.2		2372671,2374600,2374930	2374410,2374749,2375532	
chr3	2375537	2381019	2376414	2380985	-	HEL14	Cre03.g158750.t1.1		2380607,2380122,2379714,2379378,2378987,2378788,2378560,2377809,2377458,2377200,2376916,2375537	2381019,2380382,2379863,2379458,2379055,2378838,2378661,2377949,2377614,2377285,2377007,2376559	
chr3	2381131	2384202	2381348	2383855	+	Cre03.g158800.t1.1	Cre03.g158800.t1.1		2381131,2381580,2381815,2381983,2382275,2382607,2383092,2383395,2383771	2381444,2381669,2381829,2382073,2382384,2382805,2383171,2383514,2384202	
chr3	2381131	2384202	2381348	2383855	+	Cre03.g158800.t2.1	Cre03.g158800.t2.1		2381131,2381580,2381983,2382275,2382607,2383092,2383395,2383771	2381444,2381669,2382073,2382384,2382805,2383171,2383514,2384202	
chr3	2381131	2384202	2381348	2383855	+	Cre03.g158800.t3.1	Cre03.g158800.t3.1		2381131,2381580,2381815,2382005,2382275,2382607,2383092,2383395,2383771	2381444,2381669,2381833,2382073,2382384,2382805,2383171,2383514,2384202	
chr3	2384205	2388895	2384699	2388765	-	Cre03.g158850.t1.1	Cre03.g158850.t1.1		2388465,2388187,2387481,2386040,2385700,2385449,2384205	2388895,2388360,2387993,2387317,2385858,2385541,2385245	
chr3	2389011	2392603	2389075	2391962	+	DLA2	Cre03.g158900.t1.2		2389011,2389642,2390243,2390703,2391119,2391637	2389525,2389791,2390518,2390850,2391254,2392603	Dihydrolipoamide acetyltransferase (EC 2.3.1.12), E2 component of pyruvate dehydrogenase complex, probably plastidic, based on Target-P prediction and similarity to Arabidopsis LTA2 (GenBank NP_189215)
chr3	2392755	2394734	2393266	2394516	-	Cre03.g158950.t1.1	Cre03.g158950.t1.1		2394460,2394289,2393530,2392755	2394734,2394381,2393680,2393356	
chr3	2394831	2403504	2395162	2403213	+	Cre03.g159000.t1.1	Cre03.g159000.t1.1		2394831,2396448,2396756,2397423,2397968,2398220,2398772,2399171,2400550,2401007,2402232,2402583,2403057	2396314,2396563,2396990,2397614,2398054,2398477,2399038,2400355,2400783,2402077,2402443,2402814,2403504	
chr3	2403539	2412640	2404868	2412473	-	Cre03.g159016.t2.1	Cre03.g159016.t2.1		2412323,2411997,2411751,2411464,2411270,2410973,2410788,2410612,2409289,2409047,2408592,2408189,2407149,2406929,2406612,2406407,2406192,2405948,2405733,2405322,2403539	2412640,2412143,2411828,2411557,2411301,2411104,2410806,2410640,2409360,2409086,2408810,2408470,2408053,2406937,2406803,2406439,2406251,2406029,2405773,2405525,2404955	
chr3	2402996	2412640	2404868	2412473	-	Cre03.g159016.t1.1	Cre03.g159016.t1.1		2412323,2411997,2411751,2411464,2411270,2410973,2410788,2410612,2409289,2409047,2408592,2408189,2407149,2406929,2406612,2406407,2406192,2405948,2405733,2405322,2402996	2412640,2412143,2411828,2411557,2411301,2411104,2410806,2410640,2409360,2409086,2408810,2408470,2408053,2406937,2406803,2406439,2406251,2406029,2405773,2405525,2404955	
chr3	2403539	2409080	2404868	2408749	-	Cre03.g159016.t3.1	Cre03.g159016.t3.1		2409047,2408592,2408189,2407149,2406929,2406612,2406407,2406192,2405948,2405733,2405322,2403539	2409080,2408810,2408470,2408053,2406937,2406803,2406439,2406251,2406029,2405773,2405525,2404955	
chr3	2410515	2412640	2410596	2412473	-	Cre03.g159016.t4.1	Cre03.g159016.t4.1		2412323,2411997,2411751,2411464,2411270,2410973,2410788,2410515	2412640,2412143,2411828,2411557,2411301,2411104,2410806,2410640	
chr3	2412741	2414412	2412867	2413286	+	Cre03.g159083.t1.2	Cre03.g159083.t1.2		2412741,2413013	2412882,2414412	
chr3	2414511	2417055	2414783	2416579	+	Cre03.g159100.t1.2	Cre03.g159100.t1.2		2414511,2415561,2416019,2416288	2415054,2415782,2416107,2417055	
chr3	2418801	2427490	2420485	2427199	-	Cre03.g159150.t1.1	Cre03.g159150.t1.1		2427064,2426760,2426438,2426075,2425618,2425360,2425219,2425040,2424823,2424650,2424105,2423702,2422581,2422368,2422051,2421854,2421639,2421445,2421242,2420800,2418801	2427490,2426906,2426515,2426168,2425649,2425494,2425237,2425068,2424894,2424689,2424320,2423986,2423488,2422376,2422242,2421886,2421698,2421526,2421282,2421003,2420533	
chr3	2427811	2437712	2427985	2437294	+	UBC8	Cre03.g159200.t1.1		2427811,2428169,2428611,2429102,2429511,2430292,2430705,2430988,2431264,2431488,2431763,2432300,2432744,2433166,2433513,2433723,2434109,2434325,2434495,2434681,2434982,2435447,2435692,2436096,2436496,2436744,2437120	2428032,2428377,2428942,2429315,2430076,2430530,2430798,2431052,2431304,2431551,2431894,2432432,2432945,2433404,2433575,2433833,2434192,2434353,2434556,2434788,2435061,2435512,2435810,2436207,2436635,2436894,2437712	putative ubiquitin-protein ligase (E3, HECT domain)
chr3	2437793	2441852	2437835	2441828	+	Cre03.g159254.t1.2	Cre03.g159254.t1.2		2437793,2438214,2438354,2438492,2438715,2439057,2439325,2439577,2439944,2440188,2440584,2440886,2441209,2441616,2441799	2438104,2438223,2438384,2438505,2438767,2439100,2439437,2439728,2440020,2440452,2440758,2441031,2441326,2441685,2441852	
chr3	2437793	2441852	2438493	2441828	+	Cre03.g159254.t2.1	Cre03.g159254.t2.1		2437793,2438214,2438354,2438492,2438715,2439057,2439325,2439577,2439944,2440188,2440584,2440886,2441209,2441616,2441799	2438104,2438223,2438384,2438505,2438767,2439100,2439437,2439728,2440020,2440452,2440758,2441031,2441326,2441685,2441852	
chr3	2441855	2444575	2443096	2444313	-	Cre03.g159300.t1.1	Cre03.g159300.t1.1		2444294,2444121,2443747,2443325,2441855	2444575,2444202,2443909,2443444,2443198	
chr3	2444701	2457942	2444858	2456663	+	Cre03.g159350.t1.1	Cre03.g159350.t1.1		2444701,2445151,2445474,2445859,2446522,2447068,2447705,2448048,2448789,2450812,2451647,2452950,2454710,2455910	2445003,2445322,2445628,2446316,2446925,2447508,2447870,2448557,2450660,2451372,2452780,2454548,2455651,2457942	
chr3	2458303	2462698	2458387	2462148	+	Cre03.g159400.t2.1	Cre03.g159400.t2.1		2458303,2458846,2459252,2459648,2459919,2460267,2460765,2461420,2461718,2461943	2458678,2458920,2459356,2459761,2460064,2460384,2460961,2461480,2461815,2462698	
chr3	2458051	2462698	2458387	2462148	+	Cre03.g159400.t1.2	Cre03.g159400.t1.2		2458051,2458846,2459252,2459648,2459919,2460267,2460765,2461420,2461718,2461943	2458678,2458920,2459356,2459761,2460064,2460384,2460961,2461480,2461815,2462698	
chr3	2463780	2468115	2464205	2467631	+	ODC1	Cre03.g159500.t1.2		2463780,2464190,2464634,2465038,2465274,2465367,2466007,2466244,2466614,2467550	2463957,2464397,2464838,2465144,2465299,2465745,2466141,2466480,2467420,2468115	Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine, first step in polyamine biosynthesis(PMID: 11950995); fully active, based on conservation of important residues (PMID: 16847581), in particular a conserved lysine residue which is known, in mouse ODC, to be the site of attachment of the pyridoxal-phosphate group, a stretch of three consecutive glycine residues that has been proposed to be part of a substrate-binding region; this is ODC1a, not the most abundant of the 4 splicing variants, but the only one that shows full coding capacity; the published cDNA (PMID: 15646386) has an indel and is not fully coding; regulation of ODC1 alternative splicing may be used to couple polyamine synthesis and cell division
chr3	2463780	2468115	2464205	2467631	+	ODC1	Cre03.g159500.t2.1		2463780,2464190,2464634,2465038,2466244,2466614,2467550	2463957,2464397,2464838,2465144,2466480,2467420,2468115	Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine, first step in polyamine biosynthesis(PMID: 11950995); fully active, based on conservation of important residues (PMID: 16847581), in particular a conserved lysine residue which is known, in mouse ODC, to be the site of attachment of the pyridoxal-phosphate group, a stretch of three consecutive glycine residues that has been proposed to be part of a substrate-binding region; this is ODC1a, not the most abundant of the 4 splicing variants, but the only one that shows full coding capacity; the published cDNA (PMID: 15646386) has an indel and is not fully coding; regulation of ODC1 alternative splicing may be used to couple polyamine synthesis and cell division
chr3	2466191	2468115	2466258	2467631	+	ODC1	Cre03.g159500.t5.1		2466191,2466614,2467550	2466480,2467420,2468115	Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine, first step in polyamine biosynthesis(PMID: 11950995); fully active, based on conservation of important residues (PMID: 16847581), in particular a conserved lysine residue which is known, in mouse ODC, to be the site of attachment of the pyridoxal-phosphate group, a stretch of three consecutive glycine residues that has been proposed to be part of a substrate-binding region; this is ODC1a, not the most abundant of the 4 splicing variants, but the only one that shows full coding capacity; the published cDNA (PMID: 15646386) has an indel and is not fully coding; regulation of ODC1 alternative splicing may be used to couple polyamine synthesis and cell division
chr3	2463780	2466142	2464205	2465382	+	ODC1	Cre03.g159500.t3.1		2463780,2464190,2464634,2465038,2465367	2463957,2464397,2464838,2465144,2466142	Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine, first step in polyamine biosynthesis(PMID: 11950995); fully active, based on conservation of important residues (PMID: 16847581), in particular a conserved lysine residue which is known, in mouse ODC, to be the site of attachment of the pyridoxal-phosphate group, a stretch of three consecutive glycine residues that has been proposed to be part of a substrate-binding region; this is ODC1a, not the most abundant of the 4 splicing variants, but the only one that shows full coding capacity; the published cDNA (PMID: 15646386) has an indel and is not fully coding; regulation of ODC1 alternative splicing may be used to couple polyamine synthesis and cell division
chr3	2463780	2466142	2464205	2465157	+	ODC1	Cre03.g159500.t4.1		2463780,2464190,2464634,2465038	2463957,2464397,2464838,2466142	Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine, first step in polyamine biosynthesis(PMID: 11950995); fully active, based on conservation of important residues (PMID: 16847581), in particular a conserved lysine residue which is known, in mouse ODC, to be the site of attachment of the pyridoxal-phosphate group, a stretch of three consecutive glycine residues that has been proposed to be part of a substrate-binding region; this is ODC1a, not the most abundant of the 4 splicing variants, but the only one that shows full coding capacity; the published cDNA (PMID: 15646386) has an indel and is not fully coding; regulation of ODC1 alternative splicing may be used to couple polyamine synthesis and cell division
chr3	2468431	2479690	2469176	2479536	-	Cre03.g159550.t1.1	Cre03.g159550.t1.1		2479388,2479078,2478626,2478216,2477945,2477625,2475869,2474933,2474110,2473742,2473230,2472834,2468431	2479690,2479211,2478903,2478480,2478031,2477738,2477486,2475740,2474788,2473937,2473504,2473073,2472707	
chr3	2468431	2479690	2469176	2479536	-	Cre03.g159550.t2.1	Cre03.g159550.t2.1		2479388,2479078,2478626,2478216,2477945,2477625,2475869,2474933,2474110,2473742,2473230,2472834,2468431	2479690,2479211,2478903,2478480,2478031,2477738,2477486,2475713,2474788,2473937,2473504,2473073,2472707	
chr3	2479841	2481660	2479885	2480801	+	Cre03.g159581.t1.2	Cre03.g159581.t1.2		2479841,2480376	2480093,2481660	
chr3	2479841	2481660	2479885	2480347	+	Cre03.g159581.t2.1	Cre03.g159581.t2.1		2479841,2480339	2480093,2481660	
chr3	2481755	2485350	2483983	2485109	-	Cre03.g159600.t1.2	Cre03.g159600.t1.2		2485245,2481755	2485350,2485116	
chr3	2485965	2492538	2486870	2491702	-	EFG6	Cre03.g159650.t1.2		2492416,2491603,2491290,2490977,2490634,2490321,2489968,2489639,2489414,2488782,2488258,2487941,2487616,2487251,2485965	2492538,2492025,2491430,2491147,2490817,2490487,2490114,2489770,2489512,2488920,2488443,2488071,2487790,2487446,2487045	GTP-binding protein, similar to GP-1, elongation factor Tu
chr3	2492587	2495600	2493107	2495248	-	Cre03.g159700.t1.1	Cre03.g159700.t1.1		2495138,2494836,2494530,2494074,2493889,2493584,2492587	2495600,2494974,2494559,2494366,2493981,2493757,2493303	
chr3	2495732	2500852	2495956	2500018	+	VPS36	Cre03.g159750.t1.2		2495732,2496182,2496397,2496719,2496997,2497631,2497857,2498596,2499002,2499386,2499673	2496040,2496241,2496573,2496770,2497475,2497690,2498428,2498816,2499156,2499487,2500852	Expressed Protein. Similar to VPS36, a UBA and VPS36-domain protein, component of ESCRT-II complex, involved in ubiquitin-mediated internalization into multi-vesicular bodies (late endosomes).
chr3	2501206	2505855	2502608	2505640	-	Cre03.g159800.t1.1	Cre03.g159800.t1.1		2505190,2505010,2504719,2504176,2503633,2503343,2501206	2505855,2505117,2504835,2504607,2504025,2503447,2503211	
chr3	2506881	2511122	2507647	2510504	+	Cre03.g159851.t1.1	Cre03.g159851.t1.1		2506881,2508256,2508687,2508932,2509197,2509336,2509637,2509832,2510374	2508130,2508399,2508795,2509081,2509248,2509465,2509690,2510151,2511122	
chr3	2511171	2514763	2511258	2514240	+	Cre03.g159900.t1.1	Cre03.g159900.t1.1		2511171,2512021,2512749,2513123,2513679	2511621,2512135,2512872,2513255,2514763	
chr3	2514765	2521340	2515052	2521074	-	Cre03.g159950.t1.1	Cre03.g159950.t1.1		2521038,2520534,2520176,2519725,2519043,2518574,2518274,2517883,2517316,2516830,2516182,2515401,2514765	2521340,2520728,2520323,2519895,2519165,2518797,2518361,2517974,2517467,2516956,2516514,2515875,2515267	
chr3	2521451	2528572	2522175	2527847	+	HDA3	Cre03.g160000.t1.2		2521451,2522155,2525771,2526205,2526758	2521740,2525603,2526031,2526577,2528572	Histone deacetylase, class II RPD3 type, ChromDB HDA3402
chr3	2521451	2528572	2522175	2527847	+	HDA3	Cre03.g160000.t2.1		2521451,2522155,2525771,2526208,2526758	2521740,2525603,2526031,2526577,2528572	Histone deacetylase, class II RPD3 type, ChromDB HDA3402
chr3	2528575	2532282	2528922	2532172	-	FAP184	Cre03.g160050.t1.2		2532151,2531983,2531762,2531397,2531131,2530554,2530098,2529689,2529259,2528575	2532282,2532036,2531834,2531629,2531238,2530726,2530282,2529918,2529471,2529105	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr3	2532381	2535322	2532431	2534540	+	Cre03.g160100.t1.2	Cre03.g160100.t1.2		2532381,2532664,2532886,2533259,2533693,2534048,2534363	2532473,2532720,2532960,2533452,2533873,2534233,2535322	
chr3	2535575	2538710	2536166	2538468	-	Cre03.g160150.t1.2	Cre03.g160150.t1.2		2538255,2537924,2537568,2537275,2536911,2536685,2535575	2538710,2538131,2537778,2537431,2536961,2536816,2536424	
chr3	2541192	2543835	2542013	2543750	-	PFH12	Cre03.g160200.t1.2		2543645,2543456,2543002,2542540,2541192	2543835,2543557,2543300,2542782,2542158	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_1125; contains C-terminal ShK domain
chr3	2541192	2543835	2542230	2543750	-	PFH12	Cre03.g160200.t2.1		2543645,2543456,2543002,2542540,2541192	2543835,2543557,2543300,2542782,2542243	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Identified by Keskiaho et al. (27) [PMID: 172223] as v2 C_1125; contains C-terminal ShK domain
chr3	2547338	2553792	2547550	2552780	+	Cre03.g160250.t1.1	Cre03.g160250.t1.1		2547338,2547793,2551113,2551475	2547572,2550959,2551331,2553792	
chr3	2555078	2556589	2555152	2555883	+	RAMP4	Cre03.g160300.t1.1		2555078,2555304,2555477,2555817	2555155,2555390,2555530,2556589	
chr3	2556628	2567037	2557169	2566274	-	ANK7	Cre03.g160350.t1.2		2566210,2565543,2565070,2561393,2560743,2560247,2559993,2559774,2559465,2558354,2558030,2556628	2567037,2566048,2565411,2564834,2561255,2560563,2560139,2559858,2559620,2559261,2558149,2557838	protein of unknown function with ankyrin repeats
chr3	2567738	2574599	2568176	2573474	+	SAC1	Cre03.g160400.t1.2		2567738,2568423,2568777,2569436,2569698,2569964,2570311,2570720,2571065,2571405,2571720,2571961,2572267,2572667,2573048,2573354	2568208,2568569,2568965,2569532,2569760,2570153,2570469,2570911,2571141,2571542,2571811,2572038,2572427,2572833,2573140,2574599	Regulator of sulfur deficiency responses and sodium/sulfate co-transporter; putative membrane protein belonging to the SLC13A transporter family; candidate sulfate sensor; NCBI accessions U47541 (mRNA), Q39593 and AAB08008 (protein); PMID: 8641280. Note that a 1 bp deletion in the mRNA sequence in accession U47541 led to prediction of an amino acid sequence lacking 187 amino acids from N-terminus
chr3	2574601	2578987	2575013	2578881	-	KAT2	Cre03.g160450.t1.2		2578853,2578605,2578348,2577892,2577375,2577073,2575538,2574601	2578987,2578735,2578465,2578118,2577614,2577190,2576778,2575307	Microtubule-severing protein katanin, p80 subunit; non-motile pf15 mutant in this gene lacks central pair microtubules
chr3	2579138	2586091	2579289	2585325	+	TSK1	Cre03.g160500.t1.2		2579138,2579446,2579911,2580387,2580677,2581804,2582132,2582355,2582791,2583156,2584753,2585112	2579372,2579503,2580178,2580480,2580866,2581929,2582215,2582501,2582952,2583385,2584873,2586091	Lysine-tRNA ligase; may also be an aspartyl-tRNA synthetase
chr3	2586138	2591579	2586243	2590835	+	MTP4	Cre03.g160550.t1.1		2586138,2586855,2587136,2587482,2587701,2587991,2588247,2588559,2588807,2590835	2586656,2586988,2587251,2587573,2587776,2588077,2588366,2588633,2590012,2591579	Putative Mn transporter, CDF family, related to plant Mn transporters, PMID: 15710683
chr3	2591628	2597363	2592109	2595112	+	Cre03.g160600.t1.1	Cre03.g160600.t1.1		2591628,2592268,2592491,2592789,2592959,2593156	2592133,2592406,2592645,2592832,2593004,2597363	
chr3	2597538	2610969	2597792	2610544	+	Cre03.g160650.t1.2	Cre03.g160650.t1.2		2597538,2598329,2598685,2599170,2599513,2600400,2600730,2601288,2601808,2602377,2603371,2603769,2604068,2604492,2604946,2605266,2605619,2606185,2606834,2607142,2607472,2607767,2608136,2608502	2598050,2598445,2598888,2599265,2600188,2600609,2601212,2601551,2602191,2603225,2603505,2603894,2604331,2604709,2605111,2605415,2606044,2606633,2606883,2607206,2607582,2607940,2608342,2610969	
chr3	2597538	2610969	2597792	2610544	+	Cre03.g160650.t2.1	Cre03.g160650.t2.1		2597538,2598329,2598685,2599170,2599513,2600730,2601288,2601808,2602377,2603371,2603769,2604068,2604492,2604946,2605266,2605619,2606185,2606834,2607142,2607472,2607767,2608136,2608502	2598050,2598445,2598888,2599265,2600188,2601212,2601551,2602191,2603225,2603505,2603894,2604331,2604709,2605111,2605415,2606044,2606633,2606883,2607206,2607582,2607940,2608342,2610969	
chr3	2610972	2614977	2611823	2614311	-	Cre03.g160700.t1.1	Cre03.g160700.t1.1		2614706,2613349,2613000,2612727,2612387,2610972	2614977,2614316,2613159,2612831,2612543,2612233	
chr3	2615383	2620277	2616534	2619939	-	MTP3	Cre03.g160750.t1.1		2619864,2619183,2618769,2618464,2618185,2617912,2617607,2617270,2617115,2616923,2615383	2620277,2619586,2618902,2618579,2618276,2617987,2617693,2617336,2617167,2616997,2616777	Putative Mn transporter, CDF family, related to plant Mn transporters, PMID: 15710683; next to MTP2
chr3	2620332	2625177	2621164	2624538	-	MTP2	Cre03.g160800.t1.2		2624463,2623920,2623643,2623338,2623064,2622873,2622386,2622159,2622005,2621813,2620332	2625177,2624332,2623776,2623453,2623155,2622948,2622472,2622225,2622057,2621887,2621683	Putative Mn transporter, CDF family, related to plant Mn transporters, PMID: 15710683; next to MTP3
chr3	2625378	2629627	2627133	2629235	-	Cre03.g160850.t1.1	Cre03.g160850.t1.1		2628281,2627841,2627523,2625378	2629627,2628047,2627669,2627373	
chr3	2629738	2642553	2629925	2641955	+	Cre03.g160900.t1.2	Cre03.g160900.t1.2		2629738,2630361,2631667,2635747,2636911,2637376,2637676,2638004,2638535,2639086,2639789,2640205,2640744,2641041,2641432,2641688	2629940,2631468,2635586,2636782,2637221,2637522,2637760,2638225,2638626,2639424,2639866,2640378,2640830,2641166,2641518,2642553	
chr3	2642562	2642977	2642733	2642932	-	Cre03.g160950.t1.1	Cre03.g160950.t1.1		2642562	2642977	
chr3	2643042	2656377	2643658	2656255	-	Cre03.g160953.t1.2	Cre03.g160953.t1.2		2655953,2655600,2655137,2654686,2654085,2653816,2653290,2652972,2652553,2652108,2651626,2651103,2650532,2649898,2649294,2648694,2648282,2647961,2647533,2647161,2646739,2646072,2645106,2644401,2643042	2656377,2655755,2655275,2654790,2654439,2653942,2653417,2653090,2652687,2652278,2651778,2651201,2650673,2650308,2649756,2649126,2648455,2648126,2647648,2647262,2646896,2646399,2645712,2644906,2644060	
chr3	2656618	2661229	2656715	2660840	+	Cre03.g161000.t1.1	Cre03.g161000.t1.1		2656618,2657182,2657385,2657940,2658647,2659991,2660354,2660718	2656849,2657255,2657542,2658452,2658892,2660113,2660426,2661229	Adenosine/AMP deaminase, metal-dependent hydrolase
chr3	2661232	2663947	2662052	2663729	-	Cre03.g161050.t1.2	Cre03.g161050.t1.2		2663648,2663480,2663196,2662957,2662570,2661232	2663947,2663547,2663339,2663050,2662644,2662253	ts-lethal mutant was isolated (PMID 29743196)
chr3	2665111	2666504	2665430	2665869	+	Cre03.g161081.t1.1	Cre03.g161081.t1.1		2665111,2665383,2665733	2665249,2665564,2666504	
chr3	2667638	2671639	2667942	2671365	+	Cre03.g161100.t1.1	Cre03.g161100.t1.1		2667638,2668082,2668395,2668835,2669374,2669929,2670387	2667953,2668148,2668656,2669236,2669693,2670141,2671639	
chr3	2671641	2686777	2672822	2686299	-	PHC63	Cre03.g161150.t1.1		2686537,2686192,2685323,2685139,2684811,2684587,2674497,2674192,2674002,2673689,2673367,2671641	2686777,2686335,2685548,2685187,2684982,2684620,2674562,2674267,2674054,2673883,2673471,2673212	
chr3	2687264	2694137	2688321	2693516	-	CYP748A1	Cre03.g161250.t1.2		2693970,2693363,2692841,2692494,2691212,2690807,2690332,2689824,2689450,2688819,2688655,2687264	2694137,2693568,2693002,2692600,2692278,2690907,2690476,2689997,2689567,2689269,2688704,2688442	cytochrome P450, most like CYP4 family sequences in animals.
chr3	2695368	2704500	2696116	2703138	+	Cre03.g161301.t1.1	Cre03.g161301.t1.1		2695368,2696091,2696345,2697247,2697524,2697730,2698147,2698459,2698892,2699227,2699729,2700306,2700574,2700904,2701139,2701419,2701705,2702415	2695696,2696141,2697056,2697354,2697596,2697777,2698304,2698636,2699008,2699575,2699944,2700433,2700678,2701007,2701226,2701495,2702221,2704500	
chr3	2704572	2706587	2704760	2705814	-	Cre03.g161350.t1.1	Cre03.g161350.t1.1		2704572	2706587	
chr3	2706652	2710057	2706934	2709991	-	Cre03.g161363.t1.2	Cre03.g161363.t1.2		2709804,2709558,2708063,2706652	2710057,2709730,2709412,2707903	
chr3	2710110	2714307	2710583	2714271	-	MAA7	Cre03.g161400.t1.2		2713995,2713781,2713245,2712851,2712394,2711941,2711525,2711125,2710110	2714307,2713866,2713407,2712958,2712528,2712087,2711685,2711238,2710740	Tryptophan synthase beta subunit [PMID: 9625698]; the enzyme is a tetramer of two alpha dna two beta subunits; the beta subunit performs final reaction L-serine + 1-(indol-3-yl)glycerol 3-phosphate => L-tryptophan + glyceraldehyde 3-phosphate; reduction in MAA7 function results in resistance to 5-methyl anthranilic acid and 5'-fluorindole
chr3	2714372	2716037	2714500	2715537	-	Cre03.g161450.t1.2	Cre03.g161450.t1.2		2715735,2715420,2715189,2715001,2714736,2714372	2716037,2715592,2715280,2715093,2714871,2714596	
chr3	2716158	2718624	2716294	2718408	+	Cre03.g161500.t1.1	Cre03.g161500.t1.1		2716158,2716442,2716591,2716707,2716976,2717176,2717348,2717591,2717896,2718188	2716367,2716514,2716636,2716793,2717044,2717202,2717439,2717756,2718068,2718624	
chr3	2718652	2724917	2719290	2724809	-	FAP55	Cre03.g161550.t1.2		2724686,2724455,2723751,2723364,2723064,2722308,2721922,2721519,2720718,2720385,2719890,2719529,2718652	2724917,2724556,2724130,2723571,2723236,2722923,2722107,2721683,2721383,2720537,2720236,2719691,2719377	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr3	2725018	2730382	2725107	2729742	+	Cre03.g161578.t1.1	Cre03.g161578.t1.1		2725018,2725208,2725599,2725850,2726303,2728588,2728915,2729226,2729694	2725137,2725299,2725701,2725987,2726367,2728759,2729067,2729315,2730382	
chr3	2725018	2726549	2725107	2726529	+	Cre03.g161578.t2.1	Cre03.g161578.t2.1		2725018,2725208,2725599,2725850,2726303,2726501	2725137,2725299,2725701,2725987,2726367,2726549	
chr3	2725018	2726139	2725107	2726091	+	Cre03.g161578.t3.1	Cre03.g161578.t3.1		2725018,2725208,2725599,2725850,2726046	2725137,2725299,2725701,2725987,2726139	
chr3	2728578	2730382	2728729	2729742	+	Cre03.g161578.t4.1	Cre03.g161578.t4.1		2728578,2728915,2729226,2729694	2728759,2729067,2729315,2730382	
chr3	2726141	2728477	2727446	2727895	-	Cre03.g161606.t1.1	Cre03.g161606.t1.1		2728152,2728002,2727825,2726141	2728477,2728049,2727898,2727694	
chr3	2726552	2728477	2727446	2727895	-	Cre03.g161606.t2.1	Cre03.g161606.t2.1		2728152,2728002,2727825,2726552	2728477,2728049,2727898,2727694	
chr3	2730717	2733784	2731256	2733604	-	Cre03.g161750.t1.1	Cre03.g161750.t1.1		2733508,2733050,2732648,2732224,2731854,2731622,2730717	2733784,2733151,2732836,2732314,2732054,2731647,2731469	contains DUF2296 domain
chr3	2733881	2763492	2734010	2762967	+	Cre03.g161800.t1.2	Cre03.g161800.t1.2		2733881,2734311,2734760,2735320,2736487,2737225,2737679,2739364,2739789,2740133,2740464,2740960,2742222,2742749,2743920,2744567,2744979,2745593,2746004,2747414,2749862,2754872,2755757,2758395,2758936,2759369,2759687,2761783,2762207,2762550	2734094,2734546,2735030,2736231,2736942,2737476,2738995,2739588,2739878,2740230,2740587,2741290,2742505,2743620,2744146,2744764,2745400,2745798,2747168,2749695,2754614,2755552,2758094,2758723,2759142,2759479,2761501,2761961,2762336,2763492	ts-lethal mutant was isolated (PMID 29743196)
chr3	2763495	2765520	2764257	2765500	-	Cre03.g161850.t1.1	Cre03.g161850.t1.1		2765426,2764964,2763495	2765520,2765219,2764809	
chr3	2765575	2770680	2765594	2770369	-	Cre03.g161900.t1.1	Cre03.g161900.t1.1		2770137,2769228,2768695,2767550,2766179,2765743,2765575	2770680,2769260,2768742,2767869,2767349,2765900,2765594	
chr3	2771021	2776820	2771931	2776654	-	Cre03.g161950.t1.1	Cre03.g161950.t1.1		2776624,2776342,2776098,2775066,2774648,2773787,2773371,2773057,2772647,2771021	2776820,2776470,2776199,2775263,2774758,2774352,2773528,2773225,2772851,2772495	
chr3	2776965	2778380	2777488	2777950	-	Cre03.g161976.t1.1	Cre03.g161976.t1.1		2777915,2776965	2778380,2777735	
chr3	2779682	2783682	2779779	2782803	+	Cre03.g162000.t1.2	Cre03.g162000.t1.2		2779682,2780074,2780299,2780822,2781237,2781690,2781920,2782284,2782616	2779850,2780116,2780447,2780918,2781354,2781784,2782088,2782395,2783682	Identified as MOT21, found in organisms with motile cilia by comparative genomic analysis, but most similar to higher plant homologues and not likely to be involved in motility
chr3	2783685	2788720	2783979	2788484	-	HDA4	Cre03.g162050.t1.1		2788337,2787930,2787244,2786498,2786109,2785640,2784937,2783685	2788720,2788097,2787800,2786921,2786296,2785851,2785160,2784669	Histone deacetylase.  ChromDB HDA3405
chr3	2788851	2791002	2788918	2790789	+	PIMT2	Cre03.g162100.t1.2		2788851,2789387,2789708,2790001,2790351,2790681	2789254,2789507,2789804,2790152,2790499,2791002	Hypothetical conserved protein similar to Protein-L-isoaspartate(D-aspartate) O-methyltransferase proteins. One of two proteins with predicted Asp-Methyltransferase activity (see PIMT1)
chr3	2791531	2801266	2792805	2800527	+	Cre03.g162150.t1.1	Cre03.g162150.t1.1		2791531,2792119,2792666,2794292,2794958,2795679,2796114,2797003,2798981	2791957,2792163,2794002,2794621,2795385,2795871,2796680,2798867,2801266	
chr3	2801550	2803522	2801684	2803180	+	Cre03.g162200.t1.2	Cre03.g162200.t1.2		2801550,2802517,2803129	2802227,2802909,2803522	
chr3	2803701	2807011	2803727	2806469	+	CGL35	Cre03.g162250.t1.2		2803701,2804080,2804445,2805003,2805581,2806056,2806391	2803943,2804228,2804629,2805121,2805721,2806181,2807011	
chr3	2807125	2812180	2807448	2812074	-	Cre03.g162300.t1.2	Cre03.g162300.t1.2		2811936,2811222,2810737,2810234,2809691,2809428,2808945,2808464,2808067,2807125	2812180,2811361,2810818,2810369,2809845,2809475,2809061,2808562,2808208,2807693	possibly a 17-beta hydroxysteroid/estradiol dehydrogenase
chr3	2812841	2823539	2813631	2822931	+	Cre03.g162333.t1.1	Cre03.g162333.t1.1		2812841,2815522,2816341,2816753,2817188,2817717,2818066,2818476,2820102,2820482,2821107,2821599,2822097,2822439,2822736	2815008,2815710,2816493,2816903,2817285,2817804,2818184,2819816,2820244,2820629,2821250,2821698,2822183,2822545,2823539	
chr3	2823681	2829682	2823756	2829325	+	Cre03.g162366.t1.1	Cre03.g162366.t1.1		2823681,2824080,2824398,2824711,2825070,2825355,2825828,2826897,2827329,2827855	2823902,2824234,2824477,2824782,2825193,2825428,2826499,2827128,2827612,2829682	
chr3	2829731	2838272	2830115	2837902	+	Cre03.g162400.t1.1	Cre03.g162400.t1.1		2829731,2830878,2831611,2832119,2832663,2833171,2833687,2834116,2834778,2835329,2836027,2836594	2830640,2831117,2831797,2832246,2832749,2833338,2833755,2834227,2835010,2835699,2836360,2838272	
chr3	2838331	2843682	2838572	2843662	+	Cre03.g162450.t1.1	Cre03.g162450.t1.1		2838331,2838780,2839416,2839789,2840236,2841154,2841552,2842119,2842497	2838681,2838865,2839542,2839937,2840910,2841265,2841694,2842273,2843682	
chr3	2843685	2847020	2845127	2846623	-	Cre03.g162500.t1.1	Cre03.g162500.t1.1		2846444,2845704,2843685	2847020,2845960,2845510	
chr3	2847833	2850574	2848063	2850057	+	Cre03.g162550.t1.1	Cre03.g162550.t1.1		2847833,2848062,2848288,2848825,2849451,2849895	2847956,2848125,2848492,2848950,2849597,2850574	5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase
chr3	2850591	2853530	2851000	2853479	-	PGP3	Cre03.g162601.t1.1		2853085,2852687,2852041,2851572,2850591	2853530,2852787,2852191,2851690,2851168	
chr3	2853631	2858847	2853689	2857927	+	Cre03.g162650.t1.2	Cre03.g162650.t1.2		2853631,2854422,2855080,2855390,2855893,2856260,2857088,2857813	2854037,2854565,2855141,2855483,2856027,2856468,2857625,2858847	
chr3	2858961	2877481	2859098	2877430	+	Cre03.g162701.t1.1	Cre03.g162701.t1.1		2858961,2859277,2860199,2861764,2862225,2862598,2863095,2863901,2864403,2864673,2864989,2865378,2865907,2866448,2866981,2867377,2867665,2868268,2868593,2869413,2870801,2871606,2872659,2873526,2873994,2875676,2876241,2877198	2859164,2859437,2861614,2861994,2862444,2862759,2863571,2864014,2864552,2864827,2865089,2865601,2866187,2866589,2867122,2867438,2867760,2868364,2869278,2870621,2871480,2872265,2873286,2873858,2875573,2876114,2876995,2877481	SWI2/SNF2-like protein, ChromDB CHR347; Chromatin remodeling complex subunit R
chr3	2877615	2883480	2879824	2883134	-	Cre03.g162750.t1.2	Cre03.g162750.t1.2		2883322,2883086,2882851,2882528,2882293,2881840,2881355,2880954,2880119,2877615	2883480,2883141,2882928,2882612,2882342,2882038,2881557,2881181,2880653,2879910	
chr3	2885264	2887871	2885883	2887503	-	LCI1	Cre03.g162800.t1.2		2887818,2887412,2887179,2886733,2886433,2886129,2885264	2887871,2887531,2887270,2886931,2886503,2886209,2885928	Low-CO2-inducible gene encoding 21 kDa transmembrane protein; SOSUI prediction: signal peptide in N-terminal end and 3 transmembrane helices. Regulated by CO2 through MYB-transcription factor LCR1 [PMID: 15155888] and CCM1 [PMID: 15235119]
chr3	2890833	2893133	2890971	2892202	+	FAP292	Cre03.g162850.t1.1		2890833,2891191,2891519,2892041	2891031,2891265,2891702,2893133	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr3	2893470	2910785	2894809	2910445	-	Cre03.g162900.t1.1	Cre03.g162900.t1.1		2910251,2909228,2908806,2908393,2907951,2907385,2906147,2905842,2905477,2905123,2904787,2904528,2904154,2903623,2903181,2902724,2902423,2902078,2901790,2899197,2898722,2898328,2896672,2895516,2895218,2893470	2910785,2909294,2908919,2908503,2908064,2907522,2906279,2905981,2905593,2905284,2904883,2904596,2904322,2903778,2903426,2902773,2902496,2902146,2901893,2901507,2898937,2898395,2898144,2896349,2895347,2894884	null-allele mutant was isolated (PMID 29743196)
chr3	2911176	2916218	2911430	2915505	+	Cre03.g162950.t1.2	Cre03.g162950.t1.2		2911176,2911688,2912002,2912330,2912594,2912898,2913128,2913348,2913574,2914284,2914616,2915358	2911554,2911846,2912141,2912446,2912748,2913008,2913249,2913424,2914095,2914448,2915179,2916218	null-allele mutant was isolated (PMID 29743196)
chr3	2916220	2919605	2916365	2919203	-	POC5	Cre03.g163000.t1.2		2919432,2918990,2918541,2918287,2918054,2917629,2917365,2917081,2916220	2919605,2919321,2918774,2918363,2918138,2917837,2917456,2917188,2916943	Found in basal body proteome [PMID: 15964273]. Human homolog FLJ35779 gene product found in centrosome proteome [Andersen].
chr3	2919739	2928177	2919839	2927807	+	Cre03.g163050.t1.1	Cre03.g163050.t1.1		2919739,2920092,2920525,2920980,2921293,2921638,2921855,2922257,2922693,2922987,2923270,2923753,2924239,2924617,2924998,2925361,2925963,2926292,2926684,2927032,2927445	2919887,2920338,2920676,2921087,2921364,2921651,2921984,2922351,2922765,2923093,2923333,2924047,2924386,2924771,2925170,2925513,2926157,2926563,2926834,2927263,2928177	
chr3	2928226	2937907	2928325	2936940	+	Cre03.g163150.t1.2	Cre03.g163150.t1.2		2928226,2928590,2928824,2929430,2929887,2930223,2930551,2930883,2931202,2931575,2932018,2932315,2932669,2933087,2933646,2933943,2934452,2935087,2935465,2936031,2936475	2928412,2928665,2928975,2929537,2929958,2930366,2930681,2930940,2931372,2931781,2932078,2932462,2932883,2933363,2933742,2934104,2934726,2935237,2935717,2936107,2937907	
chr3	2938280	2948365	2938934	2947606	-	Cre03.g163200.t1.1	Cre03.g163200.t1.1		2948342,2948137,2947883,2947297,2946953,2946513,2946186,2945638,2945018,2944499,2944000,2943269,2942449,2941936,2940535,2938280	2948365,2948227,2947972,2947780,2947033,2946665,2946360,2945881,2945271,2944671,2944166,2943794,2942930,2942079,2941636,2938934	
chr3	2948420	2950965	2948816	2950927	-	Cre03.g163250.t1.1	Cre03.g163250.t1.1		2950924,2950346,2949965,2948420	2950965,2950528,2950132,2949578	
chr3	2951020	2953135	2951355	2952325	-	Cre03.g163266.t1.2	Cre03.g163266.t1.2		2952509,2952226,2951020	2953135,2952354,2952033	
chr3	2953689	2959385	2954389	2959352	-	CDT1	Cre03.g163300.t1.2		2959075,2958874,2958490,2958128,2957605,2956699,2956318,2953689	2959385,2958977,2958578,2958272,2957865,2957436,2956473,2955958	Functions with CDC6 to activate replication origins
chr3	2959486	2961917	2959551	2961622	+	PAN5	Cre03.g163350.t1.2		2959486	2961917	2-dehydropantoate 2-reductase, KPR, the second enzyme in the pantothenate biosynthesis pathway
chr3	2961966	2963521	2962245	2963086	+	Cre03.g163376.t1.2	Cre03.g163376.t1.2		2961966,2962217,2962619	2962059,2962459,2963521	
chr3	2963576	2966327	2963791	2965177	+	Cre03.g163400.t1.1	Cre03.g163400.t1.1		2963576,2963966,2964938	2963813,2964679,2966327	
chr3	2966330	2969095	2966346	2969057	-	Cre03.g163450.t1.2	Cre03.g163450.t1.2		2968948,2968553,2968223,2967981,2967571,2967168,2966717,2966330	2969095,2968717,2968337,2968065,2967690,2967332,2966788,2966526	
chr3	2969146	2975185	2970443	2974668	-	CGLD21	Cre03.g163500.t1.2		2974957,2974497,2974114,2973758,2973375,2972448,2969146	2975185,2974679,2974329,2973874,2973482,2973047,2972096	
chr3	2975240	2978035	2975534	2977801	-	Cre03.g163550.t1.2	Cre03.g163550.t1.2		2977697,2977349,2976942,2976451,2976018,2975240	2978035,2977414,2977033,2976609,2976152,2975761	
chr3	2978326	2986808	2978494	2986231	+	Cre03.g163600.t1.2	Cre03.g163600.t1.2		2978326,2978928,2979540,2980028,2980246,2985953	2978653,2979296,2979827,2980109,2985690,2986808	
chr3	2986820	2989425	2987280	2989282	-	Cre03.g163650.t1.2	Cre03.g163650.t1.2		2989257,2988300,2987741,2986820	2989425,2989069,2988182,2987519	
chr3	2989616	2993815	2989961	2993787	-	Cre03.g163700.t1.2	Cre03.g163700.t1.2		2993661,2991184,2989616	2993815,2993457,2990204	
chr3	2993880	2995255	2994147	2995198	-	Cre03.g163750.t1.2	Cre03.g163750.t1.2		2994993,2993880	2995255,2994656	
chr3	2995406	3004007	2995825	3003675	+	Cre03.g163800.t1.1	Cre03.g163800.t1.1		2995406,2998009,3000311,3000791,3001618,3002338,3002781,3003652	2997921,3000014,3000618,3001278,3001972,3002535,3003378,3004007	
chr3	3004076	3014461	3004184	3013511	+	Cre03.g163850.t1.2	Cre03.g163850.t1.2		3004076,3004439,3004913,3005214,3005720,3006204,3006546,3006871,3007216,3007693,3008089,3008478,3009368,3009676,3010224,3010571,3010905,3011423,3011855,3012245,3013142	3004233,3004560,3005034,3005283,3005796,3006303,3006589,3006926,3007301,3007737,3008166,3009055,3009443,3009758,3010356,3010623,3010995,3011446,3011973,3012809,3014461	
chr3	3014516	3019626	3014675	3017486	+	PWR3	Cre03.g163900.t1.1		3014516,3015138,3015420,3015880,3016443	3014912,3015275,3015708,3016215,3019626	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr3	3019759	3023867	3020627	3023742	-	CDO2	Cre03.g163950.t1.1		3023661,3023395,3023079,3022696,3022168,3021546,3019759	3023867,3023580,3023183,3022785,3022494,3021923,3020699	
chr3	3024480	3027894	3025706	3027837	-	ANR1	Cre03.g164000.t1.2		3027750,3027167,3026764,3026587,3026200,3024480	3027894,3027376,3026926,3026628,3026385,3025720	Thylakoid membrane protein [PMID: 17078018]; involved in the response to anaerobiosis; interacts with PETO protein
chr3	3028036	3034737	3028271	3034721	+	KIN15-1	Cre03.g164050.t1.1		3028036,3028538,3028773,3028903,3029247,3029601,3029897,3030244,3030581,3030989,3031376,3031637,3031956,3032282,3033372,3033674,3033900,3034262,3034570	3028442,3028696,3028818,3029040,3029463,3029734,3030076,3030434,3030849,3031151,3031537,3031855,3032156,3033229,3033520,3033713,3034061,3034419,3034737	kinesin-15 family, a new family separated from the standard polyphyletic kinesin-12 family (PMID: 16481395)
chr3	3028036	3034457	3028271	3034424	+	KIN15-1	Cre03.g164050.t2.1		3028036,3028538,3028773,3028903,3029247,3029601,3029897,3030244,3030581,3030989,3031376,3031637,3031956,3032282,3033372,3033674,3033900,3034262	3028442,3028696,3028818,3029040,3029463,3029734,3030076,3030434,3030849,3031151,3031537,3031855,3032156,3033229,3033520,3033713,3034061,3034457	kinesin-15 family, a new family separated from the standard polyphyletic kinesin-12 family (PMID: 16481395)
chr3	3034460	3036555	3035855	3036501	-	LSM7	Cre03.g164101.t1.1		3036413,3036265,3036087,3034460	3036555,3036336,3036139,3035972	gi 16072073 gb BI874069.1 BI874069, small nuclear riboprotein, U6 sm-like protein, LSm7, snRNP splicing; (SMP6c)
chr3	3036676	3039147	3036773	3038865	+	Cre03.g164150.t1.1	Cre03.g164150.t1.1		3036676,3037363,3037873,3038353,3038747	3037181,3037562,3038003,3038497,3039147	
chr3	3039166	3041259	3039556	3041125	-	Cre03.g164200.t1.1	Cre03.g164200.t1.1		3040996,3040721,3040582,3040272,3039961,3039166	3041259,3040836,3040630,3040404,3040069,3039749	
chr3	3041386	3050759	3041555	3050072	+	FAP262	Cre03.g164250.t1.1		3041386,3041647,3041900,3042404,3042808,3043142,3047028,3047669,3048273,3048577,3048869	3041569,3041721,3042242,3042619,3042993,3046793,3047244,3047822,3048343,3048730,3050759	Flagellar Associated Protein, similar to protein kinases, found in the flagellar proteome
chr3	3050800	3053315	3051537	3053253	-	Cre03.g164300.t1.2	Cre03.g164300.t1.2		3053220,3053061,3052643,3052309,3051947,3050800	3053315,3053137,3052706,3052375,3052035,3051603	
chr3	3053370	3058325	3054072	3058158	-	Cre03.g164350.t1.1	Cre03.g164350.t1.1		3058042,3057505,3057022,3056475,3056039,3055710,3053370	3058325,3057603,3057090,3056611,3056139,3055802,3054132	
chr3	3058436	3061162	3058521	3061015	+	Cre03.g164400.t1.2	Cre03.g164400.t1.2		3058436,3058876,3059115,3059524,3059917,3060534,3061015	3058740,3058928,3059351,3059655,3060357,3060607,3061162	null-allele mutant was isolated (PMID 29743196)
chr3	3061316	3068845	3062409	3068639	-	Cre03.g164450.t1.1	Cre03.g164450.t1.1		3067076,3066097,3065481,3065052,3064092,3063270,3061316	3068845,3066809,3065857,3065290,3064880,3063731,3062538	
chr3	3068946	3072317	3069003	3072209	+	Cre03.g164500.t1.2	Cre03.g164500.t1.2		3068946,3069625,3070226,3070910,3071459,3071927	3069418,3069806,3070311,3070997,3071617,3072317	
chr3	3072366	3077201	3072468	3076068	+	Cre03.g164550.t1.2	Cre03.g164550.t1.2		3072366,3072617,3072981,3075960	3072531,3072639,3073056,3077201	BolA-like domain protein, with homology to Saccharomyces Fra2p
chr3	3077353	3084080	3078486	3083999	-	PMA3	Cre03.g164600.t1.2		3083893,3083737,3083041,3082611,3082009,3081489,3081159,3080700,3080335,3079386,3079144,3077353	3084080,3083819,3083159,3082911,3082398,3081728,3081291,3080983,3080574,3080191,3079222,3078951	
chr3	3085438	3091105	3086570	3090973	-	MOT1	Cre03.g164650.t1.2		3090744,3090446,3090155,3089834,3089526,3089119,3088719,3088321,3087604,3085438	3091105,3090520,3090198,3089950,3089612,3089271,3088795,3088459,3088081,3087421	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr3	3091232	3095487	3091355	3094829	+	Cre03.g164700.t1.2	Cre03.g164700.t1.2		3091232,3091622,3093017,3093651,3094050,3094682	3091529,3091947,3093185,3093712,3094161,3095487	
chr3	3096186	3099410	3097037	3097369	+	Cre03.g164750.t1.2	Cre03.g164750.t1.2		3096186,3097036,3097340	3096488,3097263,3099410	
chr3	3099951	3105785	3100937	3105759	-	Cre03.g164800.t1.2	Cre03.g164800.t1.2		3105699,3105214,3104446,3103691,3103376,3102486,3101975,3101516,3099951	3105785,3105303,3104646,3103994,3103468,3103159,3102178,3101689,3101225	
chr3	3099951	3105785	3100937	3105759	-	Cre03.g164800.t2.1	Cre03.g164800.t2.1		3105699,3105214,3104509,3103691,3103376,3102486,3101975,3101516,3099951	3105785,3105303,3104646,3103994,3103468,3103159,3102178,3101689,3101225	
chr3	3105886	3108807	3107055	3108572	+	Cre03.g164850.t1.2	Cre03.g164850.t1.2		3105886,3107054,3107575,3107670,3108224	3106164,3107284,3107599,3107853,3108807	
chr3	3111653	3120235	3112736	3120163	-	Cre03.g164900.t1.1	Cre03.g164900.t1.1		3120080,3119929,3119771,3119534,3118960,3118543,3117455,3116995,3116225,3115470,3115155,3114271,3113772,3113307,3111653	3120235,3119995,3119851,3119692,3119055,3118709,3117617,3117084,3116425,3115773,3115247,3114938,3113975,3113480,3113024	
chr3	3111653	3120235	3112736	3120163	-	Cre03.g164900.t2.1	Cre03.g164900.t2.1		3120080,3119929,3119771,3119534,3118960,3118543,3117455,3116995,3116288,3115470,3115155,3114271,3113772,3113307,3111653	3120235,3119995,3119851,3119692,3119055,3118709,3117617,3117084,3116425,3115773,3115247,3114938,3113975,3113480,3113024	
chr3	3121126	3124422	3121296	3123891	+	SRS3	Cre03.g164950.t1.1		3121126,3121517,3121961,3122509,3122904,3123407,3123762	3121391,3121595,3122080,3122639,3123242,3123590,3124422	
chr3	3124596	3132878	3124796	3132218	+	LPA1	Cre03.g165000.t1.2		3124596,3125022,3126089,3126560,3126957,3127590,3128134,3128752,3129262,3129635,3130066,3130693,3131203,3131697,3132116	3124853,3125138,3126241,3126707,3127084,3127685,3128238,3128937,3129393,3129735,3130187,3130843,3131349,3131826,3132878	
chr3	3133026	3144943	3133145	3143501	+	PMA4	Cre03.g165050.t1.2		3133026,3133401,3133922,3134151,3134495,3135019,3135368,3135705,3136288,3136687,3137062,3137438,3137707,3138066,3138981,3139489,3139973,3140218,3140684,3141080,3141669,3141984,3142610,3143333	3133263,3133607,3134004,3134269,3134678,3135135,3135547,3135914,3136434,3136776,3137206,3137517,3137760,3138206,3139220,3139585,3140004,3140322,3140821,3141349,3141737,3142119,3143031,3144943	
chr3	3144971	3146515	3145562	3146461	-	PSAI	Cre03.g165100.t1.2		3146311,3145826,3144971	3146515,3145925,3145633	Chloroplast precursor
chr3	3147396	3150607	3147508	3148769	+	Cre03.g165150.t1.1	Cre03.g165150.t1.1		3147396,3147798,3148103,3148466	3147555,3147948,3148312,3150607	
chr3	3150971	3151876	3151180	3151732	-	Cre03.g165169.t1.1	Cre03.g165169.t1.1		3151642,3150971	3151876,3151306	
chr3	3155407	3157577	3155524	3157325	+	Cre03.g165186.t1.2	Cre03.g165186.t1.2		3155407,3155752,3156133,3156643,3157139	3155542,3155922,3156480,3156762,3157577	
chr3	3157596	3162996	3158221	3162834	-	ATG7	Cre03.g165200.t1.1		3162241,3161838,3160085,3159614,3159252,3157596	3162996,3161883,3160140,3159707,3159359,3158827	Autophagy-related protein and dual specificity member of the E1 family; mediates the attachment of Atg12 to Atg5 and Atg8 to phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes
chr3	3163261	3173776	3163600	3173641	-	Cre03.g165215.t1.1	Cre03.g165215.t1.1		3173611,3173442,3173090,3172697,3172409,3172174,3171172,3170553,3170157,3169353,3168603,3168307,3163261	3173776,3173529,3173178,3172783,3172527,3172273,3171762,3170892,3170304,3169485,3169068,3168371,3164047	
chr3	3173897	3186510	3174146	3185413	+	Cre03.g165250.t1.1	Cre03.g165250.t1.1		3173897,3177650,3178125,3179522,3183152,3184231,3184800	3177116,3177851,3179216,3181655,3183953,3184382,3186510	null-allele mutant was isolated (PMID 29743196)
chr3	3186629	3192116	3187526	3191963	-	Cre03.g165300.t1.1	Cre03.g165300.t1.1		3191926,3191540,3190974,3190568,3189795,3188866,3188031,3186629	3192116,3191785,3191059,3190675,3190205,3189014,3188127,3187655	
chr3	3192239	3195526	3192862	3195143	-	Cre03.g165350.t1.1	Cre03.g165350.t1.1		3195264,3195128,3194864,3194486,3193959,3193492,3193281,3192239	3195526,3195155,3194951,3194585,3194096,3193574,3193411,3193006	
chr3	3195647	3197136	3195738	3196431	+	COX16	Cre03.g165400.t1.2		3195647,3196176	3195849,3197136	Putative mitochondrial inner membrane protein, required for assembly of cytochrome c oxidase (mitochondrial complex IV); similar to cytochrome c oxidase assembly factor 16 of yeast.
chr3	3197377	3210288	3197534	3209167	+	Cre03.g165450.t1.1	Cre03.g165450.t1.1		3197377,3197996,3198486,3198912,3199303,3199768,3200597,3201143,3201398,3201787,3202265,3202776,3203149,3203555,3203851,3204207,3204790,3205525,3207222,3207700	3197633,3198068,3198631,3199025,3199373,3200167,3200795,3201246,3201514,3201930,3202381,3202895,3203211,3203695,3204056,3204597,3205242,3206823,3207365,3210288	
chr3	3210387	3211768	3210578	3211192	+	Cre03.g165471.t1.2	Cre03.g165471.t1.2		3210387,3211192	3210773,3211768	
chr3	3226187	3226973	3226283	3226572	+	Cre03.g165500.t1.2	Cre03.g165500.t1.2		3226187	3226973	
chr3	3227761	3233636	3228162	3233366	-	Cre03.g165550.t1.2	Cre03.g165550.t1.2		3231386,3230603,3229784,3229217,3228607,3227761	3233636,3230770,3229927,3229309,3228714,3228285	
chr3	3233737	3237608	3233911	3236470	+	Cre03.g165600.t1.2	Cre03.g165600.t1.2		3233737,3234632,3234999,3235271,3235627	3234191,3234748,3235063,3235405,3237608	
chr3	3237610	3239886	3238447	3239754	-	Cre03.g165650.t1.1	Cre03.g165650.t1.1		3239718,3239530,3239328,3238825,3237610	3239886,3239632,3239409,3238903,3238606	
chr3	3240045	3248371	3241062	3247732	+	PDC3	Cre03.g165700.t1.1		3240045,3240758,3241399,3241810,3242202,3242618,3242962,3243357,3243775,3244063,3244556,3244870,3245267,3245890,3246227,3246677,3247152,3247549	3240145,3241099,3241499,3241921,3242284,3242722,3243046,3243509,3243892,3244151,3244608,3244913,3245438,3245978,3246368,3246768,3247236,3248371	pyruvate decarboxylase [EC 4.1.1.1]; requires thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor; alpha subunit of the E1 component of the mitochondrial pyruvate dehydrogenase complex (mtPDC) catalyzes the oxidative decarboxylation of pyruvate, yielding acetyl-CoA and NADH to support the Krebs cycle and oxidative phosphorylation; a plastid pyruvate decarboxylase also exists
chr3	3248381	3265996	3249463	3265785	-	Cre03.g165750.t1.1	Cre03.g165750.t1.1		3265696,3265444,3264620,3264154,3263744,3263335,3262840,3262243,3261735,3261304,3260949,3260557,3260202,3259792,3259191,3258812,3258501,3257927,3257244,3256737,3256360,3255904,3255234,3254878,3254348,3253580,3253162,3252686,3252081,3251719,3251283,3250798,3250440,3249872,3248381	3265996,3265528,3264667,3264223,3263873,3263454,3262912,3262384,3261850,3261390,3261025,3260677,3260295,3259892,3259292,3258907,3258596,3258077,3257410,3256883,3256418,3256033,3255426,3254994,3254526,3253915,3253327,3252855,3252386,3251871,3251344,3250915,3250547,3250087,3249643	
chr3	3266357	3268188	3266518	3267862	+	Cre03.g165801.t1.1	Cre03.g165801.t1.1		3266357,3267107,3267796	3266800,3267589,3268188	
chr3	3268311	3273946	3268946	3273836	-	Cre03.g165850.t1.2	Cre03.g165850.t1.2		3273775,3273075,3272674,3272422,3272011,3271663,3271350,3270801,3270252,3269873,3269338,3268311	3273946,3273673,3272835,3272486,3272098,3271751,3271491,3271109,3270316,3270007,3269547,3269115	
chr3	3274067	3278205	3274208	3276592	+	PGM17	Cre03.g165900.t1.1		3274067,3274559,3274853,3275409,3276001,3276394	3274447,3274592,3275002,3275538,3276164,3278205	
chr3	3278950	3284646	3279251	3283345	-	Cre03.g165950.t1.2	Cre03.g165950.t1.2		3284411,3283153,3282357,3282053,3281421,3280929,3280006,3278950	3284646,3283406,3282913,3282152,3281687,3281150,3280230,3279647	
chr3	3284711	3285836	3284922	3285740	-	Cre03.g165976.t1.1	Cre03.g165976.t1.1		3285535,3285223,3284711	3285836,3285264,3284957	
chr3	3286828	3291976	3288560	3291870	-	Cre03.g166000.t1.1	Cre03.g166000.t1.1		3290726,3290349,3289930,3286828	3291976,3290427,3290125,3289658	
chr3	3292047	3298546	3292958	3298297	-	SBD1	Cre03.g166050.t1.2		3298240,3297607,3297251,3296898,3296630,3296156,3295842,3295622,3295206,3294576,3294175,3293641,3293429,3292047	3298546,3297781,3297343,3297002,3296652,3296223,3295903,3295674,3295325,3294787,3294301,3293780,3293486,3293099	Selenium binding protein. GI:15485720. AJ401228.1. Over 50% identical with selenium binding protein of Medicago, Oryza and Arabidopsis [PMID: 12026169]
chr3	3298726	3300776	3298996	3300648	-	Cre03.g166100.t1.2	Cre03.g166100.t1.2		3300616,3300232,3299957,3299410,3298726	3300776,3300340,3300030,3299506,3299086	
chr3	3300926	3302476	3301087	3302461	-	Cre03.g166150.t1.1	Cre03.g166150.t1.1		3302432,3302130,3301758,3301460,3300926	3302476,3302226,3301831,3301556,3301159	
chr3	3302524	3306056	3302899	3305870	-	Cre03.g166201.t1.1	Cre03.g166201.t1.1		3305791,3305515,3305186,3304877,3304452,3303833,3303492,3302524	3306056,3305569,3305306,3304956,3304578,3303946,3303571,3303188	
chr3	3308163	3313626	3308884	3313469	-	Cre03.g166250.t1.2	Cre03.g166250.t1.2		3312913,3312478,3312103,3311795,3311518,3311129,3310868,3310451,3310088,3309736,3308163	3313626,3312646,3312193,3311890,3311577,3311194,3310954,3310598,3310160,3309865,3309397	
chr3	3314597	3316596	3314691	3316239	+	Cre03.g166300.t1.2	Cre03.g166300.t1.2		3314597,3315002,3315437,3315834,3316179	3314717,3315026,3315505,3315869,3316596	
chr3	3320991	3324208	3321485	3323562	-	Cre03.g166350.t1.1	Cre03.g166350.t1.1		3324149,3323559,3323268,3322940,3322621,3322213,3321889,3320991	3324208,3323637,3323338,3323000,3322745,3322333,3322032,3321581	
chr3	3324273	3330148	3326693	3329996	-	Cre03.g166400.t1.2	Cre03.g166400.t1.2		3329868,3329444,3329090,3328767,3328453,3328134,3327839,3327503,3327061,3324273	3330148,3329549,3329138,3328924,3328551,3328218,3327933,3327628,3327271,3326749	
chr3	3330894	3335188	3331917	3334819	-	Cre03.g166450.t1.1	Cre03.g166450.t1.1		3334344,3333820,3333518,3333066,3330894	3335188,3333980,3333653,3333368,3332669	
chr3	3335289	3340565	3335357	3338314	+	Cre03.g166500.t1.2	Cre03.g166500.t1.2		3335289,3335701	3335504,3340565	
chr3	3340872	3343358	3341135	3343148	-	Cre03.g166550.t1.1	Cre03.g166550.t1.1		3342837,3342433,3342159,3341705,3340872	3343358,3342658,3342210,3341937,3341447	
chr3	3343829	3351950	3344096	3351113	+	Cre03.g166600.t1.1	Cre03.g166600.t1.1		3343829,3344246,3344455,3344719,3345236,3345520,3346729,3347355,3347944,3348321,3348866	3344171,3344338,3344540,3345064,3345325,3346506,3347193,3347817,3348176,3348701,3351950	ts-lethal mutant was isolated (PMID 29743196)
chr3	3351955	3356158	3352054	3356116	-	CGLD3	Cre03.g166650.t1.1		3355744,3355313,3354741,3354350,3354018,3353591,3353327,3352910,3351955	3356158,3355494,3355023,3354433,3354135,3353823,3353389,3353140,3352486	Conserved in the Green Lineage and Diatoms
chr3	3356259	3368680	3356491	3367983	+	FOR1	Cre03.g166700.t1.1		3356259,3356603,3356770,3357514,3357725,3358102,3361107,3361506,3361712,3361928,3362440,3362782,3363126,3363932,3364509,3366774,3367162	3356500,3356685,3357378,3357589,3357956,3360944,3361379,3361580,3361801,3362320,3362652,3363034,3363822,3364360,3366655,3367004,3368680	Nucleates and catalyzes long chain actin filament formation from actin-profilin precursor complexes.
chr3	3369529	3375598	3370288	3373938	+	PTK3	Cre03.g166750.t1.2		3369529,3370581,3371074,3371349,3371718,3372001,3372378,3372565,3372730,3372927,3373156,3373785	3370421,3370889,3371153,3371453,3371796,3372167,3372447,3372608,3372813,3372980,3373275,3375598	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr3	3375649	3383210	3375818	3382579	+	Cre03.g166800.t1.1	Cre03.g166800.t1.1		3375649,3376071,3376513,3376865,3377132,3377381,3379114	3375857,3376362,3376707,3376956,3377263,3378880,3383210	
chr3	3383739	3401767	3383978	3401456	+	Cre03.g166850.t1.1	Cre03.g166850.t1.1		3383739,3384209,3384563,3384921,3385535,3385869,3386298,3387001,3387420,3387978,3388525,3389010,3389392,3389769,3390277,3390604,3391155,3392226,3392497,3392837,3393170,3393488,3394047,3394344,3394922,3395426,3395734,3396063,3396513,3396998,3397316,3397753,3398105,3398664,3398896,3399476,3400039,3400634,3400950,3401284	3384089,3384406,3384757,3385367,3385661,3385992,3386379,3387237,3387772,3388113,3388793,3389176,3389625,3389980,3390389,3391022,3391992,3392337,3392607,3392985,3393274,3393753,3394181,3394684,3395085,3395498,3395861,3396254,3396847,3397167,3397617,3397894,3398238,3398762,3399285,3399837,3400412,3400765,3401050,3401767	
chr3	3401931	3410088	3402461	3409941	-	CYP767A1	Cre03.g166900.t1.1		3409267,3408644,3408276,3407802,3407433,3406897,3406233,3405957,3405567,3405225,3403982,3403585,3402733,3401931	3410088,3408818,3408375,3407931,3407538,3407053,3406471,3406038,3405757,3405351,3404861,3403702,3403173,3402461	cytochrome P450, most like CYP4 family sequences in animals.
chr3	3401931	3410088	3402461	3409941	-	CYP767A1	Cre03.g166900.t2.1		3409698,3409267,3408644,3408276,3407802,3407433,3406897,3406233,3405957,3405567,3405225,3403982,3403585,3402733,3401931	3410088,3409646,3408818,3408375,3407931,3407538,3407053,3406471,3406038,3405757,3405351,3404861,3403702,3403173,3402461	cytochrome P450, most like CYP4 family sequences in animals.
chr3	3410379	3415397	3410777	3415143	+	PGM5	Cre03.g166950.t1.2		3410379,3411521,3411883,3412162,3412475,3412755,3413181,3414225	3410996,3411610,3411972,3412232,3412535,3412892,3413405,3415397	Phosphoglycerate/bisphosphoglycerate mutase family protein (PGAM) [EC 5.4.2.1]l
chr3	3415529	3417680	3415736	3417095	+	UBC3	Cre03.g167000.t1.2		3415529,3415926,3416334,3416613,3416876,3417043	3415786,3416117,3416427,3416669,3416922,3417680	
chr3	3417729	3419900	3417759	3419674	+	PDX3	Cre03.g167050.t1.1		3417729,3417959,3418181,3418621,3418916,3419296	3417795,3418036,3418481,3418672,3419063,3419900	Pyridoxin (vitamin B6)  biosynthesis protein, SNO glutamine amidotransferase
chr3	3419949	3422771	3419988	3421847	+	Cre03.g167051.t1.2	Cre03.g167051.t1.2		3419949,3420526,3420806,3421095,3421684	3420292,3420599,3420861,3421292,3422771	
chr3	3422773	3425608	3423694	3425488	-	Cre03.g167101.t1.1	Cre03.g167101.t1.1		3425471,3422773	3425608,3425237	
chr3	3425803	3430718	3426229	3430506	-	FMO1	Cre03.g167150.t1.2		3430470,3429931,3429616,3429149,3428815,3428464,3428174,3427755,3427530,3427177,3426841,3425803	3430718,3430176,3429681,3429424,3428979,3428621,3428275,3427896,3427576,3427275,3426937,3426523	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; one of the many Arabidopsis homologues is essential for Systemic Acquired Resistance to pathogens (PMID: 16778014)
chr3	3431606	3445178	3432963	3445067	-	Cre03.g167200.t1.1	Cre03.g167200.t1.1		3444941,3444416,3444077,3443547,3443264,3442951,3442613,3441367,3440989,3440591,3433332,3431606	3445178,3444571,3444228,3443886,3443380,3443076,3442771,3442415,3441193,3440778,3440323,3433109	
chr3	3445320	3450190	3445435	3449720	+	Cre03.g167250.t1.2	Cre03.g167250.t1.2		3445320,3445737,3446079,3446492,3446952,3447185,3447519,3447804,3448235,3449159,3449582	3445592,3445873,3446174,3446623,3447009,3447336,3447613,3448009,3448446,3449275,3450190	
chr3	3450239	3453291	3450724	3452506	+	Cre03.g167300.t1.2	Cre03.g167300.t1.2		3450239,3450705,3450910,3451467	3450579,3450763,3451325,3453291	
chr3	3453679	3457160	3454132	3456389	+	Cre03.g167351.t1.1	Cre03.g167351.t1.1		3453679,3454512,3455232,3455404	3454254,3455089,3455295,3457160	
chr3	3457229	3460185	3457388	3459617	+	Cre03.g167400.t1.2	Cre03.g167400.t1.2		3457229,3457889,3458444,3458762,3459139,3459467	3457793,3457992,3458543,3458855,3459239,3460185	
chr3	3460576	3464648	3461111	3464618	-	Cre03.g167450.t1.1	Cre03.g167450.t1.1		3464473,3464025,3463668,3463100,3462741,3462538,3462198,3461859,3461510,3460576	3464648,3464351,3463824,3463268,3462804,3462626,3462336,3461984,3461592,3461282	
chr3	3464752	3467300	3464884	3466556	+	Cre03.g167500.t1.2	Cre03.g167500.t1.2		3464752,3464997,3465443,3465724,3466000,3466415	3464903,3465155,3465522,3465855,3466161,3467300	
chr3	3467313	3482218	3467687	3481976	-	CEP290	Cre03.g167550.t1.1		3481868,3481543,3481124,3480841,3480319,3479875,3479581,3479158,3478696,3478294,3477995,3477707,3477211,3476882,3476505,3476261,3475986,3475627,3475255,3474800,3474393,3474058,3473517,3473048,3472717,3472306,3471678,3471187,3470818,3470551,3470277,3469896,3469583,3469254,3468552,3468209,3467313	3482218,3481746,3481234,3480938,3480598,3480071,3479758,3479406,3478938,3478482,3478117,3477878,3477530,3476996,3476671,3476335,3476132,3475836,3475433,3475121,3474599,3474209,3473807,3473243,3472794,3472518,3472094,3471357,3471023,3470721,3470373,3470128,3469762,3469428,3469100,3468392,3468037	Found in basal body proteome [PMID: 15964273]; Transition Zone Protein; Human homolog cep29 localizes to centrosome, and is also called 3H11 antigen.
chr3	3482417	3487869	3482551	3487354	+	FAP61	Cre03.g167600.t1.2		3482417,3482738,3483035,3483554,3485370,3486335,3487146	3482655,3482803,3483273,3485070,3486041,3486972,3487869	Associated with the CaM- and spoke-Associated CSC complex at the base of the radial spoke; altered in DRC mutant axonemes; conserved Flagellar Associated Protein; identified in the flagellar basal body proteome [PMID: 15137946]; basal structure of RS3 (PubMed ID:25694453 Urbanska et al Wloga, 2015); upregulated by deflagellation; null-allele mutant was isolated (PMID 29743196)
chr3	3487941	3491745	3488421	3491350	-	Cre03.g167622.t1.1	Cre03.g167622.t1.1		3491244,3490723,3490110,3489523,3488982,3488650,3487941	3491745,3490950,3490205,3489601,3489057,3488706,3488484	
chr3	3487941	3491948	3488421	3491350	-	Cre03.g167622.t2.1	Cre03.g167622.t2.1		3491244,3490723,3490110,3489523,3488982,3488650,3487941	3491948,3490950,3490205,3489601,3489057,3488706,3488484	
chr3	3487941	3491948	3488484	3490780	-	Cre03.g167644.t1.1	Cre03.g167644.t1.1		3491452,3490723,3490110,3489523,3488538,3487941	3491948,3490950,3490205,3489601,3489057,3488484	
chr3	3488148	3491948	3488484	3490780	-	Cre03.g167644.t2.1	Cre03.g167644.t2.1		3491452,3490723,3490105,3489523,3488982,3488650,3488148	3491948,3490950,3490205,3489601,3489057,3488706,3488484	
chr3	3498653	3500188	3498951	3500093	-	Cre03.g167668.t1.1	Cre03.g167668.t1.1		3499735,3499087,3498653	3500188,3499274,3498957	
chr3	3500349	3502064	3500502	3500707	+	Cre03.g167690.t1.1	Cre03.g167690.t1.1		3500349	3502064	
chr3	3518417	3523018	3519891	3522936	-	Cre03.g167712.t1.1	Cre03.g167712.t1.1		3522878,3522414,3522216,3521233,3520986,3520642,3520390,3520059,3518417	3523018,3522724,3522258,3521721,3521093,3520782,3520464,3520193,3519968	
chr3	3530879	3531942	3530995	3531239	+	Cre03.g167734.t1.1	Cre03.g167734.t1.1		3530879	3531942	
chr3	3531334	3537118	3532037	3536939	-	Cre03.g167756.t1.1	Cre03.g167756.t1.1		3536772,3535687,3531334	3537118,3536402,3532105	
chr3	3537759	3542873	3538279	3542368	+	FAP382	Cre03.g167778.t1.1		3537759,3538279,3539042,3539350,3539935,3540543,3541003,3541917,3542160	3538161,3538319,3539124,3539474,3540042,3540655,3541122,3541980,3542873	
chr3	3542949	3545013	3543144	3544594	+	Cre03.g167850.t1.2	Cre03.g167850.t1.2		3542949,3543907,3544543	3543651,3544392,3545013	
chr3	3545054	3547888	3545822	3547690	-	Cre03.g167887.t1.1	Cre03.g167887.t1.1		3547690,3547337,3546966,3546571,3545054	3547888,3547441,3547031,3546702,3546359	
chr3	3545994	3547988	3546087	3547690	-	Cre03.g167887.t2.1	Cre03.g167887.t2.1		3547690,3547337,3546966,3546567,3545994	3547988,3547441,3547031,3546702,3546125	
chr3	3548219	3551060	3548336	3550601	+	Cre03.g167924.t1.1	Cre03.g167924.t1.1		3548219,3548434,3548662,3548980,3549263,3549888,3550500	3548339,3548480,3548731,3549076,3549486,3550107,3551060	
chr3	3551063	3555628	3551807	3555449	-	Cre03.g168000.t1.2	Cre03.g168000.t1.2		3555287,3554931,3554307,3553818,3551063	3555628,3555146,3554702,3554081,3553640	
chr3	3555729	3560799	3555830	3560160	+	Cre03.g168050.t1.2	Cre03.g168050.t1.2		3555729,3556064,3556643,3557071,3557666,3558301,3558618,3559595,3560019	3555980,3556225,3556771,3557163,3557836,3558399,3559434,3559770,3560799	Global transcription factor with bromodomain.  ChromoDB GTE344
chr3	3561459	3565452	3561678	3564673	+	Cre03.g168100.t1.2	Cre03.g168100.t1.2		3561459,3562024,3562316,3562634,3562861	3561809,3562183,3562423,3562711,3565452	
chr3	3565473	3573088	3567022	3572727	-	Cre03.g168150.t1.2	Cre03.g168150.t1.2		3572667,3572493,3572215,3571485,3570698,3569813,3569466,3568932,3568509,3567882,3567463,3565473	3573088,3572588,3572258,3571665,3570824,3569964,3569579,3569009,3568599,3568038,3567604,3567181	
chr3	3573209	3579188	3573343	3578973	+	FAP69	Cre03.g168200.t1.2		3573209,3573778,3574016,3574346,3575936,3576969,3577366,3577647,3577935,3578268,3578862	3573597,3573919,3574125,3575618,3576684,3577092,3577518,3577706,3578089,3578445,3579188	Conserved Flagellar Associated Protein
chr3	3579299	3582229	3579795	3581574	+	Cre03.g168250.t1.1	Cre03.g168250.t1.1		3579299,3579772,3580297,3580610,3580997,3581166	3579665,3579852,3580380,3580777,3581020,3582229	
chr3	3582539	3585809	3584146	3584837	+	Cre03.g168300.t1.2	Cre03.g168300.t1.2		3582539,3582972,3584009,3584543	3582806,3583004,3584428,3585809	
chr3	3588764	3593208	3589366	3593159	-	Cre03.g168350.t1.1	Cre03.g168350.t1.1		3593061,3592900,3592701,3592318,3591943,3591361,3590956,3590343,3590051,3588764	3593208,3592945,3592762,3592414,3592179,3591705,3591165,3590794,3590144,3589933	
chr3	3593263	3599178	3593659	3599070	-	Cre03.g168400.t1.1	Cre03.g168400.t1.1		3598359,3596977,3596208,3595762,3595247,3594996,3594783,3594450,3594083,3593263	3599178,3598214,3596787,3595916,3595520,3595075,3594867,3594563,3594205,3593752	
chr3	3599341	3604798	3599922	3604686	-	CCT8	Cre03.g168450.t1.2		3604541,3604268,3603884,3603374,3602762,3602456,3601937,3601435,3600917,3600475,3599341	3604798,3604425,3603988,3603442,3602911,3602563,3602013,3601684,3601123,3600722,3600040	T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta) (TCPQ); subunit 8 of cytosolic chaperonin complex; ts-lethal mutant was isolated (PMID 29743196)
chr3	3605053	3607368	3605583	3607152	-	Cre03.g168500.t1.2	Cre03.g168500.t1.2		3607094,3606935,3606605,3606318,3605053	3607368,3606997,3606675,3606386,3606084	
chr3	3607468	3612674	3607559	3612051	+	AOT3	Cre03.g168550.t1.1		3607468,3608315,3608660,3609659,3610124,3610544,3611100,3611442,3611898	3607817,3608446,3608824,3609829,3610291,3610690,3611180,3611591,3612674	Amino acid/polyamine transporter; belongs to AAAP family of amino acid/auxin permeases; most similar to plant relatives and Ostreococcus AOT3; probably organelle-targeted
chr3	3613029	3614500	3613378	3614465	+	Cre03.g168600.t1.1	Cre03.g168600.t1.1		3613029,3614072,3614428	3613648,3614256,3614500	null-allele passenger mutation was isolated (PMID 29743196)
chr3	3614559	3621770	3614597	3620889	+	Cre03.g168605.t1.2	Cre03.g168605.t1.2		3614559,3614873,3615136,3620364,3620871	3614618,3614917,3615285,3620516,3621770	
chr3	3621914	3631748	3622446	3631644	-	Cre03.g168650.t1.1	Cre03.g168650.t1.1		3631557,3631150,3630577,3628896,3628181,3627856,3627391,3626791,3626411,3623818,3623434,3621914	3631748,3631458,3630934,3630427,3628524,3627997,3627659,3627161,3626568,3626358,3623595,3623166	
chr3	3631849	3637080	3632018	3636427	+	Cre03.g168700.t1.2	Cre03.g168700.t1.2		3631849,3632131,3632550,3632959,3634441,3634820,3635283,3635834,3636311	3632049,3632196,3632617,3633051,3634506,3634951,3635433,3636037,3637080	Phosphoglycolate phosphatase (EC 3.1.3.18), chloroplast precursor with putative stromal localization; CO2-responsive gene; matches with published cDNA [GenBank AB091101, PMID: 11581250]
chr3	3637083	3641908	3637328	3641700	-	Cre03.g168750.t1.1	Cre03.g168750.t1.1		3641585,3641331,3640855,3640510,3640120,3639502,3639193,3638667,3638031,3637625,3637083	3641908,3641443,3641172,3640626,3640210,3639629,3639264,3638822,3638153,3637691,3637471	
chr3	3642029	3643820	3642283	3642458	+	Cre03.g168775.t1.1	Cre03.g168775.t1.1		3642029	3643820	
chr3	3643833	3654678	3644312	3654469	-	KIN4-1	Cre03.g168800.t1.1		3654410,3654084,3653726,3653463,3653246,3652898,3652482,3652142,3651868,3651432,3651151,3650537,3649883,3649511,3649078,3647794,3647302,3647106,3643833	3654678,3654216,3653901,3653544,3653290,3653085,3652701,3652336,3652004,3651694,3651310,3651014,3650335,3649702,3649365,3648927,3647577,3647159,3646922	kinesin-4 family
chr3	3654779	3656244	3654924	3655708	+	Cre03.g168850.t1.2	Cre03.g168850.t1.2		3654779,3655498	3655062,3656244	
chr3	3656339	3661516	3656481	3660877	+	FMO12	Cre03.g168900.t1.2		3656339,3656577,3656881,3657286,3657697,3658378,3658778,3659054,3659389,3659738,3660022,3660330,3660568,3660796	3656490,3656712,3657037,3657545,3658139,3658571,3658854,3659178,3659514,3659857,3660078,3660398,3660615,3661516	Putative 4-hydroxyacetophenone monooxygenase (HAPMO), flavin-dependent oxidoreductase
chr3	3661569	3663160	3661696	3662622	+	Cre03.g168950.t1.2	Cre03.g168950.t1.2		3661569,3661999,3662264,3662493	3661854,3662119,3662278,3663160	
chr3	3663163	3667978	3663708	3667881	-	Cre03.g169000.t1.2	Cre03.g169000.t1.2		3667794,3667520,3666138,3665487,3665178,3664812,3664403,3664046,3663163	3667978,3667594,3667364,3665964,3665287,3664920,3664650,3664103,3663860	
chr3	3668099	3671760	3668124	3671197	+	Cre03.g169050.t1.2	Cre03.g169050.t1.2		3668099,3668493,3668800,3669140,3669521,3669977,3670822	3668223,3668559,3668912,3669241,3669660,3670541,3671760	
chr3	3671907	3677883	3672310	3676708	+	Cre03.g169100.t1.1	Cre03.g169100.t1.1		3671907,3672488,3672959,3673504,3673804,3674194	3672324,3672628,3673329,3673638,3674021,3677883	null-allele mutant was isolated (PMID 29743196)
chr3	3678047	3684463	3678933	3684264	+	Cre03.g169150.t1.2	Cre03.g169150.t1.2		3678047,3678860,3679106,3679281,3679828,3680283,3680589,3680921,3681329,3681744,3682114,3682442,3682975,3683424,3684079	3678599,3678993,3679150,3679453,3679998,3680376,3680694,3681114,3681409,3681899,3682261,3682716,3683278,3683867,3684463	
chr3	3678047	3684463	3678933	3684264	+	Cre03.g169150.t2.1	Cre03.g169150.t2.1		3678047,3678860,3679106,3679281,3679828,3680283,3680589,3680921,3681329,3681744,3682114,3682442,3682975,3683424,3684079	3678599,3678993,3679150,3679453,3679998,3680376,3680694,3681114,3681409,3681899,3682261,3682716,3683278,3683840,3684463	
chr3	3684517	3686608	3684710	3686101	+	Cre03.g169200.t1.2	Cre03.g169200.t1.2		3684517,3685117,3685517,3685926	3684839,3685234,3685628,3686608	
chr3	3686637	3692750	3687062	3692417	-	Cre03.g169250.t1.1	Cre03.g169250.t1.1		3692556,3692212,3689567,3687634,3686637	3692750,3692449,3690267,3689256,3687335	null-allele passenger mutation was isolated (PMID 29743196)
chr3	3692861	3700026	3694312	3699834	-	Cre03.g169300.t1.2	Cre03.g169300.t1.2		3699600,3699456,3699237,3699004,3698723,3698370,3698085,3697674,3697377,3697103,3696778,3696402,3695983,3695493,3695136,3694908,3694676,3692861	3700026,3699511,3699315,3699111,3698801,3698471,3698191,3697796,3697458,3697177,3697013,3696593,3696144,3695648,3695241,3694942,3694765,3694498	
chr3	3692861	3700026	3694312	3699937	-	Cre03.g169300.t2.1	Cre03.g169300.t2.1		3699915,3699600,3699456,3699237,3699004,3698723,3698370,3698085,3697674,3697377,3697103,3696778,3696402,3695983,3695493,3695136,3694908,3694676,3692861	3700026,3699688,3699511,3699315,3699111,3698801,3698471,3698191,3697796,3697458,3697177,3697013,3696593,3696144,3695648,3695241,3694942,3694765,3694498	
chr3	3700187	3703434	3700314	3703076	+	Cre03.g169350.t1.1	Cre03.g169350.t1.1		3700187,3700653,3700951,3701261,3701570,3702075,3702782	3700512,3700736,3701093,3701408,3701860,3702653,3703434	
chr3	3703566	3706158	3703595	3705694	+	UXS1	Cre03.g169400.t1.2		3703566,3703821,3704344,3704676,3705031,3705475	3703727,3703984,3704537,3704731,3705252,3706158	UDP-D-glucuronic acid decarboxylase (UDP-D-glucuronate decarboxylase)
chr3	3706161	3709406	3707081	3709313	-	Cre03.g169450.t1.1	Cre03.g169450.t1.1		3709103,3708680,3707736,3706161	3709406,3708915,3708520,3707527	null-allele mutant was isolated (PMID 29743196)
chr3	3709775	3716106	3710756	3715749	-	Cre03.g169500.t1.2	Cre03.g169500.t1.2		3715743,3714906,3714529,3714254,3713981,3713607,3713284,3709775	3716106,3715028,3714643,3714390,3714122,3713844,3713437,3713162	
chr3	3722161	3726636	3723012	3726288	-	AOX2	Cre03.g169550.t1.1		3726216,3725944,3725690,3725430,3725108,3724816,3724540,3724164,3723932,3723713,3723429,3722161	3726636,3726114,3725761,3725493,3725167,3724890,3724588,3724256,3724016,3723803,3723466,3723093	Alternative oxidase, mitochondrial precursor (see gi 9930474 gb AAG02081.1 AF285187_1[9930474])
chr3	3726730	3728466	3727462	3727785	-	CSB18	Cre03.g169601.t1.1		3727930,3727701,3726730	3728466,3727811,3727585	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr3	3729087	3734638	3729133	3733212	+	Cre03.g169650.t1.1	Cre03.g169650.t1.1		3729087,3729284,3729449,3729687,3729824,3730088,3732150	3729215,3729365,3729524,3729746,3729951,3731696,3734638	
chr3	3734641	3737426	3734892	3737319	-	Cre03.g169700.t1.2	Cre03.g169700.t1.2		3737191,3736931,3736550,3736370,3736134,3735631,3735273,3734641	3737426,3737002,3736641,3736417,3736225,3735844,3735421,3735048	
chr3	3737567	3741878	3737957	3741301	+	FAP371	Cre03.g169750.t1.2		3737567,3738159,3738504,3739009,3739340,3739771,3740210,3741198	3738026,3738292,3738669,3739172,3739531,3739976,3740996,3741878	Found in Cr and Volvox but not strongly conserved elsewhere
chr3	3741887	3744566	3742489	3744400	-	Cre03.g169800.t1.2	Cre03.g169800.t1.2		3744274,3743906,3743592,3743288,3742836,3741887	3744566,3744082,3743708,3743388,3743063,3742667	
chr3	3744811	3753626	3745527	3753358	-	TSC1	Cre03.g169850.t1.2		3752989,3752691,3752028,3750990,3750345,3750011,3749669,3749300,3748669,3748428,3747906,3747616,3747131,3746852,3746589,3746240,3745924,3744811	3753626,3752795,3752163,3751117,3750511,3750119,3749877,3749398,3748864,3748469,3748010,3747713,3747339,3746943,3746703,3746406,3746010,3745680	Cysteine--tRNA ligase
chr3	3754656	3757841	3754753	3757297	+	Cre03.g169900.t1.2	Cre03.g169900.t1.2		3754656,3755294,3755609,3755926,3756468,3756937,3757134	3754948,3755372,3755724,3756054,3756661,3756963,3757841	
chr3	3757897	3769528	3758621	3768101	+	Cre03.g169950.t1.1	Cre03.g169950.t1.1		3757897,3758350,3760386,3760616,3761800,3762193,3762812,3763135,3764163,3764489	3758033,3760217,3760469,3761649,3762013,3762576,3763014,3764043,3764346,3769528	
chr3	3769587	3772858	3770304	3771607	+	Cre03.g170001.t1.1	Cre03.g170001.t1.1		3769587,3770146,3770497,3771023,3771338	3769857,3770397,3770865,3771092,3772858	
chr3	3772923	3774829	3773587	3774746	-	Cre03.g170050.t1.1	Cre03.g170050.t1.1		3774706,3774446,3774212,3773977,3772923	3774829,3774486,3774312,3774071,3773742	
chr3	3774977	3777398	3775056	3777242	+	Cre03.g170100.t1.2	Cre03.g170100.t1.2		3774977,3775493,3775809,3776239,3776846	3775304,3775627,3776068,3776630,3777398	
chr3	3777403	3783826	3778011	3783175	-	Cre03.g170150.t1.1	Cre03.g170150.t1.1		3783589,3783350,3783156,3782993,3782765,3782583,3782211,3781858,3781423,3781201,3780933,3780643,3780429,3780077,3779757,3779382,3779102,3778753,3777403	3783826,3783365,3783228,3783018,3782830,3782612,3782365,3781939,3781490,3781267,3781085,3780736,3780476,3780147,3779878,3779535,3779191,3778910,3778546	
chr3	3783879	3790546	3785078	3790445	-	Cre03.g170200.t1.1	Cre03.g170200.t1.1		3790242,3789871,3789519,3789301,3788993,3788758,3787947,3787641,3787391,3787217,3786995,3786695,3786431,3786080,3785775,3783879	3790546,3789962,3789543,3789397,3789150,3788839,3788081,3787793,3787472,3787276,3787065,3786825,3786568,3786188,3785932,3785520	null-allele mutant was isolated (PMID 29743196)
chr3	3783879	3790546	3785078	3789890	-	Cre03.g170200.t2.1	Cre03.g170200.t2.1		3790242,3789871,3789519,3789301,3788993,3788758,3787947,3787641,3787391,3787217,3786995,3786695,3786431,3786080,3785775,3783879	3790546,3789962,3789543,3789397,3789150,3788839,3788081,3787793,3787472,3787276,3787065,3786825,3786568,3786188,3785932,3785520	null-allele mutant was isolated (PMID 29743196)
chr3	3790671	3794326	3791191	3794098	-	Cre03.g170250.t1.1	Cre03.g170250.t1.1		3793975,3793816,3793438,3793095,3792658,3792290,3791918,3790671	3794326,3793893,3793596,3793263,3792755,3792471,3791981,3791707	
chr3	3794457	3801033	3794885	3800357	+	SUB5	Cre03.g170300.t1.2		3794457,3794882,3795269,3795552,3796511,3796855,3797507,3799020,3799418	3794798,3795137,3795434,3796222,3796616,3797341,3798858,3799171,3801033	
chr3	3794457	3801033	3794885	3800357	+	SUB5	Cre03.g170300.t2.1		3794457,3794885,3795269,3795552,3796511,3796855,3797507,3799020,3799418	3794798,3795137,3795434,3796222,3796616,3797341,3798858,3799171,3801033	
chr3	3801041	3805596	3801916	3805348	-	SEC12	Cre03.g170350.t1.2		3805109,3804792,3804395,3803824,3803487,3803109,3802715,3802241,3801041	3805596,3804904,3804542,3804014,3803561,3803320,3802798,3802413,3802055	Expressed Protein. Similar to SEC12, regulatory component of the COP-II coat protein complex. GEF for SAR-GTPase.
chr3	3805697	3809763	3805946	3808122	+	Cre03.g170400.t1.1	Cre03.g170400.t1.1		3805697,3806102,3806571	3805987,3806336,3809763	
chr3	3810157	3812188	3810530	3811863	+	Cre03.g170428.t1.2	Cre03.g170428.t1.2		3810157,3810516	3810359,3812188	
chr3	3812236	3815078	3812680	3814526	+	Cre03.g170450.t1.2	Cre03.g170450.t1.2		3812236,3812663,3813212,3813378,3813788,3814137,3814463	3812392,3812805,3813251,3813459,3813850,3814237,3815078	
chr3	3815091	3816821	3815510	3816654	-	Cre03.g170500.t1.2	Cre03.g170500.t1.2		3816366,3815949,3815091	3816821,3816105,3815608	
chr3	3816957	3822606	3817048	3822067	+	Cre03.g170550.t1.1	Cre03.g170550.t1.1		3816957,3817208,3817512,3817847,3818134,3818480,3818943,3819255,3819464,3819722,3820157,3820515,3820953,3821500,3821759	3817092,3817398,3817704,3818016,3818261,3818719,3819050,3819341,3819567,3819986,3820336,3820772,3821084,3821611,3822606	
chr3	3822957	3828558	3823127	3828061	+	POC4	Cre03.g170600.t1.1		3822957,3823684,3823954,3824276,3824582,3824924,3825313,3825692,3826087,3826505,3826888,3827175	3823337,3823764,3824113,3824358,3824752,3825073,3825452,3825852,3826202,3826639,3826991,3828558	Found in basal body proteome [PMID: 15964273]. Contains multiple SFI repeats, a conserved centrin-binding motif found in the yeast spindle pole body protein SFI1
chr3	3829245	3832526	3829388	3831568	+	Cre03.g170601.t1.2	Cre03.g170601.t1.2		3829245,3829662,3829895,3831565	3829535,3829698,3831234,3832526	
chr3	3832575	3836591	3832603	3836407	+	Cre03.g170625.t1.1	Cre03.g170625.t1.1		3832575,3835683,3836086	3835483,3835865,3836591	
chr3	3836955	3842676	3837262	3842580	+	Cre03.g170650.t1.1	Cre03.g170650.t1.1		3836955,3837242,3837736,3838197,3838941,3839567,3840036,3840518,3840964,3841455,3841732,3842079,3842463	3837139,3837393,3837854,3838719,3839120,3839695,3840237,3840631,3841134,3841512,3841817,3842159,3842676	
chr3	3842679	3846254	3843830	3846157	-	Cre03.g170700.t1.1	Cre03.g170700.t1.1		3846105,3845805,3845271,3844899,3844519,3842679	3846254,3845951,3845603,3844994,3844626,3844180	
chr3	3846309	3848069	3846800	3847994	-	RNP3	Cre03.g170750.t1.2		3847904,3847615,3847335,3846309	3848069,3847763,3847488,3846956	
chr3	3849365	3852656	3849441	3851808	+	Cre03.g170800.t1.2	Cre03.g170800.t1.2		3849365,3849896,3850641,3851023,3851532	3849684,3850000,3850766,3851166,3852656	
chr3	3852659	3856163	3852818	3856050	-	MMP19	Cre03.g170850.t1.1		3856001,3855506,3854946,3854374,3853862,3852659	3856163,3855712,3855406,3854700,3853998,3853599	Matrix metalloproteinase belonging to the M11 peptidase family
chr3	3856319	3860114	3856913	3860002	-	Cre03.g170900.t1.1	Cre03.g170900.t1.1		3859990,3859797,3859570,3859350,3858943,3858507,3857967,3857694,3857239,3856319	3860114,3859934,3859701,3859481,3859092,3858713,3858106,3857805,3857367,3856976	
chr3	3860169	3862734	3860453	3862709	-	Cre03.g170950.t1.2	Cre03.g170950.t1.2		3861053,3860169	3862734,3860816	
chr3	3863048	3868464	3864454	3868276	-	Cre03.g171000.t1.1	Cre03.g171000.t1.1		3868165,3867874,3867685,3867227,3863048	3868464,3868024,3867743,3867442,3866923	
chr3	3868985	3874796	3869177	3873913	+	GHL1	Cre03.g171050.t1.1		3868985,3869787,3870190,3870916,3871409,3871867,3872436,3872780,3873197,3873673	3869401,3869903,3870394,3871068,3871476,3872080,3872494,3872879,3873343,3874796	
chr3	3874845	3878187	3874889	3877479	+	Cre03.g171100.t1.1	Cre03.g171100.t1.1		3874845,3875111,3875474,3876035,3876475,3877001,3877416	3875036,3875263,3875538,3876138,3876573,3877140,3878187	
chr3	3878395	3884126	3878934	3883852	+	Cre03.g171150.t1.1	Cre03.g171150.t1.1		3878395,3878855,3879504,3879719,3880168,3880480,3880773,3881299,3881730,3882141,3882695,3882912,3883849	3878671,3879104,3879646,3879855,3880248,3880552,3881078,3881426,3881927,3882263,3882769,3883637,3884126	
chr3	3884295	3888026	3884745	3887717	+	Cre03.g171179.t1.2	Cre03.g171179.t1.2		3884295,3884603,3884937,3886422,3886705,3887353	3884489,3884791,3886198,3886477,3887172,3888026	
chr3	3888075	3895142	3888143	3894727	+	Cre03.g171200.t1.2	Cre03.g171200.t1.2		3888075,3888388,3888671,3889216,3889846,3891010,3893079,3893644,3894098	3888298,3888494,3888914,3889618,3890829,3892780,3893263,3893881,3895142	
chr3	3895149	3908174	3895507	3907930	-	Cre03.g171250.t1.2	Cre03.g171250.t1.2		3907927,3907786,3907354,3906366,3905889,3905492,3905093,3904635,3903997,3903506,3903128,3902581,3902179,3901566,3901105,3900744,3899948,3898545,3897874,3895149	3908174,3907806,3907506,3906798,3906044,3905721,3905214,3904789,3904148,3903604,3903220,3902968,3902342,3902025,3901337,3900848,3900535,3899503,3898075,3897424	
chr3	3895149	3908174	3895507	3907930	-	Cre03.g171250.t2.1	Cre03.g171250.t2.1		3907927,3907786,3907354,3906366,3905889,3905492,3905093,3904635,3903997,3903506,3903128,3902581,3902179,3901566,3901105,3900744,3899948,3898545,3897874,3895149	3908174,3907806,3907506,3906798,3906044,3905721,3905211,3904789,3904148,3903604,3903220,3902968,3902342,3902025,3901337,3900848,3900535,3899503,3898075,3897424	
chr3	3908305	3911636	3908389	3911260	+	GYX1	Cre03.g171300.t1.2		3908305,3908592,3908817,3909215,3909595,3909876,3910085,3910276,3910490,3910727,3911023	3908443,3908649,3908909,3909413,3909711,3909942,3910133,3910349,3910562,3910860,3911636	Probable glycolate oxidase, (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); based on similarity to spinach glycolate oxidase (Swissprot P05414)
chr3	3911667	3914524	3912356	3914229	-	SEC61A	Cre03.g171350.t1.2		3913545,3912601,3911667	3914524,3913326,3912377	Expressed Protein. Similar to Sec61-alpha, subunit of the ER-protein translocase.
chr3	3914685	3917406	3915432	3916125	+	Cre03.g171387.t1.1	Cre03.g171387.t1.1		3914685,3915358,3915920	3914935,3915497,3917406	
chr3	3917599	3927524	3918758	3927280	-	Cre03.g171424.t1.1	Cre03.g171424.t1.1		3927208,3926669,3924271,3922989,3922532,3921921,3921483,3917599	3927524,3926830,3926328,3924179,3922839,3922233,3921614,3921227	
chr3	3927625	3934275	3927716	3934032	+	Cre03.g171461.t1.1	Cre03.g171461.t1.1		3927625,3929833,3930424,3930822,3931547,3931993,3932738,3933164,3933543	3928206,3929939,3930612,3931022,3931678,3932037,3932923,3933295,3934275	
chr3	3934404	3935882	3934980	3935572	-	Cre03.g171500.t1.1	Cre03.g171500.t1.1		3934404	3935882	
chr3	3936015	3939106	3936120	3938399	+	SSA13	Cre03.g171550.t1.1		3936015,3936589,3936969,3937422,3937808,3938014,3938301	3936453,3936644,3937116,3937511,3937843,3938089,3939106	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr3	3939155	3944278	3939245	3943119	+	Cre03.g171600.t1.1	Cre03.g171600.t1.1		3939155,3939476,3939719,3940121,3940462,3940847,3941387,3941748,3942370,3942969	3939273,3939584,3939795,3940253,3940576,3941002,3941477,3942106,3942492,3944278	
chr3	3944465	3957708	3945016	3956611	+	HEL16	Cre03.g171650.t1.2		3944465,3944760,3945514,3946016,3946573,3947298,3947699,3947998,3949040,3949380,3949804,3950357,3950834,3951417,3951940,3952336,3952953,3953422,3953930,3954238,3954966,3955591,3956132	3944636,3945262,3945807,3946212,3946760,3947450,3947787,3948777,3949159,3949483,3949960,3950514,3951014,3951658,3952057,3952512,3953182,3953519,3954073,3954539,3955118,3955729,3957708	DEAD/DEAH box family ATP dependent RNA helicase; may be an mRNA splicing factor by homology to Ostreococcus tauri
chr3	3958499	3965614	3959218	3965584	-	Cre03.g171700.t1.1	Cre03.g171700.t1.1		3965574,3965460,3965165,3964686,3964320,3963855,3963510,3963011,3962135,3961558,3961271,3960935,3959711,3958499	3965614,3965501,3965272,3964873,3964429,3964056,3963617,3963152,3962804,3961689,3961320,3961052,3960686,3959218	
chr3	3965842	3972464	3966491	3972185	-	Cre03.g171751.t1.1	Cre03.g171751.t1.1		3971904,3971373,3971021,3970560,3969527,3968964,3967753,3967393,3965842	3972464,3971531,3971075,3970625,3969732,3969090,3968689,3967625,3966980	
chr3	3973252	3975901	3973421	3975174	+	FAP123	Cre03.g171800.t1.2		3973252,3973701,3974008,3974471,3974742,3975150	3973601,3973826,3974291,3974534,3975005,3975901	Flagellar Associated Protein, found in the flagellar proteome
chr3	3975965	3986766	3975989	3986482	+	Cre03.g171850.t1.1	Cre03.g171850.t1.1		3975965,3979306,3979652,3980146,3985153	3979165,3979510,3980003,3985055,3986766	null-allele mutant was isolated (PMID 29743196)
chr3	3986835	3991027	3987169	3989998	+	FAP56	Cre03.g171900.t1.1		3986835,3987330,3987668,3988012,3988761,3989743	3987241,3987371,3987859,3988422,3989396,3991027	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr3	3991039	4004384	3992716	4004292	-	PEPC2	Cre03.g171950.t1.1		4004256,4004061,4003844,4003419,4002954,4002361,4001732,4001083,4000393,3999402,3998906,3998337,3997947,3996682,3995725,3995297,3994723,3994354,3993421,3993059,3991039	4004384,4004156,4003903,4003549,4003107,4002538,4001847,4001232,4000839,4000075,3999014,3998450,3998018,3996879,3995885,3995459,3994975,3994520,3993603,3993154,3992824	PEP carboxylase, isoform 2 [PMID: 15941397, Accession number AAS01721]
chr3	4004486	4009408	4004569	4008921	+	KAR1	Cre03.g172000.t1.2		4004486,4005154,4006441,4006864,4007540,4007974,4008368,4008805	4004633,4005318,4006526,4007044,4007634,4008081,4008521,4009408	
chr3	4010225	4013275	4010949	4013176	-	TFB4	Cre03.g172050.t1.1		4013169,4012988,4012768,4012093,4011619,4010225	4013275,4013091,4012847,4012256,4011879,4011257	RNA polymerase II used in nucleotide excision in other organisms
chr3	4013386	4015087	4013528	4015065	+	PDF1A	Cre03.g172100.t1.2		4013386,4013748,4014116,4014601,4014986	4013603,4013879,4014307,4014794,4015087	Polypeptide deformylase,removes formyl group from initiator Met; predicted mitochondrion-targetted
chr3	4015090	4027335	4016039	4026973	-	Cre03.g172150.t1.2	Cre03.g172150.t1.2		4026856,4026401,4025974,4024269,4023910,4023425,4022941,4022258,4021865,4015090	4027335,4026550,4026195,4025768,4023968,4023584,4023210,4022703,4022011,4021620	
chr3	4027446	4031629	4027626	4030829	+	Cre03.g172200.t1.1	Cre03.g172200.t1.1		4027446,4027920,4028291,4028654,4029173,4029698,4030226,4030693	4027845,4028040,4028481,4028909,4029296,4029898,4030378,4031629	
chr3	4031680	4038745	4032332	4038604	-	Cre03.g172250.t1.1	Cre03.g172250.t1.1		4038310,4037991,4037487,4037166,4036853,4036052,4035606,4035139,4034840,4034528,4034194,4033884,4031680	4038745,4038065,4037621,4037236,4036965,4036482,4035769,4035259,4034959,4034664,4034296,4034020,4033572	
chr3	4038856	4041637	4039007	4041053	+	MPC5	Cre03.g172300.t1.2		4038856,4039289,4039694,4039985,4040331,4041002	4039183,4039540,4039817,4040067,4040700,4041637	Similar to mitochondrial phosphate carrier, mitochondrial inner membrane protein transfering inorganic phosphate into matrix
chr3	4041660	4042755	4041996	4042723	-	Cre03.g172322.t1.2	Cre03.g172322.t1.2		4042558,4041660	4042755,4042299	
chr3	4042840	4046995	4043588	4046818	-	Cre03.g172350.t1.1	Cre03.g172350.t1.1		4046623,4046202,4045066,4043754,4042840	4046995,4046311,4045792,4044808,4043588	
chr3	4042840	4043865	4043111	4043824	-	Cre03.g172376.t1.1	Cre03.g172376.t1.1		4043754,4043392,4042840	4043865,4043588,4043111	
chr3	4047116	4051077	4047230	4050948	+	Cre03.g172400.t1.1	Cre03.g172400.t1.1		4047116,4047466,4048070,4048475,4049070	4047290,4047904,4048266,4048852,4051077	
chr3	4051176	4054240	4051975	4052393	+	Cre03.g172451.t1.1	Cre03.g172451.t1.1		4051176,4052362	4052157,4054240	
chr3	4054372	4058797	4054450	4058166	+	PTOX2	Cre03.g172500.t1.1		4054372,4054641,4055120,4055397,4055684,4055981,4056382,4056743,4056927,4057321,4057610,4058106	4054509,4054682,4055261,4055492,4055818,4056151,4056517,4056759,4057089,4057420,4057739,4058797	Plastoquinol oxydase, regulates photosyntetic electron flow
chr3	4058800	4063255	4059512	4063224	-	PRMT1	Cre03.g172550.t1.2		4063170,4063000,4062465,4062094,4061692,4061375,4060867,4060566,4059812,4058800	4063255,4063048,4062607,4062213,4061874,4061479,4060953,4060598,4059928,4059659	Protein-/Histone-arginine N-methyltransferase; protein arginine N-methyltransferase (ChromDB PRMT341).  Previously annotated as PRMT1.  ChromoDB PRMT341.  Ribosomal L11 methyltransferase-like
chr3	4063416	4065947	4063516	4065206	+	Cre03.g172600.t1.2	Cre03.g172600.t1.2		4063416	4065947	
chr3	4066512	4071195	4067078	4070758	-	BLD2	Cre03.g172650.t1.2		4070588,4070391,4070064,4069554,4069293,4068768,4068238,4067826,4067364,4066512	4071195,4070436,4070117,4069712,4069367,4068963,4068530,4067999,4067497,4067241	Epsilon tubulin (TUE) [gi:2514387, PMID: 1242983], corresponds to BLD2 locus on linkage group III
chr3	4071296	4076317	4071407	4075640	+	Cre03.g172700.t1.2	Cre03.g172700.t1.2		4071296,4071772,4072089,4072791	4071602,4071808,4072592,4076317	
chr3	4076320	4081175	4076822	4080827	-	Cre03.g172750.t1.1	Cre03.g172750.t1.1		4077035,4076320	4081175,4076822	
chr3	4081344	4088355	4083687	4088048	-	Cre03.g172800.t1.2	Cre03.g172800.t1.2		4086835,4086126,4085465,4085186,4084836,4084370,4081344	4088355,4086691,4086019,4085245,4084895,4084654,4084197	
chr3	4089327	4093915	4090004	4093864	-	OASTL3	Cre03.g172850.t1.2		4093822,4093672,4093260,4092935,4092506,4092097,4091634,4091208,4090799,4090272,4089327	4093915,4093735,4093364,4092978,4092565,4092316,4091738,4091387,4090890,4090438,4090116	O-acetylserine sulfhydrylase (EC 2.5.1.47); cysteine synthase; O-acetylserine (Thiol)-lyase; Target-P predicts mitochondrial targeting; homology predicts plastid targeting
chr3	4094026	4097518	4094100	4096278	+	Cre03.g172900.t1.1	Cre03.g172900.t1.1		4094026,4094706,4094974,4095125,4095296,4095798,4096143	4094456,4094789,4095013,4095130,4095394,4095908,4097518	
chr3	4097570	4101007	4098498	4100854	-	PUS21	Cre03.g172950.t1.2		4099654,4099278,4099041,4098844,4098680,4097570	4101007,4099433,4099127,4098915,4098712,4098528	Also known as Centromere/microtubule binding protein, Centromere binding factor 5; belongs to TruB family of tRNA pseudouridylate synthases; Homologue of AtNAP57 and yeast CBF5, pseudouridine synthases involved in rRNA biogenesis and localized in the nucleolus (TruB) [PMID: 11833778]; ts-lethal mutant was isolated (PMID 29743196)
chr3	4101154	4103113	4101284	4102288	+	Cre03.g173000.t1.1	Cre03.g173000.t1.1		4101154,4102123	4101779,4103113	
chr3	4103130	4104905	4103580	4104870	-	Cre03.g173050.t1.2	Cre03.g173050.t1.2		4104680,4104409,4103966,4103130	4104905,4104555,4104210,4103805	
chr3	4106546	4113307	4106812	4112759	+	Cre03.g173100.t1.2	Cre03.g173100.t1.2		4106546,4107053,4107832,4108107,4108354,4108572,4108777,4109086,4109480,4109919,4110367,4110705,4111023,4111322,4111668,4111888,4112135,4112573	4106831,4107399,4107899,4108162,4108399,4108626,4108848,4109235,4109570,4110177,4110496,4110779,4111137,4111422,4111742,4111918,4112268,4113307	null-allele passenger mutation was isolated (PMID 29743196)
chr3	4113356	4115814	4113927	4115633	+	CSB19	Cre03.g173132.t1.1		4113356,4114156,4114847	4113979,4114751,4115814	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr3	4115876	4118457	4116089	4117890	+	Cre03.g173165.t1.1	Cre03.g173165.t1.1		4115876	4118457	
chr3	4118460	4120285	4118870	4119967	-	ERV2	Cre03.g173200.t1.2		4119353,4118460	4120285,4119102	Sulfhydryl oxidase.  Erv1/Alr family; possibly mitochondrial; also called Augmenter of liver regeneration in mammals = ALR.  Previously incorrectly annotated/switched as ERV1 (should have been ERV2)
chr3	4120337	4122705	4120765	4122513	-	Cre03.g173250.t1.1	Cre03.g173250.t1.1		4122489,4122031,4121478,4120337	4122705,4122261,4121733,4121295	
chr3	4122600	4127915	4123445	4127626	-	Cre03.g173300.t1.2	Cre03.g173300.t1.2		4127509,4127382,4126991,4126733,4126502,4126211,4125878,4125567,4125326,4125113,4124684,4124279,4123960,4122600	4127915,4127410,4127140,4126744,4126544,4126303,4126006,4125632,4125372,4125129,4124852,4124455,4124092,4123733	
chr3	4122760	4127915	4123445	4127626	-	Cre03.g173300.t2.1	Cre03.g173300.t2.1		4127509,4127382,4126991,4126733,4126502,4126211,4125878,4125567,4125326,4125113,4124684,4124279,4123960,4122760	4127915,4127410,4127140,4126744,4126544,4126303,4126006,4125632,4125372,4125129,4124852,4124455,4124092,4123733	
chr3	4128116	4132643	4128364	4131936	+	ANK22b	Cre03.g173350.t1.2		4128116,4128575,4128981,4129044,4129816,4130396,4130918,4131392,4131803	4128448,4128722,4128995,4129246,4129967,4130550,4131054,4131486,4132643	Protein of unknown function with ankyrin repeats; two splice variants are expected, a less abundant splicing isoform (PMID: 1283687) and a shorter, most abundant splicing isoform (PMID: 1283687)"
chr3	4128116	4132643	4128364	4131936	+	ANK22	Cre03.g173350.t2.1		4128116,4128575,4129044,4129816,4130396,4130918,4131392,4131803	4128448,4128722,4129246,4129967,4130550,4131054,4131486,4132643	Protein of unknown function with ankyrin repeats; two splice variants are expected, a less abundant splicing isoform (PMID: 1283687) and a shorter, most abundant splicing isoform (PMID: 1283687)"
chr3	4132736	4137447	4132928	4136858	+	Cre03.g173400.t1.1	Cre03.g173400.t1.1		4132736,4133021,4133301,4133564,4133983,4134312,4134564,4134966,4135506,4135777,4136765	4132942,4133126,4133423,4133758,4134133,4134403,4134827,4135190,4135622,4136574,4137447	
chr3	4137450	4142475	4138136	4142410	-	Cre03.g173450.t1.1	Cre03.g173450.t1.1		4142286,4141682,4141444,4141192,4140684,4140481,4140184,4139884,4139407,4139059,4137450	4142475,4141965,4141497,4141281,4140904,4140536,4140257,4139972,4139715,4139109,4138863	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr3	4142576	4145734	4142723	4145315	+	Cre03.g173500.t1.1	Cre03.g173500.t1.1		4142576,4142962,4144077,4145130	4142783,4143892,4144898,4145734	
chr3	4145870	4148945	4147152	4148714	-	Cre03.g173550.t1.2	Cre03.g173550.t1.2		4148590,4148019,4145870	4148945,4148232,4147861	
chr3	4149046	4156517	4149089	4156094	+	Cre03.g173600.t1.2	Cre03.g173600.t1.2		4149046,4149299,4149672,4149942,4150302,4150543,4151011,4151474,4151939,4152326,4153132,4153721,4154398,4155848	4149200,4149419,4149755,4150000,4150359,4150722,4151386,4151633,4152086,4152951,4153522,4154100,4155594,4156517	
chr3	4156680	4159965	4157317	4159770	-	Cre03.g173650.t1.2	Cre03.g173650.t1.2		4158183,4157902,4156680	4159965,4158003,4157656	
chr3	4161665	4168135	4161988	4167744	-	KIL14	Cre03.g173700.t1.1		4167729,4167592,4167399,4167102,4166760,4166427,4166172,4165665,4165466,4165178,4164594,4163450,4163139,4162953,4162149,4161665	4168135,4167637,4167495,4167157,4166884,4166498,4166304,4165990,4165520,4165335,4165046,4164499,4163330,4163033,4162796,4161997	Putative kinesin motor-like protein, closest match to kinesin-14 family.  No sequence gaps to account for poor assignment by HMM search; null-allele passenger mutation was isolated (PMID 29743196)
chr3	4168387	4172990	4168729	4172797	-	Cre03.g173750.t1.1	Cre03.g173750.t1.1		4172774,4172432,4172058,4171849,4170558,4168387	4172990,4172591,4172163,4171894,4171634,4170368	
chr3	4173086	4176747	4173192	4176371	+	PDX2	Cre03.g173800.t1.2		4173086,4173508,4174288,4174613,4174897,4175273,4175721,4176113	4173355,4173821,4174432,4174696,4175078,4175450,4175812,4176747	Involved in vitamin B6 biosynthesis; similar to putative ethylene-inducible protein
chr3	4173086	4176747	4173192	4176371	+	PDX2	Cre03.g173800.t2.1		4173086,4173294,4173508,4174288,4174613,4174897,4175273,4175721,4176113	4173236,4173355,4173821,4174432,4174696,4175078,4175450,4175812,4176747	Involved in vitamin B6 biosynthesis; similar to putative ethylene-inducible protein
chr3	4179375	4184046	4179719	4183439	+	Cre03.g173850.t1.1	Cre03.g173850.t1.1		4179375,4180522,4181619	4180454,4181476,4184046	
chr3	4184048	4187874	4184931	4187504	-	Cre03.g173900.t1.2	Cre03.g173900.t1.2		4187375,4187224,4186801,4186467,4185531,4184048	4187874,4187304,4187112,4186589,4185719,4185204	
chr3	4188085	4193226	4188563	4193080	+	Cre03.g173950.t1.1	Cre03.g173950.t1.1		4188085,4188904,4189203,4189474,4190986,4191524,4191933,4192512,4192855	4188709,4188979,4189268,4190049,4191159,4191634,4192393,4192683,4193226	
chr3	4193229	4200054	4193744	4199967	-	EFG11	Cre03.g174000.t1.1		4198919,4198430,4197997,4197572,4197037,4196684,4196340,4195956,4195665,4195143,4194712,4194250,4193229	4200054,4198521,4198108,4197699,4197203,4196771,4196480,4196081,4195756,4195359,4194920,4194445,4193945	similar to GTP-binding protein LepA
chr3	4200175	4215235	4200499	4213395	+	MRP4	Cre03.g174050.t1.2		4200175,4200953,4201629,4202115,4202347,4202807,4203238,4203735,4204212,4204538,4204960,4205271,4205773,4206202,4206616,4206863,4207642,4208062,4208509,4209083,4209586,4209875,4210128,4210649,4210875,4211237,4211510,4211998,4212334,4212637,4213109	4200620,4201218,4201776,4202181,4202537,4202952,4203410,4203879,4204296,4204767,4205061,4205397,4205851,4206304,4206705,4207399,4207767,4208141,4208678,4209333,4209663,4209916,4210277,4210722,4210956,4211296,4211686,4212126,4212441,4212707,4215235	putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683
chr3	4215285	4224936	4215380	4223610	+	Cre03.g174076.t1.1	Cre03.g174076.t1.1		4215285,4217602,4220062,4220846,4222071	4217484,4219946,4220611,4221657,4224936	
chr3	4226335	4245546	4226842	4243959	+	Cre03.g174100.t1.1	Cre03.g174100.t1.1		4226335,4226602,4227128,4228369,4229060,4229295,4230707,4231302,4233973,4234454,4234810,4236075,4236470,4237082,4237406,4242978	4226427,4227036,4228223,4228890,4229154,4230625,4231047,4233806,4234254,4234638,4235832,4236324,4236736,4237217,4242843,4245546	
chr3	4226335	4245546	4226842	4243959	+	Cre03.g174100.t2.1	Cre03.g174100.t2.1		4226335,4227128,4228369,4229060,4229295,4230707,4231302,4233973,4234454,4234810,4236075,4236470,4237082,4237406,4242978	4227036,4228223,4228890,4229154,4230625,4231047,4233806,4234254,4234638,4235832,4236324,4236736,4237217,4242843,4245546	
chr3	4226335	4245546	4226842	4243959	+	Cre03.g174100.t3.1	Cre03.g174100.t3.1		4226335,4227128,4228369,4229060,4229360,4230707,4231302,4233973,4234454,4234810,4236075,4236470,4237082,4237406,4242978	4227036,4228223,4228890,4229171,4230625,4231047,4233806,4234254,4234638,4235832,4236324,4236736,4237217,4242843,4245546	
chr3	4245559	4250514	4246167	4250305	-	Cre03.g174150.t1.1	Cre03.g174150.t1.1		4250066,4249652,4249167,4248932,4248634,4248182,4247759,4247175,4246664,4245559	4250514,4249754,4249452,4249034,4248680,4248378,4247940,4247472,4246870,4246383	
chr3	4250625	4254618	4250710	4254069	+	Cre03.g174200.t1.1	Cre03.g174200.t1.1		4250625,4251232,4251815,4252214,4253376,4253965	4251094,4251531,4251979,4253201,4253840,4254618	
chr3	4254625	4257419	4255067	4257201	-	FAP111	Cre03.g174250.t1.2		4257062,4256400,4256021,4255706,4255413,4254625	4257419,4256752,4256083,4255721,4255488,4255212	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr3	4257592	4259836	4257661	4259119	+	Cre03.g174300.t1.2	Cre03.g174300.t1.2		4257592,4257901,4258758,4259059	4257726,4258480,4258853,4259836	
chr3	4259915	4263606	4260219	4261755	+	PWR2	Cre03.g174350.t1.2		4259915,4260630	4260393,4263606	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr3	4263655	4266596	4263897	4265723	+	CDO1	Cre03.g174400.t1.2		4263655,4264312,4264787,4265123,4265513	4263963,4264539,4264891,4265323,4266596	
chr3	4268031	4271424	4268666	4271256	-	PWR1	Cre03.g174450.t1.1		4271159,4270467,4270063,4269582,4268031	4271424,4270987,4270260,4269801,4269427	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr3	4271489	4273934	4271560	4273902	-	CYCC1	Cre03.g174476.t1.2		4273870,4273676,4273548,4273250,4272633,4272302,4271748,4271489	4273934,4273782,4273587,4273457,4272709,4272482,4271995,4271560	C-type cyclin, CDK8 kinase-activating protein
chr3	4274000	4284334	4274635	4284121	-	HDZ1	Cre03.g174500.t1.1		4284096,4283720,4283509,4282563,4282183,4281715,4281431,4280459,4279954,4279494,4278612,4278065,4277537,4277138,4276578,4276095,4275725,4275440,4274000	4284334,4283797,4283582,4283337,4282358,4281862,4281569,4281206,4280184,4279601,4279148,4278421,4277902,4277408,4276833,4276311,4275900,4275573,4275270	HOXDDT class homeodomain protein; characterized by Lee et al. 28 [PMID: 1851927], given the name HDZ1.  Volvox ortholog is 127455.
chr3	4287344	4288954	4287655	4288490	-	Cre03.g174525.t1.1	Cre03.g174525.t1.1		4288367,4287344	4288954,4288036	
chr3	4289425	4290375	4289930	4290213	+	Cre03.g174550.t1.2	Cre03.g174550.t1.2		4289425	4290375	
chr3	4290535	4293912	4291212	4293028	-	Cre03.g174600.t1.1	Cre03.g174600.t1.1		4293790,4293399,4292641,4292297,4292024,4291586,4291381,4290535	4293912,4293542,4293114,4292405,4292154,4291672,4291440,4291254	
chr3	4294055	4295626	4294204	4295121	+	CSB20	Cre03.g174650.t1.2		4294055,4294890,4295121	4294630,4295003,4295626	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr3	4297019	4300644	4297355	4300541	-	Cre03.g174672.t1.2	Cre03.g174672.t1.2		4300149,4298927,4298596,4297019	4300644,4298998,4298708,4298374	
chr3	4300815	4303626	4301098	4303446	+	Cre03.g174700.t1.1	Cre03.g174700.t1.1		4300815,4302747	4302496,4303626	
chr3	4303635	4307064	4304271	4306945	-	CYN26	Cre03.g174750.t1.2		4306654,4306227,4305931,4305567,4305354,4305162,4304607,4303635	4307064,4306382,4306023,4305643,4305405,4305217,4304724,4304370	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; chloroplast thylakoid lumen; similar to At1g74070 (AtCYP26-2
chr3	4307185	4313676	4307442	4312822	+	Cre03.g174800.t1.2	Cre03.g174800.t1.2		4307185,4307760,4308377,4308845,4309180,4309828,4310414,4310685,4310985,4311387,4312102,4312552	4307490,4307990,4308506,4308954,4309562,4310135,4310541,4310791,4311179,4311880,4312361,4313676	
chr3	4313725	4317407	4313995	4316251	+	CGL111	Cre03.g174850.t1.2		4313725,4313968,4314181,4314398,4314695,4314997,4315250,4315573	4313871,4314091,4314294,4314564,4314839,4315095,4315417,4317407	Conserved in the Green Lineage
chr3	4317925	4328331	4318189	4328125	+	Cre03.g174900.t1.1	Cre03.g174900.t1.1		4317925,4318318,4318492,4320319,4320519,4320805,4321038,4321407,4321985,4322325,4322755,4323086,4323424,4323901,4324244,4324785,4325253,4325667,4325968,4326202	4318246,4318353,4320148,4320374,4320624,4320910,4321226,4321761,4322182,4322479,4322947,4323229,4323560,4324042,4324575,4325079,4325386,4325793,4326036,4328331	
chr3	4328395	4336971	4328494	4336515	+	TGL7	Cre03.g174950.t1.1		4328395,4328763,4329096,4329488,4329862,4331865,4332663,4333081,4335253,4335603,4336028,4336401	4328602,4328898,4329303,4329622,4331727,4332338,4332883,4335096,4335397,4335780,4336150,4336971	
chr3	4337035	4341035	4337146	4340802	+	RPH3	Cre03.g175000.t1.2		4337035,4337287,4337500,4337925,4338876,4339263,4339707,4340133	4337206,4337352,4337671,4338022,4338989,4339373,4339940,4341035	Homologue of S. cerevisiae Rrp45, which is a core component of the exosome, a complex of multiple 3'-5' exoribonucleases involved in RNA processing and RNA degradation. Homologue of RNase PH.
chr3	4341039	4352564	4342249	4352428	-	Cre03.g175050.t1.1	Cre03.g175050.t1.1		4352291,4351068,4350906,4350681,4350119,4349760,4349155,4348647,4348440,4347981,4347722,4347509,4347227,4346787,4346519,4346238,4345839,4345550,4344970,4344553,4344263,4343891,4343557,4343308,4343063,4342626,4341039	4352564,4351243,4350964,4350800,4350334,4349884,4349631,4348767,4348489,4348284,4347772,4347562,4347330,4346923,4346592,4346345,4346015,4345620,4345246,4344706,4344355,4344096,4343682,4343442,4343128,4342838,4342333	weakly similar to transient receptor potential ion channel
chr3	4352705	4358296	4352927	4357500	+	Cre03.g175100.t1.1	Cre03.g175100.t1.1		4352705,4353369,4353541,4353837,4354200,4354530,4355182,4355441,4355796,4356144,4356717,4357055,4357401	4353135,4353423,4353601,4353995,4354292,4354677,4355240,4355521,4355957,4356504,4356899,4357170,4358296	
chr3	4352705	4358296	4352927	4357500	+	Cre03.g175100.t2.1	Cre03.g175100.t2.1		4352705,4353369,4353541,4353837,4354200,4354530,4355182,4355441,4355796,4356144,4356720,4357055,4357401	4353135,4353423,4353601,4353995,4354292,4354677,4355240,4355521,4355957,4356504,4356899,4357170,4358296	
chr3	4358299	4366554	4359072	4366413	-	TOC75	Cre03.g175200.t1.2		4365873,4364897,4363678,4363383,4362827,4362506,4362186,4361661,4361430,4361114,4360876,4360070,4359675,4358299	4366554,4364982,4363870,4363438,4363043,4362607,4362332,4361912,4361504,4361215,4360944,4360240,4359818,4359315	
chr3	4366665	4371490	4366764	4371008	+	SQS1	Cre03.g175250.t1.2		4366665,4366893,4367086,4367499,4367871,4368360,4369123,4369603,4370086,4370464,4370759	4366815,4366987,4367247,4367661,4367949,4368460,4369254,4369750,4370195,4370559,4371490	[EC: 2.5.1.21]; produces squalene from farnesyl diphosphate; has two putative transmembrane domains at the C-terminus; localized in ER
chr3	4366665	4371966	4366764	4371008	+	SQS1	Cre03.g175250.t2.1		4366665,4366893,4367086,4367499,4367871,4368360,4369123,4369603,4370086,4370464,4370759	4366815,4366987,4367247,4367661,4367949,4368460,4369254,4369750,4370195,4370559,4371966	[EC: 2.5.1.21]; produces squalene from farnesyl diphosphate; has two putative transmembrane domains at the C-terminus; localized in ER
chr3	4372220	4375401	4372307	4375090	+	Cre03.g175300.t1.1	Cre03.g175300.t1.1		4372220,4372795,4373139,4373656,4373804,4374153,4374477,4375037	4372571,4372874,4373334,4373698,4373996,4374302,4374811,4375401	
chr3	4375437	4379559	4375944	4379223	-	LMR2	Cre03.g175351.t1.1		4379121,4378667,4378528,4377985,4377464,4377164,4376697,4376292,4375437	4379559,4378744,4378566,4378135,4377843,4377317,4377040,4376445,4376000	protein of unknown function, contains LysM-domains which are found in a variety of enzymes involved in bacterial cell wall degradation; the domain may have a general peptidoglycan binding function
chr3	4379722	4386157	4380796	4386047	-	PGI1	Cre03.g175400.t1.2		4385910,4385697,4385407,4384927,4384589,4384166,4383753,4383484,4383177,4382850,4382494,4382167,4381827,4381476,4381104,4379722	4386157,4385748,4385498,4385038,4384717,4384353,4383952,4383544,4383297,4382996,4382605,4382330,4382009,4381544,4381205,4380868	PGI, phosphohexose isomerase, glucose-6-phosphate isomerase [EC:5.3.1.9]; belongs to sugar isomerase (SIS) family; ts-lethal mutant was isolated
chr3	4379722	4386157	4380796	4386047	-	PGI1	Cre03.g175400.t2.1		4385910,4385697,4385407,4384927,4384589,4384166,4383753,4383484,4383177,4382850,4382494,4382167,4381827,4381476,4381104,4379722	4386157,4385748,4385492,4385038,4384717,4384353,4383952,4383544,4383297,4382996,4382605,4382330,4382009,4381544,4381205,4380868	PGI, phosphohexose isomerase, glucose-6-phosphate isomerase [EC:5.3.1.9]; belongs to sugar isomerase (SIS) family; ts-lethal mutant was isolated
chr3	4386280	4388059	4386687	4387620	-	Cre03.g175451.t1.1	Cre03.g175451.t1.1		4387599,4387347,4386986,4386280	4388059,4387415,4387009,4386807	
chr3	4388114	4390679	4388643	4390647	-	Cre03.g175500.t1.2	Cre03.g175500.t1.2		4390612,4390291,4390077,4389925,4389712,4389312,4388927,4388114	4390679,4390404,4390137,4389966,4389772,4389389,4388982,4388706	
chr3	4390790	4397911	4390988	4397443	+	Cre03.g175550.t1.1	Cre03.g175550.t1.1		4390790,4391383,4391673,4392059,4392303,4394543	4391148,4391443,4391838,4392124,4394331,4397911	
chr3	4398800	4400212	4399242	4399714	+	Cre03.g175584.t1.2	Cre03.g175584.t1.2		4398800	4400212	
chr3	4400340	4417459	4401203	4415292	+	Cre03.g175600.t1.1	Cre03.g175600.t1.1		4400340,4401188,4401521,4403627,4404471,4406007,4406350,4406565,4408471,4409095	4401056,4401332,4403514,4404193,4405812,4406225,4406385,4408276,4408961,4417459	
chr3	4419011	4432209	4419997	4431855	-	Cre03.g175650.t1.1	Cre03.g175650.t1.1		4431733,4431579,4430894,4430395,4429964,4429487,4429098,4428736,4428451,4427952,4426399,4426020,4425637,4423527,4423014,4419011	4432209,4431645,4431416,4430738,4430271,4429795,4429360,4428937,4428577,4428103,4427850,4426233,4425930,4425505,4423421,4422878	
chr3	4432734	4438279	4433340	4438129	-	Cre03.g175700.t1.2	Cre03.g175700.t1.2		4438053,4437722,4437229,4436813,4436419,4436103,4435625,4435088,4434409,4434065,4432734	4438279,4437797,4437307,4436995,4436553,4436249,4435820,4435489,4434870,4434197,4433503	
chr3	4438377	4443709	4438996	4443642	-	Cre03.g175750.t1.2	Cre03.g175750.t1.2		4443590,4443042,4442593,4442283,4441778,4441479,4440998,4440690,4440124,4439757,4439391,4438377	4443709,4443170,4442771,4442387,4441876,4441530,4441302,4440747,4440422,4439804,4439470,4439102	
chr3	4449754	4452409	4450181	4452355	-	RRM16	Cre03.g175800.t1.1		4452133,4451589,4451096,4449754	4452409,4452056,4451260,4450901	
chr3	4452510	4456331	4452537	4456251	+	Cre03.g175850.t1.1	Cre03.g175850.t1.1		4452510,4452816,4453294,4453646,4453843,4454062,4454326,4454627,4455263,4455661,4456056	4452572,4453121,4453500,4453702,4453934,4454168,4454442,4454845,4455439,4455792,4456331	Endonuclease/exonuclease/phosphatase family protein
chr3	4456390	4461361	4457187	4460886	+	Cre03.g175851.t1.2	Cre03.g175851.t1.2		4456390,4457131,4460194,4460712	4456927,4459896,4460487,4461361	
chr3	4461363	4474509	4461779	4474420	-	Cre03.g175926.t1.1	Cre03.g175926.t1.1		4474339,4473978,4473614,4472925,4470664,4469699,4467534,4466885,4465979,4462963,4461363	4474509,4474209,4473685,4473158,4471707,4470566,4468636,4467174,4466772,4465816,4462820	
chr3	4475000	4478806	4475757	4477039	+	Cre03.g176000.t1.2	Cre03.g176000.t1.2		4475000,4475710,4476103	4475464,4475919,4478806	
chr3	4479027	4481829	4479383	4481731	-	Cre03.g176050.t1.2	Cre03.g176050.t1.2		4481434,4481079,4480676,4480300,4479775,4479027	4481829,4481213,4480843,4480429,4480010,4479488	
chr3	4481970	4484947	4482087	4484170	+	Cre03.g176100.t1.2	Cre03.g176100.t1.2		4481970,4482255,4482851,4483197,4483656,4484137	4482126,4482551,4482951,4483251,4483895,4484947	
chr3	4485713	4487523	4486196	4486821	+	Cre03.g176150.t1.2	Cre03.g176150.t1.2		4485713,4486185	4485859,4487523	
chr3	4487642	4492199	4488049	4492104	-	Cre03.g176200.t1.2	Cre03.g176200.t1.2		4491574,4491106,4490742,4489941,4489428,4487642	4492199,4491307,4490867,4490531,4489799,4489243	
chr3	4492540	4496122	4492680	4495481	+	ATPVD1	Cre03.g176250.t1.2		4492540,4492807,4493005,4493256,4494300,4494804,4495265	4492729,4492904,4493121,4493360,4494575,4494998,4496122	Vacuolar H+ ATPase V0 sector, subunit D, similar to gi 12585473 sp Q9LX65 VATH_ARATH[12585473] from Arabidopsis
chr3	4496330	4501451	4496481	4501435	+	Cre03.g176300.t1.1	Cre03.g176300.t1.1		4496330,4496951,4497513,4498074,4498334,4499141,4500173,4500690,4501004,4501340	4496778,4497359,4497775,4498193,4498932,4499667,4500314,4500794,4501095,4501451	
chr3	4501500	4507889	4501995	4505508	+	Cre03.g176325.t1.2	Cre03.g176325.t1.2		4501500,4504734,4505089,4505370	4504525,4504831,4505145,4507889	
chr3	4508130	4512671	4508244	4512088	+	PLAP5	Cre03.g176350.t1.2		4508130,4508619,4508763,4509058,4509386,4509818,4510256,4510429,4510760,4511022,4511517,4511920	4508385,4508716,4508789,4509188,4509510,4509949,4510342,4510515,4510816,4511180,4511645,4512671	PAP-fibrillin family protein
chr3	4508130	4512671	4508244	4512088	+	PLAP5	Cre03.g176350.t2.1		4508130,4508619,4509058,4509386,4509818,4510256,4510429,4510760,4511022,4511517,4511920	4508385,4508716,4509188,4509510,4509949,4510342,4510515,4510816,4511180,4511645,4512671	PAP-fibrillin family protein
chr3	4513120	4520551	4513412	4518229	+	Cre03.g176400.t1.1	Cre03.g176400.t1.1		4513120,4515097,4515489,4516088,4516529,4516964,4517275,4517671	4514271,4515219,4515727,4516207,4516720,4517036,4517435,4520551	
chr3	4520554	4521529	4520796	4521037	-	Cre03.g176440.t1.2	Cre03.g176440.t1.2		4521315,4520554	4521529,4521084	
chr3	4521870	4523179	4522334	4523060	-	Cre03.g176450.t1.1	Cre03.g176450.t1.1		4523009,4522819,4521870	4523179,4522933,4522621	
chr3	4521870	4523179	4522334	4523060	-	Cre03.g176450.t2.1	Cre03.g176450.t2.1		4523054,4522819,4521870	4523179,4522933,4522621	
chr3	4523435	4526549	4523878	4526467	-	Cre03.g176500.t1.2	Cre03.g176500.t1.2		4526233,4525870,4523435	4526549,4526085,4523923	
chr3	4526650	4534476	4526693	4534109	+	PRMT5	Cre03.g176550.t1.1		4526650,4526912,4527314,4527766,4528294,4529350,4529906,4530946,4531352,4532898,4533190,4533709	4526783,4527067,4527496,4527915,4528509,4529580,4529962,4531025,4531670,4533023,4533299,4534476	Protein-/Histone-arginine N-methyltransferase PRMT5 class, ChromDB PRMT344.  S-adenosyl-L-methionine-dependent methyltransferase
chr3	4534580	4537451	4534730	4536173	+	FAP374	Cre03.g176600.t1.2		4534580,4535181	4534911,4537451	
chr3	4537484	4544629	4538201	4544486	-	MYSM1	Cre03.g176651.t1.1		4544254,4543427,4542725,4542023,4541476,4540962,4540493,4539984,4539579,4537484	4544629,4543809,4542959,4542438,4541943,4541090,4540623,4540121,4539714,4539314	
chr3	4544740	4548151	4544796	4547571	+	CPL4	Cre03.g176700.t1.1		4544740,4545216,4545725,4546393,4547415	4544951,4545551,4546112,4546815,4548151	Putative mitochondrial ribosomal protein S29
chr3	4548212	4551905	4550284	4551748	-	Cre03.g176750.t1.2	Cre03.g176750.t1.2		4551700,4551193,4548212	4551905,4551345,4551049	
chr3	4552050	4556321	4552487	4556026	+	FPG1	Cre03.g176800.t1.1		4552050,4552974,4553591,4554039,4554505,4555050,4555694	4552656,4553253,4553709,4554220,4554831,4555446,4556321	Involved in folate biosynthesis
chr3	4556346	4559889	4556916	4559699	-	NAP1	Cre03.g176833.t1.1		4559656,4559420,4558977,4558550,4558275,4557837,4557428,4556346	4559889,4559520,4559191,4558704,4558411,4557964,4557525,4557182	Monomeric inner arm axonemal protein that can functionally replace actin for species b and g assembly; expression is activated in conventional actin (ida5) mutants [PMID: 97999]; nap1 null mutants are sensitive to the actin depolymerizing drug Latrunculin B (PMID: 26715672)
chr3	4559964	4573589	4560216	4573449	-	Cre03.g176866.t1.1	Cre03.g176866.t1.1		4573261,4572423,4571363,4561863,4561372,4560916,4559964	4573589,4572912,4571947,4562054,4561676,4561112,4560611	has homologs in Chlorophyceae
chr3	4573690	4585651	4573835	4584678	+	Cre03.g176900.t1.1	Cre03.g176900.t1.1		4573690,4574729,4575573,4575976,4577561,4578304,4578875,4581491,4584659	4573947,4575049,4575625,4577273,4578009,4578494,4581240,4584457,4585651	
chr3	4573690	4585651	4573835	4584462	+	Cre03.g176900.t2.1	Cre03.g176900.t2.1		4573690,4574729,4575573,4575976,4577561,4578304,4578875,4581491	4573947,4575049,4575625,4577273,4578009,4578494,4581240,4585651	
chr3	4585656	4588309	4586009	4587327	-	Cre03.g176930.t1.1	Cre03.g176930.t1.1		4588094,4587956,4587286,4586751,4585656	4588309,4587970,4587341,4586814,4586417	null-allele passenger mutation was isolated (PMID 29743196)
chr3	4588364	4592679	4588735	4592550	-	Cre03.g176961.t1.2	Cre03.g176961.t1.2		4592487,4592301,4591785,4590780,4588364	4592679,4592385,4592081,4591547,4590579	
chr3	4592734	4597679	4592877	4597635	-	Cre03.g177007.t1.1	Cre03.g177007.t1.1		4597612,4597381,4596718,4596288,4595011,4594554,4594069,4592734	4597679,4597432,4597161,4596451,4596013,4594723,4594337,4593275	
chr3	4597800	4610213	4598021	4609761	+	Cre03.g177053.t1.1	Cre03.g177053.t1.1		4597800,4598777,4599103,4599560,4600119,4600575,4600997,4601478,4601703,4602209,4602927,4603428,4603928,4604195,4604741,4605249,4605592,4606108,4606632,4607002,4607448,4607965,4608301,4608617,4609020,4609644	4598227,4598846,4599312,4599728,4600251,4600689,4601187,4601523,4601935,4602443,4603073,4603558,4604018,4604467,4604958,4605321,4605838,4606358,4606715,4607157,4607573,4608108,4608432,4608757,4609112,4610213	
chr3	4610420	4614599	4610476	4614250	+	Cre03.g177100.t1.2	Cre03.g177100.t1.2		4610420,4611027,4611498,4612238,4612647,4612982,4613415,4613998	4610793,4611184,4611667,4612349,4612699,4613153,4613707,4614599	
chr3	4614650	4618681	4614738	4618340	+	Cre03.g177150.t1.2	Cre03.g177150.t1.2		4614650,4615888,4616418,4616737,4617018,4617290,4617587,4618082	4615706,4616042,4616587,4616848,4617070,4617461,4617879,4618681	
chr3	4619240	4624311	4619406	4622495	+	CRB3	Cre03.g177200.t1.2		4619240,4620551,4620903,4621718,4622249	4619739,4620647,4621291,4621963,4624311	RNA-binding protein of the CELF (CUGBP-ETR-3-like factors) family containing three RRM domains; spacer between RRM 2 and RRM 3 is rich in Met and Gly; subunit of the circadian RNA-binding protein CHLAMY 1 [PMID: 15190002]
chr3	4625010	4628371	4625086	4627757	+	Cre03.g177250.t1.2	Cre03.g177250.t1.2		4625010,4625450,4625778,4626280,4626594,4627274,4627639	4625261,4625518,4626034,4626411,4626953,4627413,4628371	contains a PAP2/haloperoxidase domain found in vanadium chloroperoxidases and related to phosphoesterases; closely related to nearby HAP4 and to distantly linked stress-induced HAP1 and HAP2
chr3	4628660	4631757	4628709	4631183	+	Cre03.g177300.t1.2	Cre03.g177300.t1.2		4628660,4629069,4629264,4629710,4630136,4630682,4631065	4628887,4629137,4629520,4629841,4630495,4630821,4631757	contains a PAP2/haloperoxidase domain found in vanadium chloroperoxidases and related to phosphoesterases; closely related to nearby HAP3 and to distantly linked stress-induced HAP1 and HAP2
chr3	4633480	4638463	4633636	4637488	+	Cre03.g177350.t1.1	Cre03.g177350.t1.1		4633480,4633983,4635127,4635491,4635922,4636394,4636896,4637302	4633790,4634111,4635230,4635566,4636132,4636569,4637038,4638463	
chr3	4638880	4655326	4639233	4654021	+	Cre03.g177400.t1.1	Cre03.g177400.t1.1		4638880,4639427,4639691,4640589,4641021,4641927,4642360,4642695,4642890,4643148,4643327,4645483,4645794,4646128,4649396,4650090	4639334,4639493,4640396,4640863,4641775,4642174,4642582,4642778,4642932,4643261,4645321,4645592,4645977,4649300,4649971,4655326	Contains periplasmic binding protein-like II domain and bacterial extracellular solute-binding (family 1) domain.  May be involved in solute transport and early steps of a signal transduction cascade
chr3	4655850	4660089	4656290	4658951	+	Cre03.g177450.t1.1	Cre03.g177450.t1.1		4655850,4656510,4656906,4657119,4657259,4657576,4657977,4658331,4658749	4656297,4656820,4656955,4657154,4657373,4657836,4658153,4658542,4660089	
chr3	4660534	4662439	4662100	4662382	-	Cre03.g177476.t1.1	Cre03.g177476.t1.1		4662293,4660534	4662439,4662206	
chr3	4662740	4665469	4662824	4664354	+	Cre03.g177500.t1.1	Cre03.g177500.t1.1		4662740,4663028,4663233,4663592,4663762,4663939,4664240	4662938,4663042,4663288,4663655,4663800,4664073,4665469	
chr3	4665570	4671929	4666035	4671066	+	Cre03.g177550.t1.2	Cre03.g177550.t1.2		4665570,4666244,4667742,4668309,4669307,4669668,4670900	4666146,4667590,4667891,4668521,4669473,4670711,4671929	
chr3	4673090	4676674	4673505	4676070	+	Cre03.g177600.t1.1	Cre03.g177600.t1.1		4673090,4673840,4674396,4674999	4673577,4674178,4674698,4676674	
chr3	4677020	4692312	4677294	4691449	+	Cre03.g177650.t1.2	Cre03.g177650.t1.2		4677020,4677891,4678245,4678708,4679305,4679632,4679869,4680211,4680725,4681089,4681457,4682016,4682570,4683042,4683376,4683742,4684013,4684560,4685019,4687446,4687671,4688386,4689183,4689682,4691449	4677372,4678067,4678568,4679115,4679421,4679751,4679987,4680407,4680804,4681218,4681776,4682203,4682726,4683206,4683483,4683844,4684413,4684850,4687293,4687516,4688243,4688994,4689493,4691164,4692312	
chr3	4693035	4696776	4693283	4696756	+	NIT2	Cre03.g177700.t1.1		4693035,4693799,4693995,4694362,4694756,4695148,4695369	4693397,4693849,4694132,4694571,4695038,4695229,4696776	Contains an RWPxRK box (but RWPxRQ); cloning of NIT2 by transposon tagging - PMID: 8394263. mRNA sequence: DQ311647. Note: this allele carries the nit2-137 mutation like all 137c strains
chr3	4696835	4700028	4696965	4698082	+	Cre03.g177711.t1.1	Cre03.g177711.t1.1		4696835	4700028	
chr3	4700185	4706086	4700531	4705460	+	Cre03.g177750.t1.1	Cre03.g177750.t1.1		4700185,4701223,4701552,4701953,4702306,4702516,4703062,4703423,4703834,4704316,4704694,4705241	4700615,4701320,4701663,4702022,4702352,4702719,4703144,4703519,4704001,4704456,4704993,4706086	MATE efflux family protein
chr3	4706099	4708184	4706555	4708030	-	Cre03.g177800.t1.1	Cre03.g177800.t1.1		4707896,4707611,4707167,4706099	4708184,4707697,4707383,4706780	
chr3	4708342	4709564	4708529	4709468	-	Cre03.g177826.t1.1	Cre03.g177826.t1.1		4709136,4708342	4709564,4708944	
chr3	4709619	4716174	4709806	4716102	-	Cre03.g177850.t1.2	Cre03.g177850.t1.2		4716091,4715757,4714157,4713667,4713151,4712777,4712452,4711928,4710781,4710384,4709619	4716174,4716001,4715540,4713786,4713310,4712851,4712676,4712170,4711745,4710557,4710122	
chr3	4716223	4720074	4716689	4719868	-	TOB38	Cre03.g177900.t1.2		4719784,4719625,4719177,4718800,4718499,4718003,4717449,4717094,4716223	4720074,4719694,4719351,4718863,4718603,4718170,4717598,4717231,4716776	mediates the insertion of beta-barrel proteins into the outer membrane of mitochondria. Also known as TOM37, METAXIN, and SAM38. Similar to yeast Tob38 (YHR083W) and to Arabidopsis Metaxin (At2g19080).
chr3	4720245	4731703	4720367	4731330	+	Cre03.g177950.t1.1	Cre03.g177950.t1.1		4720245,4720591,4720797,4721116,4721535,4723871,4724158,4724468,4724796,4725150,4725388,4725845,4726133,4726524,4726882,4727292,4727792,4728112,4728582,4728894,4729103,4729640	4720412,4720692,4721041,4721431,4723717,4724021,4724327,4724702,4725019,4725261,4725730,4725973,4726391,4726725,4727139,4727577,4727970,4728396,4728770,4728998,4729500,4731703	
chr3	4731759	4735114	4732015	4734906	-	Cre03.g178000.t1.1	Cre03.g178000.t1.1		4734781,4731759	4735114,4734590	
chr3	4735235	4736406	4735289	4736228	+	Cre03.g178014.t1.2	Cre03.g178014.t1.2		4735235,4735530,4735853,4736141	4735463,4735664,4735957,4736406	
chr3	4736455	4739360	4736540	4739057	+	MOT51	Cre03.g178050.t1.1		4736455,4737152,4737688,4738091,4738556	4736905,4737311,4737789,4738318,4739360	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr3	4739515	4740446	4739805	4740178	+	Cre03.g178075.t1.1	Cre03.g178075.t1.1		4739515	4740446	
chr3	4740495	4763191	4741013	4762750	+	Cre03.g178100.t1.1	Cre03.g178100.t1.1		4740495,4740635,4740794,4741007,4741236,4741475,4741855,4742112,4742466,4742801,4743105,4743434,4743691,4743867,4744276,4744573,4744779,4744995,4745238,4745536,4745923,4746239,4746514,4746803,4747207,4747476,4747880,4748137,4748429,4748934,4749303,4749653,4750046,4750436,4750748,4751196,4751451,4751778,4752149,4752426,4752659,4753056,4753275,4753689,4754148,4754598,4754834,4755115,4755428,4755605,4755855,4756313,4756544,4756791,4757133,4757425,4757885,4758286,4758515,4758909,4759293,4759618,4759890,4760185,4760574,4760926,4761299,4762486	4740520,4740665,4740862,4741080,4741311,4741718,4741983,4742264,4742647,4742945,4743233,4743564,4743745,4744055,4744364,4744649,4744867,4745087,4745386,4745787,4746051,4746368,4746701,4747062,4747347,4747734,4747976,4748220,4748625,4749105,4749447,4749887,4750220,4750569,4751006,4751283,4751608,4752035,4752269,4752502,4752850,4753130,4753461,4753927,4754431,4754680,4754958,4755258,4755512,4755651,4756138,4756401,4756633,4756957,4757276,4757690,4758092,4758397,4758699,4759106,4759428,4759703,4760060,4760394,4760781,4761077,4762186,4763191	
chr3	4764485	4766557	4764733	4766138	+	CAM1	Cre03.g178150.t1.1		4764485,4765171,4765403,4765689,4765905,4766075	4764818,4765328,4765483,4765753,4765944,4766557	identical to CALM_CHLRE; contains 4 EF-hand, calcium binding motifs; Calmodulin mediates the control of a large number of enzymes by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases
chr3	4766559	4769194	4766603	4768507	-	CCT10	Cre03.g178200.t1.1		4769109,4768934,4768749,4768363,4767775,4767516,4767164,4766834,4766683,4766559	4769194,4769007,4768857,4768671,4768186,4767610,4767349,4767001,4766707,4766608	
chr3	4769295	4771221	4769426	4770798	+	NUOS6	Cre03.g178250.t1.2		4769295,4770125,4770486,4770687	4769672,4770206,4770511,4771221	mitochondrial NADH:ubiquinone oxidoreductase 13 kD subunit (NDUFS6-like) gi 34334024 gb AAQ64639.1  [PMID: 15710684; PMID: 15450959]
chr3	4771229	4773404	4771700	4772882	-	Cre03.g178276.t1.2	Cre03.g178276.t1.2		4773217,4772801,4772451,4772230,4771229	4773404,4772990,4772549,4772268,4772078	
chr3	4773535	4776386	4773795	4775715	+	Cre03.g178300.t1.2	Cre03.g178300.t1.2		4773535,4774203,4774451,4775040	4774080,4774283,4774525,4776386	Putative pre-mRNA splicing factor, PRP38 family
chr3	4780759	4783824	4781964	4783586	-	FAP272	Cre03.g178350.t1.1		4783544,4783423,4782960,4782773,4782354,4782101,4780759	4783824,4783477,4783061,4782822,4782491,4782157,4781994	Flagellar Associated Protein similar to calmodulin; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384].  Possibly a phospholipid/glycerol acyltransferase
chr3	4784212	4787764	4784659	4787677	-	Cre03.g178400.t1.1	Cre03.g178400.t1.1		4787557,4787311,4786661,4786189,4785773,4785245,4784212	4787764,4787376,4787106,4786465,4785889,4785393,4785044	
chr3	4787811	4790074	4788632	4789448	-	CPN10	Cre03.g178450.t1.2		4789337,4789067,4787811	4790074,4789206,4788681	cochaperonin for CPN60 with MW of the mature protein of 10 kD; heptamers of Cpn10-like cochaperonins bind to one of the two Cpn60 heptameric rings and trigger ATP hydrolysis; CPN10 is closely related to mitochondrial CPN10 from Arabidopsis, thus very likely mitochondrial; PMID: 16143837
chr3	4790129	4792684	4790165	4792470	-	RIB43	Cre03.g178500.t1.2		4792386,4792246,4791585,4790954,4790129	4792684,4792319,4791837,4791274,4790474	
chr3	4792961	4796760	4793904	4796498	-	Cre03.g178550.t1.1	Cre03.g178550.t1.1		4796394,4796049,4795879,4795437,4794952,4794496,4792961	4796760,4796310,4795974,4795634,4795191,4794615,4794276	
chr3	4797077	4801984	4797934	4801854	-	TOP1	Cre03.g178600.t1.1		4801653,4801328,4800733,4800429,4799828,4799363,4799031,4798643,4798327,4797077	4801984,4801558,4800990,4800509,4800060,4799609,4799178,4798866,4798496,4798172	Similar to DNA topoisomerase I in Arabidopsis, At5g55310.
chr3	4802239	4808304	4803000	4808106	-	MCM6	Cre03.g178650.t1.1		4807528,4807208,4806885,4806561,4806138,4805773,4805501,4805224,4804861,4804516,4804051,4803810,4803406,4802239	4808304,4807286,4807047,4806664,4806371,4805931,4805665,4805339,4805041,4804689,4804265,4803951,4803575,4803208	Homology to MCM6 DNA replication protein; ts-lethal mutant block at S/M (PMID 29743196)
chr3	4808435	4816379	4808634	4815773	+	Cre03.g178700.t1.2	Cre03.g178700.t1.2		4808435,4808865,4809197,4809554,4809864,4810299,4810688,4811292,4811549,4811891,4812443,4813409,4814044,4814488,4814915	4808715,4808933,4809277,4809667,4810091,4810448,4810984,4811418,4811691,4812190,4813159,4813843,4814304,4814631,4816379	
chr3	4816535	4819866	4816622	4819047	+	Cre03.g178750.t1.1	Cre03.g178750.t1.1		4816535,4817158,4817654,4818016,4818486	4816952,4817247,4817832,4818217,4819866	
chr3	4820029	4824004	4820347	4823686	-	Cre03.g178850.t1.2	Cre03.g178850.t1.2		4823268,4822303,4821925,4821133,4820029	4824004,4823033,4822012,4821496,4820675	
chr3	4824105	4834351	4824188	4834204	+	PRD1	Cre03.g178900.t1.1		4824105,4824612,4825253,4826215,4826447,4826859,4827296,4828122,4829129,4829642,4829970,4830508,4831755,4832057,4832817	4824406,4825034,4825998,4826343,4826671,4827109,4827876,4828816,4829381,4829687,4830241,4831486,4831895,4832478,4834351	shows similarity to Arabidopsis PRD1, interacting with SPO11-1 to produce double-strand breaks during meiotic recombination
chr3	4834495	4841396	4834597	4841032	+	HEL17	Cre03.g178950.t1.2		4834495,4835192,4835599,4835984,4836368,4836769,4837100,4837320,4837688,4838165,4838454,4839466,4839876	4835020,4835290,4835780,4836104,4836555,4836880,4837165,4837430,4837863,4838298,4838624,4839538,4841396	DEAD/DEAH box DNA/RNA helicase
chr3	4841622	4845224	4842638	4845111	-	Cre03.g179000.t1.1	Cre03.g179000.t1.1		4844393,4843908,4843333,4842973,4841622	4845224,4844137,4843551,4843155,4842767	
chr3	4845375	4847696	4845703	4847378	+	Cre03.g179050.t1.2	Cre03.g179050.t1.2		4845375,4846185,4847071	4845991,4846771,4847696	
chr3	4847745	4850798	4847906	4850515	+	UFD1b	Cre03.g179100.t1.2		4847745,4848377,4848715,4849441,4849879	4848092,4848502,4849116,4849536,4850798	contains UBX domain
chr3	4850965	4855076	4851185	4853621	+	Cre03.g179150.t1.2	Cre03.g179150.t1.2		4850965,4851544,4852364,4852904,4853292,4853546	4851398,4852037,4852604,4853146,4853366,4855076	
chr3	4855255	4859166	4855520	4857637	+	Cre03.g179200.t1.2	Cre03.g179200.t1.2		4855255,4855847,4856658,4857039,4857511	4855712,4856374,4856873,4857293,4859166	
chr3	4859843	4864355	4860091	4862903	+	Cre03.g179250.t1.2	Cre03.g179250.t1.2		4859843,4860349,4860543,4860747,4861798,4862041,4862473,4862801	4860151,4860396,4860617,4861611,4861874,4862286,4862547,4864355	
chr3	4864357	4881403	4865060	4881234	-	Cre03.g179300.t1.1	Cre03.g179300.t1.1		4881193,4880914,4880570,4879538,4879212,4878619,4878246,4877732,4876812,4876409,4875891,4875104,4874831,4874453,4873898,4873451,4873134,4872649,4872200,4871833,4871284,4870995,4870636,4870177,4869623,4869057,4868457,4867967,4867604,4866125,4865847,4864357	4881403,4880948,4880724,4879753,4879295,4879004,4878408,4877836,4877151,4876546,4876019,4875249,4874938,4874533,4874050,4873631,4873261,4872807,4872435,4871914,4871427,4871103,4870769,4870458,4869856,4869224,4868706,4868335,4867821,4867323,4865942,4865598	SNF2 helicase with chromodomain.  ChromoDB CHR341
chr3	4864357	4881403	4865060	4881234	-	Cre03.g179300.t2.1	Cre03.g179300.t2.1		4881193,4880914,4880570,4879538,4879212,4878619,4878246,4877732,4876812,4876409,4875891,4875104,4874831,4874453,4873898,4873451,4873134,4872649,4872200,4871833,4871284,4870995,4870636,4870177,4869623,4869057,4868457,4867967,4867604,4866125,4865847,4864357	4881403,4880948,4880724,4879753,4879295,4879001,4878408,4877836,4877151,4876546,4876019,4875249,4874938,4874533,4874050,4873631,4873261,4872807,4872435,4871914,4871427,4871103,4870769,4870458,4869856,4869224,4868706,4868335,4867821,4867323,4865942,4865598	SNF2 helicase with chromodomain.  ChromoDB CHR341
chr3	4881478	4885233	4882043	4884751	-	MFT16	Cre03.g179350.t1.2		4884709,4884466,4884028,4883345,4883142,4882872,4882488,4881478	4885233,4884548,4884289,4883913,4883199,4882961,4882658,4882271	Permease
chr3	4885281	4888433	4885492	4888185	-	MFT17	Cre03.g179400.t1.2		4888047,4887437,4886688,4886464,4886215,4885875,4885281	4888433,4887688,4887265,4886521,4886304,4886045,4885711	Permease
chr3	4888544	4894345	4888849	4893320	+	SRR7	Cre03.g179450.t1.1		4888544,4889170,4889755,4890097,4890293,4890694,4890858,4891161,4891498,4891866,4892087,4892454,4892709,4892847	4888916,4889223,4889933,4890151,4890466,4890717,4890917,4891307,4891671,4891942,4892213,4892537,4892732,4894345	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr3	4894434	4898365	4894854	4897601	+	PFH13	Cre03.g179500.t1.2		4894434,4895357,4895705,4896242,4896449,4896707,4897049,4897389	4895105,4895483,4895974,4896283,4896553,4896884,4897153,4898365	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate
chr3	4898503	4902184	4898747	4901969	+	TF2H2	Cre03.g179550.t1.1		4898503,4898906,4899168,4899697,4900049,4900421,4900794,4901723	4898821,4898996,4899263,4899916,4900223,4900586,4901024,4902184	transcription factor TFIIH, 44 kDasubunit; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit; ts-lethal mutant was isolated (PMID 29743196)
chr3	4902274	4905999	4902354	4904282	+	Cre03.g179600.t1.2	Cre03.g179600.t1.2		4902274,4902497,4902719,4903099,4903290,4904174	4902400,4902589,4902806,4903136,4903969,4905999	
chr3	4906095	4909543	4906762	4909092	-	Cre03.g179650.t1.1	Cre03.g179650.t1.1		4909073,4908840,4906095	4909543,4908902,4908615	
chr3	4909988	4914043	4911198	4913992	-	Cre03.g179700.t1.2	Cre03.g179700.t1.2		4913932,4911674,4909988	4914043,4913755,4911564	
chr3	4914196	4918933	4915282	4918557	-	Cre03.g179750.t1.2	Cre03.g179750.t1.2		4918455,4916142,4915747,4914196	4918933,4918068,4915907,4915420	
chr3	4919034	4920573	4919094	4920107	+	LCI24	Cre03.g179800.t1.2		4919034,4919636,4919873	4919366,4919660,4920573	Low-CO2 inducible gene revealed by cDNA array analyses; SOSUI prediction: 3 transmembrane region; probably organelle-targetted; regulated by CCM1 [PMID: 15235119]
chr3	4921088	4921833	4921108	4921785	-	Cre03.g179820.t1.1	Cre03.g179820.t1.1		4921756,4921423,4921088	4921833,4921524,4921151	
chr3	4923796	4925673	4924114	4925150	-	Cre03.g179840.t1.1	Cre03.g179840.t1.1		4925352,4925131,4924815,4924616,4924305,4923796	4925673,4925173,4924885,4924660,4924340,4924150	
chr3	4923796	4925673	4924143	4925150	-	Cre03.g179840.t2.1	Cre03.g179840.t2.1		4925352,4925131,4924815,4924616,4924305,4923796	4925673,4925173,4924885,4924660,4924340,4924158	
chr3	4925772	4933375	4925899	4932838	+	Cre03.g179860.t1.1	Cre03.g179860.t1.1		4925772,4926049,4926408,4926784,4927277,4929546,4930041,4930391,4931408,4931881,4932437	4925914,4926156,4926605,4927002,4927693,4929724,4930200,4931133,4931531,4932073,4933375	
chr3	4933458	4936773	4934116	4936716	-	Cre03.g179880.t1.1	Cre03.g179880.t1.1		4935117,4933458	4936773,4934893	
chr3	4936944	4940745	4937081	4940245	+	Cre03.g179901.t1.1	Cre03.g179901.t1.1		4936944,4937219,4937805,4938311,4938867,4939564	4937147,4937448,4937904,4938469,4939223,4940745	
chr3	4940753	4947483	4942675	4946594	-	Cre03.g179921.t1.1	Cre03.g179921.t1.1		4946873,4946471,4940753	4947483,4946642,4946314	
chr3	4947844	4950795	4948048	4949836	+	Cre03.g179941.t1.1	Cre03.g179941.t1.1		4947844,4948161,4948501,4949039,4949370,4949634	4948094,4948233,4948685,4949148,4949425,4950795	
chr3	4950878	4970943	4951416	4970673	-	Cre03.g179961.t1.1	Cre03.g179961.t1.1		4970484,4970230,4969809,4969234,4968956,4968174,4967904,4967543,4967111,4966580,4966048,4965738,4965322,4964883,4964470,4964170,4963637,4963406,4962532,4961959,4961300,4960824,4960307,4959944,4959254,4959079,4957623,4957042,4956625,4956010,4955534,4955399,4954283,4953806,4953263,4952787,4952285,4951867,4950878	4970943,4970331,4969874,4969293,4969051,4968494,4968002,4967677,4967233,4966749,4966177,4965821,4965486,4965059,4964618,4964329,4963924,4963492,4962642,4962147,4961449,4961001,4960519,4960107,4959613,4959111,4957844,4957242,4956740,4956420,4955841,4955468,4954501,4954063,4953509,4952924,4952478,4952053,4951653	May contain additional coding sequence in intronic N-island PMID: 27175017; ts-lethal mutant block at S/M (PMID 29743196)
chr3	4971214	4974850	4971477	4973806	+	Cre03.g180000.t1.2	Cre03.g180000.t1.2		4971214,4971635,4972103,4972482,4972730,4973174,4973611	4971518,4971760,4972321,4972524,4972953,4973321,4974850	
chr3	4974908	4978113	4975171	4978016	-	Cre03.g180017.t1.1	Cre03.g180017.t1.1		4977971,4974908	4978113,4977784	
chr3	4975599	4978113	4975613	4978016	-	Cre03.g180017.t2.1	Cre03.g180017.t2.1		4977971,4975903,4975599	4978113,4977784,4975711	
chr3	4978214	4981778	4978389	4981554	+	Cre03.g180050.t1.1	Cre03.g180050.t1.1		4978214,4978590,4978958,4979302,4979560,4979831,4980182,4980940,4981313	4978509,4978679,4979047,4979370,4979632,4979979,4980713,4981096,4981778	
chr3	4981834	4984645	4982122	4984537	+	UNG2	Cre03.g180100.t1.2		4981834,4981952,4983360,4983733,4984060	4981852,4982991,4983451,4983851,4984645	Prevents mutagenesis by eliminating uracil from DNA  by cleaving the N-glycosylic bond and triggering base-excision repair.  Uracil bases occur from cytosine deamination or misincorporation of dUMP residues.
chr3	4984715	4988093	4985475	4987639	-	Cre03.g180151.t1.1	Cre03.g180151.t1.1		4987874,4987411,4986854,4986420,4986040,4984715	4988093,4987687,4987009,4986496,4986199,4985715	
chr3	4988204	4991065	4988313	4990943	+	Cre03.g180200.t1.2	Cre03.g180200.t1.2		4988204,4988456,4988921,4989342,4989909,4990228,4990697	4988342,4988635,4989048,4989647,4990054,4990506,4991065	
chr3	4991067	4994033	4991685	4993935	-	INO1	Cre03.g180250.t1.2		4993756,4993565,4993194,4992680,4991067	4994033,4993633,4993471,4992858,4992504	inositol-3-phosphate synthase activity; null-allele mutant was isolated (PMID 29743196)
chr3	4994178	4999053	4995153	4998822	-	SIR3	Cre03.g180300.t1.2		4998701,4998172,4997903,4997619,4997304,4996897,4996572,4996019,4995560,4994178	4999053,4998511,4997987,4997728,4997491,4997111,4996714,4996436,4995853,4995390	sulfite reductase, bacterial type, flavoprotein subunit (CysJ); has flavodoxin, FAD-binding and NADPH-binding domains, plus potential organelle-targeting sequence; some similarity to NADP-binding domain of FNR and to cytochrome p-450 reductases
chr3	4999153	5001145	4999380	4999982	+	CKS1	Cre03.g180350.t1.2		4999153,4999545,4999696,4999924	4999439,4999605,4999784,5001145	Cyclin dependent kinase regulatory subunit. Identified by Abe et al. 24 [PMID: 15459796] as NSG16, a gene expressed during nitrogen-starved gametogenesis; ts-lethal mutant block at S/M (PMID 29743196)
chr3	5001148	5002603	5001403	5002166	-	Cre03.g180400.t1.2	Cre03.g180400.t1.2		5001148	5002603	
chr3	5002933	5008263	5003962	5008177	-	FAP215	Cre03.g180450.t1.2		5007916,5007790,5007504,5007345,5006961,5006802,5006544,5006047,5005599,5005362,5005101,5004874,5004528,5004318,5002933	5008263,5007855,5007564,5007430,5007057,5006849,5006671,5006337,5005786,5005464,5005240,5004934,5004641,5004415,5004125	5'-nucleotidase and conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr3	5008609	5011135	5009208	5011047	-	Cre03.g180500.t1.1	Cre03.g180500.t1.1		5010928,5010686,5010319,5009979,5009681,5008609	5011135,5010847,5010423,5010044,5009808,5009543	
chr3	5011236	5016707	5011596	5015683	+	FPN2	Cre03.g180550.t1.2		5011236,5011784,5011930,5012181,5012418,5012639,5012921,5013171,5013366,5013798,5014080,5014317,5014544,5014782,5014929,5015273,5015478	5011632,5011819,5011959,5012238,5012506,5012735,5013042,5013224,5013656,5013985,5014182,5014464,5014623,5014808,5015030,5015322,5016707	Ecto-5'-nucleotidase precursor; 2,3-cyclic-nucleotide 2-phosphodiesterase; similar to nearby FPN2
chr3	5016756	5022097	5016801	5021948	+	FPN3	Cre03.g180600.t1.1		5016756,5017175,5017441,5017695,5017949,5018170,5018373,5018850,5019119,5019558,5019873,5020205,5020489,5020715,5020888,5021128,5021286,5021621	5016999,5017210,5017470,5017752,5018037,5018266,5018494,5018903,5019406,5019745,5019975,5020352,5020553,5020756,5020989,5021183,5021394,5022097	Ecto-5'-nucleotidase precursor; 2,3-cyclic-nucleotide 2-phosphodiesterase; similar to nearby FPN4
chr3	5022100	5030435	5023359	5030272	-	DEG7	Cre03.g180650.t1.1		5030165,5029936,5029616,5029103,5028876,5028552,5028158,5027552,5027222,5026917,5026468,5026200,5025463,5025144,5024881,5024636,5023932,5023662,5022100	5030435,5030051,5029681,5029242,5028958,5028717,5028436,5027662,5027380,5027101,5026786,5026302,5025818,5025272,5024999,5024744,5024471,5023745,5023515	DegP-type protease; three PDZ domains
chr3	5030541	5031617	5030671	5031597	+	Cre03.g180700.t1.1	Cre03.g180700.t1.1		5030541,5031102,5031418,5031577	5030715,5031221,5031464,5031617	
chr3	5031620	5039995	5032352	5039546	-	METE	Cre03.g180750.t1.2		5039515,5039069,5038626,5038232,5037797,5037208,5036894,5034350,5034067,5033858,5033498,5033129,5032737,5031620	5039995,5039295,5038860,5038440,5038025,5037648,5037053,5034488,5034171,5033929,5033681,5033279,5032869,5032484	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (EC 2.1.1.14); Vitamin B12-independent methionine synthase; homocysteine methylase; methyltetrahydropteroylpolyglutamate:homocysteine methyltransferase; (HMT); found in the flagellar proteome [PMID: 15998802]; repressed in the presence of cobalamine; Upregulated During Gametic Activation
chr3	5040076	5047635	5040650	5047067	-	HDA16	Cre03.g180800.t1.1		5047014,5046732,5046428,5046309,5046153,5045934,5045730,5045328,5044978,5044345,5044158,5043919,5043621,5043338,5043040,5042466,5041607,5041263,5040971,5040076	5047635,5046899,5046518,5046362,5046206,5046032,5045810,5045517,5045177,5044691,5044218,5044044,5043709,5043445,5043195,5042893,5042303,5041460,5041142,5040839	Histone deacetylase complex, SIN3 component, ChromDB SNT3401
chr3	5047982	5052892	5048588	5052628	-	SEC23A	Cre03.g180850.t1.2		5052487,5051950,5051460,5051176,5050870,5050580,5050288,5050031,5049574,5049160,5048917,5047982	5052892,5052249,5051816,5051316,5050989,5050765,5050445,5050179,5049875,5049360,5049009,5048729	Expressed Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex.
chr3	5053026	5055975	5053251	5055698	+	Cre03.g180900.t1.1	Cre03.g180900.t1.1		5053026,5053521,5053860,5054171	5053295,5053695,5054054,5055975	null-allele mutant was isolated (PMID 29743196)
chr3	5053026	5056089	5053251	5055698	+	Cre03.g180900.t2.1	Cre03.g180900.t2.1		5053026,5053521,5053860,5054171	5053295,5053695,5054054,5056089	null-allele mutant was isolated (PMID 29743196)
chr3	5062377	5064636	5062664	5064574	-	Cre03.g181000.t1.1	Cre03.g181000.t1.1		5064311,5063789,5063304,5062987,5062377	5064636,5064017,5063552,5063094,5062856	
chr3	5064770	5069915	5065780	5069580	-	Cre03.g181050.t1.1	Cre03.g181050.t1.1		5069550,5069082,5064770	5069915,5069450,5068936	
chr3	5069970	5076855	5071224	5076665	-	Cre03.g181100.t1.1	Cre03.g181100.t1.1		5076524,5076222,5075856,5075117,5074606,5073606,5073263,5071848,5071485,5069970	5076855,5076347,5075996,5075767,5074811,5074458,5073439,5072049,5071627,5071275	
chr3	5076986	5077675	5077051	5077328	+	DLL1	Cre03.g181150.t1.1		5076986	5077675	LC8 component of outer arm dynein, inner arm I1/f and RSP22 of radial spokes [PMID: 7744782;  PMID: 9585416];  Matsuo et al. 28 [PMID: 18334618] reported that the roc16 (rhythm of chloroplast) circadian rhythm mutant locus maps here; the mutation in CC-1331 (fla14) is in this gene but is not allelic to that in CC-1028 (the real pf5, which remains unidentified), in contrast to previous reports-
chr3	5078048	5082710	5078853	5082463	-	Cre03.g181200.t1.2	Cre03.g181200.t1.2		5082006,5081596,5081284,5080912,5080306,5079931,5079558,5079303,5078048	5082710,5081720,5081454,5081098,5080569,5080064,5079716,5079389,5079102	
chr3	5082838	5086252	5082958	5085547	+	CGLD13	Cre03.g181250.t1.1		5082838,5083319,5083598,5083996,5084304,5084661,5085187,5085389	5083078,5083393,5083681,5084099,5084458,5084788,5085268,5086252	Short chain dehydrogenase belonging to the extended family [PMID: 1223552]. Similarity to the N-terminal domain of Tic62 [PMID: 17374152 and PMID: 12426385]; related to nucleoside diphosphate sugar epimerase; putatively chloroplast targeted
chr3	5086275	5091125	5086934	5091057	-	SHKG1	Cre03.g181300.t1.2		5090852,5090623,5090106,5089571,5088708,5088041,5087661,5087301,5086275	5091125,5090756,5090305,5089721,5088917,5088202,5087821,5087437,5087113	predicted as mitochondrial by Target-P, but expected to be plastidic by homology
chr3	5091226	5093347	5091483	5092720	+	MRPL17	Cre03.g181350.t1.1		5091226,5091480,5091949,5092518	5091392,5091585,5092118,5093347	
chr3	5093350	5098025	5093703	5097911	-	ADC1	Cre03.g181400.t1.1		5097835,5097528,5096644,5096301,5094947,5094568,5094233,5093350	5098025,5097656,5097283,5096495,5096130,5094785,5094380,5094107	Putative aminodeoxychorismate (ADC) synthase (EC 6.3.5.8), based on similarity to tomato ADC synthase [GenBank AAR83121; PMID: 14745019], including a fusion of both PabA & PabB.
chr3	5098148	5102544	5098442	5102245	+	Cre03.g181450.t1.1	Cre03.g181450.t1.1		5098148,5098992,5099269,5099771,5100081,5100444,5100820,5101137,5101532,5101939	5098838,5099115,5099519,5099941,5100245,5100596,5101025,5101269,5101666,5102544	
chr3	5102636	5106777	5102792	5106111	+	STA11	Cre03.g181500.t1.2		5102636,5103941,5104507,5104884,5105425,5105940	5103641,5104103,5104641,5105043,5105701,5106777	alpha-1,4-glucanotransferase; transfers mostly maltosyl residues from a donor oligosaccharide to the nonreducing end of an acceptor.  Described by Wattebled et al. 23 [PMID:12746519].  Known formally as disproportionating enzyme (D-enzyme).  Note that t
chr3	5106826	5107307	5106892	5107181	+	Cre03.g181550.t1.2	Cre03.g181550.t1.2		5106826	5107307	
chr3	5107318	5109875	5109016	5109677	-	Cre03.g181576.t1.1	Cre03.g181576.t1.1		5107318	5109875	
chr3	5109930	5111815	5110097	5111765	-	Cre03.g181600.t1.1	Cre03.g181600.t1.1		5111568,5111224,5110718,5110470,5109930	5111815,5111434,5110960,5110590,5110276	
chr3	5111926	5114267	5112524	5113625	+	Cre03.g181650.t1.2	Cre03.g181650.t1.2		5111926,5112366,5112514,5112715,5112884,5113142,5113538	5112211,5112399,5112596,5112750,5112955,5113396,5114267	
chr3	5114524	5119345	5115575	5119209	-	Cre03.g181700.t1.1	Cre03.g181700.t1.1		5119071,5118719,5118443,5118089,5117009,5116695,5116445,5116105,5115816,5114524	5119345,5118940,5118529,5118247,5117908,5116817,5116568,5116286,5115950,5115626	
chr3	5119496	5122568	5119596	5121213	+	Cre03.g181750.t1.2	Cre03.g181750.t1.2		5119496,5119696,5119874,5120288,5120772	5119613,5119773,5120067,5120637,5122568	
chr3	5119496	5122977	5119596	5121213	+	Cre03.g181750.t2.1	Cre03.g181750.t2.1		5119496,5119696,5119874,5120288,5120772	5119613,5119773,5120067,5120637,5122977	
chr3	5126724	5128875	5127143	5128190	-	Cre03.g181800.t1.2	Cre03.g181800.t1.2		5128511,5128164,5127885,5127489,5126724	5128875,5128253,5128013,5127537,5127248	
chr3	5130986	5134559	5131449	5133808	+	Cre03.g181900.t1.2	Cre03.g181900.t1.2		5130986,5132085,5132466,5132703,5132906,5133275,5133808	5131549,5132129,5132541,5132755,5132958,5133649,5134559	
chr3	5134536	5138487	5134600	5136762	+	Cre03.g181950.t1.1	Cre03.g181950.t1.1		5134536,5135161,5135436,5135862,5136335,5136739	5134772,5135273,5135549,5136083,5136548,5138487	
chr3	5134606	5138487	5134642	5136762	+	Cre03.g181950.t2.1	Cre03.g181950.t2.1		5134606,5135161,5135436,5135862,5136335,5136739	5134772,5135273,5135549,5136083,5136548,5138487	
chr3	5138605	5140795	5139139	5140710	-	Cre03.g182000.t1.2	Cre03.g182000.t1.2		5140640,5140520,5140264,5139846,5139291,5138605	5140795,5140568,5140335,5139951,5139666,5139165	
chr3	5141022	5148351	5141976	5148207	-	Cre03.g182050.t1.2	Cre03.g182050.t1.2		5148088,5147659,5147294,5146911,5146532,5146139,5145897,5145577,5145246,5144949,5144558,5144211,5143035,5142781,5142326,5141022	5148351,5147869,5147382,5147037,5146658,5146292,5145948,5145681,5145338,5145095,5144697,5144302,5143136,5142842,5142556,5142129	
chr3	5148446	5151947	5148534	5151505	+	ITPK1	Cre03.g182100.t1.1		5148446,5148716,5148985,5149343,5149814,5150338,5150648,5151034	5148601,5148795,5149173,5149621,5150158,5150497,5150835,5151947	Forms 1,3,4,5-InsP4 and 1,3,4,6-InsP4 from 1,3,4-InsP3; also acts as an inositol-tetrakisphosphate 6-kinase
chr3	5152086	5155709	5152647	5154425	+	TEF8	Cre03.g182150.t1.2		5152086,5152854,5153151,5153570,5154264	5152752,5153051,5153231,5153816,5155709	
chr3	5155720	5169175	5156616	5169076	-	Cre03.g182200.t1.1	Cre03.g182200.t1.1		5169053,5168638,5168084,5167028,5166655,5166351,5166072,5165893,5165711,5165474,5164868,5163299,5162873,5162491,5162250,5161965,5161600,5161285,5161062,5160230,5159975,5157484,5155720	5169175,5168689,5168335,5167840,5166798,5166473,5166134,5165947,5165770,5165586,5165267,5164748,5163103,5162624,5162348,5162074,5161791,5161374,5161127,5160892,5160098,5159746,5157265	
chr3	5173681	5177648	5174626	5177536	-	PGM7	Cre03.g182300.t1.1		5177215,5176710,5176281,5175995,5175750,5175534,5175220,5174941,5173681	5177648,5176972,5176404,5176140,5175810,5175613,5175375,5174995,5174800	
chr3	5177769	5180216	5178026	5179872	+	Cre03.g182350.t1.2	Cre03.g182350.t1.2		5177769,5178358,5178682,5179011,5179237,5179758	5178139,5178463,5178774,5179088,5179359,5180216	
chr3	5180269	5183247	5180317	5182913	+	Cre03.g182400.t1.1	Cre03.g182400.t1.1		5180269,5180682,5180889,5181378,5181738,5182274,5182870	5180470,5180744,5181222,5181539,5182063,5182497,5183247	
chr3	5183399	5186590	5183814	5185995	+	Cre03.g182450.t1.2	Cre03.g182450.t1.2		5183399,5183789,5184466,5184879,5185326,5185809	5183464,5184120,5184528,5185073,5185598,5186590	
chr3	5186593	5192766	5187077	5192605	-	SRP72	Cre03.g182500.t1.2		5192502,5192204,5191898,5191416,5191003,5190739,5190435,5189872,5189433,5188928,5188569,5188014,5187516,5186593	5192766,5192340,5191933,5191568,5191095,5190847,5190579,5190217,5189552,5189155,5188730,5188322,5187695,5187197	Expressed Protein. Similar to the SRP72 subunit of the Signal Recognition Particle. Involved in ER protein translocation.
chr3	5192859	5197390	5192971	5197039	+	PNO3	Cre03.g182550.t1.1		5192859,5193197,5193431,5193656,5194044,5194272,5195409,5195793,5196172,5196637,5196943	5193095,5193279,5193526,5193727,5194109,5195222,5195657,5195906,5196315,5196672,5197390	null-allele mutant was isolated (PMID 29743196)
chr3	5197561	5198678	5197676	5198403	-	PCY1	Cre03.g182551.t1.2		5198118,5197561	5198678,5197829	
chr3	5198931	5202889	5199751	5202262	-	CPL1	Cre03.g182600.t1.1		5202666,5202249,5202001,5201668,5201236,5200894,5200562,5200335,5200018,5198931	5202889,5202333,5202089,5201709,5201466,5201030,5200711,5200386,5200143,5199847	
chr3	5203025	5207060	5203287	5205954	+	PGA1	Cre03.g182650.t1.2		5203025,5203455,5204185,5204647,5205261	5203332,5203967,5204402,5204986,5207060	
chr3	5207951	5214968	5209687	5214823	-	Cre03.g182700.t1.1	Cre03.g182700.t1.1		5214747,5214578,5210914,5207951	5214968,5214627,5214189,5210767	
chr3	5216867	5222060	5217171	5222040	+	Cre03.g182750.t1.2	Cre03.g182750.t1.2		5216867,5217583,5217992,5218280,5218787,5219230,5219690,5220130,5220511,5220843,5221123,5221446,5221655,5221905	5217449,5217674,5218079,5218575,5218960,5219400,5219907,5220222,5220609,5221010,5221207,5221516,5221756,5222060	
chr3	5222063	5226506	5223523	5226323	-	AGT2	Cre03.g182800.t1.1		5226235,5226047,5225602,5225317,5224921,5224743,5224338,5223892,5222063	5226506,5226135,5225769,5225487,5225067,5224796,5224549,5224099,5223700	Transaminase, Class III; similar to alanine-glyoxylate transaminase (EC 2.6.1.44); predicted by Target-P as mitochondrial; peroxisomal location supported by C-terminal PTS1 signal CKL
chr3	5226553	5229128	5226680	5229024	-	Cre03.g182850.t1.1	Cre03.g182850.t1.1		5228954,5228747,5228521,5227978,5227611,5227332,5226553	5229128,5228813,5228598,5228365,5227738,5227448,5227149	
chr3	5229265	5231530	5229390	5230887	+	Cre03.g182900.t1.2	Cre03.g182900.t1.2		5229265,5229916,5230733	5229537,5230193,5231530	
chr3	5231579	5238140	5231663	5237442	+	Cre03.g182950.t1.2	Cre03.g182950.t1.2		5231579,5232490,5233126,5233672,5234099,5234728,5235324,5236109,5236358,5236630,5236921,5237252	5232224,5232630,5233356,5233854,5234275,5234832,5235397,5236227,5236485,5236737,5237018,5238140	
chr3	5238143	5240698	5239286	5240563	-	Cre03.g183000.t1.2	Cre03.g183000.t1.2		5240458,5239777,5239596,5238143	5240698,5239860,5239655,5239397	
chr3	5240799	5242570	5240896	5241922	+	MGT1	Cre03.g183050.t1.2		5240799,5241181,5241462,5241828	5240975,5241276,5241516,5242570	Probably localised to the Golgi complex and post-Golgi vesicles
chr3	5242619	5245752	5242670	5245134	+	TIM22B	Cre03.g183100.t1.2		5242619,5243111,5243408,5243795,5244965	5243032,5243231,5243488,5243859,5245752	Similar to mitochondrial import inner membrane translocase TIM22, belongs to theTIM17/TIM22/TIM23 family. Four TIM22-related proteins are present in Arabidopsis, three in Chlamydomonas
chr3	5246019	5251800	5246402	5251349	+	Cre03.g183150.t1.1	Cre03.g183150.t1.1		5246019,5246876,5247227,5247716,5248156,5248479,5248805,5249242,5249634,5250018,5250667,5251049,5251188	5246735,5247058,5247363,5247840,5248191,5248594,5249053,5249455,5249839,5250109,5250792,5251101,5251800	
chr3	5251849	5259291	5252017	5259013	+	CPC1	Cre03.g183200.t1.2		5251849,5252149,5252363,5252702,5252937,5253391,5253858,5254152,5258051,5258451	5252086,5252271,5252497,5252823,5253198,5253723,5253995,5257916,5258331,5259291	Mutations at CPC1 disrupt assembly of a central pair microtubule-associated complex and alter flagellar beat frequency in Chlamydomonas [PMID: 15292403]. Identified in the flagellar and basal body proteome as FBB7 [PMID: 15137946]; upregulated by deflagellation; null-allele mutant was isolated (PMID 29743196)
chr3	5259293	5261369	5259999	5261233	-	Cre03.g183250.t1.2	Cre03.g183250.t1.2		5261217,5260910,5260644,5260386,5260147,5259293	5261369,5261047,5260707,5260449,5260191,5260044	
chr3	5261469	5264082	5261584	5263194	+	Cre03.g183300.t1.1	Cre03.g183300.t1.1		5261469,5261757,5261902,5262240,5262483,5262853,5263131	5261660,5261809,5262003,5262294,5262633,5262967,5264082	
chr3	5261469	5264082	5261584	5263194	+	Cre03.g183300.t2.1	Cre03.g183300.t2.1		5261469,5261757,5261902,5262240,5262570,5262853,5263131	5261660,5261809,5262003,5262294,5262633,5262967,5264082	
chr3	5264329	5272740	5264441	5272440	+	Cre03.g183350.t1.1	Cre03.g183350.t1.1		5264329,5264774,5266142,5266718,5267058,5267248,5267584,5267804,5268059,5268351,5268778,5269271,5269570,5269934,5270295,5270654,5271155,5271582	5264491,5265875,5266540,5266798,5267134,5267340,5267714,5267895,5268249,5268522,5269011,5269393,5269695,5270043,5270461,5270752,5271378,5272740	SNF2-related helicase.  ChromoDB CHR348
chr3	5272810	5275083	5272940	5274776	+	Cre03.g183400.t1.1	Cre03.g183400.t1.1		5272810,5273138,5273439,5273813,5274306,5274633	5273047,5273249,5273528,5273920,5274447,5275083	null-allele mutant was isolated (PMID 29743196)
chr3	5276521	5280918	5277890	5280863	-	Cre03.g183451.t1.1	Cre03.g183451.t1.1		5278271,5278096,5276521	5280918,5278157,5277936	
chr3	5280973	5282698	5281254	5282586	-	Cre03.g183500.t1.2	Cre03.g183500.t1.2		5282440,5282304,5282106,5281938,5281566,5280973	5282698,5282360,5282154,5282007,5281779,5281339	
chr3	5282799	5286320	5282903	5285308	+	Cre03.g183550.t1.1	Cre03.g183550.t1.1		5282799,5283210,5283451,5283747,5283950,5284148,5284327,5284832,5285194	5283141,5283261,5283634,5283833,5284031,5284206,5284658,5284940,5286320	
chr3	5285443	5288398	5285873	5288095	-	Cre03.g183600.t1.1	Cre03.g183600.t1.1		5288207,5287971,5287529,5287022,5286458,5285443	5288398,5288105,5287887,5287169,5286676,5286001	
chr3	5286323	5288398	5286357	5288095	-	Cre03.g183600.t2.1	Cre03.g183600.t2.1		5288207,5287971,5287529,5287022,5286458,5286323	5288398,5288105,5287887,5287169,5286676,5286383	
chr3	5288499	5292890	5288609	5292176	+	GDP4	Cre03.g183650.t1.1		5288499,5288860,5289185,5290079,5290579,5290996	5288700,5288975,5289851,5290362,5290841,5292890	
chr3	5292893	5310418	5293159	5309963	-	GSL3	Cre03.g183700.t1.1		5307824,5307291,5307005,5306600,5306199,5305747,5305444,5305049,5304647,5304199,5303258,5301736,5301406,5301038,5300844,5300012,5299248,5299051,5298771,5298430,5298054,5297308,5297009,5296684,5296369,5295950,5295510,5295166,5294599,5294079,5293560,5292893	5310418,5307689,5307126,5306879,5306467,5305969,5305586,5305265,5304823,5304305,5303896,5302972,5301531,5301208,5300902,5300618,5299769,5299095,5298916,5298585,5298222,5297835,5297137,5296857,5296485,5296192,5295674,5295268,5294914,5294416,5293840,5293396	glycosyl transferase of GT48 family, possibly a 1,3-beta-D-glucan synthase
chr3	5310576	5315168	5311109	5315104	-	OPR16	Cre03.g183750.t1.1		5315048,5314891,5314216,5312790,5310576	5315168,5314957,5314770,5313704,5312654	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr3	5315317	5317698	5315581	5317336	-	Cre03.g183800.t1.1	Cre03.g183800.t1.1		5317456,5317182,5316762,5316252,5315317	5317698,5317347,5316945,5316605,5316101	
chr3	5317759	5320038	5318213	5319847	-	FDX6	Cre03.g183850.t1.2		5319640,5319127,5318812,5317759	5320038,5319393,5318954,5318541	Fe2S2 containing redox protein, predicted chloroplast localization
chr3	5320189	5322539	5320327	5321272	+	Cre03.g183900.t1.2	Cre03.g183900.t1.2		5320189,5320507,5320731,5321129	5320422,5320573,5320833,5322539	
chr3	5322589	5333380	5322701	5333083	+	Cre03.g183950.t1.2	Cre03.g183950.t1.2		5322589,5326961,5330713,5331559	5326320,5330272,5331368,5333380	
chr3	5333453	5338968	5334700	5338667	-	Cre03.g184000.t1.2	Cre03.g184000.t1.2		5338617,5337741,5337156,5336759,5336278,5336121,5335826,5335591,5335204,5333453	5338968,5337807,5337343,5336835,5336457,5336201,5335949,5335699,5335365,5335018	
chr3	5339109	5341120	5339221	5341024	+	Cre03.g184050.t1.1	Cre03.g184050.t1.1		5339109,5339524,5340261,5340522,5340956	5339280,5340075,5340395,5340775,5341120	
chr3	5341123	5343048	5341309	5342723	-	Cre03.g184100.t1.1	Cre03.g184100.t1.1		5342723,5342520,5342117,5341123	5343048,5342606,5342354,5341875	
chr3	5343149	5344990	5343691	5344432	+	Cre03.g184151.t1.1	Cre03.g184151.t1.1		5343149,5343484,5343687,5344055,5344329	5343349,5343571,5343843,5344150,5344990	Related to GCN5
chr3	5345039	5352650	5345794	5351401	+	Cre03.g184200.t1.1	Cre03.g184200.t1.1		5345039,5345246,5345480,5345733,5345930,5349023,5350277,5350809	5345164,5345365,5345621,5345825,5348913,5350110,5350588,5352650	
chr3	5352667	5355715	5353088	5355629	-	CAM9	Cre03.g184250.t1.2		5355437,5355163,5354996,5354833,5354474,5354175,5353650,5353352,5352667	5355715,5355189,5355049,5354900,5354579,5354252,5353703,5353404,5353182	
chr3	5355763	5358748	5356238	5358604	-	Cre03.g184300.t1.1	Cre03.g184300.t1.1		5358202,5355763	5358748,5357930	
chr3	5358879	5364640	5359139	5364230	+	Cre03.g184350.t1.1	Cre03.g184350.t1.1		5358879,5359120,5359351,5360489,5360736,5361585,5361905,5362193,5362458,5362681,5363046,5363358,5363571,5364038	5359021,5359161,5360329,5360602,5361180,5361763,5362060,5362309,5362534,5362877,5363260,5363429,5363871,5364640	
chr3	5365448	5367462	5366237	5367368	-	Cre03.g184400.t1.2	Cre03.g184400.t1.2		5367285,5366953,5366571,5365448	5367462,5367036,5366691,5366369	
chr3	5367591	5372238	5367702	5370604	+	Cre03.g184450.t1.1	Cre03.g184450.t1.1		5367591,5367818,5368112,5368336,5368802,5369095,5369663,5369956	5367731,5367988,5368255,5368480,5368984,5369507,5369795,5372238	
chr3	5373735	5378860	5374633	5378600	-	Cre03.g184500.t1.2	Cre03.g184500.t1.2		5378438,5378184,5377933,5377657,5377387,5376864,5376672,5376404,5376152,5375819,5375508,5375288,5375022,5373735	5378860,5378299,5378053,5377803,5377524,5377246,5376774,5376525,5376290,5376041,5375656,5375386,5375171,5374843	
chr3	5378910	5381440	5379093	5381205	-	CPLD28	Cre03.g184550.t1.2		5381078,5380783,5380590,5380004,5379499,5378910	5381440,5380850,5380660,5380199,5379732,5379309	Conserved expressed protein, chloroplast location predicted in Arabidopsis
chr3	5381541	5386242	5381991	5385376	+	RWP7	Cre03.g184600.t1.1		5381541,5381983,5382648,5384148,5384551	5381732,5382549,5383987,5384391,5386242	putative RWP-RK domain transcription factor [PMID: 15785851]
chr3	5389135	5392380	5390560	5391699	-	RAD51D	Cre03.g184651.t1.1		5392284,5392089,5391843,5391233,5390794,5389135	5392380,5392156,5392015,5391735,5391065,5390611	Homologous to recA and RAD51; most similar to Arabidopsis RAD51D and human TRAD
chr3	5392531	5396612	5392742	5396113	+	Cre03.g184700.t1.2	Cre03.g184700.t1.2		5392531,5392900,5393441,5393882,5394209,5394710,5395043,5395359,5395622,5396004	5392785,5392949,5393539,5393987,5394363,5394825,5395203,5395513,5395857,5396612	
chr3	5392531	5396612	5392943	5396113	+	Cre03.g184700.t2.1	Cre03.g184700.t2.1		5392531,5392900,5393441,5393882,5394209,5394710,5395043,5395359,5395622,5396004	5392785,5392949,5393539,5393987,5394363,5394825,5395203,5395513,5395857,5396612	
chr3	5396615	5398740	5397027	5398608	-	Cre03.g184750.t1.1	Cre03.g184750.t1.1		5398377,5398224,5397506,5397314,5396615	5398740,5398254,5398077,5397361,5397138	
chr3	5398795	5403280	5399115	5403015	-	Cre03.g184800.t1.1	Cre03.g184800.t1.1		5402898,5402671,5402262,5401899,5401591,5401017,5400334,5400085,5398795	5403280,5402701,5402446,5402120,5401753,5401257,5400870,5400181,5399958	
chr3	5403391	5406628	5403604	5406200	+	Cre03.g184850.t1.1	Cre03.g184850.t1.1		5403391,5403915,5404074,5404346,5404580,5404847,5405214,5405623,5405884,5406126	5403661,5403981,5404111,5404426,5404680,5405016,5405402,5405766,5406015,5406628	
chr3	5406781	5414882	5406897	5414571	+	Cre03.g184900.t1.2	Cre03.g184900.t1.2		5406781,5407171,5407585,5408494,5409642,5410589,5410865,5411175,5411597,5411931,5412386,5412663,5413180,5413533	5407014,5407419,5408193,5409486,5410445,5410669,5410969,5411351,5411755,5412218,5412538,5413017,5413238,5414882	
chr3	5414893	5417690	5415416	5417479	-	MAW3	Cre03.g184950.t1.1		5417347,5417165,5414893	5417690,5417271,5416983	Contains predicted C-terminal GPI-anchor signal
chr3	5418079	5429120	5418926	5428199	-	CALS2	Cre03.g185000.t1.1		5428616,5426612,5421092,5420830,5418079	5429120,5428240,5426404,5420946,5420687	1,3-beta-D-glucan synthase and glycosyl transferase of GT48 family
chr3	5430601	5433911	5430816	5433337	+	FAP53	Cre03.g185050.t1.1		5430601,5430920,5431238,5431810,5432121,5432563,5433036	5430828,5430997,5431621,5431904,5432396,5432865,5433911	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr3	5434234	5436930	5434600	5436763	-	Cre03.g185100.t1.1	Cre03.g185100.t1.1		5436556,5436073,5435787,5435374,5435103,5434926,5434234	5436930,5436276,5435972,5435604,5435192,5434949,5434810	
chr3	5437022	5439292	5437192	5438789	+	Cre03.g185150.t1.1	Cre03.g185150.t1.1		5437022,5438034,5438242,5438552	5437869,5438091,5438304,5439292	
chr3	5439431	5444060	5439796	5442863	+	CPL3	Cre03.g185200.t1.2		5439431,5440209,5440756,5441301,5441727,5442126,5442617	5440115,5440364,5440864,5441506,5441829,5442231,5444060	Metallophosphoesterase/metallo-dependent phosphatase.  Plant-lineage conserved protein.  Previously annotated as CPL3
chr3	5444965	5450972	5446636	5450859	-	SSS2	Cre03.g185250.t1.2		5450726,5450556,5450138,5449554,5449164,5448737,5448498,5447938,5447453,5447032,5444965	5450972,5450614,5450437,5449728,5449315,5448871,5448611,5448300,5447712,5447272,5446801	ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase
chr3	5451114	5454840	5451701	5454724	-	Cre03.g185300.t1.2	Cre03.g185300.t1.2		5454702,5454526,5454222,5453814,5453324,5452883,5452541,5452331,5451114	5454840,5454613,5454355,5453962,5453629,5453092,5452713,5452432,5452047	Galactokinase in the galacto- (EC:2.7.1.6), homoserine (EC:2.7.1.39), mevalonate (EC:2.7.1.36) and phosphomevalonate (EC:2.7.4.2) kinase (GHMP family)
chr3	5454991	5465762	5455180	5464803	+	CALS1	Cre03.g185350.t1.1		5454991,5457302,5462763,5463030	5457100,5462617,5462879,5465762	1,3-beta-D-glucan synthase and glycosyl transferase of GT48 family; null-allele mutant was isolated (PMID 29743196)
chr3	5465772	5469180	5466460	5468474	-	MAW2	Cre03.g185400.t1.1		5468298,5465772	5469180,5468171	Contains predicted C-terminal GPI-anchor signal
chr3	5469235	5474520	5469602	5474300	-	Cre03.g185450.t1.1	Cre03.g185450.t1.1		5473982,5473722,5472743,5469235	5474520,5473837,5473570,5472570	
chr3	5475651	5486383	5476018	5485749	+	FAP160	Cre03.g185500.t1.1		5475651,5475993,5476606,5477096,5477900,5478299,5478686,5479164,5479502,5479864,5480122,5480602,5481027,5481270,5481586,5482751,5483046,5483431,5483778,5484133,5485037,5485431	5475807,5476336,5476705,5477232,5478057,5478446,5478907,5479287,5479656,5479941,5480356,5480797,5481108,5481428,5482497,5482881,5483178,5483523,5483944,5484796,5485258,5486383	Inositol hexakisphosphate kinase; predicted to pyrophosphorylate InsP6 at the 1,3 positions, generating 1PP-InsP5 (In1sP7) and possibly 1,3PP-InsP4 (InsP8); involved in Inositol Polyphosphate and TOR signaling; mutant is hypersensitive to rapamycin; also found in the flagellar proteome
chr3	5486878	5489490	5487307	5489468	-	SEBP1	Cre03.g185550.t1.2		5489405,5489162,5488970,5488764,5488236,5487631,5486878	5489490,5489308,5489074,5488874,5488551,5487866,5487487	Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37), chloroplast precursor; 98% identical to Chlamydomonas SBPase cDNA sequence S17P [GenBank CAA52439, PMID: 8165256]
chr3	5489895	5492163	5490670	5491951	-	OGD3	Cre03.g185600.t1.1		5491879,5489895	5492163,5491273	EC 2.3.1.61; 2-oxoglutarate dehydrogenase, E2 component
chr3	5492305	5497918	5492423	5497449	+	FAP251	Cre03.g185650.t1.2		5492305,5492542,5492868,5493506,5494017,5494374,5494682,5495270,5495547,5495885,5496370,5496740,5497243	5492447,5492688,5493098,5493868,5494191,5494510,5495068,5495405,5495726,5496169,5496573,5496985,5497918	Flagellar Associated Protein; found in the flagellar proteome; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation; associated with the CaM- and spoke-Associated CSC complex at the base of the radial spoke
chr3	5497981	5501322	5498324	5501068	+	Cre03.g185700.t1.1	Cre03.g185700.t1.1		5497981,5499612,5500210,5500966	5499370,5499997,5500751,5501322	
chr3	5501325	5504240	5501833	5504161	-	Cre03.g185750.t1.1	Cre03.g185750.t1.1		5504026,5503634,5503293,5502878,5502596,5502259,5501325	5504240,5503709,5503471,5503059,5502673,5502331,5502001	
chr3	5504295	5507880	5505014	5507551	-	Cre03.g185800.t1.2	Cre03.g185800.t1.2		5507413,5507055,5506324,5505987,5505615,5504295	5507880,5507277,5506926,5506056,5505729,5505263	
chr3	5507991	5511687	5508156	5510587	+	CPK2	Cre03.g185850.t1.1		5507991,5508646,5509068,5509348,5510098	5508506,5508712,5509168,5509864,5511687	PfkB-type carbohydrate kinase family protein, ribokinase; strong similarity to proteins in plants and bacteria - cd1168, adenosine_kinase.
chr3	5511741	5514242	5511853	5514027	+	Cre03.g185900.t1.2	Cre03.g185900.t1.2		5511741,5512219,5512554,5512856,5513391	5512017,5512310,5512613,5513118,5514242	
chr3	5511741	5512732	5511853	5512625	+	Cre03.g185900.t2.1	Cre03.g185900.t2.1		5511741,5512219,5512554	5512017,5512310,5512732	
chr3	5514263	5520740	5514782	5520445	-	Cre03.g185950.t1.1	Cre03.g185950.t1.1		5520033,5519723,5519125,5518826,5518133,5517892,5517438,5517105,5516441,5515934,5515515,5515086,5514263	5520740,5519814,5519502,5518890,5518565,5517956,5517741,5517277,5516638,5516270,5515754,5515305,5514835	
chr3	5520881	5524260	5521028	5523987	+	Cre03.g186000.t1.2	Cre03.g186000.t1.2		5520881,5521446,5521679,5522051,5522402,5522657,5523050,5523250,5523471,5523843	5521214,5521532,5521719,5522138,5522439,5522846,5523083,5523306,5523616,5524260	
chr3	5524345	5528600	5525715	5528194	-	Cre03.g186050.t1.1	Cre03.g186050.t1.1		5528100,5527809,5527314,5527041,5526582,5526128,5524345	5528600,5527880,5527371,5527137,5526803,5526389,5525924	
chr3	5528726	5531470	5529605	5531446	-	Cre03.g186100.t1.1	Cre03.g186100.t1.1		5531196,5530916,5530661,5530340,5528726	5531470,5531042,5530806,5530476,5530094	
chr3	5531525	5534010	5532320	5533733	-	Cre03.g186150.t1.1	Cre03.g186150.t1.1		5533688,5533340,5533033,5532666,5531525	5534010,5533423,5533167,5532785,5532476	
chr3	5534121	5539062	5534235	5538486	+	PCT1	Cre03.g186200.t1.2		5534121,5534322,5534481,5534970,5535346,5535878,5536279,5536776,5537188,5537664,5537960,5538418	5534253,5534387,5534600,5535094,5535458,5535980,5536373,5536924,5537434,5537764,5538125,5539062	Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase)
chr3	5539065	5544000	5539392	5543615	-	Cre03.g186250.t1.1	Cre03.g186250.t1.1		5542793,5542256,5541962,5541732,5541465,5541200,5540877,5539935,5539065	5544000,5542584,5542061,5541802,5541540,5541304,5540971,5540693,5539735	
chr3	5544414	5548004	5544662	5547305	+	DII2	Cre03.g186300.t1.2		5544414,5544812,5545183,5545762,5546182,5546610,5546906	5544737,5544874,5545395,5545899,5546325,5546720,5548004	Inner arm dynein p38 (PubMed ID:17981992 Yamamoto et al. Kamiya 2008); HA-tagged (PubMed ID:19382199 Lechtreck et al. Witman 2009)(PubMed ID:21953912 Hom et al. King 2011)
chr3	5548035	5550960	5548264	5550589	-	Cre03.g186350.t1.2	Cre03.g186350.t1.2		5550374,5549358,5548848,5548035	5550960,5550189,5549051,5548684	null-allele mutant was isolated (PMID 29743196)
chr3	5551356	5554607	5552232	5554422	-	SCR1	Cre03.g186400.t1.1		5554305,5553966,5553522,5553295,5552671,5551356	5554607,5554121,5553719,5553303,5553063,5552250	Homologous to metazoan scramblase, which exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury (pfam03803); Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site.
chr3	5551356	5554607	5552232	5554538	-	SCR1	Cre03.g186400.t2.1		5554511,5554305,5553966,5553522,5553295,5552671,5551356	5554607,5554334,5554121,5553719,5553303,5553063,5552250	Homologous to metazoan scramblase, which exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury (pfam03803); Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site.
chr3	5554662	5559597	5555228	5559168	-	LNM1	Cre03.g186450.t1.1		5559017,5558595,5558148,5557620,5557323,5557027,5556489,5556278,5556012,5555400,5554662	5559597,5558881,5558309,5557888,5557452,5557161,5556836,5556358,5556086,5555762,5555279	
chr3	5559747	5564599	5560094	5564021	+	HAT2	Cre03.g186500.t1.1		5559747,5560955,5561392,5561832,5562142,5562411,5563253,5563709	5560706,5561218,5561520,5561996,5562237,5563082,5563513,5564599	ChromDB HAG343
chr3	5564648	5571855	5564718	5571177	+	Cre03.g186550.t1.1	Cre03.g186550.t1.1		5564648,5565294,5565559,5567220,5567893,5568662,5569196,5570030,5570401,5570931	5565172,5565390,5566996,5567640,5568362,5568917,5569623,5570188,5570697,5571855	
chr3	5571922	5575347	5573180	5574667	-	Cre03.g186600.t1.1	Cre03.g186600.t1.1		5574884,5573941,5573495,5571922	5575347,5574726,5573660,5573323	
chr3	5575439	5578088	5575560	5577275	+	Cre03.g186650.t1.2	Cre03.g186650.t1.2		5575439,5575702,5576004,5576201,5576753,5576967,5577180	5575639,5575820,5576048,5576557,5576788,5577000,5578088	
chr3	5578258	5582145	5578494	5582115	+	Cre03.g186700.t1.1	Cre03.g186700.t1.1		5578258,5578640,5579150,5580034,5581599	5578521,5578877,5579868,5581437,5582145	
chr3	5582172	5592827	5582855	5592715	-	Cre03.g186750.t1.2	Cre03.g186750.t1.2		5592699,5592251,5591327,5590997,5590652,5590281,5589929,5589593,5589148,5588470,5588210,5587742,5587462,5586972,5586661,5586250,5582172	5592827,5592452,5591612,5591197,5590873,5590470,5590083,5589715,5589321,5588905,5588296,5588010,5587593,5587280,5586810,5586411,5586062	
chr3	5592698	5598359	5592839	5597985	+	Cre03.g186800.t1.2	Cre03.g186800.t1.2		5592698	5598359	
chr3	5592948	5598359	5593031	5597985	+	Cre03.g186800.t2.1	Cre03.g186800.t2.1		5592948	5598359	
chr3	5598402	5608117	5598522	5607878	-	Cre03.g186850.t1.1	Cre03.g186850.t1.1		5607704,5607175,5606842,5604413,5603783,5603532,5603129,5602301,5601401,5601103,5600552,5599972,5599255,5598724,5598402	5608117,5607562,5606951,5606641,5604248,5603644,5603294,5602985,5602175,5601271,5600908,5600297,5599752,5599108,5598596	
chr3	5608238	5609336	5608370	5608652	+	Cre03.g186900.t1.1	Cre03.g186900.t1.1		5608238,5608530	5608449,5609336	
chr3	5609342	5612987	5609715	5612827	-	Cre03.g186950.t1.2	Cre03.g186950.t1.2		5612629,5612241,5611954,5611457,5611049,5610751,5610453,5610068,5609342	5612987,5612432,5612046,5611605,5611246,5610842,5610535,5610241,5609868	
chr3	5613194	5620307	5613861	5620115	-	Cre03.g187000.t1.1	Cre03.g187000.t1.1		5620000,5619841,5618587,5618278,5617902,5617630,5617340,5616777,5616407,5616012,5615523,5615030,5614559,5613194	5620307,5619884,5619747,5618379,5618094,5617706,5617504,5617022,5616598,5616169,5615654,5615338,5614689,5614313	
chr3	5620428	5624439	5620456	5623767	+	PHT3	Cre03.g187050.t1.2		5620428,5620767,5621244,5621715,5622054,5623030,5623419	5620602,5621022,5621453,5621826,5622691,5623176,5624439	
chr3	5624442	5628057	5624523	5627133	-	Cre03.g187100.t1.1	Cre03.g187100.t1.1		5627629,5626027,5625711,5625186,5624442	5628057,5627157,5625812,5625594,5624919	
chr3	5628838	5631979	5629496	5631954	+	Cre03.g187150.t1.1	Cre03.g187150.t1.1		5628838,5629407,5630362,5631185,5631642,5631927	5629299,5629748,5630825,5631394,5631822,5631979	
chr3	5631982	5634187	5633354	5633971	-	DLL2	Cre03.g187200.t1.2		5633715,5633544,5631982	5634187,5633584,5633420	LC6 component of outer arm dynein; LC8 homolog.
chr3	5634288	5636330	5634323	5635843	+	Cre03.g187250.t1.2	Cre03.g187250.t1.2		5634288,5634655,5634893,5635094,5635347,5635741	5634434,5634741,5634931,5635141,5635448,5636330	
chr3	5636352	5641857	5637992	5641652	-	Cre03.g187300.t1.1	Cre03.g187300.t1.1		5641487,5640969,5639014,5636352	5641857,5641298,5640639,5638883	
chr3	5641904	5646757	5642320	5645633	-	UNI3	Cre03.g187350.t1.1		5645974,5645621,5645265,5644892,5644530,5644146,5643723,5643354,5643009,5642723,5641904	5646757,5645785,5645383,5644940,5644669,5644302,5643973,5643613,5643149,5642856,5642482	Delta tubulin (TUD)[gi:7441381]. Required for assembly of the basal body/centriole and localizes to the basal body
chr3	5646858	5660045	5646978	5659584	+	Cre03.g187400.t1.2	Cre03.g187400.t1.2		5646858,5647550,5650399,5650708,5651031,5651363,5651593,5651887,5653052,5653299,5655526,5655899,5657187,5657612,5658057,5658619,5659005,5659383	5647263,5650203,5650528,5650828,5651247,5651457,5651705,5652918,5653137,5655323,5655684,5656386,5657338,5657797,5658185,5658749,5659110,5660045	null-allele mutant was isolated (PMID 29743196)
chr3	5660281	5661787	5660898	5661709	-	RPI1	Cre03.g187450.t1.2		5660281	5661787	Ribose-5-phosphate isomerase (EC 5.3.1.6), pentose phosphate isomerase; likely plastid precursor based on putative organelle-targeting N-terminal sequence and similarity to spinach plastid ribose phosphate isomerase (GenBank AAL77589)
chr3	5662818	5667040	5663209	5665273	+	Cre03.g187500.t1.2	Cre03.g187500.t1.2		5662818,5663592,5663958,5664300,5664615,5664861,5665117	5663354,5663695,5664008,5664372,5664711,5664948,5667040	
chr3	5667268	5673769	5667399	5673191	+	Cre03.g187550.t1.1	Cre03.g187550.t1.1		5667268,5667491,5667909,5668527,5668823,5669336,5669837,5670655,5671270,5671950,5672822	5667402,5667641,5668000,5668598,5668945,5669445,5670080,5671060,5671742,5672498,5673769	
chr3	5673771	5676037	5674072	5675973	-	Cre03.g187600.t1.2	Cre03.g187600.t1.2		5675783,5675468,5675116,5674759,5673771	5676037,5675530,5675288,5674851,5674426	
chr3	5676647	5680007	5677108	5679902	-	Cre03.g187650.t1.1	Cre03.g187650.t1.1		5679438,5678782,5678175,5676647	5680007,5678952,5678491,5677881	
chr3	5680158	5694679	5680255	5694380	+	HEL19	Cre03.g187700.t1.1		5680158,5680465,5680677,5683273,5684327,5684593,5684956,5686226,5686891,5687363,5687864,5690097,5690437,5690860,5691311,5692679,5693095,5693846	5680393,5680527,5682917,5684162,5684439,5684662,5685754,5686687,5687091,5687506,5689747,5690225,5690570,5691028,5692189,5692812,5693323,5694679	ATP-dependent DEAD/DEAH box DNA helicase
chr3	5694728	5696439	5694791	5695491	+	Cre03.g187750.t1.2	Cre03.g187750.t1.2		5694728	5696439	
chr3	5696568	5698209	5696782	5697581	+	Cre03.g187800.t1.2	Cre03.g187800.t1.2		5696568	5698209	
chr3	5699018	5700512	5699291	5700093	+	Cre03.g187850.t1.2	Cre03.g187850.t1.2		5699018	5700512	
chr3	5705662	5715177	5706039	5715043	-	Cre03.g187950.t1.1	Cre03.g187950.t1.1		5714899,5714537,5713983,5713573,5712961,5712003,5711455,5711133,5710509,5710148,5709126,5707996,5707578,5705662	5715177,5714676,5714247,5713764,5713293,5712296,5711778,5711221,5710752,5710235,5709313,5708163,5707797,5707196	Putative splicing endonuclease positive effector, related to SEN1
chr3	5715318	5718774	5715789	5718714	+	Cre03.g187976.t1.1	Cre03.g187976.t1.1		5715318,5716134,5716778,5717168,5717584,5717928,5718426,5718693	5715891,5716456,5716955,5717255,5717630,5718084,5718520,5718774	
chr3	5721526	5727383	5721583	5726328	+	Cre03.g188001.t1.1	Cre03.g188001.t1.1		5721526,5721741,5722584,5722987,5723884,5724376,5724778,5725223,5726166	5721605,5722136,5722747,5723343,5724036,5724531,5724898,5725473,5727383	
chr3	5727390	5728525	5727821	5728278	-	Cre03.g188026.t1.1	Cre03.g188026.t1.1		5727390	5728525	
chr3	5729007	5730255	5729373	5730224	-	Cre03.g188050.t1.2	Cre03.g188050.t1.2		5730162,5729007	5730255,5729911	
chr3	5730310	5737375	5730952	5737189	-	Cre03.g188100.t1.2	Cre03.g188100.t1.2		5737039,5736796,5735765,5735126,5734775,5732599,5731814,5730310	5737375,5736949,5736429,5735591,5734911,5734569,5732351,5731617	
chr3	5737481	5741695	5737780	5741396	+	RPH2	Cre03.g188200.t1.2		5737481,5739375,5739695,5740384,5740798,5741243	5737876,5739467,5740030,5740497,5740869,5741695	Homologue of S. cerevisiae Rrp42, which is a core component of the exosome, a complex of multiple 3'-5' exoribonucleases involved in RNA processing and RNA degradation. Homologue of RNase PH.
chr3	5741796	5746698	5741898	5745472	+	STA6	Cre03.g188250.t1.2		5741796,5742038,5742168,5742357,5742976,5743748,5744778	5741965,5742096,5742281,5742566,5743147,5743976,5746698	ADP-glucose pyrophosphorylase large subunit 4; Glucose-1-phosphate adenylyltransferase / ADP-glucose synthase; regulatory subunit catalyzes the formation of the glucosyl nucleotide from ATP and glucose-1-phosphate; contains nucleotidyl transferase domain; involved in starch metabolism
chr3	5747176	5751750	5747865	5751247	+	RBO1	Cre03.g188300.t1.1		5747176,5747713,5747862,5748263,5748648,5748932,5749257,5749490,5749859,5750283,5750798,5751144	5747565,5747745,5748037,5748487,5748733,5749055,5749346,5749641,5750103,5750601,5750949,5751750	putative NADPH oxidase homolog, related to plant respiratory burst oxidase; respiratory burst oxidase; Ferric reductase like transmembrane component; possible NADPH oxidase activity; possible Cytochrome b-245 heavy chain
chr3	5752166	5753337	5752196	5752690	+	Cre03.g188350.t1.2	Cre03.g188350.t1.2		5752166,5752690	5752455,5753337	
chr3	5753406	5758534	5753803	5757399	+	RBO2	Cre03.g188400.t1.1		5753406,5754179,5754466,5754861,5755127,5755483,5755778,5756224,5756675,5756911,5757299	5753985,5754354,5754690,5754946,5755340,5755634,5756022,5756455,5756770,5757065,5758534	putative NADPH oxidase homolog, related to plant respiratory burst oxidase; ferric reductase like transmembrane component; possible NADPH oxidase activity; possible cytochrome b-245 heavy chain
chr3	5758553	5761324	5758976	5761124	-	PTX2	Cre03.g188450.t1.2		5761043,5760818,5760483,5759865,5759310,5758553	5761324,5760933,5760600,5759949,5759434,5759150	Identified by Pazour et al. 1995 [PMID:  7593169] as the locus for an insertional mutant, ptx2, with impaired phototaxis; the mutant shows a normal light-induced photoreceptor current but lacks the flagellar current; similar to echinacaean XP_800286 and D. rerio XP_706476
chr3	5761416	5764207	5761887	5763455	+	VPS46	Cre03.g188500.t1.2		5761416,5761806,5762230,5762624,5763064,5763326	5761656,5761998,5762385,5762713,5763177,5764207	Expressed Protein. Similar to yeast Did2p/Vps46p, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes)
chr3	5764210	5770285	5764316	5770179	-	HEL20	Cre03.g188550.t1.1		5769764,5769197,5768218,5767698,5767372,5766419,5765969,5765546,5764844,5764210	5770285,5769384,5768685,5767875,5767465,5766956,5766142,5765649,5765246,5764496	
chr3	5770466	5773577	5770565	5773511	+	RBL11	Cre03.g188600.t1.2		5770466,5771527,5771934,5772158,5772946,5773331	5771322,5771778,5771967,5772670,5773129,5773577	Similar to rhomboid intramembrane proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579).  Contains peroxidase active site
chr3	5773593	5776660	5774755	5776528	-	PLAP2	Cre03.g188650.t1.2		5776305,5775750,5775482,5775227,5773593	5776660,5775935,5775534,5775332,5774868	PAP-fibrillin family protein
chr3	5776710	5779326	5777305	5779212	-	PLAP6	Cre03.g188700.t1.2		5778987,5778616,5778204,5777700,5776710	5779326,5778747,5778290,5777822,5777479	PAP-fibrillin family protein
chr3	5779666	5786107	5779899	5785683	+	HEL21	Cre03.g188750.t1.1		5779666,5780214,5780528,5780927,5781143,5781345,5781730,5782241,5782444,5782620,5782919,5783254,5783515,5783855,5784268,5784747,5785165,5785578	5779967,5780307,5780809,5781003,5781211,5781471,5782068,5782333,5782475,5782701,5783047,5783304,5783651,5784019,5784424,5784907,5785324,5786107	
chr3	5786156	5791765	5786321	5790383	+	Cre03.g188800.t1.1	Cre03.g188800.t1.1		5786156,5786598,5786824,5787053,5787423,5788482,5788854,5789334,5789695,5790114	5786525,5786737,5786900,5787123,5787713,5788643,5788958,5789459,5789881,5791765	NAPRTase (EC:2.4.2.11) is the rate limiting enzyme that catalyses the first reaction in  the NAD salvage synthesis
chr3	5791770	5795375	5792606	5795214	-	Cre03.g188850.t1.2	Cre03.g188850.t1.2		5795158,5794850,5794014,5793590,5793317,5791770	5795375,5794922,5794648,5793728,5793401,5793088	
chr3	5795480	5797330	5796455	5797133	-	Cre03.g188900.t1.2	Cre03.g188900.t1.2		5796891,5795480	5797330,5796537	
chr3	5797474	5800973	5797630	5800578	+	Cre03.g188950.t1.2	Cre03.g188950.t1.2		5797474,5797951,5798285,5798546,5798855,5799196,5799706,5800146,5800429	5797713,5798131,5798410,5798658,5798980,5799379,5799891,5800251,5800973	
chr3	5800980	5808595	5801309	5807867	-	RAD54A	Cre03.g189000.t1.1		5807351,5807152,5806938,5806457,5806152,5805992,5805782,5805548,5805310,5805015,5804749,5804471,5804208,5803917,5803705,5803379,5803134,5802817,5802637,5802414,5802001,5800980	5808595,5807226,5807062,5806771,5806273,5806047,5805883,5805633,5805384,5805127,5804884,5804585,5804318,5803970,5803780,5803502,5803211,5802903,5802684,5802477,5802210,5801846	ChromDB CHR3416, a SWI2/SNF2-like protein in the RAD54/ATRX subclass; the yeast homologue RAD54 facilitates strand invasion by the RAD51 nucleoprotein filament
chr3	5808756	5813837	5808787	5813561	+	EAM1	Cre03.g189050.t1.1		5808756,5809991,5810277,5810642,5810966,5811177,5811384,5811888,5812111,5812440,5812835,5813237	5808942,5810082,5810407,5810722,5811032,5811260,5811494,5811947,5812192,5812553,5812922,5813837	Glycoprotein endo-alpha-1,2-mannosidase, GH99 family, involved in N-glycosylation
chr3	5813840	5817123	5814487	5816997	-	Cre03.g189100.t1.2	Cre03.g189100.t1.2		5816789,5816456,5815290,5814944,5813840	5817123,5816539,5815426,5815038,5814686	
chr3	5817246	5833767	5817350	5833653	+	Cre03.g189150.t1.1	Cre03.g189150.t1.1		5817246,5817887,5818223,5819503,5820064,5821502,5823218,5823694,5823976,5824622,5825433,5826053,5827874,5832357,5832727,5833040	5817623,5818011,5819377,5819822,5821274,5823034,5823348,5823845,5824298,5825059,5825912,5827726,5832197,5832615,5832873,5833767	null-allele mutant was isolated (PMID 29743196)
chr3	5833816	5835757	5833845	5835063	+	Cre03.g189200.t1.2	Cre03.g189200.t1.2		5833816,5833992,5834303,5834632,5834946	5833900,5834146,5834389,5834724,5835757	
chr3	5835806	5838049	5835906	5837574	+	RAB11	Cre03.g189250.t1.2		5835806,5836050,5836262,5836464,5836997,5837213,5837493	5835929,5836191,5836388,5836537,5837071,5837341,5838049	Expressed Protein. Similar to the RabA/Rab11 type GTPase, involved in vesicle trafficking in the Golgi Endosomal system. Identical to YPTC6 [gi 3025293 sp Q39572 YPT6_CHLRE].
chr3	5838209	5841447	5838655	5841350	-	PLAP10	Cre03.g189300.t1.1		5841309,5841174,5841066,5840857,5840610,5840145,5839878,5839552,5839229,5838976,5838209	5841447,5841213,5841107,5840985,5840690,5840306,5839925,5839613,5839364,5839074,5838760	PAP-fibrillin family protein
chr3	5841635	5843855	5841906	5843707	-	Cre03.g189350.t1.2	Cre03.g189350.t1.2		5843684,5843304,5842959,5842695,5842509,5842297,5841635	5843855,5843427,5842986,5842750,5842538,5842322,5842030	
chr3	5844210	5849925	5845068	5849895	-	TSS2	Cre03.g189400.t1.2		5849867,5849590,5849428,5849005,5848604,5847396,5846830,5846396,5845929,5845408,5844210	5849925,5849694,5849498,5849166,5848735,5847588,5846998,5846504,5846075,5845632,5845146	transfers seryl moiety to tRNA-Ser and to tRNA-Sec (for selenocysteine synthesis)
chr3	5850026	5852737	5850266	5852128	+	Cre03.g189450.t1.2	Cre03.g189450.t1.2		5850026,5850796,5851059,5851372,5851736,5852024	5850283,5850901,5851175,5851473,5851859,5852737	
chr3	5852786	5855049	5852879	5854609	+	Cre03.g189500.t1.2	Cre03.g189500.t1.2		5852786,5853281,5853506,5853854,5854219,5854538	5853016,5853386,5853622,5853955,5854342,5855049	null-allele mutant was isolated (PMID 29743196)
chr3	5855096	5857267	5855135	5856852	+	ZIP3	Cre03.g189550.t1.1		5855096,5855443,5855911,5856257,5856654	5855165,5855741,5856100,5856472,5857267	related to plant homologs; PMID: 15710683; PMID: 16766055
chr3	5857776	5859477	5858080	5859317	+	Cre03.g189600.t1.1	Cre03.g189600.t1.1		5857776,5858052,5858966	5857979,5858743,5859477	
chr3	5859526	5871337	5859602	5870784	+	Cre03.g189605.t1.2	Cre03.g189605.t1.2		5859526,5860423,5860685,5861073,5861546,5861999,5862348,5862724,5863094,5863458,5864191,5864474,5865010,5865312,5865565,5866006,5866449,5866906,5867717,5868199,5868531,5868957,5869347,5869789,5870069,5870499	5860043,5860559,5860801,5861157,5861665,5862142,5862488,5862913,5863173,5863710,5864263,5864681,5865108,5865404,5865722,5866096,5866559,5866965,5867848,5868291,5868638,5869138,5869492,5869904,5870263,5871337	
chr3	5871341	5879475	5872126	5879144	-	Cre03.g189650.t1.1	Cre03.g189650.t1.1		5879034,5878853,5878249,5878142,5877830,5877513,5877198,5876777,5876314,5876064,5875712,5875388,5875122,5874532,5874029,5873613,5873184,5872793,5872378,5871341	5879475,5878961,5878782,5878184,5878066,5877716,5877433,5877055,5876601,5876195,5875921,5875564,5875241,5874960,5874251,5873877,5873475,5873032,5872667,5872244	ChromDB HAC341; Homologous to CREB-binding protein, a co-activator of transcription with histone acetyltransferase activity
chr3	5879552	5883008	5880369	5882865	-	Cre03.g189700.t1.2	Cre03.g189700.t1.2		5882772,5882646,5882278,5882103,5881843,5881446,5881233,5880988,5880637,5879552	5883008,5882692,5882418,5882148,5881982,5881572,5881260,5881081,5880797,5880440	
chr3	5883740	5889375	5884581	5889347	-	CYN38	Cre03.g189800.t1.2		5889233,5889065,5888876,5888728,5888558,5888015,5887012,5886473,5886177,5885305,5884788,5883740	5889375,5889142,5888989,5888796,5888632,5888212,5887259,5886635,5886293,5885877,5884901,5884581	
chr3	5889506	5893743	5889608	5893635	+	Cre03.g189850.t1.2	Cre03.g189850.t1.2		5889506,5889965,5890316,5890538,5890847,5891277,5891667,5892066,5892450,5893526	5889840,5890073,5890398,5890664,5891024,5891423,5891918,5892183,5893302,5893743	
chr3	5893750	5894545	5893795	5894420	-	Cre03.g189901.t1.1	Cre03.g189901.t1.1		5894142,5893750	5894545,5893889	
chr3	5894666	5899853	5894779	5899174	+	HOP	Cre03.g189950.t1.2		5894666,5894929,5895246,5895563,5895930,5896474,5896754,5897224,5897488,5897909,5898267,5898679,5899060	5894800,5895048,5895290,5895665,5896171,5896548,5897032,5897351,5897677,5898034,5898451,5898784,5899853	HOP (or Sti1 in yeast) is a cytosolic protein that mediates the interaction between HSP90 and HSP70 via TPR domains; these bind to the EEVD motifs present in cytosolic HSP90 and HSP70 [PMID: 8423808]
chr3	5899857	5905725	5901271	5905428	-	Cre03.g190000.t1.2	Cre03.g190000.t1.2		5905302,5905076,5904716,5904270,5903208,5899857	5905725,5905213,5904784,5904457,5903391,5902939	
chr3	5906644	5919606	5907202	5919391	-	Cre03.g190050.t1.1	Cre03.g190050.t1.1		5919355,5919196,5918934,5918511,5918165,5917836,5917393,5915474,5908750,5907633,5906644	5919606,5919257,5919009,5918664,5918238,5918057,5917554,5917225,5915319,5908568,5907502	
chr3	5919747	5925249	5919778	5924747	+	EIF3B	Cre03.g190100.t1.1		5919747,5920062,5920289,5920475,5921746,5922273,5923035,5923355,5923811,5924100,5924395	5919977,5920157,5920365,5920630,5921940,5922665,5923170,5923642,5923917,5924257,5925249	putative Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) (p82)
chr3	5925297	5928297	5925377	5927524	+	CGL1	Cre03.g190150.t1.1		5925297,5926034,5926292,5926721,5927076,5927446	5925611,5926171,5926447,5926832,5927173,5928297	
chr3	5928841	5933449	5929213	5932126	+	Cre03.g190200.t1.2	Cre03.g190200.t1.2		5928841,5929539,5929811,5930063,5930420,5930686,5931489	5929245,5929644,5929869,5930132,5930446,5930921,5933449	
chr3	5933677	5943525	5934245	5942213	+	SUB6	Cre03.g190250.t1.2		5933677,5934646,5935330,5935635,5935923,5936150,5936410,5936851,5937100,5937430,5937720,5937957,5938208,5938390,5938699,5939095,5939375,5939636,5939817,5940182,5940549,5940770,5941463	5934443,5935152,5935441,5935766,5936027,5936259,5936514,5936929,5937162,5937602,5937782,5938094,5938258,5938461,5938894,5939191,5939450,5939668,5940061,5940228,5940656,5940999,5943525	
chr3	5945188	5948976	5945975	5948597	-	Cre03.g190281.t1.1	Cre03.g190281.t1.1		5948413,5948231,5946307,5945188	5948976,5948272,5946614,5946026	
chr3	5953213	5957426	5954263	5954818	-	Cre03.g190311.t3.1	Cre03.g190311.t3.1		5957295,5957095,5956349,5954607,5953213	5957426,5957145,5956369,5954848,5954457	
chr3	5950983	5957426	5953667	5954818	-	Cre03.g190311.t1.1	Cre03.g190311.t1.1		5957295,5957095,5956349,5954607,5954407,5950983	5957426,5957145,5956369,5954848,5954457,5953681	
chr3	5950983	5957426	5953667	5954818	-	Cre03.g190311.t2.1	Cre03.g190311.t2.1		5957295,5957095,5956349,5954607,5954407,5950983	5957426,5957145,5956369,5954912,5954457,5953681	
chr3	5960805	5964529	5961003	5963742	+	Cre03.g190400.t1.1	Cre03.g190400.t1.1		5960805,5961445,5963103,5963691	5961181,5961486,5963410,5964529	
chr3	5966195	5970396	5967129	5970324	-	Cre03.g190450.t1.1	Cre03.g190450.t1.1		5969907,5968623,5966195	5970396,5969703,5968478	
chr3	5970454	5978147	5970976	5977968	-	GLC2A	Cre03.g190500.t1.2		5977443,5976834,5976262,5975815,5975263,5974814,5974337,5973799,5973457,5973063,5972375,5972004,5971492,5970454	5978147,5976996,5976400,5976004,5975378,5975002,5974496,5973918,5973511,5973228,5972601,5972173,5971694,5971277	belongs to GH31 family; gate-keeper for glycoprotein release to Golgi
chr3	5978667	5989825	5978832	5987277	+	Cre03.g190550.t1.2	Cre03.g190550.t1.2		5978667,5979135,5979666,5980231,5980668,5981750,5982376,5983145,5983690,5984149,5986632	5978975,5979219,5979837,5980361,5981468,5982001,5982918,5983380,5983909,5986401,5989825	
chr3	5989851	5996406	5991492	5996252	-	Cre03.g190650.t1.1	Cre03.g190650.t1.1		5995628,5995066,5993444,5992865,5992423,5989851	5996406,5995446,5994913,5993317,5992632,5992182	
chr3	5996453	6002046	5996833	6001962	-	Cre03.g190700.t1.2	Cre03.g190700.t1.2		6001314,6000630,5999023,5998582,5998324,5997797,5996453	6002046,6001049,6000447,5998865,5998459,5998147,5997562	
chr3	6002133	6004085	6002626	6004075	-	Cre03.g190750.t1.1	Cre03.g190750.t1.1		6003841,6003569,6003246,6002949,6002133	6004085,6003705,6003375,6003062,6002821	
chr3	6004136	6006367	6004446	6006166	-	TMPK	Cre03.g190800.t1.1		6006055,6005825,6005569,6005055,6004720,6004136	6006367,6005961,6005698,6005252,6004835,6004555	ts-lethal mutations block in S/M (PMID 25336509)
chr3	6006513	6008742	6007500	6008350	+	ECH1	Cre03.g190850.t1.2		6006513,6007445	6006590,6008742	enoylCoA hydratase/isomerase; most similar to animal isoforms, probably mitochondrial. Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr3	6009198	6017275	6010413	6016715	-	Cre03.g190900.t1.1	Cre03.g190900.t1.1		6016471,6016077,6015718,6015393,6014870,6014729,6014553,6014255,6013944,6013617,6013354,6013094,6012800,6012549,6012201,6011971,6011688,6009198	6017275,6016289,6015869,6015577,6015197,6014765,6014581,6014401,6014105,6013751,6013447,6013183,6012900,6012649,6012303,6012035,6011823,6011490	
chr3	6017519	6019856	6017643	6019437	+	TUA1	Cre03.g190950.t1.2		6017519,6017929,6018349	6017688,6018151,6019856	
chr3	6024476	6026527	6024821	6025837	+	RAN1	Cre03.g191050.t1.2		6024476,6025285,6025825	6025202,6025563,6026527	Expressed Protein. Ran-type GTPase, involved in nucleo-cytoplasmic trafficking; found in the flagellar proteome [PMID: 15998802]
chr3	6026547	6029265	6026715	6029092	-	Cre03.g191100.t1.2	Cre03.g191100.t1.2		6027857,6026547	6029265,6027700	
chr3	6029376	6033057	6029643	6032574	+	Cre03.g191150.t1.2	Cre03.g191150.t1.2		6029376,6030668,6031204,6031766,6032149,6032462	6030339,6030875,6031383,6031956,6032333,6033057	
chr3	6033566	6043397	6033806	6043133	+	RME3	Cre03.g191200.t1.2		6033566,6034320,6034635,6035093,6035588,6036007,6036815,6037823,6038334,6039224,6039713,6040300,6040742,6040939,6041281,6041652,6042232	6033857,6034436,6034826,6035367,6035847,6036669,6037598,6037997,6038418,6039540,6040176,6040534,6040793,6041123,6041480,6041990,6043397	Homolog of RNA methyltransferase HEN1 (HUA Enhancer 1) of Arabidopsis.  HEN1 methylates miRNAs and siRNAs on the ribose (2?-O position) of the last nucleotide.  Methylation of the 3?-end likely protects these small RNAs from 3?-end uridylation.  The mouse
chr3	6044306	6047450	6044779	6046012	+	LCI34	Cre03.g191250.t1.2		6044306,6045265	6045085,6047450	Low-CO2 inducible gene revealed by cDNA array analyses; probably organelle-targetted; regulated by CCM1 [PMID: 15235119]
chr3	6048076	6050818	6048468	6049722	+	LCI35	Cre03.g191300.t1.2		6048076,6048449,6048903	6048315,6048756,6050818	Low-CO2 inducible gene revealed by cDNA array analyses; probably organelle-targetted; regulated by CCM1 [PMID: 15235119]
chr3	6050820	6068125	6050954	6067878	-	Cre03.g191350.t1.1	Cre03.g191350.t1.1		6067824,6066654,6066331,6066125,6065838,6065215,6065023,6064559,6064049,6063760,6063394,6062969,6062530,6062285,6062007,6061718,6058424,6058106,6056867,6056484,6055561,6055262,6054592,6054111,6053675,6052841,6052583,6052333,6050820	6068125,6067669,6066396,6066218,6065921,6065622,6065088,6064870,6064406,6063816,6063599,6063227,6062813,6062425,6062132,6061891,6061513,6058177,6057918,6056598,6056281,6055352,6054799,6054266,6053780,6053466,6052673,6052460,6052130	
chr3	6068636	6072627	6069062	6071899	+	Cre03.g191400.t1.2	Cre03.g191400.t1.2		6068636,6069349,6070057,6070642,6070826,6071261,6071675	6069138,6069670,6070240,6070684,6070952,6071415,6072627	
chr3	6073600	6076645	6074214	6076446	-	Cre03.g191450.t1.2	Cre03.g191450.t1.2		6075294,6074840,6073600	6076645,6074995,6074601	
chr3	6076708	6084445	6077119	6084243	-	Cre03.g191500.t1.1	Cre03.g191500.t1.1		6084187,6083672,6083194,6082859,6082534,6082176,6081922,6081442,6080546,6080294,6080121,6079930,6079706,6079484,6078954,6078651,6077734,6076708	6084445,6083813,6083323,6082937,6082602,6082244,6081999,6081544,6080646,6080384,6080153,6079958,6079802,6079525,6079097,6078734,6077970,6077518	
chr3	6084926	6091867	6085279	6090590	+	Cre03.g191550.t1.2	Cre03.g191550.t1.2		6084926,6086214,6086429,6087018,6088611,6089169,6089542,6089987	6085918,6086315,6086764,6088352,6088882,6089298,6089808,6091867	
chr3	6091916	6097854	6092057	6097501	+	Cre03.g191600.t1.1	Cre03.g191600.t1.1		6091916,6093065,6093634,6095391,6095959,6096237,6096727	6092699,6093442,6095082,6095665,6096085,6096545,6097854	null-allele mutant was isolated (PMID 29743196)
chr3	6097906	6104294	6097969	6104048	+	Cre03.g191650.t1.1	Cre03.g191650.t1.1		6097906,6098113,6098994,6099707,6101485,6101963,6102503,6103088	6098017,6098550,6099389,6101128,6101819,6102098,6102829,6104294	null-allele mutant was isolated (PMID 29743196)
chr3	6104346	6110317	6104479	6110025	+	Cre03.g191700.t1.1	Cre03.g191700.t1.1		6104346,6105471,6107665,6108270,6108708,6109203	6105133,6107426,6107960,6108438,6108920,6110317	null-allele mutant was isolated (PMID 29743196)
chr3	6110366	6115327	6110581	6115064	+	Cre03.g191750.t1.2	Cre03.g191750.t1.2		6110366,6111388,6111943,6113022,6113860,6114218,6114743	6111241,6111753,6112818,6113566,6113983,6114442,6115327	
chr3	6118336	6122949	6118683	6122567	+	Cre03.g191776.t1.1	Cre03.g191776.t1.1		6118336,6119116,6119674,6119933	6118971,6119337,6119778,6122949	
chr3	6122990	6128010	6125839	6127890	-	Cre03.g191800.t1.2	Cre03.g191800.t1.2		6127770,6127600,6127289,6126707,6126326,6122990	6128010,6127654,6127364,6127018,6126506,6125944	
chr3	6128166	6131246	6128353	6130823	+	Cre03.g191850.t1.1	Cre03.g191850.t1.1		6128166,6128571,6128734,6129089,6129575,6129824,6130095,6130345,6130673	6128473,6128599,6128857,6129202,6129666,6129878,6130148,6130401,6131246	
chr3	6131816	6149745	6132493	6149544	-	Cre03.g191900.t1.2	Cre03.g191900.t1.2		6149329,6148733,6148505,6148224,6147819,6147231,6146881,6146601,6146139,6145708,6145060,6144602,6144236,6144007,6143512,6143136,6142690,6142171,6141574,6141290,6139980,6139417,6138931,6138652,6138132,6137660,6137093,6136589,6136216,6135681,6134167,6131816	6149745,6149243,6148570,6148292,6147980,6147473,6146964,6146684,6146396,6145953,6145536,6144808,6144356,6144089,6143799,6143331,6142865,6142440,6141958,6141426,6141127,6139741,6139071,6138755,6138350,6137855,6137233,6136771,6136376,6135942,6135504,6133942	
chr3	6150060	6153135	6150375	6153024	-	CGLD31	Cre03.g191950.t1.2		6152715,6152368,6152032,6151731,6151291,6150890,6150060	6153135,6152477,6152104,6151820,6151520,6151010,6150663	Conserved in the Green Lineage and Diatoms
chr3	6153246	6156167	6153495	6155780	+	SEC13L	Cre03.g192000.t1.2		6153246,6153618,6153951,6154308,6154576,6154842,6155151,6155567	6153510,6153734,6154103,6154414,6154705,6154973,6155300,6156167	Hypothetical Conserved Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec13/31 sub-complex; also found associated with nuclear pore in other organisms.
chr3	6157033	6160982	6158010	6160721	-	FTR1	Cre03.g192050.t1.1		6160588,6160101,6159385,6159057,6158697,6158399,6157033	6160982,6160336,6159936,6159200,6158900,6158526,6158239	Iron transporter Ftr1, Ftr1p, Plasma membrane iron permease [PMID: 12455693]
chr3	6162861	6165942	6163290	6165761	+	Cre03.g192100.t1.1	Cre03.g192100.t1.1		6162861,6163922,6164316,6164629,6165121,6165468	6163780,6164076,6164444,6164829,6165241,6165942	
chr3	6165991	6167498	6166024	6167282	+	Cre03.g192150.t1.2	Cre03.g192150.t1.2		6165991,6166737,6167159	6166385,6166813,6167498	
chr3	6167505	6172700	6168617	6172410	-	PHC51	Cre03.g192201.t1.1		6172379,6172182,6171547,6169520,6169118,6167505	6172700,6172218,6171711,6171096,6169260,6168767	
chr3	6172881	6185562	6173192	6184440	+	PHC69	Cre03.g192250.t1.1		6172881,6173522,6174126,6177750,6181708,6184162	6173259,6173564,6177549,6181538,6183997,6185562	
chr3	6185960	6199210	6186595	6199180	-	Cre03.g192300.t1.2	Cre03.g192300.t1.2		6198996,6198573,6198089,6197195,6195597,6195159,6194460,6189134,6188711,6185960	6199210,6198854,6198418,6197833,6196315,6195270,6194852,6194290,6188868,6188458	
chr3	6199393	6204320	6200904	6204255	-	Cre03.g192350.t1.1	Cre03.g192350.t1.1		6204066,6203738,6203273,6202813,6202446,6201896,6201424,6199393	6204320,6203881,6203418,6202999,6202582,6202028,6201644,6201115	
chr3	6204421	6209802	6204593	6209179	+	Cre03.g192400.t1.1	Cre03.g192400.t1.1		6204421,6207091,6207514,6208671	6206841,6207335,6208541,6209802	
chr3	6210061	6226365	6210547	6224933	+	CYA3	Cre03.g192450.t1.1		6210061,6211201,6211442,6211931,6212129,6213810,6214312,6214587,6214787,6217262,6219687,6221239,6222404	6211048,6211279,6211821,6211984,6213658,6214061,6214412,6214671,6217043,6219558,6221055,6222206,6226365	possible guanylate or adenylate cyclase; null-allele mutant was isolated (PMID 29743196)
chr3	6226421	6230826	6226566	6230437	+	Cre03.g192501.t1.1	Cre03.g192501.t1.1		6226421,6226959,6227877,6228623,6229455,6230033	6226901,6227565,6228183,6229228,6229739,6230826	
chr3	6230865	6247530	6231403	6247407	-	RAD50	Cre03.g192550.t1.1		6247389,6247070,6246735,6246385,6246004,6243254,6242911,6242556,6242197,6241685,6241230,6240909,6240554,6240248,6239811,6239228,6238751,6238166,6237754,6237231,6236780,6236403,6235841,6235473,6235101,6234760,6234389,6233928,6233607,6233346,6233032,6232664,6232227,6231863,6230865	6247530,6247174,6246821,6246474,6246150,6243370,6242994,6242657,6242331,6241849,6241365,6241014,6240686,6240334,6239987,6239446,6238918,6238333,6237933,6237356,6236934,6236508,6235999,6235568,6235186,6234835,6234442,6234076,6233697,6233441,6233096,6232727,6232326,6231969,6231502	Part of MRE11-RAD50-NBS1 complex. Functions in DNA damage repair and signaling.
chr3	6248020	6252298	6248457	6251877	+	THK1	Cre03.g192600.t1.1		6248020,6248721,6249185,6251494,6251745	6248460,6248964,6249282,6251625,6252298	
chr3	6252361	6253012	6252508	6252713	+	Cre03.g192676.t1.1	Cre03.g192676.t1.1		6252361	6253012	
chr3	6253191	6256282	6253650	6255885	+	Cre03.g192750.t1.1	Cre03.g192750.t1.1		6253191,6254009,6254846,6255170,6255433	6253707,6254658,6254948,6255254,6256282	
chr3	6262545	6273170	6263301	6272787	-	Cre03.g192850.t1.2	Cre03.g192850.t1.2		6272590,6272147,6271835,6271096,6270342,6269849,6269520,6269187,6268757,6268437,6267899,6267433,6266821,6266538,6266164,6265822,6265343,6265035,6264683,6263643,6262545	6273170,6272318,6271993,6271314,6270473,6269962,6269633,6269346,6268934,6268589,6268073,6267626,6267092,6266614,6266306,6265969,6265465,6265133,6264793,6264537,6263301	
chr3	6273271	6281022	6273368	6279347	+	OPR17	Cre03.g192900.t1.1		6273271,6273578,6273771,6275684,6276165,6277079	6273413,6273628,6275495,6276025,6276881,6281022	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr3	6281491	6284962	6282140	6284383	+	Cre03.g192950.t1.2	Cre03.g192950.t1.2		6281491,6282499,6283342,6283663,6283931	6282197,6283145,6283444,6283747,6284962	
chr3	6284964	6287860	6285455	6287473	-	HAD5	Cre03.g193000.t1.1		6287734,6287314,6286960,6286559,6286288,6286105,6285748,6284964	6287860,6287474,6287033,6286666,6286372,6286113,6285861,6285542	
chr3	6288021	6291182	6288046	6291060	+	Cre03.g193050.t1.1	Cre03.g193050.t1.1		6288021,6288528,6289186,6289573,6289840,6290313,6290679	6288341,6288923,6289331,6289708,6290141,6290522,6291182	
chr3	6291211	6294860	6291680	6294748	-	Cre03.g193100.t1.1	Cre03.g193100.t1.1		6294682,6294505,6294348,6292442,6292156,6291211	6294860,6294598,6294431,6294228,6292225,6292021	null-allele mutant was isolated (PMID 29743196)
chr3	6295100	6296910	6295600	6296740	-	Cre03.g193150.t1.2	Cre03.g193150.t1.2		6296620,6296325,6296091,6295100	6296910,6296441,6296168,6295795	
chr3	6297021	6299343	6297191	6299239	+	Cre03.g193200.t1.2	Cre03.g193200.t1.2		6297021,6298135	6297800,6299343	
chr3	6299391	6301499	6299521	6300760	+	Cre03.g193250.t1.2	Cre03.g193250.t1.2		6299391,6299825,6300113,6300451	6299662,6299970,6300239,6301499	
chr3	6302483	6305070	6303310	6304574	-	CPLD56	Cre03.g193300.t1.2		6304535,6303734,6302483	6305070,6304274,6303555	Conserved in the Plant Lineage and Diatoms
chr3	6306105	6310237	6307636	6310159	-	DSP7	Cre03.g193350.t1.1		6310102,6309830,6309416,6309133,6308677,6308370,6308075,6306105	6310237,6310009,6309512,6309190,6308783,6308453,6308173,6307860	Dual-Specificity Protein Phosphatase Homolog 7; IBR5 (indole-3-butyric acid response 5); MAP Kinase Phosphatase 7; Mitogen-Activated Protein Kinase Phosphatase 7
chr3	6310351	6315138	6310662	6314399	+	Cre03.g193400.t1.2	Cre03.g193400.t1.2		6310351,6311260,6312041,6312431,6312977,6313415,6314087	6311019,6311769,6312204,6312739,6313241,6313864,6315138	
chr3	6315345	6320310	6316277	6320022	-	Cre03.g193450.t1.1	Cre03.g193450.t1.1		6318490,6318095,6317713,6317273,6315345	6320310,6318305,6317928,6317425,6317054	null-allele mutant was isolated (PMID 29743196)
chr3	6320421	6327099	6320694	6325408	+	CGLD15	Cre03.g193500.t1.2		6320421,6320886,6321541,6322842,6323235,6323857,6324396	6320751,6321044,6322698,6323027,6323705,6324167,6327099	triacylglycerol lipase-like protein
chr3	6327471	6329854	6327585	6329637	+	MRPL46	Cre03.g193550.t1.1		6327471,6327744,6328040,6328205,6328463,6328832,6329210,6329562	6327672,6327944,6328090,6328260,6328585,6328932,6329295,6329854	
chr3	6329875	6333680	6330734	6333499	-	Cre03.g193576.t1.1	Cre03.g193576.t1.1		6333484,6332591,6332299,6332096,6331431,6331184,6329875	6333680,6332653,6332369,6332173,6331533,6331259,6330826	
chr3	6333735	6336590	6334429	6336450	-	Cre03.g193600.t1.2	Cre03.g193600.t1.2		6336376,6335330,6335068,6333735	6336590,6335432,6335152,6334881	
chr3	6333735	6337000	6334429	6336632	-	Cre03.g193600.t2.1	Cre03.g193600.t2.1		6336591,6335330,6335068,6333735	6337000,6335432,6335152,6334881	
chr3	6339235	6341020	6339437	6340570	-	Cre03.g193650.t1.2	Cre03.g193650.t1.2		6340513,6339564,6339235	6341020,6340213,6339447	
chr3	6341215	6341930	6341503	6341711	-	Cre03.g193676.t1.1	Cre03.g193676.t1.1		6341215	6341930	
chr3	6342635	6347304	6343239	6347043	-	Cre03.g193700.t1.1	Cre03.g193700.t1.1		6346950,6346674,6346358,6346002,6345634,6345312,6344912,6344661,6344465,6344079,6343796,6343571,6342635	6347304,6346808,6346433,6346185,6345773,6345435,6345039,6344752,6344536,6344206,6343910,6343630,6343371	
chr3	6347805	6351846	6348107	6351402	+	GCST	Cre03.g193750.t1.1		6347805,6348369,6348992,6349326,6349802,6350178,6350467,6350935,6351263	6348273,6348499,6349123,6349415,6349986,6350275,6350647,6351072,6351846	Glycine cleavage system, T protein, (aminomethyltransferase from domain homology)
chr3	6351849	6357154	6352316	6356453	-	TSN1	Cre03.g193800.t1.1		6356870,6356652,6356435,6356051,6355551,6355189,6354765,6354310,6353935,6353244,6352799,6351849	6357154,6356765,6356545,6356167,6355817,6355311,6354868,6354415,6354113,6353325,6353062,6352559	
chr3	6357248	6360946	6357481	6360333	+	SCLA1	Cre03.g193850.t1.2		6357248,6357664,6357972,6358193,6358362,6358769,6359074,6359432,6359799,6360154	6357510,6357721,6358064,6358216,6358571,6358873,6359136,6359551,6359907,6360946	
chr3	6360995	6363176	6361228	6362291	+	Cre03.g193900.t1.2	Cre03.g193900.t1.2		6360995,6361525,6361950	6361339,6361768,6363176	histone-like transcription factor
chr3	6363990	6365504	6364661	6365462	-	Cre03.g193950.t1.2	Cre03.g193950.t1.2		6365371,6365213,6364916,6363990	6365504,6365276,6365093,6364766	Putative ferredoxin thioredoxin reductase
chr3	6366075	6371205	6366317	6370244	+	Cre03.g194000.t1.1	Cre03.g194000.t1.1		6366075,6366448,6367052,6367588,6367892,6368362,6368717,6369082,6369563,6370040	6366337,6366702,6367286,6367708,6368033,6368518,6368779,6369354,6369745,6371205	Pre-mRNA splicing factor, may interact PRP18 and be recruited to the splicesome
chr3	6374225	6377212	6374285	6376777	+	Cre03.g194050.t1.2	Cre03.g194050.t1.2		6374225,6374745,6376207,6376715	6374465,6376028,6376507,6377212	
chr3	6377470	6386744	6378789	6386410	-	MAPKKK3	Cre03.g194100.t1.2		6386192,6385969,6385490,6385022,6384492,6380339,6379765,6379419,6377470	6386744,6386107,6385597,6385128,6384778,6384335,6380057,6379575,6379189	MAPKKK3; MAP (Mitogen-Activated) Kinase Kinase Kinase Homolog 3; MEK Kinase 3; MAP3K3
chr3	6390635	6393070	6390718	6392761	+	Cre03.g194150.t1.1	Cre03.g194150.t1.1		6390635,6391035,6391292,6392139,6392497	6390938,6391121,6391764,6392309,6393070	
chr3	6393585	6399734	6393736	6398925	+	PDH2	Cre03.g194200.t1.2		6393585,6393904,6394212,6394984,6395622,6396717,6397243,6397893,6398283,6398811	6393812,6394026,6394307,6395135,6395771,6396890,6397281,6397995,6398368,6399734	Putative Pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase E1 beta subunit, probably plastid precursor; similar to Arabidopsis PDH E1 beta (GenBank NP_174304) and predicted organelle targeting sequence by Target-P
chr3	6399739	6403444	6400352	6403225	-	Cre03.g194250.t1.2	Cre03.g194250.t1.2		6403102,6402938,6402740,6402289,6401910,6401507,6401262,6400843,6399739	6403444,6403025,6402798,6402364,6402028,6401591,6401291,6400924,6400410	
chr3	6403539	6407184	6404151	6406929	-	Cre03.g194300.t1.2	Cre03.g194300.t1.2		6406720,6406498,6405675,6405142,6404603,6403539	6407184,6406543,6406178,6405303,6404770,6404280	
chr3	6407325	6411091	6407423	6410271	+	Cre03.g194350.t1.2	Cre03.g194350.t1.2		6407325,6407858,6408425,6408879,6409672,6409902	6407738,6408157,6408688,6409535,6409725,6411091	
chr3	6411156	6414644	6411710	6414555	-	EIF3I	Cre03.g194400.t1.2		6414505,6414376,6414206,6413787,6413042,6412681,6412241,6411978,6411156	6414644,6414415,6414299,6414130,6413242,6412767,6412320,6412042,6411724	putative Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta receptor interacting protein 1)
chr3	6414715	6417044	6415024	6416846	-	CGL24	Cre03.g194450.t1.1		6416808,6416674,6416497,6416311,6415973,6415674,6415313,6414715	6417044,6416710,6416543,6416374,6416186,6415833,6415499,6415147	
chr3	6418619	6421684	6419349	6421273	-	Cre03.g194500.t1.1	Cre03.g194500.t1.1		6420866,6420574,6420268,6418619	6421684,6420682,6420352,6420038	
chr3	6421739	6424124	6422675	6423549	-	Cre03.g194517.t1.1	Cre03.g194517.t1.1		6421739	6424124	
chr3	6424179	6427984	6426496	6427556	-	Cre03.g194535.t1.2	Cre03.g194535.t1.2		6427536,6427402,6426696,6424179	6427984,6427451,6427309,6426502	
chr3	6428033	6430484	6429011	6430373	-	Cre03.g194567.t1.1	Cre03.g194567.t1.1		6430363,6429782,6428033	6430484,6429940,6429706	
chr3	6432425	6436227	6432561	6435485	+	Cre03.g194600.t1.1	Cre03.g194600.t1.1		6432425,6432848,6433242,6434153,6434483,6434796	6432608,6432944,6433969,6434261,6434567,6436227	
chr3	6437855	6440396	6438407	6439305	+	Cre03.g194616.t1.1	Cre03.g194616.t1.1		6437855,6438236,6438699,6439043	6438152,6438492,6438849,6440396	
chr3	6437855	6440396	6438407	6439305	+	Cre03.g194616.t2.1	Cre03.g194616.t2.1		6437855,6438236,6438699,6439043	6438148,6438492,6438849,6440396	
chr3	6443129	6447654	6444076	6446925	-	FAP121	Cre03.g194650.t1.1		6447367,6447099,6446215,6445689,6445204,6444904,6443129	6447654,6447256,6446926,6445934,6445437,6444988,6444697	Putative alcohol O-acetyltransferase; Similar to Guanylate Kinase
chr3	6447765	6456076	6447914	6455171	+	AGL1	Cre03.g194700.t1.1		6447765,6448139,6448567,6448826,6449116,6449508,6449864,6450369,6450636,6450980,6451220,6451816,6452392,6452862,6453156,6453658,6454023	6448017,6448372,6448658,6448980,6449381,6449730,6449995,6450539,6450783,6451038,6451582,6452028,6452571,6452978,6453282,6453787,6456076	Putative alpha-glucosidase (EC 3.2.1.20); similarity to arabidopsis [Aglu1; GenBank AAB82656] and sugar beet[GenBank BAA20343; PMID: 9178565] secreted alpha-glucosidase gene products; predicted mitochondrial targeting by Target-P, but location is uncertain
chr3	6456099	6457784	6457072	6457274	-	Cre03.g194750.t1.1	Cre03.g194750.t1.1		6457454,6456099	6457784,6457339	
chr3	6458902	6463224	6459373	6463094	-	Cre03.g194800.t1.2	Cre03.g194800.t1.2		6463046,6462909,6462244,6461979,6461578,6461085,6460747,6460363,6460006,6459708,6458902	6463224,6462959,6462324,6462031,6461813,6461227,6460893,6460425,6460192,6459850,6459517	
chr3	6463342	6466758	6463421	6466074	+	MDN1	Cre03.g194850.t1.2		6463342,6463519,6463937,6464231,6465000,6465363,6465885	6463449,6463754,6464110,6464461,6465119,6465452,6466758	Malate dehydrogenase (MDH) (= malic dehydrogenase) [EC:1.1.1.37]; NAD-dependent; sodium acetate-induced in Chlamydomonas reinhardtii; nuclear gene; gene product is localized in the chloroplast; Genbank entry U42979, as MDH2; present in thylakoid-enriched
chr3	6466932	6483554	6469105	6483204	-	CYA4	Cre03.g194900.t1.1		6482964,6482232,6481381,6480757,6480276,6479644,6479263,6478926,6478593,6478092,6477727,6477457,6477197,6473520,6472724,6472411,6471732,6471194,6470869,6470360,6469876,6466932	6483554,6482382,6481825,6480961,6480500,6479988,6479397,6479036,6478757,6478352,6477843,6477471,6477271,6476800,6473164,6472522,6471902,6471349,6471005,6470475,6470057,6469648	Lipocalins form a diverse yet poorly understood family of proteins, composed mainly of extracellular ligand-binding proteins displaying high specificity for small hydrophobic molecules
chr3	6484811	6488322	6485465	6488201	-	RPOD	Cre03.g194950.t1.1		6487922,6486657,6486227,6484811	6488322,6487810,6486490,6486027	Chloroplast RNA polymerase sigma factor RpoD, chloroplast precursor [PMID: 16143845]
chr3	6490108	6492044	6491363	6491953	-	Cre03.g195000.t1.2	Cre03.g195000.t1.2		6491842,6490108	6492044,6491600	
chr3	6492175	6498616	6492610	6495961	+	Cre03.g195050.t1.2	Cre03.g195050.t1.2		6492175,6493097,6493402,6493878,6494183,6494447,6494718,6494934,6495577	6492749,6493188,6493493,6493977,6494253,6494558,6494781,6495142,6498616	
chr3	6498665	6502256	6498922	6500402	+	Cre03.g195100.t1.1	Cre03.g195100.t1.1		6498665	6502256	
chr3	6503085	6507876	6503297	6505971	+	Cre03.g195150.t1.1	Cre03.g195150.t1.1		6503085	6507876	
chr3	6508239	6512167	6508624	6512035	-	CGL76	Cre03.g195200.t1.2		6511862,6511436,6511164,6510896,6510549,6510144,6509895,6509679,6509152,6508875,6508239	6512167,6511564,6511269,6510967,6510602,6510248,6509949,6509755,6509293,6508938,6508733	
chr3	6512219	6515394	6512389	6515248	-	Cre03.g195250.t1.1	Cre03.g195250.t1.1		6515156,6514703,6514305,6513964,6513179,6512781,6512219	6515394,6514874,6514506,6514182,6513759,6512975,6512542	
chr3	6515450	6519864	6517385	6519603	-	Cre03.g195300.t1.2	Cre03.g195300.t1.2		6515450	6519864	
chr3	6519979	6520934	6520611	6520825	-	Cre03.g195326.t1.1	Cre03.g195326.t1.1		6519979	6520934	
chr3	6522383	6525648	6523335	6525499	-	PIMT1	Cre03.g195350.t1.1		6525217,6524920,6524699,6524307,6523884,6522383	6525648,6524970,6524768,6524480,6524035,6523647	Hypothetical conserved protein similar to Protein-L-isoaspartate(D-aspartate) O-methyltransferase proteins. One of two proteins with predicted Asp-Methyltransferase activity (see PIMT2).
chr3	6525723	6531458	6526000	6531293	-	Cre03.g195366.t1.2	Cre03.g195366.t1.2		6531211,6530897,6530620,6530180,6529904,6529530,6529108,6528796,6528603,6528104,6527571,6526815,6526525,6525723	6531458,6531137,6530794,6530470,6530014,6529772,6529398,6528945,6528663,6528509,6527936,6527364,6526582,6526296	
chr3	6531589	6532952	6531862	6532526	+	Cre03.g195388.t1.1	Cre03.g195388.t1.1		6531589,6531848,6532113,6532450	6531698,6531919,6532243,6532952	
chr3	6532963	6534368	6533240	6534156	-	Cre03.g195410.t1.2	Cre03.g195410.t1.2		6534012,6533660,6532963	6534368,6533753,6533530	
chr3	6534469	6537600	6534550	6537101	+	POC11	Cre03.g195450.t1.1		6534469,6534848,6535130,6535601,6535952,6536366,6536767	6534683,6534975,6535387,6535769,6536136,6536604,6537600	Found in basal body proteome [PMID: 15964273].
chr3	6537749	6541880	6537848	6541062	+	TGL9	Cre03.g195500.t2.1		6537749,6538269,6538488,6538959,6539235,6539478,6539739,6540065,6540479,6540751	6538069,6538395,6538610,6539021,6539307,6539590,6539845,6540170,6540599,6541880	
chr3	6537679	6541880	6538269	6541062	+	TGL9	Cre03.g195500.t1.2		6537679,6538269,6538488,6538959,6539235,6539478,6539739,6540065,6540479,6540751	6538069,6538395,6538610,6539021,6539307,6539590,6539845,6540170,6540599,6541880	
chr3	6541939	6545567	6542118	6545354	+	Cre03.g195550.t1.2	Cre03.g195550.t1.2		6541939,6543872	6543717,6545567	null-allele mutant was isolated (PMID 29743196)
chr3	6545729	6549170	6545797	6548716	+	Cre03.g195600.t1.2	Cre03.g195600.t1.2		6545729,6546142,6546451,6546721,6547470,6547738,6547948	6546042,6546271,6546545,6547287,6547564,6547796,6549170	
chr3	6549178	6550997	6549857	6550953	-	PRPS10	Cre03.g195650.t1.2		6550637,6549178	6550997,6550051	imported to chloroplast; Chloroplast Small Ribosomal Subunit Protein S1
chr3	6551101	6555278	6551596	6554965	-	Cre03.g195700.t1.1	Cre03.g195700.t1.1		6554554,6554204,6553802,6553524,6553166,6552720,6552142,6551101	6555278,6554290,6554023,6553583,6553267,6552833,6552336,6551893	
chr3	6555429	6560363	6555516	6560099	+	Cre03.g195750.t1.1	Cre03.g195750.t1.1		6555429,6555615,6555863,6556155,6556402,6556772,6557218,6557674,6558196,6558556,6558829,6559285,6559706	6555535,6555716,6555938,6556257,6556597,6556971,6557493,6557739,6558337,6558650,6558930,6559494,6560363	
chr3	6560408	6564498	6561153	6564470	-	Cre03.g195850.t1.2	Cre03.g195850.t1.2		6564456,6563995,6563712,6563440,6563208,6562914,6562004,6560408	6564498,6564197,6563811,6563566,6563231,6563049,6562722,6561153	
chr3	6564629	6568940	6564665	6568004	+	Cre03.g195900.t1.1	Cre03.g195900.t1.1		6564629,6564977,6566961,6567405	6564879,6566832,6567198,6568940	
chr3	6570079	6574672	6570205	6573826	+	Cre03.g195950.t1.2	Cre03.g195950.t1.2		6570079,6570492,6570877,6571921,6572609,6572853,6573143	6570252,6570588,6571658,6572409,6572717,6572937,6574672	
chr3	6574758	6577768	6574930	6577649	-	Cre03.g196000.t1.1	Cre03.g196000.t1.1		6577618,6577426,6577200,6576975,6576674,6576396,6575897,6575609,6575306,6574758	6577768,6577541,6577268,6577052,6576843,6576510,6576281,6575723,6575429,6575125	
chr3	6577879	6579520	6578182	6579164	+	Cre03.g196050.t1.2	Cre03.g196050.t1.2		6577879,6578415,6578710,6578981	6578254,6578616,6578783,6579520	
chr3	6579523	6582798	6579847	6582532	-	Cre03.g196100.t1.2	Cre03.g196100.t1.2		6582437,6582016,6581611,6580995,6580519,6580171,6579523	6582798,6582265,6581845,6581308,6580806,6580402,6579999	
chr3	6582909	6585599	6583647	6584843	+	Cre03.g196150.t1.2	Cre03.g196150.t1.2		6582909,6583411,6584162,6584627	6583309,6583944,6584299,6585599	
chr3	6585729	6588426	6585821	6587859	+	Cre03.g196200.t1.1	Cre03.g196200.t1.1		6585729,6585942,6586230,6586552,6586866,6587229,6587394,6587679	6585860,6586086,6586339,6586664,6587028,6587270,6587489,6588426	
chr3	6585729	6588426	6586237	6587859	+	Cre03.g196200.t2.1	Cre03.g196200.t2.1		6585729,6586230,6586552,6586866,6587229,6587394,6587679	6585860,6586339,6586664,6587028,6587270,6587489,6588426	
chr3	6588479	6592747	6588611	6591487	+	CEP3	Cre03.g196250.t1.1		6588479,6588907,6590106,6591012,6591424	6588702,6589898,6590662,6591159,6592747	Cysteine-type endopeptidase, papain type
chr3	6592919	6596410	6593192	6595982	+	Cre03.g196300.t1.2	Cre03.g196300.t1.2		6592919,6593187,6593285,6593700,6594075,6594421,6595115,6595519	6593074,6593214,6593370,6593837,6594249,6594848,6595353,6596410	
chr3	6596913	6599020	6597129	6598419	+	Cre03.g196350.t1.2	Cre03.g196350.t1.2		6596913,6597343,6597551,6597958,6598254	6597228,6597432,6597658,6598068,6599020	
chr3	6599026	6604218	6599351	6603995	-	Cre03.g196400.t1.1	Cre03.g196400.t1.1		6603854,6603413,6602897,6602384,6602165,6601925,6601728,6601404,6599982,6599549,6599026	6604218,6603548,6603079,6602568,6602208,6602024,6601784,6601537,6601227,6599809,6599417	ts-lethal mutant was isolated (PMID 29743196)
chr3	6604273	6609018	6604877	6608942	-	Cre03.g196450.t1.2	Cre03.g196450.t1.2		6608564,6608076,6607765,6607483,6607293,6606926,6606514,6606237,6605917,6605573,6605291,6604273	6609018,6608252,6607875,6607632,6607334,6607069,6606648,6606349,6606066,6605718,6605427,6605123	
chr3	6609073	6612718	6610040	6612594	-	Cre03.g196500.t1.1	Cre03.g196500.t1.1		6612440,6612175,6611907,6611578,6611347,6611132,6610942,6610745,6610476,6609073	6612718,6612243,6612040,6611761,6611446,6611178,6611028,6610794,6610600,6610371	
chr3	6612783	6614348	6613283	6614216	-	Cre03.g196550.t1.2	Cre03.g196550.t1.2		6614195,6613738,6612783	6614348,6613939,6613399	
chr3	6614469	6619860	6614688	6619031	+	RAD17	Cre03.g196600.t1.1		6614469,6616300,6616930,6617671,6617964,6618366	6616167,6616746,6617508,6617771,6618199,6619860	
chr3	6619863	6623018	6619911	6622078	-	RAD10	Cre03.g196651.t1.1		6622881,6622516,6621872,6621566,6621282,6621031,6620714,6619863	6623018,6622769,6622409,6621686,6621338,6621093,6620890,6620520	homolog of Rad1
chr3	6623119	6625550	6623652	6624663	+	Cre03.g196700.t1.1	Cre03.g196700.t1.1		6623119,6623900,6624196	6623696,6624000,6625550	
chr3	6627309	6630100	6627445	6628572	+	Cre03.g196750.t1.1	Cre03.g196750.t1.1		6627309,6627890,6628189	6627507,6627990,6630100	
chr3	6630529	6631808	6630659	6631491	+	Cre03.g196800.t1.2	Cre03.g196800.t1.2		6630529,6630998,6631453	6630678,6631117,6631808	null-allele mutant was isolated (PMID 29743196)
chr3	6631929	6636910	6632218	6636220	+	Cre03.g196850.t1.2	Cre03.g196850.t1.2		6631929,6632467,6632793,6633578,6634393,6634844,6635209,6635600,6636015	6632341,6632538,6632927,6633917,6634586,6635037,6635349,6635770,6636910	
chr3	6637789	6639690	6637936	6638917	+	Cre03.g196900.t1.2	Cre03.g196900.t1.2		6637789,6638365	6638158,6639690	
chr3	6639693	6642668	6639927	6642395	-	Cre03.g196950.t1.2	Cre03.g196950.t1.2		6642173,6641765,6641400,6641128,6640810,6640583,6639693	6642668,6641956,6641574,6641261,6641013,6640697,6640418	
chr3	6642769	6645880	6642843	6645325	+	Cre03.g197000.t1.2	Cre03.g197000.t1.2		6642769,6643364,6643781,6644233,6644572,6645124	6642948,6643456,6644044,6644371,6644762,6645880	null-allele mutant was isolated (PMID 29743196)
chr3	6646341	6648571	6646889	6648345	-	HTV2	Cre03.g197050.t1.2		6648306,6647905,6647670,6647390,6647162,6646341	6648571,6648191,6647742,6647482,6647220,6646947	
chr3	6650149	6654530	6651016	6652808	+	Cre03.g197100.t1.2	Cre03.g197100.t1.2		6650149,6651008,6651300,6651614	6650409,6651114,6651444,6654530	
chr3	6655009	6658480	6655155	6658225	+	Cre03.g197150.t1.1	Cre03.g197150.t1.1		6655009,6656810,6657700	6656648,6657536,6658480	
chr3	6659592	6661528	6659651	6661374	-	Cre03.g197200.t1.1	Cre03.g197200.t1.1		6660357,6659592	6661528,6659993	
chr3	6661649	6667090	6662437	6666540	+	Cre03.g197250.t1.1	Cre03.g197250.t1.1		6661649,6662050,6662231,6663383,6663543,6663797,6664215,6665645	6661919,6662109,6663121,6663434,6663661,6664057,6665524,6667090	
chr3	6667159	6672356	6667337	6671608	+	Cre03.g197300.t1.1	Cre03.g197300.t1.1		6667159,6667517,6667932,6668355,6668641	6667373,6667680,6668211,6668447,6672356	
chr3	6672364	6677025	6672630	6676806	-	Cre03.g197350.t1.2	Cre03.g197350.t1.2		6676764,6676570,6676125,6675843,6675568,6675384,6675076,6674698,6673991,6673649,6673412,6673121,6672364	6677025,6676673,6676293,6676012,6675742,6675437,6675270,6674934,6674533,6673833,6673523,6673282,6672984	
chr3	6677179	6682498	6677529	6681391	+	SLP1	Cre03.g197400.t1.2		6677179,6677691,6678092,6678528,6678980,6679464,6679805,6680170,6680438,6680728	6677540,6677931,6678412,6678821,6679283,6679638,6680004,6680327,6680551,6682498	extracellular; contains Sel1-like repeats which are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway; null-allele passenger mutation was isolated (PMID 29743196)
chr3	6682549	6695070	6683169	6694283	+	Cre03.g197450.t1.1	Cre03.g197450.t1.1		6682549,6683138,6683605,6683968,6684263,6686044,6687107,6688041,6688318,6688726,6689189,6689534	6682890,6683415,6683799,6684095,6685901,6686984,6687871,6688124,6688540,6689045,6689345,6695070	
chr3	6695729	6699170	6695822	6698330	+	MOT6	Cre03.g197500.t2.1		6695729,6696211,6696543,6696766,6697001,6697433,6697744,6698105	6696116,6696253,6696637,6696853,6697185,6697635,6697981,6699170	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr3	6695119	6699170	6695822	6698330	+	MOT6	Cre03.g197500.t1.2		6695119,6695792,6696211,6696543,6696766,6697001,6697433,6697744,6698105	6695304,6696116,6696253,6696637,6696853,6697185,6697635,6697981,6699170	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr3	6699309	6700470	6699438	6699941	+	Cre03.g197513.t1.2	Cre03.g197513.t1.2		6699309,6699693,6699897	6699527,6699730,6700470	
chr3	6700867	6704265	6701710	6704171	-	Cre03.g197550.t1.2	Cre03.g197550.t1.2		6703668,6703417,6703030,6702748,6702456,6702185,6700867	6704265,6703490,6703283,6702931,6702627,6702344,6701989	
chr3	6704360	6709537	6704554	6707681	+	Cre03.g197600.t1.1	Cre03.g197600.t1.1		6704360,6704767,6705153,6705348,6705611,6705956,6706140,6706553,6706898,6707276	6704668,6705017,6705227,6705441,6705869,6706014,6706433,6706798,6707182,6709537	
chr3	6709541	6711842	6710033	6711810	-	Cre03.g197650.t1.2	Cre03.g197650.t1.2		6711762,6711276,6710984,6710615,6710313,6709541	6711842,6711464,6711058,6710838,6710442,6710162	
chr3	6711996	6721367	6712096	6720951	+	HLM8	Cre03.g197700.t1.2		6711996,6712355,6712487,6712691,6713032,6714140,6714408,6714593,6714955,6715890,6716229,6716662,6716852,6717143,6717427,6717652,6718184,6718500,6720010,6720299,6720494,6720714	6712155,6712400,6712582,6712895,6714029,6714262,6714470,6714827,6715775,6716102,6716510,6716756,6716944,6717287,6717549,6717777,6718363,6719853,6720156,6720326,6720581,6721367	Protein contains a SET domain with similarity to Arabidopsis thaliana ATX1, SET27, SDG27 (At2g3165).  ChromoDB SDG344
chr3	6721456	6723906	6721524	6723326	+	GPX3	Cre03.g197750.t1.2		6721456,6721895,6722096,6722325,6722710,6723073,6723268	6721680,6721987,6722182,6722421,6722770,6723123,6723906	Probably organelle-targetted(prediction programs)
chr3	6724860	6730386	6726297	6730173	-	Cre03.g197800.t1.1	Cre03.g197800.t1.1		6729591,6729330,6728639,6728208,6727857,6727490,6726680,6724860	6730386,6729469,6729212,6728538,6728047,6727720,6727276,6726555	
chr3	6730496	6734284	6730573	6733057	+	Cre03.g197850.t1.1	Cre03.g197850.t1.1		6730496,6731112,6731393,6731554,6731959,6732081,6732282,6732489,6732734,6732991	6730676,6731240,6731445,6731775,6731978,6732158,6732316,6732562,6732865,6734284	
chr3	6730496	6734284	6730573	6733057	+	Cre03.g197850.t2.1	Cre03.g197850.t2.1		6730496,6731112,6731393,6731554,6731959,6732106,6732282,6732489,6732734,6732991	6730676,6731240,6731445,6731775,6731982,6732158,6732316,6732562,6732865,6734284	
chr3	6735646	6739329	6735696	6738793	+	Cre03.g197900.t1.1	Cre03.g197900.t1.1		6735646,6735902,6736237,6736489,6737023,6737492,6737722,6737974,6738318,6738653	6735838,6736151,6736368,6736858,6737293,6737550,6737828,6738132,6738469,6739329	
chr3	6739340	6740035	6739599	6739957	-	Cre03.g197950.t1.2	Cre03.g197950.t1.2		6739340	6740035	
chr3	6740176	6744187	6740520	6742338	+	Cre03.g198000.t1.2	Cre03.g198000.t1.2		6740176,6740908,6741195,6741464,6741633,6741983,6742260	6740665,6741115,6741373,6741537,6741827,6742099,6744187	
chr3	6745513	6750420	6745631	6749492	+	Cre03.g198050.t1.2	Cre03.g198050.t1.2		6745513,6745853,6745984,6746301,6746676,6746973,6747235,6747770,6747947,6748195,6748339,6748526	6745750,6745904,6746068,6746563,6746868,6747100,6747656,6747841,6748075,6748240,6748431,6750420	
chr3	6751582	6753465	6752066	6752790	-	BET1	Cre03.g198100.t1.2		6753168,6753034,6752727,6752519,6752320,6751582	6753465,6753058,6752810,6752575,6752379,6752159	Expressed Protein. Similar to BET1-type Qc-SNAREs involved in ER/Golgi traffic.
chr3	6753586	6757066	6753666	6755495	+	ALB3.3	Cre03.g198150.t1.1		6753586,6753935,6754697,6755025,6755328	6753785,6754520,6754910,6755216,6757066	One of four proteins related to the Arabidopsis ALBINO3 and yeast OXA1 proteins
chr3	6758096	6778656	6758463	6778196	+	GSL4	Cre03.g198200.t1.1		6758096,6760420,6760610,6760876,6761218,6761598,6761891,6762092,6762461,6762670,6763089,6763292,6763486,6763848,6764127,6764333,6766702,6766862,6767093,6767380,6767553,6768997,6769326,6769499,6770055,6770240,6770594,6770838,6771060,6771325,6771638,6771890,6772294,6772592,6772919,6773239,6773583,6773834,6774267,6774615,6774937,6775227,6775364,6775741,6776068,6776494,6776859,6777253,6777572	6760323,6760468,6760761,6761013,6761418,6761753,6761946,6762325,6762542,6762840,6763205,6763355,6763675,6763959,6764219,6764459,6766774,6766930,6767246,6767418,6768853,6769214,6769410,6769958,6770122,6770413,6770705,6770947,6771174,6771474,6771727,6772133,6772461,6772735,6773072,6773412,6773670,6774077,6774492,6774784,6775058,6775259,6775473,6775878,6776319,6776650,6776995,6777415,6778656	GT48 family glycosyl transferase (1,3-beta-D-glucan synthase)
chr3	6808526	6809885	6808838	6809724	-	Cre03.g198212.t1.1	Cre03.g198212.t1.1		6809116,6808526	6809885,6808929	
chr3	6810096	6814462	6810207	6813194	+	Cre03.g198224.t1.1	Cre03.g198224.t1.1		6810096,6810853,6811199,6811561,6812221,6812711	6810335,6811063,6811417,6812060,6812491,6814462	
chr3	6814530	6819525	6816995	6818789	-	Cre03.g198236.t1.1	Cre03.g198236.t1.1		6818500,6818019,6817407,6814530	6819525,6818312,6817741,6817253	
chr3	6837497	6839573	6837696	6839462	-	Cre03.g198250.t1.2	Cre03.g198250.t1.2		6839443,6839164,6838744,6837497	6839573,6839373,6838886,6838092	belongs to a small gene family specific of Chlamydomonas
chr3	6839620	6848745	6841831	6845826	-	Cre03.g198288.t1.1	Cre03.g198288.t1.1		6848737,6845674,6843336,6842444,6839620	6848745,6845869,6844846,6842506,6841962	probably from a transposable element
chr3	6839620	6848765	6841831	6845826	-	Cre03.g198288.t2.1	Cre03.g198288.t2.1		6848746,6845674,6843336,6842444,6839620	6848765,6845869,6844846,6842506,6841962	probably from a transposable element
chr3	6839620	6844955	6841831	6844507	-	Cre03.g198288.t3.1	Cre03.g198288.t3.1		6843336,6842444,6839620	6844955,6842506,6841962	probably from a transposable element
chr3	6860157	6866965	6861698	6866863	-	Cre03.g198400.t1.2	Cre03.g198400.t1.2		6866735,6866463,6865983,6865629,6864986,6864309,6863829,6863475,6862832,6862401,6860157	6866965,6866519,6866193,6865847,6865485,6864365,6864039,6863693,6863331,6862671,6862181	
chr3	6867166	6870138	6867346	6869511	+	Cre03.g198450.t1.2	Cre03.g198450.t1.2		6867166,6868141,6868355,6868727,6869102,6869370	6867954,6868214,6868593,6868921,6869173,6870138	
chr3	6870140	6874885	6870280	6874797	-	Cre03.g198467.t1.1	Cre03.g198467.t1.1		6871967,6870140	6874885,6871272	
chr3	6872231	6874885	6872299	6874797	-	Cre03.g198467.t2.1	Cre03.g198467.t2.1		6872569,6872231	6874885,6872441	
chr3	6875556	6878967	6876028	6878599	+	Cre03.g198500.t1.1	Cre03.g198500.t1.1		6875556,6876618,6878470	6876455,6878308,6878967	
chr3	6889760	6892435	6890168	6892314	-	Cre03.g198550.t1.2	Cre03.g198550.t1.2		6891003,6890805,6889760	6892435,6890888,6890663	
chr3	6889760	6891245	6890168	6891186	-	Cre03.g198550.t2.1	Cre03.g198550.t2.1		6891003,6890805,6889760	6891245,6890888,6890663	
chr3	6904975	6908416	6905188	6908166	+	Cre03.g198600.t1.2	Cre03.g198600.t1.2		6904975,6905688,6906152,6908037	6905559,6905989,6907875,6908416	
chr3	6911499	6928714	6912462	6928439	-	Cre03.g198651.t1.1	Cre03.g198651.t1.1		6928237,6927986,6927429,6927017,6926540,6925569,6925022,6924664,6923440,6921885,6920869,6919666,6918953,6918177,6917183,6912554,6911499	6928714,6928105,6927866,6927177,6926860,6926397,6925405,6924924,6924496,6922630,6921633,6920395,6919541,6918900,6917966,6913271,6912462	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr3	6928855	6933936	6928913	6931077	+	Cre03.g198700.t1.1	Cre03.g198700.t1.1		6928855,6929488,6929866,6930275,6930691	6929368,6929703,6930122,6930520,6933936	
chr3	8352987	8363912	8353133	8363910	+	Cre03.g198750.t1.1	Cre03.g198750.t1.1		8352987,8353560,8354512,8355794,8356349,8356766,8357142,8358114,8358368,8358847,8359744,8360317,8360599,8361260,8361776,8362255,8363086,8363464,8363816,8363876	8353194,8354014,8354783,8356031,8356612,8356843,8357687,8358167,8358622,8358951,8360088,8360381,8360681,8361438,8361974,8362709,8363177,8363530,8363829,8363912	
chr3	8349841	8352816	8350011	8352126	-	Cre03.g198800.t1.2	Cre03.g198800.t1.2		8352352,8352026,8351794,8351601,8350953,8349841	8352816,8352243,8351909,8351684,8351259,8350772	
chr3	8340341	8343913	8340794	8343778	-	TL19	Cre03.g198850.t1.2		8343552,8342992,8342622,8342036,8341565,8341094,8340341	8343913,8343119,8342676,8342151,8341651,8341168,8340854	weak similarity to PsbP, the oxygen evolution enhancer of Photosystem II (OEE2)
chr3	8346139	8349786	8349050	8349414	-	Cre03.g198851.t1.1	Cre03.g198851.t1.1		8346139	8349786	
chr3	8379740	8392136	8380193	8391832	-	Cre03.g198863.t1.1	Cre03.g198863.t1.1		8391992,8391430,8380964,8380493,8379740	8392136,8391834,8381050,8380567,8380253	
chr3	8330414	8334041	8330484	8333565	+	CGL30	Cre03.g198950.t1.2		8330414,8331110,8331497,8331764,8332388,8332747,8333071,8333414	8330725,8331219,8331553,8331828,8332412,8332809,8333147,8334041	
chr3	8402537	8406598	8402661	8406371	+	Cre03.g198975.t1.1	Cre03.g198975.t1.1		8402537,8403976,8404282,8404892	8403855,8404113,8404710,8406598	
chr3	8321420	8329663	8322980	8329521	-	PHOT1	Cre03.g199000.t1.2		8329512,8329292,8329115,8327815,8327258,8326300,8325966,8325458,8325147,8324437,8323957,8323578,8321420	8329663,8329401,8329165,8328004,8327659,8326476,8326091,8325571,8325239,8324620,8324240,8323731,8323336	Blue-light receptor; found in flagella; regulates many biological processes including gametogenesis, chemotaxis, zygote maturation, light-stress response; contains two PAS and two protein kinase domains
chr3	8311694	8320773	8312511	8320644	-	Cre03.g199050.t1.2	Cre03.g199050.t1.2		8320512,8320091,8319652,8319158,8318783,8318521,8318110,8317790,8317319,8316898,8316615,8316297,8315983,8315637,8315328,8314916,8314397,8313994,8313644,8313151,8312844,8311694	8320773,8320229,8319767,8319336,8318879,8318583,8318295,8317888,8317475,8317085,8316725,8316387,8316098,8315774,8315429,8315038,8314531,8314092,8313777,8313311,8312920,8312574	
chr3	8410600	8414246	8411030	8413814	-	Cre03.g199087.t1.1	Cre03.g199087.t1.1		8413732,8412988,8412255,8411731,8410600	8414246,8413591,8412903,8412072,8411516	
chr3	8308908	8311403	8309207	8311164	-	Cre03.g199090.t1.2	Cre03.g199090.t1.2		8311290,8310834,8310530,8310146,8308908	8311403,8311181,8310601,8310267,8309844	
chr3	8304748	8308853	8305376	8308831	-	Cre03.g199100.t1.2	Cre03.g199100.t1.2		8308174,8307824,8307352,8306665,8304748	8308853,8307916,8307564,8307129,8306342	
chr3	8301784	8304328	8301949	8304022	+	Cre03.g199150.t1.2	Cre03.g199150.t1.2		8301784,8302125,8302326,8302665,8303296,8303654	8302035,8302170,8302449,8302819,8303398,8304328	NADH-ubiquinone oxidoreductase.  This is an NAD dependent epimerase/dehydratase (see SNE series).  This looks like NUOA9
chr3	8415267	8422885	8421269	8422175	+	Cre03.g199199.t1.1	Cre03.g199199.t1.1		8415267,8419360,8421196,8421608,8421950	8415996,8419536,8421482,8421730,8422885	
chr3	8287907	8301643	8288643	8301142	-	Cre03.g199200.t1.1	Cre03.g199200.t1.1		8301127,8299063,8298723,8297930,8297074,8296286,8295803,8295148,8294846,8294522,8294104,8293710,8293368,8292875,8292620,8292201,8291605,8291026,8290547,8290170,8289675,8289244,8288925,8287907	8301643,8301032,8298833,8298554,8297796,8296835,8296157,8295619,8294989,8294619,8294209,8293936,8293512,8293003,8292688,8292370,8291821,8291413,8290709,8290323,8289885,8289407,8289071,8288730	
chr3	8274808	8286903	8276303	8286623	-	CYG51	Cre03.g199250.t1.1		8286503,8286285,8285986,8285562,8278716,8277993,8277278,8276999,8276577,8274808	8286903,8286413,8286069,8285820,8285388,8278582,8277618,8277131,8276716,8276357	Protein domain similar to guanylate cyclase 1, soluble, beta 2 [Homo sapiens]
chr3	8274915	8286903	8276303	8286623	-	CYG51	Cre03.g199250.t2.1		8286503,8286285,8285986,8285562,8278716,8277993,8277278,8276999,8276577,8274915	8286903,8286413,8286069,8285820,8285388,8278582,8277618,8277131,8276716,8276357	Protein domain similar to guanylate cyclase 1, soluble, beta 2 [Homo sapiens]
chr3	8271194	8274804	8271371	8274344	+	Cre03.g199300.t1.2	Cre03.g199300.t1.2		8271194,8271768,8272054,8272541,8272928,8273129,8273690,8274170	8271448,8271798,8272170,8272661,8272984,8273442,8273866,8274804	
chr3	8422937	8431598	8423099	8430146	+	VPS16	Cre03.g199311.t1.1		8422937,8423353,8423766,8424259,8424912,8425245,8425495,8425821,8426192,8426708,8426926,8427071,8427240,8427546,8427802,8428886,8429157,8429344,8429519,8429708,8429870,8430041	8423136,8423678,8424158,8424430,8425081,8425334,8425599,8426083,8426417,8426776,8426988,8427146,8427337,8427659,8428098,8429025,8429232,8429385,8429572,8429748,8429966,8431598	Expressed protein. Vacuoleless, VPS16 homolog; member of the VPS16/VCL1 class of proteins involved in vacuolar trafficking
chr3	8261648	8270883	8262051	8269793	-	Cre03.g199350.t1.1	Cre03.g199350.t1.1		8270540,8268923,8268429,8268056,8267752,8267407,8267055,8266732,8266329,8265900,8265479,8265113,8264830,8264530,8264205,8263910,8263386,8263046,8261648	8270883,8270383,8268593,8268210,8267818,8267505,8267114,8266866,8266448,8265964,8265605,8265266,8264961,8264567,8264306,8263982,8263522,8263099,8262774	SNF2 helicase.  ChromDB CHR3423
chr3	8256424	8261645	8256604	8261178	+	ORC2	Cre03.g199400.t1.1		8256424,8257894,8258235,8258577,8259062,8259431,8259804,8260145,8260500,8260756,8261067	8257608,8257926,8258324,8258881,8259111,8259504,8259877,8260215,8260576,8260834,8261645	Homologous to eukaryotic ORC2, DNA replication control protein
chr3	8431603	8435746	8431891	8435485	-	PYR4	Cre03.g199423.t1.1		8435476,8435115,8434767,8434588,8434350,8433972,8433713,8433010,8432587,8432237,8431603	8435746,8435264,8434860,8434665,8434416,8434078,8433844,8433059,8432755,8432413,8432106	Putative dihydroorotate dehydrogenase or dihydropyrimidine dehydrogenase (PYRD), probably mitochondrial
chr3	8253408	8256303	8253845	8256059	-	MINE2	Cre03.g199450.t1.2		8256017,8255499,8255309,8254914,8254731,8254482,8254225,8253408	8256303,8255862,8255361,8255138,8254771,8254605,8254329,8253995	putative MinE homolog, chloroplast division site-determinant
chr3	8250724	8253397	8250998	8252929	+	FAP129	Cre03.g199500.t1.2		8250724,8251359,8251686	8251022,8251543,8253397	Flagellar Associated Protein; found in the flagellar proteome; in basal body proteome as BUG8 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 157384]
chr3	8435901	8438728	8436939	8438702	-	Cre03.g199535.t1.1	Cre03.g199535.t1.1		8438643,8438497,8438350,8438017,8437408,8435901	8438728,8438548,8438412,8438181,8437542,8437209	
chr3	8242939	8250323	8243538	8250031	-	Cre03.g199550.t1.2	Cre03.g199550.t1.2		8249357,8249024,8248674,8247400,8247092,8246712,8246147,8245203,8242939	8250323,8249117,8248832,8248485,8247181,8246819,8246308,8245829,8244789	
chr3	8236904	8242935	8239220	8242491	+	Cre03.g199600.t1.1	Cre03.g199600.t1.1		8236904,8239220,8239525,8239883,8240288,8240559,8240976,8241569,8241851	8236911,8239310,8239557,8240029,8240401,8240632,8241111,8241612,8242935	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family that includes Low-CO2-inducible membrane protein LCI11
chr3	8443537	8446537	8443694	8445991	+	Cre03.g199647.t1.1	Cre03.g199647.t1.1		8443537,8443961,8444411,8444663,8445078,8445354,8445592	8443705,8444230,8444532,8444840,8445207,8445443,8446537	Forms the core of the Exon Junction Complex which associates to mRNAs upstream of the splicing sites and accompanies it until the first round of translation
chr3	8229899	8232393	8230270	8232025	-	Cre03.g199650.t1.1	Cre03.g199650.t1.1		8231929,8231716,8231321,8230880,8229899	8232393,8231788,8231515,8230973,8230607	
chr3	8232574	8236855	8232874	8233885	+	Cre03.g199652.t1.1	Cre03.g199652.t1.1		8232574,8233248,8233493,8233831	8232976,8233318,8233577,8236855	
chr3	8226816	8229895	8227344	8229665	+	PGM11	Cre03.g199700.t1.1		8226816,8227296,8227916	8227178,8227770,8229895	
chr3	8221377	8226683	8222353	8226564	-	Cre03.g199750.t1.2	Cre03.g199750.t1.2		8226363,8225770,8224791,8224324,8223767,8223106,8222862,8221377	8226683,8226085,8225538,8224532,8223932,8223181,8222927,8222707	
chr3	8447035	8452546	8449563	8452232	-	Cre03.g199759.t1.1	Cre03.g199759.t1.1		8452119,8451897,8451448,8450986,8450629,8450186,8449865,8447035	8452546,8451990,8451629,8451236,8450850,8450399,8450034,8449709	Homologous to Arabidopsis oxysterol-binding protein. ts lethal mutations isolated (PMID 25336509)
chr3	8447153	8452546	8449563	8452232	-	Cre03.g199759.t2.1	Cre03.g199759.t2.1		8452119,8451897,8451448,8450986,8450629,8450186,8449865,8447153	8452546,8451990,8451629,8451236,8450850,8450399,8450034,8449709	Homologous to Arabidopsis oxysterol-binding protein. ts lethal mutations isolated (PMID 25336509)
chr3	8216108	8220752	8216998	8220611	-	HYDA1	Cre03.g199800.t1.1		8220463,8220253,8219584,8219271,8218922,8218560,8218207,8217629,8217283,8216108	8220752,8220330,8219735,8219415,8219072,8218671,8218329,8218065,8217364,8217064	Chloroplast Fe-hydrogenase (= HYDA1); corresponds to GI:18026272
chr3	8212024	8216035	8212037	8215778	+	Cre03.g199850.t1.2	Cre03.g199850.t1.2		8212024,8214000,8214505,8214978	8213810,8214104,8214805,8216035	
chr3	8453591	8459056	8454080	8458724	-	Cre03.g199871.t1.1	Cre03.g199871.t1.1		8458700,8458344,8457786,8457406,8453591	8459056,8458454,8458247,8457591,8457245	
chr3	8209544	8211970	8209746	8211058	+	EIF4E	Cre03.g199900.t1.2		8209544,8210017,8210313,8210679,8211010	8209928,8210197,8210438,8210750,8211970	putative translation initiation factor 4E (eIF4E), part of 4F complex
chr3	8205114	8209430	8205199	8208848	+	Cre03.g199950.t1.1	Cre03.g199950.t1.1		8205114,8205342,8205775,8206125,8206474,8206945,8207169,8207407,8208053	8205243,8205519,8205927,8206198,8206620,8206987,8207261,8207883,8209430	
chr3	8459217	8462697	8459726	8462551	-	Cre03.g199983.t1.1	Cre03.g199983.t1.1		8462385,8462145,8462028,8461633,8461341,8461084,8460435,8460147,8459845,8459217	8462697,8462215,8462061,8461741,8461449,8461161,8460678,8460235,8459886,8459729	
chr3	8202812	8204994	8203644	8204685	-	Cre03.g200000.t1.2	Cre03.g200000.t1.2		8204656,8204350,8203986,8202812	8204994,8204469,8204140,8203853	
chr3	8202812	8204994	8203183	8204685	-	Cre03.g200000.t2.1	Cre03.g200000.t2.1		8204656,8204350,8203986,8203529,8202812	8204994,8204469,8204140,8203853,8203183	
chr3	8200198	8202663	8200906	8202474	-	CAL1	Cre03.g200050.t1.2		8202456,8202130,8201891,8201240,8200198	8202663,8202245,8202048,8201392,8200962	
chr3	8462807	8467588	8463176	8467011	+	Cre03.g200095.t1.1	Cre03.g200095.t1.1		8462807,8464116,8464422,8464680,8465125,8465687,8466678	8463924,8464279,8464525,8464845,8465565,8466535,8467588	
chr3	8196354	8200195	8196429	8199863	+	Cre03.g200100.t1.1	Cre03.g200100.t1.1		8196354,8196882,8197653,8197987,8198471,8198778,8198965,8199446,8199833	8196562,8197474,8197763,8198196,8198575,8198821,8199154,8199583,8200195	
chr3	8193098	8196213	8193634	8195956	-	Cre03.g200150.t1.2	Cre03.g200150.t1.2		8195321,8194469,8194111,8193098	8196213,8195036,8194299,8193865	
chr3	8184080	8192783	8185684	8192409	-	Cre03.g200200.t1.1	Cre03.g200200.t1.1		8192403,8191914,8191512,8191261,8190898,8190522,8184080	8192783,8192018,8191766,8191371,8191042,8190757,8190127	
chr3	8467657	8470951	8467800	8469145	+	Cre03.g200207.t1.1	Cre03.g200207.t1.1		8467657,8468334,8468557	8468072,8468403,8470951	
chr3	8178879	8183743	8179852	8183462	-	ICL3	Cre03.g200250.t1.2		8183293,8183142,8182990,8182260,8181438,8180799,8180219,8178879	8183743,8183205,8182999,8182383,8181589,8180999,8180377,8180014	
chr3	8471041	8476516	8472547	8475931	-	Cre03.g200319.t1.1	Cre03.g200319.t1.1		8476233,8475878,8474732,8474379,8473081,8471041	8476516,8475968,8475696,8474551,8474223,8472910	
chr3	8167056	8173016	8167546	8172148	+	Cre03.g200350.t1.2	Cre03.g200350.t1.2		8167056,8167959,8168650,8168932,8169281,8169771,8170315,8170677,8170964,8171219,8171786,8172061	8167667,8168041,8168724,8169090,8169349,8169863,8170425,8170748,8170999,8171301,8171879,8173016	
chr3	8167056	8173016	8167546	8172148	+	Cre03.g200350.t2.1	Cre03.g200350.t2.1		8167056,8167433,8167959,8168650,8168932,8169281,8169771,8170315,8170677,8170964,8171219,8171786,8172061	8167241,8167667,8168041,8168724,8169090,8169349,8169863,8170425,8170748,8170999,8171301,8171879,8173016	
chr3	8173246	8178875	8173378	8178401	+	Cre03.g200351.t1.1	Cre03.g200351.t1.1		8173246,8174378,8175447,8175848,8176145,8176488,8177694,8178029	8174104,8175261,8175606,8175898,8176303,8177381,8177831,8178875	
chr3	8163580	8166735	8163962	8166515	-	Cre03.g200400.t1.2	Cre03.g200400.t1.2		8166478,8165966,8165446,8164968,8164299,8163580	8166735,8166088,8165541,8165083,8164379,8164118	
chr3	8476637	8480539	8476776	8480193	+	Cre03.g200431.t1.1	Cre03.g200431.t1.1		8476637,8477013,8477559,8477889,8478201,8478645,8478899,8479275,8479606,8479948	8476857,8477381,8477639,8477971,8478376,8478753,8479040,8479418,8479714,8480539	
chr3	8161464	8163577	8161825	8162926	+	Cre03.g200450.t1.2	Cre03.g200450.t1.2		8161464,8161723,8162188,8162608,8162891	8161568,8161903,8162461,8162658,8163577	
chr3	8161464	8163419	8161825	8162926	+	Cre03.g200450.t2.1	Cre03.g200450.t2.1		8161464,8161723,8162188,8162608,8162891	8161568,8161903,8162461,8162658,8163419	
chr3	8154736	8160456	8155420	8160303	+	Cre03.g200500.t1.1	Cre03.g200500.t1.1		8154736,8155395,8158877	8155244,8158689,8160456	
chr3	8480549	8484346	8481560	8484057	-	MCP15	Cre03.g200543.t1.1		8483808,8483485,8483035,8482387,8482010,8480549	8484346,8483596,8483159,8482853,8482130,8481719	
chr3	8150223	8154635	8150528	8154561	-	HYD3	Cre03.g200550.t1.2		8154459,8153988,8153596,8153222,8152789,8152544,8152053,8151561,8151337,8150984,8150223	8154635,8154095,8153755,8153360,8152931,8152617,8152343,8151926,8151432,8151136,8150690	Hydrogenase-like protein; similar to prelamin A binding protein. N-terminal region could be organelle targeting sequence.
chr3	8143186	8150217	8143342	8149843	+	KIN14A-1	Cre03.g200600.t1.1		8143186,8144277,8144493,8144810,8144971,8145226,8145446,8145737,8146094,8146401,8146751,8146976,8147175,8147681,8148002,8148375,8148732,8149156,8149574	8144141,8144377,8144593,8144858,8145081,8145342,8145607,8145964,8146267,8146542,8146857,8147044,8147477,8147870,8148206,8148531,8148945,8149389,8150217	kinesin-14 family, kinesin-14A subfamily
chr3	8143186	8150217	8143342	8149843	+	KIN14A-1	Cre03.g200600.t2.1		8143186,8144277,8144493,8144810,8144971,8145226,8145446,8145737,8146094,8146401,8146751,8146976,8147175,8147681,8148002,8148375,8148732,8149574	8144141,8144377,8144593,8144858,8145081,8145342,8145607,8145964,8146267,8146542,8146857,8147044,8147477,8147870,8148206,8148531,8148945,8150217	kinesin-14 family, kinesin-14A subfamily
chr3	8136928	8141092	8137138	8140935	-	CHI2	Cre03.g200650.t1.1		8140811,8140564,8140254,8139911,8139763,8139303,8138961,8138587,8138265,8137843,8137548,8137333,8136928	8141092,8140634,8140327,8140016,8139807,8139446,8139080,8138664,8138391,8137908,8137693,8137398,8137216	
chr3	8141206	8143137	8141294	8143021	+	Cre03.g200651.t1.1	Cre03.g200651.t1.1		8141206,8141706,8142164,8142442,8142634	8141503,8142057,8142318,8142508,8143137	
chr3	8484877	8497878	8485044	8497518	+	DEG4	Cre03.g200655.t1.1		8484877,8485335,8486007,8486504,8486927,8487587,8488037,8488386,8489813,8489992,8490328,8491000,8491535,8492454,8492839,8493416,8493942,8494299,8494730,8495256,8495613,8495907,8496376,8497467	8485087,8485780,8486033,8486650,8487043,8487701,8488182,8488574,8489883,8490075,8490421,8491117,8492191,8492656,8492907,8493556,8494021,8494371,8494870,8495326,8495685,8496100,8497300,8497878	v5.5 model is probably a fusion of two genes
chr3	8484877	8497878	8485044	8497518	+	DEG4	Cre03.g200655.t2.1		8484877,8485335,8486007,8486504,8486927,8487587,8488037,8488386,8489813,8489992,8490328,8491000,8491535,8492454,8492839,8493416,8493942,8495613,8495907,8496376,8497467	8485087,8485780,8486033,8486650,8487043,8487701,8488182,8488574,8489883,8490075,8490421,8491117,8492191,8492656,8492907,8493556,8494021,8495685,8496100,8497300,8497878	v5.5 model is probably a fusion of two genes
chr3	8134520	8136782	8135103	8136637	-	FAP166	Cre03.g200700.t1.2		8136454,8136202,8135962,8135502,8134520	8136782,8136262,8136071,8135663,8135232	Flagellar Associated Protein, found in the flagellar proteome
chr3	8124216	8134517	8124458	8133599	+	Cre03.g200750.t1.1	Cre03.g200750.t1.1		8124216,8124770,8124940,8125111,8125559,8125952,8126196,8127539,8128396,8128949,8129184,8129480,8129839,8130199,8130461,8131032,8131221,8131403,8131991,8132218,8132582	8124563,8124847,8124975,8125238,8125717,8126051,8127244,8128204,8128783,8129014,8129255,8129530,8129941,8130316,8130923,8131100,8131283,8131850,8132081,8132374,8134517	DNA methylase, C-5 cytosine-specific.  ChromoDB DMT347
chr3	8124216	8134517	8124458	8133599	+	Cre03.g200750.t2.1	Cre03.g200750.t2.1		8124216,8124770,8124940,8125114,8125559,8125952,8126196,8127539,8128396,8128949,8129184,8129480,8129839,8130199,8130461,8131032,8131221,8131403,8131991,8132218,8132582	8124563,8124847,8124975,8125238,8125717,8126051,8127244,8128204,8128783,8129014,8129255,8129530,8129941,8130316,8130923,8131100,8131283,8131850,8132081,8132374,8134517	DNA methylase, C-5 cytosine-specific.  ChromoDB DMT347
chr3	8498563	8504388	8499493	8503606	-	CSR9	Cre03.g200767.t1.1		8503564,8503039,8502830,8502508,8502286,8501919,8501662,8501373,8501085,8500520,8500029,8498563	8504388,8503058,8502878,8502567,8502321,8502028,8501716,8501462,8501103,8500852,8500264,8499763	
chr3	8121610	8124065	8123430	8123707	-	Cre03.g200787.t1.2	Cre03.g200787.t1.2		8123908,8121610	8124065,8123743	
chr3	8106556	8121608	8107236	8120758	+	CYG61	Cre03.g200800.t1.1		8106556,8106862,8107183,8107355,8107554,8107940,8108243,8108549,8108767,8109627,8110040,8113161,8113605,8114068,8114436,8114648,8114901,8115315,8115601,8115974,8116368,8116686,8117033,8117601,8118640,8119003,8119188,8119357,8119664,8119928,8120138,8120335,8120660	8106755,8106898,8107241,8107419,8107738,8108023,8108397,8108601,8109416,8109790,8112992,8113441,8113881,8114211,8114484,8114736,8115055,8115387,8115764,8116086,8116494,8116889,8117330,8118370,8118740,8119053,8119213,8119476,8119748,8119944,8120170,8120437,8121608	
chr3	8101966	8106267	8102488	8105131	+	Cre03.g200850.t1.2	Cre03.g200850.t1.2		8101966,8102465,8103000,8103270,8103497,8104456,8104741,8105052	8102367,8102872,8103081,8103363,8104322,8104580,8104884,8106267	
chr3	8504742	8510148	8505788	8510027	-	CSR10	Cre03.g200879.t1.1		8509817,8509310,8508776,8508496,8508038,8507685,8507354,8506915,8506466,8504742	8510148,8509329,8508881,8508531,8508136,8507774,8507372,8507130,8506692,8506142	
chr3	8504742	8510088	8505788	8509840	-	CSR10	Cre03.g200879.t2.1		8509817,8509310,8509054,8508776,8508496,8508038,8507685,8507354,8506915,8506466,8504742	8510088,8509329,8509087,8508881,8508531,8508136,8507774,8507372,8507130,8506692,8506142	
chr3	8095826	8101657	8096030	8100598	+	Cre03.g200900.t1.1	Cre03.g200900.t1.1		8095826,8096201,8096349,8096547,8096741,8097501,8098966	8096098,8096257,8096438,8096595,8097334,8098790,8101657	
chr3	8093957	8095662	8094850	8095543	-	FAP273	Cre03.g200950.t1.2		8095429,8095161,8093957	8095662,8095308,8095008	Flagellar Associated Protein, found in the flagellar proteome
chr3	8510210	8513448	8510418	8513322	-	Cre03.g200991.t1.1	Cre03.g200991.t1.1		8512722,8512338,8511776,8511413,8511069,8510210	8513448,8512433,8511913,8511508,8511128,8510823	
chr3	8086400	8093735	8087003	8093580	-	Cre03.g201000.t1.1	Cre03.g201000.t1.1		8093490,8093306,8093038,8092656,8092429,8091901,8091606,8091298,8089475,8089208,8088247,8087654,8087329,8086400	8093735,8093404,8093103,8092797,8092505,8092240,8091763,8091372,8091114,8089299,8088962,8087932,8087412,8087081	
chr3	8084586	8086391	8084830	8085734	+	ZNJ2	Cre03.g201050.t1.2		8084586,8085110,8085321,8085665	8084983,8085157,8085521,8086391	contains a Zn-finger domain with CXXCXGXG motif, also found in DnaJ co-chaperones; possibly directed to thylakoid lumen; orthologous to thylakoid lumenal P17.1 (At3g44020)
chr3	8073439	8084537	8073636	8084192	+	FHL1	Cre03.g201100.t1.2		8073439,8073982,8074326,8074930,8075267,8075825,8076180,8076562,8076989,8077418,8077711,8077983,8078327,8078700,8079090,8079483,8079754,8081260,8081635,8081934,8082244,8082499,8082935,8083389,8083763,8084101	8073816,8074053,8074635,8075003,8075445,8075954,8076280,8076674,8077167,8077561,8077816,8078149,8078440,8078795,8079271,8079604,8079827,8081392,8081690,8082049,8082374,8082623,8083198,8083564,8083864,8084537	Similar to FtsH protease, but lacks peptidase HEXXH motif, like At FtsHi; may function with Tic214 (Ycf2) in the TIC translocon
chr3	8513569	8519360	8513720	8518558	+	RAA7	Cre03.g201103.t1.1		8513569,8514550,8515237,8516071,8516526,8517011,8517466	8514399,8515019,8515911,8516299,8516827,8517262,8519360	Necessary for trans-splicing of psaA mRNA; no similarity to known proteins
chr3	8067544	8073335	8068369	8073186	-	Cre03.g201150.t1.1	Cre03.g201150.t1.1		8073032,8072585,8072238,8069115,8068627,8067544	8073335,8072702,8072354,8071881,8068951,8068467	
chr3	6970805	6973306	6971244	6973103	+	Cre03.g201163.t1.1	Cre03.g201163.t1.1		6970805,6971597,6972420,6972834	6971257,6972133,6972557,6973306	
chr3	8064716	8067537	8064861	8067426	+	FAP283	Cre03.g201200.t1.1		8064716,8065155,8065308,8065630,8066603,8067344	8065035,8065226,8065447,8066440,8067114,8067537	Hypothetical Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr3	8519479	8520990	8519645	8520733	+	Cre03.g201215.t1.1	Cre03.g201215.t1.1		8519479,8520103,8520604	8519863,8520424,8520990	
chr3	8062640	8064595	8062678	8064445	-	Cre03.g201250.t1.2	Cre03.g201250.t1.2		8064157,8063989,8063699,8062640	8064595,8064057,8063869,8063362	null-allele mutant was isolated (PMID 29743196)
chr3	8057796	8062627	8058020	8062019	+	SSA10	Cre03.g201300.t1.1		8057796,8058429,8058764,8059064,8059454,8059670,8060011,8060291,8060726,8061112,8061537,8061706	8058216,8058577,8058829,8059243,8059510,8059877,8060126,8060515,8060929,8061261,8061580,8062627	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr3	8054396	8057677	8054477	8057611	+	Cre03.g201301.t1.2	Cre03.g201301.t1.2		8054396,8055045,8055260,8057227	8054921,8055140,8057041,8057677	
chr3	8520999	8524248	8521467	8524114	-	Cre03.g201327.t1.1	Cre03.g201327.t1.1		8524027,8523697,8523297,8522881,8522635,8522378,8522020,8521754,8520999	8524248,8523804,8523449,8522991,8522724,8522444,8522144,8521855,8521533	Aldo/keto reductase; family includes a number of related monomeric NADPH-dependent oxidoreductases
chr3	8520999	8524248	8521467	8524114	-	Cre03.g201327.t2.1	Cre03.g201327.t2.1		8524027,8523697,8523297,8522881,8522635,8522378,8522044,8521754,8520999	8524248,8523804,8523449,8522991,8522724,8522444,8522144,8521855,8521533	Aldo/keto reductase; family includes a number of related monomeric NADPH-dependent oxidoreductases
chr3	8050446	8054347	8050533	8054076	+	Cre03.g201332.t1.2	Cre03.g201332.t1.2		8050446,8051133,8051541,8051802,8052204,8052469,8052932,8053617	8050981,8051329,8051669,8052040,8052331,8052748,8053169,8054347	
chr3	8047236	8050397	8047941	8049818	+	Cre03.g201350.t1.1	Cre03.g201350.t1.1		8047236,8047462,8047741,8047899,8048360,8048549,8048890,8049152,8049487	8047351,8047501,8047805,8048151,8048416,8048662,8048981,8049316,8050397	
chr3	8037450	8047115	8038445	8047030	-	PPP16	Cre03.g201400.t1.2		8046929,8046506,8046195,8045217,8045013,8044741,8044346,8043965,8043713,8043437,8043038,8042354,8041815,8040871,8039070,8037450	8047115,8046591,8046255,8046078,8045052,8044829,8044534,8044051,8043787,8043500,8043160,8042747,8042033,8040987,8040709,8038445	
chr3	8034496	8038669	8035737	8036411	+	Cre03.g201417.t1.2	Cre03.g201417.t1.2		8034496,8034900,8035306,8035620,8036031,8036389	8034774,8035028,8035341,8035772,8036162,8038669	
chr3	8524419	8528680	8524477	8528201	+	Cre03.g201439.t1.1	Cre03.g201439.t1.1		8524419,8524838,8525189,8525518,8525770,8526147,8526532,8526935,8527353,8527831	8524667,8524896,8525275,8525583,8525821,8526203,8526677,8527042,8527450,8528680	
chr3	8017226	8034447	8017356	8032860	+	Cre03.g201450.t1.1	Cre03.g201450.t1.1		8017226,8017847,8018165,8018530,8018772,8019295,8019951,8020214,8020952,8021299,8021479,8021671,8021849,8024942,8025443,8028525,8028842,8029236,8031744	8017493,8017979,8018404,8018641,8019094,8019831,8020046,8020801,8021173,8021318,8021582,8021747,8024788,8025241,8028376,8028683,8029055,8031631,8034447	
chr3	8014881	8017122	8015734	8016989	-	Cre03.g201500.t1.2	Cre03.g201500.t1.2		8016863,8016633,8016389,8016028,8014881	8017122,8016676,8016440,8016190,8015799	
chr3	8008220	8014495	8008883	8013729	-	MMP20	Cre03.g201550.t1.2		8014068,8013722,8013272,8012853,8012459,8012201,8010758,8010416,8010064,8009706,8009225,8008220	8014495,8013835,8013520,8013118,8012674,8012300,8010980,8010513,8010254,8009906,8009514,8009085	Matrix metalloproteinase belonging to the M11 peptidase family
chr3	8528853	8534968	8530043	8534607	-	MMP8	Cre03.g201552.t1.1		8534540,8534402,8534028,8533766,8533212,8532932,8532417,8531892,8531448,8531031,8530320,8528853	8534968,8534452,8534057,8533896,8533459,8533006,8532645,8532014,8531559,8531167,8530848,8530150	Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein
chr3	8528853	8535028	8530043	8534607	-	MMP8	Cre03.g201552.t2.1		8534540,8534402,8534028,8533766,8533212,8532932,8532417,8531892,8531448,8531031,8530320,8528853	8535028,8534449,8534057,8533896,8533459,8533006,8532645,8532014,8531559,8531167,8530848,8530150	Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein
chr3	8005276	8008197	8005459	8007641	+	Cre03.g201600.t1.1	Cre03.g201600.t1.1		8005276,8005695,8006767,8007518	8005487,8006530,8007366,8008197	
chr3	8000710	8005085	8001982	8004407	-	Cre03.g201650.t1.1	Cre03.g201650.t1.1		8000710	8005085	
chr3	8535093	8540648	8535963	8540496	-	GIT2	Cre03.g201664.t1.1		8540146,8538945,8538628,8538212,8537826,8537533,8535093	8540648,8539890,8538723,8538388,8538028,8537596,8537133	Forms a complex with Gpi16 and Gpi8 components.  GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesised proteins.
chr3	7996476	8000707	7996634	8000585	+	Cre03.g201700.t1.1	Cre03.g201700.t1.1		7996476,7996813,7996986,7997302,7997632,7997849	7996637,7996890,7997145,7997528,7997697,8000707	
chr3	7993748	7996343	7994283	7996256	-	Cre03.g201750.t1.2	Cre03.g201750.t1.2		7995863,7995548,7995013,7994621,7993748	7996343,7995646,7995153,7994704,7994340	
chr3	8540769	8544802	8541014	8544205	+	Cre03.g201776.t1.1	Cre03.g201776.t1.1		8540769,8541769,8542195,8542844,8543491,8544088	8541317,8541835,8542244,8542927,8543670,8544802	
chr3	7977630	7986785	7978371	7986678	-	Cre03.g201850.t1.1	Cre03.g201850.t1.1		7986549,7985412,7985093,7984504,7984315,7983988,7983771,7983574,7983360,7983040,7982712,7982383,7982106,7981637,7981501,7980832,7980518,7980162,7979804,7979444,7979001,7978817,7977630	7986785,7986395,7985233,7984858,7984382,7984112,7983822,7983633,7983443,7983135,7982843,7982493,7982174,7981922,7981529,7981257,7980565,7980348,7979913,7979551,7979201,7978891,7978599	Putative SNF-related DNA/RNA helicase, identified as ChromDB CHR3412
chr3	7987009	7993695	7987372	7993617	-	Cre03.g201851.t1.1	Cre03.g201851.t1.1		7993380,7989679,7987009	7993695,7993228,7989615	
chr3	8544813	8547188	8545632	8546896	-	Cre03.g201888.t1.1	Cre03.g201888.t1.1		8546407,8544813	8547188,8545632	
chr3	7972610	7977575	7973025	7977558	-	RSP1	Cre03.g201900.t1.1		7977511,7977363,7976957,7976705,7976019,7975589,7975226,7974944,7974489,7973366,7972610	7977575,7977430,7977217,7976802,7976183,7975786,7975336,7975090,7974734,7974298,7973196	Flagellar protein, a subunit in the radial spoke head; C-terminus contains repeats of MORN motifs found in several membrane associated proteins [PMID: 16507594; GI:83284723]
chr3	7968186	7972617	7968818	7971785	+	Cre03.g201950.t1.2	Cre03.g201950.t1.2		7968186,7968748,7969305,7969547,7969899,7970174,7970435,7970972	7968572,7969123,7969443,7969754,7969991,7970255,7970768,7972617	
chr3	7957626	7967610	7958060	7966970	+	KIN4-2	Cre03.g202000.t1.2		7957626,7958285,7958659,7958955,7959416,7959700,7959923,7960142,7960546,7961022,7961238,7961512,7961871,7962108,7962342,7962698,7963109,7963450,7963766,7964152,7964617,7965446	7958204,7958477,7958771,7959258,7959550,7959827,7960011,7960430,7960868,7961113,7961367,7961704,7961969,7962215,7962545,7962970,7963303,7963625,7963964,7964457,7965285,7967610	kinesin-4 family
chr3	8549233	8559658	8550308	8559327	-	Cre03.g202001.t1.1	Cre03.g202001.t1.1		8559459,8552124,8551723,8550709,8549233	8559658,8559336,8551911,8551356,8550533	
chr3	7955806	7957557	7956799	7957088	+	Cre03.g202050.t1.2	Cre03.g202050.t1.2		7955806,7956752	7956226,7957557	
chr3	7949776	7955675	7949886	7955567	-	OPR18	Cre03.g202100.t1.1		7955489,7955281,7953961,7953566,7953271,7952958,7952530,7952116,7951542,7949776	7955675,7955424,7955130,7953671,7953422,7953077,7952697,7952376,7951949,7951308	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr3	8559794	8564260	8559935	8563530	+	Cre03.g202113.t1.1	Cre03.g202113.t1.1		8559794,8560518,8561087,8561479,8561968,8562349,8562985,8563346	8560051,8560572,8561140,8561734,8562173,8562444,8563136,8564260	
chr3	7940720	7949645	7941598	7949436	-	DMC2	Cre03.g202150.t1.1		7949382,7949044,7948862,7948577,7948323,7948017,7946954,7946532,7946352,7946088,7945929,7945690,7945424,7945130,7944881,7944704,7944539,7944145,7943969,7943769,7943021,7942682,7942195,7940720	7949645,7949124,7948888,7948725,7948454,7948113,7947863,7946828,7946397,7946256,7945964,7945752,7945498,7945204,7945047,7944761,7944615,7944394,7944028,7943819,7943682,7942877,7942533,7941958	DNA methylase, C-5 cytosine-specific, homologous to the chromomethylase 2 family but lacks chromo-domain.  ChromoDB DMT346
chr3	7931816	7939307	7932189	7937904	+	Cre03.g202200.t1.1	Cre03.g202200.t1.1		7931816,7933414,7933692,7934016	7933266,7933533,7933847,7939307	
chr3	7923656	7931617	7923900	7931567	+	Cre03.g202202.t1.2	Cre03.g202202.t1.2		7923656,7924417,7924829,7925097,7925583,7925925,7926463,7927331,7927767,7928209,7928572,7928755,7928992,7929326,7930352	7924070,7924528,7924870,7925423,7925639,7926335,7927143,7927521,7928007,7928418,7928591,7928858,7929068,7930186,7931617	
chr3	7923656	7931617	7923900	7931567	+	Cre03.g202202.t2.1	Cre03.g202202.t2.1		7923656,7924417,7924829,7925097,7925583,7925925,7926463,7927331,7927767,7928209,7928572,7928755,7928992,7929326,7930352	7924070,7924528,7924870,7925423,7925639,7926335,7927143,7927521,7927980,7928418,7928591,7928858,7929068,7930186,7931617	
chr3	8564268	8565178	8564286	8564922	-	Cre03.g202225.t1.1	Cre03.g202225.t1.1		8564690,8564268	8565178,8564603	
chr3	7920176	7923560	7920261	7922855	+	Cre03.g202250.t1.2	Cre03.g202250.t1.2		7920176,7920420,7920543,7920845,7921033,7921438,7922095,7922390,7922798	7920327,7920478,7920667,7920890,7921325,7921877,7922254,7922610,7923560	null-allele mutant was isolated (PMID 29743196)
chr3	7913726	7920047	7913882	7919629	+	Cre03.g202300.t1.1	Cre03.g202300.t1.1		7913726,7914087,7915184,7915613,7915879,7916159,7916445,7917221,7917526,7919146	7913967,7915022,7915463,7915708,7915977,7916300,7917086,7917355,7918968,7920047	
chr3	8565783	8568918	8566509	8568830	-	MOT28	Cre03.g202337.t1.1		8568700,8567969,8567404,8565783	8568918,8568512,8567554,8566680	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr3	7912130	7913625	7912354	7913322	-	Cre03.g202339.t1.2	Cre03.g202339.t1.2		7913601,7913271,7912887,7912130	7913625,7913443,7913042,7912633	
chr3	7896110	7911795	7897148	7910967	-	Cre03.g202350.t1.1	Cre03.g202350.t1.1		7911169,7910953,7909870,7909420,7908916,7908593,7908280,7907988,7903815,7903513,7902981,7902648,7902286,7901904,7901452,7901090,7900380,7898414,7896110	7911795,7911052,7910760,7909626,7909120,7908783,7908385,7908130,7907816,7903633,7903151,7902788,7902354,7902011,7901629,7901270,7900847,7900141,7898151	
chr3	7891389	7895329	7892413	7895076	-	MCP10	Cre03.g202400.t1.2		7894945,7894775,7894465,7894072,7893615,7893277,7892882,7891389	7895329,7894862,7894586,7894276,7893732,7893392,7893004,7892521	Related to mitochondrial carrier proteins; possibly calcium binding
chr3	8569049	8581220	8569583	8581193	+	Cre03.g202449.t1.1	Cre03.g202449.t1.1		8569049,8570584,8571771,8572433,8572908,8573415,8574047,8574792,8575633,8576629,8577022,8577770,8578932,8579300,8579884,8580236	8570175,8570842,8571867,8572574,8572999,8573558,8574607,8575372,8576253,8576731,8577489,8578495,8579012,8579644,8580018,8581220	
chr3	7885873	7891159	7886498	7890871	-	Cre03.g202450.t1.1	Cre03.g202450.t1.1		7889920,7888592,7887823,7887337,7885873	7891159,7889740,7888301,7887679,7887149	
chr3	7882000	7885871	7882235	7884910	+	Cre03.g202500.t1.2	Cre03.g202500.t1.2		7882000,7882321,7882710,7882968,7883286,7883623,7884389,7884715	7882248,7882516,7882790,7883087,7883464,7884141,7884585,7885871	
chr3	7874467	7881889	7874959	7881780	-	ELG11	Cre03.g202550.t1.1		7881619,7881264,7881094,7880912,7880679,7880226,7879982,7879702,7879437,7878988,7878654,7878474,7878321,7878118,7877846,7877466,7877121,7876768,7876291,7876055,7875583,7875300,7874467	7881889,7881325,7881150,7880937,7880756,7880402,7880032,7879771,7879564,7879145,7878710,7878525,7878366,7878172,7877928,7877548,7877180,7876866,7876389,7876164,7875676,7875421,7875095	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr3	8581223	8587718	8582731	8587011	-	Cre03.g202561.t1.1	Cre03.g202561.t1.1		8587462,8586959,8586469,8585182,8584964,8584555,8581223	8587718,8587042,8586728,8586192,8585022,8584822,8584306	
chr3	8581223	8587718	8582731	8587011	-	Cre03.g202561.t2.1	Cre03.g202561.t2.1		8587184,8586959,8586469,8585182,8584964,8584555,8581223	8587718,8587042,8586728,8586192,8585022,8584822,8584306	
chr3	7868674	7874419	7870533	7873927	-	Cre03.g202600.t1.2	Cre03.g202600.t1.2		7873918,7873722,7873322,7872916,7872624,7872304,7871822,7868674	7874419,7873799,7873468,7873080,7872674,7872378,7871938,7871640	
chr3	7864460	7866326	7864601	7865751	+	Cre03.g202650.t1.2	Cre03.g202650.t1.2		7864460,7864931	7864633,7866326	
chr3	8588303	8593318	8591220	8593214	-	CSC2	Cre03.g202673.t1.1		8592893,8592705,8592169,8591912,8588303	8593318,8592770,8592478,8592064,8591507	function unknown; homologs in Gonium, not Volvox
chr3	7858224	7862439	7860052	7861952	-	Cre03.g202700.t1.1	Cre03.g202700.t1.1		7862244,7858224	7862439,7862022	
chr3	7850240	7858221	7850431	7857784	+	Cre03.g202750.t1.1	Cre03.g202750.t1.1		7850240,7852593,7853077,7854764,7855198,7856817,7857217	7852417,7852868,7854564,7854898,7856633,7856934,7858221	
chr3	8593492	8595478	8594366	8594880	-	Cre03.g202785.t1.1	Cre03.g202785.t1.1		8594502,8593492	8595478,8594402	
chr3	7834760	7845128	7834814	7844650	+	Cre03.g202850.t1.1	Cre03.g202850.t1.1		7834760,7835424,7836188,7836822,7837753,7838167,7840336,7840622,7841369,7842776,7843367,7843714	7835213,7835812,7836545,7837184,7837906,7840121,7840464,7840725,7842575,7842906,7843484,7845128	null-allele mutant was isolated (PMID 29743196)
chr3	7845190	7850109	7845493	7849586	+	Cre03.g202851.t1.1	Cre03.g202851.t1.1		7845190	7850109	
chr3	7825220	7834705	7825317	7834400	+	Cre03.g202875.t1.2	Cre03.g202875.t1.2		7825220,7826782,7827274,7827592,7827883,7828275,7830562,7830885,7833178,7833815	7826558,7827088,7827387,7827706,7828040,7830251,7830698,7832960,7833298,7834705	
chr3	8595533	8599416	8597464	8599301	-	Cre03.g202897.t1.1	Cre03.g202897.t1.1		8599244,8599093,8598905,8598482,8598184,8595533	8599416,8599149,8598961,8598709,8598339,8598016	
chr3	7816200	7825161	7816360	7824348	+	Cre03.g202900.t1.1	Cre03.g202900.t1.1		7816200,7817607,7818189,7818672,7821001,7821607,7823339	7817322,7817997,7818395,7820828,7821347,7823088,7825161	
chr3	7810670	7816141	7810929	7814907	+	TRX14	Cre03.g202950.t1.1		7810670,7811336,7811659,7812020,7812359,7812904,7813535,7814020,7814474,7814840	7811123,7811414,7811751,7812107,7812435,7813047,7813675,7814115,7814568,7816141	
chr3	7803670	7810478	7803840	7810119	+	Cre03.g203000.t1.1	Cre03.g203000.t1.1		7803670,7806365,7806796,7808553,7809312,7809899	7806033,7806493,7808361,7808789,7809691,7810478	
chr3	8599463	8602748	8599681	8602672	-	Cre03.g203009.t1.1	Cre03.g203009.t1.1		8601976,8600012,8599463	8602748,8601841,8599759	
chr3	7797290	7802951	7797412	7802184	+	Cre03.g203050.t1.1	Cre03.g203050.t1.1		7797290,7799350,7799617,7800949,7801353	7798942,7799469,7800716,7801066,7802951	
chr3	7793930	7797230	7794006	7796847	+	Cre03.g203100.t1.2	Cre03.g203100.t1.2		7793930,7795195	7794958,7797230	
chr3	8603896	8607528	8605277	8607326	-	Cre03.g203121.t1.1	Cre03.g203121.t1.1		8607075,8606522,8606091,8605780,8603896	8607528,8606789,8606252,8605937,8605584	
chr3	7787730	7793881	7788064	7793519	+	Cre03.g203150.t1.1	Cre03.g203150.t1.1		7787730,7788867,7789953,7790518,7792095,7792496	7788742,7789658,7790144,7791719,7792212,7793881	
chr3	7780730	7787472	7781038	7786363	+	Cre03.g203200.t1.1	Cre03.g203200.t1.1		7780730,7782855,7783449,7784918,7785290,7786251	7782550,7783154,7784710,7785035,7785915,7787472	
chr3	8608136	8611118	8608801	8610697	-	Cre03.g203233.t1.1	Cre03.g203233.t1.1		8610608,8608136	8611118,8610392	
chr3	7774560	7780601	7774650	7779308	+	Cre03.g203250.t1.2	Cre03.g203250.t1.2		7774560,7775968,7776300,7777700,7778052,7779196	7775730,7776153,7777558,7777817,7778785,7780601	
chr3	7768810	7774250	7769035	7773955	+	Cre03.g203300.t1.1	Cre03.g203300.t1.1		7768810,7770752,7771133,7772565,7772956	7770529,7770922,7772397,7772682,7774250	
chr3	8611469	8626150	8611949	8625828	+	Cre03.g203345.t1.1	Cre03.g203345.t1.1		8611469,8611889,8612237,8616176,8616441,8617054,8623618,8623892,8625525	8611751,8612081,8615702,8616306,8616833,8623405,8623736,8625316,8626150	
chr3	7762900	7768759	7763226	7768088	+	Cre03.g203350.t1.1	Cre03.g203350.t1.1		7762900,7764886,7765196,7766672,7767067,7767407	7764657,7765029,7766427,7766783,7767144,7768759	
chr3	7756170	7762831	7756401	7762478	+	Cre03.g203351.t1.2	Cre03.g203351.t1.2		7756170,7759119,7759672,7761202,7761539	7758834,7759232,7760966,7761388,7762831	
chr3	7727416	7728040	7727452	7727997	-	RPS21	Cre03.g203450.t1.2		7727947,7727728,7727416	7728040,7727860,7727518	Cytosolic 40S small ribosomal subunit protein S21
chr3	7737550	7755911	7737868	7754441	+	CYA5	Cre03.g203451.t1.1		7737550,7738211,7738543,7738967,7739306,7739859,7740430,7740850,7741206,7741560,7742214,7742603,7742971,7743189,7743553,7745764,7746125,7746570,7746918,7748198,7751831,7754232	7737999,7738334,7738837,7739067,7739705,7740274,7740654,7741090,7741365,7742014,7742286,7742723,7743050,7743358,7745625,7745961,7746341,7746756,7747991,7751614,7754156,7755911	possible guanylate or adenylate cyclase
chr3	8626229	8630620	8626429	8629709	+	Cre03.g203457.t1.1	Cre03.g203457.t1.1		8626229,8626593,8626850,8628732,8629266,8629586	8626474,8626676,8627155,8628845,8629352,8630620	
chr3	7717150	7724751	7717892	7722496	+	Cre03.g203500.t1.2	Cre03.g203500.t1.2		7717150,7717831,7718198,7718465,7718821,7719150,7719472,7719714,7721780,7722272	7717324,7717981,7718314,7718497,7718987,7719235,7719561,7721555,7722020,7724751	
chr3	7709607	7717091	7709725	7716165	+	Cre03.g203550.t1.1	Cre03.g203550.t1.1		7709607,7710003,7710348,7710797,7711014,7711224,7711864,7712295,7712765,7712987,7713440,7714237,7714455,7714800,7715156,7715655,7715984	7709856,7710111,7710464,7710831,7711082,7711316,7711967,7712383,7712812,7713065,7713515,7714307,7714513,7714895,7715298,7715750,7717091	
chr3	7709607	7717091	7709725	7716165	+	Cre03.g203550.t2.1	Cre03.g203550.t2.1		7709607,7710003,7710348,7710797,7711014,7711224,7711864,7712295,7712765,7712987,7713440,7713502,7714455,7714800,7715156,7715655,7715984	7709856,7710111,7710464,7710831,7711082,7711316,7711967,7712383,7712812,7713065,7713458,7713515,7714513,7714895,7715298,7715750,7717091	
chr3	7709607	7717091	7709725	7716165	+	Cre03.g203550.t3.1	Cre03.g203550.t3.1		7709607,7710003,7710348,7710797,7711014,7711224,7711864,7712295,7712765,7712987,7714455,7714800,7715156,7715655,7715984	7709856,7710111,7710464,7710831,7711082,7711316,7711967,7712383,7712812,7713065,7714513,7714895,7715298,7715750,7717091	
chr3	7712765	7717420	7714294	7716165	+	Cre03.g203550.t4.1	Cre03.g203550.t4.1		7712765,7712987,7713440,7714276,7714455,7714800,7715156,7715655,7715984	7712812,7713065,7713515,7714307,7714513,7714895,7715298,7715750,7717420	
chr3	8630709	8634420	8630818	8633315	+	Cre03.g203569.t1.1	Cre03.g203569.t1.1		8630709,8631265,8631623,8632176,8632594,8633034	8631084,8631313,8631702,8632264,8632725,8634420	
chr3	7705194	7709069	7706319	7708737	-	GDP6	Cre03.g203600.t1.2		7708696,7708383,7707498,7706813,7705194	7709069,7708518,7707995,7707295,7706526	
chr3	6973625	6976126	6974257	6975822	+	Cre03.g203625.t1.1	Cre03.g203625.t1.1		6973625,6974247,6975067	6973952,6974948,6976126	
chr3	7701850	7705111	7702617	7703942	+	Cre03.g203650.t1.2	Cre03.g203650.t1.2		7701850,7702776,7703083	7702667,7702844,7705111	
chr3	8677471	8680952	8677596	8680777	-	Cre03.g203681.t1.1	Cre03.g203681.t1.1		8680726,8680327,8679859,8679306,8678437,8678015,8677471	8680952,8680446,8679889,8679495,8678483,8678083,8677596	
chr3	7692080	7701333	7692126	7700118	+	DEGO	Cre03.g203700.t1.1		7692080,7692323,7692712,7693061,7693496,7693844,7694710,7694966,7695499,7696231,7696752,7697074,7697463	7692227,7692403,7692790,7693262,7693545,7694515,7694816,7695276,7696036,7696411,7696826,7697226,7701333	
chr3	7686710	7692031	7686831	7691665	+	DEGO1	Cre03.g203730.t1.2		7686710,7687041,7687530,7688015,7688462,7689048,7689604,7689973,7690370,7690784,7691156	7686850,7687384,7687687,7688102,7688793,7689380,7689695,7690142,7690627,7690850,7692031	Similar to serine proteases/chaperones of the trypsin-like DegP family (HtrA) (protease Do) but lacks all three catalytic residues: H>A, D>E, S>L (confirmed in Volvox ortholog); contains patch of basic residues that could mediate association with DEGO2; described in Chlamydomonas sourcebook, vol. II,p701
chr3	7678954	7686609	7679258	7686401	-	COG3	Cre03.g203750.t1.2		7686335,7686140,7685294,7684876,7684276,7683622,7683164,7682461,7681973,7681035,7680766,7680360,7680109,7679595,7678954	7686609,7686238,7685617,7685101,7684433,7683871,7683354,7682706,7682125,7681681,7680901,7680431,7680180,7679789,7679339	Hypothetical Conserved Protein. Similar to SEC34/COG3, component of oligomeric golgi complex 3, involved in vesicle tethering and other Golgi functions
chr3	8681063	8687654	8681410	8687132	+	Cre03.g203793.t1.1	Cre03.g203793.t1.1		8681063,8682302,8682739,8683212,8683759,8684581,8685172,8685654,8686027,8686426,8686814,8687117	8682013,8682400,8682960,8683434,8684029,8684761,8685302,8685735,8686143,8686461,8686924,8687654	
chr3	7677290	7678951	7677334	7678313	+	Cre03.g203800.t1.2	Cre03.g203800.t1.2		7677290,7677475,7677905,7678259	7677376,7677648,7678009,7678951	
chr3	7672994	7677195	7673844	7677178	-	ATS1	Cre03.g203850.t1.2		7676944,7676066,7675287,7674266,7672994	7677195,7676770,7675490,7674450,7673905	ATP-sulfurylase; catalyses the synthesis of adenosine-phosphosulphate (APS) from ATP and inorganic sulphate; Genbank entry U57088
chr3	7669684	7672209	7670111	7671449	-	Cre03.g203900.t1.2	Cre03.g203900.t1.2		7671399,7671223,7669684	7672209,7671291,7670985	
chr3	7669684	7671189	7670111	7671125	-	Cre03.g203900.t2.1	Cre03.g203900.t2.1		7671099,7669684	7671189,7670985	
chr3	8687657	8688772	8688248	8688420	-	Cre03.g203905.t1.1	Cre03.g203905.t1.1		8688506,8687657	8688772,8688434	
chr3	7667140	7669663	7667195	7669366	+	Cre03.g203950.t1.1	Cre03.g203950.t1.1		7667140,7667574,7668037,7668482,7668841	7667424,7667727,7668346,7668637,7669663	
chr3	7665304	7667009	7666262	7666873	-	Cre03.g204000.t1.2	Cre03.g204000.t1.2		7666832,7666712,7666417,7665304	7667009,7666748,7666602,7666280	
chr3	8689113	8693194	8689214	8691994	+	Cre03.g204017.t1.1	Cre03.g204017.t1.1		8689113,8689821,8690138,8690635,8691372,8691838	8689685,8689852,8690448,8691167,8691629,8693194	
chr3	7657450	7665300	7657605	7664084	+	ELG6	Cre03.g204050.t1.1		7657450,7657906,7658177,7658587,7659000,7659474,7659904,7660282,7660682,7660962,7661293,7661746,7662003,7662228,7662600,7663042,7663437,7663873	7657749,7657983,7658340,7658687,7659139,7659536,7660049,7660494,7660767,7661105,7661491,7661781,7662059,7662246,7662752,7663168,7663659,7665300	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr3	7649880	7657402	7650062	7657028	+	ELG5	Cre03.g204100.t1.1		7649880,7650275,7650641,7651106,7651409,7651765,7652019,7652315,7652801,7653166,7653377,7653622,7653896,7654394,7654712,7654860,7655085,7655204,7655554,7655985,7656305,7656727	7650098,7650457,7650804,7651215,7651560,7651885,7652100,7652527,7652945,7653217,7653415,7653688,7654027,7654505,7654735,7654914,7655108,7655253,7655680,7656082,7656429,7657402	putative terminal arabinosyl transferase on HRGP,  GT47 family; null-allele mutant was isolated (PMID 29743196)
chr3	8693197	8695942	8693390	8695762	-	Cre03.g204129.t1.1	Cre03.g204129.t1.1		8695577,8695322,8694808,8694471,8694140,8693751,8693197	8695942,8695397,8694884,8694559,8694244,8693871,8693460	
chr3	7643613	7649737	7644127	7649533	-	IFT80	Cre03.g204150.t1.2		7649386,7649165,7648964,7648546,7648103,7647527,7646948,7646633,7646165,7645726,7644877,7644407,7643613	7649737,7649270,7649056,7648832,7648255,7647664,7647050,7646745,7646368,7645953,7645332,7644586,7644217	Component of peripheral subcomplex of IFT-B particle
chr3	7642066	7643479	7642368	7643267	-	Cre03.g204200.t1.2	Cre03.g204200.t1.2		7643204,7642678,7642066	7643479,7642810,7642472	
chr3	7641110	7642024	7641467	7641681	+	Cre03.g204212.t1.2	Cre03.g204212.t1.2		7641110	7642024	
chr3	8696019	8704622	8696656	8704554	-	Cre03.g204241.t1.1	Cre03.g204241.t1.1		8704491,8703871,8703335,8702790,8702411,8701683,8701460,8700839,8700400,8699645,8698265,8697931,8697416,8696019	8704622,8703996,8703448,8702891,8702570,8701788,8701518,8701299,8700524,8699795,8698343,8697948,8697860,8697212	
chr3	7637424	7640886	7638395	7640832	-	SAH1	Cre03.g204250.t1.2		7640796,7640054,7639716,7639151,7637424	7640886,7640459,7639851,7639490,7638929	found in the flagellar proteome [PMID: 15998802]; ts-lethal mutant was isolated (PMID 29743196)
chr3	7632408	7636999	7632751	7636955	-	Cre03.g204300.t1.1	Cre03.g204300.t1.1		7636676,7636284,7635752,7635245,7634638,7634225,7633663,7633276,7632408	7636999,7636388,7635853,7635331,7634768,7634305,7633880,7633367,7633039	
chr3	7627660	7632133	7627810	7631396	+	CLPR4	Cre03.g204350.t1.2		7627660,7627954,7628159,7628337,7628841,7629403,7629870,7630669,7631343	7627885,7627992,7628215,7628447,7628987,7629528,7629983,7630777,7632133	
chr3	8704708	8707052	8706291	8707002	-	Cre03.g204353.t1.1	Cre03.g204353.t1.1		8706906,8704708	8707052,8706801	
chr3	7623545	7627532	7624012	7627134	-	Cre03.g204400.t1.1	Cre03.g204400.t1.1		7626813,7626343,7626002,7625637,7625375,7625039,7623545	7627532,7626393,7626168,7625694,7625437,7625215,7624735	null-allele mutant was isolated (PMID 29743196)
chr3	7616610	7623498	7617167	7621549	+	Cre03.g204450.t1.2	Cre03.g204450.t1.2		7616610,7617591,7617856,7618168,7618387,7619117,7619996,7620357,7620628,7620895	7617494,7617696,7617992,7618257,7618845,7619718,7620071,7620427,7620739,7623498	
chr3	8707102	8713272	8707520	8712955	-	Cre03.g204465.t1.1	Cre03.g204465.t1.1		8712815,8712550,8712012,8711637,8711319,8711073,8710779,8710256,8710051,8709733,8709389,8709118,8708883,8708488,8708217,8707102	8713272,8712622,8712080,8711731,8711355,8711122,8710865,8710418,8710067,8709850,8709474,8709196,8708978,8708630,8708312,8707692	
chr3	8707102	8713272	8707520	8712955	-	Cre03.g204465.t2.1	Cre03.g204465.t2.1		8712815,8712550,8712012,8711637,8711319,8711073,8710779,8710340,8710051,8709733,8709389,8709118,8708883,8708488,8708217,8707102	8713272,8712622,8712080,8711731,8711355,8711122,8710865,8710418,8710067,8709850,8709474,8709196,8708978,8708630,8708312,8707692	
chr3	8707102	8713272	8707520	8712955	-	Cre03.g204465.t3.1	Cre03.g204465.t3.1		8712815,8712550,8712012,8711637,8711319,8711073,8710779,8710326,8709733,8709389,8709118,8708883,8708488,8708217,8707102	8713272,8712622,8712080,8711731,8711355,8711122,8710865,8710418,8709850,8709474,8709196,8708978,8708630,8708312,8707692	
chr3	7608830	7614531	7609102	7612882	+	CSE17	Cre03.g204500.t1.1		7608830,7609474,7609887,7610898,7611411,7612094,7612504	7609283,7609715,7610783,7611086,7611871,7612322,7614531	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr3	8713673	8718034	8713977	8716889	+	DNJ31	Cre03.g204577.t1.1		8713673,8714335,8714666,8715073,8715577	8714104,8714441,8714764,8715299,8718034	DnaJ-like protein, perhaps targeted to the chloroplast (contains N-terminal extension that is predicted by ChloroP to be chloroplast transit peptide); contains N-terminal J-domain (pfam00226); weak homology with Synechococcus Q2JXW1
chr3	7592609	7598619	7593952	7598375	-	Cre03.g204600.t1.1	Cre03.g204600.t1.1		7598000,7597092,7595886,7592609	7598619,7597827,7596899,7595526	
chr3	7601219	7605959	7601996	7605459	-	CPK3	Cre03.g204601.t1.1		7605835,7605674,7605390,7604933,7604273,7603772,7603385,7602869,7601219	7605959,7605727,7605563,7605040,7604365,7603825,7603546,7603022,7602145	Carbohydrate/purine kinase and Flagellar Associated Protein similar to adenosine kinase; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr3	7606080	7608651	7606310	7608223	+	Cre03.g204602.t1.1	Cre03.g204602.t1.1		7606080,7606446,7606770,7607168	7606314,7606509,7606843,7608651	
chr3	7586010	7587488	7586127	7586557	+	NUOB4	Cre03.g204650.t1.2		7586010	7587488	Precursor of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 13 kDa subunit; gi 44888965 gb AAS48193 (similar to Arabidopsis thaliana At2g31490 gene product) (NUOP2); PMID: 15450959; similar to mammal complex I B15 subunit and human NDUFA5 : PMID: 15710684
chr3	8718803	8728586	8719325	8727559	+	PDE21	Cre03.g204689.t1.1		8718803,8719478,8719918,8720136,8720442,8720640,8720915,8721327,8721646,8722020,8722420,8722868,8723304,8723575,8723876,8725190,8725759,8726013,8726499,8726727,8727060,8727373	8719403,8719606,8719968,8720195,8720501,8720705,8721190,8721350,8721776,8722074,8722541,8722971,8723350,8723688,8725033,8725370,8725895,8726335,8726595,8726900,8727164,8728586	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus.
chr3	7573114	7577639	7573279	7577397	-	Cre03.g204750.t1.2	Cre03.g204750.t1.2		7577254,7576903,7576385,7575800,7574763,7574075,7573114	7577639,7576988,7576430,7576052,7574882,7574442,7573787	
chr3	7577890	7579041	7578025	7578927	+	Cre03.g204751.t1.1	Cre03.g204751.t1.1		7577890,7578476,7578915	7578274,7578748,7579041	
chr3	7579044	7585889	7579163	7585739	-	Cre03.g204752.t1.1	Cre03.g204752.t1.1		7585658,7585442,7585135,7584716,7584214,7583780,7583258,7582538,7581926,7580298,7579044	7585889,7585521,7585213,7584803,7584411,7583886,7583383,7582621,7582036,7581530,7579163	
chr3	7568494	7573059	7569277	7572855	-	RTA2	Cre03.g204800.t1.2		7572594,7572060,7571458,7570954,7570338,7570076,7569718,7568494	7573059,7572191,7571604,7571058,7570433,7570142,7569881,7569394	
chr3	8728594	8731519	8728714	8731448	-	Cre03.g204801.t1.1	Cre03.g204801.t1.1		8731379,8731192,8730858,8730429,8729888,8729394,8728594	8731519,8731231,8731060,8730668,8730193,8729689,8729168	
chr3	7566920	7568491	7567357	7568152	+	Cre03.g204850.t1.2	Cre03.g204850.t1.2		7566920,7567791	7567404,7568491	
chr3	7563184	7566729	7563822	7566354	-	Cre03.g204900.t1.1	Cre03.g204900.t1.1		7565757,7565123,7564722,7564436,7564088,7563184	7566729,7565605,7564937,7564550,7564274,7563904	
chr3	8731633	8740624	8731805	8740591	+	Cre03.g204913.t1.1	Cre03.g204913.t1.1		8731633,8731942,8732082,8732294,8733073,8733688,8733976,8734223,8734522,8734682,8735014,8735402,8735746,8736076,8736383,8736832,8737201,8737767,8738130,8738487,8738786,8739207	8731866,8731987,8732131,8732910,8733388,8733820,8734079,8734346,8734592,8734859,8735273,8735623,8735952,8736171,8736654,8736995,8737578,8737910,8738257,8738626,8738931,8740624	
chr3	7559330	7563181	7559584	7562675	+	Cre03.g204950.t1.2	Cre03.g204950.t1.2		7559330,7560035,7560577,7561823	7559716,7560325,7561605,7563181	
chr3	7554982	7559189	7555429	7558953	-	IDA3	Cre03.g205000.t1.1		7558845,7558169,7557514,7554982	7559189,7558486,7557957,7557187	
chr3	8740626	8743832	8741070	8743550	-	Cre03.g205025.t1.1	Cre03.g205025.t1.1		8743358,8742515,8740626	8743832,8743279,8741244	
chr3	7551370	7554956	7551652	7554466	+	DGTT4	Cre03.g205050.t1.2		7551370,7551904,7552514,7552908,7553655,7554406	7551714,7552126,7552676,7553044,7553993,7554956	Diacylglycerol O-acyltransferase.  Green-lineage-and-diatoms conserved expressed protein
chr3	7548714	7551216	7550315	7550929	-	Cre03.g205100.t1.2	Cre03.g205100.t1.2		7550899,7548714	7551216,7550492	
chr3	8744333	8754005	8744533	8753605	+	Cre03.g205137.t1.1	Cre03.g205137.t1.1		8744333,8744654,8745014,8745230,8745442,8745625,8746039,8747076,8747647,8747980,8748498,8748841,8749871,8750615,8750842,8751286,8751580,8752083,8752501,8753017	8744593,8744761,8745077,8745306,8745486,8745810,8746825,8747446,8747742,8748066,8748635,8749683,8750422,8750729,8751085,8751424,8751923,8752254,8752833,8754005	
chr3	7543204	7546479	7543445	7546417	-	Cre03.g205150.t1.2	Cre03.g205150.t1.2		7544290,7543204	7546479,7543955	
chr3	7541340	7543201	7541407	7542877	+	CSB21	Cre03.g205200.t1.2		7541340,7542528,7542754	7542409,7542638,7543201	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr3	8754187	8759342	8754418	8759288	-	Cre03.g205249.t1.1	Cre03.g205249.t1.1		8759141,8758808,8758599,8758335,8758083,8757662,8757322,8757051,8756765,8756445,8756071,8755735,8755387,8754813,8754187	8759342,8759041,8758643,8758430,8758133,8757778,8757438,8757086,8756847,8756598,8756294,8755975,8755596,8755250,8754724	
chr3	7532484	7541239	7532941	7541061	-	ELG4	Cre03.g205250.t1.1		7541039,7540438,7539700,7539246,7538734,7538309,7537981,7537679,7537345,7536711,7536392,7535741,7535185,7534834,7534334,7533906,7533560,7532484	7541239,7540494,7539826,7539357,7538943,7538392,7538081,7537735,7537442,7536848,7536459,7535830,7535262,7534935,7534464,7533999,7533681,7533131	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr3	7521530	7530625	7521663	7529948	+	EXN7	Cre03.g205300.t1.1		7521530,7523164,7526225,7527259,7528465,7528837,7529326,7529504	7522861,7526004,7527008,7528197,7528600,7529045,7529386,7530625	
chr3	7509490	7521411	7509563	7520835	+	EXN8	Cre03.g205350.t1.1		7509490,7509727,7511058,7512034,7513276,7514921,7516513,7517358,7518024,7519466,7519733,7520339,7520673	7509571,7510772,7511789,7512906,7514181,7516227,7517068,7517769,7519151,7519601,7520106,7520399,7521411	
chr3	8759442	8762024	8759666	8762006	+	Cre03.g205361.t1.1	Cre03.g205361.t1.1		8759442,8759845,8760045,8760408,8760899,8761223,8762006	8759759,8759911,8760202,8760518,8760973,8761876,8762024	
chr3	7502624	7509009	7502692	7508878	-	Cre03.g205400.t1.1	Cre03.g205400.t1.1		7508800,7508329,7507769,7507478,7506860,7505796,7504882,7504168,7503523,7502624	7509009,7508591,7508069,7507567,7507318,7506662,7505248,7504604,7503653,7503218	
chr3	7500264	7502569	7500675	7502162	-	Cre03.g205428.t1.2	Cre03.g205428.t1.2		7502159,7501485,7500264	7502569,7502037,7501190	
chr3	7494270	7500257	7494510	7498241	+	Cre03.g205450.t1.1	Cre03.g205450.t1.1		7494270,7494876,7495250,7495766,7497070,7498115	7494534,7494956,7495315,7496831,7497725,7500257	
chr3	8762073	8766406	8762105	8766168	+	Cre03.g205473.t1.1	Cre03.g205473.t1.1		8762073,8762329,8762769,8763018,8763207,8763536,8763701,8763977,8764200,8764380,8764570,8764846,8765059,8765249,8765483,8765761,8766069	8762141,8762405,8762832,8763059,8763273,8763579,8763726,8764039,8764236,8764435,8764671,8764880,8765131,8765291,8765521,8765832,8766406	
chr3	7490642	7493609	7492144	7493357	-	Cre03.g205500.t1.1	Cre03.g205500.t1.1		7493291,7492403,7490642	7493609,7493194,7492171	
chr3	7482150	7489924	7482405	7488597	+	Cre03.g205550.t1.1	Cre03.g205550.t1.1		7482150,7483058,7483499,7484524,7484802,7486232,7487315,7487685,7487970,7488300	7482711,7483261,7484338,7484575,7485943,7486941,7487486,7487762,7488032,7489924	
chr3	8772563	8778878	8773280	8777133	+	Cre03.g205585.t1.1	Cre03.g205585.t1.1		8772563,8775064,8776023	8774936,8775834,8778878	
chr3	7478570	7481961	7478573	7480724	+	Cre03.g205600.t1.2	Cre03.g205600.t1.2		7478570,7479058,7479676,7479858,7480319,7480607	7478837,7479109,7479710,7479971,7480372,7481961	
chr3	7471690	7478521	7471797	7478249	+	Cre03.g205650.t1.2	Cre03.g205650.t1.2		7471690,7472129,7472383,7472786,7473516,7473983,7474617,7475232,7475485,7475986,7476744,7477133,7477581,7478183	7471933,7472175,7472546,7472927,7473650,7474116,7474758,7475336,7475580,7476063,7476821,7477274,7477990,7478521	
chr3	8778953	8790098	8779007	8789626	+	FAP350	Cre03.g205697.t1.1		8778953,8779156,8779584,8780029,8780860,8781350,8781629,8782103,8783089,8783747,8784451,8785078,8785359,8785929,8786234,8786697,8787078,8787575,8788261,8788738,8789215	8779064,8779310,8779731,8780262,8780949,8781481,8781749,8782293,8783192,8783910,8784575,8785131,8785520,8785968,8786484,8786873,8787320,8787928,8788371,8788872,8790098	
chr3	7462770	7471642	7462858	7471106	+	Cre03.g205700.t1.1	Cre03.g205700.t1.1		7462770,7463333,7463875,7465201,7466360,7466841,7467327,7467701,7469099,7469499,7469997,7470195,7470575,7470867	7463065,7463549,7463987,7466004,7466572,7466997,7467529,7468879,7469239,7469852,7470029,7470329,7470623,7471642	
chr3	7462770	7471642	7462858	7471106	+	Cre03.g205700.t2.1	Cre03.g205700.t2.1		7462770,7463336,7463875,7465201,7466360,7466841,7467327,7467701,7469099,7469499,7469997,7470195,7470575,7470867	7463065,7463549,7463987,7466004,7466572,7466997,7467529,7468879,7469239,7469852,7470029,7470329,7470623,7471642	
chr3	7453270	7462721	7453514	7461812	+	Cre03.g205701.t1.2	Cre03.g205701.t1.2		7453270,7453928,7454492,7454756,7456172,7456965,7457268,7457802,7459232,7459631,7460110,7460398,7461336,7461582	7453715,7454147,7454601,7455418,7456381,7457136,7457452,7458935,7459372,7459936,7460142,7460547,7461390,7462721	
chr3	7453270	7462721	7453514	7461812	+	Cre03.g205701.t2.1	Cre03.g205701.t2.1		7453270,7453931,7454492,7454756,7456172,7456965,7457268,7457802,7459232,7459631,7460110,7460398,7461336,7461582	7453715,7454147,7454601,7455418,7456381,7457136,7457452,7458935,7459372,7459936,7460142,7460547,7461390,7462721	
chr3	7446880	7451861	7447066	7451304	+	Cre03.g205750.t1.1	Cre03.g205750.t1.1		7446880,7447408,7447670,7447984,7448198,7448450,7448752,7448975,7449227,7449639,7449965,7450341,7451304	7447141,7447539,7447723,7448059,7448270,7448522,7448794,7449045,7449418,7449761,7450076,7451248,7451861	
chr3	7441390	7446784	7441646	7446612	+	Cre03.g205800.t1.2	Cre03.g205800.t1.2		7441390,7442077,7442368,7442929,7443267,7443801,7444742,7444982,7445413,7445865	7441718,7442118,7442526,7443015,7443343,7443944,7444811,7445114,7445726,7446784	
chr3	8790107	8794032	8790355	8793918	-	Cre03.g205809.t1.1	Cre03.g205809.t1.1		8793228,8792853,8792134,8791816,8791308,8790856,8790107	8794032,8793020,8792598,8791866,8791649,8790987,8790655	
chr3	7434254	7441279	7435860	7441056	-	MFT6	Cre03.g205850.t1.2		7441018,7440109,7439653,7439196,7438659,7437679,7437179,7436757,7436370,7434254	7441279,7440708,7439848,7439366,7438804,7438442,7437330,7436919,7436515,7436085	putative MATE efflux family protein, related to Arabidopsis putative integral membrane protein
chr3	7429936	7433549	7431229	7432623	-	DCA1	Cre03.g205900.t1.2		7433290,7432248,7429936	7433549,7432799,7432027	produces decarboxylated S-adoMet for the fisrt step of polyamine biosynthesis; translationally regulated by a negatively acting uORF MPAVKRTSMRSVYDPIATEPIVASEPARLVVKRTACFADTGSLPS which is regulated in turn by an overlapping tiny ORF" MSRPQDASC (PMID: 16176926); (adometdc) gi:57336132
chr3	8794223	8798234	8794337	8798029	+	Cre03.g205921.t1.1	Cre03.g205921.t1.1		8794223,8795506,8796002,8796558,8796937	8795315,8795664,8796289,8796677,8798234	
chr3	7421375	7427299	7423850	7426959	-	Cre03.g205950.t1.1	Cre03.g205950.t1.1		7426813,7426482,7425962,7425344,7424697,7421375	7427299,7426682,7426176,7425597,7424802,7424467	
chr3	7418160	7421371	7418329	7420911	+	Cre03.g206000.t1.2	Cre03.g206000.t1.2		7418160,7418520,7418755,7419105,7419476,7420019,7420450,7420722	7418425,7418591,7418851,7419277,7419568,7420195,7420506,7421371	
chr3	8798323	8804424	8799519	8803164	+	Cre03.g206033.t1.1	Cre03.g206033.t1.1		8798323,8799515,8799715,8799941,8800138,8800624,8801297,8801609,8802067,8802369,8802819	8798976,8799599,8799788,8799986,8800501,8801113,8801427,8801784,8802187,8802557,8804424	
chr3	6983849	6987754	6986705	6987258	-	Cre03.g206087.t1.1	Cre03.g206087.t1.1		6987251,6983849	6987754,6987061	
chr3	8804643	8806668	8804774	8806279	+	Cre03.g206145.t1.1	Cre03.g206145.t1.1		8804643,8805064,8805527,8806135	8804891,8805363,8806030,8806668	
chr3	7379270	7393036	7379993	7391717	+	Cre03.g206200.t1.1	Cre03.g206200.t1.1		7379270,7380161,7380961,7383398,7384843,7389558,7390418,7390768,7391054,7391624	7380026,7380788,7383167,7384673,7389336,7390147,7390603,7390893,7391422,7393036	
chr3	7379270	7393036	7379993	7391717	+	Cre03.g206200.t2.1	Cre03.g206200.t2.1		7379270,7380161,7380961,7383398,7384843,7389558,7390418,7390771,7391054,7391624	7380026,7380788,7383167,7384673,7389336,7390147,7390603,7390893,7391422,7393036	
chr3	7393130	7399421	7393433	7398752	+	Cre03.g206201.t1.1	Cre03.g206201.t1.1		7393130,7395665,7396189,7396665,7397015	7395479,7396018,7396528,7396813,7399421	
chr3	7399429	7409469	7401447	7408709	-	Cre03.g206202.t1.1	Cre03.g206202.t1.1		7408682,7408469,7407925,7407494,7407205,7406865,7406477,7405960,7404881,7399429	7409469,7408582,7408032,7407501,7407325,7406944,7406715,7406056,7405778,7404618	
chr3	7410414	7417609	7411021	7417264	-	Cre03.g206203.t1.1	Cre03.g206203.t1.1		7416637,7415524,7415256,7414783,7414466,7413029,7412663,7412288,7412006,7411707,7410414	7417609,7416403,7415353,7415043,7414639,7414192,7412872,7412520,7412084,7411739,7411408	
chr3	7410414	7417609	7411021	7417264	-	Cre03.g206203.t2.1	Cre03.g206203.t2.1		7416637,7415524,7415256,7414783,7414466,7413029,7412663,7412288,7412006,7411707,7410414	7417609,7416400,7415353,7415043,7414639,7414192,7412872,7412520,7412084,7411739,7411408	
chr3	7373620	7378903	7373845	7377948	+	Cre03.g206250.t1.1	Cre03.g206250.t1.1		7373620,7374225,7374603,7374766,7375247,7375766,7375956,7377435,7377671,7377948	7373936,7374251,7374611,7374974,7375351,7375840,7376183,7377510,7377837,7378903	
chr3	8806773	8817716	8806856	8815788	+	Cre03.g206257.t1.1	Cre03.g206257.t1.1		8806773,8807286,8807607,8808175,8808368,8808649,8809411,8809846,8811293,8811736,8811933,8812179,8814066,8814326,8814882,8815185,8815563,8815734	8807031,8807484,8808057,8808228,8808540,8809171,8809686,8811188,8811520,8811795,8812027,8813927,8814190,8814706,8814952,8815431,8815622,8817716	
chr3	7354790	7360461	7354875	7359336	+	OPR19	Cre03.g206350.t1.1		7354790,7355246,7357428,7358796	7354959,7357275,7358523,7360461	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr3	7360510	7373385	7360729	7371292	+	Cre03.g206351.t1.1	Cre03.g206351.t1.1		7360510,7364002,7368147,7369573,7370022	7363600,7367985,7369409,7369841,7373385	
chr3	8817730	8827932	8819152	8827529	-	Cre03.g206369.t1.1	Cre03.g206369.t1.1		8827216,8826777,8826203,8826036,8825631,8824963,8824416,8823572,8822967,8822735,8820907,8820641,8820151,8819958,8819575,8819360,8817730	8827932,8826975,8826653,8826089,8825803,8825491,8824694,8824197,8823473,8822829,8822586,8820765,8820531,8820028,8819785,8819419,8819200	
chr3	7352530	7353298	7352578	7352991	+	Cre03.g206450.t1.2	Cre03.g206450.t1.2		7352530,7352771,7352949	7352682,7352819,7353298	
chr3	7353304	7354678	7353597	7353820	-	Cre03.g206452.t1.1	Cre03.g206452.t1.1		7354340,7353304	7354678,7353977	
chr3	8829507	8833121	8830327	8832871	-	Cre03.g206481.t1.1	Cre03.g206481.t1.1		8832742,8832493,8831983,8831639,8830907,8829507	8833121,8832626,8832067,8831798,8830972,8830719	
chr3	7346044	7352379	7346211	7352342	-	Cre03.g206500.t1.1	Cre03.g206500.t1.1		7352111,7351614,7351291,7350709,7350187,7349825,7349348,7348856,7348370,7348019,7346044	7352379,7351779,7351478,7351051,7350546,7349979,7349560,7349119,7348588,7348059,7347829	
chr3	7341470	7346011	7341721	7345217	+	CPLD2	Cre03.g206550.t1.2		7341470,7342052,7342638,7343135,7343409,7343795,7344152,7344510,7344845,7345151	7341835,7342148,7342726,7343170,7343526,7343917,7344230,7344569,7344935,7346011	Similar to phosphoglycolate phosphatase/2-deoxyglucose-6-phosphate phosphatase
chr3	8833186	8838051	8833543	8838010	-	Cre03.g206593.t1.1	Cre03.g206593.t1.1		8837920,8837778,8837433,8836968,8836711,8836358,8835941,8835636,8835328,8835016,8834597,8834098,8833816,8833186	8838051,8837870,8837572,8837073,8836824,8836414,8836012,8835758,8835489,8835135,8834698,8834307,8833863,8833651	
chr3	7333370	7341035	7333424	7339886	+	AAD1	Cre03.g206600.t1.2		7333370,7334004,7334315,7334843,7335270,7336463,7336837,7337173,7337660,7338081,7338333,7338643,7339042,7339427,7339811	7333560,7334110,7334491,7334918,7335416,7336610,7336893,7337310,7337771,7338156,7338425,7338803,7339245,7339534,7341035	acetohydroxyacid dehydratase (EC 4.2.1.9); ILVD; dihydroxy-acid dehydrase; probable plastid location, based on homology and on Target-P prediction
chr3	7329464	7332792	7329579	7331829	+	Cre03.g206650.t1.2	Cre03.g206650.t1.2		7329464,7330776,7331725	7330623,7331517,7332792	
chr3	7322750	7329343	7323019	7329238	-	Cre03.g206700.t1.1	Cre03.g206700.t1.1		7329189,7329012,7328728,7327354,7326666,7326164,7325733,7322750	7329343,7329107,7328789,7328617,7327192,7326488,7326001,7325569	
chr3	8838103	8842561	8838273	8842019	-	Cre03.g206705.t1.1	Cre03.g206705.t1.1		8842316,8841850,8841473,8841157,8840859,8840424,8840155,8839766,8839426,8838975,8838545,8838103	8842561,8842210,8841552,8841237,8840981,8840543,8840253,8839889,8839550,8839093,8838644,8838333	
chr3	7318998	7322703	7319720	7322671	-	Cre03.g206750.t1.2	Cre03.g206750.t1.2		7322629,7322437,7321920,7321648,7321230,7320713,7320497,7320193,7318998	7322703,7322534,7322023,7321700,7321334,7320828,7320530,7320351,7319909	
chr3	7313284	7318995	7313461	7318532	+	HXT1	Cre03.g206800.t1.1		7313284,7313804,7314396,7314963,7315512,7316221,7316714,7317224,7317659,7317856,7318095,7318460	7313570,7314156,7314623,7315122,7315697,7316366,7316845,7317392,7317693,7317900,7318169,7318995	Putative plastid hexose (glucose) transporter, based on similarity to putative plastid glucose transporters from maize (GenBank AAF74568), olive (GenBank AAK62031), tobacco (GenBank AAF74566), and potato (GenBank AAF74567)
chr3	8842751	8851531	8843524	8850598	-	Cre03.g206817.t1.1	Cre03.g206817.t1.1		8851437,8850747,8850326,8849977,8849662,8848569,8848229,8842751	8851531,8850934,8850620,8850130,8849820,8849526,8848299,8848084	
chr3	7310735	7313118	7310812	7312942	+	Cre03.g206850.t1.1	Cre03.g206850.t1.1		7310735,7311261,7311433,7311947,7312279,7312512,7312809	7311024,7311296,7311636,7312007,7312398,7312564,7313118	
chr3	7302888	7310433	7303166	7310051	-	Cre03.g206900.t1.1	Cre03.g206900.t1.1		7309779,7309396,7309085,7308580,7308088,7307496,7307185,7306672,7306242,7305781,7305359,7305074,7304691,7304347,7302888	7310433,7309561,7309141,7308861,7308303,7307886,7307312,7306836,7306519,7305982,7305463,7305118,7304876,7304517,7304216	
chr3	8851924	8856124	8852668	8856042	-	EGY1	Cre03.g206929.t1.1		8855472,8854808,8853902,8853543,8853168,8852895,8851924	8856124,8854945,8854591,8853683,8853293,8852978,8852722	M50 metalloprotease; located in thylakoid membrane; plant ortholog involved in chloroplast development and gravitropism
chr3	7292298	7301913	7293071	7301703	-	Cre03.g206950.t1.1	Cre03.g206950.t1.1		7301323,7300643,7299791,7299324,7299020,7298688,7298261,7297473,7297006,7296732,7296349,7295564,7295290,7294919,7294733,7294043,7293725,7293362,7292298	7301913,7301155,7300472,7299550,7299119,7298806,7298495,7298185,7297191,7296811,7296569,7296046,7295331,7295095,7294792,7294534,7293881,7293542,7293192	
chr3	7302034	7302855	7302138	7302694	+	Cre03.g206952.t1.1	Cre03.g206952.t1.1		7302034,7302388	7302198,7302855	
chr3	7289912	7292083	7290560	7292014	-	Cre03.g207000.t1.2	Cre03.g207000.t1.2		7291714,7291381,7291020,7290788,7289912	7292083,7291534,7291154,7290876,7290659	
chr3	8856562	8860943	8857325	8859799	+	Cre03.g207041.t1.1	Cre03.g207041.t1.1		8856562,8857589,8857770,8858403,8858756,8859316	8857408,8857636,8858027,8858529,8858992,8860943	
chr3	7288444	7289403	7288537	7289306	+	RPL29	Cre03.g207050.t1.2		7288444,7288668,7288908,7289270	7288590,7288716,7288934,7289403	Cytosolic 60S large ribosomal subunit protein L29
chr3	7286874	7288395	7286925	7287379	+	Cre03.g207100.t1.2	Cre03.g207100.t1.2		7286874,7287210	7287068,7288395	
chr3	7280654	7285565	7280862	7285063	+	Cre03.g207150.t1.1	Cre03.g207150.t1.1		7280654,7281251,7281460,7281752,7282110,7282409,7282933,7283285,7283566,7283825,7284047,7284432,7284959	7281080,7281281,7281563,7281892,7282144,7282653,7283047,7283383,7283632,7283891,7284199,7284582,7285565	
chr3	7285614	7286745	7285682	7286366	+	Cre03.g207152.t1.1	Cre03.g207152.t1.1		7285614,7285897,7286268	7285723,7285967,7286745	
chr3	8860946	8864471	8861209	8864232	-	Cre03.g207153.t1.1	Cre03.g207153.t1.1		8863956,8863474,8863144,8862821,8862424,8862095,8860946	8864471,8863779,8863227,8862871,8862581,8862176,8861854	
chr3	7275298	7280544	7276237	7280300	-	Cre03.g207200.t1.1	Cre03.g207200.t1.1		7280279,7279816,7279319,7279027,7278412,7277582,7277056,7275298	7280544,7279986,7279597,7279122,7278522,7278157,7277148,7276843	
chr3	7270838	7274883	7272264	7274531	-	GLN4	Cre03.g207250.t1.2		7274402,7274063,7270838	7274883,7274305,7273626	Putative glutamine synthetase (EC 6.3.1.2), (Glutamate-ammonia ligase); no predicted organelle targeting
chr3	8864576	8868851	8865610	8868216	-	Cre03.g207265.t1.1	Cre03.g207265.t1.1		8866524,8864576	8868851,8866339	
chr3	7262578	7264203	7263095	7264110	-	Cre03.g207350.t1.1	Cre03.g207350.t1.1		7264065,7263467,7262578	7264203,7263836,7263256	
chr3	7262818	7264203	7263095	7264110	-	Cre03.g207350.t2.1	Cre03.g207350.t2.1		7264065,7263467,7262818	7264203,7263836,7263256	
chr3	7264364	7270835	7264434	7270448	+	Cre03.g207351.t1.1	Cre03.g207351.t1.1		7264364,7265834,7266367,7266719,7267078,7267408,7267883,7268233,7268440,7269014,7269366,7269641,7269948,7270363	7265521,7265919,7266411,7266825,7267201,7267485,7267966,7268285,7268496,7269118,7269426,7269759,7270037,7270835	
chr3	8869632	8873609	8870404	8872137	+	Cre03.g207377.t2.1	Cre03.g207377.t2.1		8869632,8870875,8871345	8870593,8871117,8873609	
chr3	8869332	8873609	8870449	8872137	+	Cre03.g207377.t1.1	Cre03.g207377.t1.1		8869332,8870411,8870875,8871345	8869965,8870593,8871117,8873609	
chr3	7256074	7262515	7256415	7261887	+	Cre03.g207400.t1.2	Cre03.g207400.t1.2		7256074,7256934,7257313,7257563,7257847,7258176,7258623,7258882,7259328,7259657,7259929,7260203,7260727,7261067,7261473,7261812	7256676,7257142,7257406,7257628,7257891,7258418,7258682,7258962,7259462,7259749,7260036,7260349,7260826,7261278,7261568,7262515	
chr3	8873626	8877421	8874230	8877275	-	Cre03.g207489.t1.1	Cre03.g207489.t1.1		8876909,8873626	8877421,8876771	
chr3	7249220	7252373	7250714	7252327	-	Cre03.g207500.t1.1	Cre03.g207500.t1.1		7251978,7251783,7251309,7249220	7252373,7251860,7251414,7251144	null-allele passenger mutation was isolated (PMID 29743196)
chr3	7249220	7252373	7249860	7252327	-	Cre03.g207500.t2.1	Cre03.g207500.t2.1		7251978,7251783,7251309,7250202,7249220	7252373,7251860,7251414,7251144,7249860	null-allele passenger mutation was isolated (PMID 29743196)
chr3	7252428	7255783	7252939	7255512	-	Cre03.g207502.t1.1	Cre03.g207502.t1.1		7255296,7254993,7254678,7254524,7254283,7253960,7253645,7253359,7253156,7252428	7255783,7255127,7254772,7254539,7254359,7254067,7253741,7253445,7253248,7253023	
chr3	7245044	7249153	7245118	7248869	+	ADH8	Cre03.g207550.t1.2		7245044,7245362,7245856,7246237,7246510,7246869,7247149,7247793,7248115,7248530,7248832	7245232,7245431,7246029,7246306,7246708,7246981,7247305,7247843,7248268,7248692,7249153	Alcohol dehydrogenase, zinc-containing
chr3	7241514	7244852	7241658	7244022	+	NSG6	Cre03.g207600.t1.2		7241514,7242187,7242447,7242685,7243188,7243454,7243723,7243882	7241933,7242310,7242551,7242917,7243305,7243541,7243731,7244852	
chr3	7241514	7244852	7241658	7244022	+	NSG6	Cre03.g207600.t2.1		7241514,7242187,7242447,7242697,7243188,7243454,7243723,7243882	7241933,7242310,7242551,7242917,7243305,7243541,7243731,7244852	
chr3	8877922	8882655	8878219	8881990	+	Cre03.g207601.t1.1	Cre03.g207601.t1.1		8877922,8879417,8879858,8880403,8880751	8878948,8879680,8880124,8880525,8882655	
chr3	7239468	7241383	7239833	7241262	-	Cre03.g207650.t1.2	Cre03.g207650.t1.2		7241174,7240932,7240204,7239468	7241383,7241074,7240685,7240038	
chr3	7234063	7238264	7234153	7237712	+	FPS1	Cre03.g207700.t1.1		7234063,7234440,7234774,7235065,7235258,7235652,7236057,7236314,7236582,7236888,7237313,7237631	7234210,7234547,7234857,7235121,7235344,7235768,7236140,7236403,7236641,7237028,7237429,7238264	putative farnesyl pyrophosphate synthase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase)
chr3	8883087	8891571	8883876	8891393	-	ISA3	Cre03.g207713.t1.1		8891143,8890515,8889957,8889046,8888165,8887777,8887458,8887112,8886586,8886162,8885693,8885319,8884542,8883087	8891571,8890655,8890153,8889243,8888382,8887911,8887527,8887196,8886698,8886249,8885851,8885477,8884719,8884168	Starch debranching enzyme; Misplaced, loosely branched chains are trimmed by this DBE from a maturing structure to allow polysaccharide crystallization
chr3	7215227	7233913	7215890	7233762	-	Cre03.g207750.t1.1	Cre03.g207750.t1.1		7233433,7232618,7232274,7231973,7231677,7231518,7231229,7230921,7230362,7227231,7226977,7226652,7226443,7226128,7219436,7219197,7215227	7233913,7233075,7232490,7232117,7231811,7231574,7231388,7231056,7230762,7230202,7227121,7226866,7226520,7226282,7225976,7219309,7219056	
chr3	7211786	7215173	7212342	7215135	-	ADH5	Cre03.g207800.t1.2		7215033,7214649,7214272,7213980,7213787,7213514,7213168,7212905,7212580,7211786	7215173,7214706,7214515,7214124,7213834,7213626,7213375,7213058,7212742,7212379	Alcohol dehydrogenase, zinc-containing
chr3	8891702	8896993	8891876	8896929	+	Cre03.g207825.t1.1	Cre03.g207825.t1.1		8891702,8892451,8893092,8893487,8893954,8894283,8894877,8895355,8895911,8896439,8896898	8892044,8892675,8893184,8893570,8894036,8894566,8895040,8895563,8896046,8896518,8896993	
chr3	8891702	8896873	8891876	8896523	+	Cre03.g207825.t2.1	Cre03.g207825.t2.1		8891702,8892451,8893092,8893487,8893954,8894283,8894877,8895355,8895911,8896439	8892044,8892675,8893184,8893570,8894036,8894566,8895040,8895563,8896046,8896873	
chr3	8891702	8898963	8891876	8896523	+	Cre03.g207825.t3.1	Cre03.g207825.t3.1		8891702,8892451,8893092,8893487,8893954,8894283,8894877,8895355,8895911,8896439	8892044,8892675,8893184,8893570,8894036,8894566,8895040,8895563,8896046,8898963	
chr3	7201856	7204403	7202064	7203948	+	CYCA1	Cre03.g207900.t1.1		7201856,7202258,7202449,7202756,7203008,7203537	7202175,7202338,7202611,7202865,7203397,7204403	Cyclin A homolog; A-type cyclin homolog. Probable major activator of CDKA1; null mutation shows delayed entry into cell division (PMID 29367304).
chr3	7205129	7209513	7206122	7209287	-	Cre03.g207901.t1.1	Cre03.g207901.t1.1		7209211,7208734,7208306,7208017,7207780,7207426,7207101,7206860,7205129	7209513,7208985,7208390,7208182,7207869,7207523,7207251,7206988,7206749	
chr3	7197114	7199655	7197241	7198508	+	Cre03.g207918.t1.2	Cre03.g207918.t1.2		7197114,7197432,7197625,7197839	7197293,7197520,7197699,7199655	
chr3	8896876	8898851	8897552	8898479	-	Cre03.g207937.t1.1	Cre03.g207937.t1.1		8898332,8897854,8896876	8898851,8898189,8897741	
chr3	7191428	7197003	7192774	7196876	-	Cre03.g207950.t1.2	Cre03.g207950.t1.2		7196860,7196730,7196340,7195745,7194511,7193441,7191428	7197003,7196793,7196523,7196192,7194840,7194376,7193241	
chr3	7189240	7191313	7189274	7190298	+	Cre03.g208000.t1.1	Cre03.g208000.t1.1		7189240,7189391,7189601,7190244	7189334,7189514,7189734,7191313	
chr3	8900086	8906943	8901363	8906688	-	Cre03.g208049.t1.1	Cre03.g208049.t1.1		8906480,8905954,8905436,8904634,8903789,8903277,8902936,8902594,8902069,8900086	8906943,8906342,8905617,8905264,8904399,8903429,8903047,8902674,8902245,8901678	
chr3	7185830	7187985	7185935	7187272	+	HAD1	Cre03.g208050.t1.2		7185830,7186412,7186766,7187146	7186135,7186539,7186908,7187985	D-3-hydroxyoctanoyl-[acyl carrier protein] dehydratase
chr3	7177068	7184893	7177581	7184653	-	RNB1	Cre03.g208100.t1.1		7184645,7183980,7183719,7183348,7182955,7182416,7182120,7181858,7181256,7180914,7180431,7180079,7179616,7179076,7178597,7177068	7184893,7184475,7183811,7183509,7183099,7182728,7182201,7182003,7181393,7181071,7180576,7180231,7179710,7179429,7178766,7178333	RNase II,  probably belongs to nucleo-cytosolic exosome complex; RNase B family protein, 3'-5' exoribonuclease, dis3-like, RNB, Rrp44, ribonuclease II
chr3	8907099	8911031	8907371	8910935	-	Cre03.g208161.t1.1	Cre03.g208161.t1.1		8910725,8910329,8909263,8908133,8907099	8911031,8910381,8910184,8909122,8907821	
chr3	8911086	8921311	8911727	8921183	-	Cre03.g208273.t1.1	Cre03.g208273.t1.1		8920975,8919643,8914902,8911086	8921311,8920836,8919442,8914745	
chr3	7151676	7153067	7152451	7152722	+	Cre03.g208300.t1.2	Cre03.g208300.t1.2		7151676	7153067	
chr3	7153116	7159247	7153484	7157645	+	Cre03.g208303.t1.1	Cre03.g208303.t1.1		7153116,7154852,7155386,7155876,7157082	7154543,7155217,7155729,7156672,7159247	
chr3	7159716	7162267	7160109	7162217	+	Cre03.g208304.t1.1	Cre03.g208304.t1.1		7159716,7162211	7161411,7162267	
chr3	7163104	7171855	7163554	7170822	+	Cre03.g208305.t1.1	Cre03.g208305.t1.1		7163104,7163751,7164495,7165879,7167343,7168366	7163561,7163920,7165775,7166253,7167817,7171855	
chr3	7172249	7176143	7172863	7176055	-	Cre03.g208306.t1.1	Cre03.g208306.t1.1		7175643,7175039,7174199,7172249	7176143,7175272,7174668,7173016	
chr3	8921439	8922381	8922123	8922307	-	Cre03.g208385.t1.1	Cre03.g208385.t1.1		8921439	8922381	
chr3	8922532	8925859	8922763	8924517	+	Cre03.g208497.t1.1	Cre03.g208497.t1.1		8922532,8923056,8923276,8924478	8922965,8923094,8923868,8925859	
chr3	6998843	7005724	6999837	7005270	-	Cre03.g208550.t1.2	Cre03.g208550.t1.2		7003772,7003634,7001071,6998843	7005724,7003681,7003276,7000945	
chr3	7006466	7012067	7006524	7011952	+	Cre03.g208551.t1.1	Cre03.g208551.t1.1		7006466,7010229,7010743	7008587,7010328,7012067	
chr3	7029526	7033437	7029810	7030574	+	Cre03.g208552.t1.1	Cre03.g208552.t1.1		7029526,7030030,7030486	7029813,7030172,7033437	
chr3	7037366	7039205	7037435	7039201	+	Cre03.g208553.t1.1	Cre03.g208553.t1.1		7037366,7039195	7039121,7039205	
chr3	7096346	7102327	7096378	7101985	+	Cre03.g208554.t1.1	Cre03.g208554.t1.1		7096346,7097108,7100946	7096934,7099223,7102327	
chr3	7102726	7110477	7103767	7110420	+	Cre03.g208555.t1.1	Cre03.g208555.t1.1		7102726,7103618,7108330,7109935	7103070,7105919,7109703,7110477	
chr3	7113450	7123365	7113484	7122355	-	Cre03.g208556.t1.1	Cre03.g208556.t1.1		7122585,7122333,7119270,7118686,7113669,7113450	7123365,7122356,7122188,7119120,7116190,7113598	
chr3	7129136	7130775	7129805	7130616	-	Cre03.g208557.t1.1	Cre03.g208557.t1.1		7130507,7130260,7129908,7129136	7130775,7130447,7130169,7129831	
chr3	7134664	7136205	7135130	7136063	-	Cre03.g208558.t1.1	Cre03.g208558.t1.1		7136021,7134664	7136205,7135742	
chr3	8929802	8933233	8929965	8931608	+	Cre03.g208609.t1.1	Cre03.g208609.t1.1		8929802,8930275,8930487,8931569	8930164,8930313,8930953,8933233	
chr3	8937526	8944501	8937973	8944291	-	CGL92	Cre03.g208721.t1.1		8944099,8942967,8942662,8942340,8941825,8941523,8940587,8939591,8938496,8937526	8944501,8943922,8942791,8942420,8941974,8941609,8940694,8940239,8939416,8938245	
chr3	8944672	8961904	8944931	8961169	+	Cre03.g208833.t1.1	Cre03.g208833.t1.1		8944672,8945119,8947504,8947829,8948153,8948379,8948895,8949154,8949526,8949939,8950217,8950544,8950894,8951106,8951517,8951921,8952194,8952497,8952665,8959756,8960199,8960620	8944949,8947341,8947709,8947975,8948249,8948542,8948964,8949318,8949627,8950007,8950303,8950681,8950956,8951383,8951775,8951992,8952309,8952545,8959632,8959989,8960337,8961904	
chr3	8961906	8963261	8962567	8963135	-	Cre03.g208945.t1.1	Cre03.g208945.t1.1		8962848,8961906	8963261,8962688	
chr3	8963312	8965651	8964706	8965428	-	Cre03.g209057.t1.1	Cre03.g209057.t1.1		8964979,8963312	8965651,8964827	
chr3	8966662	8968466	8967056	8967369	+	Cre03.g209169.t1.1	Cre03.g209169.t1.1		8966662	8968466	
chr3	8968622	8982363	8968784	8981745	+	Cre03.g209281.t1.1	Cre03.g209281.t1.1		8968622,8969029,8969307,8969624,8970199,8970623,8971049,8971496,8971846,8972431,8973160,8973638,8974413,8974944,8975731,8976221,8976883,8977425,8977751,8978189,8979400,8979712,8980575,8981463	8968862,8969127,8969363,8969731,8970324,8970880,8971099,8971537,8972163,8972931,8973293,8973764,8974468,8975292,8975814,8976337,8977005,8977499,8977873,8978294,8979499,8979879,8981148,8982363	
chr3	8982412	8986273	8982452	8985573	+	Cre03.g209393.t1.1	Cre03.g209393.t1.1		8982412,8982777,8983347,8983744,8984144,8984470,8985030,8985389	8982612,8983062,8983477,8983857,8984264,8984726,8985174,8986273	
chr3	8986322	8991245	8986690	8989459	+	Cre03.g209505.t1.1	Cre03.g209505.t1.1		8986322,8986613,8987614,8988058,8988699,8989225	8986503,8986771,8987900,8988192,8988807,8991245	
chr3	8991266	8995041	8991686	8994859	-	Cre03.g209617.t1.1	Cre03.g209617.t1.1		8994794,8992538,8991266	8995041,8994638,8992091	
chr3	8995096	9001931	8995642	9001703	-	Cre03.g209729.t1.1	Cre03.g209729.t1.1		9001651,9001414,9000758,8998776,8998430,8998115,8997613,8997131,8996761,8995096	9001931,9001533,9001224,9000629,8998653,8998345,8997972,8997475,8996953,8996587	
chr3	9002062	9005050	9002133	9004595	+	Cre03.g209841.t1.1	Cre03.g209841.t1.1		9002062,9002421,9002884,9003119,9003421,9003751,9004155,9004583	9002220,9002475,9002917,9003148,9003466,9003865,9004252,9005050	
chr3	9008550	9017105	9009136	9016330	-	Cre03.g209953.t1.1	Cre03.g209953.t1.1		9016142,9014840,9014543,9012961,9012627,9011664,9011256,9009398,9008550	9017105,9014990,9014596,9014395,9012718,9012444,9011332,9010987,9009190	
chr3	9008550	9017105	9009136	9016330	-	Cre03.g209953.t2.1	Cre03.g209953.t2.1		9016142,9014840,9014543,9012961,9012627,9011823,9011256,9009398,9008550	9017105,9014990,9014596,9014395,9012718,9012444,9011332,9010987,9009190	
chr3	9017519	9031025	9019304	9030334	-	Cre03.g210065.t1.1	Cre03.g210065.t1.1		9030544,9029233,9028784,9028143,9027851,9027467,9027111,9025421,9024540,9024096,9023747,9023424,9023026,9021831,9021514,9020491,9020208,9019864,9017519	9031025,9030375,9028996,9028558,9028008,9027660,9027279,9026991,9025169,9024324,9023868,9023485,9023194,9022661,9021589,9021332,9020323,9020041,9019619	null-allele passenger mutation was isolated (PMID 29743196)
chr3	9031836	9035157	9032249	9034376	+	Cre03.g210177.t1.1	Cre03.g210177.t1.1		9031836,9032459,9032660,9033031,9033393,9033935,9034259	9032341,9032478,9032767,9033083,9033473,9033979,9035157	
chr3	9035206	9038596	9035394	9037652	+	Cre03.g210289.t1.1	Cre03.g210289.t1.1		9035206,9035573	9035475,9038596	
chr3	9038646	9042232	9038732	9042009	+	Cre03.g210401.t1.1	Cre03.g210401.t1.1		9038646,9039467,9040351,9040589,9041200,9041491	9038878,9039539,9040435,9040738,9041304,9042232	
chr3	9042344	9046301	9042441	9045834	+	Cre03.g210513.t1.1	Cre03.g210513.t1.1		9042344,9042762,9043111,9043477,9043853,9044194,9044463,9044781,9045234,9045680	9042475,9042816,9043289,9043591,9043983,9044310,9044583,9045037,9045378,9046301	
chr3	9047041	9062827	9047256	9061960	+	Cre03.g210625.t1.1	Cre03.g210625.t1.1		9047041,9047625,9047821,9048080,9048366,9048784,9049412,9049704,9050006,9050378,9050620,9051100,9051535,9052065,9052326,9052567,9053010,9053299,9053859,9054419,9054763,9055234,9055396,9056333,9056758,9057187,9057688,9057968,9058286,9058695,9058919,9059361,9060618,9061060,9061596,9061960	9047535,9047720,9047875,9048151,9048602,9049160,9049556,9049798,9050206,9050451,9050884,9051285,9051738,9052146,9052384,9052791,9053063,9053632,9054176,9054484,9054976,9055270,9055434,9056477,9056876,9057340,9057764,9058142,9058437,9058751,9059163,9059431,9060697,9061215,9061819,9062827	
chr3	9066366	9071386	9067376	9070419	+	Cre03.g210737.t1.1	Cre03.g210737.t1.1		9066366,9066849,9067651,9068742	9066729,9067417,9068329,9071386	
chr3	9072206	9083252	9072327	9082041	+	Cre03.g210849.t1.1	Cre03.g210849.t1.1		9072206,9072695,9073093,9073801,9075152,9076841,9077280,9078047,9078432,9078942,9079395,9079939,9080310,9080684,9081039,9081398	9072615,9072798,9073309,9074703,9076606,9077005,9077842,9078113,9078766,9079111,9079558,9080084,9080372,9080768,9081097,9083252	
chr3	9085160	9088597	9085257	9087624	+	Cre03.g210961.t1.1	Cre03.g210961.t1.1		9085160,9085510,9085853,9086159,9086470,9086769,9087046,9087380	9085400,9085560,9085978,9086244,9086537,9086870,9087134,9088597	
chr3	9088780	9093865	9090853	9093510	-	Cre03.g211073.t1.1	Cre03.g211073.t1.1		9093452,9091907,9091673,9091322,9088780	9093865,9093319,9091755,9091528,9091162	null-allele mutant was isolated (PMID 29743196)
chr3	9094655	9100097	9094823	9099043	+	Cre03.g211185.t1.1	Cre03.g211185.t1.1		9094655,9095722,9097198,9097590,9098425	9095591,9096906,9097293,9098240,9100097	null-allele mutant was isolated (PMID 29743196)
chr3	9100100	9103105	9100116	9103030	-	Cre03.g211297.t1.1	Cre03.g211297.t1.1		9102499,9102169,9101939,9100100	9103105,9102300,9101993,9101702	
chr3	9103308	9106565	9104000	9106412	-	Cre03.g211409.t1.1	Cre03.g211409.t1.1		9105418,9105154,9104815,9104215,9103308	9106565,9105255,9104975,9104443,9104065	
chr3	9109472	9115202	9109744	9114211	+	FAP165	Cre03.g211521.t1.1		9109472,9110114,9110494,9111537,9112203,9112676,9113173,9113787,9114124	9109892,9110177,9110608,9111667,9112424,9112790,9113235,9113849,9115202	May contain additional coding sequence in intronic N-island PMID: 27175017
chr3	9115266	9120417	9115339	9120031	+	Cre03.g211633.t1.1	Cre03.g211633.t1.1		9115266,9116086,9116527,9117036,9117369,9117617,9117980,9118269,9118737,9119102,9119547,9119813	9115864,9116349,9116810,9117101,9117420,9117727,9118020,9118494,9118881,9119322,9119622,9120417	
chr3	9120429	9129525	9121169	9129468	-	Cre03.g211745.t1.1	Cre03.g211745.t1.1		9129283,9128603,9127597,9127184,9126161,9125790,9125552,9125123,9124636,9123298,9122786,9122451,9122078,9121667,9120429	9129525,9128659,9127687,9127281,9126274,9125859,9125605,9125243,9124765,9123363,9123089,9122601,9122121,9121821,9121329	
chr3	9129676	9137287	9129851	9135217	+	Cre03.g211857.t1.1	Cre03.g211857.t1.1		9129676,9130997,9131327,9131799,9132706,9133715	9130709,9131092,9131381,9132397,9132760,9137287	
chr3	9137336	9143107	9137458	9141684	+	Cre03.g211969.t1.1	Cre03.g211969.t1.1		9137336,9139563,9139938,9140266	9139288,9139685,9139992,9143107	null-allele mutant was isolated (PMID 29743196)
chr3	9143686	9149626	9144634	9147418	+	Cre03.g212081.t1.1	Cre03.g212081.t1.1		9143686,9144594,9144815,9145556	9144444,9144648,9145290,9149626	
chr3	9149630	9150485	9150234	9150418	-	Cre03.g212193.t1.1	Cre03.g212193.t1.1		9149630	9150485	
chr3	9151301	9159687	9151526	9159246	+	FAP181	Cre03.g212305.t1.1		9151301,9151626,9152597,9153440,9153871,9154525,9154882,9155222,9155542,9156087,9156818,9157156,9157450,9157892,9158351,9158740,9159147	9151529,9152327,9153004,9153532,9154149,9154641,9154974,9155317,9155718,9156266,9156933,9157210,9157521,9157984,9158491,9158811,9159687	Flagellar Associated coiled-coil Protein, found in the flagellar proteome [PMID: 15998802]
chr3	9159776	9163007	9159884	9162408	+	Cre03.g212417.t1.1	Cre03.g212417.t1.1		9159776,9160317,9160656,9160921	9160169,9160415,9160710,9163007	
chr3	9163066	9165207	9163108	9164752	+	Cre03.g212529.t1.1	Cre03.g212529.t1.1		9163066,9163237,9163968,9164279,9164477	9163114,9163773,9164093,9164333,9165207	
chr3	9165307	9171075	9166925	9170710	-	Cre03.g212641.t1.1	Cre03.g212641.t1.1		9170680,9170273,9169832,9169292,9167402,9165307	9171075,9170320,9169975,9169489,9168989,9167233	
chr3	9165307	9171075	9166925	9170710	-	Cre03.g212641.t2.1	Cre03.g212641.t2.1		9170680,9170273,9169832,9169292,9167402,9165307	9171075,9170320,9169975,9169489,9168938,9167233	
chr3	9172434	9178419	9173873	9178237	-	Cre03.g212753.t1.1	Cre03.g212753.t1.1		9178185,9177984,9177390,9177010,9176458,9175934,9175563,9175067,9174452,9172434	9178419,9178023,9177513,9177033,9176628,9175984,9175603,9175235,9174907,9174062	
chr3	9179130	9187572	9179301	9186640	+	Cre03.g212865.t1.1	Cre03.g212865.t1.1		9179130,9179884,9180989,9181593,9182333,9183259,9183968,9184571,9185168,9185784,9186463	9179309,9180471,9181304,9182100,9182406,9183529,9184161,9184863,9185327,9186287,9187572	
chr3	9188300	9193749	9188436	9191496	+	Cre03.g212977.t1.1	Cre03.g212977.t1.1		9188300,9188886,9189519	9188614,9189112,9193749	
chr3	9194416	9199189	9196801	9198681	-	Cre03.g213089.t1.1	Cre03.g213089.t1.1		9198666,9198443,9197120,9194416	9199189,9198472,9198214,9196888	
chr3	9199395	9205919	9199688	9205498	-	CCS2	Cre03.g213201.t1.1		9205447,9203127,9201541,9200365,9199395	9205919,9205259,9202965,9201309,9200150	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; mutant lacks cytochrome b6f and cytochrome c6 and shows reduced accumulation of Ccs1 protein; CDS should be extended by 48 codons at 5'-end to match gb|AGD80573.1
chr3	9205968	9210189	9206449	9210035	-	Cre03.g213313.t1.1	Cre03.g213313.t1.1		9209869,9209425,9208960,9208428,9207983,9207616,9205968	9210189,9209510,9209110,9208590,9208187,9207665,9206594	
chr3	9210290	9213062	9210511	9212482	+	COX23	Cre03.g213425.t1.1		9210290,9210673,9210978,9211458,9211944,9212371	9210532,9210764,9211056,9211552,9212016,9213062	Similar to yeast mitochondrial intermembrane space protein that functions in mitochondrial copper homeostasis, essential for functional cytochrome oxidase expression; homologous to Cox17p; Cox23p putative cytochrome c oxidase assembly factor 23; PMID: 157
chr3	9213630	9216053	9213892	9214985	+	Cre03.g213537.t1.1	Cre03.g213537.t1.1		9213630,9213889,9214041,9214282,9214413,9214628,9214941	9213803,9213960,9214189,9214338,9214492,9214721,9216053	
chr3	9216995	9219386	9217405	9219386	-	Cre03.g213649.t1.1	Cre03.g213649.t1.1		9219188,9218394,9217880,9216995	9219386,9218717,9218068,9217680	
chr4	1853500	1854541	1853530	1854393	+	Cre04.g211599.t1.2	Cre04.g211599.t1.2		1853500,1853896,1854159	1853663,1853957,1854541	
chr4	1853520	1854541	1853926	1854393	+	Cre04.g211599.t2.1	Cre04.g211599.t2.1		1853520,1853896,1854148	1853663,1853957,1854541	
chr4	1840584	1853179	1842647	1852626	-	SNF1	Cre04.g211600.t1.1		1852488,1851997,1849991,1849672,1849172,1848786,1848204,1847720,1847261,1846934,1845412,1844981,1844407,1844162,1843712,1843032,1840584	1853179,1852090,1850100,1849763,1849263,1848859,1848372,1847841,1847311,1847052,1845494,1845141,1844575,1844227,1843797,1843124,1842716	
chr4	1835110	1840561	1835237	1839460	+	Cre04.g211650.t1.2	Cre04.g211650.t1.2		1835110,1835439,1835644,1836188,1836472,1836871,1837286,1838071,1838795,1839235	1835352,1835475,1835719,1836241,1836537,1836915,1837302,1838157,1838873,1840561	
chr4	1835110	1840252	1835237	1839460	+	Cre04.g211650.t2.1	Cre04.g211650.t2.1		1835110,1835439,1835644,1836188,1836472,1836871,1837286,1838071,1838795,1839235	1835352,1835475,1835719,1836241,1836537,1836915,1837302,1838157,1838873,1840252	
chr4	1830256	1833339	1830957	1833226	-	Cre04.g211700.t1.1	Cre04.g211700.t1.1		1832078,1830256	1833339,1831708	
chr4	1824884	1830209	1826518	1829987	-	Cre04.g211750.t1.1	Cre04.g211750.t1.1		1829679,1829413,1829194,1828692,1828037,1827279,1826899,1824884	1830209,1829565,1829281,1828859,1828153,1827398,1826978,1826678	
chr4	1820838	1822129	1820864	1821698	-	RPL23	Cre04.g211800.t1.2		1821777,1821472,1821020,1820838	1822129,1821699,1821218,1820864	Cytosolic 60S large ribosomal subunit protein L23
chr4	1814890	1818023	1814969	1817120	+	ELIP5	Cre04.g211850.t1.2		1814890,1815697,1816087,1816483,1817017	1815107,1815883,1816154,1816697,1818023	belongs to chlorophyll A-B binding protein superfamily
chr4	1801454	1814769	1801946	1814669	-	ELG37	Cre04.g211900.t1.1		1814524,1814056,1813405,1812823,1812171,1811732,1811334,1810882,1810348,1810038,1809496,1809129,1808128,1807527,1807160,1806704,1806130,1805606,1805224,1804747,1803221,1801454	1814769,1814197,1813516,1812909,1812286,1811822,1811475,1810969,1810481,1810095,1809616,1809194,1808441,1807616,1807216,1806792,1806209,1805656,1805363,1804876,1803858,1801946	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr4	1794843	1801407	1795573	1801054	-	ELG32	Cre04.g211950.t1.1		1801049,1800471,1800089,1799440,1799003,1798571,1798211,1797712,1794843	1801407,1800560,1800145,1799528,1799082,1798621,1798350,1797849,1795573	
chr4	1793810	1794811	1794089	1794547	+	Cre04.g212000.t1.2	Cre04.g212000.t1.2		1793810,1794314	1794180,1794811	
chr4	1782024	1793709	1783238	1793530	-	Cre04.g212050.t1.1	Cre04.g212050.t1.1		1793329,1792893,1792114,1791522,1790893,1790521,1789920,1789007,1788548,1788106,1787402,1786924,1786344,1782024	1793709,1793026,1792666,1791872,1791012,1790595,1790177,1789145,1788603,1788207,1787837,1787060,1786629,1786015	
chr4	1776680	1781991	1776779	1780967	+	Cre04.g212100.t1.1	Cre04.g212100.t1.1		1776680,1777638,1777974,1779592,1780834	1777002,1777707,1779120,1780367,1781991	
chr4	1768314	1776509	1770546	1775743	-	Cre04.g212150.t1.1	Cre04.g212150.t1.1		1776221,1775574,1774901,1774612,1773709,1773391,1773073,1772872,1772642,1772327,1771966,1771274,1770896,1768314	1776509,1775780,1775022,1774782,1773782,1773556,1773231,1772955,1772749,1772392,1772073,1771490,1771044,1770639	
chr4	1758902	1766389	1760192	1766318	-	Cre04.g212200.t1.1	Cre04.g212200.t1.1		1766131,1765274,1764576,1764290,1762548,1762235,1761913,1761713,1761488,1761184,1760803,1758902	1766389,1765480,1764697,1764457,1762621,1762400,1762071,1761796,1761595,1761246,1760910,1760435	null-allele mutant was isolated (PMID 29743196)
chr4	1758902	1766389	1760192	1765446	-	Cre04.g212200.t2.1	Cre04.g212200.t2.1		1766165,1765274,1764576,1764290,1762548,1762235,1761913,1761713,1761488,1761184,1760803,1758902	1766389,1765480,1764697,1764457,1762621,1762400,1762071,1761796,1761595,1761246,1760910,1760435	null-allele mutant was isolated (PMID 29743196)
chr4	1750890	1758721	1751115	1757260	+	Cre04.g212250.t1.1	Cre04.g212250.t1.1		1750890,1751275,1751673,1752370,1752672,1753172,1753645,1754265,1754942,1755685,1756190,1757027	1751166,1751423,1751787,1752435,1752717,1753265,1754145,1754364,1755094,1755747,1756334,1758721	
chr4	1740730	1750791	1740841	1749683	+	Cre04.g212300.t1.1	Cre04.g212300.t1.1		1740730,1741010,1742755,1743756,1744273,1744751,1745672,1746167,1747080,1747679,1748069,1748430,1749099,1749461	1740937,1742224,1742865,1743818,1744453,1744983,1745794,1746616,1747292,1747725,1748203,1748490,1749191,1750791	
chr4	1738270	1740681	1738356	1739492	+	Cre04.g212350.t1.2	Cre04.g212350.t1.2		1738270,1738939,1739205,1739413	1738477,1738985,1739272,1740681	
chr4	1734234	1738169	1734493	1738111	-	UBC15	Cre04.g212400.t1.1		1736131,1735735,1735290,1734765,1734234	1738169,1735933,1735519,1734983,1734526	
chr4	1727634	1734169	1728572	1734111	-	Cre04.g212401.t1.2	Cre04.g212401.t1.2		1733820,1733279,1732560,1732157,1731731,1731294,1730946,1730381,1729860,1729384,1728891,1727634	1734169,1733501,1732899,1732293,1731821,1731390,1731011,1730449,1729925,1729513,1729210,1728638	
chr4	1724650	1727509	1726283	1727409	-	Cre04.g212450.t1.2	Cre04.g212450.t1.2		1724650	1727509	
chr4	1718694	1724365	1719451	1724259	-	CGL42	Cre04.g212500.t1.2		1724118,1723792,1723326,1722974,1722443,1721888,1721567,1721256,1721015,1720641,1720142,1718694	1724365,1723836,1723413,1723043,1722531,1721958,1721592,1721335,1721089,1720702,1720211,1719600	
chr4	1712570	1718520	1712841	1717151	+	TTL7	Cre04.g212550.t1.1		1712570,1712968,1713384,1714448,1714607,1714926,1715712,1716500	1712847,1713173,1714044,1714499,1714640,1715187,1716191,1718520	
chr4	1709460	1712452	1709710	1711910	+	Cre04.g212600.t1.2	Cre04.g212600.t1.2		1709460,1709985,1710155,1710909,1711246,1711613	1709862,1710033,1710208,1710950,1711329,1712452	
chr4	1705134	1709329	1705738	1708895	-	Cre04.g212650.t1.2	Cre04.g212650.t1.2		1708847,1708607,1708018,1707554,1707098,1706887,1706587,1706161,1705134	1709329,1708676,1708117,1707620,1707195,1706974,1706661,1706324,1705874	
chr4	1690670	1703800	1692264	1703599	-	Cre04.g212700.t1.1	Cre04.g212700.t1.1		1703508,1703358,1703193,1702752,1702256,1701873,1700827,1700372,1699015,1698658,1698171,1697804,1697423,1696800,1696432,1695745,1695116,1694618,1694121,1693449,1690670	1703800,1703407,1703228,1702885,1702486,1701981,1701651,1700557,1700136,1698774,1698395,1697912,1697517,1697092,1696566,1695893,1695408,1694748,1694365,1693699,1693230	
chr4	1681345	1685650	1682532	1685543	-	Cre04.g212800.t1.1	Cre04.g212800.t1.1		1685415,1685143,1684663,1684309,1683666,1683235,1681345	1685650,1685343,1684873,1684527,1684165,1683505,1683015	
chr4	1685831	1688819	1686026	1688191	+	Cre04.g212801.t1.1	Cre04.g212801.t1.1		1685831,1686821,1687035,1687407,1687782,1688050	1686634,1686894,1687273,1687601,1687853,1688819	
chr4	1677195	1681290	1679478	1680881	-	Cre04.g212850.t1.2	Cre04.g212850.t1.2		1680612,1680181,1677195	1681290,1680451,1679961	
chr4	1671801	1677163	1672402	1675491	+	Cre04.g212900.t1.2	Cre04.g212900.t1.2		1671801,1672510,1673268,1673839,1674327,1674743,1675286,1675465	1672442,1673079,1673561,1674173,1674574,1674963,1675342,1677163	
chr4	1654832	1663930	1655767	1663348	-	Cre04.g213000.t1.2	Cre04.g213000.t1.2		1663293,1662686,1662364,1659928,1659147,1658761,1658435,1658082,1657798,1657231,1656699,1656416,1654832	1663930,1662834,1662460,1659980,1659291,1658844,1658548,1658134,1657902,1657371,1656812,1656511,1656148	
chr4	1654832	1660130	1655767	1660080	-	Cre04.g213000.t2.1	Cre04.g213000.t2.1		1660070,1659928,1659147,1658761,1658435,1658082,1657798,1657231,1656699,1656416,1654832	1660130,1659980,1659291,1658844,1658548,1658134,1657902,1657371,1656812,1656511,1656148	
chr4	1666581	1669500	1667341	1667603	+	Cre04.g213002.t1.1	Cre04.g213002.t1.1		1666581	1669500	
chr4	1651481	1654722	1651588	1653756	+	Cre04.g213050.t1.2	Cre04.g213050.t1.2		1651481,1651974,1652288,1652842,1653231,1653582	1651817,1652055,1652369,1652936,1653306,1654722	
chr4	1647562	1651370	1647797	1651252	-	CGLD7	Cre04.g213100.t1.1		1651078,1650866,1650558,1650025,1649669,1649293,1649018,1648496,1648142,1647562	1651370,1650931,1650663,1650145,1649836,1649382,1649068,1648601,1648207,1647854	Conserved in the Green Lineage and Diatoms
chr4	1610025	1617147	1611320	1617099	-	Cre04.g213150.t1.2	Cre04.g213150.t1.2		1617092,1616883,1616056,1615665,1615382,1614888,1614558,1614036,1613581,1613143,1612841,1612351,1610025	1617147,1616935,1616200,1615714,1615429,1614987,1614634,1614116,1613721,1613256,1612933,1612695,1611638	May contain additional coding sequence PMID: 27175017
chr4	1646365	1647379	1646792	1647093	-	Cre04.g213152.t1.1	Cre04.g213152.t1.1		1646365	1647379	
chr4	1594855	1600860	1595462	1600762	-	Cre04.g213250.t1.2	Cre04.g213250.t1.2		1600707,1600286,1600046,1599554,1599086,1598757,1598138,1597538,1597345,1596874,1594855	1600860,1600386,1600116,1599641,1599166,1598802,1598259,1597677,1597390,1596972,1595612	May contain additional coding sequence in intronic N-island PMID: 27175017
chr4	1606535	1609490	1606700	1609424	-	Cre04.g213251.t1.1	Cre04.g213251.t1.1		1609336,1608994,1608193,1607589,1606808,1606535	1609490,1609136,1608376,1607726,1606902,1606712	
chr4	1587984	1594440	1590131	1594244	-	Cre04.g213300.t1.2	Cre04.g213300.t1.2		1593527,1591748,1591089,1590743,1590408,1587984	1594440,1592293,1591363,1590800,1590592,1590204	null-allele mutant was isolated (PMID 29743196)
chr4	1573506	1587790	1575459	1587452	-	Cre04.g213350.t1.1	Cre04.g213350.t1.1		1587311,1587046,1586289,1586024,1582015,1581732,1581416,1580584,1573506	1587790,1587169,1586899,1586119,1585889,1581865,1581574,1581122,1580418	
chr4	1567091	1572898	1567914	1572372	+	SUB7	Cre04.g213400.t1.2		1567091,1567907,1568246,1568779,1569212,1569387,1569760,1570046,1570426,1570793,1571141,1571528,1572243	1567802,1568113,1568504,1568919,1569263,1569432,1569882,1570119,1570483,1570907,1571238,1571853,1572898	null-allele mutant was isolated (PMID 29743196)
chr4	1562211	1566432	1562505	1565260	+	VPS2A	Cre04.g213450.t1.2		1562211,1562504,1563080,1563707,1564087,1564707,1565125	1562398,1562634,1563184,1563757,1564218,1564784,1566432	Expressed Protein. Similar to yeast Vps2p/Did4p, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes)
chr4	1557855	1562080	1558194	1561932	-	Cre04.g213500.t1.1	Cre04.g213500.t1.1		1561845,1561469,1561139,1560731,1560267,1559871,1559511,1557855	1562080,1561612,1561204,1560784,1560425,1560019,1559593,1558982	
chr4	1528091	1530820	1528360	1530191	+	Cre04.g213650.t1.2	Cre04.g213650.t1.2		1528091	1530820	
chr4	1531031	1557352	1531223	1556877	+	Cre04.g213652.t1.1	Cre04.g213652.t1.1		1531031,1531696,1531925,1532170,1532709,1533868,1534987,1535672,1537184,1537872,1538337,1539562,1539955,1540387,1540667,1541861,1542285,1544496,1545595,1546305,1546737,1553678,1554324,1554601,1554845,1555336,1555863,1556343,1556696	1531475,1531767,1531983,1532554,1533488,1534726,1535511,1536985,1537322,1537947,1538400,1539695,1540032,1540471,1540895,1542053,1543580,1544885,1545714,1546463,1553506,1554145,1554377,1554659,1554888,1555433,1555949,1556432,1557352	null-allele mutant was isolated (PMID 29743196)
chr4	1511691	1518696	1512116	1518174	-	Cre04.g213750.t1.1	Cre04.g213750.t1.1		1518390,1517716,1517106,1516581,1516044,1515666,1515091,1514739,1512902,1512506,1511691	1518696,1518213,1517526,1516691,1516328,1515857,1515411,1514853,1514511,1512610,1512254	
chr4	1511691	1518696	1512116	1518174	-	Cre04.g213750.t2.1	Cre04.g213750.t2.1		1518386,1517716,1517106,1516581,1516044,1515666,1515091,1514739,1512902,1512506,1511691	1518696,1518213,1517526,1516691,1516328,1515857,1515411,1514853,1514511,1512610,1512254	
chr4	1520461	1526666	1521196	1526359	-	Cre04.g213751.t1.1	Cre04.g213751.t1.1		1526314,1525953,1523436,1520461	1526666,1526078,1525723,1523363	null-allele mutant was isolated (PMID 29743196)
chr4	11896	16495	12046	15354	+	Cre04.g213761.t1.1	Cre04.g213761.t1.1		11896,12367,13255,13522,14322,14458,14688,14962,15284	12110,12545,13324,13630,14361,14523,14767,15033,16495	null-allele mutant was isolated (PMID 29743196)
chr4	11896	16495	12046	15038	+	Cre04.g213761.t2.1	Cre04.g213761.t2.1		11896,12367,13255,13522,14322,14458,14688,14962	12110,12545,13324,13630,14361,14523,14767,16495	null-allele mutant was isolated (PMID 29743196)
chr4	1505761	1511636	1507265	1511326	-	Cre04.g213800.t1.1	Cre04.g213800.t1.1		1511306,1511122,1510872,1510600,1510026,1508961,1508524,1508292,1507448,1505761	1511636,1511180,1510953,1510666,1510290,1509826,1508717,1508331,1507906,1507301	
chr4	16546	24297	16733	22580	+	Cre04.g213873.t1.1	Cre04.g213873.t1.1		16546,16821,17092,17283,17786,18650,18962,21639,22001	16736,17012,17157,17589,18438,18774,21471,21790,24297	
chr4	1489701	1492326	1490348	1492247	-	Cre04.g213900.t1.2	Cre04.g213900.t1.2		1492105,1491657,1491280,1489701	1492326,1492024,1491435,1491026	
chr4	1492427	1498948	1492626	1498676	+	Cre04.g213904.t1.1	Cre04.g213904.t1.1		1492427,1492984,1493588,1494001,1494393,1494940,1495289,1495725,1496232,1496621,1496941,1497323,1497779,1498391	1492798,1493069,1493665,1494130,1494490,1495038,1495341,1495830,1496284,1496672,1496996,1497404,1497925,1498948	
chr4	1498997	1505485	1499018	1504435	+	Cre04.g213905.t1.1	Cre04.g213905.t1.1		1498997,1499516,1499687,1500072,1500467,1500748,1501030,1501361,1501830,1502145,1502762,1504294	1499392,1499570,1499782,1500095,1500526,1500846,1501149,1501453,1501922,1502478,1503177,1505485	ts-lethal mutant was isolated (PMID 29743196)
chr4	1498997	1505485	1499018	1503585	+	Cre04.g213905.t2.1	Cre04.g213905.t2.1		1498997,1499516,1499687,1500072,1500467,1500748,1501030,1501361,1501830,1502145,1502762,1503483	1499392,1499570,1499782,1500095,1500526,1500846,1501149,1501453,1501922,1502478,1503177,1505485	ts-lethal mutant was isolated (PMID 29743196)
chr4	1477727	1489596	1479022	1488867	-	SRR23	Cre04.g213950.t1.1		1488734,1488222,1487885,1487451,1486802,1486508,1486128,1484012,1483001,1482536,1481957,1481346,1480765,1480529,1477727	1489596,1488454,1488068,1487748,1487151,1486630,1486262,1485858,1483822,1482643,1482283,1481675,1481148,1480589,1480338	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr4	24300	27733	24989	27594	-	Cre04.g213985.t1.1	Cre04.g213985.t1.1		27525,27199,26916,26737,26407,26150,25951,25754,25346,25153,24300	27733,27276,26961,26785,26453,26228,26037,25831,25388,25205,25044	
chr4	1464537	1477658	1465317	1476295	+	Cre04.g214000.t1.1	Cre04.g214000.t1.1		1464537,1466039,1467444,1468399,1468949,1469344,1469724,1471792,1472801,1473146,1473733,1474266,1474828,1475078	1465917,1466210,1467720,1468760,1469080,1469478,1471558,1472568,1472908,1473472,1474062,1474649,1474888,1477658	
chr4	1457807	1463570	1457839	1462843	+	SULTR4	Cre04.g214050.t1.2		1457807,1458324,1458530,1459019,1459536,1459963,1461081,1461483,1461865,1462197,1462662	1457959,1458378,1458624,1459180,1459665,1460324,1461229,1461609,1461966,1462273,1463570	putative sulfate transporter of the MFS type; orthologous to At1g80310 and At2g25680; probably plasma membrane
chr4	29040	40805	29590	40547	-	Cre04.g214097.t1.1	Cre04.g214097.t1.1		40418,40050,39676,39208,38728,38371,37904,37564,37024,36419,36114,35895,35537,35000,34684,34316,33202,32948,32409,32110,31865,31528,31211,30796,30370,29946,29040	40805,40123,39804,39409,38778,38451,38100,37648,37320,36512,36193,35973,35679,35133,34723,34343,33287,33051,32509,32234,31916,31567,31313,30963,30570,30056,29776	
chr4	1455598	1457682	1456006	1457498	-	SIRB	Cre04.g214100.t1.2		1457360,1457070,1456760,1456450,1455598	1457682,1457223,1456833,1456525,1456134	Involved in siroheme biosynthesis
chr4	1450887	1454996	1452300	1454516	+	THI4	Cre04.g214150.t1.1		1450887,1452284,1452714,1453091,1453395,1453621,1454004,1454324	1451276,1452519,1452848,1453204,1453478,1453840,1454113,1454996	regulatory protein involved in the synthesis of the thiazole moiety of thiamine pyrophosphate; contains riboswitch THI RNA motif
chr4	1436629	1450786	1437258	1450008	-	Cre04.g214200.t1.1	Cre04.g214200.t1.1		1450269,1449199,1448992,1448628,1448188,1447721,1447320,1447034,1446455,1445859,1445555,1444999,1444645,1444283,1443737,1443426,1443108,1442910,1442536,1441226,1440879,1440536,1439264,1438368,1438013,1436629	1450786,1450032,1449049,1448710,1448290,1447833,1447578,1447130,1446512,1446165,1445680,1445077,1444768,1444409,1443879,1443502,1443217,1442959,1442584,1442280,1440937,1440654,1440319,1438961,1438111,1437624	
chr4	42506	43607	42561	43342	+	Cre04.g214209.t1.1	Cre04.g214209.t1.1		42506	43607	
chr4	1422517	1436368	1422654	1435409	+	AGO2	Cre04.g214250.t1.1		1422517,1422763,1423333,1423705,1424377,1424928,1425212,1425929,1426494,1426896,1427528,1428117,1428451,1428964,1429558,1430484,1430675,1431367,1431951,1432328,1432837,1433074,1433687,1434097,1434820,1435262	1422676,1422804,1423521,1423802,1424505,1424976,1425465,1426105,1426580,1427030,1427713,1428220,1428570,1429072,1429727,1430550,1430950,1431447,1432066,1432579,1432900,1433216,1433777,1434209,1434886,1436368	Presumably involved in posttranscriptional gene silencing/RNA interference; more similar to other Chlamydomonas than to any plant AGO genes.
chr4	1422517	1436368	1422654	1435409	+	AGO2	Cre04.g214250.t2.1		1422517,1422763,1423333,1423705,1424377,1424928,1425212,1425929,1426896,1427528,1428117,1428451,1428964,1429558,1430484,1430675,1431367,1431951,1432328,1432837,1433074,1433687,1434097,1434820,1435262	1422676,1422804,1423521,1423802,1424505,1424976,1425465,1426105,1427030,1427713,1428220,1428570,1429072,1429727,1430550,1430950,1431447,1432066,1432579,1432900,1433216,1433777,1434209,1434886,1436368	Presumably involved in posttranscriptional gene silencing/RNA interference; more similar to other Chlamydomonas than to any plant AGO genes.
chr4	44766	54247	45373	54026	+	Cre04.g214321.t1.1	Cre04.g214321.t1.1		44766,45632,46019,46559,47046,47396,47677,48321,49775,50031,50397,51235,51788,53653	45455,45860,46172,46838,47281,47470,48134,49302,49826,50182,51013,51449,53498,54247	
chr4	1397761	1414296	1398197	1413842	-	POLA1	Cre04.g214350.t1.1		1413576,1413296,1412202,1411931,1411556,1411193,1410740,1410448,1410162,1409663,1409099,1408673,1408204,1407274,1407030,1406539,1406094,1405582,1405153,1404750,1404370,1404082,1403774,1403310,1402992,1402613,1402343,1401806,1401177,1400701,1400230,1399862,1399265,1398810,1397761	1414296,1413366,1413110,1411984,1411620,1411330,1410880,1410552,1410257,1409809,1409234,1408812,1408287,1407388,1407109,1406701,1406242,1405680,1405281,1404887,1404423,1404189,1403849,1403400,1403100,1402783,1402477,1402033,1401265,1400821,1400325,1399930,1399513,1398923,1398458	Homologous to eukaryotic DNA polymerase alpha catalytic subunit; Replication polymerase. Class B polymerase. ts-lethal mutants block in S/M (PMID 25336509)
chr4	1414497	1422164	1414709	1421276	+	Cre04.g214351.t1.1	Cre04.g214351.t1.1		1414497,1415732,1416257	1415450,1416088,1422164	null-allele mutant was isolated (PMID 29743196)
chr4	54285	58125	54849	57902	-	Cre04.g214433.t1.1	Cre04.g214433.t1.1		57404,56856,56586,55891,55529,55069,54285	58125,56927,56636,56198,55621,55336,54885	
chr4	1345270	1352944	1346849	1352810	-	IDH3	Cre04.g214500.t1.1		1352737,1352405,1352099,1351713,1350979,1350300,1350007,1349582,1349202,1348827,1348311,1347730,1347225,1345270	1352944,1352511,1352206,1351787,1351103,1350339,1350090,1349724,1349307,1348904,1348389,1347872,1347308,1346936	NADP specific isocitrate dehydrogenase (EC 1.1.1.42), mitochondrial precursor; similar to mammalian mitochondrial ICDH (e.g., GenBank XP_536192), predicted by Target-P to have an organellar targeting sequence (mitochondrial)
chr4	1353109	1366794	1354097	1366669	-	PNP1	Cre04.g214501.t1.1		1366381,1365538,1364749,1364415,1364051,1362869,1362424,1361930,1361504,1361071,1360555,1360145,1359902,1359527,1359204,1358776,1357978,1357543,1357129,1356673,1356246,1355900,1354926,1354618,1353109	1366794,1365646,1364815,1364457,1364122,1362956,1362515,1362025,1361569,1361171,1360729,1360159,1359964,1359620,1359287,1358862,1358102,1357590,1357275,1356729,1356296,1355998,1354988,1354668,1354283	Polyribonucleotide nucleotidyltransferase, Polyribonucleotide phosphorylase, PNPase; involved in the tailing and degradation of chloroplast transcripts; May contain additional coding sequence in intronic N-island PMID: 27175017
chr4	1366845	1372004	1367622	1371927	-	UGE	Cre04.g214502.t1.1		1371875,1371571,1371359,1371042,1370506,1369991,1369175,1368622,1368241,1368000,1366845	1372004,1371710,1371408,1371177,1370580,1370085,1369265,1368805,1368293,1368094,1367701	ts-lethal mutant has fragile cell membrane when poked with a needle at restrictive temperature (PMID 29743196)
chr4	1372105	1373976	1372343	1373680	+	Cre04.g214503.t1.1	Cre04.g214503.t1.1		1372105,1372296,1372680,1373179,1373554	1372198,1372354,1372814,1373329,1373976	
chr4	1372105	1373976	1372343	1373680	+	Cre04.g214503.t2.1	Cre04.g214503.t2.1		1372105,1372305,1372680,1373179,1373554	1372198,1372354,1372814,1373329,1373976	
chr4	1374577	1394618	1375488	1393569	+	Cre04.g214504.t1.1	Cre04.g214504.t1.1		1374577,1375484,1375673,1377239,1377813,1378021,1378994,1379367,1379909,1380216,1381486,1382308,1382922,1383674,1384342,1386684,1387150,1387926,1390707,1390986,1391965,1392944,1393407	1375365,1375535,1377048,1377453,1377897,1378242,1379173,1379569,1379951,1381223,1382144,1382533,1383350,1383891,1384449,1386758,1387455,1388261,1390752,1391407,1392189,1392982,1394618	
chr4	1394621	1397446	1395329	1397301	-	Cre04.g214505.t1.1	Cre04.g214505.t1.1		1396524,1395934,1394621	1397446,1396258,1395472	
chr4	58276	66707	58760	65916	+	Cre04.g214545.t1.1	Cre04.g214545.t1.1		58276,58904,59381,60613,65453	58768,59111,60364,65255,66707	
chr4	1343279	1345214	1343544	1344960	-	Cre04.g214550.t1.2	Cre04.g214550.t1.2		1344788,1344181,1343279	1345214,1344394,1343653	
chr4	1340855	1343254	1341134	1342305	+	Cre04.g214600.t1.1	Cre04.g214600.t1.1		1340855	1343254	
chr4	1335925	1340756	1336180	1340457	+	Cre04.g214612.t1.2	Cre04.g214612.t1.2		1335925,1337781,1338025,1338521,1340063,1340382	1336202,1337801,1338055,1338619,1340162,1340756	
chr4	1307865	1335878	1308239	1334991	+	GSL1	Cre04.g214650.t1.1		1307865,1308418,1308615,1309107,1309726,1310071,1311744,1311929,1312221,1312855,1313332,1313657,1314021,1314558,1314996,1315797,1316298,1316897,1317339,1317779,1318452,1318802,1319576,1320044,1320519,1320952,1321694,1322179,1322600,1323045,1323490,1323827,1324254,1324569,1325189,1325611,1325983,1326537,1327104,1327573,1327982,1328411,1328820,1329202,1329476,1329919,1330382,1330663,1331161,1331633,1332715,1333087,1333563,1333893,1334251,1334614,1334846	1308347,1308471,1308738,1309471,1309836,1311486,1311779,1312015,1312512,1313168,1313382,1313740,1314107,1314644,1315396,1316050,1316392,1316989,1317424,1318190,1318511,1318906,1319822,1320115,1320735,1321315,1321996,1322231,1322792,1323221,1323587,1323974,1324328,1324832,1325296,1325718,1326059,1326650,1327251,1327746,1328048,1328514,1328939,1329298,1329618,1330040,1330487,1330741,1331282,1331758,1332822,1333224,1333630,1333991,1334341,1334666,1335878	glycosyl transferase of GT48 family, possible 1,3-beta-D-glucan synthase
chr4	66766	78757	66845	78325	+	Cre04.g214657.t1.1	Cre04.g214657.t1.1		66766,67201,67749,68076,68449,69093,69392,69880,70353,70663,70990,71352,71599,72098,72504,73308,75051,75819,76163,76657,77888,78231	66861,67407,67852,68175,68790,69214,69497,70022,70406,70728,71079,71426,71680,72159,72605,74828,75608,75890,76321,77599,78128,78757	
chr4	1301225	1307636	1301353	1307307	+	Cre04.g214690.t1.2	Cre04.g214690.t1.2		1301225,1301548,1302368,1302900,1303265,1303831,1305664	1301416,1301630,1302708,1303083,1303501,1305437,1307636	
chr4	1294993	1301114	1295788	1300863	-	Cre04.g214700.t1.1	Cre04.g214700.t1.1		1300599,1299440,1298579,1297790,1297170,1294993	1301114,1300172,1299090,1298041,1297261,1296875	
chr4	1291400	1294144	1292238	1293659	-	VMP7	Cre04.g214750.t1.1		1293609,1293020,1292678,1291400	1294144,1293299,1292782,1292421	Expressed Protein. Contains R-SNARE domain distantly similar to VAMP4, not found in land plants. Part of 2 member gene family on same scaffold separated by one gene (<-VMPL1, IFM1, <-VMPL2)
chr4	78850	82605	80054	82264	-	Cre04.g214769.t1.1	Cre04.g214769.t1.1		82188,81539,81106,78850	82605,81660,81213,80870	
chr4	1286309	1289084	1287590	1289017	-	VMP6	Cre04.g214800.t1.2		1288967,1288491,1288174,1286309	1289084,1288701,1288278,1287827	Expressed Protein. Contains R-SNARE motif distantly similar to VAMP4, not found in land plants. Part of 2 member gene family on same scaffold separated by one gene (<-VMPL1, IFM1, <-VMPL2)
chr4	1289195	1291396	1289900	1291051	+	Cre04.g214801.t1.1	Cre04.g214801.t1.1		1289195,1290172,1290640,1290943	1289904,1290294,1290785,1291396	
chr4	1289195	1291396	1290694	1291051	+	Cre04.g214801.t2.1	Cre04.g214801.t2.1		1289195,1290172,1290640,1290943	1289904,1290294,1290811,1291396	
chr4	1289195	1291396	1290694	1291051	+	Cre04.g214801.t3.1	Cre04.g214801.t3.1		1289195,1290172,1290640,1290943	1289876,1290294,1290811,1291396	
chr4	1280485	1286307	1280625	1285538	+	Cre04.g214850.t1.2	Cre04.g214850.t1.2		1280485,1281713	1281042,1286307	null-allele mutant was isolated (PMID 29743196)
chr4	1276922	1280094	1277293	1279967	-	Cre04.g214900.t1.1	Cre04.g214900.t1.1		1279873,1279259,1278825,1278479,1277959,1276922	1280094,1279753,1278877,1278617,1278032,1277434	
chr4	1264061	1269344	1264832	1269215	-	BKT1	Cre04.g215000.t1.2		1268869,1268466,1268070,1267564,1267120,1266810,1266557,1265560,1264061	1269344,1268495,1268103,1267653,1267231,1266846,1266612,1265628,1265261	beta-carotene C-4 oxygenase (beta-carotene ketolase), putative chloroplast precursor (CBK) (crtW) [PMID: 15849308]
chr4	1269495	1276916	1269776	1276541	+	Cre04.g215001.t1.1	Cre04.g215001.t1.1		1269495,1271073,1271381,1272106,1272580,1273209,1273619	1270649,1271144,1271518,1272237,1272840,1273289,1276916	
chr4	1269495	1276916	1269776	1276541	+	Cre04.g215001.t2.1	Cre04.g215001.t2.1		1269495,1271381,1272106,1272580,1273209,1273619	1270649,1271518,1272237,1272840,1273289,1276916	
chr4	1258008	1263154	1260072	1263001	-	CHYB	Cre04.g215050.t1.2		1262845,1262410,1262044,1261371,1261027,1260465,1258008	1263154,1262486,1262206,1261559,1261140,1260557,1260174	beta-carotene hydroxylase (carotene beta-hydroxylase), putative chloroplast precursor (CBH) [PMID:15849308]
chr4	1252400	1255624	1252622	1255203	-	Cre04.g215100.t1.1	Cre04.g215100.t1.1		1255134,1254886,1254596,1254337,1253127,1252899,1252758,1252400	1255624,1255065,1254719,1254397,1254113,1252947,1252829,1252670	null-allele passenger mutation was isolated (PMID 29743196)
chr4	1242667	1252344	1244606	1252228	-	SSS1	Cre04.g215150.t1.2		1252141,1251722,1251239,1250537,1249971,1249625,1249253,1248311,1247930,1247456,1247258,1246843,1246746,1246233,1245614,1245160,1242667	1252344,1251925,1251358,1250608,1250264,1249674,1249337,1248459,1248023,1247548,1247293,1246952,1246781,1246316,1245728,1245231,1244705	ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase
chr4	1242667	1252344	1244606	1252228	-	SSS1	Cre04.g215150.t2.1		1252141,1251722,1251239,1250537,1249971,1249625,1249253,1248311,1247930,1247456,1247258,1246843,1246233,1245614,1245160,1242667	1252344,1251925,1251358,1250608,1250264,1249674,1249337,1248459,1248023,1247548,1247293,1246952,1246316,1245728,1245231,1244705	ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase
chr4	1239449	1242474	1240957	1242352	-	Cre04.g215200.t1.2	Cre04.g215200.t1.2		1242270,1241697,1241403,1239449	1242474,1241827,1241455,1241216	
chr4	1226319	1239334	1227134	1238918	-	FAP26	Cre04.g215250.t1.1		1238881,1238169,1237443,1237027,1236646,1235955,1234419,1231904,1231048,1230533,1230117,1229612,1229465,1229069,1228594,1228202,1227773,1226319	1239334,1238369,1237896,1237184,1236766,1236474,1235756,1234186,1231527,1230841,1230334,1229815,1229519,1229194,1228785,1228354,1227911,1227535	May contain additional coding sequence in exonic N-island PMID: 27175017
chr4	1217213	1225560	1217302	1224792	+	Cre04.g215350.t1.1	Cre04.g215350.t1.1		1217213,1217874,1218741,1219537,1220592,1221250,1221597,1222733,1223211	1217488,1217972,1218833,1219695,1220732,1221329,1221729,1222990,1225560	
chr4	1205219	1217084	1206199	1216301	-	AKC3	Cre04.g215400.t1.2		1216879,1215974,1215597,1214973,1214454,1213988,1213546,1212984,1212418,1212139,1211603,1211234,1210898,1210610,1209636,1209255,1208623,1208077,1207692,1207245,1206554,1205219	1217084,1216421,1215681,1215109,1214555,1214074,1213677,1213109,1212474,1212238,1211691,1211311,1210966,1210660,1209720,1209393,1208930,1208322,1207777,1207307,1206715,1206343	ABC1 kinase family protein of unknown function; similar to EYE3 (required for eyespot assembly); Arabidopsis homolog is predicted to be plastid-localized
chr4	1202735	1205216	1202922	1204510	+	Cre04.g215450.t1.2	Cre04.g215450.t1.2		1202735	1205216	
chr4	1191575	1202673	1192166	1202501	+	Cre04.g215500.t1.2	Cre04.g215500.t1.2		1191575,1191972,1192128,1192364,1192567,1192796,1193181,1193770,1194269,1194560,1194770,1195017,1195257,1195463,1195794,1196265,1196518,1196855,1197401,1198245,1198795,1199098,1199438,1200177,1200641,1201145,1201649	1191859,1192013,1192202,1192435,1192671,1192948,1193526,1194019,1194434,1194645,1194866,1195061,1195316,1195591,1195946,1196303,1196685,1197145,1198020,1198560,1198950,1199184,1199980,1200414,1200889,1201443,1202673	
chr4	1187839	1191434	1188589	1191146	-	Cre04.g215550.t1.2	Cre04.g215550.t1.2		1191044,1190731,1190313,1189982,1189451,1189039,1187839	1191434,1190876,1190469,1190107,1189769,1189260,1188735	
chr4	1183565	1187831	1183875	1187029	+	Cre04.g215600.t1.2	Cre04.g215600.t1.2		1183565,1184427,1184890,1185274,1185893,1186092,1186439,1186727,1186934	1183979,1184549,1184935,1185345,1185919,1186238,1186483,1186781,1187831	
chr4	1183746	1187831	1183875	1187029	+	Cre04.g215600.t2.1	Cre04.g215600.t2.1		1183746,1184427,1184890,1185274,1185893,1186092,1186439,1186727,1186934	1183979,1184549,1184935,1185345,1185919,1186238,1186483,1186781,1187831	
chr4	1179158	1182784	1179287	1181923	+	Cre04.g215650.t1.1	Cre04.g215650.t1.1		1179158,1179424,1179547,1179712,1179946,1180281,1180958,1181268,1181761	1179329,1179481,1179627,1179815,1180093,1180357,1181083,1181489,1182784	
chr4	1169740	1174805	1170149	1174506	-	Cre04.g215700.t1.2	Cre04.g215700.t1.2		1174135,1173854,1173549,1173209,1172915,1172581,1171910,1170497,1169740	1174805,1173904,1173681,1173335,1172996,1172728,1172170,1171772,1170343	
chr4	1175705	1179046	1175779	1177855	+	Cre04.g215702.t1.1	Cre04.g215702.t1.1		1175705,1176601,1177648	1176319,1177125,1179046	
chr4	1165622	1169738	1165872	1169143	+	Cre04.g215750.t1.2	Cre04.g215750.t1.2		1165622,1166287,1166869,1167237,1167596,1167922,1168323,1168663,1169056	1165998,1166417,1166951,1167417,1167684,1167995,1168410,1168832,1169738	
chr4	1154320	1165505	1154889	1165217	-	Cre04.g215800.t1.1	Cre04.g215800.t1.1		1165011,1164475,1164253,1163902,1163467,1163073,1162768,1162460,1162191,1161443,1161267,1161033,1160691,1159139,1158853,1158408,1158157,1157907,1157532,1157314,1156739,1156408,1154320	1165505,1164842,1164338,1164036,1163682,1163270,1162878,1162629,1162344,1162048,1161344,1161148,1160880,1160560,1159022,1158757,1158268,1158050,1157787,1157408,1157159,1156536,1156254	
chr4	1149926	1154316	1150132	1153081	+	IPA1	Cre04.g215850.t1.2		1149926,1150420,1150590,1150788,1151040,1151350,1151666,1151984,1152323,1152672,1152935	1150339,1150522,1150681,1150919,1151225,1151513,1151822,1152178,1152514,1152765,1154316	
chr4	1142656	1148777	1142820	1147515	+	Cre04.g215900.t1.1	Cre04.g215900.t1.1		1142656,1143515,1143899,1144245,1144663,1144885,1145509,1145911,1147309	1143341,1143622,1144031,1144371,1144747,1145032,1145769,1147180,1148777	
chr4	1132496	1139367	1132524	1137732	+	CYN57	Cre04.g215950.t1.1		1132496,1132711,1133179,1133556,1133808,1134067,1134346,1134630,1134969,1135543,1135952,1136430,1136725,1137087,1137289,1137630	1132566,1132773,1133293,1133622,1133859,1134174,1134473,1134797,1135117,1135726,1136189,1136557,1136848,1137158,1137408,1139367	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type with S/K-R/E RNA-binding domain; no targeting peptide, cytosolic; similar to AtCYP57
chr4	1141540	1142505	1141724	1142007	-	Cre04.g215952.t1.1	Cre04.g215952.t1.1		1141540	1142505	
chr4	1126992	1132385	1127349	1131883	-	Cre04.g216000.t1.2	Cre04.g216000.t1.2		1132261,1131631,1130802,1130534,1130010,1129678,1128560,1128271,1126992	1132385,1132084,1131482,1130651,1130401,1129805,1128868,1128427,1128006	
chr4	1110120	1125135	1110822	1124783	-	Cre04.g216050.t1.1	Cre04.g216050.t1.1		1124713,1122400,1122120,1121762,1121386,1120895,1119840,1119546,1119110,1115160,1113293,1110120	1125135,1124378,1122232,1121930,1121607,1121200,1120007,1119687,1119315,1118969,1115032,1113069	null-allele mutant was isolated (PMID 29743196)
chr4	1104426	1107517	1104454	1107232	+	Cre04.g216100.t1.1	Cre04.g216100.t1.1		1104426,1104685,1105043,1105357,1105667,1105871,1106028,1106342,1106809,1107160	1104530,1104818,1105107,1105426,1105693,1105903,1106073,1106432,1106872,1107517	
chr4	1107576	1110117	1107628	1109688	+	Cre04.g216102.t1.1	Cre04.g216102.t1.1		1107576,1108348	1108163,1110117	
chr4	1100161	1104325	1102161	1103929	-	Cre04.g216150.t1.2	Cre04.g216150.t1.2		1103844,1103695,1103418,1103154,1102871,1102471,1100161	1104325,1103757,1103503,1103239,1102967,1102593,1102305	
chr4	1082224	1089075	1085058	1088013	-	Cre04.g216200.t1.2	Cre04.g216200.t1.2		1088532,1087848,1087317,1086962,1086517,1086122,1085895,1085557,1082224	1089075,1088027,1087755,1087062,1086666,1086306,1085937,1085694,1085244	
chr4	1089130	1093035	1089793	1092355	-	FAP339	Cre04.g216203.t1.1		1092337,1092142,1091903,1091263,1090333,1089130	1093035,1092237,1092010,1091571,1090956,1089793	
chr4	1093090	1099835	1096089	1099044	-	Cre04.g216204.t1.1	Cre04.g216204.t1.1		1098879,1098348,1097993,1097548,1097153,1096926,1096588,1093090	1099835,1098786,1098093,1097697,1097337,1096968,1096725,1096275	
chr4	1079409	1081805	1080722	1081548	-	FAP276	Cre04.g216250.t1.2		1081530,1081335,1081096,1079409	1081805,1081430,1081203,1080764	Flagellar Associated Protein, found in the flagellar proteome
chr4	1074728	1077556	1074830	1076984	+	Cre04.g216300.t1.2	Cre04.g216300.t1.2		1074728,1075280,1076497,1076849	1075085,1075358,1076561,1077556	
chr4	1070735	1074635	1071040	1074298	-	CPLD3	Cre04.g216350.t1.2		1074223,1073547,1073291,1072982,1072681,1072452,1072218,1071997,1071495,1071259,1070735	1074635,1073658,1073337,1073122,1072767,1072508,1072265,1072063,1071631,1071324,1071160	Aldo/keto reductase.  Conserved expressed protein.  Previously annotated as CPLD3
chr4	86021	91335	86436	91068	-	Cre04.g216500.t1.1	Cre04.g216500.t1.1		90071,89551,89154,88761,87347,86902,86021	91335,89672,89264,88874,88519,86983,86501	
chr4	91976	94986	92338	93463	+	Cre04.g216550.t1.2	Cre04.g216550.t1.2		91976,92682,93085	92540,92875,94986	
chr4	95070	101075	95845	100866	-	RPT6	Cre04.g216600.t1.2		100733,100582,99709,99324,99017,98703,98257,97911,97544,97146,96850,96329,95070	101075,100649,99777,99446,99079,98765,98420,98001,97609,97264,96924,96431,95899	26S proteasome regulatory complex, base subcomplex, ATPase RPT6 (subunit 8)
chr4	101206	106767	101434	105683	+	Cre04.g216650.t1.1	Cre04.g216650.t1.1		101206,102307,102612,102971,103387,104823,105243,105531	101818,102366,102680,103060,103677,104898,105290,106767	
chr4	106816	118977	106998	117849	+	PHO5	Cre04.g216700.t1.2		106816,107466,107807,108186,108406,108834,109100,109363,109710,110050,110385,110811,111248,111623,112021,112389,112732,112999,113334,113882,114213,114496,114902,115533,116028,116461,116799,117445,117774	107176,107602,107953,108249,108595,108954,109160,109469,109885,110155,110564,110930,111404,111777,112158,112473,112869,113119,113550,113976,114285,114695,115268,115713,116272,116572,117220,117552,118977	Major phosphate-repressible, calcium-dependent, secreted extracellular alkaline phosphatase [PMID: 8754684; PMID: 16400166] homolog of Volvox carteri PHOX [gi:4160586, PMID: 9880549].
chr4	119036	126231	119090	125753	+	Cre04.g216737.t1.1	Cre04.g216737.t1.1		119036,119567,119959,120298,121601,122153,122783,123493,124291,124979	119201,119725,120023,120466,121880,122270,123242,124107,124803,126231	
chr4	126366	131187	127644	130826	+	Cre04.g216774.t1.1	Cre04.g216774.t1.1		126366,127437,128383,128760,129107,129695,130654	127164,128142,128453,128928,129435,130291,131187	
chr4	131246	135107	131915	133209	+	Cre04.g216811.t1.2	Cre04.g216811.t1.2		131246,131837	131725,135107	
chr4	135726	140136	137153	139377	+	Cre04.g216826.t1.2	Cre04.g216826.t1.2		135726,136546,137111,138321	136423,136795,137759,140136	
chr4	135726	140136	137153	138991	+	Cre04.g216826.t2.1	Cre04.g216826.t2.1		135726,136546,137111,138321,138859	136423,136795,137759,138503,140136	
chr4	135726	138407	137153	137814	+	Cre04.g216826.t3.1	Cre04.g216826.t3.1		135726,136546,137111	136423,136795,138407	
chr4	141890	143545	142552	143397	-	Cre04.g216840.t1.1	Cre04.g216840.t1.1		143167,141890	143545,142552	
chr4	144030	147635	144151	147071	-	TUA2	Cre04.g216850.t1.2		147026,146564,144617,144030	147635,146786,146345,144151	GI:27358004; PMID: 3855249, PMID: 3460413, PMID: 14676280
chr4	148025	156095	148877	155884	-	Cre04.g216875.t1.1	Cre04.g216875.t1.1		155789,155523,155274,151722,149708,148025	156095,155617,155296,154973,151409,149383	
chr4	156145	163255	156797	162960	-	DAW1	Cre04.g216902.t1.1		162914,162684,162423,162011,161189,160261,159623,159051,158591,158372,157923,157641,157184,156145	163255,162769,162554,162103,161245,160353,159648,159211,158673,158425,158036,157715,157253,156919	Outer dynein arm assembly factor ODA16. WD repeat protein that interacts with IFT machinery; May contain additional coding sequence in intronic N-island PMID: 27175017
chr4	156145	163255	156797	162960	-	DAW1	Cre04.g216902.t2.1		162914,162684,162423,162011,161189,160580,160261,159051,158591,158372,157923,157641,157184,156145	163255,162769,162554,162103,161245,160590,160353,159211,158673,158425,158036,157715,157253,156919	Outer dynein arm assembly factor ODA16. WD repeat protein that interacts with IFT machinery; May contain additional coding sequence in intronic N-island PMID: 27175017
chr4	163403	169278	163493	168525	+	Cre04.g216950.t1.2	Cre04.g216950.t1.2		163403,164550,165180,165588,166178,166575,167083,167573,167989,168462	163895,164608,165236,165646,166318,166690,167121,167635,168114,169278	
chr4	170313	173800	171397	173712	-	Cre04.g216976.t1.1	Cre04.g216976.t1.1		173706,172535,172024,170313	173800,172818,172165,171646	
chr4	173941	187280	174299	184302	+	Cre04.g217000.t1.1	Cre04.g217000.t1.1		173941,175781,176228,176769,177414,179395,179950,181051,181378,182721,184143,184277	174407,175865,176514,176840,179120,179607,180528,181194,182508,183863,184213,187280	null-allele mutant was isolated (PMID 29743196)
chr4	187501	192761	187654	192183	+	Cre04.g217050.t1.1	Cre04.g217050.t1.1		187501,187948,188251,188551,188896,189383,190419	187725,188050,188278,188685,189159,190143,192761	null-allele mutant was isolated (PMID 29743196)
chr4	192821	198466	192975	197487	+	Cre04.g217100.t1.1	Cre04.g217100.t1.1		192821,193252,193696,194058,194437,194949	193040,193313,193768,194112,194802,198466	
chr4	198717	201740	198950	201639	-	Cre04.g217150.t1.1	Cre04.g217150.t1.1		201562,201368,200970,200767,199845,198717	201740,201421,201030,200813,200574,199562	
chr4	201794	206540	202389	206261	-	Cre04.g217200.t1.1	Cre04.g217200.t1.1		206193,205846,205683,205094,204630,203749,201794	206540,205903,205730,205382,204796,204328,203213	
chr4	208085	210410	209071	210299	-	Cre04.g217220.t1.1	Cre04.g217220.t1.1		209916,209445,208085	210410,209583,209071	
chr4	208085	210410	209071	210299	-	Cre04.g217220.t2.1	Cre04.g217220.t2.1		209916,209445,208085	210410,209580,209071	
chr4	208085	210410	208479	210299	-	Cre04.g217220.t3.1	Cre04.g217220.t3.1		209916,209445,208683,208085	210410,209583,209071,208479	
chr4	211731	212307	211788	212142	+	Cre04.g217240.t1.1	Cre04.g217240.t1.1		211731,211969	211843,212307	
chr4	215098	216385	215500	216247	-	Cre04.g217300.t1.2	Cre04.g217300.t1.2		216015,215098	216385,215934	
chr4	216829	225490	217359	225012	-	KUP4	Cre04.g217350.t1.2		225311,224949,224738,224370,223740,223457,223124,222670,222342,222073,221467,221064,219693,219196,218922,217846,216829	225490,225020,224860,224472,224204,223578,223223,222812,222457,222166,221598,221243,220613,219309,218981,218713,217541	Potassium ion uptake transporter, distantly linked to KUP5 gene encoding a similar protein
chr4	225735	237150	226218	236975	-	Cre04.g217400.t1.2	Cre04.g217400.t1.2		236796,236417,235924,235353,230710,230296,229523,228708,228125,227710,227363,226818,225735	237150,236546,236070,235544,234876,230520,229948,229216,228249,227780,227503,227009,226497	
chr4	237261	240210	237402	239817	+	Cre04.g217450.t1.1	Cre04.g217450.t1.1		237261,237787,238166,239120,239580	237507,237846,238711,239176,240210	
chr4	240271	244422	240309	244116	+	URN3	Cre04.g217500.t1.2		240271,240865,241549,242004,242410,243133,243817	240486,241196,241808,242194,242812,243624,244422	
chr4	245151	257595	245347	256996	+	EIF3C	Cre04.g217550.t1.1		245151,245417,245684,245962,246391,246671,248113,248485,248860,249448,249958,250917,251237,251581,251941,252256,252750,253277,253786,254268,255371,255880,256362	245350,245601,245792,246234,246492,246774,248200,248604,248937,249516,250052,251006,251357,251718,251997,252414,252887,253432,253994,254571,255526,256088,257595	putative Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c)
chr4	260865	262720	261796	262543	-	Cre04.g217650.t1.2	Cre04.g217650.t1.2		262402,262150,260865	262720,262221,261952	
chr4	265181	268732	265252	268485	+	Cre04.g217700.t1.1	Cre04.g217700.t1.1		265181,265536,265765,266107,266593,266941,267531,268086	265421,265556,265785,266440,266802,267201,267819,268732	
chr4	265211	268732	265934	268485	+	Cre04.g217700.t2.1	Cre04.g217700.t2.1		265211,265536,265765,265904,266107,266593,266941,267531,268086	265421,265556,265785,265941,266440,266802,267201,267819,268732	
chr4	271571	282642	271681	282101	+	Cre04.g217750.t1.1	Cre04.g217750.t1.1		271571,271905,272273,272948,273770,274025,274454,274772,275439,275958,276269,276645,276902,277394,277955,278378,278969,279540,279918,280971,281529,281999	271759,271975,272580,273292,273885,274078,274527,274862,275544,276016,276334,276741,276954,277462,278049,278472,279063,279609,280074,281118,281597,282642	
chr4	282691	287843	282792	287765	+	Cre04.g217800.t1.1	Cre04.g217800.t1.1		282691,282978,283490,283853,284328,284736,285063,285477,285887,286188,286448,287128,287615	282798,283127,283660,283887,284487,284780,285140,285551,285988,286247,286687,287196,287843	
chr4	1865360	1878750	1865418	1877672	+	Cre04.g217850.t1.1	Cre04.g217850.t1.1		1865360,1865816,1866751,1867380,1867732,1868593,1870575,1871089,1871813,1872254,1872764,1873098,1873672,1875490,1875836,1876372,1876738,1877357	1865453,1865912,1867053,1867426,1868249,1869879,1870656,1871194,1871908,1872530,1872891,1873410,1875282,1875629,1876019,1876474,1876813,1878750	
chr4	1882903	1884701	1883238	1883992	+	Cre04.g217900.t1.2	Cre04.g217900.t1.2		1882903	1884701	
chr4	297941	303134	298021	301979	+	Cre04.g217903.t1.1	Cre04.g217903.t1.1		297941,298111,298623,299231,299436,299887,300330,301156,301505,301909	298038,298336,298732,299273,299543,299951,300411,301239,301602,303134	
chr4	304665	309350	305036	309119	-	Cre04.g217904.t1.1	Cre04.g217904.t1.1		309093,308406,307984,307445,306843,306412,305642,304665	309350,308933,308223,307546,307091,306533,305934,305438	
chr4	309415	312330	309597	312242	-	Cre04.g217905.t1.1	Cre04.g217905.t1.1		312166,311791,311360,310617,309415	312330,311968,311418,311033,310316	
chr4	312460	315572	312784	314536	+	Cre04.g217906.t1.1	Cre04.g217906.t1.1		312460,313031,313506,313839,314121,314524	312871,313142,313560,313915,314242,315572	
chr4	315621	323342	315897	322730	+	FAP79	Cre04.g217907.t1.1		315621,316216,316444,316897,318863,319471,321268,321852	316004,316225,316536,317002,319113,319639,321591,323342	Was initially identified as part of Flagellar Associated Protein FAP79 [PMID: 15998802], but gene model was later split
chr4	323411	341022	323749	340120	+	FAP79	Cre04.g217908.t1.1		323411,323728,324123,324409,324846,325366,326001,327160,327458,327901,329358,329624,329975,330336,330706,331230,331618,332091,332391,332635,333238,333705,334447,334789,335119,335518,335739,336012,336325,336509,336794,337052,337370,337800,338177,338491,338823,339201,339582,339964	323614,323924,324245,324660,325147,325720,326980,327289,327724,329109,329509,329759,330161,330544,330990,331426,331843,332256,332503,332883,333490,334134,334581,334924,335216,335632,335876,336072,336433,336547,336870,337178,337534,337877,338275,338551,338911,339372,339679,341022	Flagellar Associated Protein with ankyrin repeats. Found in the flagellar proteome [PMID: 15998802].  Possible phospholipase A2 or serine endopeptidase activity; null-allele passenger mutation was isolated (PMID 29743196)
chr4	341025	347320	341248	347068	-	Cre04.g217909.t1.1	Cre04.g217909.t1.1		346771,345869,343307,342632,341025	347320,346513,345637,343078,342439	
chr4	347471	352652	347607	352049	+	Cre04.g217910.t1.1	Cre04.g217910.t1.1		347471,348120,348745,349076,349581,350129,350697,351152,351456,351956	347775,348166,348820,349138,349661,350231,350794,351219,351486,352652	
chr4	352680	359310	353282	358952	-	Cre04.g217911.t1.1	Cre04.g217911.t1.1		358777,358611,357694,356960,356635,356343,355766,354437,354119,353912,353687,352680	359310,358652,357735,357154,356756,356510,355839,354602,354280,353995,353800,353540	
chr4	362435	365486	362825	365433	-	Cre04.g217912.t1.1	Cre04.g217912.t1.1		365409,365279,364570,364206,363810,363451,362435	365486,365362,365108,364268,363878,363568,363044	
chr4	365542	370386	366246	369864	-	MCP19	Cre04.g217913.t1.1		369762,369376,368221,367424,366909,365542	370386,369438,369081,367738,367031,366324	
chr4	370547	382328	370846	381479	+	FAP57	Cre04.g217914.t1.1		370547,371152,371568,371967,372433,372875,373272,373759,374068,374335,374535,374923,375383,375738,376470,376913,377515,377823,378162,378548,379135,379938,380464,381044	370872,371440,371720,372107,372519,373059,373389,373850,374167,374394,374684,375135,375521,375930,376578,377065,377718,377852,378265,378806,379452,380117,380676,382328	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr4	370547	382328	370846	381479	+	FAP57	Cre04.g217914.t2.1		370547,371152,371568,371967,372433,372875,373272,373759,374068,374335,374535,374923,375383,375738,376470,376913,377515,378162,378548,379135,379938,380464,381044	370872,371440,371720,372107,372519,373059,373389,373850,374167,374394,374684,375135,375521,375930,376578,377065,377718,378265,378806,379452,380117,380676,382328	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr4	382467	390723	382609	388582	+	NAR1.3	Cre04.g217915.t1.1		382467,383150,383808,384136,384567,385023,385358,385630,385894,386347,386806,387404,387697,387986,388379	383017,383207,383842,384207,384653,385112,385439,385700,385960,386420,386935,387450,387767,388149,390723	Formate nitrite transporter, NCBI Accession number AY612643
chr4	390800	396976	391163	396618	-	Cre04.g217916.t1.1	Cre04.g217916.t1.1		396582,396019,395264,394843,394430,393878,393549,393080,392605,392057,391684,391463,390800	396976,396078,395307,394906,394540,393955,393601,393116,392685,392215,391822,391482,391277	null-allele passenger mutation was isolated (PMID 29743196)
chr4	390800	396976	391163	396618	-	Cre04.g217916.t2.1	Cre04.g217916.t2.1		396766,396582,396019,395264,394843,394430,393878,393549,393080,392605,392057,391684,391463,390800	396976,396634,396078,395307,394906,394540,393955,393601,393116,392685,392215,391822,391482,391277	null-allele passenger mutation was isolated (PMID 29743196)
chr4	397107	401278	397300	401125	+	Cre04.g217917.t1.1	Cre04.g217917.t1.1		397107,398076	397398,401278	
chr4	402957	404482	402991	403283	+	Cre04.g217918.t2.1	Cre04.g217918.t2.1		402957	404482	
chr4	402687	404483	403078	403283	+	Cre04.g217918.t1.1	Cre04.g217918.t1.1		402687	404483	
chr4	404761	421746	405085	421280	-	Cre04.g217919.t1.1	Cre04.g217919.t1.1		421582,420521,420129,419628,418792,418163,417681,416567,416033,415427,414832,414209,413875,413350,412550,411913,410494,409900,409297,409030,408660,408449,407573,407089,406631,404761	421746,421344,420259,419747,419146,418600,417759,417344,416139,415657,414950,414343,413926,413509,412716,412037,411620,410016,409446,409093,408731,408529,408148,407180,406702,406256	
chr4	421801	427056	422901	426711	-	Cre04.g217920.t1.1	Cre04.g217920.t1.1		424458,421801	427056,424062	
chr4	429415	439636	430214	439410	-	COPB1	Cre04.g217921.t1.1		439170,438786,438443,438083,437757,437379,436787,436556,436131,435793,435413,435100,434454,434088,433727,433347,432928,432378,432077,431516,431118,430755,429415	439636,438833,438513,438218,437816,437522,436959,436625,436247,435890,435489,435200,434589,434200,433895,433513,433056,432506,432165,431698,431205,430893,430438	Expressed Protein. Beta-COP. Subunit of COP-I complex involved in vesicle coat formation.
chr4	439737	445738	439845	445111	+	Cre04.g217922.t1.1	Cre04.g217922.t1.1		439737,440054,440565,440909,441555,442023,442512,442856,443788	439931,440159,440717,441013,441653,442097,442694,443584,445738	
chr4	447002	453213	448111	452278	+	Cre04.g217923.t1.1	Cre04.g217923.t1.1		447002,448070,448317,448851,449264,450925,451642	447767,448114,448412,449066,450607,451371,453213	
chr4	453249	455631	453514	455560	-	Cre04.g217924.t1.1	Cre04.g217924.t1.1		455542,455337,454870,454585,454157,453249	455631,455459,455031,454682,454298,453946	
chr4	455732	460990	456482	460945	+	Cre04.g217925.t1.1	Cre04.g217925.t1.1		455732,456718,456949,457499,457960,458610,458971,459243,459835,460128,460466,460750	456518,456756,457212,457549,458304,458738,459097,459472,459963,460175,460537,460990	
chr4	462402	464258	462671	463620	+	Cre04.g217926.t1.1	Cre04.g217926.t1.1		462402,463011	462773,464258	
chr4	464662	469975	464914	469284	+	Cre04.g217927.t1.1	Cre04.g217927.t1.1		464662,465236,465903,469284	464944,465706,467776,469975	
chr4	470102	475373	470653	474288	+	Cre04.g217928.t1.1	Cre04.g217928.t1.1		470102,470612,470857,471180,471637,472934,473652	470317,470656,470952,471518,472620,473380,475373	
chr4	475911	483801	476360	483760	-	Cre04.g217929.t1.1	Cre04.g217929.t1.1		483283,482944,482486,481888,481395,480940,480552,479969,479439,478866,478285,477826,477402,476849,475911	483801,482965,482559,481936,481502,481052,480648,480037,479482,478946,478444,477944,477470,477016,476528	
chr4	489536	496081	491076	496054	-	Cre04.g217930.t1.1	Cre04.g217930.t1.1		496000,495644,495294,494857,494632,494208,493850,493310,492905,492373,489536	496081,495751,495377,494971,494699,494339,494074,493365,493025,492519,492015	
chr4	489536	496081	491076	496054	-	Cre04.g217930.t2.1	Cre04.g217930.t2.1		496000,495644,495294,494894,494208,493850,493310,492905,492373,489536	496081,495751,495377,494971,494339,494074,493365,493025,492519,492015	
chr4	496129	501081	496829	500878	-	PFH14	Cre04.g217931.t1.1		500805,500620,500433,499756,499369,499065,498744,498313,497998,497584,497275,496129	501081,500690,500461,499852,499448,499152,498821,498446,498074,497666,497364,496982	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate; contains C-terminal ShK domain
chr4	501322	503547	502322	503502	-	PRPL35	Cre04.g217932.t1.1		503472,503185,502935,502626,501322	503547,503253,502991,502726,502410	imported to chloroplast
chr4	503732	508493	503854	507408	+	Cre04.g217933.t1.1	Cre04.g217933.t1.1		503732,504459,504824,505023,505282,506058,506472,506930,507327	504169,504573,504885,505104,505499,506135,506509,507014,508493	
chr4	508584	512351	509098	512205	-	Cre04.g217934.t1.1	Cre04.g217934.t1.1		512099,511827,511566,511371,511159,510623,510209,509957,509789,509296,508584	512351,511877,511614,511416,511203,510700,510283,510036,509812,509363,509142	
chr4	512452	532903	513399	532718	+	Cre04.g217935.t1.1	Cre04.g217935.t1.1		512452,513311,513862,514173,514517,514948,515199,515677,516092,516659,517518,518101,518602,519108,519716,520087,521076,521493,522112,522915,523268,523504,523864,524839,525291,525795,526191,526800,527265,527643,528124,528579,528982,529397,529863,530172,530460,531027,531515,532081,532622	512971,513576,513969,514239,514614,514995,515452,515758,516220,516843,517748,518177,518756,519209,519791,520365,521131,521788,522556,522997,523391,523678,524486,525097,525511,525881,526283,526895,527369,527803,528303,528668,529089,529454,529965,530242,530587,531120,531622,532341,532903	
chr4	571216	574481	571450	573393	-	Cre04.g217936.t1.1	Cre04.g217936.t1.1		573711,573363,573068,571216	574481,573408,573160,572842	
chr4	577356	581071	577979	580083	-	Cre04.g217937.t1.1	Cre04.g217937.t1.1		580319,580206,579639,578614,577356	581071,580274,580146,579117,578519	
chr4	581460	593331	581819	592134	-	Cre04.g217938.t1.1	Cre04.g217938.t1.1		592541,591999,591410,590977,590618,590429,590278,589748,589544,589230,588971,586041,585516,584744,584397,584038,583849,583698,583150,582572,582200,581460	593331,592239,591847,591105,590744,590472,590351,589892,589555,589280,589099,586148,585566,584902,584525,584164,583892,583771,583294,582619,582271,581987	
chr4	593472	595946	593885	595481	+	FAD5C	Cre04.g217939.t1.1		593472,594239,594625,594976,595283	593933,594400,594722,595117,595946	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia; linked and very similar to FAD5B and FAD5D
chr4	595996	601531	596783	600461	-	Cre04.g217940.t1.1	Cre04.g217940.t1.1		600778,600431,600140,598424,597682,595996	601531,600475,600232,599977,598125,597419	
chr4	602670	609651	603188	608860	-	Cre04.g217941.t1.1	Cre04.g217941.t1.1		608743,608105,607743,607385,606714,606459,605858,604916,604525,604128,603531,602670	609651,608341,607826,607525,607124,606533,606160,605566,604698,604189,603745,603244	
chr4	609792	615733	609988	614895	+	Cre04.g217942.t1.1	Cre04.g217942.t1.1		609792,610556,611162,611468,612233,612668,613162,613521,614252,614502	610255,610737,611300,611611,612264,612836,613268,613941,614344,615733	
chr4	615738	621421	616708	620331	-	Cre04.g217943.t1.1	Cre04.g217943.t1.1		620675,620328,620045,618360,617608,615738	621421,620372,620125,619841,618051,617344	
chr4	622750	629885	623378	629087	-	Cre04.g217944.t1.1	Cre04.g217944.t1.1		628970,628351,627982,627625,626931,626675,626053,625111,624720,624320,623721,622750	629885,628590,628065,627765,627365,626749,626385,625761,624893,624381,623932,623434	
chr4	629976	635651	630675	634838	+	Cre04.g217945.t1.1	Cre04.g217945.t1.1		629976,631360,631709,632083,632566,633035,633416,633603,633831,634125,634467,634727	630939,631521,631806,632224,632687,633140,633468,633632,633881,634187,634527,635651	
chr4	630503	635651	630675	634838	+	Cre04.g217945.t2.1	Cre04.g217945.t2.1		630503,631360,631709,632083,632566,633035,633416,633603,633831,634125,634467,634727	630939,631521,631806,632224,632687,633140,633468,633632,633881,634187,634527,635651	
chr4	630503	636007	630675	635776	+	Cre04.g217945.t3.1	Cre04.g217945.t3.1		630503,631360,631709,632083,632566,633035,633416,633603,633831,634125,634467,634727,635776	630939,631521,631806,632224,632687,633140,633468,633632,633881,634187,634527,634846,636007	
chr4	636032	639705	636964	639557	-	Cre04.g217946.t1.1	Cre04.g217946.t1.1		639543,638767,638434,637955,637396,636032	639705,639347,638517,638073,637516,637119	
chr4	642586	648856	643352	647255	+	Cre04.g217947.t1.1	Cre04.g217947.t1.1		642586,646142	645812,648856	
chr4	649756	654182	650012	653267	+	Cre04.g217948.t1.1	Cre04.g217948.t1.1		649756,650479,651749	650080,651532,654182	
chr4	649756	654182	650830	653267	+	Cre04.g217948.t2.1	Cre04.g217948.t2.1		649756,650479,651749	650312,651532,654182	
chr4	654316	673959	654740	673052	+	AXL6	Cre04.g217949.t1.1		654316,655217,656055,656730,657344,657741,658285,660869,661660,662072,662513,662942,663177,663673,664204,664807,665102,665331,665669,666038,666372,666661,666946,667271,672651,672932	654857,655299,656151,656823,657447,658053,658399,660917,661724,662133,662617,663006,663317,663743,664281,664906,665158,665366,665730,666131,666431,666729,666999,667333,672710,673959	GT77 family; May contain additional coding sequence in intronic N-island PMID: 27175017
chr4	1885567	1894942	1887632	1894258	-	Cre04.g217950.t1.2	Cre04.g217950.t1.2		1894717,1894201,1893756,1893187,1892619,1891713,1891361,1890806,1888542,1885567	1894942,1894613,1893809,1893261,1892747,1892071,1891466,1890907,1888699,1888254	
chr4	674366	677377	674606	676679	+	LCI33	Cre04.g217951.t1.1		674366,674966,675275	674728,675065,677377	Low-CO2 inducible gene (homologous to unknown protein in Trypanosoma brucei) revealed by cDNA array analyses
chr4	677446	682304	677592	681758	+	Cre04.g217952.t1.1	Cre04.g217952.t1.1		677446,677740,677933,678251,678751,679715,680053,680467,680852,681340,681622	677610,677785,678076,678541,679478,679778,680207,680562,680896,681380,682304	
chr4	677446	682304	677592	681758	+	Cre04.g217952.t2.1	Cre04.g217952.t2.1		677446,677740,677933,678251,678751,679715,680053,680467,681340,681622	677610,677785,678076,678541,679478,679778,680207,680562,681380,682304	
chr4	685929	691875	686400	691575	-	Cre04.g217953.t1.1	Cre04.g217953.t1.1		690130,688525,687292,686994,686726,685929	691875,689842,688355,687075,686800,686502	
chr4	692266	705567	692557	703805	+	Cre04.g217954.t1.1	Cre04.g217954.t1.1		692266,693681,694212,694506,694859,695062,696779,697146,697511,698399,699515,700034,700265,700979,701331,701667,701929,702155,702464,702965,703673	693442,694031,694403,694604,694893,696556,696931,697324,698268,699205,699864,700118,700743,701073,701454,701732,701995,702234,702783,703052,705567	
chr4	706573	711725	708718	711465	-	Cre04.g217955.t1.1	Cre04.g217955.t1.1		711440,711319,711191,710975,710639,710284,709905,709514,709134,706573	711725,711371,711219,711049,710757,710357,709976,709597,709225,708833	(EC 3.1.3.3); predicted mitochondrial targeting by Target-P; homology predicts plastid targeting. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145].
chr4	712505	713165	712877	713061	-	Cre04.g217956.t1.1	Cre04.g217956.t1.1		712505	713165	
chr4	718480	721455	721234	721427	-	Cre04.g217957.t1.1	Cre04.g217957.t1.1		718480	721455	
chr4	720371	723465	723237	723406	-	Cre04.g217958.t1.1	Cre04.g217958.t1.1		720371	723465	
chr4	728498	733035	730014	732660	-	Cre04.g217959.t1.1	Cre04.g217959.t1.1		732736,732615,732487,732271,731935,731580,731201,730810,730430,728498	733035,732667,732515,732345,732053,731653,731272,730893,730521,730129	
chr4	729187	733035	730014	732660	-	Cre04.g217959.t2.1	Cre04.g217959.t2.1		732736,732615,732487,732271,731935,731580,731201,730810,730430,729187	733035,732667,732515,732345,732053,731653,731272,730893,730521,730129	
chr4	733801	734455	734173	734357	-	Cre04.g217960.t1.1	Cre04.g217960.t1.1		733801	734455	
chr4	739916	741417	740227	741155	+	Cre04.g217961.t2.1	Cre04.g217961.t2.1		739916,740305,740651,741119	740239,740472,740932,741417	
chr4	739746	741417	740227	741155	+	Cre04.g217961.t1.1	Cre04.g217961.t1.1		739746,740305,740651,741119	740239,740472,740932,741417	
chr4	741576	742969	741655	742770	+	LCI12	Cre04.g217962.t1.1		741576,741744,742231	741674,741953,742969	At least five other paralogous genes are found in Chlamydomonas, but this family is not present in other organisms. N-terminal sequences are repeated; regulated by CCM1 [PMID: 15235119]
chr4	747606	753527	748063	750580	+	Cre04.g217963.t1.1	Cre04.g217963.t1.1		747606,748061,748261,748806,749410,749954,750295,750517	747756,748078,748288,748901,749488,750029,750351,753527	
chr4	756597	761885	759552	761590	-	Cre04.g217964.t1.1	Cre04.g217964.t1.1		760664,760266,756597	761885,760475,759619	
chr4	770336	775963	773325	774617	+	Cre04.g217965.t1.1	Cre04.g217965.t1.1		770336,773315,773637,773987,774332,774554	770405,773512,773889,774065,774388,775963	
chr4	784796	786322	784822	786156	+	Cre04.g217966.t1.1	Cre04.g217966.t1.1		784796,785114,785382,786091	784988,785253,785643,786322	
chr4	786436	787747	786511	787067	+	Cre04.g217967.t1.1	Cre04.g217967.t1.1		786436	787747	
chr4	789987	792752	791605	792197	-	Cre04.g217968.t1.1	Cre04.g217968.t1.1		792313,789987	792752,792205	
chr4	797327	800212	797831	800000	-	Cre04.g217969.t1.1	Cre04.g217969.t1.1		799392,799132,798753,798437,798185,797327	800212,799205,798991,798619,798256,797987	
chr4	800373	804954	800483	803489	+	Cre04.g217970.t1.1	Cre04.g217970.t1.1		800373,800681,801151,801497,801859,802519,803006	800611,800881,801361,801715,802358,802789,804954	probably from a transposable element
chr4	800373	804044	800483	803489	+	Cre04.g217970.t2.1	Cre04.g217970.t2.1		800373,800681,801151,801497,801859,802519,803006	800611,800881,801361,801715,802358,802789,804044	probably from a transposable element
chr4	804986	810302	806598	809695	-	Cre04.g217971.t1.1	Cre04.g217971.t1.1		809655,809072,808590,807978,807577,807186,806690,804986	810302,809587,808883,808312,807824,807406,806863,806612	
chr4	804986	810302	806598	809325	-	Cre04.g217971.t2.1	Cre04.g217971.t2.1		809655,809072,808590,807978,807577,807186,806690,804986	810302,809587,808883,808312,807824,807406,806863,806612	
chr4	810694	812762	812337	812635	-	Cre04.g217972.t1.1	Cre04.g217972.t1.1		810694	812762	
chr4	813064	814172	813308	813786	-	Cre04.g217973.t1.1	Cre04.g217973.t1.1		813918,813423,813064	814172,813803,813308	
chr4	814293	815284	814908	815230	+	Cre04.g217974.t1.1	Cre04.g217974.t1.1		814293	815284	
chr4	823053	824844	823099	824424	+	Cre04.g217975.t1.1	Cre04.g217975.t1.1		823053,824419	824276,824844	
chr4	834643	837524	834718	834934	+	Cre04.g217976.t1.1	Cre04.g217976.t1.1		834643,834781	834730,837524	
chr4	855393	857284	855531	856887	+	CSU3	Cre04.g217977.t1.1		855393,855844,856208,856779	855765,856092,856690,857284	probably tranposon-derived
chr4	860603	866094	861163	865904	+	Cre04.g217978.t1.1	Cre04.g217978.t1.1		860603,864946	862803,866094	
chr4	877505	881322	878056	881224	-	Cre04.g217979.t1.1	Cre04.g217979.t1.1		879514,878630,877505	881322,879333,878056	
chr4	881435	886144	881476	883287	+	Cre04.g217980.t1.1	Cre04.g217980.t1.1		881435,881802,883085	881607,882116,886144	
chr4	886203	889552	888437	888889	-	Cre04.g217981.t1.1	Cre04.g217981.t1.1		889021,888869,886203	889552,888906,888639	
chr4	889673	891867	890012	890328	+	Cre04.g217982.t1.1	Cre04.g217982.t1.1		889673	891867	
chr4	891897	896422	894895	895644	-	Cre04.g217983.t1.1	Cre04.g217983.t1.1		895597,891897	896422,895016	
chr4	928797	930672	928951	930455	-	Cre04.g217984.t1.1	Cre04.g217984.t1.1		928797	930672	
chr4	938033	940954	938087	938397	+	Cre04.g217985.t1.1	Cre04.g217985.t1.1		938033	940954	
chr4	938033	940444	938087	938397	+	Cre04.g217985.t2.1	Cre04.g217985.t2.1		938033	940444	
chr4	951087	954262	951103	954167	-	Cre04.g217986.t1.1	Cre04.g217986.t1.1		954119,951087	954262,953791	
chr4	1023240	1024845	1023699	1024156	-	Cre04.g217987.t1.1	Cre04.g217987.t1.1		1024125,1023240	1024845,1023908	
chr4	1026616	1028267	1027394	1027762	+	Cre04.g217988.t1.1	Cre04.g217988.t1.1		1026616,1027757	1027599,1028267	
chr4	1028270	1031475	1031258	1031445	-	Cre04.g217989.t1.1	Cre04.g217989.t1.1		1028270	1031475	
chr4	1043410	1047155	1045402	1047107	-	Cre04.g217990.t1.1	Cre04.g217990.t1.1		1046119,1043410	1047155,1045887	
chr4	1062540	1070685	1063483	1070642	-	Cre04.g217991.t1.1	Cre04.g217991.t1.1		1070542,1070017,1069453,1068138,1065137,1062540	1070685,1070333,1069888,1069362,1068004,1065014	
chr4	1895517	1901082	1895979	1900919	-	Cre04.g218000.t1.1	Cre04.g218000.t1.1		1899369,1898896,1898579,1898339,1898073,1897245,1896874,1895517	1901082,1898991,1898637,1898388,1898191,1897389,1896963,1896519	
chr4	1901688	1912262	1904440	1911774	-	RWP8	Cre04.g218050.t1.1		1911984,1911342,1910596,1910124,1909743,1907572,1901688	1912262,1911864,1910727,1910168,1909850,1909413,1907401	putative RWP-RK domain transcription factor [PMID: 15785851]
chr4	1901688	1912262	1904440	1911774	-	RWP8	Cre04.g218050.t2.1		1911984,1911342,1910596,1910124,1909743,1907572,1901688	1912262,1911867,1910727,1910168,1909850,1909413,1907401	putative RWP-RK domain transcription factor [PMID: 15785851]
chr4	1912373	1915996	1912657	1915167	+	FAP25	Cre04.g218100.t1.2		1912373,1913098,1913628,1914368,1914705,1914996	1912680,1913218,1913791,1914433,1914804,1915996	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome
chr4	1916630	1924661	1916805	1922952	+	Cre04.g218150.t1.2	Cre04.g218150.t1.2		1916630,1916933,1917841,1919271,1919897,1920302,1920710,1921239,1922034,1922532,1922856	1916835,1917172,1917957,1919510,1919980,1920400,1920790,1921373,1922132,1922621,1924661	
chr4	1924697	1930342	1925624	1929570	-	Cre04.g218200.t1.1	Cre04.g218200.t1.1		1927842,1926491,1926059,1924697	1930342,1927573,1926429,1925624	
chr4	1931358	1934622	1932273	1934553	-	FAP313	Cre04.g218250.t1.2		1934550,1934429,1934263,1934095,1933928,1932957,1931358	1934622,1934473,1934358,1934180,1934030,1933004,1932426	Expressed Protein; similar to the ARL3 type of ARF-related small GTPase. This type of GTPase is found in animals but not in angiosperms. Found in the flagellar proteome [PMID: 15998802]
chr4	1934743	1943094	1934883	1942326	+	Cre04.g218300.t1.2	Cre04.g218300.t1.2		1934743,1935593,1936691,1937437,1938406,1938733,1939084,1939287,1939621,1940199,1940598,1940997,1941566,1942083	1935317,1936265,1937216,1938164,1938469,1938814,1939171,1939394,1939830,1940237,1940712,1941109,1941667,1943094	
chr4	1943461	1945104	1943611	1944222	+	Cre04.g218350.t1.2	Cre04.g218350.t1.2		1943461,1944222	1944012,1945104	
chr4	1943461	1945104	1943611	1944225	+	Cre04.g218350.t2.1	Cre04.g218350.t2.1		1943461,1944225	1944012,1945104	
chr4	1945303	1949014	1945890	1947452	+	Cre04.g218400.t1.1	Cre04.g218400.t1.1		1945303,1946179	1946000,1949014	
chr4	1949143	1959975	1949377	1959253	+	Cre04.g218450.t1.2	Cre04.g218450.t1.2		1949143,1949721,1950392,1950885,1951621,1951987,1952647,1953371,1953798,1954249,1954779,1955273,1956207,1956976,1957267,1958182,1958857	1949398,1949762,1950493,1950938,1951662,1952094,1952757,1953442,1953888,1954375,1954860,1955364,1956303,1957044,1957398,1958283,1959975	
chr4	1960407	1971192	1961360	1971076	-	Cre04.g218500.t1.2	Cre04.g218500.t1.2		1970830,1970492,1969950,1969262,1968720,1967979,1967111,1966282,1965913,1965530,1964532,1964063,1962532,1962032,1960407	1971192,1970621,1970078,1969353,1968815,1968083,1967194,1966395,1965978,1965604,1964582,1964149,1962573,1962097,1961477	
chr4	1972103	1977724	1975278	1977168	+	Cre04.g218526.t1.1	Cre04.g218526.t1.1		1972103,1975270,1975826,1976558,1977063	1972443,1975362,1976320,1976629,1977724	
chr4	1978193	1981424	1978578	1981408	+	Cre04.g218550.t1.2	Cre04.g218550.t1.2		1978193	1981424	
chr4	1982074	1988322	1982412	1988175	-	Cre04.g218600.t1.2	Cre04.g218600.t1.2		1987977,1987661,1987176,1986677,1986038,1985343,1982074	1988322,1987821,1987354,1986807,1986214,1985450,1984848	
chr4	1988412	1992562	1989639	1992491	-	UCP3	Cre04.g218650.t1.1		1992431,1992048,1991846,1991562,1991264,1990637,1990392,1990051,1988412	1992562,1992201,1991914,1991734,1991326,1990765,1990471,1990114,1989822	Belong to mitochondrial substrate carrier family
chr4	1992611	1994062	1993311	1993962	-	INFA	Cre04.g218700.t1.2		1993920,1993747,1992611	1994062,1993833,1993668	Putative bacterial/organellar initiation factor 1 (IF-1)
chr4	1994179	1998272	1995650	1998019	-	THB4	Cre04.g218750.t1.2		1997935,1997111,1996732,1996383,1996027,1994179	1998272,1997245,1996873,1996454,1996137,1995751	Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryotes (Paramecium, Tetrahymena); the C. eugametos orthologue has been localized to the plastid, particularly in the pyrenoid and the thylakoid region; there are two pairs of related and linked genes in this family, this one belongs to the pair on Chr_4
chr4	1994179	1998232	1995650	1998019	-	THB4	Cre04.g218750.t2.1		1997935,1997111,1996732,1996383,1996027,1994179	1998232,1997233,1996873,1996454,1996137,1995751	Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryotes (Paramecium, Tetrahymena); the C. eugametos orthologue has been localized to the plastid, particularly in the pyrenoid and the thylakoid region; there are two pairs of related and linked genes in this family, this one belongs to the pair on Chr_4
chr4	1999171	2003922	2000758	2003745	-	THB3	Cre04.g218800.t1.1		2003634,2003397,2003095,2002721,2002193,2001490,2001142,1999171	2003922,2003501,2003197,2002847,2002322,2001624,2001212,2000870	Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryotes (Paramecium, Tetrahymena); the C. eugametos orthologue has been localized to the plastid, particularly in the pyrenoid and the thylakoid region; this C. reinhardtii protein has been identified in a thylakoid enriched fraction [PMID: 17078018]; there are two pairs of related and linked genes in this family, this one belongs to the pair on Chr_4
chr4	2004036	2010487	2004191	2009511	+	Cre04.g218850.t1.2	Cre04.g218850.t1.2		2004036,2004618,2005409,2006053,2006500,2006937,2007383,2007770,2008599,2009237,2009449	2004413,2004710,2005499,2006144,2006619,2007023,2007487,2007834,2008692,2009303,2010487	
chr4	2011376	2026627	2012395	2025838	+	Cre04.g218900.t1.1	Cre04.g218900.t1.1		2011376,2012295,2012575,2012832,2013044,2013464,2013600,2014878,2015111,2015551,2015865,2016619,2016928,2017172,2017644,2017966,2018317,2018949,2019199,2019500,2019722,2020026,2020392,2021182,2021452,2021703,2021961,2022487,2022736,2023080,2023433,2023819,2024043,2024394,2024542,2024753,2025070	2012167,2012431,2012699,2012967,2013273,2013494,2014610,2015015,2015392,2015673,2016394,2016763,2017044,2017543,2017787,2018121,2018774,2019039,2019375,2019622,2019928,2020211,2021066,2021328,2021595,2021831,2022341,2022595,2022956,2023294,2023684,2023931,2024235,2024430,2024625,2024929,2026627	
chr4	2026766	2031577	2026885	2031560	+	Cre04.g218950.t1.1	Cre04.g218950.t1.1		2026766,2028382,2029116,2029439,2029930,2030595,2031209	2028133,2028753,2029216,2029510,2030412,2030928,2031577	
chr4	2031580	2047515	2033086	2046841	-	Cre04.g219000.t1.2	Cre04.g219000.t1.2		2046825,2046603,2046330,2046015,2045637,2045418,2044574,2044172,2043780,2043497,2042723,2042361,2042080,2041577,2041242,2040824,2040170,2039959,2039665,2039404,2039070,2038787,2037935,2037674,2037420,2037184,2036682,2036441,2036066,2035718,2035330,2035085,2034803,2034556,2034348,2034043,2031580	2047515,2046733,2046451,2046150,2045875,2045448,2045296,2044309,2044058,2043616,2043309,2042505,2042196,2041945,2041385,2041057,2040627,2040049,2039841,2039526,2039276,2038972,2038606,2037820,2037563,2037312,2037062,2036549,2036286,2035932,2035581,2035197,2034995,2034592,2034431,2034219,2033902	
chr4	2047750	2062645	2048768	2062405	-	SRR10	Cre04.g219050.t1.1		2062308,2062132,2061147,2060906,2060533,2059933,2059667,2059292,2058906,2058565,2058261,2057453,2056846,2055756,2055333,2054802,2054264,2053904,2053542,2052922,2052731,2052550,2052295,2051991,2051450,2049441,2047750	2062645,2062170,2061815,2060983,2060708,2060212,2059762,2059456,2059052,2058706,2058397,2058058,2057268,2056556,2055524,2054960,2054548,2054061,2053659,2053320,2052793,2052586,2052427,2052123,2051742,2051192,2049167	Scavenger receptor cysteine-rich (SCRC) protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr4	2062956	2066533	2063065	2065414	+	Cre04.g219100.t1.1	Cre04.g219100.t1.1		2062956,2063277,2063467,2063846,2064203	2063166,2063380,2063625,2063908,2066533	
chr4	2066606	2086227	2067001	2085429	+	Cre04.g219150.t1.1	Cre04.g219150.t1.1		2066606,2067190,2069159,2070342,2071373,2072134,2072609,2072973,2074199,2075469,2076643,2077363,2078285,2078899,2079265,2080256,2082005,2082513,2082738,2083169,2083792,2084342,2084695,2085048	2067089,2068775,2070032,2071046,2071935,2072407,2072749,2074055,2075205,2076345,2077072,2078014,2078437,2078979,2079428,2081645,2082151,2082581,2082790,2083330,2083922,2084438,2084740,2086227	null-allele mutant was isolated (PMID 29743196)
chr4	2086270	2092995	2086584	2092932	-	CPL19	Cre04.g219200.t1.2		2092868,2091563,2091046,2090542,2090123,2089472,2088987,2088574,2088171,2087510,2086270	2092995,2092728,2091171,2090679,2090173,2089814,2089090,2088627,2088446,2087569,2087046	Conserved in the Plant Lineage
chr4	2093096	2096928	2093419	2096065	+	IFT52	Cre04.g219250.t1.2		2093096,2093353,2094491,2094942,2095539,2095933	2093270,2094169,2094601,2095199,2095652,2096928	Component of core of IFT-B particle; contains ABC-type uncharacterized transport domain; mutated in bld1 mutant; the C. elegans homologue of IFT52/BLD1 is osm-6. [PMID: 11676918, PMID: 11676919, Genbank entry AF397450].
chr4	2096976	2100565	2097316	2099926	+	Cre04.g219300.t1.2	Cre04.g219300.t1.2		2096976,2097646,2098011,2098255,2098660,2099423,2099766	2097358,2097740,2098086,2098309,2098777,2099542,2100565	similar to ZnF_C4 abd HLH domain containing kinases (subfamily of choline kinases) smart00587
chr4	2100666	2106195	2101039	2105821	+	Cre04.g219350.t1.1	Cre04.g219350.t1.1		2100666,2102586,2102992,2103255,2103485,2104469,2105148	2101507,2102727,2103071,2103332,2104207,2104536,2106195	
chr4	2106306	2110517	2106430	2109704	+	Cre04.g219400.t1.2	Cre04.g219400.t1.2		2106306,2106925,2107208,2107708	2106604,2107007,2107363,2110517	
chr4	2110596	2113807	2110674	2113133	+	Cre04.g219450.t1.2	Cre04.g219450.t1.2		2110596,2111019,2111253,2111772,2112089,2112318,2112806,2113101	2110914,2111099,2111318,2111851,2112139,2112410,2112882,2113807	null-allele mutant was isolated (PMID 29743196)
chr4	2113876	2121987	2114319	2121504	+	DNJ30	Cre04.g219500.t1.1		2113876,2116302,2117014,2117252,2117724,2118567,2119912,2120479,2121003	2115980,2116839,2117057,2117468,2118289,2119725,2120229,2120700,2121987	DnaJ-like protein; contains TPR repeat and J-domain (pfam226) at the C-terminus.
chr4	2124876	2127180	2125005	2126290	+	Cre04.g219550.t1.2	Cre04.g219550.t1.2		2124876	2127180	
chr4	2127240	2128135	2127510	2127972	-	Cre04.g219576.t1.1	Cre04.g219576.t1.1		2127761,2127240	2128135,2127617	
chr4	2128222	2132405	2129533	2132336	-	Cre04.g219600.t1.2	Cre04.g219600.t1.2		2131978,2131632,2128222	2132405,2131700,2131398	
chr4	2132530	2135337	2133088	2135079	-	Cre04.g219650.t1.2	Cre04.g219650.t1.2		2135043,2134580,2134141,2133629,2132530	2135337,2134660,2134218,2133728,2133417	
chr4	2135390	2152805	2136103	2152437	-	BBS9	Cre04.g219700.t1.1		2152325,2151805,2151180,2150610,2150421,2149891,2149348,2148756,2148227,2147785,2147261,2146522,2145986,2145459,2144458,2143844,2143244,2142460,2142085,2141668,2141060,2138749,2138241,2137834,2137366,2136962,2135390	2152805,2151946,2151343,2150693,2150496,2150030,2149433,2148828,2148287,2147876,2147334,2146662,2146039,2145536,2144586,2143909,2143373,2142543,2142179,2141791,2141145,2138868,2138354,2137929,2137491,2137066,2136754	Flagellar protein, component of the core BBSome complex that targets membrane proteins to cilia
chr4	2135390	2152805	2136103	2152437	-	BBS9	Cre04.g219700.t2.1		2152325,2151805,2151180,2150421,2149891,2149348,2148756,2148227,2147785,2147261,2146522,2145986,2145459,2144458,2143844,2143244,2142460,2142085,2141668,2141060,2138749,2138628,2138241,2137834,2137366,2136962,2135390	2152805,2151946,2151343,2150496,2150030,2149433,2148828,2148287,2147876,2147334,2146662,2146039,2145536,2144586,2143909,2143373,2142543,2142179,2141791,2141145,2138868,2138657,2138354,2137929,2137491,2137066,2136754	Flagellar protein, component of the core BBSome complex that targets membrane proteins to cilia
chr4	2135390	2152805	2136103	2152437	-	BBS9	Cre04.g219700.t3.1		2152325,2151805,2151180,2150421,2149891,2149348,2148756,2148227,2147785,2147261,2146522,2145986,2145459,2144458,2143844,2143244,2142460,2142085,2141668,2141060,2138749,2138241,2137834,2137366,2136962,2135390	2152805,2151946,2151343,2150496,2150030,2149433,2148828,2148287,2147876,2147334,2146662,2146039,2145536,2144586,2143909,2143373,2142543,2142179,2141791,2141145,2138868,2138354,2137929,2137491,2137066,2136754	Flagellar protein, component of the core BBSome complex that targets membrane proteins to cilia
chr4	2152920	2156565	2154428	2156385	-	Cre04.g219725.t1.1	Cre04.g219725.t1.1		2155002,2154690,2152920	2156565,2154803,2154467	
chr4	2156706	2171236	2156905	2171083	+	HEL22	Cre04.g219750.t1.1		2156706,2157098,2157320,2157673,2159169,2159506,2159917,2160172,2160727,2161124,2161472,2161830,2162280,2162612,2162994,2163343,2163970,2164303,2164667,2164992,2165802,2166270,2166760,2167390,2168175,2168555,2169002,2169287,2169594,2170283	2157024,2157146,2157435,2158806,2159262,2159571,2160008,2160304,2160774,2161201,2161545,2161946,2162354,2162684,2163095,2163447,2164026,2164419,2164749,2165043,2165861,2166374,2167200,2167707,2168263,2168660,2169070,2169362,2170055,2171236	
chr4	2171286	2174421	2171541	2174022	+	Cre04.g219787.t1.2	Cre04.g219787.t1.2		2171286,2172195,2173130	2171883,2172298,2174421	
chr4	2174566	2175657	2174680	2175542	+	Cre04.g219796.t1.2	Cre04.g219796.t1.2		2174566	2175657	
chr4	2175706	2178484	2175796	2177390	+	Cre04.g219800.t1.1	Cre04.g219800.t1.1		2175706,2176710,2177000	2176228,2176811,2178484	
chr4	2182234	2188037	2184461	2187793	-	Cre04.g219851.t1.1	Cre04.g219851.t1.1		2187720,2187595,2187313,2186507,2186006,2185362,2182234	2188037,2187636,2187410,2187094,2186136,2185452,2184866	
chr4	2188148	2193214	2188323	2192372	+	Cre04.g219900.t1.1	Cre04.g219900.t1.1		2188148,2188742,2189182,2189821,2190512,2191525,2192249	2188458,2188813,2189286,2189959,2190650,2191621,2193214	
chr4	2194251	2197677	2196935	2197119	-	Cre04.g219925.t1.1	Cre04.g219925.t1.1		2194251	2197677	
chr4	2197732	2200717	2197982	2200027	-	Cre04.g219950.t1.2	Cre04.g219950.t1.2		2199899,2199702,2199467,2199048,2197732	2200717,2199810,2199505,2199355,2198715	null-allele mutant was isolated (PMID 29743196)
chr4	2201172	2221637	2202765	2221395	-	Cre04.g220000.t1.1	Cre04.g220000.t1.1		2221293,2221179,2220851,2220672,2220135,2219163,2218373,2216427,2215984,2214661,2213968,2213577,2212726,2210503,2208434,2208103,2207507,2206996,2206208,2205613,2205331,2204077,2203493,2201172	2221637,2221214,2220973,2220715,2220234,2219743,2218787,2216795,2216037,2215719,2214378,2213635,2213059,2211923,2210286,2208204,2207697,2207073,2206427,2205752,2205402,2204206,2203697,2203090	
chr4	2201172	2221637	2202765	2221395	-	Cre04.g220000.t2.1	Cre04.g220000.t2.1		2221293,2221179,2220851,2220672,2220135,2219163,2218373,2216427,2215984,2214661,2213968,2213577,2212726,2210503,2208434,2208103,2207519,2206996,2206208,2205613,2205331,2204077,2203493,2201172	2221637,2221214,2220973,2220715,2220234,2219743,2218787,2216795,2216037,2215719,2214378,2213635,2213059,2211923,2210286,2208204,2207697,2207073,2206427,2205752,2205402,2204206,2203697,2203090	
chr4	2224668	2235469	2225380	2235336	+	Cre04.g220050.t1.2	Cre04.g220050.t1.2		2224668,2226181,2226790,2227333,2227802,2228089,2228373,2229675,2231535,2231714,2232053	2225686,2226266,2226880,2227425,2227856,2228216,2229425,2231307,2231562,2231848,2235469	
chr4	2235518	2238749	2235580	2235899	+	Cre04.g220076.t1.1	Cre04.g220076.t1.1		2235518	2238749	
chr4	2239138	2246429	2239168	2245512	+	Cre04.g220100.t1.1	Cre04.g220100.t1.1		2239138,2240053,2241487,2241950,2242634,2243395	2239741,2241282,2241675,2242133,2243032,2246429	
chr4	2247468	2254055	2247582	2253529	+	Cre04.g220150.t1.2	Cre04.g220150.t1.2		2247468,2248685,2249098,2250566,2251323,2252573,2253287	2248497,2248858,2250162,2250959,2251673,2252731,2254055	
chr4	2254260	2269067	2255242	2268154	-	Cre04.g220200.t1.2	Cre04.g220200.t1.2		2268445,2267830,2267308,2266711,2266442,2265995,2265502,2265060,2264446,2263855,2263386,2262899,2262348,2261764,2261297,2260876,2260349,2259884,2259454,2258768,2258530,2258070,2257745,2257384,2257012,2256512,2256107,2255995,2255747,2254260	2269067,2268184,2267391,2266755,2266489,2266078,2265627,2265152,2264766,2263995,2263497,2263030,2262415,2261883,2261365,2260965,2260403,2259996,2259528,2258908,2258588,2258175,2257846,2257458,2257114,2256670,2256213,2256015,2255797,2255428	
chr4	2254260	2269067	2255242	2268154	-	Cre04.g220200.t2.1	Cre04.g220200.t2.1		2268445,2267830,2267308,2266711,2266442,2265995,2265502,2265060,2264446,2263855,2263386,2262899,2262348,2261764,2261297,2260876,2260349,2259884,2259454,2258768,2258530,2258070,2257745,2257384,2257012,2256512,2256107,2255747,2255640,2254260	2269067,2268184,2267391,2266755,2266489,2266078,2265627,2265152,2264766,2263995,2263497,2263030,2262415,2261883,2261365,2260965,2260403,2259996,2259528,2258908,2258588,2258175,2257846,2257458,2257114,2256670,2256213,2255797,2255645,2255428	
chr4	2254260	2269067	2255242	2268154	-	Cre04.g220200.t3.1	Cre04.g220200.t3.1		2268445,2267830,2267308,2266711,2266442,2265995,2265502,2265060,2264446,2263855,2263386,2262899,2262348,2261764,2261297,2260876,2260349,2259884,2259454,2258768,2258530,2258070,2257745,2257384,2257012,2256512,2256107,2255747,2254260	2269067,2268184,2267391,2266755,2266489,2266078,2265627,2265152,2264766,2263995,2263497,2263030,2262415,2261883,2261365,2260965,2260403,2259996,2259528,2258908,2258588,2258175,2257846,2257458,2257114,2256670,2256213,2255797,2255428	
chr4	2271171	2276087	2272310	2275746	-	Cre04.g220250.t1.1	Cre04.g220250.t1.1		2273981,2271171	2276087,2273383	
chr4	2276318	2283075	2276488	2281879	+	Cre04.g220300.t1.2	Cre04.g220300.t1.2		2276318,2277043,2277415,2277703,2278049,2278703,2279159,2279657,2280068,2280574,2281033,2281516	2276671,2277118,2277474,2277740,2278142,2278840,2279304,2279755,2280290,2280686,2281299,2283075	
chr4	2283122	2294660	2283185	2293801	+	ATPVA3	Cre04.g220350.t1.2		2283122,2283580,2284068,2284326,2284805,2285249,2285688,2286087,2286430,2286981,2287314,2287780,2288093,2288413,2288838,2289140,2289565,2290010,2290450,2290946,2291508,2292030,2292269,2293228,2293708	2283251,2283699,2284118,2284466,2284853,2285436,2285838,2286157,2286504,2287065,2287399,2287830,2288212,2288589,2288974,2289278,2289668,2290161,2290499,2291038,2291681,2292050,2292403,2293344,2294660	Putative vacuolar H+-ATPase V0 sector, subunit A; vacuolar proton translocating ATPase subunit A (ATPvA)
chr4	2283122	2294660	2283185	2293801	+	ATPVA3	Cre04.g220350.t2.1		2283122,2283580,2284068,2284326,2284805,2285249,2285688,2286087,2286430,2286981,2287314,2287780,2288093,2288413,2288838,2289140,2289565,2290010,2290450,2290946,2291508,2292269,2293228,2293708	2283251,2283699,2284118,2284466,2284853,2285436,2285838,2286157,2286504,2287065,2287399,2287830,2288212,2288589,2288974,2289278,2289668,2290161,2290499,2291038,2291681,2292403,2293344,2294660	Putative vacuolar H+-ATPase V0 sector, subunit A; vacuolar proton translocating ATPase subunit A (ATPvA)
chr4	2295108	2301362	2295752	2300200	+	CYP770A1	Cre04.g220387.t1.1		2295108,2296257,2298418,2298889	2296103,2298185,2298453,2301362	cytochrome P450, unknown function, in CYP711 clan. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan.
chr4	2301392	2304257	2302043	2304071	-	Cre04.g220424.t1.1	Cre04.g220424.t1.1		2304009,2303827,2303043,2302534,2302245,2301392	2304257,2303869,2303425,2302842,2302314,2302043	
chr4	2304312	2305217	2304457	2304761	-	Cre04.g220461.t1.1	Cre04.g220461.t1.1		2304312	2305217	
chr4	2305351	2306570	2305600	2305928	+	Cre04.g220500.t1.2	Cre04.g220500.t1.2		2305351	2306570	
chr4	2306572	2310797	2307102	2310480	-	Cre04.g220550.t1.2	Cre04.g220550.t1.2		2310454,2309235,2308716,2308542,2307557,2306572	2310797,2310085,2309183,2308605,2308324,2307102	
chr4	2311188	2312649	2311301	2311629	+	Cre04.g220576.t1.1	Cre04.g220576.t1.1		2311188	2312649	
chr4	2312652	2323677	2313424	2323303	-	Cre04.g220600.t1.1	Cre04.g220600.t1.1		2323098,2322654,2322014,2321733,2320912,2320112,2319476,2319042,2318506,2318108,2317813,2317389,2317128,2316842,2316308,2315054,2314647,2314328,2313892,2312652	2323677,2322757,2322490,2321774,2321448,2320637,2319959,2319188,2318640,2318144,2317890,2317625,2317193,2316943,2316460,2315152,2314717,2314414,2314031,2313684	null-allele passenger mutation was isolated (PMID 29743196)
chr4	2323808	2326101	2324227	2325222	+	Cre04.g220633.t1.1	Cre04.g220633.t1.1		2323808,2324216,2325033	2324041,2324659,2326101	
chr4	2323808	2326101	2324227	2325222	+	Cre04.g220633.t2.1	Cre04.g220633.t2.1		2323808,2324221,2325033	2324041,2324659,2326101	
chr4	2326476	2329907	2327000	2329504	-	ALK2	Cre04.g220700.t1.2		2329336,2329088,2328719,2328107,2327565,2327255,2326476	2329907,2329210,2328813,2328256,2327729,2327327,2327105	Possible role in mitotic regulation. Note that the ALK1 model (originally called CALK) and several other kinase models in the genome are much weaker hits to the aurora family. ts-lethal mutations block in S/M (PMID 25336509)
chr4	2329962	2334967	2331089	2334873	-	Cre04.g220750.t1.1	Cre04.g220750.t1.1		2331663,2329962	2334967,2331362	
chr4	2335042	2340777	2335371	2340654	-	Cre04.g220768.t1.1	Cre04.g220768.t1.1		2340190,2336013,2335042	2340777,2339955,2335686	
chr4	2340977	2344078	2341378	2343994	+	Cre04.g220787.t1.2	Cre04.g220787.t1.2		2340977,2342602	2342194,2344078	null-allele mutant was isolated (PMID 29743196)
chr4	2344138	2347648	2344369	2347226	+	Cre04.g220800.t1.1	Cre04.g220800.t1.1		2344138,2344466,2344871,2345247,2345865,2346455,2347012	2344384,2344599,2345012,2345634,2346091,2346558,2347648	
chr4	2347697	2349267	2347764	2349154	+	Cre04.g220825.t1.1	Cre04.g220825.t1.1		2347697,2347891,2348431,2348956	2347800,2348038,2348570,2349267	
chr4	2349627	2357985	2349939	2356895	+	Cre04.g220850.t1.2	Cre04.g220850.t1.2		2349627,2350308,2351027,2351574,2351912,2352426,2352898,2353266,2354005,2354505,2354800,2355220,2355517,2355992,2356396,2356763	2350008,2350424,2351173,2351675,2352019,2352533,2353031,2353701,2354111,2354608,2354884,2355298,2355567,2356114,2356527,2357985	
chr4	2357991	2363126	2358676	2363012	-	Cre04.g220900.t1.2	Cre04.g220900.t1.2		2362830,2362541,2362231,2361870,2361528,2361110,2360761,2360428,2360179,2360027,2359828,2359552,2359066,2357991	2363126,2362631,2362254,2361959,2361622,2361215,2360818,2360603,2360259,2360056,2359889,2359719,2359123,2358754	
chr4	2363227	2367891	2363537	2367212	+	Cre04.g220950.t1.2	Cre04.g220950.t1.2		2363227,2363702,2364040,2364447,2364840,2365466,2366167,2366470,2367080	2363587,2363792,2364106,2364631,2364977,2365561,2366250,2366544,2367891	
chr4	2367901	2373346	2368174	2372929	-	Cre04.g221000.t1.2	Cre04.g221000.t1.2		2372890,2372281,2371911,2371235,2370955,2370373,2368983,2367901	2373346,2372353,2371974,2371629,2371005,2370734,2369962,2368556	
chr4	2373467	2386177	2373724	2385202	+	Cre04.g221050.t1.2	Cre04.g221050.t1.2		2373467,2374455,2375598,2376592,2377199,2377591,2378239,2378628,2379212,2379866,2380186,2380806,2381532,2381991,2382638,2383247,2383845,2384307,2384980	2374042,2375040,2376142,2376666,2377333,2377687,2378393,2378765,2379268,2379985,2380458,2381165,2381587,2382077,2382811,2383397,2383956,2384644,2386177	
chr4	2386547	2388968	2386977	2387380	+	Cre04.g221100.t1.2	Cre04.g221100.t1.2		2386547,2386941	2386850,2388968	
chr4	2389017	2393853	2389412	2393830	+	Cre04.g221150.t1.1	Cre04.g221150.t1.1		2389017,2389715,2390021,2390365,2390673,2390912,2391437,2391773,2392157,2392676,2392899,2393221,2393471,2393755	2389600,2389805,2390050,2390454,2390767,2391017,2391494,2391948,2392237,2392705,2392960,2393388,2393528,2393853	
chr4	2394141	2405896	2396794	2405731	-	CGL109	Cre04.g221200.t1.1		2405588,2405346,2405138,2404722,2404260,2403732,2403154,2402549,2401888,2401216,2400593,2399679,2397696,2397232,2394141	2405896,2405399,2405215,2404827,2404373,2403966,2403434,2402709,2402074,2401726,2400891,2400256,2399232,2397319,2396844	null-allele mutant was isolated (PMID 29743196)
chr4	2407481	2411438	2407551	2410426	+	Cre04.g221250.t1.2	Cre04.g221250.t1.2		2407481,2407664,2407989,2408712,2408957,2409865,2410348	2407591,2407768,2408075,2408758,2409028,2409945,2411438	
chr4	2412997	2421254	2414103	2418601	+	CYCD5	Cre04.g221301.t1.1		2412997,2414081,2415197,2416325,2416779,2417379,2418181	2413757,2415002,2415935,2416396,2416856,2417990,2421254	D type cyclin. Contains LXCXE motif that binds to retinoblastoma related proteins.
chr4	2421427	2425288	2421496	2424699	+	Cre04.g221350.t1.2	Cre04.g221350.t1.2		2421427,2422399,2424381	2422090,2423157,2425288	
chr4	2426100	2428756	2427032	2428558	-	Cre04.g221400.t1.2	Cre04.g221400.t1.2		2428465,2427997,2427568,2426100	2428756,2428080,2427661,2427166	
chr4	2430687	2436859	2431103	2435793	+	PHC54	Cre04.g221450.t1.2		2430687,2431077,2431566,2432004,2432489,2432943,2433357,2433771,2434389,2434788,2435458	2430806,2431331,2431808,2432210,2432578,2433132,2433517,2434199,2434457,2435106,2436859	
chr4	2436993	2442496	2437533	2442271	-	Cre04.g221500.t1.1	Cre04.g221500.t1.1		2441951,2441251,2440465,2439955,2438843,2438350,2437880,2436993	2442496,2441690,2440550,2440024,2439567,2438433,2437966,2437656	
chr4	2442597	2451157	2442805	2449801	+	Cre04.g221550.t1.2	Cre04.g221550.t1.2		2442597,2443540,2444015,2444534,2444859,2445340,2445790,2446188,2446447,2446888,2447380,2448007,2448520,2448913,2449294	2443156,2443728,2444152,2444668,2445031,2445456,2445882,2446260,2446548,2447040,2447490,2448249,2448678,2448999,2451157	
chr4	2451191	2454566	2451679	2454503	-	Cre04.g221600.t1.2	Cre04.g221600.t1.2		2454266,2453728,2453265,2452740,2452334,2451191	2454566,2454156,2453445,2453064,2452490,2451853	
chr4	2454621	2469346	2455614	2469234	-	TOP4	Cre04.g221650.t1.1		2469207,2468409,2467844,2467552,2467069,2465318,2464824,2464411,2463863,2463501,2463037,2462543,2462259,2461890,2461156,2460767,2460354,2459794,2458756,2457990,2457564,2456961,2456274,2454621	2469346,2468888,2467911,2467588,2467200,2465388,2464908,2464476,2463943,2463552,2463332,2462788,2462297,2461981,2461532,2460815,2460484,2459931,2458955,2458420,2457696,2457254,2456525,2455890	
chr4	2469447	2473170	2469614	2472716	+	COX3	Cre04.g221700.t1.2		2469447,2469925,2470143,2470328,2470733,2471166,2471697,2472026,2472265,2472655	2469657,2470009,2470188,2470476,2470875,2471373,2471865,2472084,2472450,2473170	Cytochrome c oxidase subunit III; mitochondrial complex IV; Note: in C. reinhardtii this subunit is nuclear-encoded [PMID: 11919679]
chr4	2474147	2476238	2474553	2475674	+	Cre04.g221750.t1.1	Cre04.g221750.t1.1		2474147,2475155,2475608	2474985,2475511,2476238	
chr4	2476377	2478298	2476482	2477967	+	Cre04.g221770.t1.2	Cre04.g221770.t1.2		2476377,2477323,2477901	2476920,2477688,2478298	
chr4	2478397	2486542	2479222	2486210	+	Cre04.g221800.t1.1	Cre04.g221800.t1.1		2478397,2478972,2479220,2479772,2481809,2482526,2483288,2484080	2478876,2479106,2479516,2481526,2482294,2483113,2483809,2486542	
chr4	2486717	2489623	2486966	2487673	+	Cre04.g221850.t1.2	Cre04.g221850.t1.2		2486717,2487586	2487131,2489623	
chr4	2489802	2492866	2490470	2492833	-	Cre04.g221900.t1.1	Cre04.g221900.t1.1		2492536,2491065,2489802	2492866,2492370,2490814	
chr4	2492921	2497656	2493446	2496732	-	Cre04.g221950.t1.1	Cre04.g221950.t1.1		2497467,2496168,2492921	2497656,2496760,2495828	
chr4	2497757	2512027	2497876	2510951	+	Cre04.g222000.t1.1	Cre04.g222000.t1.1		2497757,2498418,2498836,2499326,2499845,2500413,2500815,2501294,2501864,2502411,2502811,2503293,2504342,2504739,2505344,2505987,2506604,2507238,2507632,2508564,2508782,2509765	2498171,2498554,2498994,2499423,2499919,2500593,2500916,2501561,2502149,2502555,2503041,2504084,2504441,2505115,2505502,2506277,2506732,2507388,2508332,2508615,2509460,2512027	
chr4	2512861	2522276	2513023	2522059	-	Cre04.g222050.t1.1	Cre04.g222050.t1.1		2521238,2520874,2520483,2519965,2519638,2519236,2518726,2518396,2518089,2517570,2517416,2516947,2516614,2516129,2515722,2512861	2522276,2521009,2520635,2520327,2519791,2519405,2518991,2518530,2518158,2517754,2517446,2517147,2516721,2516280,2515875,2515339	
chr4	2522399	2526079	2522656	2525414	+	Cre04.g222100.t1.2	Cre04.g222100.t1.2		2522399,2523234,2523578,2524171,2524562,2524894,2525276	2522960,2523326,2523645,2524278,2524597,2524962,2526079	
chr4	2522399	2525696	2522656	2525414	+	Cre04.g222100.t2.1	Cre04.g222100.t2.1		2522399,2523234,2523578,2524171,2524562,2524894,2525276	2522960,2523326,2523645,2524278,2524597,2524962,2525696	
chr4	2527093	2530568	2527431	2529828	+	Cre04.g222150.t1.2	Cre04.g222150.t1.2		2527093,2529192	2528889,2530568	
chr4	2530577	2532772	2530998	2532703	-	Cre04.g222200.t1.2	Cre04.g222200.t1.2		2532696,2530577	2532772,2532158	
chr4	2533367	2536592	2535188	2536509	-	Cre04.g222250.t1.2	Cre04.g222250.t1.2		2533367	2536592	
chr4	2536773	2543414	2537025	2542206	+	Cre04.g222300.t1.1	Cre04.g222300.t1.1		2536773,2538205,2538670,2539264,2539865,2540280,2540867,2541223,2541666,2542027	2537883,2538356,2538826,2539638,2540033,2540467,2540936,2541342,2541770,2543414	Contains RNA polymerase II-binding domain and Suppressor-of-White-APricot (SWAP) domain (Surp module)
chr4	2543420	2547912	2543702	2545004	-	Cre04.g222350.t1.1	Cre04.g222350.t1.1		2547707,2546918,2546508,2545707,2545440,2544924,2544591,2544265,2543420	2547912,2547616,2546838,2545737,2545495,2545016,2544678,2544336,2543996	
chr4	2550967	2559052	2551331	2558865	-	Cre04.g222402.t1.1	Cre04.g222402.t1.1		2558816,2557821,2556681,2555686,2554494,2553491,2552436,2551517,2550967	2559052,2558498,2557460,2556363,2555249,2554168,2553065,2552217,2551379	
chr4	2559193	2562197	2559312	2559529	+	Cre04.g222450.t1.1	Cre04.g222450.t1.1		2559193	2562197	
chr4	2566267	2574872	2566604	2574628	-	Cre04.g222500.t1.1	Cre04.g222500.t1.1		2574467,2574032,2573684,2573395,2573098,2572749,2572369,2572110,2571262,2570863,2570548,2569924,2569483,2569172,2568778,2568546,2568208,2567541,2566934,2566267	2574872,2574368,2573875,2573497,2573273,2572847,2572461,2572169,2571381,2570946,2570625,2570067,2569608,2569278,2568862,2568620,2568305,2567656,2567031,2566751	
chr4	2574973	2586794	2575276	2586626	+	Cre04.g222550.t1.1	Cre04.g222550.t1.1		2574973,2575614,2575879,2576704,2577132,2577497,2577908,2578829,2579465,2579785,2580397,2580825,2581280,2582085,2582528,2584535	2575396,2575672,2576328,2576887,2577188,2577648,2578588,2579180,2579570,2579904,2580510,2581043,2581439,2582272,2584215,2586794	
chr4	2586817	2590382	2587303	2590117	-	PHC46	Cre04.g222600.t1.2		2590058,2589697,2588634,2588362,2588159,2587794,2586817	2590382,2589917,2589498,2588470,2588279,2587984,2587330	
chr4	2590523	2608844	2590962	2608107	+	Cre04.g222650.t1.1	Cre04.g222650.t1.1		2590523,2590916,2592393,2593722,2595755,2599293,2600346,2600875,2601507,2601974,2602494,2603038,2603584,2603842,2604291,2606046,2606322,2606628,2607008,2607430,2607861	2590718,2592192,2593379,2595242,2599174,2600151,2600587,2601326,2601737,2602185,2602609,2603283,2603664,2604005,2605605,2606114,2606375,2606788,2607092,2607624,2608844	null-allele passenger mutation was isolated (PMID 29743196)
chr4	2608887	2615483	2610013	2615081	-	Cre04.g222700.t1.2	Cre04.g222700.t1.2		2615402,2615014,2614719,2614331,2613888,2613489,2613045,2612475,2611272,2610983,2608887	2615483,2615130,2614822,2614501,2614142,2613641,2613218,2612840,2612294,2611117,2610727	ABC transporter.  May transport sulfate/Fe3+/polyamines/heme
chr4	2617297	2620361	2618124	2619929	-	CCP2	Cre04.g222750.t1.1		2620250,2619809,2619216,2618881,2618544,2617297	2620361,2619969,2619578,2619045,2618726,2618361	related to mitochondrial substrate carrier proteins; Chen et al. 1997 [PMID: 9159951]; reproted to be localized in chloroplast . CCP2 and LCID are located in head-to-head orientation, like nearby CCP1 and LCIE; involved in acclimation to changing CO2 concentrations
chr4	2620453	2624280	2620677	2623011	+	LCID	Cre04.g222800.t1.2		2620453,2621397,2621728,2622008,2622334,2622696	2621134,2621554,2621850,2622196,2622528,2624280	Homologous to limiting-CO2 inducible proteins LCIB and LCIC [PMID: 15235119] and to LCIE [PMID 16777959, 20660228]; part of the CAH1/2 cluster of inversely repeated CO2 responsive genes; LCID and CCP2 are located in head-to-head orientation; regulated by CCM1 [PMID 16777959]
chr4	2624333	2626123	2624666	2625050	+	Cre04.g222850.t1.2	Cre04.g222850.t1.2		2624333,2624970	2624829,2626123	
chr4	2630180	2635262	2630837	2634983	-	SUR2	Cre04.g222950.t1.2		2634843,2634489,2634012,2633400,2633017,2632547,2631911,2631397,2631035,2630180	2635262,2634581,2634082,2633494,2633094,2632675,2632097,2631746,2631135,2630889	Surfeit genes are believed to play a role as housekeeping genes.  While tightly clustered in vertebrates, surfeit loci seem unlinked in invertebrates
chr4	2635373	2655963	2635605	2655657	+	HLM9	Cre04.g223000.t1.1		2635373,2636223,2636774,2637126,2637713,2638932,2639375,2639899,2640268,2640905,2646712,2647097,2647567,2647940,2648627,2649295,2649939,2650963,2651904,2652393,2652729,2653362,2654107,2654387,2654826,2655318	2635752,2636519,2636899,2637506,2638517,2639116,2639501,2639981,2640387,2646488,2646906,2647248,2647673,2648050,2648924,2649536,2650665,2651731,2652071,2652496,2653128,2653717,2654160,2654567,2655043,2655963	
chr4	2656608	2661032	2657484	2660797	-	CAH2	Cre04.g223050.t1.2		2660701,2660383,2660159,2659968,2659579,2659203,2658874,2658561,2658075,2657720,2656608	2661032,2660432,2660213,2660042,2659633,2659265,2658999,2658695,2658319,2657873,2657573	Carbonic anhydrase 2 (CA2), alpha type; periplasmic localization; high-CO2-inducible [PMID: 212472]; identical to CAH2_CHLRE, P24258 (gi:115455).  The inorganic carbon-concentrating mechanism has been reviewed by Spalding (28) [PMID: 1759798].
chr4	2662125	2666375	2662910	2666348	-	CAH1	Cre04.g223100.t1.2		2666252,2665940,2665700,2665410,2665033,2664650,2664403,2664062,2663595,2663294,2662125	2666375,2665989,2665754,2665484,2665087,2664712,2664528,2664196,2663839,2663438,2662999	Carbonate dehydratase 1 in Chlamydomonas reinhardtii, also known as CA1; gi:115447; Carbonic anhydrase 1 precursor (Carbonate dehydratase 1) (CA1); alpha type - Carbonic anhydrase 1 localized in the periplasmic space and low-CO2 inducible gene regulated b
chr4	2669273	2673984	2669562	2673181	+	NCL1	Cre04.g223150.t1.1		2669273,2670586	2670246,2673984	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr4	2678183	2684334	2678543	2683835	+	Cre04.g223200.t1.1	Cre04.g223200.t1.1		2678183,2678873,2679245,2679511,2679972	2678714,2679115,2679317,2679639,2684334	
chr4	2684383	2687318	2684410	2684609	+	Cre04.g223225.t1.1	Cre04.g223225.t1.1		2684383	2687318	
chr4	2687849	2690582	2688172	2690474	-	LCIE	Cre04.g223250.t1.1		2690138,2690024,2689690,2689382,2689050,2688708,2687849	2690582,2690078,2689847,2689504,2689238,2688902,2688502	Homologous to limiting-CO2 inducible proteins LCIC, LCIB [PMID: 15235119] and to LCID [PMID 16777959]; part of the CAH1/2 cluster of inversely repeated CO2 responsive genes; LCIE and CCP1 are located in head-to-head orientation in the cluster; regulated by CCM1 [PMID 16777959]
chr4	2690711	2693793	2691126	2693021	+	CCP1	Cre04.g223300.t1.2		2690711,2691092,2691529,2692053,2692375,2692775	2690810,2691246,2691891,2692217,2692557,2693793	low-CO2-inducible 36kDa chloroplast envelope protein (LIP36-1), CO2-responsive gene; related to mitochondrial substrate carrier proteins; CCP1 and LCIE are located in head-to-head orientation, like nearby CCP2 and LCID; regulated by CCM1 [PMID: 15235119]; involved in acclimation to changing CO2 concentrations
chr4	2694269	2701502	2694820	2700341	-	CYG62	Cre04.g223350.t1.1		2700969,2700736,2700323,2699691,2699202,2698877,2698311,2697951,2697409,2696868,2696552,2696188,2695860,2694269	2701502,2700857,2700385,2699966,2699494,2698987,2698660,2698087,2697769,2697218,2696605,2696283,2695921,2695606	
chr4	2702183	2708114	2702540	2707626	+	Cre04.g223375.t1.1	Cre04.g223375.t1.1		2702183,2704855,2705656,2706161	2704452,2705417,2705951,2708114	
chr4	2708117	2716602	2709661	2716403	-	Cre04.g223400.t1.2	Cre04.g223400.t1.2		2716373,2714173,2713652,2713252,2712978,2711337,2710832,2710456,2710009,2708117	2716602,2716095,2713805,2713424,2713046,2712812,2710939,2710568,2710258,2709757	
chr4	2717193	2723104	2717577	2722170	+	Cre04.g223450.t1.1	Cre04.g223450.t1.1		2717193,2717569,2718317,2718571,2719027,2719655,2719971,2720315,2720850,2721241,2721948	2717485,2718051,2718364,2718622,2719157,2719753,2720089,2720442,2720972,2721668,2723104	
chr4	2724566	2733467	2724875	2730976	+	Cre04.g223500.t1.1	Cre04.g223500.t1.1		2724566,2724943,2725419,2725900,2726243,2726693,2728969	2724878,2725122,2725661,2725972,2726524,2728740,2733467	
chr4	2733686	2735307	2733717	2734425	+	CSB22	Cre04.g223540.t1.2		2733686,2734103,2734329	2733984,2734213,2735307	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr4	2735400	2745905	2735531	2745574	-	Cre04.g223550.t1.1	Cre04.g223550.t1.1		2745388,2742827,2742383,2742057,2741590,2741184,2740848,2740488,2740300,2739920,2739520,2738841,2738317,2738053,2737818,2737593,2737200,2736865,2736547,2736318,2735942,2735400	2745905,2745069,2742544,2742144,2741714,2741393,2740937,2740612,2740375,2740076,2739635,2739321,2738671,2738133,2737900,2737640,2737271,2736978,2736690,2736346,2736047,2735795	
chr4	2746016	2753727	2746332	2752350	+	Cre04.g223600.t1.2	Cre04.g223600.t1.2		2746016,2748795,2749523,2749947,2750307,2750714,2751330	2748438,2749190,2749595,2750098,2750492,2751058,2753727	
chr4	2753740	2763015	2754311	2762930	-	FAP30	Cre04.g223650.t1.1		2762650,2762324,2761956,2761653,2761332,2761099,2760431,2760048,2759677,2759287,2759022,2758365,2757576,2756757,2755938,2755142,2754830,2753740	2763015,2762395,2762126,2761711,2761395,2761148,2760480,2760154,2759730,2759387,2759118,2758871,2758070,2757251,2756432,2755636,2754949,2754565	Similar to hyalin-domain proteins
chr4	2765550	2770455	2766523	2770204	-	Cre04.g223700.t1.2	Cre04.g223700.t1.2		2770194,2769787,2769313,2768497,2767975,2767571,2767045,2765550	2770455,2769965,2769426,2768565,2768019,2767643,2767120,2766662	
chr4	2770510	2776645	2771315	2776540	-	Cre04.g223750.t1.1	Cre04.g223750.t1.1		2776450,2776036,2775789,2775198,2774959,2774611,2774164,2773805,2770510	2776645,2776109,2775842,2775488,2775088,2774699,2774410,2773895,2773471	
chr4	2777271	2780408	2778111	2780200	-	Cre04.g223800.t2.1	Cre04.g223800.t2.1		2780114,2779432,2778987,2778443,2777271	2780408,2779553,2779069,2778526,2778189	
chr4	2777048	2780408	2778111	2780200	-	Cre04.g223800.t1.2	Cre04.g223800.t1.2		2780114,2779432,2778987,2778443,2777048	2780408,2779553,2779069,2778526,2778189	
chr4	2780537	2783387	2780693	2783318	+	HEL23	Cre04.g223850.t1.2		2780537,2780862,2781056,2781211,2781348,2781620,2781938,2782141,2782347,2782585,2782960,2783239	2780762,2780970,2781127,2781264,2781406,2781799,2782008,2782206,2782431,2782795,2783122,2783387	Cytoplasmic DExD/H-box helicase, stimulates mRNA 5'-decapping. Homologue of S. cerevisiae Dhh1. Might be involved in the translational control of some specific mRNAs.
chr4	2783436	2786405	2783436	2783623	+	Cre04.g223876.t1.1	Cre04.g223876.t1.1		2783436	2786405	
chr4	2787956	2798020	2788382	2797886	+	Cre04.g223900.t1.1	Cre04.g223900.t1.1		2787956,2788336,2788633,2789041,2789414,2789921,2790471,2790820,2791225,2791681,2792382,2792738,2793200,2793676,2794044,2794423,2795104,2795893,2796354,2796960,2797529	2788234,2788388,2788840,2789093,2789482,2790034,2790533,2790888,2791342,2791808,2792477,2792812,2793277,2793729,2794112,2794719,2795308,2795972,2796694,2797083,2798020	
chr4	2798140	2808095	2798731	2808010	-	Cre04.g224002.t1.1	Cre04.g224002.t1.1		2807972,2807224,2806513,2805860,2805306,2804929,2804316,2802289,2801362,2800855,2800400,2799564,2799254,2798140	2808095,2807809,2806890,2805946,2805396,2805055,2804403,2802342,2801885,2800994,2800665,2800067,2799313,2798980	
chr4	2808206	2814205	2808829	2814092	-	URN2	Cre04.g224100.t1.2		2814025,2813422,2812967,2812523,2812101,2811636,2811083,2810563,2809577,2809310,2808206	2814205,2813486,2813018,2812654,2812230,2811751,2811114,2810622,2809975,2809411,2808979	
chr4	2808206	2814575	2808829	2814092	-	URN2	Cre04.g224100.t2.1		2814025,2813422,2812967,2812523,2812101,2811636,2811083,2810563,2809577,2809310,2808206	2814575,2813486,2813018,2812654,2812230,2811751,2811114,2810622,2809975,2809411,2808979	
chr4	2814666	2823497	2814950	2822904	+	Cre04.g224150.t1.2	Cre04.g224150.t1.2		2814666,2815551,2816065,2816902,2817514,2817894,2818167,2818635,2819291,2819556,2819835,2820321,2820775,2821257,2821687,2822047,2822523,2822812	2815096,2815617,2816136,2816981,2817640,2817999,2818310,2818790,2819488,2819592,2819995,2820428,2820884,2821298,2821812,2822208,2822598,2823497	
chr4	2826125	2839335	2827430	2838900	-	Cre04.g224200.t1.2	Cre04.g224200.t1.2		2838770,2838264,2837030,2836621,2836234,2835925,2835577,2835144,2834783,2834350,2834104,2833619,2833363,2833087,2832792,2832516,2832243,2832008,2831538,2831189,2830769,2830377,2829972,2829628,2829273,2828822,2828397,2827989,2827721,2826125	2839335,2838347,2837100,2836815,2836305,2836021,2835725,2835369,2834889,2834493,2834162,2833745,2833424,2833179,2832879,2832570,2832413,2832048,2831757,2831289,2830843,2830435,2830083,2829751,2829352,2828919,2828525,2828120,2827793,2827508	null-allele passenger mutation was isolated (PMID 29743196)
chr4	2840370	2846735	2840714	2846566	-	FAP147	Cre04.g224250.t1.1		2846312,2845808,2845511,2845135,2844918,2844506,2844110,2843794,2843353,2842334,2842087,2841285,2840370	2846735,2846011,2845581,2845220,2845001,2844699,2844167,2843871,2843493,2843023,2842180,2841934,2841041	Flagellar Associated Protein weakly similar to Myc-binding protein-associated protein; found in the flagellar proteome; identified by comparative genomics as being present only in organisms having motile cilia; gene conserved only in orga
chr4	2847936	2851825	2848502	2851548	-	CGL84	Cre04.g224300.t1.1		2851464,2851176,2850888,2850559,2850253,2849928,2849662,2849384,2849108,2848851,2847936	2851825,2851220,2850998,2850692,2850361,2850057,2849734,2849465,2849158,2848968,2848621	Conserved in green algae and plants
chr4	2851950	2856945	2852967	2856331	-	MOT55	Cre04.g224350.t1.1		2856172,2855872,2855622,2855348,2854900,2854546,2854254,2853885,2853642,2853349,2851950	2856945,2855916,2855732,2855481,2855008,2854675,2854326,2853966,2853692,2853466,2853086	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr4	2857046	2872994	2857295	2871860	+	Cre04.g224400.t1.1	Cre04.g224400.t1.1		2857046,2857997,2858580,2859003,2859352,2859646,2859917,2860607,2861240,2861583,2861999,2862456,2862916,2863280,2863600,2863912,2864325,2864597,2864853,2865082,2865404,2865635,2866022,2866299,2866687,2866889,2867174,2867560,2867851,2868199,2868434,2868730,2869153,2869418,2869747,2870037,2870373,2870802,2871153,2871460,2871754	2857721,2858044,2858699,2859173,2859429,2859708,2860285,2860831,2861379,2861780,2862118,2862514,2863124,2863330,2863644,2864021,2864397,2864664,2864932,2865235,2865519,2865747,2866135,2866493,2866751,2866964,2867432,2867674,2867953,2868249,2868557,2868978,2869256,2869477,2869871,2870110,2870551,2870960,2871327,2871508,2872994	null-allele mutant was isolated (PMID 29743196)
chr4	2873055	2886235	2874212	2885813	-	Cre04.g224450.t1.1	Cre04.g224450.t1.1		2885645,2884856,2884445,2884099,2883702,2883397,2882835,2882534,2882254,2882015,2881609,2880823,2879951,2879521,2879180,2877968,2877634,2875340,2874999,2873055	2886235,2885517,2884528,2884180,2883926,2883447,2883193,2882607,2882358,2882085,2881846,2881478,2880610,2879614,2879324,2878859,2877723,2876272,2875073,2874725	
chr4	2886320	2901605	2887482	2901343	-	Cre04.g224500.t1.1	Cre04.g224500.t1.1		2901133,2900917,2900556,2900102,2899767,2899500,2898877,2898422,2897999,2897598,2897268,2897022,2896729,2896479,2896175,2895845,2895608,2895391,2895064,2894030,2893638,2893347,2892983,2892652,2892304,2892036,2891652,2891367,2891095,2890793,2890372,2890089,2889846,2889505,2889221,2888717,2888276,2887843,2886320	2901605,2900964,2900675,2900272,2899844,2899562,2899251,2898646,2898138,2897795,2897384,2897080,2896851,2896567,2896270,2895954,2895680,2895458,2895143,2894183,2893753,2893459,2893120,2892753,2892368,2892111,2891844,2891481,2891197,2890967,2890620,2890192,2889905,2889629,2889294,2888895,2888434,2888017,2887637	null-allele passenger mutation was isolated (PMID 29743196)
chr4	2902210	2909405	2903320	2909308	-	Cre04.g224550.t1.2	Cre04.g224550.t1.2		2909073,2908611,2908180,2907863,2907387,2906845,2906094,2905448,2905117,2904819,2904466,2904037,2903775,2902210	2909405,2908710,2908211,2907901,2907519,2906923,2906188,2905508,2905174,2904877,2904561,2904179,2903870,2903444	
chr4	2902210	2909305	2903320	2909050	-	Cre04.g224550.t2.1	Cre04.g224550.t2.1		2909028,2908611,2908180,2907863,2907387,2906845,2906094,2905448,2905117,2904819,2904466,2904037,2903775,2902210	2909305,2908710,2908211,2907901,2907519,2906923,2906188,2905508,2905174,2904877,2904561,2904179,2903870,2903444	
chr4	2923727	2928722	2925638	2928506	-	Cre04.g224600.t1.2	Cre04.g224600.t1.2		2927716,2926601,2923727	2928722,2927400,2926331	
chr4	2928803	2934741	2929093	2934416	-	FAP296	Cre04.g224650.t1.1		2934337,2933890,2933502,2932675,2932442,2932029,2931503,2931277,2930871,2930472,2930124,2929881,2929525,2928803	2934741,2934042,2933611,2932806,2932481,2932174,2931678,2931355,2930990,2930522,2930195,2929938,2929631,2929273	Flagellar Associated Protein similar to importin alpha, found in the flagellar proteome
chr4	2935173	2938494	2935432	2938416	+	Cre04.g224667.t1.1	Cre04.g224667.t1.1		2935173,2936187,2937760	2935475,2936333,2938494	
chr4	2935278	2936152	2935319	2936110	-	Cre04.g224683.t1.1	Cre04.g224683.t1.1		2935945,2935645,2935453,2935278	2936152,2935746,2935493,2935350	
chr4	2940037	2950771	2941571	2950604	-	NRT1.1	Cre04.g224700.t1.2		2950501,2950368,2950192,2949238,2948571,2948203,2947760,2947112,2946605,2946346,2945720,2945157,2944707,2944323,2943738,2943272,2942866,2941875,2940037	2950771,2950401,2950261,2949351,2948756,2948332,2947883,2947433,2946685,2946407,2945900,2945208,2944888,2944397,2943833,2943355,2942967,2942046,2941669	
chr4	2951376	2954478	2951726	2954049	+	VAM1	Cre04.g224750.t1.2		2951376,2952055,2952209,2952506,2952961,2953435,2953744,2953958	2951840,2952060,2952269,2952644,2953039,2953539,2953805,2954478	Expressed Protein. Similar to VAMP7 R-SNAREs, involved in Golgi/PM and Golgi/endosomal trafficking; most similar to VAMP72-family of land plants, part of 4-member gene family in Chlamydomonas all on same scaffold and in 2 tandem arrays (74-> <-71; and <-73 72->), location and order of gene family members are syntenic in Volvox. Has a 4-nucleotide exon, supported by multiple cDNA sequences.
chr4	2954523	2957612	2955552	2957495	-	VAM4	Cre04.g224800.t1.2		2957437,2956671,2956273,2955982,2954523	2957612,2956793,2956493,2956086,2955705	Expressed Protein. Similar to VAMP7 R-SNAREs, involved in Golgi/PM and Golgi/endosomal trafficking; most similar to VAMP72-family of land plants, part of 4-member gene family in Chlamydomonas all on same scaffold and in 2 tandem arrays (74-> <-71; and <-73 72->), location and order of gene family members are syntenic in Volvox
chr4	2959169	2962382	2962069	2962262	-	Cre04.g224826.t1.1	Cre04.g224826.t1.1		2959169	2962382	
chr4	2962437	2965042	2962553	2964569	-	Cre04.g224850.t1.1	Cre04.g224850.t1.1		2964464,2962437	2965042,2964374	
chr4	2976747	2978517	2977111	2978432	-	Cre04.g224867.t1.1	Cre04.g224867.t1.1		2976747	2978517	
chr4	2980359	2984752	2982402	2983882	-	Cre04.g224883.t1.1	Cre04.g224883.t1.1		2984001,2980359	2984752,2983887	
chr4	2985052	2987832	2986382	2987153	-	Cre04.g224899.t1.1	Cre04.g224899.t1.1		2987047,2985052	2987832,2986645	
chr4	2988216	2993427	2989062	2991755	+	Cre04.g224915.t1.1	Cre04.g224915.t1.1		2988216,2988989,2989540,2990111,2990599,2991007,2991729	2988937,2989351,2989833,2990445,2990846,2991227,2993427	
chr4	2993118	2997672	2994559	2997570	-	Cre04.g224931.t1.1	Cre04.g224931.t1.1		2997442,2997170,2996690,2996336,2995693,2995262,2993118	2997672,2997226,2996900,2996554,2996192,2995532,2995042	
chr4	2993457	2997672	2994559	2997570	-	Cre04.g224931.t2.1	Cre04.g224931.t2.1		2997442,2997170,2996690,2996336,2995693,2995262,2993457	2997672,2997226,2996900,2996554,2996192,2995532,2995042	
chr4	2997118	2997672	2997165	2997570	-	Cre04.g224931.t3.1	Cre04.g224931.t3.1		2997442,2997118	2997672,2997226	
chr4	2997873	3000847	2998053	3000218	+	Cre04.g224947.t1.1	Cre04.g224947.t1.1		2997873,2998848,2999062,2999434,2999809,3000077	2998661,2998921,2999300,2999628,2999880,3000847	
chr4	3001900	3017865	3003153	3017660	-	Cre04.g225000.t1.1	Cre04.g225000.t1.1		3017610,3017372,3017142,3016684,3015857,3015549,3014837,3014348,3014101,3013985,3013346,3012675,3011743,3011332,3011035,3010418,3007609,3001900	3017865,3017422,3017219,3016910,3016448,3015621,3015327,3014513,3014229,3014031,3013475,3012836,3012336,3011450,3011089,3010732,3010172,3007300	
chr4	3001900	3017865	3003153	3017660	-	Cre04.g225000.t2.1	Cre04.g225000.t2.1		3017610,3017372,3017142,3016684,3015857,3015549,3014837,3014348,3014114,3013346,3012675,3011743,3011332,3011035,3010418,3007576,3001900	3017865,3017422,3017219,3016910,3016448,3015621,3015327,3014513,3014229,3013475,3012836,3012336,3011450,3011089,3010732,3010172,3007300	
chr4	3001900	3017865	3003153	3017660	-	Cre04.g225000.t3.1	Cre04.g225000.t3.1		3017610,3017372,3017142,3016684,3015857,3015549,3014837,3014348,3014114,3013346,3012675,3011743,3011332,3011035,3010418,3007609,3001900	3017865,3017422,3017219,3016910,3016448,3015621,3015327,3014513,3014229,3013475,3012836,3012336,3011450,3011089,3010732,3010172,3007300	
chr4	3018006	3022047	3018058	3020976	+	Cre04.g225050.t1.1	Cre04.g225050.t1.1		3018006,3019042,3019419,3019957,3020296,3020901	3018344,3019135,3019526,3020017,3020358,3022047	
chr4	3022676	3029957	3022876	3029744	+	Cre04.g225100.t1.1	Cre04.g225100.t1.1		3022676,3026260,3026556,3027126,3028254,3029003,3029198	3025870,3026286,3026863,3028011,3028532,3029032,3029957	
chr4	3030006	3036637	3030350	3034849	+	Cre04.g225150.t1.1	Cre04.g225150.t1.1		3030006,3031681	3031427,3036637	
chr4	3036644	3038595	3037521	3037738	-	Cre04.g225176.t1.1	Cre04.g225176.t1.1		3038022,3036644	3038595,3037767	
chr4	3038950	3054905	3040454	3054750	-	FAP311	Cre04.g225200.t1.1		3054736,3054572,3054407,3053928,3052677,3052143,3051583,3051367,3051159,3050794,3050440,3050211,3049841,3049413,3048914,3048507,3048275,3047928,3047488,3046936,3046289,3045832,3044995,3044555,3043862,3043291,3042804,3042075,3041049,3040836,3038950	3054905,3054577,3054459,3053984,3053383,3052267,3051760,3051402,3051200,3050847,3050547,3050301,3049893,3049487,3048991,3048677,3048339,3048063,3047612,3047041,3046471,3045911,3045277,3044647,3044299,3043393,3042904,3042146,3041138,3040880,3040493	
chr4	3054959	3063805	3056547	3063032	-	Cre04.g225250.t1.1	Cre04.g225250.t1.1		3063505,3063336,3062794,3062326,3061818,3061188,3060667,3060264,3059875,3059537,3059258,3058934,3058581,3058145,3054959	3063805,3063366,3063129,3062570,3061937,3061571,3060831,3060318,3059956,3059651,3059324,3058965,3058641,3058321,3057056	
chr4	3063860	3069375	3064321	3068759	-	Cre04.g225301.t1.1	Cre04.g225301.t1.1		3068506,3068347,3067373,3065601,3065256,3064807,3063860	3069375,3068406,3068212,3067300,3065454,3065129,3064675	
chr4	3069859	3078755	3070660	3078661	-	Cre04.g225350.t1.1	Cre04.g225350.t1.1		3078633,3078474,3078124,3077977,3077580,3077358,3077103,3076678,3076313,3075856,3075323,3074702,3074251,3072027,3071642,3069859	3078755,3078565,3078374,3078038,3077762,3077414,3077189,3076886,3076388,3076001,3075577,3075123,3074437,3074063,3071752,3070987	
chr4	3069859	3078755	3070660	3078661	-	Cre04.g225350.t2.1	Cre04.g225350.t2.1		3078633,3078474,3078124,3077989,3077580,3077358,3077103,3076678,3076313,3075856,3075323,3074702,3074251,3072027,3071642,3069859	3078755,3078565,3078374,3078038,3077762,3077414,3077189,3076886,3076388,3076001,3075577,3075123,3074437,3074063,3071752,3070987	
chr4	3078906	3083763	3079051	3082904	+	Cre04.g225400.t1.2	Cre04.g225400.t1.2		3078906,3079377,3079798,3080242,3081305,3081650,3082060,3082523,3082847	3079162,3079536,3079840,3080371,3081487,3081772,3082131,3082600,3083763	
chr4	3087841	3089565	3088535	3089003	-	FDX10	Cre04.g225450.t1.2		3089246,3088909,3087841	3089565,3089007,3088834	
chr4	3089696	3093050	3089830	3092233	+	Cre04.g225500.t1.2	Cre04.g225500.t1.2		3089696,3090961,3091819,3092233	3090631,3091541,3091910,3093050	
chr4	3089696	3093050	3089830	3092233	+	Cre04.g225500.t2.1	Cre04.g225500.t2.1		3089696,3090961,3091776,3092233	3090631,3091541,3091910,3093050	
chr4	3093704	3095690	3094824	3095590	-	CGL104	Cre04.g225600.t1.1		3093704	3095690	Conserved in the Green Lineage
chr4	3095862	3097594	3096356	3097517	-	Cre04.g225650.t1.2	Cre04.g225650.t1.2		3097310,3096730,3095862	3097594,3096810,3096476	
chr4	3097696	3102037	3097727	3101318	+	Cre04.g225700.t1.2	Cre04.g225700.t1.2		3097696,3097973,3098553,3099086,3099538,3100085,3101163	3097796,3098095,3098657,3099202,3099630,3100214,3102037	
chr4	3102311	3111525	3103403	3110854	-	Cre04.g225750.t1.1	Cre04.g225750.t1.1		3110610,3109975,3109110,3108689,3108142,3107654,3107160,3106740,3105921,3105657,3104996,3104346,3103784,3102311	3111525,3109989,3109219,3108742,3108249,3107758,3107294,3106855,3106026,3105713,3105085,3104393,3103891,3103565	
chr4	3102311	3111525	3103403	3110854	-	Cre04.g225750.t2.1	Cre04.g225750.t2.1		3110610,3109110,3108689,3108142,3107654,3107160,3106740,3105921,3105657,3104996,3104346,3103784,3102311	3111525,3109219,3108742,3108249,3107758,3107294,3106855,3106026,3105713,3105085,3104393,3103891,3103565	
chr4	3111648	3113459	3112092	3112537	+	Cre04.g225776.t1.1	Cre04.g225776.t1.1		3111648,3112537	3112367,3113459	
chr4	3114130	3123485	3116233	3123454	-	CPLD71	Cre04.g225800.t1.2		3123289,3122713,3120562,3118597,3117513,3116902,3116632,3114130	3123485,3123054,3122483,3120393,3118452,3117168,3116754,3116434	Conserved in the Plant Lineage and Diatoms
chr4	3127413	3130545	3128160	3130293	-	VAM3	Cre04.g225850.t1.2		3130112,3129682,3129229,3128708,3128405,3127413	3130545,3129826,3129307,3128812,3128466,3128251	Expressed Protein. Similar to VAMP7 R-SNAREs, involved in Golgi/PM and Golgi/endosomal trafficking; most similar to VAMP72-family of land plants, part of 4-member gene family in Chlamydomonas all on same scaffold and in 2 tandem arrays (74-> <-71; and <-73 72->), location and order of gene family members are syntenic in Volvox
chr4	3130656	3133423	3130749	3132411	+	VAMP72	Cre04.g225900.t1.2		3130656,3131042,3131372,3131779,3132064,3132317	3130930,3131180,3131450,3131883,3132125,3133423	
chr4	3133666	3139555	3134297	3138519	+	Cre04.g225950.t1.2	Cre04.g225950.t1.2		3133666,3134141,3136040,3136352,3136656,3137025,3137688	3133964,3135737,3136120,3136471,3136729,3137385,3139555	
chr4	3139560	3145075	3140087	3144573	-	Cre04.g226001.t1.1	Cre04.g226001.t1.1		3144078,3143478,3142883,3142499,3142010,3141160,3139560	3145075,3143714,3143281,3142647,3142190,3141465,3140849	
chr4	3145280	3152013	3146055	3151557	-	ARS10	Cre04.g226050.t1.1		3151715,3151499,3151185,3150839,3150580,3150221,3149685,3149282,3148924,3148420,3147556,3147174,3146880,3146518,3145280	3152013,3151565,3151301,3150900,3150647,3150299,3149806,3149414,3149068,3148543,3148224,3147311,3146978,3146732,3146231	
chr4	3152186	3160267	3157299	3159617	+	Cre04.g226100.t1.1	Cre04.g226100.t1.1		3152186,3156898,3157052,3157286,3157616,3157938,3158101,3158429,3158636,3158798	3152553,3156921,3157075,3157513,3157814,3158019,3158271,3158551,3158713,3160267	
chr4	3156366	3160267	3157299	3159617	+	Cre04.g226100.t2.1	Cre04.g226100.t2.1		3156366,3156898,3157052,3157286,3157616,3157938,3158101,3158429,3158636,3158798	3156573,3156921,3157075,3157513,3157814,3158019,3158271,3158551,3158713,3160267	
chr4	3162076	3164929	3162193	3164187	+	Cre04.g226114.t1.1	Cre04.g226114.t1.1		3162076,3163518,3164128	3162233,3163667,3164929	
chr4	3165050	3170325	3167855	3168123	-	Cre04.g226126.t1.1	Cre04.g226126.t1.1		3169547,3165050	3170325,3168909	
chr4	3172246	3173161	3172796	3172971	+	Cre04.g226138.t1.1	Cre04.g226138.t1.1		3172246,3172554	3172264,3173161	
chr4	3173896	3182021	3174230	3180127	+	AOC1	Cre04.g226150.t1.1		3173896,3174624,3175026,3175283,3175747,3176158,3176693,3177046,3177325,3177703,3178193,3178495,3178888,3179493,3179959	3174362,3174827,3175101,3175430,3175822,3176310,3176870,3177137,3177432,3177770,3178256,3178579,3179052,3179608,3182021	amino acid carrier 1; belongs to APC (Amino acid Polyamine organoCation) family
chr4	3182193	3184345	3183057	3183286	-	Cre04.g226176.t1.1	Cre04.g226176.t1.1		3184096,3182193	3184345,3183438	
chr4	3184836	3195022	3185141	3194013	+	Cre04.g226200.t1.1	Cre04.g226200.t1.1		3184836,3185391,3185771,3186171,3186951,3187402,3188402,3188710,3189215,3189627,3191873	3185245,3185466,3185899,3186278,3187012,3187891,3188496,3188859,3189384,3191637,3195022	
chr4	3196269	3197150	3196629	3196897	+	Cre04.g226226.t1.1	Cre04.g226226.t1.1		3196269	3197150	
chr4	3197166	3204137	3199303	3203921	-	Cre04.g226250.t1.1	Cre04.g226250.t1.1		3203737,3203555,3202862,3202593,3201943,3201229,3197166	3204137,3203596,3202894,3202643,3202333,3201781,3200878	
chr4	3197166	3200998	3199303	3200885	-	Cre04.g226250.t2.1	Cre04.g226250.t2.1		3197166	3200998	
chr4	3201045	3204137	3201147	3203921	-	Cre04.g226250.t3.1	Cre04.g226250.t3.1		3203737,3203555,3202862,3202593,3201943,3201045	3204137,3203596,3202894,3202643,3202333,3201781	
chr4	3205019	3206240	3205317	3205592	+	Cre04.g226301.t1.1	Cre04.g226301.t1.1		3205019,3205430	3205347,3206240	
chr4	3207179	3208758	3207426	3208065	+	CSB23	Cre04.g226350.t1.2		3207179,3207645,3207909	3207478,3207793,3208758	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr4	3207179	3208758	3207426	3208065	+	CSB23	Cre04.g226350.t2.1		3207179,3207909	3207561,3208758	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr4	3209149	3212502	3209320	3211300	+	Cre04.g226400.t1.2	Cre04.g226400.t1.2		3209149,3209436,3209930,3210335	3209365,3209525,3210059,3212502	
chr4	3212594	3222908	3213529	3222662	-	PRP17	Cre04.g226450.t1.1		3222639,3222417,3221049,3220622,3219869,3219184,3218705,3218351,3217871,3217486,3217088,3216328,3215698,3215174,3214503,3213970,3212594	3222908,3222522,3221118,3220684,3220024,3219290,3218797,3218423,3217937,3217579,3217219,3216450,3215797,3215307,3214598,3214082,3213710	Homologue of yeast PRP17, which is required specifically for the second step of splicing; contains WD-40 repeats.
chr4	3223079	3226237	3223167	3225070	+	Cre04.g226500.t1.1	Cre04.g226500.t1.1		3223079,3223772,3224031,3224660,3225001	3223389,3223879,3224180,3224749,3226237	
chr4	3226589	3234190	3227009	3233595	+	ARS11	Cre04.g226550.t1.2		3226589,3227341,3227550,3227963,3228293,3228869,3229297,3229553,3229889,3230260,3230570,3230817,3231140,3231668,3232637,3232956,3233297	3227030,3227407,3227666,3228024,3228360,3229022,3229343,3229685,3229953,3230339,3230664,3230845,3231493,3232051,3232774,3233054,3234190	
chr4	3226589	3233847	3227009	3233595	+	ARS11	Cre04.g226550.t2.1		3226589,3227341,3227550,3227963,3228293,3228869,3229297,3229553,3229889,3230260,3230570,3230817,3231140,3231668,3232637,3232956,3233297	3227030,3227407,3227666,3228024,3228360,3229022,3229343,3229685,3229953,3230339,3230664,3230845,3231493,3232051,3232774,3233054,3233847	
chr4	3234701	3240148	3235749	3239692	-	ARS12	Cre04.g226600.t1.1		3239274,3238902,3238613,3238198,3237794,3237419,3236913,3236344,3234701	3240148,3239093,3238707,3238346,3237989,3237575,3237140,3236711,3236103	
chr4	3244339	3250690	3244781	3250380	+	Cre04.g226650.t1.1	Cre04.g226650.t1.1		3244339,3245149,3247862,3248274	3245085,3247623,3247953,3250690	null-allele mutant was isolated (PMID 29743196)
chr4	3251423	3273768	3252894	3273533	-	Cre04.g226700.t1.2	Cre04.g226700.t1.2		3273414,3272992,3272596,3271436,3270447,3269834,3269244,3268748,3266318,3261644,3261094,3260788,3260520,3259908,3259523,3259244,3256224,3251423	3273768,3273082,3272705,3272432,3271123,3270245,3269489,3268978,3268528,3266086,3261444,3260895,3260620,3260255,3259658,3259386,3258991,3256010	
chr4	3274623	3278558	3275033	3278331	-	Cre04.g226750.t1.2	Cre04.g226750.t1.2		3278247,3277801,3277602,3277253,3276739,3276425,3276091,3275671,3275360,3274623	3278558,3277967,3277651,3277328,3276987,3276497,3276245,3275824,3275490,3275166	null-allele mutant was isolated (PMID 29743196)
chr4	3282289	3283560	3282671	3283341	+	Cre04.g226800.t1.1	Cre04.g226800.t1.1		3282289,3282796,3282952,3283206	3282713,3282852,3283113,3283560	
chr4	3283609	3285568	3284472	3284809	+	Cre04.g226811.t2.1	Cre04.g226811.t2.1		3283609,3284337	3284194,3285568	
chr4	3282289	3285568	3284472	3284809	+	Cre04.g226811.t1.2	Cre04.g226811.t1.2		3282289,3282796,3282952,3283206,3283697,3284337	3282713,3282852,3283113,3283396,3284194,3285568	
chr4	3285651	3291728	3286181	3291556	-	ASP1	Cre04.g226850.t1.2		3291334,3290695,3290231,3289910,3289585,3289144,3288807,3288375,3288063,3287323,3287082,3286779,3285651	3291728,3290856,3290320,3289987,3289676,3289236,3288891,3288431,3288182,3287687,3287178,3286895,3286340	Aspartic protease, pepsin (A1) family; directed to secretory pathway; previously identified by Almeida, C.M.(23) Thesis, Department of Zoologia, University of Coimbra, Coimbra, Portugal (Accession number CAE18153)
chr4	3291783	3295608	3293250	3295477	-	Cre04.g226900.t1.2	Cre04.g226900.t1.2		3295406,3295169,3294696,3294192,3293551,3291783	3295608,3295336,3294906,3294361,3293575,3293325	
chr4	3296030	3298488	3297227	3298373	-	Cre04.g226926.t1.1	Cre04.g226926.t1.1		3298370,3296030	3298488,3297389	
chr4	3298743	3300908	3299064	3300672	-	Cre04.g226950.t1.2	Cre04.g226950.t1.2		3300588,3300152,3299659,3298743	3300908,3300285,3299965,3299361	
chr4	3301539	3313190	3301732	3311659	+	MLH2	Cre04.g227000.t1.1		3301539,3302057,3302401,3303447,3303909,3304337,3304688,3305096,3306078,3306921,3307363,3307759,3309338,3309736,3310038,3310271,3311143,3311564	3301894,3302134,3302454,3303569,3304001,3304390,3304735,3305661,3306173,3307050,3307407,3309108,3309517,3309804,3310165,3310930,3311243,3313190	MutL homolog; belongs to the Mlh2/Pms1/Pms2 family [see PMID: 17992532].  Homolog of MutL, which forms a complex with MutS
chr4	3313249	3320897	3313676	3319005	+	Cre04.g227050.t1.1	Cre04.g227050.t1.1		3313249,3313976,3314419,3314678,3315815,3317795,3318347,3318798	3313770,3314100,3314507,3315505,3317656,3318098,3318466,3320897	
chr4	3313249	3320897	3313676	3318503	+	Cre04.g227050.t2.1	Cre04.g227050.t2.1		3313249,3313976,3314419,3314678,3315815,3317795,3318347	3313770,3314100,3314507,3315505,3317656,3318098,3320897	
chr4	3321169	3328820	3321853	3325912	+	Cre04.g227200.t1.1	Cre04.g227200.t1.1		3321169,3321825,3322178,3322416,3323481,3325374,3325908	3321627,3321949,3322266,3323192,3325211,3325676,3328820	
chr4	3329883	3342108	3331706	3341967	-	Cre04.g227251.t1.1	Cre04.g227251.t1.1		3341542,3341324,3341122,3340386,3338436,3337521,3337016,3336196,3335816,3335160,3334060,3333736,3333364,3333091,3332623,3332310,3329883	3342108,3341408,3341204,3340965,3340067,3338289,3337340,3336846,3336071,3335383,3334873,3333849,3333578,3333202,3332729,3332379,3331997	
chr4	3344183	3346478	3344261	3345821	-	Cre04.g227301.t1.1	Cre04.g227301.t1.1		3346219,3345958,3345127,3344469,3344183	3346478,3346014,3345842,3345058,3344261	
chr4	3347699	3354920	3347834	3354356	+	CCR4	Cre04.g227350.t1.1		3347699,3348013,3348203,3348678,3349054,3349569,3349896,3350425,3350991,3351405,3352103,3352300,3352827,3353315,3353754,3354218	3347927,3348131,3348410,3348713,3349149,3349646,3349964,3350586,3351198,3351832,3352160,3352570,3352914,3353413,3353912,3354920	Belongs to the CNOT2/3/5 family of transcription regulation complexes
chr4	3355079	3363615	3355688	3363080	+	FRE1	Cre04.g227400.t1.2		3355079,3355537,3356086,3356608,3356955,3357287,3357468,3357998,3358351,3358661,3359147,3359532,3359874,3360420,3360760,3361336,3361992,3362278,3362623	3355307,3355811,3356217,3356766,3357099,3357340,3357747,3358123,3358428,3358774,3359250,3359740,3360143,3360578,3360956,3361752,3362091,3362417,3363615	homolog to FRO1 in Arabidopsis; null-allele passenger mutation was isolated (PMID 29743196)
chr4	3363721	3369868	3364263	3369704	-	Cre04.g227450.t1.2	Cre04.g227450.t1.2		3369595,3368720,3367961,3367197,3366978,3366594,3366062,3365671,3365112,3364733,3363721	3369868,3368861,3368070,3367255,3367062,3366649,3366275,3365690,3365193,3364774,3364562	
chr4	3370359	3398543	3372319	3398409	-	SRR18	Cre04.g227500.t1.1		3398327,3398099,3397603,3397196,3396866,3396267,3395795,3395179,3394621,3394046,3393616,3393228,3392859,3392541,3392103,3390985,3389376,3387959,3383582,3383386,3382988,3382771,3382445,3381416,3381167,3380856,3380567,3380306,3376854,3376421,3376063,3375795,3375479,3375041,3370359	3398543,3398189,3397737,3397265,3396887,3396589,3395869,3395355,3394759,3394191,3393804,3393358,3392908,3392665,3392342,3391929,3389641,3389180,3387842,3383448,3383193,3382851,3382549,3382289,3381267,3380936,3380653,3380382,3380136,3376531,3376235,3375847,3375593,3375146,3374722	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912); null-allele mutant was isolated (PMID 29743196)
chr4	3398638	3401333	3400707	3401308	-	Cre04.g227526.t1.1	Cre04.g227526.t1.1		3401227,3401076,3398638	3401333,3401149,3400921	
chr4	3401764	3412665	3401943	3412644	+	Cre04.g227550.t1.1	Cre04.g227550.t1.1		3401764,3402197,3402367,3402767,3403392,3404337,3407117,3407636,3408064,3408543	3402054,3402271,3402570,3403224,3404211,3406956,3407406,3407785,3408225,3412665	
chr4	3412714	3416028	3412838	3413427	+	Cre04.g227568.t1.2	Cre04.g227568.t1.2		3412714	3416028	
chr4	3416265	3420653	3416604	3420457	-	Cre04.g227600.t1.2	Cre04.g227600.t1.2		3420249,3419770,3419403,3419226,3418926,3418739,3418419,3418176,3417859,3417400,3417167,3416265	3420653,3419848,3419461,3419264,3419012,3418798,3418486,3418250,3417904,3417454,3417218,3416751	null-allele mutant was isolated (PMID 29743196)
chr4	3427164	3442995	3427200	3442076	+	Cre04.g227650.t1.1	Cre04.g227650.t1.1		3427164,3427864,3428324,3430662,3431109,3431486,3431809,3435281,3435604,3439477,3440318,3441470	3427525,3427988,3429148,3430783,3431195,3431562,3434741,3435347,3439323,3440063,3441271,3442995	null-allele mutant was isolated (PMID 29743196)
chr4	3443164	3455565	3443706	3454764	+	Cre04.g227700.t1.1	Cre04.g227700.t1.1		3443164,3443706,3444117,3444625,3445005,3445406,3445587,3446366,3446663,3446986,3447247,3447709,3447996,3448317,3448711,3449023,3449450,3449800,3450121,3450507,3450956,3451778,3452022,3452247,3452525,3452993,3453363,3453776,3454243	3443498,3443855,3444270,3444675,3445067,3445431,3445647,3446462,3446726,3447034,3447304,3447796,3448050,3448412,3448794,3449104,3449612,3449862,3450229,3450617,3451623,3451850,3452069,3452345,3452638,3453093,3453432,3453884,3455565	
chr4	3455568	3463803	3455871	3463464	-	Cre04.g227750.t1.1	Cre04.g227750.t1.1		3463363,3463161,3462139,3461619,3461294,3460791,3458896,3458113,3456783,3456092,3455568	3463803,3463286,3462955,3461963,3461371,3461065,3460590,3458659,3457915,3456371,3455910	
chr4	3463908	3477553	3464479	3477444	-	Cre04.g227800.t1.1	Cre04.g227800.t1.1		3477371,3477115,3476876,3476391,3476080,3475604,3475323,3474883,3474506,3474087,3473655,3473092,3470929,3470690,3470391,3467991,3467703,3467296,3466640,3466336,3466058,3465754,3465419,3465111,3464815,3463908	3477553,3477188,3476963,3476550,3476141,3475921,3475412,3475080,3474742,3474305,3473882,3473472,3472865,3470742,3470460,3468273,3467776,3467363,3466916,3466486,3466138,3465848,3465504,3465201,3464821,3464553	
chr4	3477608	3484623	3480512	3484320	-	Cre04.g227850.t1.1	Cre04.g227850.t1.1		3484097,3483367,3482901,3482608,3482229,3481797,3477608	3484623,3483623,3483093,3482714,3482384,3481910,3481172	
chr4	3484724	3493020	3484891	3492326	+	PF20	Cre04.g227900.t1.2		3484724,3485062,3485272,3485963,3486691,3486910,3487538,3488207,3491181,3491823,3492218	3484971,3485131,3485487,3486100,3486743,3487006,3487852,3488350,3491319,3491932,3493020	WD-repeat containing protein PF20 of the central pair of the flagella; associates with the intermicrotubule bridge; may contain additional coding sequence in intronic N-island PMID: 27175017
chr4	3493038	3497593	3493562	3497191	-	Cre04.g227950.t1.1	Cre04.g227950.t1.1		3497167,3496863,3496555,3496181,3495806,3495409,3495040,3494655,3494452,3493926,3493038	3497593,3496934,3496622,3496280,3495829,3495442,3495130,3494731,3494495,3494251,3493575	
chr4	3498214	3512175	3498549	3511451	+	Cre04.g228000.t1.1	Cre04.g228000.t1.1		3498214,3498767,3499128,3499503,3501237,3501840,3502875,3503642,3504020,3504443,3505066,3505863,3507613,3507982,3508610,3508883,3509132,3509740,3510038,3510548	3498602,3498901,3499189,3500908,3501581,3502574,3503199,3503739,3504164,3504722,3505570,3507234,3507674,3508347,3508714,3508947,3509312,3509805,3510121,3512175	null-allele passenger mutation was isolated (PMID 29743196)
chr4	3512178	3514613	3512620	3514150	-	Cre04.g228050.t1.1	Cre04.g228050.t1.1		3514128,3513834,3512178	3514613,3513970,3513505	
chr4	3514834	3517785	3515700	3516474	+	Cre04.g228100.t1.1	Cre04.g228100.t1.1		3514834,3515669,3516015	3515209,3515754,3517785	
chr4	3517834	3526569	3517859	3525271	+	FAE1	Cre04.g228150.t1.2		3517834,3518324,3518736,3519014,3519309,3519851,3520190,3520680,3520955,3521270,3521769,3522135,3522288,3523280,3523680,3524179,3524587,3525156	3518045,3518389,3518813,3519085,3519466,3519899,3520261,3520721,3521016,3521383,3521847,3522170,3522999,3523361,3523761,3524214,3524714,3526569	similar to chalcone and stilbene synthases and related to polyketide synthases
chr4	3529518	3536103	3530575	3535623	-	Cre04.g228208.t1.2	Cre04.g228208.t1.2		3535857,3535374,3533066,3532800,3532583,3532397,3532067,3531813,3531630,3530802,3529518	3536103,3535684,3535160,3533008,3532674,3532424,3532156,3531947,3531689,3531170,3530599	null-allele mutant was isolated (PMID 29743196)
chr4	3529518	3536103	3530575	3535623	-	Cre04.g228208.t2.1	Cre04.g228208.t2.1		3535857,3535389,3533066,3532800,3532583,3532397,3532067,3531813,3531630,3530802,3529518	3536103,3535684,3535160,3533008,3532674,3532424,3532156,3531947,3531689,3531170,3530599	null-allele mutant was isolated (PMID 29743196)
chr4	3538726	3540413	3539728	3540216	-	CSB24	Cre04.g228250.t1.1		3540192,3539967,3538726	3540413,3540077,3539851	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr4	3540468	3548893	3542896	3548411	-	Cre04.g228300.t1.1	Cre04.g228300.t1.1		3548336,3545182,3544841,3544699,3544401,3544192,3544050,3543204,3540468	3548893,3547914,3544932,3544726,3544490,3544326,3544109,3543578,3542968	
chr4	3549995	3558086	3551672	3557928	-	DLA4	Cre04.g228350.t1.1		3557709,3557096,3556660,3555860,3555243,3554913,3554632,3554024,3553452,3552765,3552144,3549995	3558086,3557140,3556743,3556263,3555620,3554987,3554683,3554114,3553540,3552885,3552358,3551786	Dihydrolipoamide acetyltransferase; dihydrolipoyllysine-residue succinyltransferase
chr4	3560165	3564466	3560836	3564339	-	WRK1	Cre04.g228400.t1.1		3564183,3563939,3563544,3563133,3562952,3562701,3562380,3562062,3561694,3561180,3560165	3564466,3564073,3563623,3563265,3563032,3562839,3562562,3562263,3561899,3561580,3561040	
chr4	3560165	3564466	3560836	3564339	-	WRK1	Cre04.g228400.t2.1		3564183,3563939,3563544,3563133,3562952,3562701,3562380,3562062,3561694,3561180,3560165	3564466,3564070,3563623,3563265,3563032,3562839,3562562,3562263,3561899,3561580,3561040	
chr4	3564584	3569436	3564681	3569409	-	CPL10	Cre04.g228450.t1.2		3569258,3568699,3568380,3567942,3567508,3567032,3566667,3566253,3565867,3565171,3564584	3569436,3568751,3568419,3568009,3567606,3567082,3566745,3566292,3565936,3565277,3564745	Expressed protein of unknown function; possibly conserved in higher plants and cyanobacteria
chr4	3569911	3578396	3570694	3578111	-	Cre04.g228500.t1.2	Cre04.g228500.t1.2		3578003,3577034,3576713,3576223,3575481,3574787,3574448,3574187,3572605,3571973,3571590,3569911	3578396,3577096,3576792,3576343,3575543,3575044,3574520,3574269,3572775,3572317,3571684,3571373	
chr4	3579417	3601928	3579770	3601262	+	Cre04.g228550.t1.1	Cre04.g228550.t1.1		3579417,3580716,3581041,3581461,3581836,3582137,3582544,3582840,3583142,3583557,3583877,3584291,3584715,3585492,3586275,3586629,3587021,3587395,3587857,3588180,3588582,3589056,3589426,3590053,3590717,3592354,3592896,3593597,3593891,3594330,3595111,3596016,3596464,3597135,3597498,3597779,3598963,3600977	3580193,3580756,3581095,3581529,3581856,3582264,3582634,3582922,3583259,3583612,3584039,3584371,3585230,3586025,3586376,3586799,3587086,3587574,3587962,3588298,3588737,3589157,3589680,3590450,3592173,3592472,3593052,3593655,3594081,3594801,3595772,3596140,3596879,3597332,3597556,3598771,3600775,3601928	
chr4	3603427	3608008	3604120	3607609	+	Cre04.g228600.t1.1	Cre04.g228600.t1.1		3603427,3604026,3606763	3603673,3606499,3608008	
chr4	3608057	3611174	3608121	3608338	+	Cre04.g228625.t1.1	Cre04.g228625.t1.1		3608057	3611174	
chr4	3611941	3635046	3612596	3634950	-	Cre04.g228650.t1.2	Cre04.g228650.t1.2		3634835,3634557,3633871,3633574,3632860,3632446,3632022,3630896,3630406,3629961,3629522,3629025,3628494,3628182,3627652,3626848,3626501,3626039,3625777,3625252,3624288,3624025,3623797,3623478,3622730,3622226,3621869,3621511,3621174,3620730,3620261,3619854,3619498,3619094,3618626,3618357,3617906,3617559,3617148,3616724,3616153,3615668,3615096,3614593,3614076,3613444,3611941	3635046,3634663,3634204,3633629,3633216,3632589,3632107,3631058,3630507,3630107,3629573,3629143,3628548,3628225,3627699,3626961,3626560,3626144,3625896,3625376,3624408,3624093,3623881,3623544,3623135,3622345,3621987,3621561,3621266,3620782,3620324,3619919,3619593,3619159,3618757,3618420,3618098,3617622,3617216,3616813,3616289,3615765,3615142,3614697,3614210,3613827,3613097	
chr4	3636767	3641328	3636975	3640235	+	Cre04.g228675.t1.1	Cre04.g228675.t1.1		3636767,3637523,3638159,3638354	3637076,3637736,3638194,3641328	
chr4	3641377	3645338	3641491	3643776	+	Cre04.g228700.t1.1	Cre04.g228700.t1.1		3641377,3642199,3642672	3641525,3642341,3645338	
chr4	3645387	3648360	3645493	3647698	+	Cre04.g228750.t1.1	Cre04.g228750.t1.1		3645387,3645675,3646176,3646779,3647381	3645559,3645809,3646305,3646880,3648360	
chr4	3649997	3658384	3650731	3655777	+	Cre04.g228800.t1.1	Cre04.g228800.t1.1		3649997,3652460,3653121,3653445,3653867,3654344,3654902,3655699	3652141,3652612,3653219,3653525,3653980,3654427,3655420,3658384	
chr4	3658847	3668549	3659172	3667034	+	Cre04.g228850.t1.1	Cre04.g228850.t1.1		3658847,3664269,3664808,3665216,3665616,3665991,3666883	3664074,3664448,3664987,3665329,3665726,3666613,3668549	
chr4	3669379	3677496	3670159	3677398	-	Cre04.g228900.t1.1	Cre04.g228900.t1.1		3677269,3675424,3675036,3674729,3674434,3674085,3673715,3673216,3672673,3672240,3671670,3669379	3677496,3675521,3675096,3674797,3674517,3674132,3673782,3673255,3672786,3672304,3671725,3670182	related to NLI interacting factor
chr4	3679107	3681608	3679318	3680610	+	Cre04.g228925.t1.1	Cre04.g228925.t1.1		3679107,3679525,3679832,3680365,3680610	3679359,3679666,3680070,3680463,3681608	
chr4	3681657	3683268	3681778	3682589	+	Cre04.g228950.t1.2	Cre04.g228950.t1.2		3681657,3682104,3682379	3681981,3682194,3683268	
chr4	3683281	3689476	3683313	3689368	-	IPK1	Cre04.g229000.t1.1		3689290,3689033,3688619,3688110,3687618,3687149,3686843,3686269,3685873,3684965,3683281	3689476,3689126,3688698,3688218,3687835,3687247,3686951,3686526,3685967,3685576,3683466	converts 1,3,4,5,6-InsP5  to 1,3,4,5,6-InsP6
chr4	3691741	3692816	3692146	3692780	-	Cre04.g229026.t1.1	Cre04.g229026.t1.1		3691741	3692816	
chr4	3692871	3697306	3693147	3697254	-	Cre04.g229050.t1.1	Cre04.g229050.t1.1		3697058,3696886,3695815,3694919,3694471,3694228,3693902,3693267,3692871	3697306,3696927,3696207,3695685,3694569,3694323,3694070,3693744,3693147	
chr4	3697371	3699196	3697478	3698901	-	Cre04.g229100.t1.2	Cre04.g229100.t1.2		3698823,3698561,3698149,3697371	3699196,3698654,3698228,3697751	
chr4	3699297	3717978	3699369	3717006	+	Cre04.g229163.t1.1	Cre04.g229163.t1.1		3699297,3699563,3699856,3700205,3700415,3701986,3702606,3703163,3703457,3703837,3704445,3705215,3708131,3709389,3710404,3711019,3712023,3713381,3713755,3714191,3714536,3715169	3699430,3699645,3699906,3700263,3701571,3702101,3702683,3703243,3703545,3704011,3704543,3707680,3708832,3709511,3710536,3711148,3712233,3713483,3713842,3714326,3714609,3717978	
chr4	3718505	3721616	3719266	3720886	-	Cre04.g229226.t1.1	Cre04.g229226.t1.1		3721450,3720868,3719857,3718505	3721616,3721191,3720175,3719412	
chr4	3718505	3721526	3719266	3720886	-	Cre04.g229226.t2.1	Cre04.g229226.t2.1		3721340,3720868,3719857,3718505	3721526,3721191,3720175,3719412	
chr4	3721757	3726858	3722433	3726602	+	Cre04.g229250.t1.1	Cre04.g229250.t1.1		3721757,3722025,3725284,3725676,3726012	3721922,3724893,3725440,3725747,3726858	
chr4	3728598	3732872	3728645	3731946	+	RCA1	Cre04.g229300.t1.1		3728598,3728742,3728881,3729023,3729659,3730056,3730629,3731047,3731578,3731890	3728651,3728758,3728938,3729109,3729859,3730400,3730796,3731235,3731677,3732872	RubisCO activase, chloroplast precursor; required for optimal photosynthesis in a low CO2 atmosphere [PMID: 16667924; independent cDNA sequence: M62962].
chr4	3733547	3737892	3733809	3737359	+	Cre04.g229350.t1.2	Cre04.g229350.t1.2		3733547,3733953,3734225,3734644,3735054,3735757,3736112,3736444,3736607,3737047	3733880,3734041,3734307,3734745,3735407,3735876,3736221,3736519,3736669,3737892	
chr4	3738727	3743948	3740752	3743318	+	Cre04.g229374.t1.1	Cre04.g229374.t1.1		3738727,3740724	3739017,3743948	
chr4	3744351	3747736	3745412	3747616	-	Cre04.g229398.t1.1	Cre04.g229398.t1.1		3747558,3746421,3746264,3744351	3747736,3747360,3746315,3745919	
chr4	3747791	3748666	3748115	3748464	-	Cre04.g229422.t1.2	Cre04.g229422.t1.2		3747791	3748666	
chr4	3748841	3752914	3750394	3752856	-	Cre04.g229450.t1.1	Cre04.g229450.t1.1		3751179,3748841	3752914,3750811	
chr4	3753967	3757428	3754857	3755177	+	CSB25	Cre04.g229472.t1.1		3753967,3754831,3755054	3754447,3754941,3757428	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr4	3757647	3764441	3758028	3762985	+	Cre04.g229494.t1.1	Cre04.g229494.t1.1		3757647,3758266,3760150,3760722,3761249,3761985,3762685	3758075,3759760,3760363,3760794,3761358,3762163,3764441	May contain additional coding sequence in intronic N-island PMID: 27175017
chr4	3765254	3767946	3765853	3766190	-	Cre04.g229518.t1.2	Cre04.g229518.t1.2		3767712,3765254	3767946,3766205	
chr4	3771057	3772076	3771240	3771955	-	Cre04.g229536.t1.2	Cre04.g229536.t1.2		3771938,3771807,3771672,3771483,3771057	3772076,3771870,3771744,3771534,3771331	
chr4	3773916	3799396	3775446	3799028	-	SRR15	Cre04.g229550.t1.1		3798958,3798567,3798112,3797528,3797062,3796821,3796356,3795724,3795365,3794633,3794186,3793275,3792350,3791924,3791619,3790730,3790508,3790336,3789636,3789183,3788495,3788188,3787328,3786166,3783965,3783683,3782899,3782248,3781745,3781402,3780670,3780157,3779927,3779585,3779212,3777363,3776852,3776337,3775918,3773916	3799396,3798662,3798270,3797770,3797303,3796861,3796639,3795978,3795486,3795011,3794353,3793944,3792995,3792065,3791714,3791269,3790551,3790366,3789866,3789362,3788854,3788272,3787688,3786356,3785966,3783763,3783475,3782612,3781945,3781498,3781234,3780457,3779947,3779659,3779360,3778962,3777054,3776436,3776097,3775707	Contains C-terminal Transient receptor potential (TRP) ion channel domain; null-allele mutant was isolated (PMID 29743196)
chr4	3799606	3807166	3800263	3807050	-	ADH10	Cre04.g229650.t1.1		3806618,3806312,3805534,3805042,3804823,3804299,3803580,3803009,3802700,3801989,3801772,3800612,3800482,3799606	3807166,3806407,3805602,3805263,3804900,3804406,3803702,3803320,3802795,3802074,3801906,3800780,3800530,3800268	Alcohol dehydrogenase.  Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145].
chr4	3801370	3807166	3801850	3807050	-	ADH10	Cre04.g229650.t4.1		3806618,3806312,3805534,3805042,3804823,3804299,3803580,3803009,3802700,3801989,3801370	3807166,3806407,3805602,3805263,3804900,3804406,3803702,3803320,3802795,3802074,3801866	Alcohol dehydrogenase.  Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145].
chr4	3801501	3807166	3801850	3807050	-	ADH10	Cre04.g229650.t5.1		3806618,3806312,3805534,3805042,3804823,3804299,3803580,3803009,3802700,3801989,3801501	3807166,3806407,3805602,3805263,3804900,3804406,3803702,3803320,3802795,3802074,3801866	Alcohol dehydrogenase.  Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145].
chr4	3801741	3807476	3801984	3807421	-	ADH10	Cre04.g229650.t6.1		3807404,3806618,3806312,3805534,3805042,3804823,3804299,3803580,3803009,3802700,3801741	3807476,3806870,3806407,3805602,3805263,3804900,3804406,3803702,3803320,3802795,3802074	Alcohol dehydrogenase.  Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145].
chr4	3799606	3801686	3800263	3800888	-	ADH10	Cre04.g229650.t2.1		3800612,3800482,3799606	3801686,3800530,3800268	Alcohol dehydrogenase.  Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145].
chr4	3799606	3801316	3800263	3800888	-	ADH10	Cre04.g229650.t3.1		3800612,3800482,3799606	3801316,3800530,3800268	Alcohol dehydrogenase.  Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 28 [PMID: 18322145].
chr4	3807638	3814436	3807836	3813657	+	UGP1	Cre04.g229700.t1.2		3807638,3807933,3808290,3808950,3809446,3809808,3810254,3810796,3811121,3811559,3811813,3812363,3812852,3813268,3813538	3807842,3808043,3808370,3809078,3809562,3809902,3810334,3810892,3811257,3811623,3811938,3812487,3812911,3813343,3814436	UDPGP, Glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase; plays a central role as a glucosyl donor in metabolic pathways; a cytosolic enzyme
chr4	3814497	3818638	3814590	3816915	+	Cre04.g229750.t1.2	Cre04.g229750.t1.2		3814497,3816417	3816132,3818638	
chr4	3818727	3821328	3818847	3820332	+	Cre04.g229776.t1.1	Cre04.g229776.t1.1		3818727,3819093,3819513,3819984,3820271	3818977,3819177,3819653,3820088,3821328	
chr4	3821407	3824665	3822146	3823937	+	Cre04.g229800.t1.2	Cre04.g229800.t1.2		3821407,3822091,3823790	3821644,3822179,3824665	
chr4	3834621	3838916	3836110	3838639	-	Cre04.g229850.t1.2	Cre04.g229850.t1.2		3838532,3838398,3838087,3837596,3837055,3836765,3834621	3838916,3838450,3838178,3837682,3837141,3836889,3836270	
chr4	3839487	3849828	3839662	3847784	+	Cre04.g229948.t1.1	Cre04.g229948.t1.1		3839487,3839862,3840261,3840739,3841098,3841775,3842896,3843285,3843626,3844550,3845025,3845461,3845824,3846492,3847196,3847652	3839713,3840026,3840367,3840803,3841362,3842464,3842965,3843347,3843733,3844687,3845140,3845528,3845913,3846648,3847307,3849828	
chr4	3849851	3852966	3850223	3852857	-	Cre04.g230046.t1.1	Cre04.g230046.t1.1		3852725,3852373,3851234,3849851	3852966,3852534,3851447,3850822	
chr4	3854097	3860773	3854446	3859758	+	Cre04.g230144.t1.1	Cre04.g230144.t1.1		3854097,3854585,3854739,3854934,3855087,3855337,3855959,3856261,3856650,3857035,3857526,3858142,3858662,3859115	3854499,3854672,3854804,3854969,3855130,3855549,3856031,3856347,3856811,3857161,3857656,3858324,3858837,3860773	
chr4	3860781	3863576	3861154	3863516	-	MOT40	Cre04.g230242.t1.1		3863436,3863231,3862822,3862545,3862255,3861945,3861692,3860781	3863576,3863288,3862965,3862662,3862362,3861991,3861775,3861265	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr4	3863707	3872618	3863816	3871797	+	FAP206	Cre04.g230340.t1.1		3863707,3864009,3864724,3865264,3865695,3866661,3867028,3867555,3867873,3868206,3868574,3869318,3870581,3871175,3871638	3863882,3864197,3864751,3865337,3865866,3866766,3867250,3867650,3867937,3868363,3868947,3869485,3870690,3871262,3872618	altered pI in DRC mutant axonemes (PubMed ID:21700706 Lin et al. Nicastro 2011); not conserved; MT-binding protein, docking adapter for RS2 and dynein c (PubMed ID:25540426 Vasudevan et al. Gaertig 2015); may contain additional coding sequence in intronic N-island PMID: 27175017
chr4	3872891	3884406	3874698	3884177	-	Cre04.g230438.t1.1	Cre04.g230438.t1.1		3884036,3883702,3883109,3882181,3881757,3881311,3880958,3880257,3879493,3878549,3877312,3876952,3876522,3875897,3875191,3872891	3884406,3883799,3883217,3882249,3881819,3881448,3881165,3880745,3879971,3879089,3878153,3877020,3876574,3875909,3875280,3874845	
chr4	3884652	3897770	3886140	3897756	-	Cre04.g230536.t1.1	Cre04.g230536.t1.1		3897743,3897424,3897162,3896827,3896481,3895952,3895721,3895444,3895006,3894677,3894383,3889437,3888422,3887770,3887226,3884652	3897770,3897451,3897226,3896919,3896552,3896001,3895777,3895487,3895121,3894777,3894469,3889560,3889255,3888119,3887409,3886790	May contain additional coding sequence PMID: 27175017
chr4	3898670	3904805	3898706	3904691	-	Cre04.g230634.t1.1	Cre04.g230634.t1.1		3904532,3904063,3903774,3903258,3902842,3902592,3901863,3901386,3901061,3900821,3900276,3899908,3899456,3899105,3898848,3898670	3904805,3904219,3903852,3903287,3902904,3902611,3901894,3901481,3901105,3900850,3900303,3899958,3899548,3899163,3898892,3898787	
chr4	3905620	3911601	3906010	3911370	-	CSR2	Cre04.g230732.t1.1		3911353,3910911,3910489,3909869,3909461,3909155,3908851,3908425,3907925,3907676,3907365,3906999,3906476,3905620	3911601,3911043,3910599,3909943,3909541,3909283,3908906,3908497,3907980,3907742,3907412,3907121,3906619,3906142	
chr4	3911696	3918122	3911951	3917477	+	Cre04.g230830.t1.1	Cre04.g230830.t1.1		3911696,3912270,3913209,3913505,3913875,3914791,3915113,3915634,3916052,3917336	3911979,3912440,3913261,3913573,3914381,3914859,3915298,3915738,3916135,3918122	
chr4	3921080	3928425	3923143	3928338	-	Cre04.g230928.t1.1	Cre04.g230928.t1.1		3928239,3928020,3927516,3926865,3926206,3925615,3925086,3924390,3923731,3921080	3928425,3928148,3927673,3927091,3926296,3925830,3925161,3924485,3924050,3923414	
chr4	3928526	3934527	3928706	3933695	+	SRP43	Cre04.g231026.t1.1		3928526,3929257,3930135,3930836,3931228,3931778,3932165,3932439,3932959,3933395	3928973,3929276,3930207,3930915,3931319,3931887,3932265,3932640,3933006,3934527	
chr4	3934571	3936995	3935555	3936645	-	Cre04.g231124.t1.1	Cre04.g231124.t1.1		3936514,3936268,3934571	3936995,3936412,3935813	
chr4	3939164	3952875	3939835	3952685	-	CPN60A	Cre04.g231222.t1.1		3952661,3952534,3952322,3952031,3951448,3950449,3950191,3949786,3949424,3948986,3948513,3948086,3945980,3945394,3944872,3944543,3944285,3943997,3943402,3943073,3942518,3942230,3941912,3941683,3941322,3941040,3940634,3940223,3939164	3952875,3952596,3952436,3952155,3951534,3950514,3950244,3949849,3949581,3949092,3948617,3948136,3946198,3945634,3945069,3944608,3944338,3944065,3943470,3943177,3942556,3942382,3942085,3941778,3941446,3941114,3940724,3940351,3939919	GroEL/HSP60-homolog, targeted to the chloroplast; called Cpn60-alpha in higher plants; shares only ~50% similarity with chloroplast-targeted CPN60Bs; higher plant Cpn60-alpha with Cpn60-betas form stacks of two hetero-oligomeric heptameric rings; Cpn60s r
chr4	3939164	3952875	3939835	3952685	-	CPN60A	Cre04.g231222.t2.1		3952661,3952534,3952322,3952031,3951448,3950449,3950191,3949786,3949424,3948986,3948513,3945980,3945394,3944872,3944543,3944285,3943997,3943402,3943073,3942518,3942230,3941912,3941683,3941322,3941040,3940634,3940223,3939164	3952875,3952596,3952436,3952155,3951534,3950514,3950244,3949849,3949581,3949092,3948617,3946057,3945634,3945069,3944608,3944338,3944065,3943470,3943177,3942556,3942382,3942085,3941778,3941446,3941114,3940724,3940351,3939919	GroEL/HSP60-homolog, targeted to the chloroplast; called Cpn60-alpha in higher plants; shares only ~50% similarity with chloroplast-targeted CPN60Bs; higher plant Cpn60-alpha with Cpn60-betas form stacks of two hetero-oligomeric heptameric rings; Cpn60s r
chr4	3953316	3954667	3953582	3954317	+	Cre04.g231320.t1.1	Cre04.g231320.t1.1		3953316,3953817,3954101	3953588,3954032,3954667	
chr4	3955996	3960607	3956236	3959535	+	Cre04.g231418.t1.1	Cre04.g231418.t1.1		3955996,3956845,3957220,3957621,3957944,3958226,3958911	3956615,3957113,3957387,3957749,3958066,3958636,3960607	
chr4	3960886	3970477	3961499	3969212	+	Cre04.g231516.t1.1	Cre04.g231516.t1.1		3960886,3962668,3963116,3964136,3964516,3965050,3965427,3965764,3966145,3966644,3967125,3967380,3968026,3968468,3968907	3962083,3962749,3963208,3964255,3964638,3965146,3965518,3965808,3966297,3966748,3967175,3967547,3968148,3968621,3970477	
chr4	3960886	3970477	3961499	3969212	+	Cre04.g231516.t2.1	Cre04.g231516.t2.1		3960886,3962668,3963119,3964136,3964516,3965050,3965427,3965764,3966145,3966644,3967125,3967380,3968026,3968468,3968907	3962083,3962749,3963208,3964255,3964638,3965146,3965518,3965808,3966297,3966748,3967175,3967547,3968148,3968621,3970477	
chr4	3971446	3977747	3971549	3976046	+	Cre04.g231614.t1.1	Cre04.g231614.t1.1		3971446,3972107,3972500,3972907,3973197,3973900,3974439,3974842,3975358	3972002,3972213,3972613,3972975,3973265,3973968,3974507,3974910,3977747	
chr4	3977750	3980305	3978308	3980270	-	Cre04.g231712.t1.1	Cre04.g231712.t1.1		3980117,3979577,3979355,3978866,3977750	3980305,3979639,3979410,3979025,3978443	
chr4	3982070	3986695	3982438	3985990	-	Cre04.g231810.t1.1	Cre04.g231810.t1.1		3986407,3985967,3985423,3985162,3984592,3984111,3983829,3983498,3982975,3982070	3986695,3986052,3985475,3985232,3984677,3984163,3983919,3983576,3983203,3982506	
chr4	3987296	3992877	3987710	3992623	+	Cre04.g231908.t1.1	Cre04.g231908.t1.1		3987296,3991358,3991928,3992311	3991261,3991528,3991997,3992877	
chr4	3992926	3996187	3993056	3995517	+	Cre04.g232006.t1.1	Cre04.g232006.t1.1		3992926,3993560,3994123,3994833	3993159,3993869,3994282,3996187	
chr4	3996706	3999362	3997452	3999092	+	LHCBM3	Cre04.g232104.t1.1		3996706,3997611,3997951,3998252,3998786	3997491,3997652,3998017,3998571,3999362	
chr4	4000220	4018335	4001197	4018013	-	Cre04.g232202.t1.1	Cre04.g232202.t1.1		4016723,4016315,4016102,4015765,4015267,4014916,4014599,4014287,4013911,4011841,4011463,4011013,4010591,4009970,4009104,4008733,4008473,4007942,4007737,4007380,4006751,4005023,4004653,4002473,4002100,4001679,4000220	4018335,4016358,4016150,4015819,4015316,4015101,4014691,4014358,4014077,4012265,4011503,4011152,4010649,4010079,4009167,4008890,4008511,4008067,4007781,4007451,4006933,4006546,4004817,4004454,4002244,4001930,4001398	
chr4	4018516	4021587	4019092	4020619	+	Cre04.g232303.t1.1	Cre04.g232303.t1.1		4018516,4018709,4018894,4019075,4019398,4019663,4020354	4018547,4018757,4018963,4019138,4019559,4019861,4021587	
chr4	4021927	4034047	4022006	4033442	+	Cre04.g232402.t1.1	Cre04.g232402.t1.1		4021927,4022569,4023321,4023854,4024253,4024805,4025161,4025454,4025911,4026236,4026934,4027312,4027679,4028093,4028620,4029021,4030709,4030964,4031406,4031907,4032260,4032607,4033118	4022216,4022646,4023400,4023959,4024405,4024900,4025201,4025567,4026052,4026500,4027037,4027398,4027870,4028303,4028752,4029168,4030714,4031080,4031504,4031993,4032365,4032761,4034047	May contain additional coding sequence in intronic N-island PMID: 27175017
chr4	4035594	4043605	4036863	4043551	-	Cre04.g232502.t1.1	Cre04.g232502.t1.1		4043421,4043023,4040522,4039675,4035594	4043605,4043139,4042788,4040352,4039494	
chr4	4043706	4048737	4043922	4048388	+	GRX4	Cre04.g232602.t1.1		4043706,4044200,4044613,4044920,4045412,4045774,4046335,4046648,4047157,4047506,4047886,4048358	4043985,4044301,4044687,4045129,4045495,4045860,4046470,4046772,4047231,4047601,4047969,4048737	Glutaredoxin 4, CGFS type, probably cytosolic, contains 2 glutaredoxin modules. PMID: 16328797
chr4	4048786	4051577	4048816	4050909	+	Cre04.g232702.t1.1	Cre04.g232702.t1.1		4048786,4050483	4050286,4051577	
chr4	4052530	4057281	4054489	4057018	-	Cre04.g232802.t1.1	Cre04.g232802.t1.1		4057160,4056886,4056544,4055787,4055369,4055065,4052530	4057281,4057049,4056764,4056348,4055428,4055154,4054675	
chr4	4057840	4060965	4059406	4060880	-	Cre04.g232902.t1.1	Cre04.g232902.t1.1		4060843,4060451,4059823,4057840	4060965,4060572,4059936,4059502	
chr4	4061014	4064215	4061267	4064099	-	Cre04.g233003.t1.1	Cre04.g233003.t1.1		4063503,4063163,4062844,4062601,4062274,4061714,4061014	4064215,4063221,4062954,4062696,4062411,4061936,4061454	
chr4	4064671	4069865	4065058	4069742	-	Cre04.g233102.t1.1	Cre04.g233102.t1.1		4069685,4069535,4069332,4068903,4068570,4068018,4067737,4067293,4066921,4066676,4065339,4064671	4069865,4069594,4069461,4069120,4068766,4068378,4067850,4067605,4067161,4066772,4066477,4065149	
chr4	4069966	4077457	4070159	4077321	+	Cre04.g233202.t1.1	Cre04.g233202.t1.1		4069966,4070815,4071091,4071375,4071665,4071883,4072084,4072324,4072742,4073146,4073306,4073712,4073915,4076886,4077159	4070369,4070829,4071140,4071489,4071702,4071989,4072165,4072525,4072984,4073182,4073481,4073770,4074008,4077047,4077457	
chr4	4077470	4083415	4078535	4083032	-	Cre04.g233302.t1.1	Cre04.g233302.t1.1		4082882,4082690,4082436,4082160,4081822,4081580,4081227,4080890,4080467,4080229,4079975,4079237,4078918,4077470	4083415,4082801,4082535,4082250,4082013,4081669,4081320,4080984,4080516,4080326,4080072,4079794,4079032,4078732	
chr5	708635	714270	708896	713086	+	Cre05.g230600.t1.1	Cre05.g230600.t1.1		708635,709121,709648,710197,710564,710903,711442,711884,712515,712935	708975,709307,709879,710262,710622,711052,711568,712110,712634,714270	null-allele passenger mutation was isolated (PMID 29743196)
chr5	705613	708538	707243	708460	-	Cre05.g230650.t1.1	Cre05.g230650.t1.1		708349,708114,707734,705613	708538,708185,707763,707366	
chr5	701673	705098	702335	704865	-	Cre05.g230700.t1.2	Cre05.g230700.t1.2		703050,701673	705098,702437	
chr5	674629	683874	674743	682952	+	Cre05.g230800.t1.1	Cre05.g230800.t1.1		674629,675058,675253,676253,676915,677519,677981,679913,680325,680777,681484,682090,682862	674862,675136,675926,676652,677238,677773,679477,680039,680460,680960,681771,682359,683874	
chr5	692759	695450	692783	694891	+	Cre05.g230803.t1.1	Cre05.g230803.t1.1		692759,693111,693388,693727,694456,694834	692864,693153,693491,693809,694558,695450	
chr5	699799	701623	699830	701001	+	SNF2	Cre05.g230804.t1.1		699799,700278	699848,701623	
chr5	668803	674518	670091	674406	-	Cre05.g230850.t1.1	Cre05.g230850.t1.1		674255,673997,673678,673348,672980,672599,672073,671473,668803	674518,674064,673719,673430,673084,672666,672264,671618,671147	
chr5	664423	668668	665530	668438	-	Cre05.g230900.t1.1	Cre05.g230900.t1.1		668210,667861,667383,666789,666274,664423	668668,667962,667532,666864,666510,665754	
chr5	659815	664168	662271	663930	-	Cre05.g230950.t1.1	Cre05.g230950.t1.1		663743,663326,662691,659815	664168,663498,663137,662451	
chr5	657642	659768	658571	659249	-	Cre05.g230971.t1.2	Cre05.g230971.t1.2		659243,659139,658803,657642	659768,659183,658869,658657	
chr5	650939	653956	651140	652961	+	Cre05.g231000.t1.2	Cre05.g231000.t1.2		650939,651898,652508	651309,652355,653956	
chr5	653958	657268	654859	657070	-	Cre05.g231002.t1.1	Cre05.g231002.t1.1		656633,655064,653958	657268,655550,654859	
chr5	643929	650890	644124	650419	+	Cre05.g231050.t1.1	Cre05.g231050.t1.1		643929,644564,645223,646038,646454,647186,648036,650110,650228	644240,644852,645362,646114,646599,647370,649291,650181,650890	
chr5	637481	642418	637746	642353	-	Cre05.g231100.t1.1	Cre05.g231100.t1.1		642344,642115,641895,641592,641325,640764,640319,640026,639725,639275,639031,638828,638584,638210,637481	642418,642213,641996,641690,641423,640862,640414,640124,639823,639370,639132,638929,638736,638338,638043	
chr5	613169	618130	613278	618094	+	Cre05.g232000.t1.1	Cre05.g232000.t1.1		613169,613518,613993,614269,614543,615093,615367,615710,616097,616586,616918,617478,617966	613295,613792,614069,614319,614671,615143,615495,615751,616258,616647,617002,617613,618130	
chr5	613169	618130	613278	618094	+	Cre05.g232000.t2.1	Cre05.g232000.t2.1		613169,613518,613993,614269,614543,615710,616097,616586,616918,617478,617966	613295,613792,614069,614319,614671,615751,616258,616647,617002,617613,618130	
chr5	618133	629198	619597	628981	-	Cre05.g232002.t1.1	Cre05.g232002.t1.1		628767,628323,627953,627250,626703,626557,626183,625712,625217,624947,624543,624002,623140,622501,621792,621330,620786,618133	629198,628369,628045,627388,626847,626613,626229,625794,625353,625019,624611,624145,623190,622632,621973,621467,620990,619723	catalyzes the oxidation of fatty acyl-CoAs into trans-2-enoyl-CoA, producing H2O2; mutant is strongly impaired in oil remobilization; involved in peroxisomal ?-oxidation of fatty acids
chr5	618133	629198	619597	628981	-	Cre05.g232002.t2.1	Cre05.g232002.t2.1		628767,628323,627953,627250,626703,626183,625712,625217,624947,624543,624002,623140,622501,621792,621330,620786,618133	629198,628369,628045,627388,626847,626229,625794,625353,625019,624611,624145,623190,622632,621973,621467,620990,619723	catalyzes the oxidation of fatty acyl-CoAs into trans-2-enoyl-CoA, producing H2O2; mutant is strongly impaired in oil remobilization; involved in peroxisomal ?-oxidation of fatty acids
chr5	629799	631020	630076	630900	+	Cre05.g232003.t1.1	Cre05.g232003.t1.1		629799,630277,630798	630207,630337,631020	
chr5	631423	637038	631651	636734	-	Cre05.g232004.t1.1	Cre05.g232004.t1.1		636638,636443,635644,635034,634342,633825,633323,632699,632416,632145,631423	637038,636568,636108,635150,634426,633907,633588,632804,632465,632202,631756	
chr5	602953	613048	603840	612884	-	Cre05.g232050.t1.1	Cre05.g232050.t1.1		612749,608797,608292,607497,607187,605015,604719,604295,602953	613048,612471,608597,608075,607279,606856,604773,604385,604147	
chr5	598848	601594	599839	601459	-	Cre05.g232100.t1.2	Cre05.g232100.t1.2		601419,601286,601108,600870,600420,598848	601594,601324,601184,600988,600513,599938	null-allele passenger mutation was isolated (PMID 29743196)
chr5	592684	598768	593264	598571	-	GDH2	Cre05.g232150.t1.2		598421,598086,597752,597458,597063,596827,596492,596188,595818,595419,594839,594406,593967,593656,592684	598768,598172,597799,597528,597195,596884,596568,596268,595862,595520,594925,594495,594048,593749,593406	Glutamate dehydrogenase (EC 1.4.1.2); organelle targeting somewhat ambiguous but weakly predicted by Target-P to be mitochondrial
chr5	585309	592338	586466	592300	-	NDA3	Cre05.g232200.t1.2		592218,591874,591392,591105,590750,590410,590023,589721,589350,588928,588479,588146,587540,587282,586909,585309	592338,591968,591626,591193,590933,590562,590249,589843,589472,589056,588595,588238,587797,587339,587015,586547	NADH:quinone reductase (non-electrogenic)
chr5	561913	574518	562172	574421	-	Cre05.g232300.t1.1	Cre05.g232300.t1.1		574364,573958,573076,572576,571985,571166,570188,569370,568922,568356,567655,567027,566143,565245,564212,563050,562594,561913	574518,574110,573660,572662,572138,571566,570660,569877,569014,568619,567739,567220,566679,565831,564317,563727,562854,562298	
chr5	574974	577458	575983	577272	-	Cre05.g232304.t1.1	Cre05.g232304.t1.1		577259,576556,574974	577458,576793,576173	
chr5	580929	584700	581712	584190	+	Cre05.g232305.t1.1	Cre05.g232305.t1.1		580929,583013,583496,583727,583979	581799,583141,583535,583841,584700	
chr5	549799	551935	550122	551221	+	Cre05.g232350.t1.1	Cre05.g232350.t1.1		549799,550061,550433,550796,551065	549915,550299,550615,550867,551935	
chr5	548829	549750	549047	549660	+	Cre05.g232400.t1.2	Cre05.g232400.t1.2		548829	549750	
chr5	481960	486012	481995	485320	-	Cre05.g232450.t1.1	Cre05.g232450.t1.1		485521,484754,484036,483340,482093,481960	486012,485362,484231,483528,482309,482012	
chr5	486924	489392	487772	489363	-	Cre05.g232454.t1.1	Cre05.g232454.t1.1		489245,488563,486924	489392,489143,488216	
chr5	491164	491922	491667	491863	-	Cre05.g232455.t1.1	Cre05.g232455.t1.1		491164	491922	
chr5	500253	501888	500299	501270	+	Cre05.g232456.t1.1	Cre05.g232456.t1.1		500253,500721	500473,501888	
chr5	450923	467604	451124	467436	+	FXL8	Cre05.g232500.t1.1		450923,451804,452043,452374,452695,453207,453655,453862,454337,455291,455640,456299,456926,457374,458311,458731,459273,459691,460018,460748,461029,461456,461821,462178,462820,463571,463926,464237,464726,465153,465691,466051,466805,467377	451225,451838,452091,452458,452796,453305,453665,453922,454424,455373,455780,456490,457085,457468,458438,458859,459414,459855,460260,460912,461130,461572,461930,462316,463206,463678,464045,464486,464987,465281,465908,466670,467297,467604	Cd13, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and
chr5	450923	467604	451124	467436	+	FXL8	Cre05.g232500.t2.1		450923,451804,452043,452374,452695,453207,453655,453862,454337,455291,455640,456299,456926,457374,458311,458731,459273,459691,460018,460748,461029,461456,461821,462178,462820,463571,463926,464237,464726,465153,465691,466051,466805,467377	451225,451838,452091,452458,452796,453305,453665,453922,454424,455373,455780,456469,457085,457468,458438,458859,459414,459855,460260,460912,461130,461572,461930,462316,463206,463678,464045,464486,464987,465281,465908,466670,467297,467604	Cd13, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and
chr5	445477	450572	446044	450296	-	PGM4	Cre05.g232550.t1.2		450041,449594,449173,448327,447710,447193,446645,445477	450572,449671,449289,448427,447937,447292,446776,446452	phosphoglycerate/bisphosphoglycerate mutase family protein
chr5	437193	445137	437813	444041	+	Cre05.g232600.t1.1	Cre05.g232600.t1.1		437193,437638,438086,438601,439150,439597,440071,440708,441370,441845,442433,442833,443213,443476,443998	437398,437853,438165,438664,439277,439695,440424,440848,441521,441930,442602,442953,443252,443622,445137	null-allele passenger mutation was isolated (PMID 29743196)
chr5	417692	422862	418790	422632	-	CNK4	Cre05.g232750.t1.2		422488,422329,422153,421965,421707,421447,421139,420817,420008,419284,417692	422862,422418,422263,422084,421877,421542,421288,420841,420262,419548,418941	NimA-related protein kinase homolog 4 [gi:34334397, PMID: 15068267]
chr5	423288	431692	424173	431335	-	Cre05.g232751.t1.1	Cre05.g232751.t1.1		430959,430688,430181,429794,429154,428362,427129,426571,426252,425984,425613,425254,424595,423288	431692,430761,430267,429900,429269,428507,427443,426642,426305,426119,425663,425355,424684,424289	
chr5	431793	437104	432131	436358	+	Cre05.g232752.t1.1	Cre05.g232752.t1.1		431793,433443,433855,434156,434733,435113,435401,435899	432883,433512,433938,434194,434822,435196,435655,437104	
chr5	412807	414862	413940	414785	-	SRX1	Cre05.g232800.t1.1		414605,414250,412807	414862,414354,414036	see PMID: 15917647 for relationship to ParB
chr5	411021	412802	411175	411767	+	COX17	Cre05.g232850.t1.2		411021,411554,411761	411344,411624,412802	putative cytochrome c oxidase assembly protein/Cu2+ chaperone COX17; gi 9022432; gb AF280543
chr5	393003	410950	393214	409147	+	Cre05.g232900.t1.1	Cre05.g232900.t1.1		393003,393461,394146,395512,397300,397808,398428,398986,399700,400426,400822,401093,401491,402289,402727,405300,406354,407143,408172,408673	393298,393563,395404,396996,397435,397890,398487,399248,399805,400554,400926,401167,401937,402446,405136,406067,407066,407569,408489,410950	
chr5	384377	392882	385025	392630	-	Cre05.g232950.t1.2	Cre05.g232950.t1.2		392439,391475,390800,390127,389632,389415,388413,387933,387326,386820,386538,385924,385630,384377	392882,391541,391036,390257,389707,389460,388459,388013,387492,386925,386612,386040,385695,385133	
chr5	374447	376512	375446	376163	-	FAP162	Cre05.g233050.t1.2		376105,374447	376512,375931	Flagellar Associated Protein, found in the flagellar proteome
chr5	379643	382344	380746	382100	+	Cre05.g233051.t1.1	Cre05.g233051.t1.1		379643,379866,380289,380732,381034,381357,381761	379754,379919,380342,380752,381075,381431,382344	
chr5	379643	382344	381069	382100	+	Cre05.g233051.t2.1	Cre05.g233051.t2.1		379643,379866,380289,381034,381357,381761	379754,379919,380342,381075,381431,382344	
chr5	382483	384374	382557	383530	+	Cre05.g233052.t1.1	Cre05.g233052.t1.1		382483,383343	382835,384374	
chr5	368373	374444	368997	374061	+	KIN14B-1	Cre05.g233100.t1.2		368373,368631,368950,369164,369475,370153,370376,370849,371130,371332,371641,371904,372218,372394,372780,372998,373282,373727	368517,368652,369084,369409,369978,370266,370696,370991,371212,371483,371796,372074,372269,372647,372905,373165,373616,374444	kinesin-14 family, kinesin-14B subfamily
chr5	368613	374444	368997	374061	+	KIN14B-1	Cre05.g233100.t2.1		368613,369164,369475,370153,370376,370849,371130,371332,371641,371904,372218,372394,372780,372998,373282,373727	369084,369409,369978,370266,370696,370991,371212,371483,371796,372074,372269,372647,372905,373165,373616,374444	kinesin-14 family, kinesin-14B subfamily
chr5	322013	328418	323408	328311	-	Cre05.g233300.t1.2	Cre05.g233300.t1.2		328255,327773,327251,326760,326342,325836,325402,325078,324597,324079,322013	328418,327854,327304,326830,326468,325909,325438,325155,324686,324126,323594	
chr5	328465	349208	328883	349076	-	Cre05.g233303.t1.1	Cre05.g233303.t1.1		348974,348458,348003,346861,346354,346021,345617,345148,344915,344486,343602,343244,342874,342402,341967,341518,341038,340300,339759,339462,339142,338301,337592,337028,336470,335596,335089,334548,334084,332932,332594,332230,331785,331214,330821,330507,329932,329432,328465	349208,348601,348089,347238,346495,346118,345688,345273,344974,344606,343863,343294,342927,342526,342075,341610,341206,340383,339889,339546,339219,338642,337753,337148,336732,336164,335203,334625,334182,333178,332667,332271,331873,331366,330950,330605,329988,329560,329102	May contain additional coding sequence in intronic N-island PMID: 27175017; null-allele passenger mutation was isolated (PMID 29743196)
chr5	328465	349208	328883	349076	-	Cre05.g233303.t2.1	Cre05.g233303.t2.1		348974,348458,348003,346861,346354,346021,345617,345148,344486,343602,343244,342874,342402,341967,341518,341038,340300,339759,339462,339142,338301,337592,337028,336470,335596,335089,334548,334084,332932,332594,332230,331785,331214,330821,330507,329932,329432,328465	349208,348601,348089,347238,346495,346118,345688,345273,344606,343863,343294,342927,342526,342075,341610,341206,340383,339889,339546,339219,338642,337753,337148,336732,336164,335203,334625,334182,333178,332667,332271,331873,331366,330950,330605,329988,329560,329102	May contain additional coding sequence in intronic N-island PMID: 27175017; null-allele passenger mutation was isolated (PMID 29743196)
chr5	349649	358069	349879	357149	+	CHI3	Cre05.g233304.t1.1		349649,350451,350824,351197,352173,352672,353146,354484,354933,355490,355737,356000,356712	350011,350542,350872,351368,352391,352767,353273,354630,355321,355617,355771,356459,358069	
chr5	358399	364872	358472	364436	+	Cre05.g233305.t1.1	Cre05.g233305.t1.1		358399,359116,359535,360186,360681,361162,361521,362076,362635,363005,363431,364418	358752,359174,359680,360249,360744,361232,361613,362121,362793,363093,363514,364872	
chr5	358399	364872	358472	363530	+	Cre05.g233305.t2.1	Cre05.g233305.t2.1		358399,359116,359535,360186,360681,361162,361521,362076,362635,363005,363431	358752,359174,359680,360249,360744,361232,361613,362121,362793,363093,364872	
chr5	318913	321918	319541	321813	-	Cre05.g233350.t1.2	Cre05.g233350.t1.2		320097,318913	321918,319775	
chr5	313859	318895	313911	318095	+	Cre05.g233400.t1.1	Cre05.g233400.t1.1		313859,314710,315102,315322,315682,316187,316576,317145,317684	314098,314757,315128,315363,316018,316402,316839,317433,318895	
chr5	16810	25225	17947	24701	-	Cre05.g233402.t1.1	Cre05.g233402.t1.1		24694,23516,21698,21097,20252,16810	25225,24504,22223,21587,20345,19404	
chr5	16810	19685	17947	19584	-	Cre05.g233402.t2.1	Cre05.g233402.t2.1		19542,16810	19685,18802	
chr5	305123	313268	305723	312774	-	ELG30	Cre05.g233450.t1.2		312692,312387,311669,311129,310557,309868,309454,309058,308363,307399,306798,306266,305123	313268,312432,311758,311251,310657,310067,309493,309287,308467,307467,306899,306359,305899	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr5	144846	147087	145639	146012	+	Cre05.g233502.t1.1	Cre05.g233502.t1.1		144846,145846	145698,147087	
chr5	276769	290719	277073	288151	+	Cre05.g233550.t1.1	Cre05.g233550.t1.1		276769,277316,277789,278260,279054,279335,279636,280362,281656,283034,283366,283832,284175,284716,285255,285507,285851,286162,286502,286727,287052	277253,277434,277996,278931,279154,279461,280146,281485,282379,283146,283475,283895,284461,284920,285328,285571,285874,286228,286547,286797,290719	
chr5	291923	304318	293563	303687	-	Cre05.g233551.t1.1	Cre05.g233551.t1.1		304057,303921,303633,303398,302858,298866,298526,298017,297143,295764,291923	304318,303955,303754,303445,302995,302598,298660,298370,297689,296627,295553	null-allele passenger mutation was isolated (PMID 29743196)
chr5	262599	273663	264007	271374	+	Cre05.g233600.t1.1	Cre05.g233600.t1.1		262599,263664,263814,264346,264786,265133,265621,265809,266656,267106,267444,267753,271305	262816,263706,264096,264628,264836,265459,265671,266447,266781,267225,267542,271013,273663	Kinase homology. ts-lethal mutations block in S/M (PMID 25336509)
chr5	147276	149767	147927	148159	+	Cre05.g233602.t1.1	Cre05.g233602.t1.1		147276,147894	147774,149767	
chr5	241493	259688	242668	259505	-	FXL9	Cre05.g233650.t1.1		259416,258792,258597,257957,257775,257585,257338,257082,256899,256695,256372,255983,255802,255474,255090,254795,254502,254271,254077,253622,253366,253192,252950,252655,252380,252062,251687,251353,251064,250610,250174,249810,249122,248678,248344,247880,247702,247276,246996,246625,246304,245672,244897,244585,244168,243615,243189,241493	259688,258875,258651,258008,257854,257605,257415,257102,256960,256774,256544,256087,255869,255543,255237,254889,254629,254384,254170,253831,253467,253233,253024,252764,252518,252192,251942,251580,251238,250910,250302,250047,249592,248946,248533,248081,247747,247462,247082,246752,246425,245801,245422,244680,244290,243895,243369,242824	FixL like homolog 9 (FXL). PAS region shows high identity to Rhizobial FixL proteins.
chr5	151486	153487	152144	152376	+	Cre05.g233702.t1.1	Cre05.g233702.t1.1		151486,152111	151992,153487	
chr5	151486	154010	152144	152376	+	Cre05.g233702.t2.1	Cre05.g233702.t2.1		151486,152111	151992,154010	
chr5	233963	238938	235200	238765	-	Cre05.g233750.t1.1	Cre05.g233750.t1.1		236890,236528,236152,235866,233963	238938,236603,236209,235964,235597	
chr5	238993	240678	239786	240606	-	Cre05.g233751.t1.1	Cre05.g233751.t1.1		240405,240230,238993	240678,240314,239992	
chr5	225219	233960	225357	232788	+	TSG1	Cre05.g233800.t1.2		225219,225550,226008,226293,226599,226890,227342,228098,229193,229518,230028,230496,230913,231247,231723,232140,232427,232767	225468,225615,226070,226409,226679,226976,227401,228163,229291,229774,230205,230675,231017,231447,231882,232267,232525,233960	
chr5	153646	156206	154444	154817	+	Cre05.g233802.t1.1	Cre05.g233802.t1.1		153646,154651	154503,156206	
chr5	219993	225118	220398	225082	-	Cre05.g233850.t1.1	Cre05.g233850.t1.1		224992,224260,223682,223534,223245,221339,220668,219993	225118,224379,224074,223565,223416,223027,221159,220518	
chr5	216149	219990	216257	218808	+	APX4	Cre05.g233900.t1.2		216149,216658,216991,217214,217436,217814,218283,218666	216384,216812,217103,217274,217519,217996,218461,219990	L-ascorbate peroxidase
chr5	159416	162865	160058	160290	+	Cre05.g233902.t1.1	Cre05.g233902.t1.1		159416,160025	159905,162865	
chr5	214563	216048	215122	215954	-	CGL129	Cre05.g233950.t1.2		215852,215682,215453,215277,214563	216048,215768,215560,215348,215188	
chr5	213003	214358	213228	214212	-	CSB26	Cre05.g234000.t1.1		213856,213708,213467,213003	214358,213801,213553,213351	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr5	213003	214358	213228	214212	-	CSB26	Cre05.g234000.t2.1		213856,213708,213003	214358,213801,213351	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr5	209319	212890	209520	212051	+	Cre05.g234050.t1.2	Cre05.g234050.t1.2		209319,209872,210232,210677,211164,211535,211945	209721,209935,210431,210766,211364,211704,212890	
chr5	204046	209162	204681	208915	-	CYP745A1	Cre05.g234100.t1.2		208273,208025,207475,207072,206672,206154,205706,205183,204046	209162,208072,207732,207218,206770,206201,205777,205302,204879	Cytochrome P450, most similar to CYP97 or CYP746 sequences. It clusters with the 72 clan or the 97 clan and these two cluster with each other
chr5	198849	203660	199934	201950	+	Cre05.g234150.t1.1	Cre05.g234150.t1.1		198849,199912,200229	199624,200115,203660	
chr5	191149	198210	191238	197076	+	Cre05.g234200.t1.2	Cre05.g234200.t1.2		191149,191640,191879,192302,192581,192813,193025,193399,193826,194133,196010,196515	191406,191761,191972,192451,192625,192880,193160,193474,193935,195746,196396,198210	
chr5	188789	191018	189292	190904	-	Cre05.g234250.t1.1	Cre05.g234250.t1.1		190557,190346,190136,189987,189771,189641,188789	191018,190397,190248,190035,189860,189689,189462	5-methylcytosine G/T mismatch-specific DNA glycosylase; homolog of methyl-CpG binding domain protein MBD4.  Deamination of 5-methylated cytosine leads to G/T mismatches, which is mutagenic if not corrected and alters the methylatio
chr5	184843	188738	185339	188622	-	Cre05.g234300.t1.2	Cre05.g234300.t1.2		188553,188342,188073,187858,187576,187185,186785,186495,186208,185857,184843	188738,188464,188149,187924,187662,187310,186913,186656,186312,186042,185609	
chr5	181519	184840	181770	184608	+	Cre05.g234350.t1.1	Cre05.g234350.t1.1		181519,182085,182362,182724,184244,184476	181915,182218,182525,183915,184321,184840	
chr5	163870	176225	164509	175953	-	Cre05.g234400.t1.1	Cre05.g234400.t1.1		175938,175799,175605,175099,174712,174336,173978,173691,173391,173071,172812,172348,171905,171669,171475,171074,169665,169147,167479,166320,166139,165550,163870	176225,175851,175706,175402,174891,174587,174196,173821,173562,173191,172949,172567,172205,171740,171591,171212,170932,169472,169000,167309,166219,165982,165417	
chr5	2048666	2060509	2048910	2059518	+	Cre05.g234500.t1.1	Cre05.g234500.t1.1		2048666,2049648,2050018,2050361,2051326,2051768,2052490,2052994,2053305,2053764,2054014,2054554,2055531,2056094,2057036,2057484,2058142,2058698,2059174,2059482	2049416,2049771,2050092,2050989,2051416,2051845,2052537,2053041,2053384,2053818,2054073,2054631,2055636,2056212,2057124,2057611,2058209,2058790,2059239,2060509	May contain additional coding sequence in intronic N-island PMID: 27175017
chr5	2060640	2063875	2061424	2063386	-	FBA3	Cre05.g234550.t1.2		2062755,2062321,2061769,2060640	2063875,2062400,2062044,2061571	Fructose-1,6-bisphosphate aldolase 1 (EC:4.1.2.13); probably plastidic, but predicted mitochondrial by Target-P; 87% identical to cDNA (Q42690); glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate [PMID: 8053679; Genbank entry X69969]
chr5	2060640	2063453	2061424	2063386	-	FBA3	Cre05.g234550.t2.1		2062755,2062321,2061769,2060640	2063453,2062400,2062044,2061571	Fructose-1,6-bisphosphate aldolase 1 (EC:4.1.2.13); probably plastidic, but predicted mitochondrial by Target-P; 87% identical to cDNA (Q42690); glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate [PMID: 8053679; Genbank entry X69969]
chr5	2065143	2065855	2065493	2065761	-	Cre05.g234576.t1.1	Cre05.g234576.t1.1		2065143	2065855	
chr5	2067760	2079785	2068704	2079661	-	Cre05.g234600.t1.1	Cre05.g234600.t1.1		2079559,2076325,2074801,2074017,2073577,2072776,2072380,2070633,2070371,2069336,2067760	2079785,2079258,2074922,2074242,2073675,2072819,2072492,2071882,2070448,2070103,2068986	
chr5	2086560	2090425	2087759	2090048	-	Cre05.g234636.t1.1	Cre05.g234636.t1.1		2090019,2089421,2088738,2086560	2090425,2089541,2088827,2087969	
chr5	2092159	2095595	2092982	2095468	-	Cre05.g234637.t1.1	Cre05.g234637.t1.1		2095041,2093621,2092159	2095595,2094058,2092982	
chr5	2095720	2103465	2096949	2103356	-	Cre05.g234638.t1.1	Cre05.g234638.t1.1		2103132,2102832,2102336,2101739,2100687,2100098,2099597,2099239,2098459,2098033,2097633,2097409,2095720	2103465,2103043,2102489,2101844,2100835,2100266,2099718,2099355,2098606,2098173,2097722,2097474,2097048	
chr5	2104816	2112098	2104943	2111489	+	CCT4	Cre05.g234639.t1.1		2104816,2105053,2105239,2105830,2106373,2107199,2107954,2108606,2108967,2109293,2109964,2110409,2110988,2111360	2104975,2105158,2105352,2105973,2106440,2107319,2108022,2108728,2109122,2109421,2110100,2110502,2111146,2112098	T-complex protein 1, delta subunit (TCP-1-delta) (CCT-delta) (TCPD); subunit of cytosolic chaperonin complex
chr5	2113010	2138445	2113422	2138288	-	Cre05.g234640.t1.1	Cre05.g234640.t1.1		2138233,2138043,2137609,2136750,2136374,2135799,2135351,2134886,2134425,2133865,2133457,2132913,2132468,2132111,2131449,2131168,2130737,2130245,2129496,2128947,2127575,2127336,2127044,2126747,2126363,2125880,2125352,2124866,2124209,2123796,2122864,2122630,2122317,2121675,2120565,2120010,2119430,2119036,2118460,2117976,2117627,2117184,2116110,2115389,2114714,2114153,2113010	2138445,2138126,2137920,2137376,2136588,2136149,2135503,2135155,2134591,2134179,2133658,2133105,2132745,2132300,2131909,2131233,2130904,2130455,2129704,2129095,2127695,2127412,2127083,2126885,2126538,2126008,2125637,2125023,2124553,2123956,2123353,2122730,2122410,2121882,2121397,2120262,2119679,2119129,2118657,2118195,2117708,2117388,2116727,2115472,2114871,2114285,2113683	
chr5	2113010	2138445	2113422	2138288	-	Cre05.g234640.t2.1	Cre05.g234640.t2.1		2138233,2138043,2137609,2136750,2136374,2135799,2135351,2134886,2134425,2133865,2133448,2132913,2132468,2132111,2131449,2131168,2130737,2130245,2129496,2128947,2127575,2127336,2127044,2126747,2126363,2125880,2125352,2124866,2124209,2123796,2122864,2122630,2122317,2121729,2120565,2120010,2119430,2119036,2118460,2117976,2117627,2117184,2116110,2115389,2114714,2114153,2113010	2138445,2138126,2137920,2137376,2136588,2136149,2135503,2135155,2134591,2134179,2133658,2133105,2132745,2132300,2131909,2131233,2130904,2130455,2129704,2129095,2127695,2127412,2127083,2126885,2126538,2126008,2125637,2125023,2124553,2123956,2123353,2122730,2122410,2121882,2121397,2120262,2119679,2119129,2118657,2118195,2117708,2117388,2116727,2115472,2114871,2114285,2113683	
chr5	2113010	2138445	2113422	2138288	-	Cre05.g234640.t3.1	Cre05.g234640.t3.1		2138233,2138043,2137609,2136750,2136374,2135799,2135351,2134886,2134425,2133865,2133457,2132913,2132468,2132111,2131449,2131168,2130737,2130245,2129496,2128947,2127575,2127336,2127044,2126747,2126363,2125880,2125352,2124866,2124209,2123796,2122864,2122630,2122317,2121729,2120565,2120010,2119430,2119036,2118460,2117976,2117627,2117184,2116110,2115389,2114714,2114153,2113010	2138445,2138126,2137920,2137376,2136588,2136149,2135503,2135155,2134591,2134179,2133658,2133105,2132745,2132300,2131909,2131233,2130904,2130455,2129704,2129095,2127695,2127412,2127083,2126885,2126538,2126008,2125637,2125023,2124553,2123956,2123353,2122730,2122410,2121882,2121397,2120262,2119679,2119129,2118657,2118195,2117708,2117388,2116727,2115472,2114871,2114285,2113683	
chr5	2138936	2140451	2139069	2139911	+	Cre05.g234641.t1.1	Cre05.g234641.t1.1		2138936,2139243	2139154,2140451	
chr5	2140540	2143995	2141942	2143898	-	Cre05.g234642.t1.1	Cre05.g234642.t1.1		2143801,2140540	2143995,2143738	
chr5	2144050	2145105	2144394	2144629	-	Cre05.g234643.t1.1	Cre05.g234643.t1.1		2145024,2144050	2145105,2144876	
chr5	2145200	2147925	2145473	2147808	-	Cre05.g234644.t1.1	Cre05.g234644.t1.1		2145948,2145200	2147925,2145569	
chr5	2148186	2174605	2148610	2174428	-	Cre05.g234645.t1.1	Cre05.g234645.t1.1		2174355,2174053,2173541,2173043,2172636,2172126,2171608,2170893,2170431,2169692,2169090,2168679,2167856,2166947,2162786,2162287,2161988,2160653,2157874,2157567,2157208,2156619,2155997,2155584,2155104,2154622,2154351,2153878,2153593,2153264,2152350,2151897,2151329,2150863,2150044,2149051,2148186	2174605,2174175,2173633,2173116,2172748,2172178,2171732,2171335,2170539,2169766,2169196,2168748,2168353,2167096,2162899,2162402,2162070,2161788,2160401,2157652,2157383,2156858,2156051,2155789,2155298,2154735,2154395,2154045,2153637,2153401,2152505,2152096,2151493,2151024,2150568,2149874,2148654	
chr5	2174756	2175737	2175389	2175585	+	Cre05.g234646.t1.1	Cre05.g234646.t1.1		2174756	2175737	
chr5	2175839	2179495	2176187	2179383	-	Cre05.g234647.t1.1	Cre05.g234647.t1.1		2179370,2179070,2178841,2178424,2178077,2177730,2177188,2175839	2179495,2179197,2178954,2178517,2178149,2177812,2177285,2176292	
chr5	2179543	2181045	2180122	2180816	-	Cre05.g234648.t1.1	Cre05.g234648.t1.1		2180764,2180506,2179543	2181045,2180696,2180212	
chr5	2181146	2185927	2181248	2184797	+	Cre05.g234649.t1.1	Cre05.g234649.t1.1		2181146,2181639,2182018,2182355	2181486,2181671,2182079,2185927	
chr5	2294661	2295999	2295022	2295412	-	Cre05.g234650.t1.2	Cre05.g234650.t1.2		2295551,2295267,2294661	2295999,2295476,2295096	
chr5	2185929	2195265	2186528	2195129	-	Cre05.g234651.t1.1	Cre05.g234651.t1.1		2195002,2194753,2194440,2193967,2193683,2193282,2192813,2192341,2191933,2191489,2191132,2190601,2188866,2188354,2187343,2186862,2185929	2195265,2194903,2194603,2194024,2193776,2193338,2192879,2192406,2192021,2191602,2191284,2190820,2188981,2188426,2187541,2186976,2186612	
chr5	2185929	2195165	2186528	2195029	-	Cre05.g234651.t2.1	Cre05.g234651.t2.1		2194998,2194753,2194440,2193967,2193683,2193282,2192813,2192341,2191933,2191489,2191132,2190601,2188866,2188354,2187343,2186862,2185929	2195165,2194903,2194603,2194024,2193776,2193338,2192879,2192406,2192021,2191602,2191284,2190820,2188981,2188426,2187541,2186976,2186612	
chr5	2195460	2202072	2195669	2201022	+	Cre05.g234652.t1.1	Cre05.g234652.t1.1		2195460,2195979,2196334,2196818,2197118,2197535,2198011,2198472,2199155,2199782,2200158,2200479,2200917	2195730,2196064,2196384,2196915,2197184,2197642,2198094,2198591,2199392,2199903,2200219,2200575,2202072	
chr5	2202425	2206336	2203025	2206199	-	Cre05.g234653.t1.1	Cre05.g234653.t1.1		2206133,2205667,2204264,2202425	2206336,2205904,2205021,2203403	
chr5	2206384	2212259	2207490	2212132	-	Cre05.g234654.t1.1	Cre05.g234654.t1.1		2211853,2211346,2210931,2210498,2208858,2208126,2206384	2212259,2211478,2211060,2210655,2210053,2208536,2207802	
chr5	2212380	2216514	2212494	2215674	+	Cre05.g234655.t1.1	Cre05.g234655.t1.1		2212380,2212639,2212771,2213094,2213346,2213570,2214251,2214564,2215281,2215596	2212569,2212699,2212886,2213150,2213417,2213650,2214366,2214738,2215397,2216514	
chr5	2216580	2226329	2216730	2224067	+	Cre05.g234656.t1.1	Cre05.g234656.t1.1		2216580,2217327,2217566,2218206,2218645,2219128,2219376,2219735,2220059,2220297,2220620,2220963,2221182,2221366,2221534,2221791,2222099,2222391,2222875	2217077,2217396,2217787,2218482,2218931,2219175,2219487,2219841,2220085,2220367,2220757,2221024,2221228,2221414,2221589,2221890,2222137,2222574,2226329	
chr5	2227190	2230076	2227696	2229718	+	Cre05.g234657.t1.1	Cre05.g234657.t1.1		2227190,2228878	2228566,2230076	
chr5	2230107	2232389	2230585	2232062	-	Cre05.g234658.t1.1	Cre05.g234658.t1.1		2232045,2231757,2230107	2232389,2231848,2231574	
chr5	2232512	2234481	2232663	2233480	+	MRPL30	Cre05.g234659.t1.1		2232512,2233009	2232837,2234481	
chr5	2234491	2239189	2236031	2238395	-	Cre05.g234660.t1.1	Cre05.g234660.t1.1		2238219,2237589,2237236,2234491	2239189,2237698,2237370,2237014	
chr5	2239462	2243977	2239675	2243283	+	Cre05.g234661.t1.1	Cre05.g234661.t1.1		2239462,2240017,2240398,2240652,2241009,2241513,2241796,2242051,2242766,2243038	2239705,2240207,2240473,2240848,2241296,2241643,2241910,2242598,2242867,2243977	P-loop containing nucleoside triphosphate hydrolases superfamily protein
chr5	2244000	2247019	2244454	2247015	-	Cre05.g234662.t1.1	Cre05.g234662.t1.1		2246548,2246244,2245834,2245619,2245375,2244979,2244000	2247019,2246319,2245928,2245698,2245460,2245109,2244752	
chr5	2247071	2254679	2247540	2254443	-	Cre05.g234663.t1.1	Cre05.g234663.t1.1		2254402,2254100,2253828,2253521,2253226,2252877,2251440,2251223,2250716,2249522,2248086,2247071	2254679,2254188,2253949,2253652,2253299,2252997,2251517,2251339,2250877,2250592,2249273,2247894	
chr5	2255724	2259590	2256214	2259302	-	Cre05.g234664.t1.1	Cre05.g234664.t1.1		2259475,2259202,2258848,2258431,2258091,2257638,2257071,2256675,2255724	2259590,2259364,2258945,2258583,2258183,2257733,2257215,2256878,2256495	
chr5	2259710	2271371	2259937	2270772	+	AP4B4	Cre05.g234665.t1.1		2259710,2260693,2261193,2261707,2262432,2264662,2265238,2265672,2266031,2266394,2266863,2267489,2268198,2268641,2268972,2270081,2270582	2260333,2260804,2261275,2261769,2262553,2264731,2265336,2265746,2266150,2266463,2267047,2267688,2268342,2268722,2269843,2270268,2271371	Expressed protein. Beta4-Adaptin, clathrin adaptor complex large subunit, putative member of AP-4 complex
chr5	2271430	2274471	2271474	2274118	+	Cre05.g234666.t1.1	Cre05.g234666.t1.1		2271430,2271586,2271797,2272145,2272469,2272751,2272925,2273379,2273634,2273980	2271501,2271663,2271964,2272294,2272564,2272805,2273148,2273494,2273832,2274471	
chr5	2271430	2274471	2271474	2274118	+	Cre05.g234666.t2.1	Cre05.g234666.t2.1		2271430,2271586,2271797,2272145,2272469,2272751,2272925,2273379,2273634,2273980	2271501,2271663,2271964,2272294,2272564,2272805,2273115,2273494,2273832,2274471	
chr5	2277310	2283926	2278035	2283800	+	Cre05.g234667.t1.1	Cre05.g234667.t1.1		2277310,2278700,2279059,2279422,2279891,2280517,2281226,2281669,2282000,2283109,2283610	2278059,2278774,2279178,2279491,2280075,2280716,2281370,2281750,2282871,2283296,2283926	
chr5	2296077	2309279	2296913	2309214	-	PYK3	Cre05.g234700.t1.1		2309187,2308839,2308563,2308034,2307344,2307011,2306701,2306455,2305944,2305535,2305007,2304693,2303653,2303391,2302870,2302544,2302022,2301681,2301130,2300841,2300522,2300157,2299789,2299408,2299074,2298770,2298451,2298137,2297743,2297353,2296077	2309279,2309053,2308645,2308332,2307808,2307193,2306872,2306563,2306049,2305666,2305363,2304848,2304502,2303473,2303259,2302660,2302336,2301848,2301492,2301012,2300710,2300398,2299973,2299585,2299295,2298931,2298633,2298296,2297977,2297563,2297105	Multi-domain pyruvate kinase (EC 2.7.1.40), with four domains in a single large protein; possible single domain variants are indicated as PYK3b & PYK3c; catalyses the final step in glycolysis, which is the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP
chr5	2309334	2311422	2309734	2311284	-	CGLD25	Cre05.g234750.t1.2		2310783,2310362,2310069,2309334	2311422,2310532,2310158,2309938	
chr5	2311699	2317719	2312520	2317240	-	Cre05.g234801.t1.1	Cre05.g234801.t1.1		2316978,2316557,2316298,2316048,2315716,2315470,2315275,2315070,2314832,2314625,2314436,2314236,2313942,2313699,2313461,2313163,2312790,2311699	2317719,2316905,2316416,2316141,2315837,2315497,2315344,2315095,2314910,2314719,2314468,2314322,2314041,2313746,2313511,2313249,2312850,2312603	null-allele mutant was isolated (PMID 29743196)
chr5	2317850	2326701	2318061	2325994	+	Cre05.g234850.t1.1	Cre05.g234850.t1.1		2317850,2320493,2323063,2323428,2323961,2324249,2324551,2324968,2325232,2325561,2325851	2320346,2322887,2323293,2323766,2324153,2324313,2324767,2325073,2325316,2325645,2326701	
chr5	2337137	2339409	2338013	2339091	-	Cre05.g234892.t1.1	Cre05.g234892.t1.1		2339060,2338889,2338236,2337137	2339409,2338929,2338329,2338093	
chr5	2337394	2339409	2338013	2339091	-	Cre05.g234892.t2.1	Cre05.g234892.t2.1		2339060,2338889,2338236,2337394	2339409,2338929,2338329,2338093	
chr5	2339704	2342969	2339769	2342763	-	Cre05.g234934.t1.1	Cre05.g234934.t1.1		2341538,2339704	2342969,2340989	
chr5	2343114	2345869	2344523	2345744	-	Cre05.g234976.t1.1	Cre05.g234976.t1.1		2345735,2345487,2345014,2343114	2345869,2345579,2345160,2344676	
chr5	2343114	2346079	2345087	2345744	-	Cre05.g234976.t2.1	Cre05.g234976.t2.1		2345735,2345487,2343114	2346079,2345572,2345160	
chr5	2354804	2356699	2356413	2356630	-	Cre05.g235018.t1.1	Cre05.g235018.t1.1		2354804	2356699	
chr5	2354884	2358119	2356537	2358091	-	Cre05.g235060.t1.1	Cre05.g235060.t1.1		2357121,2356791,2354884	2358119,2356898,2356566	
chr5	2371420	2381741	2371459	2379772	+	Cre05.g235102.t1.1	Cre05.g235102.t1.1		2371420,2372186,2372396,2377308,2378045,2379153	2371490,2372285,2376354,2377349,2378144,2381741	
chr5	2383064	2387159	2386058	2386983	-	Cre05.g235144.t1.1	Cre05.g235144.t1.1		2383064	2387159	
chr5	2398397	2400553	2398790	2400448	-	Cre05.g235186.t1.1	Cre05.g235186.t1.1		2400421,2400228,2398397	2400553,2400332,2399975	
chr5	2434294	2436415	2434449	2436391	+	CSU4	Cre05.g235228.t1.1		2434294,2434762,2435144,2435644	2434683,2435028,2435566,2436415	probably tranposon-derived
chr5	2439338	2440393	2439946	2440339	-	Cre05.g235355.t1.2	Cre05.g235355.t1.2		2440238,2439338	2440393,2440148	
chr5	2440494	2450801	2441223	2450204	+	Cre05.g235400.t1.2	Cre05.g235400.t1.2		2440494,2444799	2444743,2450801	
chr5	2454358	2460296	2455183	2459987	-	Cre05.g235450.t1.2	Cre05.g235450.t1.2		2459800,2459508,2458848,2458206,2457740,2457415,2457125,2456858,2456446,2456221,2455803,2454358	2460296,2459542,2459351,2458358,2457829,2457491,2457234,2456955,2456548,2456351,2455940,2455522	
chr5	2460474	2468685	2460812	2467629	+	KIN7-1	Cre05.g235500.t1.1		2460474,2461565,2461831,2462112,2462433,2462668,2463126,2463523,2463841,2464300,2464937,2465385,2466054,2466389,2466664,2467611	2461333,2461666,2461990,2462222,2462549,2462901,2463284,2463642,2464158,2464801,2465170,2465734,2466131,2466487,2467521,2468685	kinesin-7 family
chr5	2469034	2481015	2469408	2480492	+	Cre05.g235550.t1.1	Cre05.g235550.t1.1		2469034,2469582,2470072,2475268,2476175,2476861,2477202,2477487,2478039,2478453,2478814,2479331	2469432,2469884,2475104,2476000,2476642,2476995,2477339,2477821,2478273,2478656,2479149,2481015	
chr5	2487114	2489395	2487142	2489120	+	Cre05.g235600.t1.1	Cre05.g235600.t1.1		2487114,2487629	2487493,2489395	
chr5	2490594	2495678	2490719	2493688	+	Cre05.g235650.t1.1	Cre05.g235650.t1.1		2490594,2490965,2491452,2491853,2492503,2492673,2493136	2490893,2491202,2491680,2492129,2492556,2492807,2495678	
chr5	2498261	2501563	2498474	2501426	-	Cre05.g235700.t1.2	Cre05.g235700.t1.2		2501332,2501131,2500852,2500609,2500146,2499340,2498979,2498261	2501563,2501259,2500901,2500743,2500431,2499620,2499051,2498716	
chr5	2501628	2514693	2502415	2514428	-	MSH6	Cre05.g235750.t1.2		2514307,2513687,2512941,2512527,2512191,2511713,2511290,2510886,2510517,2509970,2509346,2508686,2508303,2507800,2507269,2506858,2505921,2504014,2503272,2502867,2501628	2514693,2514175,2513441,2512707,2512293,2511865,2511352,2510988,2510647,2510044,2509474,2509036,2508383,2507935,2507448,2506970,2506070,2504168,2503434,2502990,2502705	functions in mismatch repair (MMR); in other systems, MSH6 interacts with MSH2 to repair GT mismatches and short insertion/deletion mismatches; May contain additional coding sequence in intronic N-island PMID: 27175017
chr5	2514824	2518835	2515063	2517891	+	FBB19	Cre05.g235800.t1.2		2514824,2515399,2515717,2516525,2516829,2517111,2517428,2517795	2515123,2515476,2516257,2516622,2516954,2517194,2517550,2518835	Conserved protein found in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr5	2518838	2522343	2519172	2521735	-	Cre05.g235850.t1.1	Cre05.g235850.t1.1		2521680,2520761,2518838	2522343,2521410,2520582	
chr5	2518838	2522343	2519172	2521735	-	Cre05.g235850.t2.1	Cre05.g235850.t2.1		2521680,2520761,2518838	2522343,2521410,2520579	
chr5	2522794	2529381	2523285	2528824	+	Cre05.g235900.t1.1	Cre05.g235900.t1.1		2522794,2523131,2524388,2524792,2525371,2526350,2526750,2528518	2522982,2524208,2524531,2525080,2526158,2526576,2528326,2529381	
chr5	2529554	2533460	2529896	2533041	+	Cre05.g235950.t1.2	Cre05.g235950.t1.2		2529554,2529856,2530379,2530864,2531227,2532241,2532588,2532898	2529732,2530182,2530557,2531041,2532077,2532390,2532711,2533460	
chr5	2534014	2551405	2534162	2550569	+	Cre05.g236000.t1.1	Cre05.g236000.t1.1		2534014,2534297,2534706,2535138,2536046,2536658,2537161,2537653,2538559,2538899,2539827,2540248,2540796,2541210,2541948,2544891,2545529,2545878,2546129,2547191,2547612,2547886,2548146,2548437,2548796,2549101,2549672,2550479	2534219,2534398,2534878,2535812,2536349,2536808,2537343,2538068,2538627,2539531,2539930,2540596,2540951,2541596,2544770,2545165,2545610,2545936,2546943,2547264,2547690,2548002,2548219,2548538,2548938,2549470,2550265,2551405	
chr5	2551494	2555425	2551593	2554690	+	Cre05.g236039.t1.2	Cre05.g236039.t1.2		2551494,2551839,2552132,2553045,2553616,2554324	2551701,2551991,2552638,2553277,2554006,2555425	
chr5	2555428	2574163	2556008	2573980	-	Cre05.g236050.t1.1	Cre05.g236050.t1.1		2573908,2573503,2573283,2572963,2572710,2572388,2571870,2571380,2570907,2570734,2570286,2570067,2569712,2569204,2568585,2567676,2565945,2565769,2565484,2563055,2562587,2560133,2559898,2559525,2559058,2558808,2558585,2558276,2557589,2555428	2574163,2573790,2573390,2573169,2572841,2572573,2572280,2571730,2571260,2570796,2570618,2570164,2569886,2569563,2569100,2568446,2567546,2565840,2565651,2565357,2562941,2562445,2560008,2559749,2559384,2558941,2558702,2558428,2558165,2557390	
chr5	2574210	2582433	2574735	2582220	-	Cre05.g236100.t1.1	Cre05.g236100.t1.1		2582154,2581978,2581675,2581050,2580669,2580349,2574210	2582433,2582070,2581788,2581453,2580912,2580465,2580174	
chr5	2582556	2585485	2582879	2585006	+	Cre05.g236150.t1.1	Cre05.g236150.t1.1		2582556,2582864,2583201,2583489,2583790,2584087,2584524,2584931	2582686,2583006,2583293,2583571,2583846,2584224,2584652,2585485	
chr5	2585524	2588039	2585945	2587913	-	Cre05.g236183.t1.1	Cre05.g236183.t1.1		2586947,2586438,2586206,2585524	2588039,2586816,2586344,2586051	
chr5	2589130	2606001	2589301	2605363	+	Cre05.g236216.t1.1	Cre05.g236216.t1.1		2589130,2589779,2590347,2590867,2591332,2593283,2593822,2594331,2595131,2595749,2596212,2597675,2598007,2598552,2599004,2599630,2600460,2601087,2601785,2602280,2602742,2602928,2603841	2589481,2589945,2590389,2591013,2591862,2593405,2594058,2594668,2595316,2595836,2597443,2597756,2598183,2598646,2599102,2599724,2600580,2601237,2601861,2602425,2602772,2603749,2606001	
chr5	2606050	2619641	2606275	2618221	+	Cre05.g236250.t1.1	Cre05.g236250.t1.1		2606050,2606469,2607441,2607733,2608260,2608626,2608869,2609400,2610259,2610819,2611152,2611879,2613770,2614124,2614433,2614782,2615069,2615663,2615986,2616288,2616583,2616844,2617212,2617576,2617984	2606308,2607038,2607506,2607933,2608412,2608691,2609122,2609933,2610553,2610995,2611645,2613577,2613895,2614285,2614558,2614919,2615215,2615788,2616120,2616449,2616717,2617002,2617337,2617713,2619641	
chr5	2619644	2626089	2620674	2626062	-	Cre05.g236300.t1.1	Cre05.g236300.t1.1		2625822,2625619,2625260,2623539,2621948,2621064,2620777,2619644	2626089,2625732,2625523,2625025,2623387,2621841,2620858,2620682	
chr5	2626144	2629809	2626604	2629016	-	Cre05.g236350.t1.1	Cre05.g236350.t1.1		2627360,2626144	2629809,2627036	
chr5	2629910	2631951	2630151	2630752	+	Cre05.g236375.t1.1	Cre05.g236375.t1.1		2629910	2631951	
chr5	2631954	2640499	2633077	2640210	-	Cre05.g236400.t1.1	Cre05.g236400.t1.1		2640120,2639725,2639524,2639210,2638882,2638383,2634732,2634370,2634018,2631954	2640499,2639865,2639588,2639354,2638980,2638652,2638166,2634501,2634209,2633917	Related to GCN5.  Contains WD4 repeats
chr5	2640554	2643329	2640827	2641506	-	Cre05.g236450.t1.1	Cre05.g236450.t1.1		2642946,2642332,2641437,2640554	2643329,2642429,2641951,2641163	
chr5	2640554	2643329	2640827	2641179	-	Cre05.g236450.t2.1	Cre05.g236450.t2.1		2642946,2642332,2641437,2640554	2643329,2642429,2641951,2641237	
chr5	2644760	2656791	2644939	2656470	+	Cre05.g236500.t1.1	Cre05.g236500.t1.1		2644760,2645176,2645532,2646028,2646427,2646893,2647768,2648581,2649650,2650223,2650735,2651165,2651949,2652987,2653517,2653942,2654648,2655002,2656268	2645048,2645219,2645620,2646106,2646473,2647007,2647895,2649458,2649807,2650376,2650829,2651229,2652038,2653116,2653579,2654097,2654709,2655664,2656791	
chr5	2656840	2669821	2657149	2668668	+	Cre05.g236501.t1.2	Cre05.g236501.t1.2		2656840,2657067,2657588,2658077,2658387,2658777,2659277,2660085,2666532,2666951,2667546	2656882,2657242,2657839,2658192,2658540,2658875,2659777,2666285,2666759,2667193,2669821	
chr5	2669831	2671779	2671312	2671655	-	Cre05.g236525.t1.1	Cre05.g236525.t1.1		2669831	2671779	
chr5	2671940	2675061	2672023	2674456	+	Cre05.g236550.t1.2	Cre05.g236550.t1.2		2671940,2674024	2673700,2675061	
chr5	2675110	2682166	2675137	2681721	+	Cre05.g236600.t1.1	Cre05.g236600.t1.1		2675110,2675594,2676123,2677768,2679319,2681191,2681441,2681721	2675284,2675884,2677603,2679201,2680051,2681304,2681507,2682166	
chr5	2682390	2683369	2683153	2683331	-	Cre05.g236626.t1.1	Cre05.g236626.t1.1		2682390	2683369	
chr5	2683461	2694531	2683671	2693535	+	CYG63	Cre05.g236650.t1.1		2683461,2684058,2684503,2684926,2685446,2686012,2686365,2686606,2687032,2687349,2687861,2688102,2688539,2688939,2689442,2689909,2690292,2690801,2691504,2691780,2693535	2683812,2684168,2684631,2685090,2685598,2686148,2686400,2686698,2687177,2687485,2687940,2688180,2688620,2688985,2689559,2689968,2690387,2690970,2691593,2693485,2694531	
chr5	2694800	2707461	2695075	2706727	+	Cre05.g236700.t1.1	Cre05.g236700.t1.1		2694800,2695572,2696569,2697305,2697860,2698174,2699121,2700176,2700683,2700977,2701477,2701804,2702188,2702660,2703048,2703603,2703968,2704430,2704904,2705465,2705545,2706082	2695247,2696176,2696886,2697429,2697947,2698804,2699794,2700284,2700729,2701060,2701533,2701945,2702273,2702768,2703409,2703696,2704125,2704520,2705133,2705482,2705634,2707461	
chr5	2694800	2707461	2695075	2706727	+	Cre05.g236700.t2.1	Cre05.g236700.t2.1		2694800,2695572,2696569,2697305,2697860,2698174,2699121,2700176,2700683,2700977,2701477,2701804,2702188,2702660,2703048,2703603,2703968,2704430,2704904,2705545,2706082	2695247,2696176,2696886,2697429,2697947,2698804,2699794,2700284,2700729,2701060,2701533,2701945,2702273,2702768,2703409,2703696,2704125,2704520,2705133,2705634,2707461	
chr5	2707464	2712679	2708044	2712265	-	Cre05.g236750.t1.1	Cre05.g236750.t1.1		2712593,2709199,2708736,2708312,2707464	2712679,2712340,2708810,2708458,2708161	
chr5	2712734	2725819	2713192	2724222	-	Cre05.g236802.t1.1	Cre05.g236802.t1.1		2725447,2724144,2723790,2723594,2720631,2720417,2719979,2715259,2715113,2714674,2714415,2712734	2725819,2724333,2723900,2723652,2720757,2720518,2720179,2719833,2715119,2715008,2714555,2714254	null-allele mutant was isolated (PMID 29743196)
chr5	2726474	2738189	2727028	2737968	-	Cre05.g236850.t1.1	Cre05.g236850.t1.1		2737884,2737529,2737248,2736885,2736662,2736167,2729944,2729535,2729137,2726474	2738189,2737651,2737312,2737047,2736760,2736478,2736045,2729711,2729340,2728996	Related to GCN5.  May have beta-N-acetylhexosaminidase activity
chr5	2738244	2749249	2739237	2749020	-	Cre05.g236878.t1.1	Cre05.g236878.t1.1		2748933,2748559,2748226,2747900,2747454,2746726,2746321,2743882,2742082,2741738,2741364,2738244	2749249,2748678,2748293,2748056,2747552,2747184,2746572,2745759,2743722,2741923,2741561,2741154	Related to GCN5
chr5	2749334	2756399	2749633	2756276	-	Cre05.g236907.t1.2	Cre05.g236907.t1.2		2756174,2755926,2755602,2755306,2755067,2754350,2754060,2753669,2751443,2751171,2750835,2749334	2756399,2756042,2755726,2755459,2755165,2754907,2754140,2753927,2753493,2751308,2750975,2750692	
chr5	2756463	2762599	2756999	2762207	-	Cre05.g236926.t1.2	Cre05.g236926.t1.2		2762072,2761887,2761571,2761274,2760619,2760277,2758574,2758307,2757996,2756463	2762599,2761954,2761715,2761372,2761056,2760426,2760160,2758429,2758127,2757803	null-allele mutant was isolated (PMID 29743196)
chr5	2762655	2774679	2763128	2774371	-	Cre05.g236950.t1.1	Cre05.g236950.t1.1		2774333,2773740,2773320,2773064,2772640,2772348,2772144,2769058,2768819,2768308,2767790,2767181,2766646,2765919,2765554,2764920,2762655	2774679,2774133,2773405,2773133,2772678,2772362,2772212,2769192,2768902,2768543,2767943,2767503,2766781,2766191,2765709,2765034,2764597	SNF2-related helicase.  ChromoDB CHR341; null-allele passenger mutation was isolated (PMID 29743196)
chr5	2774928	2780428	2776150	2780311	-	MAP1D	Cre05.g237000.t1.2		2780159,2778942,2777955,2777516,2777143,2776555,2774928	2780428,2779077,2778111,2777671,2777258,2776716,2776285	Involved in N-terminal maturation of proteins; Metallopeptidase family M24; probably targeted to both chloroplast and mitochondrial [PMID: 11060042, 14532271]
chr5	2780600	2784931	2780701	2784177	+	CGLD27	Cre05.g237050.t1.1		2780600,2781662,2782554,2782972,2783414,2783971	2780922,2781773,2782690,2783041,2783534,2784931	
chr5	2784980	2786804	2785013	2786024	+	MOT52	Cre05.g237100.t1.2		2784980,2785122,2785307,2785460,2785725,2785948	2785041,2785216,2785378,2785502,2785812,2786804	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr5	2786989	2788889	2787528	2788427	-	Cre05.g237150.t1.2	Cre05.g237150.t1.2		2788398,2788155,2787942,2786989	2788889,2788213,2788017,2787724	
chr5	2789040	2797971	2789370	2796461	+	DRP4C	Cre05.g237200.t1.1		2789040,2789779,2790221,2790677,2791197,2791876,2792258,2792621,2792985,2793569,2794063,2794430,2794756,2795259,2795680,2796000,2796327	2789383,2789912,2790348,2790937,2791455,2791950,2792365,2792783,2793325,2793732,2794293,2794507,2794908,2795454,2795844,2796123,2797971	Similar to DRP4 (MX-like) class of Dynamin-like GTPases
chr5	2789040	2797971	2789370	2796461	+	DRP6	Cre05.g237200.t2.1		2789040,2789779,2790221,2790677,2791197,2791876,2792258,2792621,2792985,2793569,2794063,2794430,2794756,2795259,2795680,2796000,2796327	2789383,2789912,2790348,2790937,2791455,2791950,2792365,2792783,2793325,2793732,2794293,2794507,2794908,2795454,2795811,2796123,2797971	Similar to DRP4 (MX-like) class of Dynamin-like GTPases
chr5	2797974	2806181	2799148	2805986	-	Cre05.g237250.t1.1	Cre05.g237250.t1.1		2805976,2805495,2805047,2804352,2803596,2801720,2801174,2800780,2800482,2799920,2797974	2806181,2805751,2805178,2804562,2803819,2801977,2801377,2800977,2800565,2800023,2799686	
chr5	2806290	2808805	2806633	2808256	+	Cre05.g237283.t1.1	Cre05.g237283.t1.1		2806290,2807795,2808122	2806825,2807918,2808805	
chr5	2806290	2808805	2806754	2808256	+	Cre05.g237283.t2.1	Cre05.g237283.t2.1		2806290,2807519,2807795,2808122	2806825,2807636,2807918,2808805	
chr5	2808964	2812959	2809793	2812758	-	Cre05.g237350.t1.2	Cre05.g237350.t1.2		2812665,2812075,2811702,2811345,2811014,2810532,2810246,2808964	2812959,2812208,2811855,2811398,2811093,2810598,2810306,2809924	
chr5	2808964	2812959	2809793	2812758	-	Cre05.g237350.t2.1	Cre05.g237350.t2.1		2812665,2812075,2811819,2811345,2811014,2810532,2810246,2808964	2812959,2812208,2811855,2811398,2811093,2810598,2810306,2809924	
chr5	2813770	2817321	2814078	2815959	+	DAE1	Cre05.g237400.t1.2		2813770,2814336,2814547,2814865,2815620	2814228,2814425,2814715,2815085,2817321	putative diaminopimelate (DAP) epimerase (EC:5.1.1.7); lysine biosynthesis pathway (dapF); organelle (mitochondria) targeting predicted by Target-P; plastid location expected based on homology
chr5	2817337	2820699	2818001	2820442	-	PSRP1	Cre05.g237450.t1.2		2820622,2820388,2820252,2819981,2819625,2819337,2819034,2818639,2818348,2817337	2820699,2820458,2820318,2820120,2819734,2819430,2819162,2818750,2818439,2818061	Chloroplast small ribosomal subunit protein Plastid-Specific Ribosomal Protein 1. This is a different protein from plastid ribosomal protein S1, product of the PRPS1 gene.
chr5	2822614	2824659	2823542	2824543	-	Cre05.g237500.t1.2	Cre05.g237500.t1.2		2824372,2822614	2824659,2824235	
chr5	2824874	2827479	2825377	2827348	-	Cre05.g237526.t1.1	Cre05.g237526.t1.1		2827262,2827048,2826342,2825967,2825721,2824874	2827479,2827159,2826467,2826038,2825860,2825471	
chr5	2828640	2829951	2829121	2829890	+	Cre05.g237550.t1.2	Cre05.g237550.t1.2		2828640	2829951	
chr5	2829963	2836929	2830711	2835782	-	Cre05.g237600.t1.1	Cre05.g237600.t1.1		2836768,2836456,2836286,2835906,2835740,2835475,2835133,2834441,2834175,2833741,2833449,2833107,2832343,2831226,2829963	2836929,2836558,2836347,2836158,2835786,2835548,2835259,2834910,2834226,2833866,2833577,2833232,2832894,2832182,2831005	
chr5	2837030	2844171	2837263	2844140	+	Cre05.g237650.t1.1	Cre05.g237650.t1.1		2837030,2837647,2837977,2838193,2838470,2838749,2838956,2839203,2839475,2839721,2839990,2840196,2840566,2840845,2841048,2841297,2841594,2841922,2842351,2842689,2843527,2843814,2844011	2837480,2837696,2838079,2838297,2838595,2838846,2839083,2839353,2839573,2839849,2840085,2840408,2840670,2840940,2841160,2841483,2841812,2842214,2842579,2843366,2843640,2843870,2844171	
chr5	2837030	2844171	2837263	2844140	+	Cre05.g237650.t2.1	Cre05.g237650.t2.1		2837030,2837647,2837977,2838193,2838470,2838749,2838956,2839203,2839475,2839721,2839990,2840196,2840566,2840845,2841048,2841297,2841594,2841922,2842354,2842689,2843527,2843814,2844011	2837480,2837696,2838079,2838297,2838595,2838846,2839083,2839353,2839573,2839849,2840085,2840408,2840670,2840940,2841160,2841483,2841812,2842214,2842579,2843366,2843640,2843870,2844171	
chr5	2844181	2845479	2844928	2845364	-	NOP10	Cre05.g237700.t1.2		2845310,2844181	2845479,2845069	Structural Component of H/ACA snoRNPs which catalyze the snoRNA-guided pseudouridylation of the pre-rRNA and other RNA molecules
chr5	2845586	2847941	2845824	2847174	+	Cre05.g237750.t1.2	Cre05.g237750.t1.2		2845586,2845957,2846194,2846459,2846818,2847114	2845890,2846055,2846315,2846564,2846922,2847941	
chr5	2848030	2856091	2848164	2855512	+	CYG64	Cre05.g237800.t1.1		2848030,2848699,2848994,2849317,2849750,2850220,2850999,2851551,2851845,2852262,2852661,2853341,2853690,2854007	2848439,2848831,2849122,2849481,2849908,2850710,2851147,2851687,2851901,2852403,2852819,2853394,2853785,2856091	
chr5	2856124	2857339	2856142	2856905	-	Cre05.g237850.t1.2	Cre05.g237850.t1.2		2856124	2857339	
chr5	2858690	2861901	2860502	2861797	+	Cre05.g237870.t1.1	Cre05.g237870.t1.1		2858690,2859854,2860325,2860765,2861234,2861797	2859278,2859979,2860642,2861038,2861338,2861901	
chr5	2858690	2864031	2861976	2862826	+	Cre05.g237890.t1.1	Cre05.g237890.t1.1		2858690,2859854,2860325,2860770,2861234,2861797,2862136,2862523	2859278,2859979,2860642,2861038,2861338,2861987,2862340,2864031	
chr5	2864079	2867989	2866622	2866797	-	Cre05.g237910.t1.1	Cre05.g237910.t1.1		2867500,2864079	2867989,2866850	
chr5	2870404	2872699	2871357	2872291	-	Cre05.g237930.t1.1	Cre05.g237930.t1.1		2872033,2870404	2872699,2871585	
chr5	2876520	2884948	2876824	2883121	+	Cre05.g237950.t1.1	Cre05.g237950.t1.1		2876520,2877199,2877703,2878126,2878724,2882482	2876887,2877271,2877773,2878375,2882115,2884948	
chr5	2885000	2888127	2885084	2887125	+	Cre05.g238000.t1.2	Cre05.g238000.t1.2		2885000,2885425,2886254	2885330,2886134,2888127	
chr5	2888134	2903969	2888354	2903294	-	Cre05.g238052.t1.1	Cre05.g238052.t1.1		2903865,2902685,2902261,2901500,2898101,2895262,2892640,2892205,2891880,2891284,2890889,2890655,2890176,2889756,2889409,2888863,2888134	2903969,2903548,2902392,2901823,2901270,2897921,2895134,2892462,2891984,2891694,2890987,2890762,2890274,2889854,2889507,2888961,2888606	
chr5	2904130	2916166	2904919	2914568	+	PTK25	Cre05.g238100.t1.2		2904130,2905153,2905437,2905825,2906483,2906910,2907195,2907582,2908237,2908629,2908919,2909307,2909554,2909821,2910286,2910608,2911049,2911797,2912292,2912773,2913698,2914310	2904931,2905293,2905674,2905910,2906701,2907050,2907432,2907667,2908455,2908769,2909156,2909392,2909647,2910010,2910384,2910762,2911266,2911973,2912458,2913177,2913890,2916166	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr5	2916549	2918779	2917928	2918286	-	Cre05.g238140.t1.2	Cre05.g238140.t1.2		2916549	2918779	
chr5	2920230	2924851	2920571	2924483	+	Cre05.g238150.t1.2	Cre05.g238150.t1.2		2920230,2921125,2921910,2922631,2923149,2924206	2920756,2921192,2921977,2922784,2924049,2924851	null-allele passenger mutation was isolated (PMID 29743196)
chr5	2924884	2930382	2925529	2930343	-	Cre05.g238200.t1.2	Cre05.g238200.t1.2		2930232,2930061,2929890,2929373,2928730,2928221,2927276,2926917,2926337,2926066,2924884	2930382,2930133,2929954,2929454,2928812,2928329,2927376,2926985,2926410,2926145,2925684	
chr5	2933060	2936249	2933338	2935311	+	Cre05.g238250.t1.2	Cre05.g238250.t1.2		2933060,2934142,2934540	2934019,2934264,2936249	Basic-leucine zipper (bZIP) transcription factor
chr5	2937292	2949459	2937830	2949241	-	Cre05.g238260.t1.1	Cre05.g238260.t1.1		2949209,2948730,2948435,2947742,2947290,2946735,2946313,2945559,2945028,2944505,2944139,2943824,2943149,2941244,2940721,2940239,2939415,2938903,2938288,2937292	2949459,2948859,2948494,2947833,2947368,2946913,2946404,2945739,2945115,2944765,2944268,2943962,2943251,2941273,2940867,2940327,2939541,2939015,2938373,2937901	May contain additional coding sequence in intronic N-island PMID: 27175017; null-allele mutant was isolated (PMID 29743196)
chr5	2949804	2951449	2950243	2951344	-	Cre05.g238270.t1.1	Cre05.g238270.t1.1		2951215,2950796,2950424,2949804	2951449,2950930,2950621,2950249	
chr5	2951580	2953921	2951690	2953101	+	FAP205	Cre05.g238280.t1.1		2951580,2951966,2952486	2951717,2952046,2953921	null-allele mutant was isolated (PMID 29743196)
chr5	2954040	2961224	2954575	2960700	+	DRP7	Cre05.g238290.t1.1		2954040,2954453,2954911,2955377,2955615,2955931,2956283,2956610,2956964,2957532,2957970,2958489,2958828,2959255,2959729,2960175,2960578	2954332,2954580,2955075,2955550,2955636,2956008,2956390,2956760,2957301,2957704,2958170,2958566,2958980,2959450,2959860,2960298,2961224	
chr5	2961909	2964298	2962086	2963200	+	Cre05.g238301.t1.1	Cre05.g238301.t1.1		2961909,2962550	2962198,2964298	
chr5	2965466	2968124	2966470	2968029	-	Cre05.g238311.t1.1	Cre05.g238311.t1.1		2967764,2967241,2966896,2965466	2968124,2967542,2966967,2966620	
chr5	2965466	2968704	2966470	2968029	-	Cre05.g238311.t2.1	Cre05.g238311.t2.1		2967764,2967241,2966896,2965466	2968704,2967542,2966967,2966620	
chr5	2969289	2976374	2970441	2976168	-	Cre05.g238322.t1.1	Cre05.g238322.t1.1		2975959,2975469,2974973,2974191,2973698,2973073,2972356,2971849,2971348,2971030,2969289	2976374,2975566,2975094,2974313,2973766,2973165,2972448,2971935,2971458,2971122,2970588	
chr5	2978242	2979235	2978598	2979190	-	PSAD	Cre05.g238332.t1.1		2978242	2979235	Acceptor side subunit, involved in ferredoxin docking
chr5	2983285	2987270	2983681	2986733	+	Cre05.g238343.t1.1	Cre05.g238343.t1.1		2983285,2983943,2985172,2986733	2983792,2984203,2986162,2987270	
chr5	2988005	2989036	2988158	2988366	+	Cre05.g238353.t1.1	Cre05.g238353.t1.1		2988005	2989036	
chr5	2990195	2992836	2990385	2990920	+	Cre05.g238364.t1.1	Cre05.g238364.t1.1		2990195,2990590	2990469,2992836	
chr5	2992885	3008531	2993100	3007456	+	Cre05.g238374.t1.1	Cre05.g238374.t1.1		2992885,2993410,2994998,2995652,2996573,2996967,2997576,2998675,2999130,2999624,3000590,3001708,3002620,3003210,3003577,3006235	2993150,2994635,2995173,2995732,2996665,2997083,2997724,2998731,2999190,3000193,3001203,3001780,3002705,3003282,3006012,3008531	
chr5	3008696	3012405	3010047	3011503	-	Cre05.g238400.t1.1	Cre05.g238400.t1.1		3011674,3011346,3008696	3012405,3011543,3011129	
chr5	3012894	3018335	3013922	3017393	-	Cre05.g238450.t1.1	Cre05.g238450.t1.1		3017579,3017362,3016494,3015055,3014083,3012894	3018335,3017402,3017219,3016071,3014753,3013946	
chr5	3018626	3024767	3018758	3024450	+	Cre05.g238500.t1.1	Cre05.g238500.t1.1		3018626,3019265,3019570,3020143,3020541,3020945,3021250,3022238,3023128,3023609,3024306	3019042,3019347,3019939,3020246,3020641,3021031,3021560,3022953,3023206,3023720,3024767	
chr5	3024816	3029337	3025365	3027626	+	Cre05.g238550.t1.1	Cre05.g238550.t1.1		3024816,3025360,3026433	3025227,3026116,3029337	
chr5	3029411	3032735	3029869	3031844	-	PHC36	Cre05.g238600.t1.2		3032037,3031803,3031418,3030275,3029411	3032735,3031878,3031617,3031261,3030078	
chr5	3034210	3039095	3036005	3038332	-	PHC5	Cre05.g238650.t1.1		3038310,3038187,3037782,3036438,3034210	3039095,3038256,3037981,3037613,3036214	pherophorin-C5 (PHC5) [PMID: 16367971; Genbank entry DQ196111]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain. (partial sequence, codes only for the N-terminal domain; reason: sequence gap)
chr5	3039142	3044935	3040159	3044146	-	PHC35	Cre05.g238687.t1.1		3044339,3044105,3043651,3043044,3042462,3042043,3041972,3040426,3039142	3044935,3044184,3043898,3043219,3042734,3042328,3041981,3041631,3040226	belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain.
chr5	3045922	3046715	3046229	3046553	-	CSB27	Cre05.g238724.t1.1		3046698,3046469,3045922	3046715,3046579,3046352	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr5	3046940	3050415	3047680	3050065	-	Cre05.g238761.t1.1	Cre05.g238761.t1.1		3050049,3049245,3046940	3050415,3049391,3047751	
chr5	3051206	3055367	3051334	3054120	+	Cre05.g238800.t1.1	Cre05.g238800.t1.1		3051206,3051418,3051636,3051848	3051349,3051492,3051742,3055367	
chr5	3055370	3057405	3055919	3057230	-	PHC17	Cre05.g238850.t1.2		3057173,3057020,3056534,3055370	3057405,3057108,3056819,3056258	pherophorin-C17 (PHC17) [PMID: 16367971]; partial sequence similar to extracellular matrix protein (cell wall protein) pherophorin-C4 [Genbank entry DQ196110], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain.
chr5	3057556	3065717	3057672	3065220	+	HEL25	Cre05.g238900.t1.1		3057556,3058109,3058713,3059528,3059958,3060425,3061035,3061716,3062278,3062707,3063027,3063455,3063860,3064183,3064714	3057760,3058276,3059161,3059598,3060085,3060576,3061124,3061792,3062332,3062775,3063080,3063621,3063946,3064334,3065717	
chr5	3065766	3069927	3066618	3068665	+	Cre05.g238935.t1.2	Cre05.g238935.t1.2		3065766,3066502	3066297,3069927	
chr5	3070059	3072921	3070417	3072792	-	CGLD33	Cre05.g238950.t1.1		3072618,3072366,3072023,3071379,3070993,3070059	3072921,3072467,3072107,3071494,3071079,3070645	
chr5	3073086	3088707	3073764	3088178	+	Cre05.g239000.t1.1	Cre05.g239000.t1.1		3073086,3074049,3074410,3074757,3075374,3075810,3076207,3076730,3077090,3077632,3078105,3078360,3078792,3079327,3079744,3080167,3080690,3081005,3081306,3081855,3082174,3082603,3082985,3083149,3084306,3084660,3085085,3085577,3086111,3086528,3086916,3087562,3087977	3073833,3074258,3074462,3075008,3075587,3075894,3076474,3076896,3077181,3077748,3078182,3078494,3078869,3079473,3080009,3080448,3080829,3081087,3081532,3081968,3082264,3082773,3083098,3084069,3084365,3084746,3085182,3085752,3086344,3086604,3087064,3087685,3088707	
chr5	3088780	3098655	3089418	3098298	-	Cre05.g239050.t1.2	Cre05.g239050.t1.2		3098243,3097869,3097402,3095944,3095578,3095097,3094818,3094192,3093333,3092490,3092042,3091330,3088780	3098655,3097961,3097484,3096164,3095638,3095180,3094907,3094308,3093738,3092974,3092080,3091612,3090344	Shows iron-type alcohol dehydrogenase conserved site
chr5	3098876	3103207	3099071	3103074	+	Cre05.g239067.t1.1	Cre05.g239067.t1.1		3098876,3099714,3100150,3100873,3101275,3101722,3102130,3102523,3102837	3099551,3099782,3100259,3101063,3101333,3101847,3102219,3102636,3103207	
chr5	3103220	3104845	3103255	3104479	-	Cre05.g239083.t1.1	Cre05.g239083.t1.1		3104424,3104050,3103583,3103220	3104845,3104142,3103665,3103276	
chr5	3105001	3110977	3105252	3110961	+	FPG2	Cre05.g239100.t1.1		3105001,3105895,3106331,3107054,3107456,3107939,3108347,3108740,3109054,3109632,3109953	3105732,3105963,3106440,3107244,3107514,3108064,3108436,3108853,3109286,3109698,3110977	Involved in folate biosynthesis; may also be a tubulin-tyrosine ligase (see TTL series)
chr5	3111026	3113951	3111408	3113018	+	Cre05.g239151.t1.1	Cre05.g239151.t1.1		3111026,3111907	3111689,3113951	
chr5	3125511	3128000	3126502	3127865	-	FAP275	Cre05.g239200.t1.2		3127682,3127403,3127059,3126742,3125511	3128000,3127455,3127170,3126844,3126558	Flagellar Associated Protein, found in the flagellar proteome
chr5	3128116	3138417	3128320	3137486	+	Cre05.g239250.t1.2	Cre05.g239250.t1.2		3128116,3128548,3128693,3128880,3129175,3129426,3129718,3129994,3130410,3130756,3131068,3132255,3132693,3133089,3133548,3133979,3134507,3136849,3137381	3128412,3128620,3128749,3128956,3129257,3129505,3129843,3130186,3130481,3130903,3131957,3132497,3132863,3133181,3133651,3134148,3134767,3137059,3138417	
chr5	3138506	3145662	3138613	3144281	+	Cre05.g239300.t1.1	Cre05.g239300.t1.1		3138506,3139627,3140312,3140895,3141394,3141717,3142425,3144188	3139116,3140089,3140731,3141104,3141564,3142088,3143933,3145662	
chr5	3145716	3148494	3145937	3147361	+	Cre05.g239350.t1.1	Cre05.g239350.t1.1		3145716,3147190	3146969,3148494	
chr5	3150186	3152978	3150930	3151609	+	Cre05.g239400.t1.1	Cre05.g239400.t1.1		3150186	3152978	
chr5	3153762	3163123	3153856	3162731	+	Cre05.g239450.t1.1	Cre05.g239450.t1.1		3153762,3154154,3154510,3154840,3155392,3156342,3156988,3157281,3158016,3159788,3160268,3160645,3161764,3162184,3162489	3153992,3154318,3154633,3155179,3156098,3156762,3157114,3157836,3159627,3159989,3160432,3161527,3161948,3162270,3163123	
chr5	3163392	3171985	3163853	3170381	+	FAP38	Cre05.g239500.t1.1		3163392,3164531,3164859,3165334,3165703,3166207,3167460,3167780,3168048,3168406,3168753,3169274,3169619,3169849,3170309	3164242,3164571,3164983,3165480,3165816,3166266,3167567,3167858,3168157,3168612,3169016,3169390,3169675,3170073,3171985	
chr5	3172048	3177503	3172586	3176329	+	Cre05.g239550.t1.1	Cre05.g239550.t1.1		3172048,3172437,3173199,3173507,3173870,3174277,3174457,3174705,3175046,3175343,3175657	3172319,3172903,3173242,3173676,3174076,3174352,3174509,3174881,3175145,3175443,3177503	
chr5	3177592	3182581	3177964	3182113	+	Cre05.g239600.t1.2	Cre05.g239600.t1.2		3177592,3177944,3178534,3178803,3179127,3179761,3180053,3180387,3180766,3181197,3181574	3177798,3178332,3178568,3178972,3179414,3179857,3180105,3180500,3180828,3181296,3182581	
chr5	3177592	3182581	3177964	3182113	+	Cre05.g239600.t2.1	Cre05.g239600.t2.1		3177592,3178534,3178803,3179127,3179761,3180053,3180387,3180766,3181197,3181574	3178332,3178568,3178972,3179414,3179857,3180105,3180500,3180828,3181296,3182581	
chr5	3182722	3188083	3183296	3186802	+	Cre05.g239650.t1.1	Cre05.g239650.t1.1		3182722,3183209,3184025,3184416,3184837,3185075,3185647,3186192,3186539	3182859,3183738,3184149,3184556,3184912,3185301,3185746,3186320,3188083	
chr5	716761	718635	717790	718613	-	Cre05.g239652.t1.1	Cre05.g239652.t1.1		718577,718320,716761	718635,718382,718027	
chr5	3188222	3192124	3188691	3191334	+	Cre05.g239700.t1.2	Cre05.g239700.t1.2		3188222,3188652,3189272,3189587,3190088,3190494,3190876	3188398,3189085,3189432,3189935,3190317,3190593,3192124	
chr5	3192126	3198561	3192724	3198285	-	ARS13	Cre05.g239750.t1.2		3198192,3197930,3197608,3197294,3197051,3196859,3196611,3196274,3195997,3195619,3195378,3195122,3194532,3194202,3193848,3193259,3193011,3192126	3198561,3198005,3197724,3197355,3197134,3196936,3196708,3196361,3196044,3195763,3195472,3195257,3194968,3194317,3193943,3193396,3193097,3192797	
chr5	3198692	3207018	3198813	3206377	+	ARS14	Cre05.g239800.t2.1		3198692,3199170,3199486,3199693,3199883,3200282,3200613,3200942,3201178,3201638,3202096,3202420,3202793,3203151,3203539,3204063,3204854,3205400,3205652,3205917,3206307	3198952,3199244,3199558,3199736,3199944,3200381,3200707,3201000,3201319,3201706,3202134,3202551,3202931,3203377,3203742,3204670,3204976,3205498,3205747,3206036,3207018	
chr5	3198482	3207018	3198813	3206377	+	ARS14	Cre05.g239800.t1.1		3198482,3198751,3199170,3199486,3199693,3199883,3200282,3200613,3200942,3201178,3201638,3202096,3202420,3202793,3203151,3203539,3204063,3204854,3205400,3205652,3205917,3206307	3198532,3198952,3199244,3199558,3199736,3199944,3200381,3200707,3201000,3201319,3201706,3202134,3202551,3202931,3203377,3203742,3204670,3204976,3205498,3205747,3206036,3207018	
chr5	3207072	3215097	3207102	3214746	+	PHO4	Cre05.g239850.t1.1		3207072,3207494,3207875,3208115,3209077,3209512,3209898,3210478,3210777,3211072,3211638,3212037,3212546,3212860,3213181,3213491,3213764,3214149,3214542	3207260,3207599,3208016,3208461,3209208,3209567,3210115,3210517,3210849,3211227,3211841,3212137,3212650,3212945,3213240,3213536,3213843,3214375,3215097	Similar to phosphate-deficiency inducible alkaline phosphatase/phosphodiesterase, APaseD, encoded by phoD, from Bacillus subtilis.
chr5	3207072	3215097	3207102	3214746	+	PHO4	Cre05.g239850.t2.1		3207072,3207494,3207875,3208115,3208692,3209077,3209512,3209898,3210478,3210777,3211072,3211638,3212037,3212546,3212860,3213181,3213491,3213764,3214149,3214542	3207260,3207599,3208016,3208438,3208711,3209208,3209567,3210115,3210517,3210849,3211227,3211841,3212137,3212650,3212945,3213240,3213536,3213843,3214375,3215097	Similar to phosphate-deficiency inducible alkaline phosphatase/phosphodiesterase, APaseD, encoded by phoD, from Bacillus subtilis.
chr5	3207072	3215097	3207102	3214746	+	PHO4	Cre05.g239850.t3.1		3207072,3207494,3207875,3208304,3208692,3209077,3209512,3209898,3210478,3210777,3211072,3211638,3212037,3212546,3212860,3213181,3213491,3213764,3214149,3214542	3207260,3207599,3208016,3208438,3208711,3209208,3209567,3210115,3210517,3210849,3211227,3211841,3212137,3212650,3212945,3213240,3213536,3213843,3214375,3215097	Similar to phosphate-deficiency inducible alkaline phosphatase/phosphodiesterase, APaseD, encoded by phoD, from Bacillus subtilis.
chr5	3215152	3223813	3215233	3222338	+	ARS15	Cre05.g239900.t1.1		3215152,3215498,3215736,3216033,3216242,3216620,3217135,3217554,3217962,3218205,3218726,3218967,3219279,3219638,3219964,3220598,3220872,3221157,3221547,3221842,3222262	3215365,3215573,3215808,3216076,3216303,3216700,3217203,3217616,3217996,3218295,3218773,3219111,3219387,3219759,3220453,3220619,3220987,3221252,3221684,3221928,3223813	
chr5	3223816	3229451	3224625	3228754	-	Cre05.g239950.t1.1	Cre05.g239950.t1.1		3229058,3228371,3227250,3226269,3223816	3229451,3228768,3228084,3226844,3225993	
chr5	3229596	3232391	3230295	3232365	-	Cre05.g239978.t1.2	Cre05.g239978.t1.2		3232155,3232017,3231145,3230914,3229596	3232391,3232056,3231884,3230983,3230295	
chr5	3229596	3232391	3230210	3232365	-	Cre05.g239978.t2.1	Cre05.g239978.t2.1		3232155,3232017,3231145,3230914,3229596	3232391,3232056,3231884,3230983,3230210	
chr5	3232504	3236263	3232630	3235600	+	Cre05.g240000.t1.2	Cre05.g240000.t1.2		3232504,3232804,3233198,3233672,3233996,3234393,3234972,3235266	3232684,3232890,3233343,3233711,3234048,3234543,3235084,3236263	
chr5	3236412	3242453	3236751	3241657	+	Cre05.g240050.t1.1	Cre05.g240050.t1.1		3236412,3237467,3238650,3239028,3239588,3240157,3241367	3236916,3238296,3238689,3239096,3239700,3240923,3242453	
chr5	3242572	3251563	3242983	3251061	+	EXN9	Cre05.g240100.t1.1		3242572,3242944,3245003,3245331,3245473,3246055,3246705,3247308,3248061,3249009,3249567,3249804,3250122,3250935	3242819,3244368,3245119,3245373,3245665,3246412,3246920,3247432,3248691,3249195,3249653,3249925,3250332,3251563	
chr5	3251566	3254691	3252405	3254372	-	UBC16	Cre05.g240150.t1.2		3254342,3254069,3253622,3252975,3251566	3254691,3254164,3253750,3253104,3252482	
chr5	3254762	3257803	3255274	3256562	+	Cre05.g240200.t1.2	Cre05.g240200.t1.2		3254762,3255721	3255522,3257803	
chr5	3254792	3257563	3255274	3256562	+	Cre05.g240200.t2.1	Cre05.g240200.t2.1		3254792,3255721	3255522,3257563	
chr5	3257682	3270713	3258097	3270678	+	Cre05.g240225.t1.1	Cre05.g240225.t1.1		3257682,3258270,3259273,3260526,3260834,3261161,3261484,3261797,3262032,3262729,3263240,3263985,3264618,3265057,3265436,3266036,3266434,3266743,3267412,3268029,3269271,3270408,3270678	3258149,3258838,3260024,3260633,3260869,3261269,3261537,3261896,3262066,3262814,3263283,3264070,3264701,3265064,3265537,3266073,3266521,3267008,3267560,3268117,3269470,3270581,3270713	null-allele mutant was isolated (PMID 29743196)
chr5	3257962	3270713	3258097	3270678	+	Cre05.g240225.t2.1	Cre05.g240225.t2.1		3257962,3258270,3259273,3260526,3260834,3261161,3261484,3261797,3262032,3262729,3263240,3263985,3264618,3265057,3265436,3266036,3266434,3266743,3267412,3268029,3269271,3270408,3270678	3258149,3258838,3260024,3260633,3260869,3261269,3261537,3261896,3262066,3262814,3263283,3264070,3264701,3265064,3265537,3266073,3266521,3267008,3267560,3268117,3269470,3270581,3270713	null-allele mutant was isolated (PMID 29743196)
chr5	3271192	3277003	3271396	3276062	+	Cre05.g240251.t1.1	Cre05.g240251.t1.1		3271192,3272637,3272912,3273101,3273290,3274093,3274433,3274685,3274886,3275257,3275471	3272537,3272726,3273001,3273190,3274002,3274370,3274610,3274804,3275125,3275379,3277003	
chr5	3306126	3307251	3306147	3307159	-	Cre05.g240300.t1.1	Cre05.g240300.t1.1		3306901,3306771,3306579,3306126	3307251,3306824,3306644,3306156	
chr5	3308232	3314842	3308621	3314135	+	Cre05.g240350.t1.1	Cre05.g240350.t1.1		3308232,3309444,3311299,3311978,3312580,3312991,3313931	3309095,3310268,3311438,3312039,3312668,3313071,3314842	null-allele passenger mutation was isolated (PMID 29743196)
chr5	3314846	3317689	3315352	3317659	-	SOM2	Cre05.g240400.t1.2		3317646,3317410,3316961,3316514,3316110,3315740,3314846	3317689,3317496,3317056,3316713,3316226,3315892,3315445	Contains conserved aldo/keto reductase site and phosphopantetheine attachment site
chr5	3319906	3321139	3320387	3320995	-	Cre05.g240450.t1.2	Cre05.g240450.t1.2		3320875,3319906	3321139,3320543	
chr5	3321250	3327291	3321432	3326954	+	Cre05.g240500.t1.1	Cre05.g240500.t1.1		3321250,3321923,3322889,3323571,3324046,3324513,3324817,3325239,3326429	3321650,3322622,3323030,3323653,3324130,3324587,3324910,3326091,3327291	
chr5	3327341	3331021	3327478	3330960	+	Cre05.g240533.t1.2	Cre05.g240533.t1.2		3327341,3328813,3329629,3330014	3328495,3329379,3329786,3331021	
chr5	3331070	3333411	3331132	3331891	+	TLA1	Cre05.g240550.t1.2		3331070,3331447	3331330,3333411	identified by Mitra and Melis [PMID: 212986]; insertional mutant has reduced antenna size [PMID: 12721848]
chr5	3333414	3336169	3334712	3335835	-	Cre05.g240600.t1.1	Cre05.g240600.t1.1		3335668,3335167,3333414	3336169,3335230,3334979	
chr5	3336234	3343249	3336615	3343032	-	DNJ32	Cre05.g240650.t1.2		3342923,3342438,3341839,3341237,3340588,3340071,3339457,3339095,3338654,3337879,3336234	3343249,3342531,3342001,3341312,3340756,3340143,3339513,3339181,3338820,3338118,3337705	DnaJ-like protein; contains N-terminal J-domain (pfam226) and a Zn-finger double-stranded RNA-binding domain; weak similarity with Dictyostelium Q54LL9 and Brachydanio rerio Q6PGY5, which is considered to be a nuclear, Zn-ion-binding, nucleic acid binding protein
chr5	3343380	3357791	3343507	3356958	+	FAP378	Cre05.g240700.t1.1		3343380,3344054,3344765,3345164,3346695,3347287,3347538,3347983,3348642,3349018,3349235,3349732,3350075,3350454,3350735,3351192,3351662,3352156,3352540,3352893,3353181,3353773,3354248,3354736,3355140,3355590,3356007	3343643,3344320,3344904,3346345,3346819,3347382,3347755,3348082,3348792,3349067,3349319,3349826,3350148,3350584,3350829,3351409,3351774,3352272,3352672,3352989,3353325,3353899,3354384,3354855,3355287,3355750,3357791	
chr5	3357804	3361779	3358580	3361693	-	TEF17	Cre05.g240750.t1.2		3361531,3360513,3359108,3357804	3361779,3361373,3360322,3358898	Protein with unknown function, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr5	3362124	3364009	3363199	3363855	-	NUO17	Cre05.g240800.t1.2		3363655,3362124	3364009,3363518	Mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 17 kDa subunit precursor, mitochondrial [ACCESSION AAS48192] similar to mammal complex I ESSS subunit, Yarrowia lipolytica NUWM subunit and At3g57785 gene product from Arabidopsis complex I [PMID: 15710684; PMID: 15450959]
chr5	3364142	3372831	3364187	3372014	+	THIC	Cre05.g240850.t1.2		3364142,3364558,3365088,3365515,3365880,3366237,3367940,3368416,3368891,3369189,3369623,3370107,3370625,3371089,3371483,3371861	3364361,3364617,3365192,3365583,3366065,3366303,3368007,3368572,3368955,3369316,3369806,3370284,3370692,3371271,3371551,3372831	involved in the regulation of thiamine biosynthesis. Precise catalytic function of this ThiC homolog is not known, though it participates in the formation of 4-amino-5-hydroxymethyl-2-methylpyrimidine
chr5	3372844	3385119	3374823	3384868	-	Cre05.g240900.t1.2	Cre05.g240900.t1.2		3384738,3384333,3383594,3382806,3382515,3381394,3381037,3380325,3379599,3379127,3378659,3378403,3378098,3377497,3377135,3376676,3376073,3375528,3372844	3385119,3384551,3383733,3383021,3382538,3382133,3381132,3380542,3379849,3379261,3378753,3378479,3378228,3377598,3377216,3376834,3376290,3375651,3375299	
chr5	3372844	3385119	3374823	3384868	-	Cre05.g240900.t2.1	Cre05.g240900.t2.1		3384738,3384333,3383594,3382806,3381394,3381037,3380325,3379599,3379127,3378659,3378403,3378098,3377497,3377135,3376676,3376073,3375528,3372844	3385119,3384551,3383733,3383021,3382133,3381132,3380542,3379849,3379261,3378753,3378479,3378228,3377598,3377216,3376834,3376290,3375651,3375299	
chr5	3386136	3388340	3386354	3387518	+	Cre05.g240950.t1.1	Cre05.g240950.t1.1		3386136,3386547,3387486	3386479,3387025,3388340	
chr5	3386136	3388340	3386354	3387727	+	Cre05.g240950.t2.1	Cre05.g240950.t2.1		3386136,3386547,3387719	3386479,3387025,3388340	
chr5	3388344	3390879	3389260	3390631	-	Cre05.g241000.t1.2	Cre05.g241000.t1.2		3390553,3390140,3389673,3388344	3390879,3390231,3389826,3389308	
chr5	3391120	3393441	3391210	3393407	+	Cre05.g241050.t1.2	Cre05.g241050.t1.2		3391120,3391413,3391820,3392173,3392632,3393032	3391287,3391542,3391896,3392462,3392819,3393441	
chr5	3393444	3394719	3394164	3394585	-	Cre05.g241100.t1.2	Cre05.g241100.t1.2		3393444	3394719	
chr5	3394820	3407895	3394883	3407610	+	Cre05.g241150.t1.1	Cre05.g241150.t1.1		3394820,3395311,3395863,3396264,3396518,3396834,3397325,3397849,3398279,3398798,3399226,3399684,3400121,3400736,3401350,3401795,3402237,3402779,3403081,3403476,3403813,3404404,3405026,3405461,3406090,3406609	3395147,3395635,3396085,3396375,3396589,3396920,3397427,3398003,3398482,3398983,3399357,3399990,3400482,3400990,3401559,3401926,3402386,3402846,3403221,3403610,3404056,3404496,3405100,3405562,3406363,3407895	
chr5	3408220	3422381	3408274	3422126	+	Cre05.g241202.t1.1	Cre05.g241202.t1.1		3408220,3408615,3408897,3409339,3409768,3410025,3410516,3410752,3411020,3411438,3411641,3412146,3412485,3412734,3413004,3413314,3414263,3414726,3415195,3415601,3415982,3416449,3416816,3419632,3419929,3421000,3421379	3408286,3408709,3408967,3409439,3409802,3410087,3410591,3410868,3411091,3411503,3411820,3412229,3412609,3412797,3413103,3413492,3414465,3414840,3415293,3415708,3416038,3416510,3416855,3419709,3420135,3421149,3422381	null-allele mutant was isolated (PMID 29743196)
chr5	3422384	3429819	3422973	3429441	-	Cre05.g241250.t1.1	Cre05.g241250.t1.1		3429362,3429101,3425884,3424868,3424230,3423829,3423246,3422384	3429819,3429232,3428917,3425741,3424446,3423973,3423378,3423015	
chr5	3430639	3431469	3431001	3431260	-	SMPF	Cre05.g241300.t1.2		3430639	3431469	putative small nuclear riboprotein F snRNP-F, SNRPF, Sm protein F, SmF
chr5	3432073	3449959	3432890	3449893	-	Cre05.g241350.t1.1	Cre05.g241350.t1.1		3449830,3449662,3449417,3448680,3448228,3447275,3446802,3446235,3445646,3444947,3444633,3444082,3443594,3443130,3442825,3442237,3441701,3441489,3441002,3439752,3439438,3438985,3438589,3438155,3437619,3437372,3437012,3436352,3435706,3435273,3434749,3434120,3433784,3433337,3432073	3449959,3449747,3449557,3448776,3448286,3447410,3446963,3446519,3445825,3445081,3444694,3444157,3443738,3443282,3442895,3442412,3441843,3441562,3441120,3439859,3439509,3439116,3438680,3438273,3437813,3437448,3437132,3436498,3436004,3435351,3435027,3434217,3433851,3433543,3433150	
chr5	3450044	3458819	3451310	3458221	-	Cre05.g241400.t1.1	Cre05.g241400.t1.1		3457901,3457555,3456920,3456537,3456073,3455586,3454896,3454539,3454029,3453643,3452586,3451905,3450044	3458819,3457685,3457069,3456646,3456174,3455867,3455053,3454616,3454317,3453747,3453494,3452438,3451562	
chr5	3459480	3466791	3459667	3465578	+	FTSY	Cre05.g241450.t1.2		3459480,3459994,3460282,3461385,3462074,3462323,3462879,3463392,3463709,3464107,3464376,3464933,3465518	3459769,3460125,3460359,3461492,3462130,3462421,3463007,3463467,3463788,3464163,3464448,3465027,3466791	Conserved Hypothetical Protein. Similar to the Chloroplast SRP Receptor. Involved in protein import into the Thylakoid.
chr5	3466940	3470031	3467457	3469465	+	MOT30	Cre05.g241500.t1.1		3466940,3467810,3468384,3468640,3468921,3469265	3467619,3468202,3468458,3468785,3469042,3470031	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr5	3470080	3471621	3470112	3470650	+	Cre05.g241550.t1.2	Cre05.g241550.t1.2		3470080,3470514	3470438,3471621	
chr5	1879575	1881854	1881197	1881755	-	Cre05.g241600.t1.2	Cre05.g241600.t1.2		1881627,1879575	1881854,1881372	
chr5	1883495	1885706	1883795	1884265	+	Cre05.g241629.t1.1	Cre05.g241629.t1.1		1883495,1884102	1883896,1885706	
chr5	1890155	1894504	1890494	1894122	+	Cre05.g241630.t1.1	Cre05.g241630.t1.1		1890155,1890775,1892645,1893394,1893886	1890516,1890911,1892839,1893439,1894504	
chr5	1906889	1913050	1907128	1911250	+	Cre05.g241631.t1.1	Cre05.g241631.t1.1		1906889,1908154,1908513	1907886,1908312,1913050	
chr5	1913313	1918728	1914195	1918645	-	Cre05.g241632.t1.1	Cre05.g241632.t1.1		1913313	1918728	
chr5	1919319	1924520	1919727	1924263	+	Cre05.g241633.t1.1	Cre05.g241633.t1.1		1919319,1920737,1921141,1921620,1922044,1922489,1923162,1923684,1924125	1920128,1920794,1921263,1921679,1922127,1922641,1923230,1923728,1924520	
chr5	1924531	1941578	1924957	1941100	-	HAV1	Cre05.g241634.t1.1		1938984,1933419,1931440,1926184,1925899,1925457,1924531	1941578,1938806,1933343,1931200,1925939,1925537,1925122	The first 4750 residues are enriched in G, A and P and show no homology to other proteins
chr5	1941743	1951278	1942174	1951096	-	Cre05.g241635.t1.1	Cre05.g241635.t1.1		1950188,1949738,1949584,1949430,1948434,1947828,1947192,1946980,1946662,1946244,1945594,1945444,1945054,1944427,1943901,1943534,1943116,1942833,1942475,1941743	1951278,1949912,1949664,1949527,1949046,1948055,1947521,1947010,1946729,1946336,1946030,1945492,1945203,1944471,1944011,1943590,1943313,1942909,1942583,1942255	
chr5	1951403	1956718	1953891	1956343	-	Cre05.g241636.t1.1	Cre05.g241636.t1.1		1955942,1955707,1955262,1951403	1956718,1955848,1955433,1954865	
chr5	1956937	1961087	1957372	1960851	-	IFT46	Cre05.g241637.t1.1		1960815,1960610,1960458,1960271,1960027,1959728,1959083,1958447,1958086,1957707,1956937	1961087,1960675,1960521,1960366,1960079,1959799,1959205,1958603,1958231,1957837,1957463	Flagellar Associated Protein; belongs to core of IFT-B particle
chr5	1961332	1968478	1963127	1968121	-	Cre05.g241638.t1.1	Cre05.g241638.t1.1		1968288,1966363,1965864,1965354,1964972,1964601,1964331,1963945,1961332	1968478,1968140,1966016,1965431,1965024,1964742,1964387,1964039,1963734	
chr5	1968804	1972437	1968911	1971726	+	Cre05.g241639.t1.1	Cre05.g241639.t1.1		1968804,1969554,1970322,1971130,1971546	1969166,1969681,1970415,1971219,1972437	
chr5	1972443	1980988	1972809	1980428	-	Cre05.g241640.t1.1	Cre05.g241640.t1.1		1980573,1980334,1977783,1977456,1976753,1976241,1975718,1974979,1974506,1972443	1980988,1980490,1978097,1977669,1977135,1976316,1975855,1975421,1974719,1974289	
chr5	1972443	1980988	1972809	1980428	-	Cre05.g241640.t2.1	Cre05.g241640.t2.1		1980573,1980334,1977783,1977456,1976753,1976241,1975718,1974979,1974506,1972443	1980988,1980484,1978097,1977669,1977135,1976316,1975855,1975421,1974719,1974289	
chr5	1978640	1980988	1980431	1980847	-	Cre05.g241641.t1.1	Cre05.g241641.t1.1		1980573,1978640	1980988,1980490	
chr5	1982913	1985448	1982945	1984982	-	Cre05.g241642.t1.1	Cre05.g241642.t1.1		1984937,1984406,1983497,1982913	1985448,1984502,1983552,1983386	
chr5	1984913	1987808	1987521	1987723	-	Cre05.g241643.t1.1	Cre05.g241643.t1.1		1984913	1987808	
chr5	1989539	1991730	1989970	1991498	+	Cre05.g241644.t1.1	Cre05.g241644.t1.1		1989539	1991730	
chr5	1991779	1993690	1992067	1993418	+	Cre05.g241645.t1.1	Cre05.g241645.t1.1		1991779,1991964	1991790,1993690	
chr5	1993739	1997968	1994458	1994990	+	Cre05.g241646.t1.1	Cre05.g241646.t1.1		1993739	1997968	
chr5	2000553	2002048	2001029	2001663	-	Cre05.g241647.t1.1	Cre05.g241647.t1.1		2000553	2002048	
chr5	2003509	2004940	2003541	2004617	+	Cre05.g241648.t1.1	Cre05.g241648.t1.1		2003509,2004570	2004133,2004940	
chr5	2005019	2007013	2005196	2005830	+	Cre05.g241649.t1.1	Cre05.g241649.t1.1		2005019	2007013	
chr5	1871305	1878167	1871466	1877536	+	Cre05.g241650.t1.1	Cre05.g241650.t1.1		1871305,1871821,1872232,1872441,1872730,1873085,1873374,1873594,1873802,1874288,1874578,1874771,1874990,1875195,1875558,1875850,1876194,1876416,1876765,1877094,1877449	1871558,1872085,1872339,1872483,1872833,1873174,1873479,1873664,1874136,1874415,1874627,1874860,1875029,1875424,1875710,1875928,1876308,1876528,1876955,1877327,1878167	
chr5	2009950	2011645	2009985	2011519	-	Cre05.g241651.t1.1	Cre05.g241651.t1.1		2009950	2011645	
chr5	2012150	2016037	2012394	2015563	+	Cre05.g241652.t1.1	Cre05.g241652.t1.1		2012150,2014051,2014422,2014897,2015563	2013966,2014238,2014792,2015457,2016037	
chr5	2016080	2019772	2016276	2019619	-	Cre05.g241653.t1.1	Cre05.g241653.t1.1		2019607,2019438,2019101,2018738,2018642,2018450,2018193,2017997,2016561,2016080	2019772,2019544,2019359,2019039,2018681,2018573,2018380,2018135,2017937,2016407	
chr5	2020308	2026091	2020555	2025273	+	Cre05.g241654.t1.1	Cre05.g241654.t1.1		2020308,2020745,2021027,2021201,2021524,2021708,2021849,2022184,2022472,2022678,2022884,2023210,2023647,2023802,2024006,2024482,2024824,2025162	2020585,2020800,2021081,2021316,2021574,2021726,2021900,2022377,2022545,2022709,2022994,2023283,2023722,2023850,2024218,2024644,2024937,2026091	
chr5	2020308	2026407	2020555	2025273	+	Cre05.g241654.t2.1	Cre05.g241654.t2.1		2020308,2020745,2021027,2021201,2021524,2021708,2021849,2022184,2022472,2022678,2022884,2023210,2023647,2023802,2024006,2024482,2024824,2025162	2020585,2020800,2021081,2021316,2021574,2021726,2021900,2022377,2022545,2022709,2022994,2023283,2023722,2023850,2024218,2024644,2024937,2026407	
chr5	2020308	2026407	2020555	2024965	+	Cre05.g241654.t3.1	Cre05.g241654.t3.1		2020308,2020745,2021027,2021201,2021524,2021708,2021849,2022184,2022472,2022678,2022884,2023210,2023647,2023802,2024006,2024482,2024824	2020585,2020800,2021081,2021316,2021574,2021726,2021900,2022377,2022545,2022709,2022994,2023283,2023722,2023850,2024218,2024644,2026407	
chr5	2026110	2048045	2026190	2048006	-	Cre05.g241655.t1.1	Cre05.g241655.t1.1		2047984,2047810,2047318,2046712,2046076,2045460,2026110	2048045,2047885,2047459,2046784,2046176,2045482,2026257	
chr5	1859685	1864380	1859965	1863827	+	PDK3	Cre05.g241750.t1.2		1859685,1860583,1861247,1861640,1861938,1862257,1862889,1863212,1863440,1863724	1860310,1860692,1861313,1861721,1862080,1862399,1862928,1863288,1863535,1864380	Closest homolog of human enzyme; inhibits pyruvate dehydrogenase by phosphorylation
chr5	1865529	1871184	1867242	1870784	-	Cre05.g241751.t1.1	Cre05.g241751.t1.1		1871006,1867700,1865529	1871184,1870790,1867590	
chr5	1845504	1849186	1845622	1848529	+	ACLA1	Cre05.g241850.t1.2		1845504,1846082,1846486,1846910,1847445,1847737,1848147	1845658,1846231,1846671,1847103,1847547,1847939,1849186	ATP Citrate Lyase (ACL), subunit A (EC 2.3.3.8); ATP-citrate synthase, subunit A; location uncertain, but likely to be cytosol; Similar to Arabidopsis ATP citrate lyase subunit A (GenBank NP_187317), which is similar to the amino half of the human ACL [PMID: 12376641]. ACL is responsible for generating acetyl-CoA in the cytosol of Arabidopsis. ACLB1 represents the equivalent of the carboxy half of the human ACL; null-allele mutant was isolated (PMID 29743196)
chr5	1849239	1855924	1849939	1855809	-	Cre05.g241851.t1.1	Cre05.g241851.t1.1		1855581,1853946,1852520,1850226,1849239	1855924,1855439,1853627,1852457,1849989	
chr5	1850960	1855924	1850978	1855809	-	Cre05.g241851.t3.1	Cre05.g241851.t3.1		1855581,1853946,1852520,1851157,1850960	1855924,1855439,1853627,1852457,1851044	
chr5	1849239	1853674	1849939	1853582	-	Cre05.g241851.t2.1	Cre05.g241851.t2.1		1853575,1852520,1850226,1849239	1853674,1853374,1852457,1849989	
chr5	1853670	1855924	1853831	1855809	-	Cre05.g241851.t4.1	Cre05.g241851.t4.1		1855581,1853670	1855924,1855439	
chr5	1841725	1845446	1842101	1844239	+	Cre05.g241900.t1.1	Cre05.g241900.t1.1		1841725,1842291,1842402,1842620,1842857,1844015,1844207	1842223,1842334,1842478,1842711,1843817,1844048,1845446	
chr5	1838345	1840778	1838469	1840177	+	VDAC2	Cre05.g241950.t1.2		1838345,1839229,1840099	1838965,1839485,1840778	Outer mitochondrial membrane protein porin.
chr5	1830301	1836438	1830503	1835724	+	CHLD	Cre05.g242000.t1.2		1830301,1831070,1831618,1832023,1832357,1832795,1833043,1833856,1834150,1834465,1834836,1835071	1830690,1831350,1831749,1832189,1832519,1832842,1833165,1834026,1834236,1834689,1834902,1836438	Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D); orthologous to the bacterial magnesium chelatase subunits BchD, and other plant magnesium chelatase subunits ChlD; [PMID: 9359397]; forms an ATP dependent complex with the ChlI subunit (probably a double hexameric ring complex) before acting on the protoporphyrin which is bound to the ChlH protein to insert magnesium [PMID: 11469861]. Transcript is light regulated and may be diurnal and/or circadian [PMID: 16228385]. Predicted chloroplast targeting sequence amino acids 1-62 by ChloroP.
chr5	1825778	1829704	1826581	1829267	-	Cre05.g242050.t1.2	Cre05.g242050.t1.2		1827095,1825778	1829704,1826866	
chr5	1814653	1825684	1815840	1825653	-	SUB8	Cre05.g242100.t1.1		1825534,1825220,1824813,1824365,1823465,1823053,1822813,1822510,1822048,1821651,1821441,1820913,1820614,1820265,1819772,1819182,1818906,1818530,1818355,1818020,1817837,1817479,1817043,1816738,1816288,1814653	1825684,1825300,1824922,1824504,1824221,1823147,1822855,1822620,1822277,1821729,1821503,1821017,1820672,1820345,1820013,1819246,1819000,1818598,1818395,1818135,1817895,1817625,1817245,1816898,1816538,1816113	
chr5	1802699	1806004	1803198	1805883	-	Cre05.g242178.t1.2	Cre05.g242178.t1.2		1805657,1804879,1804252,1803740,1802699	1806004,1805339,1804742,1803974,1803366	
chr5	1806187	1813404	1806905	1813157	-	GDP7	Cre05.g242179.t1.1		1813091,1812111,1811723,1810919,1810442,1809800,1809334,1808875,1808327,1807815,1806187	1813404,1812902,1811776,1811284,1810585,1810195,1809516,1808919,1808629,1807930,1807518	
chr5	1813522	1814574	1813977	1814194	-	Cre05.g242180.t1.1	Cre05.g242180.t1.1		1813522	1814574	
chr5	1793315	1801616	1793407	1800970	+	Cre05.g242200.t1.1	Cre05.g242200.t1.1		1793315,1793744,1794087,1794359,1794824,1795273,1795693,1796168,1797172,1797600,1798504,1798751,1799178,1799635,1800475	1793611,1793886,1794173,1794449,1794991,1795371,1795824,1796932,1797396,1798032,1798613,1798825,1799375,1800063,1801616	
chr5	1777775	1784246	1777814	1783586	+	EIF3D	Cre05.g242300.t1.2		1777775,1778059,1778198,1778790,1779737,1780225,1780501,1781419,1781775,1782115,1782299,1782912,1783382	1777983,1778114,1778404,1778936,1779943,1780311,1780575,1781513,1781922,1782186,1782412,1783034,1784246	putative Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta); (IF3Z)
chr5	1787825	1792162	1787960	1789395	+	Cre05.g242301.t1.1	Cre05.g242301.t1.1		1787825,1788288,1788729,1789138	1788178,1788421,1789061,1792162	
chr5	1767430	1777664	1767967	1777395	-	Cre05.g242350.t1.2	Cre05.g242350.t1.2		1777194,1776582,1775962,1775657,1775231,1774833,1774297,1773943,1773438,1773189,1772855,1772506,1772284,1771968,1771603,1771209,1770933,1770592,1770242,1769883,1769409,1768975,1768582,1767430	1777664,1776803,1776084,1775731,1775416,1774943,1774424,1774021,1773578,1773239,1772939,1772578,1772424,1772085,1771740,1771336,1770967,1770689,1770356,1770000,1769496,1769145,1768735,1768383	
chr5	1764549	1766071	1764634	1765439	+	PGR5	Cre05.g242400.t1.2		1764549,1764934,1765335	1764809,1765080,1766071	thylakoid membrane protein involved in cyclic electron flow
chr5	1757011	1760244	1757382	1760096	-	RSP4	Cre05.g242500.t1.2		1759991,1759731,1759489,1759232,1758683,1758441,1758042,1757011	1760244,1759838,1759535,1759295,1758944,1758568,1758292,1757815	Flagellar radial spoke protein 4 (RSP4), a component of the radial spoke head; gene originally termed PF1 [PMID: 7204490; PMID: 1508197; PMID: 16507594; GI:401050]
chr5	1760475	1762486	1760912	1761216	+	Cre05.g242501.t1.1	Cre05.g242501.t1.1		1760475	1762486	
chr5	1762497	1764374	1763768	1764215	-	Cre05.g242502.t1.1	Cre05.g242502.t1.1		1764039,1762497	1764374,1763808	
chr5	1762497	1764374	1764034	1764215	-	Cre05.g242502.t2.1	Cre05.g242502.t2.1		1762497	1764374	
chr5	1752869	1756583	1753766	1756416	-	RSP6	Cre05.g242550.t1.2		1756215,1756040,1755775,1755433,1754997,1754666,1752869	1756583,1756086,1755838,1755554,1755103,1754778,1754492	Flagellar radial spoke protein 6; gene originally termed PF26 [PMID: 16507594; PMID: 7204490; PMID: 1508197; GI:401051]
chr5	1746655	1750576	1747496	1748966	+	CGL106	Cre05.g242600.t1.2		1746655,1747451,1748785	1746865,1748509,1750576	Conserved in the Green Lineage
chr5	1750815	1752736	1751180	1751823	+	Cre05.g242602.t1.1	Cre05.g242602.t1.1		1750815,1751111,1751352,1751681	1750944,1751257,1751417,1752736	
chr5	1734998	1744953	1735745	1743493	+	Cre05.g242650.t1.1	Cre05.g242650.t1.1		1734998,1735745,1736192,1736811,1738141,1738514,1740559,1741012,1743442	1735305,1735976,1736629,1737938,1738353,1740368,1740866,1743234,1744953	
chr5	1729412	1734858	1729636	1734099	-	SUB9	Cre05.g242700.t1.1		1734664,1733802,1733509,1733266,1732996,1732909,1732582,1731896,1731554,1731144,1730682,1729412	1734858,1734236,1733574,1733388,1733053,1732937,1732665,1732174,1731700,1731346,1730980,1730385	
chr5	1717984	1729217	1719358	1728772	-	Cre05.g242750.t1.1	Cre05.g242750.t1.1		1728665,1727812,1726751,1726378,1725929,1725631,1725000,1724693,1724279,1723796,1723434,1723155,1722801,1722432,1722133,1721913,1721495,1721165,1720975,1720451,1720182,1719767,1717984	1729217,1728196,1727581,1726605,1726042,1725718,1725247,1724737,1724357,1723858,1723555,1723214,1722863,1722548,1722273,1721978,1721624,1721337,1721007,1720653,1720336,1720032,1719547	
chr5	1675035	1676568	1675149	1675485	+	Cre05.g242850.t1.2	Cre05.g242850.t1.2		1675035,1675399	1675282,1676568	
chr5	1677302	1690237	1678390	1689702	-	Cre05.g242856.t1.1	Cre05.g242856.t1.1		1689552,1689208,1688764,1688390,1687970,1687493,1687164,1686128,1685360,1684957,1684747,1684350,1684123,1683525,1683274,1682901,1682584,1682285,1682050,1681734,1681368,1681050,1680821,1680447,1680126,1679981,1679566,1679289,1678875,1677302	1690237,1689272,1688893,1688464,1688164,1687543,1687211,1686788,1685538,1685099,1684822,1684463,1684207,1683775,1683318,1682979,1682646,1682406,1682115,1681796,1681484,1681190,1680886,1680576,1680298,1680013,1679768,1679443,1679146,1678699	null-allele mutant was isolated (PMID 29743196)
chr5	1690302	1692047	1691180	1691843	-	Cre05.g242857.t1.1	Cre05.g242857.t1.1		1691829,1690302	1692047,1691403	
chr5	1692258	1703537	1692660	1703028	+	Cre05.g242858.t1.1	Cre05.g242858.t1.1		1692258,1692619,1693116,1693864,1694134,1695033,1695528,1696361,1696743,1696934,1697195,1697475,1698359,1699976,1700687,1701009,1701849,1702320,1702837	1692498,1692927,1693730,1693997,1694926,1695242,1696199,1696546,1696808,1697059,1697347,1698194,1699879,1700483,1700769,1701650,1702031,1702677,1703537	
chr5	1703668	1705102	1703872	1704570	+	Cre05.g242859.t1.1	Cre05.g242859.t1.1		1703668,1703969,1704570	1703882,1704467,1705102	
chr5	1714632	1717737	1714739	1717482	-	Cre05.g242860.t1.1	Cre05.g242860.t1.1		1717417,1716576,1715541,1715170,1714632	1717737,1716951,1716335,1715397,1714886	
chr5	1672238	1674889	1672476	1674258	+	Cre05.g242900.t1.2	Cre05.g242900.t1.2		1672238,1673022,1673384,1673811	1672742,1673115,1673527,1674889	
chr5	1667942	1672133	1668553	1672016	-	MRPL22	Cre05.g242950.t1.1		1671420,1670312,1669658,1669262,1668876,1667942	1672133,1670462,1669735,1669328,1668973,1668697	
chr5	1659848	1667677	1662089	1667474	-	Cre05.g243000.t1.1	Cre05.g243000.t1.1		1667320,1667127,1666864,1666658,1666410,1665977,1665640,1665237,1664485,1664079,1663464,1659848	1667677,1667219,1666923,1666791,1666511,1666166,1665681,1665288,1665152,1664189,1663607,1663165	May contain additional coding sequence in intronic N-island PMID: 27175017
chr5	1655200	1659173	1655270	1658217	+	TRXF2	Cre05.g243050.t1.2		1655200,1655537,1656071,1657225,1657776,1658121	1655411,1655603,1656159,1657305,1657844,1659173	[Lemaire et al (23) Plant Physiol. Biochem. 41, 513-521]. Involved in the activation by light of carbon metabolism enzymes, including calvin cycle enzymes. Probably regulated by glutathionylation [PMID: 16263928]. T
chr5	1632738	1652839	1632851	1652333	+	Cre05.g243150.t1.1	Cre05.g243150.t1.1		1632738,1633066,1633640,1633891,1634283,1634718,1635594,1636231,1637211,1637565,1638090,1638430,1639211,1639954,1640151,1640563,1641239,1641895,1642708,1643020,1645254,1646073,1646736,1647513,1648068,1648669,1649056,1649868,1651166,1652333	1632944,1633129,1633733,1633951,1634381,1635339,1635943,1636671,1637249,1637703,1638174,1638796,1639330,1639998,1640306,1640845,1641421,1642139,1642770,1645008,1645796,1646306,1646972,1647761,1648377,1648751,1649202,1651062,1651360,1652839	
chr5	1652888	1654955	1652995	1653990	+	Cre05.g243151.t1.1	Cre05.g243151.t1.1		1652888,1653091,1653258,1653796,1653990	1653019,1653129,1653604,1653864,1654955	
chr5	1627768	1632689	1627776	1630393	+	Cre05.g243351.t1.2	Cre05.g243351.t1.2		1627768,1628366	1627807,1632689	
chr5	1626428	1627719	1626514	1627699	+	Cre05.g243352.t1.2	Cre05.g243352.t1.2		1626428,1626558	1626519,1627719	
chr5	1621508	1626379	1621861	1625426	+	Cre05.g243353.t1.2	Cre05.g243353.t1.2		1621508,1622972,1623406,1623920,1624721	1622852,1623213,1623631,1624320,1626379	
chr5	1617798	1621455	1618180	1621142	+	Cre05.g243354.t1.2	Cre05.g243354.t1.2		1617798,1618079,1619375,1620489,1620873	1617975,1619169,1619594,1620666,1621455	
chr5	3483134	3484659	3484169	3484568	-	Cre05.g243358.t1.1	Cre05.g243358.t1.1		3484371,3483134	3484659,3484176	
chr5	1562792	1571187	1563715	1569898	-	GOX1	Cre05.g243450.t1.1		1570828,1570552,1570197,1568766,1568331,1568008,1567594,1567337,1567030,1566590,1566175,1565769,1565242,1564793,1562792	1571187,1570649,1570339,1570010,1568451,1568071,1567697,1567394,1567140,1566691,1566267,1565890,1565350,1564943,1564452	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and glyoxal oxidase domain (incl SCOP d1k3ia1, E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain; linked to GOX2, shares similarity in 3'UTR
chr5	1562792	1570687	1563715	1569898	-	GOX1	Cre05.g243450.t2.1		1570552,1570197,1568766,1568331,1568008,1567594,1567337,1567030,1566590,1566175,1565769,1565242,1564793,1562792	1570687,1570339,1570010,1568451,1568071,1567697,1567394,1567140,1566691,1566267,1565890,1565350,1564943,1564452	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and glyoxal oxidase domain (incl SCOP d1k3ia1, E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain; linked to GOX2, shares similarity in 3'UTR
chr5	1572648	1576672	1572769	1576157	+	Cre05.g243451.t1.1	Cre05.g243451.t1.1		1572648,1573475,1573976,1574327,1574891,1575342,1575823,1576105	1572874,1573561,1574035,1574397,1574952,1575446,1575931,1576672	
chr5	1576682	1596927	1577795	1596565	-	Cre05.g243452.t1.1	Cre05.g243452.t1.1		1593097,1592528,1592059,1591766,1589332,1589018,1588565,1585904,1585006,1584288,1583486,1582971,1582350,1581551,1580918,1580331,1579999,1579582,1578971,1578372,1576682	1596927,1592950,1592232,1591870,1591580,1589075,1588675,1588327,1585208,1584642,1583679,1583046,1582437,1581954,1581070,1580425,1580065,1579654,1579202,1578591,1577987	null-allele passenger mutation was isolated (PMID 29743196)
chr5	1597028	1599439	1597415	1599311	+	Cre05.g243453.t1.1	Cre05.g243453.t1.1		1597028,1599137	1598324,1599439	
chr5	1599488	1609599	1600575	1609422	+	Cre05.g243454.t1.1	Cre05.g243454.t1.1		1599488,1599561,1600558,1600676,1601063,1601515,1601959,1603425,1603918,1605439,1606305,1608668,1609413	1599501,1600358,1600607,1600770,1601163,1601601,1602069,1603621,1604098,1605586,1606445,1609233,1609599	
chr5	1609601	1614817	1609979	1614773	-	Cre05.g243455.t1.1	Cre05.g243455.t1.1		1614767,1614272,1613723,1613116,1609601	1614817,1614436,1613881,1613298,1609979	
chr5	1560108	1562789	1561193	1562134	+	Cre05.g243472.t1.2	Cre05.g243472.t1.2		1560108,1560966,1561688	1560454,1561365,1562789	
chr5	1544278	1547128	1544563	1546433	+	Cre05.g243550.t1.2	Cre05.g243550.t1.2		1544278,1544870,1545460,1545659,1545795,1546433	1544759,1544914,1545492,1545673,1546166,1547128	
chr5	1523212	1524817	1524002	1524414	-	GOX2	Cre05.g243600.t1.2		1523212	1524817	Truncated pseudogene with only the C-terminal DUF1929 domain; the substrate of this family of oxidases is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues; linked to GOX1, shares similarity in 3'UTR; null-allele mutant was isolated (PMID 29743196)
chr5	1524872	1527837	1525300	1527707	-	CSU5	Cre05.g243601.t1.1		1527473,1527123,1526543,1524872	1527837,1527389,1527007,1526131	probably tranposon-derived
chr5	1531398	1544229	1533358	1543932	+	Cre05.g243602.t1.1	Cre05.g243602.t1.1		1531398,1532051,1533088,1533840,1534329,1535446,1537512,1539336,1540857,1541628,1543932	1531882,1532138,1533622,1534158,1535299,1535811,1538214,1539918,1541532,1542357,1544229	
chr5	1531398	1544229	1533358	1543932	+	Cre05.g243602.t2.1	Cre05.g243602.t2.1		1531398,1532051,1533088,1533840,1534329,1535492,1537512,1539336,1540857,1541628,1543932	1531882,1532138,1533622,1534158,1535299,1535811,1538214,1539918,1541532,1542357,1544229	
chr5	1520238	1523209	1520490	1522308	+	Cre05.g243650.t1.2	Cre05.g243650.t1.2		1520238,1520797,1521389,1521588,1521724,1522308	1520686,1520841,1521421,1521602,1522095,1523209	
chr5	1511918	1518051	1512035	1516469	+	Cre05.g243700.t1.1	Cre05.g243700.t1.1		1511918,1512471,1512726,1515924	1512046,1512566,1515742,1518051	
chr5	1471447	1474548	1472030	1474540	-	PSB27	Cre05.g243800.t1.2		1474487,1474343,1473996,1473590,1472597,1471447	1474548,1474397,1474133,1473741,1472693,1472072	Cyanobacterial homolog located in thylakoid lumen, associates with PSII intermediate close to CP43, where PsbV binds
chr5	1474962	1494907	1475913	1494569	-	FAP387	Cre05.g243801.t1.1		1494470,1493833,1492758,1492645,1491659,1491261,1490647,1489220,1488759,1488161,1488054,1487598,1486694,1486005,1485335,1485038,1484499,1484263,1483480,1483070,1482081,1479611,1478845,1478323,1477943,1477355,1474962	1494907,1494081,1492928,1492674,1491874,1491317,1490757,1489270,1488839,1488350,1488098,1487707,1487107,1486122,1485445,1485180,1484542,1484428,1483814,1483310,1482734,1479733,1478997,1478439,1478062,1477522,1476915	
chr5	1474962	1494907	1475913	1494569	-	FAP387	Cre05.g243801.t2.1		1494470,1493833,1492758,1491659,1491261,1490647,1489220,1488759,1488161,1488054,1487598,1486694,1486005,1485335,1485038,1484499,1484263,1483480,1483070,1482081,1479611,1478845,1478323,1477943,1477355,1474962	1494907,1494081,1492928,1491874,1491317,1490757,1489270,1488839,1488350,1488098,1487707,1487107,1486122,1485445,1485180,1484542,1484428,1483814,1483310,1482734,1479733,1478997,1478439,1478062,1477522,1476915	
chr5	1474962	1494907	1475913	1494569	-	FAP387	Cre05.g243801.t3.1		1494470,1493833,1492758,1491659,1491261,1490647,1489220,1488759,1488161,1487598,1486694,1486005,1485335,1485038,1484499,1484263,1483480,1483070,1482081,1479611,1478845,1478323,1477943,1477355,1474962	1494907,1494081,1492928,1491874,1491317,1490757,1489270,1488839,1488350,1487707,1487107,1486122,1485445,1485180,1484542,1484428,1483814,1483310,1482734,1479733,1478997,1478439,1478062,1477522,1476915	
chr5	1495098	1503569	1495520	1503044	+	Cre05.g243802.t1.1	Cre05.g243802.t1.1		1495098,1496139,1496648,1497204,1497674,1498314,1499226,1499564,1500159,1500683,1501123,1501875,1502450,1502948	1495626,1496457,1496741,1497353,1497765,1498865,1499339,1499779,1500235,1500928,1501385,1502071,1502639,1503569	
chr5	1505968	1508269	1506161	1508250	+	Cre05.g243803.t1.1	Cre05.g243803.t1.1		1505968,1507266,1507869,1508250	1506316,1507394,1507962,1508269	
chr5	1468508	1471439	1469277	1469587	+	Cre05.g243850.t1.1	Cre05.g243850.t1.1		1468508	1471439	
chr5	1462772	1467637	1462952	1467263	-	Cre05.g243900.t1.1	Cre05.g243900.t1.1		1466835,1466382,1465769,1465155,1464604,1464362,1464099,1463842,1463639,1463094,1462772	1467637,1466614,1465920,1465243,1464684,1464404,1464187,1463884,1463713,1463368,1462998	
chr5	1457812	1462717	1458795	1462408	-	Cre05.g243950.t1.2	Cre05.g243950.t1.2		1462350,1462067,1461630,1461305,1460982,1460653,1460085,1459171,1457812	1462717,1462209,1461724,1461385,1461024,1460741,1460205,1459451,1458841	
chr5	1451364	1457757	1453104	1457348	-	Cre05.g244000.t1.1	Cre05.g244000.t1.1		1457242,1457017,1456736,1456261,1456037,1455532,1454722,1454411,1451364	1457757,1457137,1456823,1456458,1456128,1455788,1455313,1454532,1454258	
chr5	1435712	1448797	1436528	1448467	-	Cre05.g244050.t1.1	Cre05.g244050.t1.1		1448422,1448120,1447646,1447134,1444958,1444431,1436922,1435712	1448797,1448278,1447765,1447479,1446977,1444766,1444247,1436787	
chr5	1448948	1451339	1449881	1450620	+	Cre05.g244052.t1.1	Cre05.g244052.t1.1		1448948,1449718,1450419	1449485,1450334,1451339	
chr5	1426908	1435709	1427070	1435656	+	Cre05.g244100.t1.1	Cre05.g244100.t1.1		1426908,1427511,1428067,1428900,1430159,1431009,1432440,1432825,1433477,1434738,1435303	1427324,1427640,1428668,1429905,1430830,1432271,1432614,1433213,1434574,1435077,1435709	
chr5	1423752	1426427	1423938	1426321	-	Cre05.g244150.t1.1	Cre05.g244150.t1.1		1424593,1423752	1426427,1424331	
chr5	1415228	1422769	1415300	1422309	+	COTH2	Cre05.g244200.t1.1		1415228,1416574,1417046,1417373,1417617,1418151,1418597,1419163,1419532,1419888,1420272,1420503,1420789,1421121,1421622,1422006	1416232,1416736,1417132,1417429,1417758,1418285,1418742,1419273,1419593,1419945,1420327,1420586,1420843,1421216,1421723,1422769	Similar to bacterial CotH spore protein, found mostly in CFB group bacteria and in a few Chlorophytes; N-terminal domain shows no homolgy
chr5	1411598	1415169	1411684	1414752	+	Cre05.g244236.t1.2	Cre05.g244236.t1.2		1411598,1412039,1412279,1412579,1412943,1413282,1413776,1414299	1411858,1412151,1412340,1412692,1413040,1413398,1413856,1415169	
chr5	1388615	1411497	1389285	1411326	-	DHC6	Cre05.g244250.t1.2		1411285,1411159,1410974,1410160,1409899,1409642,1409444,1408875,1408578,1407798,1407523,1406167,1405732,1405328,1404913,1404305,1403945,1403446,1403209,1402940,1402571,1402092,1401754,1401328,1400771,1400497,1400142,1399627,1399285,1398903,1398365,1398157,1397590,1397156,1396801,1396427,1395717,1395400,1394916,1394525,1394230,1393793,1393377,1392684,1392245,1391908,1391164,1390431,1389868,1388615	1411497,1411213,1411073,1410805,1410006,1409752,1409505,1409268,1408677,1408354,1407646,1407219,1405920,1405555,1405146,1404616,1404139,1403759,1403308,1403044,1402801,1402421,1401920,1401459,1401104,1400610,1400378,1399950,1399451,1399113,1398754,1398225,1397979,1397406,1396999,1396570,1396253,1395552,1395184,1394765,1394375,1394051,1393568,1393162,1392488,1392069,1391724,1390788,1390151,1389612	Flagellar inner arm dynein heavy chain, dynein a.  Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]
chr5	1381528	1388597	1381656	1386875	+	Cre05.g244300.t1.1	Cre05.g244300.t1.1		1381528,1382356,1382855,1384376	1382005,1382453,1384126,1388597	
chr5	1378493	1380848	1379275	1380757	-	Cre05.g244350.t1.2	Cre05.g244350.t1.2		1380687,1380372,1379910,1378493	1380848,1380506,1380187,1379599	
chr5	1376099	1378399	1376560	1378163	+	Cre05.g244400.t1.1	Cre05.g244400.t1.1		1376099,1376757,1377111,1377632,1377896	1376608,1376886,1377318,1377725,1378399	
chr5	1370923	1375808	1371514	1375269	-	Cre05.g244450.t1.1	Cre05.g244450.t1.1		1375251,1374664,1373878,1373482,1373127,1372730,1372396,1372067,1370923	1375808,1374738,1374243,1373619,1373225,1372801,1372451,1372139,1371703	
chr5	1364099	1370693	1364333	1370237	+	Cre05.g244500.t1.2	Cre05.g244500.t1.2		1364099,1364514,1369622,1370042	1364359,1369398,1369873,1370693	null-allele mutant was isolated (PMID 29743196)
chr5	1355889	1361160	1356247	1360404	+	Cre05.g244550.t1.1	Cre05.g244550.t1.1		1355889,1356611,1356876,1357503,1357935,1358340,1358984,1359359,1359967	1356413,1356628,1357129,1357713,1358158,1358368,1359195,1359637,1361160	null-allele mutant was isolated (PMID 29743196)
chr5	1339834	1340988	1340129	1340967	-	Cre05.g244650.t1.1	Cre05.g244650.t1.1		1340283,1339834	1340988,1340153	
chr5	1328963	1333258	1329623	1332862	-	PFH15	Cre05.g244700.t1.1		1332968,1332808,1332417,1332126,1331639,1331328,1331136,1330946,1330543,1330147,1328963	1333258,1332863,1332569,1332202,1331693,1331360,1331173,1331025,1330610,1330213,1329760	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate.  Studied in detail by Keskiaho et al. (27) [PMID: 172223] as v2 C_3612, who named this Cr-P4H-1; there are presumably 2 alternative transcripts for this gene
chr5	1338229	1355813	1338995	1354298	+	Cre05.g244701.t1.1	Cre05.g244701.t1.1		1338229,1339208,1339345,1340290,1341058,1341249,1341718,1342404,1342885,1343571,1344049,1344374,1344742,1345224,1346001,1346458,1347164,1347560,1347966,1348438,1348795,1349275,1349723,1350216,1350773,1351553,1352413,1352833,1353025,1353363	1339062,1339253,1340143,1340975,1341134,1341467,1342176,1342622,1343343,1343789,1344191,1344507,1344953,1345715,1346201,1346790,1347361,1347862,1348058,1348635,1349118,1349475,1350046,1350419,1351090,1351598,1352573,1352880,1353195,1355813	
chr5	1324399	1328960	1324460	1328344	+	Cre05.g244750.t1.1	Cre05.g244750.t1.1		1324399,1324767,1325372,1326038,1326539,1327077,1327459,1327889,1328272	1324586,1325030,1325695,1326329,1326691,1327274,1327601,1327948,1328960	
chr5	1314419	1324280	1314580	1323702	+	Cre05.g244800.t1.2	Cre05.g244800.t1.2		1314419,1314719,1315288,1315719,1316563,1317072,1317550,1317898,1318285,1318671,1319559,1319972,1320509,1321104,1321629,1322057,1322576,1323163,1323642	1314611,1314829,1315400,1315812,1316666,1317161,1317633,1317942,1318348,1318887,1319679,1320058,1320613,1321242,1321730,1322169,1322656,1323330,1324280	Similar to complex I intermediate-associated protein 3; see NUOAF1.  Also resembles NmrA negative transcriptional regulator protein family
chr5	1311423	1314318	1312363	1314167	-	Cre05.g244850.t1.2	Cre05.g244850.t1.2		1314087,1313721,1313407,1312624,1311423	1314318,1313814,1313515,1313246,1312363	involved in nuclear trafficking
chr5	1305170	1310438	1306475	1309969	-	Cre05.g244900.t1.1	Cre05.g244900.t1.1		1309969,1309606,1309224,1308757,1308150,1307838,1307383,1306990,1305170	1310438,1309842,1309258,1308841,1308275,1308002,1307592,1307184,1306604	
chr5	1310539	1311159	1310669	1310838	+	NUOB12	Cre05.g244901.t1.1		1310539	1311159	
chr5	1303089	1305051	1303260	1304455	+	Cre05.g244950.t1.2	Cre05.g244950.t1.2		1303089,1303559,1303956,1304278	1303481,1303766,1304030,1305051	
chr5	1285889	1290630	1285936	1290411	+	Cre05.g245100.t1.1	Cre05.g245100.t1.1		1285889,1286162,1286440,1287002,1287624,1289160,1289673	1285969,1286248,1286629,1287391,1288995,1289412,1290630	
chr5	1290773	1300378	1291164	1300267	-	Cre05.g245101.t1.1	Cre05.g245101.t1.1		1300153,1299750,1297062,1296468,1296012,1295404,1294991,1293814,1292994,1292575,1292174,1291580,1290773	1300378,1299851,1299519,1296992,1296079,1295530,1295118,1293981,1293530,1292646,1292254,1291664,1291295	
chr5	1300441	1302440	1300893	1302204	-	CGL3	Cre05.g245102.t1.1		1301931,1301413,1300441	1302440,1301560,1301003	
chr5	1279589	1285840	1280026	1285283	+	Cre05.g245150.t1.1	Cre05.g245150.t1.1		1279589,1279991,1280265,1280617,1280975,1281835,1282478,1283249,1283742,1283954,1284388,1284711,1285114	1279917,1280045,1280381,1280725,1281257,1281940,1282578,1283353,1283791,1284044,1284427,1284816,1285840	
chr5	3484834	3499968	3485350	3499968	-	Cre05.g245158.t1.1	Cre05.g245158.t1.1		3499798,3499409,3498815,3498427,3497486,3497106,3496681,3495544,3494985,3494625,3493843,3493502,3492580,3491936,3491512,3491062,3490740,3490116,3488274,3487833,3486772,3486474,3486299,3486053,3484834	3499968,3499528,3498864,3498529,3497539,3497174,3496806,3495618,3495118,3494700,3493878,3493555,3492679,3492009,3491592,3491148,3490796,3490229,3488394,3487951,3486872,3486531,3486352,3486112,3485431	
chr5	1199119	1208940	1199157	1208366	+	Cre05.g245350.t1.1	Cre05.g245350.t1.1		1199119,1199493,1199883,1200961,1201701,1202218,1202921,1203673,1204256,1204825,1205362,1205949,1206615,1207120,1207478,1208366	1199408,1199584,1199989,1201143,1201772,1202590,1203048,1203808,1204429,1205039,1205491,1206028,1206699,1207211,1208263,1208940	
chr5	1208947	1230028	1209667	1229067	-	Cre05.g245351.t1.1	Cre05.g245351.t1.1		1229933,1229766,1229554,1229375,1229165,1229064,1228882,1228640,1228366,1228082,1227594,1227109,1226879,1226660,1226448,1226240,1226050,1225741,1225477,1225203,1224888,1224535,1224064,1223720,1223402,1223041,1222846,1222611,1222297,1222140,1221884,1221650,1221424,1221264,1221074,1220480,1220189,1219936,1219721,1219449,1219206,1218844,1218544,1218278,1218023,1217898,1217661,1217450,1217234,1216952,1216758,1216511,1216274,1216033,1215700,1215396,1215171,1214810,1214602,1214323,1214043,1213794,1213427,1213192,1212975,1212760,1212472,1212114,1211872,1211491,1211079,1210796,1210471,1208947	1230028,1229815,1229656,1229450,1229225,1229083,1228963,1228738,1228523,1228238,1227788,1227300,1226926,1226737,1226587,1226321,1226117,1225928,1225660,1225358,1225069,1224705,1224292,1223937,1223513,1223190,1222923,1222695,1222448,1222170,1222014,1221728,1221482,1221329,1221110,1220508,1220296,1220044,1219785,1219538,1219323,1219060,1218670,1218361,1218070,1217942,1217694,1217513,1217283,1217078,1216828,1216599,1216339,1216122,1215782,1215503,1215273,1214949,1214700,1214450,1214125,1213865,1213631,1213259,1213031,1212849,1212606,1212285,1211985,1211678,1211222,1210948,1210596,1210318	
chr5	1230113	1267568	1230182	1266941	-	Cre05.g245352.t1.1	Cre05.g245352.t1.1		1266853,1265995,1265756,1265413,1265191,1264930,1264706,1264504,1264178,1263840,1263405,1263201,1262861,1262635,1262491,1262197,1261603,1261266,1261015,1260790,1260598,1260399,1260110,1259844,1259581,1259371,1259118,1258859,1258490,1258205,1258030,1257754,1257526,1257182,1256864,1256665,1256528,1256307,1256066,1255801,1255368,1255115,1254853,1254671,1254205,1253944,1253626,1253232,1252885,1252646,1251879,1251699,1251484,1251206,1250900,1250527,1250225,1249897,1249670,1249448,1249098,1248780,1248589,1248140,1247835,1247633,1247405,1247183,1246921,1246672,1246436,1246260,1245993,1245741,1245589,1245275,1245016,1244833,1244504,1244179,1243822,1243665,1243410,1243158,1242885,1242670,1242387,1242134,1241942,1241713,1241417,1241161,1240993,1240653,1240454,1240253,1240008,1239758,1239298,1238974,1238718,1238334,1238046,1237715,1237449,1237043,1236611,1236470,1236217,1235961,1235683,1235320,1235055,1234888,1234697,1233852,1233524,1233275,1232340,1232039,1231782,1231622,1231436,1231214,1230556,1230113	1267568,1266018,1265788,1265501,1265244,1264984,1264744,1264514,1264260,1263919,1263668,1263283,1263025,1262690,1262538,1262302,1261800,1261298,1261124,1260896,1260638,1260485,1260247,1259970,1259663,1259500,1259229,1259023,1258685,1258294,1258089,1257864,1257619,1257357,1257017,1256744,1256566,1256419,1256188,1255937,1255522,1255228,1254911,1254734,1254532,1254094,1253803,1253471,1253067,1252774,1252508,1251772,1251555,1251366,1251063,1250682,1250343,1250123,1249766,1249536,1249312,1248978,1248662,1248406,1248016,1247675,1247495,1247257,1247046,1246775,1246515,1246363,1246143,1245850,1245647,1245458,1245166,1244912,1244707,1244307,1244037,1243703,1243520,1243252,1242944,1242776,1242467,1242211,1241983,1241826,1241602,1241309,1241045,1240838,1240491,1240319,1240049,1239876,1239579,1239178,1238864,1238458,1238213,1237910,1237575,1237318,1236915,1236540,1236356,1236086,1235824,1235501,1235081,1234945,1234772,1234001,1233737,1233330,1232438,1232169,1231864,1231686,1231500,1231256,1230708,1230368	null-allele mutant was isolated (PMID 29743196)
chr5	1230113	1267568	1230182	1266941	-	Cre05.g245352.t2.1	Cre05.g245352.t2.1		1266853,1265995,1265756,1265413,1265191,1264930,1264706,1264504,1264178,1263840,1263405,1263201,1262861,1262635,1262491,1262197,1261603,1261015,1260790,1260598,1260399,1260110,1259844,1259581,1259371,1259118,1258859,1258490,1258205,1258030,1257754,1257526,1257182,1256864,1256665,1256528,1256307,1256066,1255801,1255368,1255115,1254853,1254671,1254205,1253944,1253626,1253232,1252885,1252646,1251879,1251699,1251484,1251206,1250900,1250527,1250225,1249897,1249670,1249448,1249098,1248780,1248589,1248140,1247835,1247633,1247405,1247183,1246921,1246672,1246436,1246260,1245993,1245741,1245589,1245275,1245016,1244833,1244504,1244179,1243822,1243665,1243410,1243158,1242885,1242670,1242387,1242134,1241942,1241713,1241417,1241161,1240993,1240653,1240454,1240253,1240008,1239758,1239298,1238974,1238718,1238334,1238046,1237715,1237449,1237043,1236611,1236470,1236217,1235961,1235683,1235320,1235055,1234888,1234697,1233852,1233524,1233275,1232340,1232039,1231782,1231622,1231436,1231214,1230556,1230113	1267568,1266018,1265788,1265501,1265244,1264984,1264744,1264514,1264260,1263919,1263668,1263283,1263025,1262690,1262538,1262302,1261800,1261124,1260896,1260638,1260485,1260247,1259970,1259663,1259500,1259229,1259023,1258685,1258294,1258089,1257864,1257619,1257357,1257017,1256744,1256566,1256419,1256188,1255937,1255522,1255228,1254911,1254734,1254532,1254094,1253803,1253471,1253067,1252774,1252508,1251772,1251555,1251366,1251063,1250682,1250343,1250123,1249766,1249536,1249312,1248978,1248662,1248406,1248016,1247675,1247495,1247257,1247046,1246775,1246515,1246363,1246143,1245850,1245647,1245458,1245166,1244912,1244707,1244307,1244037,1243703,1243520,1243252,1242944,1242776,1242467,1242211,1241983,1241826,1241602,1241309,1241045,1240838,1240491,1240319,1240049,1239876,1239579,1239178,1238864,1238458,1238213,1237910,1237575,1237318,1236915,1236540,1236356,1236086,1235824,1235501,1235081,1234945,1234772,1234001,1233737,1233330,1232438,1232169,1231864,1231686,1231500,1231256,1230708,1230368	null-allele mutant was isolated (PMID 29743196)
chr5	1191011	1194055	1191302	1193967	-	COQ5A	Cre05.g245450.t1.2		1193789,1193416,1192718,1192189,1191966,1191570,1191011	1194055,1193542,1193199,1192345,1192031,1191663,1191404	
chr5	1194156	1198157	1194323	1197417	+	RBL10	Cre05.g245451.t1.1		1194156,1195352,1195794,1196359,1196826,1197293	1195001,1195516,1195947,1196456,1196881,1198157	similar to rhomboid intramembrane serine proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted
chr5	1176686	1191009	1177109	1190257	+	FAP175	Cre05.g245500.t1.1		1176686,1178798,1179285,1179705,1179961,1180565,1181284,1181513,1181806,1182075,1182439,1182787,1183093,1183281,1183564,1183851,1184087,1184523,1184873,1185159,1185409,1185690,1186065,1186263,1186764,1187007,1187254,1187517,1187787,1188006,1188233,1188419,1188649,1188900,1189257,1189526,1189809,1190173	1178519,1179163,1179516,1179798,1180348,1181065,1181370,1181611,1181904,1182287,1182597,1182915,1183191,1183376,1183662,1183949,1184185,1184615,1184971,1185260,1185510,1185785,1186157,1186367,1186862,1187111,1187364,1187618,1187885,1188104,1188328,1188529,1188747,1188998,1189355,1189621,1190003,1191009	Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome as FAP175
chr5	1176686	1191009	1177109	1190257	+	FAP175	Cre05.g245500.t2.1		1176686,1178798,1179285,1179705,1179961,1180565,1181284,1181513,1181806,1182075,1182439,1182790,1183093,1183281,1183564,1183851,1184087,1184523,1184873,1185159,1185409,1185690,1186065,1186263,1186764,1187007,1187254,1187517,1187787,1188006,1188233,1188419,1188649,1188900,1189257,1189526,1189809,1190173	1178519,1179163,1179516,1179798,1180348,1181065,1181370,1181611,1181904,1182287,1182597,1182915,1183191,1183376,1183662,1183949,1184185,1184615,1184971,1185260,1185510,1185785,1186157,1186367,1186862,1187111,1187364,1187618,1187885,1188104,1188328,1188529,1188747,1188998,1189355,1189621,1190003,1191009	Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome as FAP175
chr5	1157506	1174546	1157906	1173852	+	PIK1	Cre05.g245550.t1.1		1157506,1158205,1158564,1159016,1160092,1160760,1161246,1161610,1162147,1162522,1162860,1163235,1163571,1163791,1164768,1165319,1165835,1166589,1167250,1167668,1168197,1168749,1169270,1170163,1170640,1171179,1171720,1172162,1172744,1173116,1173618	1158066,1158263,1158691,1159892,1160583,1161018,1161431,1161935,1162287,1162617,1162919,1163301,1163643,1164407,1164976,1165619,1166102,1166984,1167417,1167870,1168426,1168880,1169494,1170308,1170785,1171342,1171845,1172286,1172891,1173340,1174546	Phosphatidylinositol 4-kinase (PI4K), phosphotransferase
chr5	1123106	1146236	1123550	1145588	+	ANK25	Cre05.g245700.t1.1		1123106,1123665,1124066,1124559,1124927,1125548,1132142,1132961,1133217,1133763,1134518,1134923,1135883,1136389,1137080,1137773,1138260,1138978,1139372,1140326,1141020,1141731,1142226,1142670,1143362,1144076,1144785,1145531	1123592,1123751,1124314,1124714,1125150,1125602,1132832,1133033,1133508,1133861,1134619,1135021,1135981,1136487,1137178,1137871,1138361,1139076,1139470,1140427,1141118,1141829,1142327,1142768,1143463,1144174,1144883,1146236	Protein of unknown function with ankyrin repeats
chr5	1146238	1157025	1146928	1156804	-	FAP104	Cre05.g245701.t1.1		1156756,1156343,1155893,1155356,1154607,1153393,1153017,1152016,1148823,1148552,1148182,1147750,1147415,1146238	1157025,1156474,1156021,1155586,1155080,1154289,1153133,1152704,1149570,1148593,1148253,1147885,1147530,1147078	Flagellar Associated Protein, found in the flagellar proteome
chr5	1151303	1157025	1151981	1156804	-	FAP104	Cre05.g245701.t3.1		1156756,1156343,1155893,1155356,1154607,1153393,1153017,1151303	1157025,1156474,1156021,1155586,1155080,1154289,1153133,1152704	Flagellar Associated Protein, found in the flagellar proteome
chr5	1146238	1151255	1146928	1151150	-	FAP104	Cre05.g245701.t2.1		1151127,1148823,1148552,1148182,1147750,1147415,1146238	1151255,1149570,1148593,1148253,1147885,1147530,1147078	Flagellar Associated Protein, found in the flagellar proteome
chr5	1117359	1120117	1117786	1119150	+	Cre05.g245800.t1.2	Cre05.g245800.t1.2		1117359,1117772,1119150	1117564,1118962,1120117	
chr5	1104716	1113540	1104927	1110672	+	BCA2	Cre05.g245900.t1.2		1104716,1105050,1105208,1105371,1105751,1106432,1106672,1107020,1107486,1108691,1109099,1109545,1110072,1110576	1104969,1105081,1105297,1105428,1105843,1106470,1106827,1107151,1107587,1108738,1109197,1109649,1110170,1113540	putative branched-chain amino acid aminotransferase (BCAT1) (EC:2.6.1.42); similar to rice BCAT (GenBank NP_912527); predicted mitochondrial by Target-P; localization by homology is ambiguous
chr5	1115556	1117148	1115620	1115936	+	Cre05.g245901.t1.1	Cre05.g245901.t1.1		1115556,1115858	1115710,1117148	
chr5	1097574	1104640	1097756	1103630	+	DRP1	Cre05.g245950.t1.1		1097574,1098133,1098635,1099080,1099501,1100325,1100743,1101028,1101335,1101648,1101907,1102238,1102631,1103110,1103450	1097882,1098307,1098775,1099126,1099642,1100455,1100814,1101153,1101446,1101742,1102029,1102355,1102793,1103245,1104640	Similar to Arabidopsis DRP1 group; probably involved in membrane vesicle trafficking
chr5	1094099	1097429	1096061	1097263	-	Cre05.g246000.t1.1	Cre05.g246000.t1.1		1097185,1096689,1096325,1094099	1097429,1096949,1096421,1096150	
chr5	1089966	1094077	1090033	1093904	+	OTU3	Cre05.g246050.t1.1		1089966,1090408,1091000,1091250,1091786,1092097,1092455,1092881	1090126,1090522,1091037,1091378,1091860,1092177,1092565,1094077	Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr5	1089966	1094077	1090033	1093904	+	OTU3	Cre05.g246050.t2.1		1089966,1090408,1091000,1091250,1091786,1092097,1092455,1092881	1090126,1090522,1091037,1091378,1091860,1092177,1092556,1094077	Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr5	1077850	1088935	1079853	1088060	-	Cre05.g246100.t1.2	Cre05.g246100.t1.2		1088506,1087792,1087273,1086690,1086103,1085213,1084823,1084330,1083938,1083688,1083331,1082584,1082055,1081677,1081238,1080703,1080241,1077850	1088935,1088238,1087418,1086871,1086211,1085583,1084979,1084535,1084003,1083777,1083372,1082743,1082217,1081735,1081378,1080884,1080337,1079886	
chr5	1060156	1076757	1060219	1074108	+	CYG13	Cre05.g246150.t1.1		1060156,1060609,1061363,1065594,1068805,1069988,1070213,1070619,1071062,1071719,1072220,1072533	1060454,1060822,1065400,1068350,1069669,1070076,1070357,1070715,1071225,1071862,1072330,1076757	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr5	1054036	1059677	1054243	1058780	+	Cre05.g246200.t1.1	Cre05.g246200.t1.1		1054036,1055326,1055833	1054901,1055584,1059677	
chr5	1047201	1053555	1047824	1052762	-	Cre05.g246250.t1.1	Cre05.g246250.t1.1		1052007,1051647,1047201	1053555,1051835,1051143	
chr5	1042086	1047197	1042407	1046670	+	Cre05.g246300.t1.2	Cre05.g246300.t1.2		1042086,1042679,1043019,1043642,1044663,1045226,1045822,1046408	1042550,1042758,1043463,1044359,1044800,1045383,1045935,1047197	
chr5	1033989	1035443	1034479	1034729	-	Cre05.g246376.t1.1	Cre05.g246376.t1.1		1034870,1033989	1035443,1034779	
chr5	1035650	1041975	1036230	1041648	-	Cre05.g246377.t1.1	Cre05.g246377.t1.1		1041528,1041189,1040674,1039838,1039144,1038700,1038231,1037850,1037152,1036842,1035650	1041975,1041307,1040785,1039888,1039260,1038851,1038300,1037896,1037236,1036994,1036386	Adenosine/AMP deaminase, metal-dependent hydrolase; null-allele passenger mutation was isolated (PMID 29743196)
chr5	1027796	1031373	1028038	1030782	+	Cre05.g246400.t1.2	Cre05.g246400.t1.2		1027796,1028440,1029259,1029687,1030447	1028050,1028928,1029399,1029852,1031373	
chr5	999769	1008834	1000617	1008505	-	LAO3	Cre05.g246550.t1.2		1008451,1008007,1007352,1006940,1006549,1006104,1005594,1005053,1004664,1004265,1003874,1003369,1002819,1002298,1001841,1001380,999769	1008834,1008087,1007563,1007033,1006593,1006238,1005743,1005157,1004743,1004368,1004014,1003448,1002890,1002366,1001895,1001525,1000812	similar to LAO1, L-amino-acid oxidase catalytic subunit; possibly the cytosolic enzyme described in PMID:24178194
chr5	1009505	1015985	1010166	1015922	-	Cre05.g246551.t1.1	Cre05.g246551.t1.1		1014642,1014054,1013057,1011791,1011479,1010927,1009505	1015985,1014161,1013759,1012840,1011619,1011226,1010241	
chr5	1016126	1024477	1016214	1024431	+	Cre05.g246552.t1.1	Cre05.g246552.t1.1		1016126,1017089,1017604,1018009,1018413,1018770,1019156,1019526,1019905,1020438,1020759,1021001,1021484,1022301,1022655,1023089,1023845,1024156,1024394	1016454,1017154,1017706,1018150,1018491,1018865,1019239,1019591,1020003,1020508,1020837,1021081,1021564,1022431,1022715,1023211,1023970,1024271,1024477	May contain additional coding sequence in intronic N-island PMID: 27175017
chr5	1025792	1027747	1025836	1027107	+	Cre05.g246553.t1.1	Cre05.g246553.t1.1		1025792,1026511,1027107	1025839,1026920,1027747	May contain additional coding sequence PMID: 27175017
chr5	1025792	1027747	1025836	1026865	+	Cre05.g246553.t2.1	Cre05.g246553.t2.1		1025792,1026511	1025839,1027747	May contain additional coding sequence PMID: 27175017
chr5	997919	999654	998705	999504	-	Cre05.g246600.t1.2	Cre05.g246600.t1.2		999387,997919	999654,999020	
chr5	994543	997814	996994	997649	-	Cre05.g246650.t1.2	Cre05.g246650.t1.2		997421,994543	997814,997153	
chr5	976969	987294	977530	987029	-	Cre05.g246750.t1.1	Cre05.g246750.t1.1		986748,986435,986148,985196,984277,983723,982991,979698,976969	987294,986480,986181,985311,984885,984022,983133,982677,979402	
chr5	987605	988856	988008	988222	+	Cre05.g246752.t1.1	Cre05.g246752.t1.1		987605	988856	
chr5	988905	994336	989022	993789	+	Cre05.g246753.t1.1	Cre05.g246753.t1.1		988905,990439,991098,991643,992487	989753,990588,991247,991733,994336	May contain additional coding sequence in intronic N-island PMID: 27175017
chr5	971441	974184	972961	973912	-	GUN4	Cre05.g246800.t1.2		973630,971441	974184,973462	Tetrapyrrole-binding protein, chloroplast precursor. In Arabidopsis, GUN4 (Genomes uncoupled 4) is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participates in plastid-to-nucleus signaling by regulating magnesium-protoporphyrin IX synthesis or trafficking.
chr5	968905	970966	969287	970135	+	Cre05.g246850.t1.2	Cre05.g246850.t1.2		968905,969997	969383,970966	
chr5	965799	968580	966553	968395	-	Cre05.g246900.t1.2	Cre05.g246900.t1.2		968176,967700,967325,965799	968580,967777,967384,966691	
chr5	961041	965534	962203	965002	-	Cre05.g246950.t1.1	Cre05.g246950.t1.1		965239,964858,964562,964155,963273,961041	965534,965077,964750,964297,963481,962919	
chr5	941945	961036	942173	960292	+	Cre05.g247000.t1.2	Cre05.g247000.t1.2		941945,942330,943428,943893,944197,945571,946259,946902,947662,947963,948429,949140,949625,949933,950347,950782,951326,951937,952579,953013,953850,954302,956095,956673,957523,958925,959890	942179,943043,943568,943960,945244,945909,946433,947476,947769,948121,948601,949326,949718,950199,950524,951022,951427,952172,952730,953421,953970,955711,956289,957134,958389,959005,961036	
chr5	938829	941084	939957	940894	-	COPT1	Cre05.g247050.t1.2		940421,938829	941084,940210	CTR type copper ion transporter; related to COPT1 of Arabidopsis thaliana and Human high-affinity copper uptake protein [hCTR1; PMID: 165147]; fits the pattern for TM2 and TM3: MxxxM-X13-GxxxG
chr5	931249	938774	931700	938751	-	COTH1	Cre05.g247100.t1.1		938277,937587,937071,936371,936066,935620,934458,934222,933929,933560,933389,932903,932510,931249	938774,937878,937222,936453,936127,935704,934543,934277,934012,933781,933457,933053,932718,931970	Similar to bacterial CotH spore protein, found mostly in CFB group bacteria and in a few Chlorophytes; N-terminal domain shows no homolgy
chr5	928725	931236	928928	930866	+	Cre05.g247150.t1.2	Cre05.g247150.t1.2		928725,929398,930030,930664	929061,929739,930252,931236	
chr5	923865	928566	924202	927146	+	Cre05.g247200.t1.2	Cre05.g247200.t1.2		923865	928566	
chr5	914875	923516	914982	920608	+	Cre05.g247250.t1.1	Cre05.g247250.t1.1		914875,915431,915907	915028,915576,923516	
chr5	907695	914826	907803	914298	+	Cre05.g247300.t1.2	Cre05.g247300.t1.2		907695,908153,908611,909027,911354,912073,912645,913665	907875,908293,908772,909106,911443,912220,912980,914826	
chr5	902456	907594	903614	907295	-	Cre05.g247350.t1.2	Cre05.g247350.t1.2		906983,902456	907594,906818	
chr5	900143	902223	900416	901368	+	RDP4	Cre05.g247400.t1.2		900143,900749,901158	900599,900865,902223	
chr5	889524	899924	889730	898891	+	CGL56	Cre05.g247450.t1.2		889524,889905,890617,891569,892359,893302,893629,894340,894834,895378,895946,896509,896829,897799,898207	889784,889950,890766,891909,892880,893409,893744,894442,894929,895482,896029,896605,896931,897865,899924	Conserved in the green lineage
chr5	883465	889422	884417	889207	-	Cre05.g247500.t1.1	Cre05.g247500.t1.1		889148,888971,888847,888694,888294,886628,886173,883465	889422,889042,888889,888736,888561,888100,886465,885985	
chr5	878283	883376	878449	882785	+	Cre05.g247550.t1.2	Cre05.g247550.t1.2		878283,878976,879280,880028,880682,881110,882078,882614	878565,879069,879425,880116,880791,881156,882207,883376	
chr5	876169	878182	877665	878086	-	UBC2	Cre05.g247600.t1.2		876169	878182	
chr5	860243	876126	860598	875067	+	Cre05.g247650.t1.1	Cre05.g247650.t1.1		860243,861165,861629,862420,864721,865678,866753,868108,868584,868980,871361,871857,872353,873985,874393	860965,861466,862235,864500,865453,866219,867568,868197,868736,870293,871588,872048,873639,874099,876126	
chr5	856133	859045	856199	858348	+	Cre05.g247700.t1.1	Cre05.g247700.t1.1		856133,856367,856554,857191	856272,856455,856905,859045	
chr5	843137	848072	843635	847970	-	Cre05.g247850.t1.1	Cre05.g247850.t1.1		847616,847062,846571,845856,845345,844748,844311,843137	848072,847161,846646,845887,845676,844784,844408,843920	
chr5	848125	855992	848787	855905	-	CEP2	Cre05.g247851.t1.1		855806,855627,855001,854529,854162,853335,851703,851199,850776,850311,849980,849388,848125	855992,855695,855081,854620,854261,853464,851805,851243,850876,850462,850173,849475,849030	Cysteine endopeptidases (EC 3.4.22), C1A family (papain-type); similar to higher plant senescence-associated proteases; contains N-terminal cathepsin propeptide inhibitor domain (I29) and C-terminal granulin (Cys-rich) domain
chr5	837947	842032	838517	841839	-	Cre05.g247900.t1.1	Cre05.g247900.t1.1		841476,840500,837947	842032,841255,840263	
chr5	834253	837923	834619	837026	+	Cre05.g247950.t1.2	Cre05.g247950.t1.2		834253,835208,835937,836497,836906	834698,835407,836128,836529,837923	
chr5	826837	834092	827936	833547	-	CGL29	Cre05.g248000.t1.2		833893,833530,832984,832485,831461,830912,830408,829839,829265,828849,828497,826837	834092,833555,833164,832556,832219,831159,830522,829984,829442,828944,828657,828057	
chr5	816213	826834	816354	826811	+	Cre05.g248050.t1.1	Cre05.g248050.t1.1		816213,816537,816737,817137,817522,818015,818497,821521,822047,822417,822790,823286,823713,824096,824669,825017,825342,825691,826266	816418,816626,816873,817229,817683,818093,821309,821643,822160,822557,822915,823354,823775,824205,824806,825098,825464,826054,826834	
chr5	808763	816164	808899	815652	+	ANK1	Cre05.g248100.t1.2		808763,809369,810299,810567,811925,812320,812892,813217,813502,813973,814444,814822,815243,815577	809004,809469,810389,810649,812006,812403,812992,813259,813637,814108,814504,814959,815323,816164	protein of unknown function with ankyrin repeats
chr5	805568	808652	806595	808464	-	PGA2	Cre05.g248150.t1.2		807663,807097,805568	808652,807309,806694	
chr5	797168	805142	799686	804785	-	Cre05.g248200.t1.1	Cre05.g248200.t1.1		804893,804533,802061,801910,800581,799997,797168	805142,804787,804143,801946,801845,800368,799730	
chr5	789163	796218	789317	794315	+	Cre05.g248250.t1.1	Cre05.g248250.t1.1		789163,789578,789743,790355,791007,791748,792470,793125,793507,793907	789470,789604,789922,790561,791183,791900,792583,793193,793581,796218	
chr5	778191	789052	779730	788853	-	Cre05.g248300.t1.1	Cre05.g248300.t1.1		788706,787733,787312,786987,786206,785475,785146,784814,784446,784111,783064,782339,781717,781193,778191	789052,787819,787382,787072,786330,785606,785211,784928,784537,784206,783160,782424,781842,781273,780627	
chr5	772398	774699	772483	774211	+	CAH4	Cre05.g248400.t1.2		772398,772743,773126,773422,773763,774112	772621,772883,773271,773613,773850,774699	Type beta_CA_cladeC; Mitochondrial carbonic anhydrase. Probably regulated by CCM1 [PMID: 15235119]; Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145], identified in their table as MCA
chr5	775373	778186	775508	777853	+	Cre05.g248401.t1.1	Cre05.g248401.t1.1		775373,776254,777005,777577	776028,776657,777280,778186	
chr5	775373	777314	775508	777296	+	Cre05.g248401.t2.1	Cre05.g248401.t2.1		775373,776254,777005	776028,776657,777314	
chr5	768025	770332	768504	770247	-	CAH5	Cre05.g248450.t1.2		770109,769847,769460,769114,768865,768025	770332,769987,769605,769305,768952,768603	Mitochondrial carbonic anhydrase, also called CA2. Matches exons 5 and 6 of CRU41190 Chlamydomonas reinhardtii carbonic anhydrase precursor (beta-CA2)
chr5	764339	766812	765114	766751	-	TRXO	Cre05.g248500.t1.2		766642,766480,766171,765717,765436,764339	766812,766548,766229,765758,765510,765213	Mitochondrial thioredoxin (by homology), putative N-terminal transit peptide for targeting to mitochondria (Lemaire et al (23) Plant Physiol. Biochem. 41, 513-521; also PMID: 11717467).
chr5	749273	764169	749523	762147	+	Cre05.g248550.t1.1	Cre05.g248550.t1.1		749273,749886,750037,750649,751008,751610,753054,753622,753954,754397,756454,756709,757196,757718,758932,759846,760430,761118,761682,762048	749799,749957,750116,750789,751065,752481,753237,753696,754083,756150,756519,756849,757385,758445,759368,760055,760589,761231,761744,764169	
chr5	746133	748474	746198	747441	+	PCC1	Cre05.g248600.t1.2		746133,746588,746869,747324	746319,746661,746913,748474	
chr5	731171	746002	732943	745764	-	Cre05.g248650.t1.1	Cre05.g248650.t1.1		744648,744122,743421,742529,741996,740313,739608,738908,738508,737713,737426,731171	746002,744273,743592,742663,742082,741479,739760,739354,738608,737997,737471,737026	
chr5	729127	730362	729169	730061	-	Cre05.g248700.t1.2	Cre05.g248700.t1.2		729402,729127	730362,729179	
chr6	2149	5285	2500	5014	-	Cre06.g246958.t1.1	Cre06.g246958.t1.1		4296,3607,2149	5285,3745,2500	
chr6	18581	21121	19055	21038	-	Cre06.g248750.t1.1	Cre06.g248750.t1.1		20804,20575,20253,20001,19525,18581	21121,20613,20350,20142,19864,19447	
chr6	21216	23227	21369	23210	+	Cre06.g248800.t1.2	Cre06.g248800.t1.2		21216,21500,21903,22076,22557,23023	21372,21553,21993,22128,22717,23227	
chr6	23230	28605	23249	28352	-	Cre06.g248850.t1.1	Cre06.g248850.t1.1		28071,27766,27430,26998,26694,26449,25520,24969,24628,24370,23883,23661,23230	28605,27892,27608,27297,26892,26581,26232,25277,24804,24481,24115,23756,23399	
chr6	29745	32915	30043	32880	-	Cre06.g248900.t1.1	Cre06.g248900.t1.1		32877,32754,32577,32316,31069,29745	32915,32809,32685,32438,32178,30904	
chr6	33016	38687	33125	38026	+	Cre06.g248950.t1.1	Cre06.g248950.t1.1		33016,33261,33482,33853,34273,35235,35679,36096,36410,36748,36920,37192	33175,33332,33700,33997,34865,35421,35954,36211,36657,36819,36975,38687	
chr6	41556	44657	41851	43958	+	Cre06.g249050.t1.1	Cre06.g249050.t1.1		41556,42105,42243,42552,42773,43127,43333,43739,43903	41965,42141,42467,42595,42910,43166,43592,43779,44657	
chr6	44706	51857	45466	50885	+	Cre06.g249101.t1.1	Cre06.g249101.t1.1		44706,45056,45419,50230,50885	44963,45178,46160,50652,51857	
chr6	51943	56286	52656	56144	-	MAPKK1	Cre06.g249150.t1.1		56033,55857,55638,55190,54985,54801,54566,54369,54072,53735,53486,53181,52848,51943	56286,55913,55706,55357,55071,54818,54652,54400,54207,53875,53650,53315,52949,52707	MEK1; Dual-Specificity Map Kinase 1; Dual specificity kinase that phosphorylates tyrosine and threonine residues of MAP kinases
chr6	56396	57987	56666	57905	+	ARP4	Cre06.g249200.t1.2		56396,56854,57156,57399,57613	56691,56945,57290,57475,57987	ChromDB ARP3401; similar to the Arabidopsis ARP4 protein which is localized predominantly to the nucleus during interphase; may be involved in chromatin remodeling
chr6	57989	58915	58124	58797	-	RPL7AE	Cre06.g249250.t1.2		58676,58443,58309,57989	58915,58612,58374,58151	Cytosolic 60S large ribosomal subunit protein L7ae
chr6	59016	61457	59057	61014	+	ARP5	Cre06.g249300.t1.2		59016,59142,59581,59965,60200,60384,60646,60910	59067,59308,59733,60033,60260,60458,60777,61457	ChromDB ARP3401; similar to the Arabidopsis ARP4 protein which is localized predominantly to the nucleus during interphase; may be involved in chromatin remodeling
chr6	61516	68982	61667	68664	+	DMC3	Cre06.g249350.t1.1		61516,62016,62407,62645,63356,63801,64150,64385,64593,64846,65468,65727,66175,66997,67358,67651,68049,68469	61799,62258,62478,63079,63691,64007,64242,64432,64731,65315,65584,65981,66866,67197,67508,67730,68178,68982	DNA methylase, C-5 cytosine-specific.  ChromoDB DMT348
chr6	69036	72427	69487	71349	+	Cre06.g249400.t1.1	Cre06.g249400.t1.1		69036,69454,69869,70117,71271	69305,69712,69952,71052,72427	
chr6	74866	75989	75177	75646	+	Cre06.g249450.t1.2	Cre06.g249450.t1.2		74866,75610	75345,75989	
chr6	74866	75989	75177	75646	+	Cre06.g249450.t2.1	Cre06.g249450.t2.1		74866,75610	75336,75989	
chr6	76036	83467	76161	82963	+	DMC7	Cre06.g249500.t1.1		76036,76766,77699,78131,78469,78705,78913,79162,79786,80046,80499,81339,81963,82195,82465,82738	76311,77185,78025,78322,78561,78752,79047,79632,79902,80300,81208,81536,82083,82316,82585,83467	Dnmt1 class (cytosine-5-)DNA methyltransferase, ChromDB DMT343; allelic to the previously published sequence AB18536 at the DMT1 locus [also published as MET1; PMID: 11983892, PMID: 1551455], which was sequenced from strain CC-683, a strain carrying the me1 mutation that results in hypermethylation of chloroplast DNA
chr6	84010	85485	84757	85430	-	Cre06.g249550.t1.1	Cre06.g249550.t1.1		84010	85485	
chr6	85550	87435	85591	86678	-	Cre06.g249555.t1.2	Cre06.g249555.t1.2		87009,85550	87435,86722	
chr6	88445	91905	89561	91545	-	Cre06.g249600.t1.2	Cre06.g249600.t1.2		91703,88445	91905,91571	
chr6	92030	97305	92425	97085	-	CGL55	Cre06.g249650.t1.1		97007,96697,96382,96002,95258,93738,93325,92745,92585,92030	97305,96879,96525,96085,95803,95075,93566,93165,92631,92489	Conserved in the Green Lineage
chr6	92030	97305	92425	97085	-	CGL55	Cre06.g249650.t2.1		97007,96697,96382,96002,95258,93738,93325,92745,92585,92030	97305,96879,96522,96085,95803,95075,93566,93165,92631,92489	Conserved in the Green Lineage
chr6	97355	101175	97490	100837	-	Cre06.g249700.t1.1	Cre06.g249700.t1.1		100046,99735,99523,99163,98796,98531,98231,97355	101175,99801,99582,99360,98878,98662,98294,98078	
chr6	101360	107265	101907	106833	-	Cre06.g249750.t1.1	Cre06.g249750.t1.1		107018,105705,105409,105153,104785,104294,103089,102715,102416,101360	107265,106901,105588,105272,104957,104543,103187,102979,102528,102192	
chr6	107376	110177	107491	109512	+	Cre06.g249800.t1.2	Cre06.g249800.t1.2		107376,107757,108023,108317,108690,109125	107662,107900,108173,108517,108952,110177	
chr6	110256	115037	110286	113100	+	Cre06.g249850.t1.1	Cre06.g249850.t1.1		110256,110420,110703,110967,111806,112262	110353,110490,110795,111556,112099,115037	
chr6	115040	120155	115377	120069	-	FAP75	Cre06.g249900.t1.2		119991,119777,119521,118159,117043,115581,115040	120155,119851,119646,119342,118022,116865,115444	Flagellar Associated Protein containing P-loop, found in the flagellar proteome [PMID: 15998802]; null-allele mutant was isolated (PMID 29743196)
chr6	120296	128052	121122	127848	+	Cre06.g249950.t1.1	Cre06.g249950.t1.1		120296,120721,120892,121103,121515,121880,122129,122443,123670,123990,124369,124714,124964,125274,125566,125715,126573,127050,127512,127738	120499,120780,120949,121244,121697,121955,122186,123508,123816,124059,124466,124831,124984,125408,125577,126367,126656,127329,127590,128052	
chr6	128116	132307	128517	129844	+	Cre06.g250000.t1.2	Cre06.g250000.t1.2		128116,128467,129063,129430	128349,128832,129209,132307	
chr6	132340	135195	132630	134980	-	Cre06.g250050.t1.1	Cre06.g250050.t1.1		134966,134507,134285,133382,132340	135195,134723,134344,134095,133107	
chr6	135260	140425	136586	140066	-	HSP70B	Cre06.g250100.t1.2		139940,139696,139171,138719,138004,135260	140425,139842,139284,138847,138366,137747	HSP70B is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; HSP70B is localized to the chloroplast, there mainly to the stroma, but also to thylakoid and low density membranes; HSP70B is inducible by heat shock and light; it interacts with the GrpE-type nucleotide exchange factor CGE1 in an ATP-sensitive manner; HSP70B also interacts with HSP90C; HSP70B by an unknown mechanism protects PSII from photodamage and improves the repair of photodamaged PSII; with its cochaperone CDJ2, HSP70B interacts with VIPP1 and catalyzes assembly and disassembly of VIPP1 rings, as well as the disassembly of VIPP1 rods; HSP70B constitutes about 0.2% of cellular protein [PMID: 2779571, 8914534, 10368186, 11497999, 11752390, 15635096, 15995001, 16143837]
chr6	140896	144987	141248	144711	+	Cre06.g250150.t1.2	Cre06.g250150.t1.2		140896,143681,144357	141251,143878,144987	
chr6	144405	144987	144405	144711	+	Cre06.g250150.t2.1	Cre06.g250150.t2.1		144405	144987	
chr6	148846	153317	149064	151262	+	SAS1	Cre06.g250200.t1.2		148846,149064,149322,149555,149829,150232,150815,151134	148971,149139,149400,149682,150068,150620,150948,153317	S-Adenosylmethionine (AdoMet) synthetase (SAS1); Methionine Adenosyl-transferase
chr6	153327	157045	153614	156852	-	ATPVC	Cre06.g250250.t1.2		156453,156148,155796,154857,153897,153327	157045,156357,155912,154982,154053,153727	vacuolar ATP synthase subunit C, vacuolar H+ ATPase V1 sector, subunit C
chr6	158006	161057	158102	158949	+	Cre06.g250276.t1.1	Cre06.g250276.t1.1		158006	161057	
chr6	161627	180985	162008	180821	-	DHC1B	Cre06.g250300.t1.2		180749,180570,180337,179979,179748,179151,178859,178615,178300,178062,177788,177471,177170,176810,175735,175390,175112,174566,174315,173776,173358,173130,172742,172361,171894,171618,170793,170442,170128,169200,168526,168196,167763,167288,166833,166451,166053,165680,165355,164049,163672,161627	180985,180650,180420,180218,179882,179618,178975,178720,178514,178187,177937,177676,177305,177061,176646,175566,175267,174964,174443,174192,173605,173262,172975,172615,172207,171776,171495,170629,170246,169942,168971,168385,168083,167623,167099,166684,166313,165910,165513,165211,163906,163493	Homologue of mammalian cytoplasmic dynein 2 heavy chain.  Motor for retrograde intraflagellar transport.  Not an inner arm dynein.  Upregulated upon deflagellation by nearly 8-fold; null-allele mutant was isolated (PMID 29743196)
chr6	183381	185678	183942	185460	-	Cre06.g250350.t1.2	Cre06.g250350.t1.2		185362,185238,184929,184757,184546,184407,184173,183381	185678,185285,185045,184852,184614,184465,184321,184044	
chr6	187156	189915	188703	189819	-	CSB28	Cre06.g250400.t1.2		189171,188942,187156	189915,189052,188826	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr6	191005	193798	191400	192869	+	Cre06.g250450.t1.2	Cre06.g250450.t1.2		191005,191534,191672	191461,191601,193798	
chr6	193845	198180	194012	197593	+	Cre06.g250500.t1.2	Cre06.g250500.t1.2		193845,194110,194688,195138,196205,196730,197204	194045,194230,194785,195263,196484,196939,198180	
chr6	199425	204376	200124	203769	+	Cre06.g250550.t1.2	Cre06.g250550.t1.2		199425,200053,202607,203196	199832,202507,202827,204376	
chr6	225180	227294	225413	227061	-	Cre06.g250567.t1.1	Cre06.g250567.t1.1		227027,226582,226258,226006,225665,225180	227294,226708,226432,226160,225767,225422	
chr6	225319	227294	225413	227061	-	Cre06.g250567.t2.1	Cre06.g250567.t2.1		227027,226582,226258,226006,225665,225319	227294,226708,226432,226160,225767,225422	
chr6	228419	230202	228760	229266	-	Cre06.g250600.t1.1	Cre06.g250600.t1.1		230103,229780,229461,229212,228419	230202,229951,229669,229337,228946	
chr6	230868	238014	231403	237215	-	DRP4A	Cre06.g250650.t1.2		236867,236622,236372,235954,235702,235377,235064,234597,234191,233791,233521,233219,232823,231969,231699,230868	238014,236749,236446,236221,235779,235484,235226,234940,234363,233985,233598,233371,233018,232100,231876,231525	Also named EZY8, an early zygote expressed protein [PMID: 1848763]
chr6	241314	251424	242068	250451	-	Cre06.g250700.t1.1	Cre06.g250700.t1.1		250689,250390,249990,249714,249238,248962,248570,248294,247926,247650,247246,246970,246530,246254,245706,245430,245062,244786,244382,244106,243612,243336,242880,242321,241314	251424,250581,250184,249824,249432,249072,248764,248404,248120,247760,247440,247080,246724,246364,245900,245540,245256,244896,244576,244216,243806,243446,243052,242674,242137	
chr6	241314	251244	242068	250451	-	Cre06.g250700.t2.1	Cre06.g250700.t2.1		250689,250390,249990,249714,249238,248962,248570,248294,247926,247650,247246,246970,246530,246254,245706,245430,245062,244786,244382,244106,243612,243336,242880,242321,241314	251244,250581,250184,249824,249432,249072,248764,248404,248120,247760,247440,247080,246724,246364,245900,245540,245256,244896,244576,244216,243806,243446,243052,242674,242137	
chr6	241314	251244	242068	250451	-	Cre06.g250700.t3.1	Cre06.g250700.t3.1		250689,250390,249990,249714,249238,248962,248570,248294,247926,247650,247246,246970,246530,246254,245706,245430,245062,244786,244382,244106,243612,243336,242880,242321,241314	251244,250581,250184,249824,249432,249072,248764,248404,248120,247760,247440,247080,246724,246364,245900,245540,245256,244896,244576,244216,243806,243446,243046,242674,242137	
chr6	251504	255844	252273	255681	-	Cre06.g250750.t1.2	Cre06.g250750.t1.2		255456,254965,254527,254122,253746,253523,253013,251504	255844,255063,254667,254249,253806,253611,253152,252443	
chr6	255909	258844	256709	258232	-	CRB1	Cre06.g250800.t1.1		258411,257725,257303,255909	258844,258297,257552,257152	RNA-binding protein with three KH domains and a protein-protein interaction domain (WW) at the C-terminus; subunit of the circadian RNA-binding protein CHLAMY 1 [PMID: 15190002]
chr6	255909	258844	256709	258232	-	CRB1	Cre06.g250800.t2.1		258411,257755,257303,255909	258844,258297,257552,257152	RNA-binding protein with three KH domains and a protein-protein interaction domain (WW) at the C-terminus; subunit of the circadian RNA-binding protein CHLAMY 1 [PMID: 15190002]
chr6	258979	269924	260472	269594	-	MSH1	Cre06.g250850.t1.1		269577,269317,269077,268644,268242,267596,267097,266573,266126,265692,265410,264998,264472,263944,263401,262190,261862,261541,261089,258979	269924,269461,269094,268793,268431,267795,267351,266936,266432,265887,265553,265171,264620,264134,263644,263093,261973,261616,261207,260804	
chr6	270023	282404	270574	282271	-	METH	Cre06.g250902.t1.1		282151,282025,281449,279497,279375,278599,277427,276677,275904,274010,273711,273473,273144,272863,272503,272174,271606,271141,270023	282404,282067,281786,281097,279425,279106,278366,276779,276411,275610,273744,273601,273296,273018,272658,272251,271963,271337,270862	Contains three pairs of Homocysteine S-methyltransferase/Pterin binding domains before the B12 binding and activation domains; is expressed in preference to METE when Vitamin B12 is present; May contain additional coding sequence in intronic N-island PMID: 27175017
chr6	286106	288129	286708	288013	-	Cre06.g250950.t1.2	Cre06.g250950.t1.2		287939,287667,287113,286106	288129,287832,287468,286934	
chr6	289489	290774	290009	290319	-	Cre06.g250976.t1.1	Cre06.g250976.t1.1		289489	290774	
chr6	292285	293811	292480	293435	+	Cre06.g251000.t1.2	Cre06.g251000.t1.2		292285	293811	
chr6	294645	301446	294870	300641	+	Cre06.g251050.t1.1	Cre06.g251050.t1.1		294645,295010,295424,295888,297235,297899,298270,298650,299139,299830,300412	294936,295099,295585,296875,297532,298022,298433,298885,299552,300190,301446	
chr6	301495	305198	301601	304651	+	NMT1	Cre06.g251100.t1.2		301495,301691,301845,302019,302336,302595,303125,303561,303885,304266	301622,301756,301918,302067,302388,302823,303274,303659,303961,305198	putative N-myristoyl transferase, partial cds; involved in N-terminal myristoylation of cytosolic proteins
chr6	305345	307111	305546	306551	+	OHP2	Cre06.g251150.t1.2		305345,305685,305908,306089,306474	305606,305809,306000,306168,307111	Homologous to stress induced one-helix proteins of Cyanobacteria and land plants and belonging to high-light inducible protein (HLIP) family (LHCII superfamily); described as Low-CO2 inducible gene revealed by cDNA array analyses (LCI25)
chr6	307515	309873	307749	309318	+	IFT43	Cre06.g251200.t1.2		307515,307842,308009,308766,309159	307770,307925,308419,308909,309873	Component of IFT-A particle; identified by comparative genomics as being present only in organisms having motile cilia; this gene is in the location of Probe 2 used in PMID: 11805055
chr6	309889	317834	310764	317713	-	HKR3	Cre06.g251250.t1.1		317661,317441,316882,316570,315528,314989,313326,311438,309889	317834,317572,317021,316657,316041,315244,314712,313008,311196	contains Histidine kinase and signal receiver domains
chr6	320295	322864	321029	322611	-	SMP6B	Cre06.g251300.t1.2		322566,322388,322034,321742,321337,320295	322864,322486,322111,321781,321456,321052	
chr6	324975	328313	325073	327983	+	Cre06.g251350.t1.1	Cre06.g251350.t1.1		324975,325217,325492,325912,326613,327312,327744	325132,325355,325650,326245,327016,327528,328313	
chr6	328329	336894	329080	336810	-	MME6	Cre06.g251400.t1.2		336557,336139,335199,334203,333674,333168,332522,332200,331495,329809,328329	336894,336281,335468,334352,333757,333339,332634,332250,331632,329931,329437	NADP-dependent malic enzyme, probably mitochondrial based on Target-P prediction
chr6	336959	344444	337543	344324	-	NIC7	Cre06.g251450.t1.1		344144,343849,343355,342705,342297,341901,341458,341078,340674,340158,339552,339217,338867,338470,338028,336959	344444,343994,343490,342791,342494,342029,341558,341159,340777,340421,339711,339285,338977,338599,338144,337725	Putative quinolinate synthetase. This is the NIC7 gene, mutants of which require nicotinamide for growth [PMID: 8647391; partial gene sequence, AY032929]
chr6	344545	348426	344671	347772	+	SPS1	Cre06.g251500.t1.2		344545,344997,345973,346372,346631,346966,347574	344698,345113,346093,346448,346819,347181,348426	most similar to Arabidopsis spermine synthase ACAULIS 5 which transfers the aminopropyl group of decarboxylated S-AdoMet to spermidine, forming spermine (PMID: 12220656); note that spermine has not been found in a survey of Chlamydomonas polyamines (PMID: 15002659); SPS1 is found in the flagellar proteome [PMID: 15998802]
chr6	348449	353904	348700	353463	-	SPP1C	Cre06.g251550.t1.1		353379,353161,352765,352410,352001,351743,351495,351333,351061,350594,350497,350323,350071,349874,349586,349334,348449	353904,353265,352881,352614,352161,351867,351588,351386,351171,350775,350515,350380,350182,349991,349627,349461,349097	SppA, protease IV, signal peptide peptidase, serine endopeptidase of S49 family (ClpP clan)1; expressed only in zygotes; nt sequence corresponds to probe 2 of MT+ locus in Ferris [PMID: 11805055], except for 6 missing nt in second exon (CDS) and a missing nucleotide in 3' UTR at pos 2827961; probably a pseudogene in mt+: the second S49 domain is missing, due to a frameshift (confirmed in probe 6 and genome sequence), and the first one is degenerate; still, a cDNA was isolated from mt+; in the mt- allele, the second domain is translatable, but appears non functional (mutation in catalytic Ser); SppA proteases are considered associated with thylakoid membrane and involved in cleavage of membrane proteins or signal peptide; called SPPA1-3 in Sokolenko (2005) Physiol. Plantarum 123:391-398.
chr6	355855	360366	356040	359521	+	EIF5B2	Cre06.g251600.t1.2		355855,356209,356405,356800,357073,357346,357769,358344,358754,359300	356112,356290,356607,356903,357174,357406,357984,358521,358918,360366	eukaryotic translation initiation factor eIF5-like, eIF2 epsilon-like; probe 7 gene in PMID: 11805055.
chr6	360442	371044	361237	370991	-	PTC1	Cre06.g251650.t1.1		370811,370500,368314,368023,367701,367280,366582,366381,366014,365540,364997,364540,363972,363691,363422,362829,362169,361817,360442	371044,370624,368503,368124,367787,367413,366672,366445,366170,365683,365065,364685,364162,363797,363486,362962,362275,361955,361419	Putative low-affinity phosphate transporter, similar to yeast Pho87, Pho90 & Pho91 transporters involved in activation of the PHO pathway. Contains an N-terminal SPX domain and a C-terminal SLC13 permease domain.
chr6	371180	372074	371625	371953	-	Cre06.g251683.t1.1	Cre06.g251683.t1.1		371180	372074	
chr6	372375	374684	372797	373554	+	Cre06.g251716.t1.1	Cre06.g251716.t1.1		372375	374684	
chr6	377146	378381	377324	377940	+	Cre06.g251750.t1.2	Cre06.g251750.t1.2		377146	378381	
chr6	378558	382795	379475	382535	-	RFC4	Cre06.g251800.t1.2		382506,382336,382142,381644,380905,380276,379836,378558	382795,382414,382221,381821,381058,380423,380004,379637	Homologous to eukaryotic RFC4 (DNA replication factor C complex subunit 4); accessory protein of DNA polymerase
chr6	382917	384704	383188	383736	+	Cre06.g251850.t1.2	Cre06.g251850.t1.2		382917,383605	383261,384704	
chr6	384756	388598	385266	387708	+	ALB3.1	Cre06.g251900.t1.2		384756,385110,385835,386321,386970,387364	384996,385521,386090,386532,387156,388598	One of four proteins related to the Arabidopsis ALBINO3 and yeast OXA1 proteins; located in the chloroplast and involved in the translocation of thylakoid membrane proteins
chr6	388950	395275	389168	395168	-	Cre06.g251951.t1.1	Cre06.g251951.t1.1		395061,394829,394471,394194,393668,393315,392963,392081,391567,391169,390343,388950	395275,394871,394539,394271,393796,393501,393025,392235,391738,391291,390755,389993	
chr6	395376	398388	395425	397882	+	LZTFL1	Cre06.g252000.t1.2		395376,395645,395904,396413,396781,397061,397269,397684	395563,395719,396029,396517,396858,397108,397481,398388	
chr6	398474	400335	399449	400065	-	Cre06.g252050.t1.2	Cre06.g252050.t1.2		399957,398474	400335,399809	
chr6	400400	410785	400992	410641	-	Cre06.g252100.t1.2	Cre06.g252100.t1.2		410528,410082,409479,408625,408309,404128,403539,401947,401549,400400	410785,410349,409864,409123,408535,407773,403823,403176,401728,401286	
chr6	412099	415799	412626	415739	-	Cre06.g252150.t1.2	Cre06.g252150.t1.2		415654,415518,415106,414477,414112,413617,413079,412099	415799,415597,415292,414654,414199,413739,413111,412758	
chr6	415936	420090	416012	419690	+	TOC34	Cre06.g252200.t1.2		415936,416454,416905,417159,417640,417860,418446,418750,419091,419507	416103,416581,416980,417241,417696,417937,418547,418855,419380,420090	
chr6	425700	430195	425998	429942	-	Cre06.g252250.t1.1	Cre06.g252250.t1.1		429897,427264,426936,425700	430195,429685,427159,426574	
chr6	430275	435265	431052	435023	-	PDK1	Cre06.g252300.t1.2		434852,434438,434078,433811,433206,432794,432503,432170,431523,430275	435265,434551,434186,433897,433444,432918,432572,432295,431868,431189	Described in PMID: 118555; independent sequence (of the MT- allele): AF387365; C. incerta sequence: AY781412; closest human homolog is 3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase
chr6	435366	439095	435585	438262	+	CGL70	Cre06.g252350.t1.2		435366,436290,436580,437051,437376,437851	435890,436377,436801,437187,437559,439095	
chr6	435366	439095	435585	438262	+	CGL70	Cre06.g252350.t2.1		435366,435566,436290,436580,437051,437376,437851	435485,435890,436377,436801,437187,437559,439095	
chr6	439123	441165	439630	440987	-	Cre06.g252401.t1.1	Cre06.g252401.t1.1		440987,440571,439930,439123	441165,440695,440391,439790	
chr6	441266	445551	441580	444697	+	Cre06.g252450.t1.1	Cre06.g252450.t1.1		441266,441551,441786,442130,442355,442692,442885,443483,443814,444187,444488	441446,441604,441858,442233,442486,442787,442931,443575,443963,444296,445551	
chr6	448835	453415	449798	453369	-	DLA3	Cre06.g252550.t1.1		453274,453127,452674,452345,451061,450461,448835	453415,453208,453045,452404,451846,450715,450080	Dihydrolipoamide acetyltransferase; E2 component of pyruvate dehydrogenase complex. Independent sequence at AY596299.
chr6	457306	459017	457502	457989	+	Cre06.g252576.t1.1	Cre06.g252576.t1.1		457306	459017	
chr6	460435	465585	460873	465013	+	Cre06.g252600.t1.1	Cre06.g252600.t1.1		460435,461700,462187,462578,462917,463371	461578,461843,462339,462751,462981,465585	
chr6	467531	469745	467876	469645	-	LEU1S	Cre06.g252650.t1.2		469510,469382,469243,469039,468811,468503,468174,467531	469745,469438,469310,469148,468871,468558,468259,467948	isopropylmalate dehydratase (EC 4.2.1.33); small subunit, involved in leucine biosynthesis
chr6	469897	473860	471091	473670	-	Cre06.g252700.t1.2	Cre06.g252700.t1.2		473598,473317,472853,472587,471849,471439,469897	473860,473472,472955,472663,472092,471563,471178	similar to splicing factor 3a, subunit 2 [Genbank AY596301]
chr6	479411	480205	479764	480136	-	Cre06.g252743.t1.2	Cre06.g252743.t1.2		480103,479943,479411	480205,480041,479884	
chr6	480316	484847	481282	484081	+	FUS1	Cre06.g252750.t1.1		480316,480776,480903,481196,481485,481831,482108,482261,482428,482573,482838,483042,483695	480621,480841,481131,481427,481762,482049,482200,482369,482511,482779,482982,483169,484847	Glycoprotein localized to the membrane surface of the plus gamete mating structure; lacking in non-fusing fus1 mutants. The FUS1 gene exists only in the MT+ locus. References: gene cloning - PMID: 8856667; protein localization - PMID: 12808049. Independent sequence: U49864
chr6	491828	501445	492349	501092	-	Cre06.g252800.t1.1	Cre06.g252800.t1.1		501089,500800,500620,498137,497544,497367,497031,495550,495273,494213,493599,491828	501445,500892,500712,498370,497600,497432,497202,495698,495331,494449,493842,493339	null-allele passenger mutation was isolated (PMID 29743196)
chr6	529726	534447	530132	533241	+	Cre06.g252850.t1.2	Cre06.g252850.t1.2		529726,530120,530564,530848,531537,531999,532576,532909	529909,530232,530616,530934,531626,532407,532758,534447	
chr6	529726	534447	530132	533241	+	Cre06.g252850.t2.1	Cre06.g252850.t2.1		529726,530120,530564,530848,531537,531999,532579,532909	529909,530232,530616,530934,531626,532407,532758,534447	
chr6	542495	548575	543181	548409	-	Cre06.g252871.t1.1	Cre06.g252871.t1.1		548026,547622,547184,546801,546463,546241,545902,545019,544863,543854,542495	548575,547937,547374,546951,546651,546354,546092,545724,544926,544746,543181	
chr6	547991	548575	548021	548409	-	Cre06.g252871.t2.1	Cre06.g252871.t2.1		547991	548575	
chr6	548676	557367	548790	556164	+	MTA4A	Cre06.g252892.t1.1		548676,549065,549501,549781,550089,550417,550698,551085,551762,552143,552711,552936,553327,553912,554007,554393,554646,555026,555338,555688,556013	548860,549210,549577,549919,550194,550465,550846,551255,551926,552282,552729,553098,553468,553933,554077,554438,554821,555083,555464,555867,557367	MT+ locus copy of the MTA4 gene; coding region differences suggest this is a pseudogene; reference: Ferris,P.J., Small,L. and Goodenough,U.W.; Genbank entry AY596304; null-allele mutant was isolated (PMID 29743196)
chr6	548676	552747	548790	552711	+	MTA4A	Cre06.g252892.t2.1		548676,549065,549501,549781,550089,550417,550698,551085,551762,552143,552678	548860,549210,549577,549919,550194,550465,550846,551255,551926,552282,552747	MT+ locus copy of the MTA4 gene; coding region differences suggest this is a pseudogene; reference: Ferris,P.J., Small,L. and Goodenough,U.W.; Genbank entry AY596304; null-allele mutant was isolated (PMID 29743196)
chr6	552836	557367	552907	556164	+	MTA4A	Cre06.g252892.t3.1		552836,553327,553912,554007,554393,554646,555026,555338,555688,556013	553098,553468,553933,554077,554438,554821,555083,555464,555867,557367	MT+ locus copy of the MTA4 gene; coding region differences suggest this is a pseudogene; reference: Ferris,P.J., Small,L. and Goodenough,U.W.; Genbank entry AY596304; null-allele mutant was isolated (PMID 29743196)
chr6	557418	559555	558134	559527	-	Cre06.g252913.t1.1	Cre06.g252913.t1.1		559489,559140,557418	559555,559298,558978	
chr6	559654	561075	559863	560245	-	MTA1	Cre06.g253000.t1.1		560564,559654	561075,560260	protein of unknown function; the mRNA is induced in plus gametes; the gene exists only in the MT+ locus [PMID: 11805055]. The gene was originally called A1. Independently sequenced, see AF417571.
chr6	563469	565860	563910	564727	+	MTA3A	Cre06.g253051.t1.1		563469,564571	564240,565860	unknown protein; this duplicate copy of mtA3 is located in the MT+ locus (see PMID: 11805055) . Independently sequenced: AF417571. This gene may be a pseudogene
chr6	572219	573960	573191	573867	+	Cre06.g253102.t1.1	Cre06.g253102.t1.1		572219,573162,573809	572793,573577,573960	
chr6	574007	575448	574335	575159	-	Cre06.g253150.t1.2	Cre06.g253150.t1.2		575117,574007	575448,575046	
chr6	578898	591278	580456	591119	-	PKY1	Cre06.g253200.t1.1		591077,590891,590734,590548,588613,586822,583231,582770,582293,581949,581590,581365,580764,578898	591278,590981,590807,590670,590475,588447,586674,583083,582461,582119,581718,581460,581186,580573	
chr6	600821	604808	601259	604664	-	Cre06.g253250.t1.1	Cre06.g253250.t1.1		604634,604329,603995,603709,602934,602402,601771,600821	604808,604457,604084,603849,603530,602759,602201,601574	
chr6	604855	608798	605353	608662	-	Cre06.g253300.t1.2	Cre06.g253300.t1.2		608631,608363,608217,607922,607723,607429,607202,606870,606655,606366,606006,605747,604855	608798,608450,608249,607985,607749,607533,607331,606943,606725,606471,606041,605781,605549	
chr6	608920	610672	608959	610098	+	GCSH	Cre06.g253350.t1.2		608920,609170,609331,609649,609981	609062,609258,609423,609726,610672	glycine decarboxylase complex, H-protein, glycine cleavage system H protein, mitochondrial (GDC_H). Similar to Arabidopsis At1g32470.1. Linkage to the MT locus [PMID: 11805055. Independent sequence (partial): AF387366; C. incerta EST sequence: DQ122896].
chr6	612243	613188	612270	612794	-	CCDC103	Cre06.g253404.t1.1		613132,612944,612711,612243	613188,613061,612834,612553	forms oligomers; contains two coiled coil domains and a RPAP3_C domain; gene located inside mating type locus; independently sequenced as AAK70875 [see PMID: 11805055]; the 3' UTR of this gene partially overlaps the adjacent gene.
chr6	614419	624480	614648	623187	+	Cre06.g253459.t1.2	Cre06.g253459.t1.2		614419,615015,615331,615644,617774,617941,618178,618531,621472,621924,622419,622729,622974	614779,615136,615432,615804,617821,618008,618376,621109,621636,622212,622579,622807,624480	
chr6	740787	742758	740847	742580	-	Cre06.g253550.t1.2	Cre06.g253550.t1.2		742570,742120,741289,740787	742758,742464,741921,741242	
chr6	743019	745210	743056	744360	+	Cre06.g253566.t1.1	Cre06.g253566.t1.1		743019,743593,743903,744147	743386,743753,743981,745210	
chr6	624529	625402	624597	624874	+	Cre06.g253569.t1.1	Cre06.g253569.t1.1		624529	625402	
chr6	745499	746572	745768	746045	+	Cre06.g253582.t1.1	Cre06.g253582.t1.1		745499	746572	
chr6	748899	756430	749230	753646	+	Cre06.g253600.t1.1	Cre06.g253600.t1.1		748899,750062,750894,751713,752613,752895,753258,753552	749731,750706,751535,752504,752681,753110,753418,756430	
chr6	626049	629483	626815	628413	+	Cre06.g253679.t1.1	Cre06.g253679.t1.1		626049,626789,627647,628408	626222,627316,628295,629483	
chr6	700849	709120	702209	706404	+	EZY2	Cre06.g253750.t1.2		700849,702183,703709,704471,705371,705653,706016,706310	701616,702283,704294,705262,705439,705868,706176,709120	Zygote-specific protein EZY2.  EZY2 is a candidate participant in the uniparental inheritance of chloroplast DNA [PMID: 118555; Genbank entry AF399653]
chr6	700849	705600	702209	705281	+	EZY2	Cre06.g253750.t2.1		700849,702183,703709,704471	701616,702283,704294,705600	Zygote-specific protein EZY2.  EZY2 is a candidate participant in the uniparental inheritance of chloroplast DNA [PMID: 118555; Genbank entry AF399653]
chr6	710740	712874	712414	712682	+	Cre06.g253753.t1.1	Cre06.g253753.t1.1		710740,711494,711653,711992	711424,711551,711692,712874	
chr6	712883	713818	712911	713435	-	Cre06.g253754.t1.1	Cre06.g253754.t1.1		713585,713352,712883	713818,713475,713194	
chr6	715049	725040	715289	723828	+	Cre06.g253755.t1.1	Cre06.g253755.t1.1		715049,715656,715972,716285,718582,718819,719172,722113,722565,723060,723370,723615	715420,715777,716073,716445,718649,719017,721750,722277,722853,723220,723448,725040	
chr6	725099	726043	725238	725515	+	Cre06.g253756.t1.1	Cre06.g253756.t1.1		725099	726043	
chr6	726679	730124	727456	729054	+	Cre06.g253757.t1.1	Cre06.g253757.t1.1		726679,727430,728288,729049	726863,727957,728936,730124	
chr6	730691	733588	731408	733402	-	Cre06.g253758.t1.1	Cre06.g253758.t1.1		733292,732393,732051,730691	733588,732459,732149,731441	
chr6	733199	739420	733512	736579	+	Cre06.g253759.t1.1	Cre06.g253759.t1.1		733199,733827,734646,735546,735828,736191,736485	733557,734468,735437,735614,736043,736351,739420	
chr6	632579	634360	632892	633973	+	Cre06.g253789.t1.1	Cre06.g253789.t1.1		632579,633207,633968	632937,633855,634360	
chr6	682479	690820	683694	688104	+	Cre06.g253800.t1.1	Cre06.g253800.t1.1		682479,683668,684521,685350,686171,687071,687353,687716,688010	683101,684195,685162,685994,686962,687139,687568,687876,690820	
chr6	690823	695158	691300	695124	-	Cre06.g253850.t1.2	Cre06.g253850.t1.2		694148,692596,690823	695158,694039,691300	
chr6	695259	696989	695596	696901	+	Cre06.g253851.t1.1	Cre06.g253851.t1.1		695259,695553,696133,696443,696688	695350,695926,696293,696521,696989	
chr6	697039	699810	697359	698588	+	Cre06.g253852.t1.1	Cre06.g253852.t1.1		697039,698127,698372	697433,698205,699810	
chr6	699859	700800	699996	700273	+	Cre06.g253853.t1.1	Cre06.g253853.t1.1		699859	700800	
chr6	650819	653860	650890	652648	+	Cre06.g253900.t1.2	Cre06.g253900.t1.2		650819,651020,651382,651877,652187,652435	650898,651094,651670,652037,652265,653860	
chr6	653779	654899	654056	654333	+	Cre06.g253901.t1.1	Cre06.g253901.t1.1		653779	654899	
chr6	653919	654899	654056	654333	+	Cre06.g253901.t2.1	Cre06.g253901.t2.1		653919	654899	
chr6	663509	682430	663685	681807	+	Cre06.g253902.t1.1	Cre06.g253902.t1.1		663509,664134,664963,665784,666684,666966,667317,667611,668425,681807	663808,664775,665607,666575,666752,667181,667477,668301,669050,682430	
chr6	668519	669319	668648	668895	+	Cre06.g253903.t1.1	Cre06.g253903.t1.1		668519	669319	
chr6	756433	760318	757831	759989	-	Cre06.g253975.t1.2	Cre06.g253975.t1.2		759013,756433	760318,758904	
chr6	756433	759888	757831	759794	-	Cre06.g253975.t2.1	Cre06.g253975.t2.1		758983,756433	759888,758904	
chr6	760419	763000	760461	761766	+	Cre06.g254002.t1.1	Cre06.g254002.t1.1		760419,760998,761308,761553	760791,761158,761386,763000	
chr6	763049	764018	763175	763452	+	Cre06.g254027.t1.1	Cre06.g254027.t1.1		763049	764018	
chr6	764069	772180	765427	769294	+	Cre06.g254052.t1.1	Cre06.g254052.t1.1		764069,765401,766254,767072,767972,768254,768617,768911,769282	764834,765928,766895,767863,768040,768469,768777,768968,772180	
chr6	772229	779400	773579	777986	+	Cre06.g254077.t1.1	Cre06.g254077.t1.1		772229,773553,774406,775235,776053,776953,777235,777598,777892	772986,774080,775047,775876,776844,777021,777450,777758,779400	
chr6	783585	787098	784279	786645	-	HRP6	Cre06.g254100.t1.1		786830,784892,783585	787098,786684,784656	cell wall protein; contains (hydroxy)proline-rich (HR) domain with (SP)n repeats
chr6	787216	791988	787367	791938	-	UTP1	Cre06.g254150.t1.2		791833,791660,791377,790982,790421,790003,789710,789246,788522,787216	791988,791713,791565,791239,790781,790224,789858,789503,788967,788316	Associates with U3 snoRNA, required for pre-rRNA processing; Conserved 90S pre-ribosomal component essential for endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains WD-40 repeats. Independent cDNA sequence: Genbank AY596303.
chr6	793489	794963	793978	794596	+	PR72	Cre06.g254175.t1.1		793489,794172	793995,794963	
chr6	795093	797988	796215	797479	-	Cre06.g254200.t1.2	Cre06.g254200.t1.2		797299,797023,796693,795093	797988,797173,796799,796563	
chr6	805723	809708	808302	808618	-	Cre06.g254213.t1.1	Cre06.g254213.t1.1		809171,805723	809708,808801	
chr6	810223	811658	810372	811194	-	Cre06.g254224.t1.2	Cre06.g254224.t1.2		811359,810874,810570,810223	811658,811230,810673,810467	
chr6	811819	812408	811949	812190	+	Cre06.g254232.t1.1	Cre06.g254232.t1.1		811819	812408	
chr6	813343	815348	813614	815026	-	Cre06.g254240.t1.1	Cre06.g254240.t1.1		814985,814840,814511,814081,813343	815348,814884,814557,814127,813824	
chr6	819483	821928	819502	821458	-	Cre06.g254250.t1.2	Cre06.g254250.t1.2		821345,820265,819639,819483	821928,821201,820088,819505	
chr6	822563	823588	823112	823497	-	Cre06.g254275.t1.1	Cre06.g254275.t1.1		823310,822563	823588,823168	
chr6	824863	826768	826333	826508	-	Cre06.g254300.t1.2	Cre06.g254300.t1.2		826667,824863	826768,826518	
chr6	826915	829748	827276	829633	-	Cre06.g254350.t1.1	Cre06.g254350.t1.1		829547,829129,828739,828231,827799,826915	829748,829373,828902,828417,827945,827545	
chr6	829967	834586	830050	834124	+	FUM1	Cre06.g254400.t1.1		829967,830258,830709,831036,831266,831608,831924,832316,832757,833081,833349,833605,833957	830146,830431,830819,831119,831391,831713,832125,832524,832875,833203,833469,833736,834586	similarity to class I prokaryotic fumarase; predicted to be mitochondrial
chr6	834592	837598	835384	837404	-	Cre06.g254450.t1.2	Cre06.g254450.t1.2		837347,837194,836938,836490,836013,834592	837598,837223,837032,836672,836273,835655	
chr6	837902	841908	838659	841741	-	Cre06.g254500.t1.1	Cre06.g254500.t1.1		841514,841300,837902	841908,841383,841096	
chr6	842089	843620	842297	842990	+	Cre06.g254550.t1.2	Cre06.g254550.t1.2		842089,842460	842373,843620	
chr6	844471	850090	844505	849341	+	Cre06.g254600.t1.1	Cre06.g254600.t1.1		844471,845697,845914,846269,846704,847171,848038,848550,848901,849260	845410,845769,846096,846562,846928,847776,848355,848681,849083,850090	
chr6	850097	856428	850970	856225	-	Cre06.g254650.t1.2	Cre06.g254650.t1.2		855842,855614,855164,854681,854274,853423,851901,851116,850097	856428,855713,855376,854895,854567,854105,852694,851846,850970	
chr6	856539	859850	856617	859536	+	Cre06.g254700.t1.1	Cre06.g254700.t1.1		856539,856706,856957,857246,857468,857804,858106,858454,858894,859497	856633,856851,857038,857288,857669,857896,858247,858765,859366,859850	
chr6	859859	864708	861475	864497	-	Cre06.g254800.t1.2	Cre06.g254800.t1.2		864374,864209,864052,863463,863015,862659,862168,861884,859859	864708,864257,864140,863597,863222,862829,862260,861942,861739	Nuclear pre-mRNA splicing factor, component of splicing factor 3b
chr6	865737	875368	866292	875181	-	Cre06.g254850.t1.1	Cre06.g254850.t1.1		875124,874876,874502,874229,873731,873437,873012,872429,872018,871767,871309,871000,870496,870324,870100,869790,869521,869102,868889,868668,867989,867649,867103,866600,865737	875368,874986,874652,874307,873951,873590,873237,872660,872244,871874,871596,871122,870782,870378,870164,869877,869580,869260,868957,868751,868351,867794,867413,866905,866447	
chr6	877319	895560	877680	894671	+	Cre06.g254917.t1.1	Cre06.g254917.t1.1		877319,877629,877990,878312,878596,878988,879530,880096,880359,880657,881161,881356,881516,881770,881968,885404,885771,886268,886839,887444,888426,888733,889099,889464,890808,891552,893108,893396,893682,894087	877487,877834,878175,878432,878829,879092,879619,880163,880485,880926,881244,881397,881627,881836,885239,885610,886031,886617,887031,888289,888606,888917,889357,890663,891424,892947,893229,893551,893847,895560	null-allele passenger mutation was isolated (PMID 29743196)
chr6	877319	895680	877680	894671	+	Cre06.g254917.t2.1	Cre06.g254917.t2.1		877319,877629,877990,878312,878596,878988,879530,880096,880359,880657,881161,881356,881516,881770,881968,885404,885771,886268,886839,887444,888426,888733,889099,889464,890808,891552,893108,893396,893682,894087	877487,877834,878175,878432,878829,879092,879619,880163,880485,880926,881244,881397,881627,881836,885239,885610,886031,886617,887031,888289,888606,888917,889357,890663,891424,892947,893229,893551,893847,895680	null-allele passenger mutation was isolated (PMID 29743196)
chr6	898335	908510	899147	908150	-	Cre06.g255050.t1.2	Cre06.g255050.t1.2		908078,907708,907399,907148,906598,905488,904632,903540,898335	908510,907931,907510,907198,906921,906354,905282,904419,899147	
chr6	898335	908510	899147	908150	-	Cre06.g255050.t2.1	Cre06.g255050.t2.1		908078,907708,907399,907148,906598,905488,904632,903603,898335	908510,907931,907510,907198,906921,906354,905282,904419,899147	
chr6	908616	916798	908708	915952	+	Cre06.g255100.t1.1	Cre06.g255100.t1.1		908616,909135,909578,909986,910692,911088,911513,911877,912131,912599,913037,913976,914381,914751,915043,915364	908915,909290,909736,910357,910922,911192,911665,911933,912235,912811,913123,914044,914479,914828,915117,916798	
chr6	917127	918458	917631	918241	-	Cre06.g255150.t1.2	Cre06.g255150.t1.2		917127	918458	
chr6	918579	922849	919263	921331	+	Cre06.g255200.t1.1	Cre06.g255200.t1.1		918579,919139,919690,920414,920923	918859,919405,920113,920612,922849	
chr6	922954	926742	923364	926738	-	Cre06.g255250.t1.1	Cre06.g255250.t1.1		926665,926510,926164,925858,925518,925193,924781,924355,923961,923661,922954	926742,926562,926253,925974,925617,925268,924918,924454,924100,923742,923442	Arg and Ser rich protein; conserved in Viridiplantae and fungi
chr6	926797	929047	927316	928880	-	CGLD28	Cre06.g255300.t1.2		928804,928363,927800,926797	929047,928580,928053,927449	
chr6	929143	932114	929322	931514	+	THI10	Cre06.g255350.t1.2		929143,929740,930003,930495,930797,931138,931472	929478,929853,930206,930557,930957,931231,932114	hydroxyethylthiazole kinase (HMT Kinase, THIM), involved in thiamine biosyntheis. Mutants in this gene (THI10) are thiamine-requiring. Identification of gene: PMID: 8647391; sequence of the C. incerta ortholog at AAV41809.
chr6	932147	937012	932739	936876	-	Cre06.g255400.t1.2	Cre06.g255400.t1.2		936738,936018,935695,935100,934701,933367,933077,932147	937012,936194,935805,935201,934823,933651,933166,932802	
chr6	937146	943474	937181	942166	+	MAT3	Cre06.g255450.t1.1		937146,937428,937662,937969,938301,938577,938891,939481,939976,940738,941086	937340,937591,937821,938090,938422,938756,939318,939852,940600,940955,943474	Retinoblastoma (RB) tumor suppressor related protein [PMID: 11445540; Genbank entry AF375824]
chr6	943477	947712	943628	947322	-	Cre06.g255500.t1.2	Cre06.g255500.t1.2		947196,946643,945969,945425,944694,944394,943477	947712,947050,946345,945671,945215,944527,944208	
chr6	947967	952402	948800	951192	-	Cre06.g255550.t1.1	Cre06.g255550.t1.1		951610,950802,950582,949661,948943,947967	952402,951286,950677,950397,949544,948800	
chr6	947967	952402	948797	951192	-	Cre06.g255550.t2.1	Cre06.g255550.t2.1		951610,950802,950582,949661,948943,947967	952402,951286,950677,950397,949544,948797	
chr6	954072	958092	954750	957469	-	EZY1A	Cre06.g255600.t1.1		957463,956809,956632,956316,955214,954072	958092,957081,956694,956402,955963,954984	Unknown protein, zygote-specific, originally called Class III, member of a tandemly repeated gene family [PMID: 3614194]; localizes to chloroplast nucleoids, expression is suppressed after UV treatment of plus gametes, postulated involvement in uniparental inheritance of chloroplast DNA [PMID: 8374951]. EZY1 transcripts are not detected in cells expressing GSP1 ectopically [PMID: 11641281]. Genbank entry L20945.
chr6	958157	961212	960486	960848	-	Cre06.g255626.t1.1	Cre06.g255626.t1.1		960660,958157	961212,960499	
chr6	961261	965302	962377	965100	-	EZY1B	Cre06.g255650.t1.1		965085,964439,964255,963947,962841,961261	965302,964711,964317,964033,963590,962611	Unknown protein, zygote-specific, originally called Class III, member of a tandemly repeated gene family [PMID: 3614194]; localizes to chloroplast nucleoids, expression is suppressed after UV treatment of plus gametes, postulated involvement in uniparental inheritance of chloroplast DNA [PMID: 8374951]. EZY1 transcripts are not detected in cells expressing GSP1 ectopically [PMID: 11641281]. Genbank entry L20945.
chr6	972337	977092	973276	976373	-	Cre06.g255700.t1.1	Cre06.g255700.t1.1		975637,974983,974630,974368,972337	977092,975514,974770,974446,974185	
chr6	978280	981812	978830	981557	-	EZY1C	Cre06.g255750.t1.1		981542,980897,980713,980405,979294,978280	981812,981169,980775,980491,980052,979064	Unknown protein, zygote-specific, originally called Class III, member of a tandemly repeated gene family [PMID: 3614194]; localizes to chloroplast nucleoids, expression is suppressed after UV treatment of plus gametes, postulated involvement in uniparental inheritance of chloroplast DNA [PMID: 8374951]. EZY1 transcripts are not detected in cells expressing GSP1 ectopically [PMID: 11641281]. Genbank entry L20945.
chr6	981907	986602	982840	986008	-	Cre06.g255800.t1.1	Cre06.g255800.t1.1		986216,984548,984195,983920,981907	986602,986110,984335,983998,983749	
chr6	995823	1001194	996014	1000794	+	Cre06.g255850.t1.2	Cre06.g255850.t1.2		995823,996476,996917,997097,997493,997961,998309,998698,999035,999306,999599	996360,996781,997003,997269,997669,998146,998527,998938,999107,999437,1001194	
chr6	1001238	1003292	1002065	1002956	-	Cre06.g255900.t1.2	Cre06.g255900.t1.2		1002890,1001238	1003292,1002665	
chr6	1003632	1008062	1004005	1007916	-	Cre06.g255950.t1.1	Cre06.g255950.t1.1		1007862,1007631,1006994,1006626,1005984,1005464,1004765,1003632	1008062,1007738,1007366,1006736,1006312,1005756,1005230,1004215	
chr6	1008166	1014675	1008331	1014375	+	Cre06.g256000.t1.2	Cre06.g256000.t1.2		1008166,1009506,1009775,1010215,1010604,1011044,1011312,1011985,1012336,1012579,1013212,1013460,1014313	1009339,1009571,1010006,1010379,1010839,1011131,1011730,1012055,1012415,1013071,1013286,1014046,1014675	
chr6	1014726	1018529	1015025	1017771	+	Cre06.g256050.t1.1	Cre06.g256050.t1.1		1014726,1015171,1015374,1015548,1015801,1016132,1016317,1016679,1016846,1017135,1017533	1015100,1015257,1015445,1015634,1015892,1016171,1016494,1016710,1016983,1017394,1018529	
chr6	1018576	1022607	1018895	1021850	+	Cre06.g256100.t1.1	Cre06.g256100.t1.1		1018576,1019010,1019170,1019411,1019694,1020024,1020242,1020765,1020945,1021224,1021762	1018916,1019078,1019250,1019503,1019803,1020063,1020419,1020796,1021085,1021603,1022607	
chr6	1022796	1026460	1022994	1025694	+	Cre06.g256150.t1.2	Cre06.g256150.t1.2		1022796,1023355,1023562,1023804,1024168,1024455,1024599,1025028,1025199	1023060,1023435,1023642,1023899,1024238,1024494,1024773,1025059,1026460	
chr6	1026538	1029625	1026776	1029523	-	HAT3	Cre06.g256200.t1.2		1029133,1027899,1026538	1029625,1028775,1027063	ChromDB HAG342. GNAT superfamily histone acetyltransferase member; GCN5-related N-acetyltransferase.  Contains bromodomain
chr6	1029735	1031415	1029775	1030831	+	TEF14	Cre06.g256250.t1.2		1029735,1030400	1029935,1031415	Putative chloroplast thylakoid lumen protein conserved in Viridiplantae (see GI:7388292); present in thylakoid proteome [PMID: 17078018]. The restriction fragment used as Probe 99 in PMID: 11805055 overlaps this gene and the adjacent acetyltransferase. This gene matches the size of the mRNA (
chr6	1032986	1038227	1033238	1036895	+	Cre06.g256300.t1.2	Cre06.g256300.t1.2		1032986,1033581,1034333,1034693,1035303,1035806,1036221,1036580,1036857	1033403,1033756,1034468,1034809,1035432,1035949,1036393,1036622,1038227	
chr6	1032986	1038227	1033238	1036895	+	Cre06.g256300.t2.1	Cre06.g256300.t2.1		1032986,1033581,1034333,1034693,1035303,1035806,1036221,1036580,1036857	1033403,1033756,1034468,1034791,1035432,1035949,1036393,1036622,1038227	
chr6	1038780	1045275	1039162	1044617	-	Cre06.g256350.t1.2	Cre06.g256350.t1.2		1044446,1043678,1043252,1042943,1042699,1042419,1042023,1041753,1041479,1041176,1040879,1040559,1040374,1040066,1039743,1039457,1038780	1045275,1043800,1043419,1042981,1042756,1042439,1042203,1041840,1041540,1041321,1040961,1040647,1040451,1040186,1039776,1039603,1039236	
chr6	1045640	1051395	1047215	1051062	-	Cre06.g256400.t1.1	Cre06.g256400.t1.1		1050918,1050604,1050182,1049175,1048656,1048177,1045640	1051395,1050711,1050334,1049508,1048764,1048259,1047838	
chr6	1051500	1058215	1051985	1057875	-	Cre06.g256420.t1.2	Cre06.g256420.t1.2		1057797,1057289,1056811,1056439,1056130,1055710,1055309,1054679,1054332,1054000,1052755,1051500	1058215,1057444,1056972,1056538,1056263,1055847,1055440,1054921,1054433,1054093,1053692,1052528	
chr6	1058346	1060967	1058591	1060295	+	FAP119	Cre06.g256450.t1.2		1058346,1058721,1059468,1059774,1060091	1058594,1059163,1059603,1059908,1060967	also known as C1a-34; form the C1a projection, with PF6, C1a-86, C1a-32, C1a-18, and calmodulin;  similar to C1a-32; may play a role in modulating both inner and outer dynein arm activity; pI shift in DRC mutants (PubMed ID:21700706 Lin et al. Nicastro 2011)
chr6	1061180	1065785	1061640	1065652	-	Cre06.g256500.t1.2	Cre06.g256500.t1.2		1065145,1064683,1064218,1063722,1063421,1063107,1062805,1062594,1062312,1062125,1061806,1061180	1065785,1064975,1064348,1064033,1063547,1063239,1063005,1062714,1062479,1062209,1061962,1061733	
chr6	1061180	1064355	1061640	1064270	-	Cre06.g256500.t2.1	Cre06.g256500.t2.1		1064218,1063722,1063421,1063107,1062805,1062594,1062312,1062125,1061806,1061180	1064355,1064033,1063547,1063239,1063005,1062714,1062479,1062209,1061962,1061733	
chr6	1065840	1067945	1066248	1067846	-	Cre06.g256526.t1.1	Cre06.g256526.t1.1		1066624,1065840	1067945,1066248	
chr6	1068046	1071557	1068191	1070814	+	Cre06.g256550.t1.1	Cre06.g256550.t1.1		1068046,1068453,1070655	1068216,1070341,1071557	
chr6	1071606	1080067	1071817	1078217	+	Cre06.g256600.t1.2	Cre06.g256600.t1.2		1071606,1072456,1074435,1075097	1071877,1074285,1074929,1080067	
chr6	1080296	1093190	1080618	1092622	+	Cre06.g256650.t1.1	Cre06.g256650.t1.1		1080296,1080762,1081699,1082128,1082478,1082834,1083242,1083524,1083803,1084068,1084292,1084643,1084902,1085273,1085672,1085997,1086188,1086422,1086763,1086940,1087189,1087597,1088067,1088326,1088539,1088857,1089180,1089617,1090079,1090568,1090813,1091175,1091441,1091690,1092000,1092251,1092517	1080654,1081547,1081803,1082356,1082704,1083115,1083365,1083647,1083893,1084145,1084504,1084813,1085138,1085400,1085716,1086059,1086277,1086619,1086812,1087079,1087427,1087800,1088154,1088416,1088708,1089030,1089273,1089918,1090315,1090677,1091066,1091287,1091520,1091801,1092112,1092371,1093190	
chr6	1080296	1093190	1080618	1092622	+	Cre06.g256650.t2.1	Cre06.g256650.t2.1		1080296,1080762,1081699,1082128,1082478,1082834,1083242,1083524,1083803,1084068,1084295,1084643,1084902,1085273,1085672,1085997,1086188,1086422,1086763,1086940,1087189,1087597,1088067,1088326,1088539,1088857,1089180,1089617,1090079,1090568,1090813,1091175,1091441,1091690,1092000,1092251,1092517	1080654,1081547,1081803,1082356,1082704,1083115,1083365,1083647,1083893,1084145,1084504,1084813,1085138,1085400,1085716,1086059,1086277,1086619,1086812,1087079,1087427,1087800,1088154,1088416,1088708,1089030,1089273,1089918,1090315,1090677,1091066,1091287,1091520,1091801,1092112,1092371,1093190	
chr6	1093200	1106615	1094243	1106340	-	Cre06.g256700.t1.1	Cre06.g256700.t1.1		1106304,1105420,1105155,1104612,1104264,1103835,1103583,1103301,1103055,1102862,1102508,1102199,1101868,1101606,1101296,1101029,1100811,1100469,1100276,1100009,1099664,1099290,1098940,1098686,1098394,1098072,1097825,1096929,1096540,1096177,1095788,1095574,1095342,1095061,1094753,1094494,1093200	1106615,1106229,1105268,1104840,1104490,1104125,1103706,1103424,1103145,1102939,1102720,1102369,1102101,1101733,1101340,1101091,1100900,1100666,1100325,1100148,1099899,1099493,1099027,1098776,1098563,1098245,1097918,1097434,1096776,1096286,1096041,1095686,1095421,1095172,1094865,1094614,1094348	null-allele mutant was isolated (PMID 29743196)
chr6	1107416	1112107	1107534	1111053	+	FAT1	Cre06.g256750.t1.2		1107416,1108152,1108791,1109390,1109729,1110271,1110756	1107888,1108282,1108904,1109485,1109789,1110405,1112107	acyl carrier protein thioesterase, putative; pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE). These enzymes terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.
chr6	1113266	1115907	1113506	1115085	+	SND1A	Cre06.g256800.t1.1		1113266,1113947,1114151,1114538,1115038	1113671,1113985,1114321,1114664,1115907	contains divergent SAND domain
chr6	1113266	1115907	1113506	1115085	+	SND1A	Cre06.g256800.t2.1		1113266,1113950,1114151,1114538,1115038	1113671,1113985,1114321,1114664,1115907	contains divergent SAND domain
chr6	1116206	1119317	1116449	1118463	+	SND1B	Cre06.g256850.t1.1		1116206,1117258,1117403,1117925,1118398	1116623,1117293,1117573,1118051,1119317	contains divergent SAND domain
chr6	1116206	1119317	1116761	1118463	+	SND1B	Cre06.g256850.t2.1		1116206,1117258,1117403,1117925,1118398	1116803,1117293,1117573,1118051,1119317	contains divergent SAND domain
chr6	1119366	1122637	1119839	1121975	+	SND1C	Cre06.g256900.t1.1		1119366,1120615,1120760,1121271,1121889	1120013,1120650,1120930,1121397,1122637	contains divergent SAND domain
chr6	1127346	1128847	1127382	1128075	+	SND1D	Cre06.g256950.t1.2		1127346,1127545,1128010	1127439,1127671,1128847	contains divergent SAND domain
chr6	1131126	1135297	1131386	1134590	+	SULP3	Cre06.g257000.t1.2		1131126,1131631,1132596,1133033,1133375,1133718,1134092,1134449	1131529,1132045,1132760,1133124,1133516,1133849,1134265,1135297	chloroplast ABC-type sulfate transporter; NCBI accessions AAS20264 (protein) and AY536253 (mRNA); PMID: 15278455
chr6	1135446	1143588	1136130	1141599	+	GBS2	Cre06.g257050.t1.1		1135446,1135788,1136118,1137266,1137906	1135673,1135879,1137093,1137703,1143588	Putative granule bound starch synthase; GBSS-like protein; catalyses the transfer of a glucosyl moiety of the ADP-glc to the non-reducing end of a pre-existing alpha 1-4 linked chain. This sequence matches strongly the GBSSI sequences from higher plant. But it is highly different from the Chlamydomonas GBSSI (STA2 gene), and there is no C-terminal extension.
chr6	1143819	1147865	1144209	1147575	-	Cre06.g257100.t1.1	Cre06.g257100.t1.1		1147695,1147354,1146769,1146384,1145749,1145377,1145087,1144610,1143819	1147865,1147623,1147102,1146554,1146199,1145572,1145222,1144759,1144398	
chr6	1148356	1150746	1148618	1150707	+	RPL37A	Cre06.g257150.t1.2		1148356,1148713,1149498,1150643	1148621,1148841,1149580,1150746	Cytosolic 60S large ribosomal subunit protein L37a
chr6	1150750	1151215	1150809	1150975	-	Cre06.g257167.t1.1	Cre06.g257167.t1.1		1150750	1151215	
chr6	1152016	1153751	1152310	1152479	+	Cre06.g257183.t1.1	Cre06.g257183.t1.1		1152016	1153751	
chr6	1154726	1160915	1157243	1160632	-	Cre06.g257200.t1.1	Cre06.g257200.t1.1		1160624,1160235,1159637,1159237,1154726	1160915,1160394,1160086,1159440,1159094	
chr6	1161130	1168797	1161807	1168672	-	BBS2	Cre06.g257250.t1.1		1168638,1168183,1167623,1167278,1166751,1166102,1165565,1164794,1164480,1164035,1163810,1163386,1162856,1162339,1161130	1168797,1168547,1167727,1167429,1166862,1166236,1165738,1164988,1164533,1164165,1163867,1163490,1162993,1162496,1162018	Flagellar protein, component of the core BBSome complex that targets membrane proteins to cilia
chr6	1169447	1172845	1169856	1172446	+	Cre06.g257300.t1.1	Cre06.g257300.t1.1		1169447,1169842	1169568,1172845	
chr6	1173236	1176126	1173350	1175479	+	Cre06.g257351.t1.1	Cre06.g257351.t1.1		1173236,1173650,1173923,1174422,1174726,1175479	1173554,1173776,1174218,1174529,1175315,1176126	
chr6	1176186	1183267	1176507	1181005	+	Cre06.g257400.t1.2	Cre06.g257400.t1.2		1176186,1176706,1178589,1179088,1179774,1180074	1176561,1178464,1178949,1179638,1179864,1183267	
chr6	1183328	1185215	1183689	1184875	-	ATPVL1	Cre06.g257450.t1.2		1184772,1184417,1184228,1184073,1183328	1185215,1184575,1184348,1184158,1183751	vacuolar H(+)-ATPase V0 sector, c/c' subunits, vacuolar ATP synthase 16 kDa proteolipid subunit
chr6	1187893	1188774	1187991	1188196	+	Cre06.g257476.t1.1	Cre06.g257476.t1.1		1187893	1188774	
chr6	1188823	1190696	1189383	1190218	+	FTT2	Cre06.g257500.t1.2		1188823,1189995	1189904,1190696	Fourteen-three-three (FTT) protein, homolog of Vigna angularis accession BAB47119. Found in the flagellar proteome [PMID: 15998802], same as centriole protein POC8 [PMID: 15964273]. In addition to its presence in the flagellar and centriole proteomes, this protein was also found in the mitochondrial proteome (soluble fraction) [PMID: 16452484]; in this study, one of the peptides contained the N-terminus (with initiator Met removed), suggesting either import without an mTP, or association with the surface of the organelle
chr6	1190707	1194962	1191193	1194815	-	UCP2	Cre06.g257550.t1.2		1194658,1194412,1194145,1193676,1193241,1192982,1191947,1190707	1194962,1194479,1194238,1194010,1193427,1193058,1192773,1191193	Belong to mitochondrial substrate carrier family; null-allele mutant was isolated (PMID 29743196)
chr6	1195083	1204564	1195258	1204440	+	FA1	Cre06.g257600.t1.1		1195083,1195604,1195909,1196179,1197084,1197300,1197706,1197960,1198295,1198509,1198809,1198940,1199297,1199793,1200047,1200323,1200940,1201518,1201864,1202227,1202518,1202792,1203225,1203855	1195411,1195712,1196003,1196898,1197128,1197488,1197816,1198169,1198363,1198699,1198852,1199129,1199528,1199899,1200191,1200788,1201379,1201679,1202034,1202370,1202643,1203061,1203602,1204564	Flagellar autotomy protein, required for pH-induced excision of flagella (gi:7671199); PMID: 18617
chr6	1195083	1204564	1195258	1204440	+	FA1	Cre06.g257600.t2.1		1195083,1195604,1195912,1196179,1197084,1197300,1197706,1197960,1198295,1198509,1198809,1198940,1199297,1199793,1200047,1200323,1200940,1201518,1201864,1202227,1202518,1202792,1203225,1203855	1195411,1195712,1196003,1196898,1197128,1197488,1197816,1198169,1198363,1198699,1198852,1199129,1199528,1199899,1200191,1200788,1201379,1201679,1202034,1202370,1202643,1203061,1203602,1204564	Flagellar autotomy protein, required for pH-induced excision of flagella (gi:7671199); PMID: 18617
chr6	1208195	1210042	1208203	1209438	+	PRX1	Cre06.g257601.t1.2		1208195,1208688,1209120	1208581,1208699,1210042	thioredoxin dependent peroxidase, chloroplast precursor, PMID: 11784321. Protein processed at aa 39 to produce N-terminus of SHAEKPL as determined by Edman degradation
chr6	1204577	1208072	1205078	1207911	-	MSRA2	Cre06.g257650.t1.2		1207695,1207428,1207076,1206876,1206603,1206293,1206138,1205842,1205375,1204577	1208072,1207526,1207223,1206937,1206665,1206322,1206191,1205958,1205536,1205135	catalyzes the thioredoxin-dependent reduction of L-methionine (S)-S-oxide in oxidized proteins
chr6	1210383	1226654	1210691	1226339	+	Cre06.g257700.t1.1	Cre06.g257700.t1.1		1210383,1211154,1211419,1211782,1212079,1212392,1212775,1213034,1213259,1213487,1213863,1214057,1214195,1214458,1214669,1214893,1215153,1215394,1215699,1215946,1216352,1216632,1217201,1217445,1217916,1218108,1218449,1218686,1218913,1219159,1219566,1219761,1220234,1220485,1220778,1220992,1221366,1221767,1222163,1222413,1222887,1223181,1223422,1223632,1223924,1224185,1225130,1225681,1225953,1226231	1211062,1211265,1211622,1211946,1212246,1212619,1212909,1213138,1213351,1213711,1213949,1214107,1214281,1214523,1214794,1214994,1215260,1215570,1215842,1216251,1216531,1217087,1217320,1217792,1218008,1218311,1218547,1218781,1218997,1219424,1219646,1220121,1220331,1220640,1220864,1221231,1221632,1222033,1222290,1222745,1223040,1223302,1223542,1223778,1224012,1225012,1225469,1225797,1226105,1226654	
chr6	1226893	1230664	1227230	1230559	+	Cre06.g257750.t1.1	Cre06.g257750.t1.1		1226893,1227649,1228415,1228741	1227429,1228116,1228611,1230664	
chr6	1230713	1239412	1231480	1239139	-	POL1-1	Cre06.g257800.t1.1		1238873,1237535,1237262,1236382,1236101,1235610,1235282,1234923,1234597,1234238,1233821,1233568,1233376,1233170,1232818,1232519,1232402,1231999,1231703,1230713	1239412,1238597,1237372,1237002,1236221,1235803,1235377,1235076,1234682,1234462,1234077,1233659,1233436,1233203,1232903,1232636,1232422,1232250,1231837,1231531	Homologous to E. coli PolI-like DNA polymerase; POLA family DNA polymerase; probably functions in mitochondria and/or chloroplast.
chr6	1239471	1243211	1240180	1243011	-	Cre06.g257850.t1.2	Cre06.g257850.t1.2		1242941,1242727,1242540,1242364,1242075,1241530,1240982,1240513,1239471	1243211,1242881,1242648,1242467,1242179,1241713,1241150,1240612,1240309	
chr6	1243267	1246722	1243939	1246593	-	Cre06.g257900.t1.1	Cre06.g257900.t1.1		1246490,1246311,1245909,1245561,1245193,1244780,1244491,1243267	1246722,1246382,1246168,1245669,1245347,1244878,1244619,1244329	
chr6	1247373	1253425	1247601	1251997	+	AST4	Cre06.g257950.t1.2		1247373,1247879,1248265,1248953,1249533,1250078,1250420,1250902,1251221,1251549,1251846	1247733,1247956,1248351,1249110,1249686,1250221,1250574,1251031,1251283,1251610,1253425	Putative aspartate aminotransferase (EC 2.6.1.1); weak Target-P prediction of mitochondrial targeting; homology also predicts mitochondrial location; found in the mitochondrial proteomic survey.
chr6	1253427	1255801	1253614	1255539	-	Cre06.g258000.t1.2	Cre06.g258000.t1.2		1255368,1255135,1254791,1254341,1253948,1253427	1255801,1255206,1254928,1254596,1254201,1253677	
chr6	1256013	1258462	1256484	1258282	-	NCL2	Cre06.g258051.t1.1		1257760,1256013	1258462,1257678	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; a pseudogene in many laboratory and wild strains
chr6	1259787	1265872	1262076	1265452	-	Cre06.g258100.t1.1	Cre06.g258100.t1.1		1265622,1263127,1262507,1262276,1259787	1265872,1265455,1262921,1262343,1262139	
chr6	1265990	1267872	1266278	1267620	-	Cre06.g258150.t1.1	Cre06.g258150.t1.1		1266902,1265990	1267872,1266403	
chr6	1268213	1278093	1268359	1278001	+	Cre06.g258200.t1.1	Cre06.g258200.t1.1		1268213,1268797,1269072,1269471,1269763,1270547,1270921,1271224,1271706,1272260,1272527,1276325,1276934	1268560,1268867,1269251,1269617,1270272,1270724,1270979,1271320,1271822,1272347,1275951,1276727,1278093	
chr6	1278153	1284475	1278240	1283667	+	Cre06.g258226.t1.1	Cre06.g258226.t1.1		1278153,1278733,1278950,1279497,1279767,1280206,1280665,1280885,1281202,1281723,1281976,1282322,1282641,1283016,1283376	1278478,1278776,1279071,1279548,1279919,1280280,1280777,1280971,1281310,1281792,1282071,1282380,1282829,1283057,1284475	
chr6	1284504	1289762	1285749	1289036	-	Cre06.g258250.t1.1	Cre06.g258250.t1.1		1288805,1288681,1288329,1287851,1287507,1287287,1287005,1286568,1286234,1284504	1289762,1288716,1288550,1288123,1287649,1287365,1287084,1286802,1286308,1285995	
chr6	1289811	1294442	1290648	1294211	-	Cre06.g258300.t1.1	Cre06.g258300.t1.1		1294193,1294082,1293561,1293256,1293006,1292590,1292245,1291965,1291496,1291072,1289811	1294442,1294117,1293785,1293346,1293166,1292732,1292323,1292044,1291739,1291149,1290870	
chr6	1294497	1298802	1295311	1298740	-	Cre06.g258350.t1.1	Cre06.g258350.t1.1		1297923,1297578,1294497	1298802,1297759,1297384	
chr6	1298859	1310272	1299330	1310197	-	Cre06.g258363.t1.2	Cre06.g258363.t1.2		1310010,1309191,1308927,1308643,1308289,1307934,1307669,1307288,1306937,1305738,1305144,1304290,1303780,1301942,1301623,1300602,1300244,1298859	1310272,1309789,1308959,1308747,1308504,1308113,1307732,1307515,1307142,1306743,1305559,1304963,1304128,1303645,1301787,1301443,1300373,1300125	
chr6	1310373	1314524	1310514	1313842	+	Cre06.g258400.t1.2	Cre06.g258400.t1.2		1310373,1310705,1311139,1311504,1311756,1313056,1313527	1310589,1310872,1311230,1311601,1312801,1313307,1314524	
chr6	1314133	1319711	1314195	1319207	+	Cre06.g258450.t1.2	Cre06.g258450.t1.2		1314133,1314579,1314934,1315178,1315383,1315586,1315837,1316379,1316640,1316947,1317292,1317609,1317811,1318109,1318371,1318632,1318903,1319178	1314339,1314664,1315022,1315218,1315448,1315657,1315927,1316476,1316672,1317020,1317390,1317666,1317937,1318215,1318442,1318679,1318981,1319711	
chr6	1314573	1319711	1315203	1319207	+	Cre06.g258450.t2.1	Cre06.g258450.t2.1		1314573,1314934,1315178,1315383,1315586,1315837,1316379,1316640,1316947,1317292,1317609,1317811,1318109,1318371,1318632,1318903,1319178	1314664,1315022,1315218,1315448,1315657,1315927,1316476,1316672,1317020,1317390,1317666,1317937,1318215,1318442,1318679,1318981,1319711	
chr6	1319763	1326144	1319872	1324946	+	Cre06.g258500.t1.1	Cre06.g258500.t1.1		1319763,1320260,1320565,1320803,1321134,1321407,1321665,1322009,1322288,1322516,1322849,1323091,1323334,1323670,1324007,1324269,1324567,1324917	1320019,1320345,1320653,1320843,1321199,1321478,1321755,1322106,1322320,1322589,1322947,1323148,1323463,1323776,1324072,1324316,1324645,1326144	
chr6	1326177	1331562	1327184	1331477	-	Cre06.g258550.t1.1	Cre06.g258550.t1.1		1331207,1329200,1326177	1331562,1331063,1329151	
chr6	1331727	1335152	1332750	1334551	-	Cre06.g258566.t1.1	Cre06.g258566.t1.1		1334819,1331727	1335152,1334700	
chr6	1335207	1338882	1335632	1338414	-	Cre06.g258583.t1.2	Cre06.g258583.t1.2		1337904,1335207	1338882,1337771	null-allele mutant was isolated (PMID 29743196)
chr6	1339112	1342872	1340086	1342812	-	Cre06.g258600.t1.2	Cre06.g258600.t1.2		1342739,1342554,1342214,1341851,1341454,1340884,1340440,1339112	1342872,1342584,1342332,1341951,1341591,1341150,1340635,1340184	
chr6	1339112	1342872	1340086	1342812	-	Cre06.g258600.t2.1	Cre06.g258600.t2.1		1342739,1342554,1342214,1341851,1341466,1341243,1340884,1340440,1339112	1342872,1342584,1342332,1341951,1341591,1341262,1341064,1340635,1340184	
chr6	1347303	1351774	1347620	1350515	+	PGM6	Cre06.g258650.t1.2		1347303,1347886,1348074,1348256,1348556,1349273,1349544,1349962,1350356	1347770,1347981,1348146,1348374,1349113,1349395,1349830,1350160,1351774	phosphoglycerate/bisphosphoglycerate mutase family protein
chr6	1351790	1366702	1352725	1366609	-	PYC1	Cre06.g258700.t1.1		1366576,1363223,1361654,1361156,1358514,1358109,1357591,1357018,1356523,1356060,1355461,1355094,1354684,1354280,1353961,1353566,1353198,1351790	1366702,1363342,1361840,1361346,1358682,1358313,1357801,1357245,1356594,1356165,1355690,1355246,1354812,1354480,1354025,1353672,1353358,1352998	Pyruvate carboxylase [EC:6.4.1.1]; a biotin-dependent enzyme; catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate; enzyme is essential in gluconeogenesis
chr6	1366803	1380404	1366891	1379462	+	LEU2	Cre06.g258733.t2.1		1366803,1367466,1368195,1368671,1369163,1369781,1370804,1371094,1371371,1371508,1375003,1375734,1377298,1377718,1378067,1378674,1379253	1366966,1367552,1368344,1368811,1369305,1369960,1370859,1371193,1371401,1371621,1375189,1375914,1377412,1377808,1378155,1378785,1380404	
chr6	1366623	1380404	1366891	1379462	+	LEU2	Cre06.g258733.t1.1		1366623,1366877,1367466,1368195,1368671,1369163,1369781,1370804,1371094,1371371,1371508,1375003,1375734,1377298,1377718,1378067,1378674,1379253	1366634,1366966,1367552,1368344,1368811,1369305,1369960,1370859,1371193,1371401,1371621,1375189,1375914,1377412,1377808,1378155,1378785,1380404	
chr6	1382765	1388562	1383653	1387795	+	GP2	Cre06.g258800.t1.1		1382765,1383547,1383735,1384225	1383411,1383662,1383935,1388562	Extracellular matrix protein (cell wall protein) GP2; contains (hydroxy)proline-rich (HR) domains. Antibody against deglycosylated GP2 was used successfully to screen for a cDNA clone in a gt11 expression library [PMID: 1699225; M58497]. Independently sequenced cDNA, see AY596305; found in the flagella proteom
chr6	1390224	1393152	1390764	1393021	-	EZY7	Cre06.g258850.t1.2		1392901,1392381,1392129,1391885,1391589,1391294,1390967,1390224	1393152,1392497,1392185,1391947,1391654,1391413,1391011,1390827	Early zygote expressed protein with homology to the stage V sporulation protein S in B. subtillis [PMID: 1848763].  Note that sequence of accession AB267734 differs from genomic sequence here, and may be due to strain differences
chr6	1397795	1400593	1397908	1399670	+	Cre06.g258900.t1.2	Cre06.g258900.t1.2		1397795,1398195,1398781,1399390,1399571	1398021,1398235,1398855,1399439,1400593	
chr6	1400645	1406726	1400909	1406207	+	Cre06.g258950.t1.1	Cre06.g258950.t1.1		1400645,1401434,1402099,1403068,1403712,1404142,1404486,1404971,1405766	1401101,1401692,1402481,1403510,1403828,1404261,1404712,1405566,1406726	
chr6	1406899	1411954	1408620	1411656	-	Cre06.g259000.t1.2	Cre06.g259000.t1.2		1411407,1411056,1410637,1410101,1409687,1409437,1408936,1406899	1411954,1411181,1410700,1410422,1409837,1409496,1409078,1408750	
chr6	1413475	1418836	1413845	1417199	+	Cre06.g259050.t1.1	Cre06.g259050.t1.1		1413475,1414117,1414314,1414674,1415317,1415667,1415901,1416270,1416693,1416977	1413911,1414152,1414535,1414907,1415459,1415745,1415980,1416483,1416770,1418836	
chr6	1418964	1430024	1420227	1430020	-	Cre06.g259100.t1.1	Cre06.g259100.t1.1		1429822,1429204,1428645,1428378,1427953,1427028,1426685,1426221,1425730,1425171,1424569,1423990,1423538,1423145,1422796,1421993,1421292,1420918,1420564,1418964	1430024,1429608,1428758,1428424,1428085,1427093,1426750,1426439,1425912,1425449,1424946,1424334,1423693,1423399,1422990,1422160,1421684,1421016,1420638,1420368	
chr6	1430071	1435501	1430536	1435374	-	EFG8	Cre06.g259150.t1.2		1435279,1435004,1434654,1434240,1433934,1433449,1432867,1432506,1432122,1431705,1431282,1431044,1430796,1430071	1435501,1435151,1434710,1434285,1434025,1433529,1432932,1432549,1432227,1431825,1431487,1431152,1430887,1430611	Putative mitochondrial translation factor Tu
chr6	1435708	1443664	1436301	1443545	-	SELB	Cre06.g259200.t1.1		1443448,1443192,1442041,1441590,1441221,1440705,1440313,1439845,1439283,1438873,1438402,1438063,1437456,1437166,1436677,1435708	1443664,1443292,1442191,1441666,1441347,1440877,1440405,1439989,1439374,1438980,1438608,1438118,1437534,1437276,1436742,1436418	null-allele mutant was isolated (PMID 29743196)
chr6	1443765	1446026	1444218	1445826	+	Cre06.g259250.t1.1	Cre06.g259250.t1.1		1443765,1444210,1445117,1445439	1443937,1444616,1445198,1446026	
chr6	1446029	1446974	1446455	1446804	-	EFS2	Cre06.g259300.t1.2		1446707,1446029	1446974,1446565	
chr6	1447495	1452676	1447529	1451844	+	Cre06.g259350.t1.2	Cre06.g259350.t1.2		1447495,1448481,1448804,1449467,1449766,1450104,1450388,1450759,1451083,1451685	1447930,1448562,1449162,1449554,1449894,1450157,1450564,1450953,1451289,1452676	
chr6	1452735	1458856	1452915	1458096	+	Cre06.g259401.t1.1	Cre06.g259401.t1.1		1452735,1453142,1453336,1453912,1454331,1454633,1455026,1455499,1456957,1457271,1457600,1457985	1452954,1453191,1453435,1454010,1454396,1454730,1455251,1455621,1457005,1457320,1457659,1458856	
chr6	1459005	1461381	1459104	1461004	+	Cre06.g259450.t1.2	Cre06.g259450.t1.2		1459005,1459252,1459648,1460090,1460565,1460935	1459149,1459301,1459870,1460275,1460696,1461381	
chr6	1461399	1464204	1461744	1464125	-	Cre06.g259476.t1.1	Cre06.g259476.t1.1		1463570,1463022,1462448,1462146,1461399	1464204,1463219,1462720,1462269,1461809	
chr6	1464776	1478644	1466358	1478541	-	CYG2	Cre06.g259500.t1.1		1478247,1478032,1477855,1476686,1476301,1473682,1468290,1467729,1467307,1466660,1464776	1478644,1478102,1477936,1477577,1476478,1476094,1473502,1467928,1467373,1467089,1466454	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr6	1481506	1485974	1482193	1485837	-	Cre06.g259550.t1.2	Cre06.g259550.t1.2		1485675,1485381,1485034,1484789,1484506,1484123,1483741,1482625,1481506	1485974,1485572,1485113,1484828,1484647,1484199,1483875,1483493,1482296	
chr6	1486050	1494902	1486216	1494778	-	VPS53	Cre06.g259600.t1.1		1494549,1494425,1494266,1493199,1492969,1492360,1492041,1491610,1491159,1490885,1490622,1490358,1489963,1489532,1489034,1488655,1488249,1487762,1487184,1486598,1486050	1494902,1494474,1494333,1493398,1493078,1492455,1492118,1491855,1491365,1491010,1490681,1490405,1490070,1489737,1489210,1488787,1488374,1487905,1487351,1486930,1486426	Expressed Protein. Similar to VPS53, a component of the GARP (Golgi-associated retrograde protein) complex
chr6	1495035	1500922	1495240	1500365	+	MPA7	Cre06.g259650.t1.2		1495035,1495939,1496479,1496916,1497235,1497864,1498376,1498791,1499522,1499839,1500257	1495471,1496119,1496552,1496946,1497344,1497992,1498447,1498931,1499629,1499961,1500922	
chr6	1500989	1504284	1501493	1504022	-	Cre06.g259700.t1.2	Cre06.g259700.t1.2		1503842,1503561,1503205,1502509,1502050,1500989	1504284,1503736,1503279,1503004,1502315,1501818	
chr6	1504775	1511826	1505181	1510031	+	Cre06.g259750.t1.1	Cre06.g259750.t1.1		1504775,1505111,1506302,1506715,1509062	1504904,1505970,1506478,1508925,1511826	
chr6	1511843	1519144	1512358	1518935	-	CWC22	Cre06.g259800.t1.2		1518153,1517719,1517416,1516900,1516398,1516099,1515677,1515206,1514825,1514260,1513825,1513397,1512831,1511843	1519144,1517864,1517483,1517022,1516553,1516176,1515819,1515407,1514975,1514465,1513982,1513547,1512969,1512642	high sequence similarity to putative cwc22 pre-mRNA splicing factor in Oryza sativa; shares MIF4G and MA3 domains in common with eIF4g. Contains alpha-helical MIF4G and MA3 domains, occurring in eIF4g, NM, D2p, CBP80; and MA3, DAP-5, respectively.
chr6	1519295	1520180	1519410	1519816	+	PRPL29	Cre06.g259850.t1.2		1519295	1520180	
chr6	1525413	1528648	1526325	1528616	-	ATPC	Cre06.g259900.t1.2		1528520,1528279,1527979,1527600,1525413	1528648,1528434,1528125,1527711,1526891	ATP synthase CF1 gamma chain, chloroplast precursor, gi:114638, PMID: 2904436, PMID: 8349573, PMID: 8543042
chr6	1529693	1538454	1529874	1538254	-	Cre06.g259950.t1.1	Cre06.g259950.t1.1		1538162,1537819,1536927,1535950,1534964,1534658,1534466,1534234,1533795,1533334,1532995,1529693	1538454,1538042,1537749,1536778,1535812,1534792,1534522,1534294,1533984,1533533,1533092,1532823	
chr6	1529693	1538454	1529874	1538254	-	Cre06.g259950.t2.1	Cre06.g259950.t2.1		1538162,1537819,1536927,1535950,1534964,1534658,1534466,1534234,1533795,1533334,1532995,1529693	1538454,1538042,1537740,1536778,1535812,1534792,1534522,1534294,1533984,1533533,1533092,1532823	
chr6	1539345	1543661	1540202	1543117	-	Cre06.g260000.t1.1	Cre06.g260000.t1.1		1543404,1543105,1541789,1539345	1543661,1543167,1542733,1541621	
chr6	1543825	1547626	1544267	1547374	+	Cre06.g260050.t1.2	Cre06.g260050.t1.2		1543825,1544450,1544830,1545506,1546090,1547242	1544289,1544481,1545210,1545905,1547021,1547626	
chr6	1547639	1550024	1548274	1549956	-	Cre06.g260100.t1.2	Cre06.g260100.t1.2		1549845,1549639,1549102,1548644,1547639	1550024,1549758,1549555,1548878,1548440	UAA transporter
chr6	1550157	1552524	1550502	1552497	-	FAP393	Cre06.g260150.t1.2		1552432,1552039,1551850,1551466,1551242,1550918,1550157	1552524,1552120,1551893,1551649,1551365,1550994,1550778	Conserved Protein with S-adenosylmethionine-dependent methyltransferase Domain
chr6	1552625	1555450	1553021	1553958	+	MCP18	Cre06.g260200.t1.2		1552625	1555450	Possible 2-oxodicarboxylate carrier; highly related to plant mitochondrial carriers
chr6	1555835	1558354	1556311	1558179	+	CEM1	Cre06.g260250.t1.2		1555835,1556956,1557504	1556539,1557057,1558354	Similar to the plastid encoded cemA, chloroplast envelope membrane protein; contains weak similarity to Proton extrusion protein pcxA (Swiss-Prot:P7528) which seems involved in both light-induced Na+-dependent proton extrusion and CO(2) transport; possibly involved in CO2 uptake
chr6	1558405	1560114	1558532	1559761	+	Cre06.g260300.t1.2	Cre06.g260300.t1.2		1558405,1559206,1559643	1558858,1559406,1560114	
chr6	1558405	1558896	1558532	1558863	+	Cre06.g260300.t2.1	Cre06.g260300.t2.1		1558405	1558896	
chr6	1560293	1565434	1561037	1565400	-	DNJ6	Cre06.g260350.t1.2		1565147,1564754,1564330,1564030,1563587,1563200,1562915,1562579,1562057,1561697,1561441,1560293	1565434,1564878,1564449,1564161,1563744,1563323,1563004,1562649,1562234,1561900,1561519,1561195	DnaJ-like protein; similar to E. coli Caj1p and to presumably cytosolic Arabidopsis Q9T24 and Q9SJS8; contains long N-terminal extension, which is absent from Arabidopsis homologs; TargetP gives no clear prediction for DNJ6; contains N-terminal J-domain
chr6	1565555	1567736	1565767	1566506	+	FAP287	Cre06.g260400.t1.2		1565555,1565986,1566179,1566447	1565891,1566078,1566271,1567736	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]; maybe ubiquitin related
chr6	1568135	1574825	1568630	1573612	+	LCI20	Cre06.g260450.t1.2		1568135,1568764,1568938,1569240,1569698,1570164,1570590,1571080,1571547,1571905,1572203,1572855,1573394	1568692,1568833,1569063,1569329,1569826,1570226,1570791,1571177,1571643,1571999,1572491,1572989,1574825	possibly chloroplast-located dicarboxylate transporter, homologous to AtDCT1/2 [PMID:7873543]; Low-CO2 Inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]; conserved in green lineage
chr6	1575593	1585269	1576513	1585139	-	Cre06.g260500.t1.1	Cre06.g260500.t1.1		1585070,1584894,1584634,1584388,1584099,1583648,1583238,1582933,1582665,1582291,1581884,1581542,1581107,1580625,1580383,1579856,1578257,1575593	1585269,1584980,1584723,1584460,1584211,1583711,1583368,1583028,1582762,1582419,1582132,1581690,1581261,1580861,1580445,1580086,1579664,1578099	
chr6	1586072	1597109	1587279	1596947	-	CYG1	Cre06.g260550.t1.1		1596710,1596507,1596296,1595749,1595039,1588945,1588740,1588417,1588109,1586072	1597109,1596577,1596356,1596131,1595606,1594824,1588766,1588609,1588175,1587805	C terminal domain similar to guanylate cyclase 1 from Homo sapiens
chr6	1597340	1602499	1597987	1602259	-	Cre06.g260600.t1.2	Cre06.g260600.t1.2		1602213,1602034,1601830,1601576,1601124,1600596,1600172,1599740,1599325,1598971,1598561,1598233,1597340	1602499,1602149,1601943,1601668,1601294,1600781,1600314,1599833,1599480,1599089,1598734,1598400,1598054	EF-hand domain
chr6	1602664	1607299	1603310	1606914	-	Cre06.g260650.t1.1	Cre06.g260650.t1.1		1606505,1605275,1604762,1603986,1602664	1607299,1605887,1604963,1604489,1603790	
chr6	1608173	1616039	1609369	1615544	-	UAPA6	Cre06.g260700.t1.2		1615439,1615210,1614924,1614457,1614153,1613841,1613431,1612849,1612639,1612293,1611956,1611759,1611541,1611243,1610970,1610740,1610386,1609949,1608173	1616039,1615238,1614993,1614553,1614187,1613968,1613506,1613060,1612736,1612404,1612048,1611821,1611625,1611277,1611091,1610784,1610578,1610109,1609617	related to plants and fungi; also related to bacterial inner membrane proteins
chr6	1616574	1626139	1617857	1626088	-	CYG23	Cre06.g260750.t1.1		1625857,1625635,1624961,1624275,1619187,1618820,1618577,1616574	1626139,1625781,1625356,1624703,1624031,1618997,1618649,1618383	Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr6	1626194	1628349	1626410	1628162	-	Cre06.g260776.t1.1	Cre06.g260776.t1.1		1627905,1626194	1628349,1627812	
chr6	1628404	1631549	1629441	1631454	-	Cre06.g260800.t1.2	Cre06.g260800.t1.2		1631370,1630967,1630562,1630171,1629902,1628404	1631549,1631146,1630659,1630243,1629949,1629501	
chr6	1631650	1640049	1631728	1639719	+	NOP14	Cre06.g260850.t1.2		1631650,1632242,1632581,1632814,1633244,1633608,1633990,1634542,1634998,1635416,1636619,1637305,1639063,1639528	1631926,1632314,1632664,1632920,1633387,1633768,1634279,1634714,1635235,1635717,1637036,1638085,1639316,1640049	Nucleolar protein required for nuclear export of 40S ribosomal subunits; homologue of the yeast NOP14 protein
chr6	1640134	1641349	1640629	1641263	-	Cre06.g260900.t1.2	Cre06.g260900.t1.2		1640134	1641349	
chr6	1641755	1649559	1642358	1648693	-	Cre06.g260950.t1.2	Cre06.g260950.t1.2		1649314,1648573,1647614,1646984,1646442,1645978,1645639,1645377,1644843,1644340,1643930,1643471,1643123,1642745,1641755	1649559,1648784,1647715,1647317,1646533,1646089,1645727,1645448,1645079,1644486,1643974,1643611,1643218,1642840,1642448	
chr6	1649684	1651119	1650811	1651058	-	Cre06.g260976.t1.1	Cre06.g260976.t1.1		1649684	1651119	
chr6	1651220	1652875	1651311	1652486	+	PSBR	Cre06.g261000.t1.2		1651220,1651584,1652001,1652413	1651355,1651761,1652131,1652875	similar to At1g79040, chloroplast-targeted
chr6	1652884	1663049	1654040	1662957	-	Cre06.g261026.t1.1	Cre06.g261026.t1.1		1662766,1662202,1661790,1661581,1661185,1660835,1660112,1659707,1659064,1658135,1656921,1656542,1656120,1655424,1654727,1652884	1663049,1662262,1661846,1661637,1661315,1660883,1660507,1659864,1659499,1658585,1657615,1656601,1656325,1655556,1654783,1654157	
chr6	1663514	1670039	1664062	1669916	-	Cre06.g261050.t1.2	Cre06.g261050.t1.2		1669632,1669302,1668936,1668506,1668182,1667528,1667245,1666458,1665547,1665243,1663514	1670039,1669374,1669042,1668664,1668260,1667788,1667310,1666865,1665657,1665305,1664197	
chr6	1670210	1674357	1670330	1673438	+	Cre06.g261100.t1.2	Cre06.g261100.t1.2		1670210,1670798,1671218,1671623,1671952,1672368,1672946	1670575,1670918,1671333,1671710,1672206,1672499,1674357	
chr6	1674759	1677049	1675568	1676926	-	Cre06.g261123.t1.2	Cre06.g261123.t1.2		1676823,1676620,1674759	1677049,1676754,1676482	
chr6	1677104	1684079	1678101	1684040	-	BIO2	Cre06.g261150.t1.2		1683846,1683666,1682929,1682335,1681392,1680824,1680238,1679350,1678990,1677104	1684079,1683759,1683066,1682406,1681457,1680958,1680324,1679448,1679109,1678416	
chr6	1684220	1688856	1684548	1687937	+	ERG5	Cre06.g261200.t1.2		1684220,1686051,1686462,1686711,1687165,1687599	1684759,1686151,1686532,1686761,1687316,1688856	similar to SUR2 proteins from Arabidopsis and yeast
chr6	1689414	1694829	1689788	1694549	-	Cre06.g261300.t1.2	Cre06.g261300.t1.2		1693976,1693606,1693245,1692929,1692509,1691295,1690268,1689414	1694829,1693682,1693338,1693033,1692574,1692227,1690981,1689788	
chr6	1694950	1697271	1695072	1696245	+	Cre06.g261350.t1.1	Cre06.g261350.t1.1		1694950,1695427,1695753,1696137	1695163,1695548,1695857,1697271	
chr6	1697627	1710129	1697856	1709814	-	Cre06.g261400.t1.1	Cre06.g261400.t1.1		1709724,1709595,1709308,1709097,1708642,1708260,1707906,1707686,1707451,1707026,1706551,1706285,1706000,1704809,1704317,1704019,1703597,1703238,1702954,1702656,1702299,1701968,1701615,1701181,1700961,1700631,1700313,1699829,1699143,1698224,1697627	1710129,1709651,1709467,1709170,1709003,1708396,1708028,1707777,1707541,1707310,1706930,1706399,1706181,1705870,1704670,1704153,1703866,1703366,1703025,1702814,1702475,1702111,1701784,1701412,1701023,1700789,1700481,1700140,1699693,1698955,1698042	
chr6	1710713	1713329	1711145	1712984	-	Cre06.g261450.t1.2	Cre06.g261450.t1.2		1712941,1712278,1712047,1711811,1711418,1710713	1713329,1712343,1712105,1711895,1711596,1711253	High mobility group protein, ChromDB HMGB341; a putative chromatin-associated HMGB protein containing one HMG box
chr6	1714710	1719679	1715203	1719609	-	CPLD58	Cre06.g261500.t1.2		1719492,1719226,1718938,1718514,1718235,1717329,1716633,1716404,1716101,1715600,1714710	1719679,1719306,1719029,1718637,1718315,1717430,1716718,1716503,1716196,1715674,1715224	
chr6	1719800	1722738	1719897	1722492	+	Cre06.g261550.t1.2	Cre06.g261550.t1.2		1719800,1720160,1720423,1720611,1721145,1721515,1721910,1722318	1720028,1720254,1720478,1721029,1721259,1721619,1722080,1722738	
chr6	1722764	1724559	1722916	1724155	-	Cre06.g261600.t1.2	Cre06.g261600.t1.2		1723772,1723376,1722764	1724559,1723583,1723195	
chr6	1724769	1726219	1725405	1725982	-	PFD1	Cre06.g261650.t1.1		1724769	1726219	beta-type subunit of molecular chaperone Prefoldin (PMID: 11599560);has two coiled-coil domains separated by beta-sheet; stabilizes polypeptide chains prior to folding within CCT chaperonin, in particular tubulin
chr6	1726350	1730016	1726450	1729291	+	Cre06.g261700.t1.2	Cre06.g261700.t1.2		1726350,1726572,1726815,1727252,1727700,1728533,1728886,1729186	1726478,1726650,1726901,1727393,1727900,1728641,1728944,1730016	
chr6	1730260	1737111	1730463	1735780	+	Cre06.g261750.t1.2	Cre06.g261750.t1.2		1730260,1730785,1731112,1731619,1731981,1732788,1733170,1733571,1733940,1734498,1734813	1730648,1730871,1731228,1731772,1732076,1732876,1733248,1733650,1734058,1734531,1737111	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family that includes Low-CO2-inducible membrane protein LCI11
chr6	1737240	1742278	1737546	1741746	+	Cre06.g261800.t1.2	Cre06.g261800.t1.2		1737240,1738163,1738512,1739094,1739522,1739825,1740373,1740783,1741144,1741635	1737717,1738204,1738604,1739185,1739630,1739929,1740485,1740966,1741248,1742278	putative prephenate dehydratase family protein [EC:4.2.1.51]; cyclohexadienyl dehydratase
chr6	1742294	1744739	1742839	1744621	-	Cre06.g261850.t1.2	Cre06.g261850.t1.2		1744399,1744051,1743614,1742294	1744739,1744167,1743763,1743250	
chr6	1744794	1748079	1745829	1747883	-	FAP71	Cre06.g261900.t1.2		1747857,1747648,1747507,1747288,1746929,1746359,1746022,1744794	1748079,1747744,1747578,1747393,1747032,1746649,1746165,1745883	Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG2 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]
chr6	1748327	1750739	1748524	1750351	-	ANK11	Cre06.g261950.t1.2		1750329,1749794,1749517,1749213,1748966,1748327	1750739,1749940,1749578,1749263,1749013,1748704	protein of unknown function with ankyrin repeats
chr6	1750840	1754631	1751247	1754216	+	SNR5	Cre06.g262000.t1.2		1750840,1751646,1751932,1752438,1752816,1753348,1754021	1751473,1751677,1752015,1752596,1752990,1753469,1754631	
chr6	1754634	1759569	1755264	1759385	-	AEP1	Cre06.g262050.t1.2		1759130,1758695,1758083,1757677,1757174,1756769,1756450,1756051,1755544,1754634	1759569,1758824,1758189,1757779,1757373,1756831,1756487,1756136,1755683,1755309	putative aldose-1-epimerase (EC 5.1.3.3) (aldose mutarotase), possible chloroplast localization
chr6	1759671	1765361	1759765	1764877	+	GSR1	Cre06.g262100.t1.1		1759671,1759978,1760382,1760774,1761128,1761507,1761932,1762297,1762611,1763057,1763360,1763659,1764172,1764444,1764702	1759855,1760042,1760544,1760843,1761261,1761583,1762027,1762380,1762743,1763137,1763427,1763741,1764241,1764536,1765361	glutathione reductase (GR) (Grase)
chr6	1765739	1767890	1765795	1767597	+	Cre06.g262150.t1.1	Cre06.g262150.t1.1		1765739,1766130,1766677,1767089,1767441	1765922,1766383,1766877,1767172,1767890	
chr6	1765959	1767890	1766353	1767597	+	Cre06.g262150.t2.1	Cre06.g262150.t2.1		1765959,1766677,1767089,1767441	1766383,1766877,1767172,1767890	
chr6	1767939	1770290	1768080	1769711	+	Cre06.g262200.t1.2	Cre06.g262200.t1.2		1767939,1768312,1768669,1768961,1769263	1768153,1768407,1768739,1769097,1770290	
chr6	1770292	1773568	1771188	1772925	-	AP1M1	Cre06.g262250.t1.2		1773305,1771938,1771553,1770292	1773568,1773151,1771744,1771287	Expressed Protein. Mu1-Adaptin. Clathrin Adaptor Complex Medium Subunit, putative member of AP-1 complex
chr6	1773769	1779587	1774562	1778419	+	CYN51	Cre06.g262300.t1.2		1773769,1774687,1775152,1775548,1776372,1776680,1777309,1777552,1777860,1778320	1774602,1774898,1775320,1775682,1776455,1776738,1777337,1777645,1777985,1779587	Peptidyl-prolyl cis-trans isomerase (rotamase); similar to CYN52 and CYN53, but a single cyclophilin domain; contains an N-term PAN domain
chr6	1780643	1784978	1781145	1784827	-	Cre06.g262350.t1.2	Cre06.g262350.t1.2		1780643	1784978	
chr6	1785163	1799598	1785826	1799340	-	Cre06.g262400.t1.1	Cre06.g262400.t1.1		1799308,1799177,1798552,1798139,1797800,1797447,1796620,1796303,1794754,1794391,1794003,1793482,1793074,1792524,1792143,1791401,1790906,1789841,1789426,1789021,1788629,1788365,1787551,1787022,1785163	1799598,1799244,1798789,1798229,1797834,1797554,1796692,1796392,1796172,1794544,1794058,1793761,1793171,1792674,1792249,1791781,1791004,1790541,1789594,1789182,1788724,1788438,1787776,1787239,1786709	
chr6	1800150	1802490	1800429	1801674	+	VTE7	Cre06.g262450.t1.1		1800150,1800428,1800935,1801437	1800291,1800585,1801129,1802490	
chr6	1802539	1807510	1802676	1806373	+	Cre06.g262500.t1.2	Cre06.g262500.t1.2		1802539	1807510	
chr6	1807559	1811890	1807781	1811277	+	Cre06.g262550.t1.2	Cre06.g262550.t1.2		1807559	1811890	null-allele passenger mutation was isolated (PMID 29743196)
chr6	1811923	1815078	1812190	1815023	-	Cre06.g262601.t1.1	Cre06.g262601.t1.1		1814681,1813504,1811923	1815078,1814462,1813349	
chr6	1815149	1824398	1815918	1824311	-	TAA1	Cre06.g262650.t1.1		1824110,1823895,1823511,1822776,1820601,1820393,1818977,1818561,1817243,1816680,1816267,1815149	1824398,1824011,1823714,1823312,1822605,1820469,1820183,1818763,1818315,1817058,1816356,1816077	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; stabilizes psaA mRNA and activates its translation
chr6	1824843	1826288	1825451	1826134	-	QCR7	Cre06.g262700.t1.1		1826122,1825917,1825701,1824843	1826288,1826039,1825850,1825538	Ubiquinol-cytochrome c oxidoreductase (Complex III) 14 kDa protein (similar to bovine Complex III subunit VI (14 kDa), human subunit QCRB and yeast QCR7 subunit) [PMID: 15710684]
chr6	1826389	1832270	1827326	1831846	+	Cre06.g262750.t1.1	Cre06.g262750.t1.1		1826389,1826801,1827596,1828096,1829396,1831165	1826687,1827404,1827892,1829103,1830985,1832270	
chr6	1832273	1841968	1832745	1841756	-	Cre06.g262800.t1.2	Cre06.g262800.t1.2		1841657,1841362,1841038,1840775,1840438,1840101,1839744,1839412,1839024,1838767,1838356,1837892,1837643,1837441,1837086,1836856,1836585,1836185,1835767,1835172,1834943,1834144,1833972,1833350,1832273	1841968,1841529,1841160,1840906,1840548,1840238,1839937,1839544,1839213,1838867,1838586,1838171,1837755,1837530,1837270,1836956,1836685,1836426,1836013,1835627,1835029,1834743,1834025,1833784,1833219	
chr6	1842069	1843740	1842316	1843174	+	RAB23	Cre06.g262850.t1.2		1842069,1842602	1842515,1843740	
chr6	1843743	1848608	1844258	1848506	-	PFK1	Cre06.g262900.t1.2		1848250,1848103,1847797,1847546,1847271,1847045,1846685,1846412,1846094,1845750,1845453,1845218,1844943,1844472,1843743	1848608,1848145,1847840,1847605,1847386,1847104,1846840,1846489,1846276,1845843,1845514,1845292,1845035,1844675,1844324	Putative phosphofructokinase family protein (EC 2.7.1.11 or 2.7.1.90), based on similarity to rice (GenBank BAD29254) and Arabidopsis (GenBank AAM20228) genes; possible plastid-targeted splice variant of PFK1b; null-allele mutant was isolated (PMID 29743196)
chr6	1848719	1855290	1849327	1854582	+	Cre06.g262950.t1.1	Cre06.g262950.t1.1		1848719,1850021,1850482,1850790,1851382,1851721,1852221,1852678,1853383,1853751,1854090,1854486	1849861,1850277,1850657,1851236,1851508,1852036,1852514,1852798,1853550,1853835,1854246,1855290	
chr6	1855429	1860540	1855454	1860274	+	Cre06.g262977.t1.2	Cre06.g262977.t1.2		1855429,1856220,1856646,1857029,1857657,1857996,1858303,1858676,1858963,1859344,1859661,1860181	1855979,1856455,1856839,1857427,1857783,1858089,1858482,1858796,1859130,1859428,1859817,1860540	
chr6	1860553	1866198	1860997	1866053	-	Cre06.g263000.t1.1	Cre06.g263000.t1.1		1865954,1865775,1865442,1864649,1864393,1864036,1863667,1863255,1862099,1861772,1861324,1860553	1866198,1865859,1865535,1865158,1864456,1864193,1863841,1863384,1863090,1861871,1861619,1861063	
chr6	1866873	1869495	1867448	1869365	-	EFP2	Cre06.g263050.t1.2		1869284,1868845,1868352,1868013,1867678,1866873	1869495,1869006,1868428,1868131,1867826,1867487	Putative mitochondrial elongation factor P (EF-P)
chr6	1869679	1873570	1870116	1873139	+	Cre06.g263100.t1.1	Cre06.g263100.t1.1		1869679,1870085,1870463,1870802,1870981,1871182,1871333,1871614,1871848	1869979,1870250,1870532,1870828,1871053,1871240,1871409,1871685,1873570	
chr6	1873629	1878653	1873756	1877662	+	Cre06.g263150.t1.2	Cre06.g263150.t1.2		1873629,1873893,1874048,1874443,1875120,1875404,1875900,1876405,1876750	1873791,1873951,1874158,1874694,1875223,1875558,1876071,1876458,1878653	
chr6	1879286	1881228	1880232	1880605	-	Cre06.g263176.t1.1	Cre06.g263176.t1.1		1880800,1879286	1881228,1880654	
chr6	1881324	1884840	1881435	1883966	+	FAP325	Cre06.g263200.t1.1		1881324,1881860,1882253,1882619,1883038,1883413,1883646,1883933	1881472,1881944,1882321,1882710,1883095,1883519,1883746,1884840	
chr6	1885548	1898568	1886227	1898361	-	Cre06.g263250.t1.1	Cre06.g263250.t1.1		1898265,1898067,1889028,1888674,1887044,1886888,1885548	1898568,1898187,1897762,1888908,1888465,1886920,1886751	
chr6	1898653	1901658	1899008	1901578	-	Cre06.g263289.t1.2	Cre06.g263289.t1.2		1901377,1900838,1900441,1900201,1899899,1898653	1901658,1900984,1900518,1900280,1900040,1899749	
chr6	1901709	1904791	1902524	1904666	-	Cre06.g263300.t1.2	Cre06.g263300.t1.2		1904636,1904483,1904276,1904054,1903705,1903037,1901709	1904791,1904542,1904371,1904134,1903799,1903229,1902674	
chr6	1904908	1912118	1905626	1911670	-	Cre06.g263357.t1.2	Cre06.g263357.t1.2		1912042,1911132,1910029,1909315,1908078,1907421,1906911,1906403,1906061,1904908	1912118,1911772,1910808,1909683,1909169,1907581,1906985,1906515,1906118,1905770	
chr6	1912489	1914708	1912513	1913615	+	Cre06.g263400.t1.2	Cre06.g263400.t1.2		1912489,1912689,1912841,1913025,1913558	1912610,1912734,1912895,1913171,1914708	
chr6	1914759	1918081	1915409	1917623	+	EEF1A3	Cre06.g263450.t1.2		1914759,1915398,1915560,1915768,1916087,1916415,1916876	1914894,1915444,1915653,1915918,1916202,1916663,1918081	EEF1a; high similarity to EF1A2; found in the flagellar proteome [PMID: 1599882]
chr6	1914759	1918081	1915815	1917623	+	EEF1A3	Cre06.g263450.t2.1		1914759,1915398,1915560,1915768,1916087,1916415,1916876	1914894,1915444,1915653,1915918,1916202,1916663,1918081	EEF1a; high similarity to EF1A2; found in the flagellar proteome [PMID: 1599882]
chr6	1918261	1920898	1918658	1920630	-	Cre06.g263500.t1.2	Cre06.g263500.t1.2		1920254,1919830,1919572,1919089,1918261	1920898,1919865,1919665,1919238,1918785	
chr6	1921009	1923037	1921204	1922481	+	SELU1	Cre06.g263550.t1.2		1921009,1921767,1922151	1921346,1921870,1923037	Similar to selenoprotein SELU, but lack selenocysteine residue; R53.5-related; low-CO2-inducible protein 7,  regulated by CCM1 [PMID: 15235119]; identified in the flagellar and basal body proteome [PMID: 15137946] and upregulated by deflagellation
chr6	1923043	1926908	1923212	1925923	-	Cre06.g263600.t1.1	Cre06.g263600.t1.1		1926708,1926207,1925823,1925533,1923617,1923043	1926908,1926603,1925949,1925694,1925323,1923379	
chr6	1926960	1931458	1927524	1931356	-	Cre06.g263602.t1.2	Cre06.g263602.t1.2		1931245,1930851,1930419,1929928,1929572,1929154,1928722,1927895,1927618,1926960	1931458,1931174,1930541,1929996,1929613,1929390,1928870,1928506,1927699,1927524	
chr6	1931759	1944810	1932010	1944031	+	Cre06.g263650.t1.1	Cre06.g263650.t1.1		1931759,1932226,1932636,1933134,1933451,1933908,1934437,1934934,1935656,1936692,1937246,1937774,1938572,1939675,1940259,1940661,1941134,1941642,1942021,1942993,1943818	1932049,1932311,1932765,1933199,1933691,1934037,1934625,1935492,1935807,1936978,1937586,1938372,1939397,1939947,1940379,1940803,1941243,1941758,1942769,1943558,1944810	null-allele mutant was isolated (PMID 29743196)
chr6	1945363	1948808	1946925	1948521	-	Cre06.g263700.t1.1	Cre06.g263700.t1.1		1948224,1947877,1947622,1945363	1948808,1947906,1947663,1947234	
chr6	1949875	1951683	1949920	1950270	+	Cre06.g263750.t1.2	Cre06.g263750.t1.2		1949875,1950132	1950010,1951683	
chr6	1951686	1963931	1952540	1963227	-	Cre06.g263800.t1.1	Cre06.g263800.t1.1		1963083,1962437,1962109,1961807,1961486,1960985,1960667,1960139,1958064,1957714,1957391,1956960,1956578,1956236,1955817,1955346,1955030,1954725,1954286,1953817,1953280,1952839,1951686	1963931,1962556,1962144,1961869,1961613,1961127,1960806,1960295,1958228,1957840,1957474,1957023,1956693,1956323,1955915,1955453,1955149,1954829,1954372,1953987,1953438,1953043,1952713	Putative splicing endonuclease positive effector, related to SEN1
chr6	1963986	1964561	1964021	1964343	-	Cre06.g263841.t1.2	Cre06.g263841.t1.2		1963986	1964561	
chr6	1965502	1970102	1966458	1970079	-	Cre06.g263850.t1.1	Cre06.g263850.t1.1		1969850,1969639,1969341,1969110,1968595,1968151,1967542,1967127,1966808,1965502	1970102,1969732,1969398,1969187,1968696,1968265,1967771,1967259,1966882,1966550	related to Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT); named PPT2 in gi:32815801
chr6	1970156	1971697	1970925	1971562	-	Cre06.g263900.t1.2	Cre06.g263900.t1.2		1970156	1971697	
chr6	1971883	1983281	1972989	1982809	-	Cre06.g263950.t1.1	Cre06.g263950.t1.1		1983116,1982585,1982101,1981759,1981410,1981040,1980662,1980338,1979851,1979443,1978983,1978751,1978407,1978121,1977655,1977339,1977081,1976761,1976345,1976002,1975714,1975443,1975049,1974741,1974245,1973892,1973631,1973357,1971883	1983281,1982835,1982284,1981875,1981485,1981146,1980769,1980493,1979904,1979606,1979163,1978838,1978582,1978201,1977849,1977409,1977164,1976890,1976483,1976093,1975852,1975537,1975174,1974834,1974506,1974027,1973711,1973464,1973166	
chr6	1983408	1985303	1983547	1984442	+	Cre06.g264000.t1.2	Cre06.g264000.t1.2		1983408,1983652,1984021,1984350	1983583,1983709,1984122,1985303	
chr6	1986462	1991287	1986989	1990613	+	Cre06.g264050.t1.2	Cre06.g264050.t1.2		1986462,1987233,1987678,1988077,1988302,1988943,1989293,1989714,1990083,1990535	1987090,1987329,1987751,1988089,1988388,1989054,1989339,1989783,1990159,1991287	
chr6	1991606	1997471	1993240	1997341	-	Cre06.g264100.t1.1	Cre06.g264100.t1.1		1997300,1997104,1996793,1996555,1996257,1995942,1995573,1994931,1994288,1994107,1991606	1997471,1997142,1996864,1996711,1996325,1996050,1995664,1995450,1994736,1994154,1993939	
chr6	1998661	2009839	2000791	2009839	-	MAW11	Cre06.g264150.t1.1		2007352,2006800,2006464,2005369,2001355,1998661	2009839,2007170,2006637,2006297,2005150,2001223	Contains a predicted C-terminal transmembrane domain.
chr6	2010871	2014325	2011596	2014244	-	SDH2	Cre06.g264200.t1.2		2013912,2013402,2012997,2012083,2010871	2014325,2013611,2013149,2012197,2011662	Iron-sulfur subunit of mitochondrial succinate dehydrogenase [ubiquinone] (complex II), precursor of iron-sulfur protein, (Ip, iron-sulfur subunit of complex II); SDHB
chr6	2014441	2020935	2014985	2020492	-	Cre06.g264250.t1.1	Cre06.g264250.t1.1		2020741,2020390,2019991,2019707,2019371,2018981,2018400,2017990,2017695,2017499,2017134,2016925,2016761,2016496,2016051,2015827,2015514,2014441	2020935,2020626,2020093,2019810,2019439,2019188,2018536,2018129,2017809,2017532,2017195,2016953,2016770,2016586,2016142,2015886,2015573,2015282	FAD-dependent oxidoreductase, phytoene dehydrogenase.  Glycine/D-amino acid oxidase-like protein
chr6	2021808	2023915	2022605	2023827	-	PRPS15	Cre06.g264300.t1.2		2023802,2023592,2023275,2021808	2023915,2023664,2023505,2022702	imported to chloroplast; Chloroplast small ribosomal subunit S15
chr6	2024008	2026477	2024098	2025785	+	PRPL13	Cre06.g264350.t1.2		2024008,2024279,2024506,2024764,2025575	2024164,2024354,2024656,2024938,2026477	imported to chloroplast; Chloroplast large ribosomal subunit protein L13
chr6	2026480	2038265	2027299	2038023	-	Cre06.g264400.t1.1	Cre06.g264400.t1.1		2038197,2037857,2037437,2034031,2032897,2032427,2030959,2030408,2030092,2029150,2026480	2038265,2038056,2037585,2037210,2033896,2032728,2032230,2030801,2030264,2029890,2029012	
chr6	2038320	2043925	2038778	2043479	-	AOT5	Cre06.g264450.t1.2		2043650,2043418,2043102,2042614,2042106,2041551,2041034,2040638,2040079,2039274,2038320	2043925,2043534,2043148,2042766,2042230,2041638,2041171,2040762,2040196,2039678,2039012	belongs to AAAP family of amino acid/auxin permeases; most similar to animal and fungal relatives, in particular to neutral amino acid transporter system N2; identified as MOT57" by comparative genomics as being present only in organisms having motile cilia
chr6	2044036	2047057	2044179	2046694	+	Cre06.g264500.t1.2	Cre06.g264500.t1.2		2044036,2045067,2045492,2045970,2046396	2044847,2045221,2045624,2046095,2047057	
chr6	2047166	2050533	2047356	2049688	+	CGL81	Cre06.g264550.t1.2		2047166,2047564,2048085,2048510,2048854,2049505	2047464,2047708,2048174,2048610,2049045,2050533	
chr6	2050540	2051115	2050757	2051070	-	HFO14	Cre06.g264600.t1.2		2050540	2051115	replication linked H4; histone gene cluster XIV (type 43AB)
chr6	2051306	2052527	2051351	2051760	+	HTR14	Cre06.g264650.t1.2		2051306	2052527	replication linked H3; histone gene cluster XIV (type 43AB)
chr6	2053026	2056617	2054030	2056362	+	CSS1	Cre06.g264700.t1.2		2053026,2054009,2054457,2054786,2055327,2055580,2056177	2053809,2054177,2054594,2055127,2055430,2055965,2056617	expressed protein of unknown function; the gene interrupts histone gene cluster XIV, as does highly similar and linked CSS2
chr6	2056670	2058105	2057593	2057993	-	HTA14	Cre06.g264750.t1.2		2056670	2058105	replication linked H2A; histone gene cluster XIV (type 43AB)
chr6	2058226	2059267	2058274	2058737	+	HTB14	Cre06.g264800.t1.2		2058226	2059267	replication linked H2B ; histone gene cluster XIV (type 43AB)
chr6	2059336	2076017	2059830	2075295	+	Cre06.g264850.t1.1	Cre06.g264850.t1.1		2059336,2060303,2061117,2061522,2062203,2062533,2063159,2063666,2064151,2064579,2064997,2065412,2065741,2066204,2066593,2066953,2067267,2067660,2067969,2068250,2068822,2069664,2070529,2070770,2071187,2071596,2071901,2072471,2073002,2073462,2073728,2073917,2074228,2074491	2060164,2060694,2061161,2061971,2062306,2062677,2063287,2063846,2064300,2064799,2065092,2065562,2065880,2066263,2066667,2067059,2067396,2067770,2068057,2068322,2068950,2069806,2070615,2070826,2071275,2071667,2072085,2072586,2073143,2073512,2073769,2074057,2074314,2076017	
chr6	2087560	2088335	2087845	2088308	-	HTB13	Cre06.g264900.t1.1		2087560	2088335	replication linked H2B; histone gene cluster XIII (type 43AB)
chr6	2088466	2089257	2088585	2088985	+	HTA13	Cre06.g264950.t1.2		2088466	2089257	replication linked H2A; histone gene cluster XIII (type 43AB)
chr6	2089322	2090505	2089518	2090401	-	HTR13	Cre06.g265000.t1.2		2090007,2089322	2090505,2089703	Replication-linked Histone H3; histone gene cluster XIII (type 43AB); the model may be wrong, as it contains an intron and the second exon (no EST support) is highly similar to CSS1/2 histone cluster associated genes
chr6	2090626	2091147	2090660	2090973	+	HFO13	Cre06.g265050.t1.2		2090626	2091147	replication linked H4; histone gene cluster XIII (type 43AB)
chr6	2091200	2099255	2091755	2099193	-	Cre06.g265100.t1.1	Cre06.g265100.t1.1		2099108,2098696,2098278,2098049,2097743,2097305,2096986,2096514,2096106,2095842,2095528,2095202,2094899,2094253,2093855,2093529,2093286,2093011,2092518,2092208,2091200	2099255,2098831,2098338,2098126,2097865,2097421,2097061,2096607,2096198,2095980,2095621,2095260,2094953,2094500,2093972,2093608,2093301,2093093,2092793,2092264,2091893	
chr6	2099386	2106123	2099541	2105430	+	Cre06.g265150.t1.1	Cre06.g265150.t1.1		2099386,2099742,2099903,2100192,2100898,2103234,2103540,2104020,2104488,2105034,2105293	2099616,2099809,2099965,2100656,2102955,2103336,2103623,2104260,2104888,2105106,2106123	
chr6	2106610	2107775	2107425	2107738	-	HFO12	Cre06.g265200.t1.2		2106610	2107775	replication linked H4; histone gene cluster XII (type 43AB)
chr6	2107966	2110003	2107993	2108402	+	HTR12	Cre06.g265250.t1.2		2107966	2110003	replication linked H3; histone gene cluster XII (type 43AB)
chr6	2110126	2113118	2110584	2112913	+	CSS2	Cre06.g265300.t1.2		2110126,2110563,2110998,2111338,2111878,2112131,2112728	2110365,2110731,2111135,2111679,2111981,2112516,2113118	expressed protein of unknown function; the gene interrupts histone gene cluster XII, as does highly similar and linked CSS1
chr6	2113120	2113875	2113355	2113755	-	HTA12	Cre06.g265350.t1.2		2113120	2113875	replication linked H2A; histone gene cluster XII (type 34BA)
chr6	2113986	2115031	2114030	2114493	+	HTB12	Cre06.g265400.t1.2		2113986	2115031	replication linked H2B; histone gene cluster XII (type 34BA)
chr6	2115649	2116825	2116480	2116793	-	HFO11B	Cre06.g265450.t1.2		2115649	2116825	replication linked H4; histone gene cluster XIB (type 43)
chr6	2116946	2117497	2117054	2117463	+	HTR11B	Cre06.g265500.t1.2		2116946	2117497	replication linked H3; histone gene cluster XIB (type 43)
chr6	2117499	2123655	2118100	2123558	-	Cre06.g265550.t1.2	Cre06.g265550.t1.2		2123385,2122988,2122594,2122193,2121758,2121416,2121178,2120930,2120561,2120197,2119611,2119122,2118713,2117499	2123655,2123089,2122672,2122295,2121862,2121518,2121230,2120977,2120673,2120295,2119894,2119276,2118804,2118499	
chr6	2124381	2127865	2124896	2127716	-	Cre06.g265602.t1.1	Cre06.g265602.t1.1		2127560,2127305,2126176,2125866,2125579,2124381	2127865,2127412,2127075,2126066,2125742,2125374	
chr6	2124381	2127865	2124896	2127716	-	Cre06.g265602.t2.1	Cre06.g265602.t2.1		2127560,2127305,2126437,2125866,2125579,2124381	2127865,2127412,2127075,2126066,2125742,2125374	
chr6	2127920	2145665	2128242	2145165	-	Cre06.g265652.t1.1	Cre06.g265652.t1.1		2143686,2143028,2142571,2142144,2141393,2138243,2137672,2137375,2136890,2136461,2135859,2135407,2134227,2133719,2133322,2132867,2130562,2130161,2129756,2129498,2129114,2127920	2145665,2143510,2142879,2142306,2141859,2141209,2137974,2137435,2137180,2136700,2136213,2135635,2135051,2133886,2133424,2133008,2132728,2130316,2129970,2129582,2129302,2128959	
chr6	2146846	2150863	2147147	2150306	+	Cre06.g265750.t1.1	Cre06.g265750.t1.1		2146846,2147337,2147586,2148133,2148799,2149174,2149448,2149693,2150078	2147167,2147438,2147709,2148466,2148898,2149245,2149514,2149845,2150863	
chr6	2151196	2153499	2151564	2152419	+	PRPL28	Cre06.g265800.t1.2		2151196,2151556,2152344	2151399,2152077,2153499	Chloroplast large ribosomal subunit protein L28
chr6	2153570	2159135	2154153	2158967	-	CTPA2	Cre06.g265850.t1.1		2158955,2157825,2157562,2157163,2156754,2156256,2155977,2155637,2155120,2154522,2153570	2159135,2158820,2157633,2157332,2156898,2156384,2156111,2155810,2155246,2154810,2154274	C-terminal peptidase, Tail-specific peptidase, possibly the D1 processing peptidase; contains a PDZ domain
chr6	2159296	2161977	2159448	2161803	+	Cre06.g265900.t1.2	Cre06.g265900.t1.2		2159296,2159609,2160019,2160534,2160952,2161366,2161655	2159523,2159666,2160082,2160685,2161067,2161433,2161977	
chr6	2161981	2193965	2162543	2193850	-	DHC3	Cre06.g265950.t1.1		2193775,2193571,2193038,2192545,2192113,2191716,2191477,2191010,2190081,2189176,2188766,2188397,2188024,2187690,2187177,2186632,2186305,2185706,2185354,2185045,2184793,2184477,2184224,2183737,2183380,2183169,2182837,2182035,2181649,2181254,2180871,2180359,2179896,2179562,2178880,2178490,2177407,2176969,2176591,2176195,2175760,2175382,2175148,2174670,2174052,2173714,2173267,2172809,2172503,2171992,2171505,2170949,2170567,2169851,2169457,2168975,2168478,2167943,2167482,2166834,2166188,2164083,2161981	2193965,2193688,2193275,2192785,2192268,2191847,2191590,2191162,2190821,2189874,2188932,2188543,2188189,2187839,2187250,2186809,2186360,2185904,2185455,2185116,2184873,2184637,2184302,2183952,2183499,2183279,2183013,2182567,2181779,2181450,2181017,2180524,2180086,2179690,2179390,2178667,2178309,2177182,2176820,2176412,2175997,2175503,2175233,2174935,2174229,2173887,2173488,2173057,2172664,2172236,2171622,2171156,2170715,2170307,2169605,2169191,2168754,2168321,2167828,2167176,2166500,2165983,2163854	Putative flagellar inner arm dynein heavy chain.  Has not been identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]; novel minor type found exclusively at the flagellar basal portion
chr6	2194020	2196845	2194820	2196464	-	Cre06.g266000.t1.2	Cre06.g266000.t1.2		2196392,2196098,2195598,2194020	2196845,2196220,2195924,2195414	
chr6	2198244	2205571	2199370	2204373	-	Cre06.g266052.t1.1	Cre06.g266052.t1.1		2205265,2204141,2203530,2203190,2202478,2201715,2200973,2200371,2198244	2205571,2204480,2203816,2203203,2202736,2202122,2201378,2200657,2200045	
chr6	2205672	2208373	2205790	2207621	+	Cre06.g266100.t1.1	Cre06.g266100.t1.1		2205672,2206234,2206503,2207018	2206027,2206362,2206829,2208373	
chr6	2208375	2211351	2208731	2210571	-	Cre06.g266150.t1.2	Cre06.g266150.t1.2		2210334,2209990,2209523,2208375	2211351,2210124,2209849,2209334	
chr6	2213592	2216441	2214516	2215817	-	Cre06.g266200.t1.2	Cre06.g266200.t1.2		2216299,2215589,2213592	2216441,2216086,2215278	
chr6	2213592	2216441	2214516	2216362	-	Cre06.g266200.t2.1	Cre06.g266200.t2.1		2216299,2213592	2216441,2215278	
chr6	2216489	2219611	2217598	2219421	-	Cre06.g266250.t1.2	Cre06.g266250.t1.2		2219187,2218851,2218384,2216489	2219611,2218985,2218710,2218201	
chr6	2219712	2224663	2219860	2223668	+	Cre06.g266276.t1.1	Cre06.g266276.t1.1		2219712,2221496,2221889,2222184,2222864,2223668	2219860,2221666,2221987,2222239,2223482,2224663	
chr6	2224665	2228151	2225616	2228047	-	Cre06.g266300.t1.2	Cre06.g266300.t1.2		2227699,2227425,2226629,2225852,2224665	2228151,2227523,2227153,2226287,2225616	
chr6	2228206	2235101	2228878	2234882	-	Cre06.g266350.t1.1	Cre06.g266350.t1.1		2234797,2232630,2231430,2230850,2230110,2229499,2228206	2235101,2234471,2232460,2231257,2230530,2229785,2229133	
chr6	2235212	2242633	2235359	2242610	+	HEL26	Cre06.g266383.t1.1		2235212,2235851,2236692,2237401,2237829,2238167,2238785,2239492,2239903,2240306,2240701,2240917,2241814,2242162,2242508,2242595	2235548,2236087,2237165,2237587,2237881,2238593,2239227,2239740,2240057,2240420,2240769,2241654,2241897,2242273,2242536,2242633	
chr6	2244232	2252663	2244331	2251996	+	Cre06.g266416.t1.1	Cre06.g266416.t1.1		2244232,2244493,2245682,2246018,2246500,2246972,2247529,2247976,2248265,2248752,2249122,2249777,2250155,2250386,2250854,2251210,2251606	2244352,2244721,2245749,2246213,2246662,2247198,2247695,2248064,2248469,2248853,2249483,2249918,2250258,2250575,2250973,2251290,2252663	
chr6	2253222	2255817	2253605	2255327	+	Cre06.g266450.t1.2	Cre06.g266450.t1.2		2253222,2253855,2254163,2254727	2253677,2253977,2254489,2255817	
chr6	2256886	2261521	2257484	2261398	-	Cre06.g266500.t1.2	Cre06.g266500.t1.2		2261218,2261008,2260696,2260030,2259640,2259093,2258614,2258402,2257970,2256886	2261521,2261084,2260867,2260220,2259723,2259280,2258747,2258449,2258119,2257709	
chr6	2261682	2263181	2261785	2263011	+	Cre06.g266550.t1.2	Cre06.g266550.t1.2		2261682,2261928,2262921	2261844,2262597,2263181	
chr6	2263286	2264221	2263882	2264195	-	HFO11	Cre06.g266600.t1.2		2263286	2264221	replication linked H4; histone gene cluster XI (type 43AB)
chr6	2264332	2265183	2264457	2264866	+	HTR11	Cre06.g266650.t1.2		2264332	2265183	replication linked H3; histone gene cluster XI (type 43AB)
chr6	2267206	2268401	2267882	2268282	-	HTA11	Cre06.g266700.t1.2		2267206	2268401	replication linked H2A; histone gene cluster XI (type 43AB)
chr6	2268532	2269433	2268566	2269029	+	HTB11	Cre06.g266750.t1.2		2268532	2269433	replication linked H2B; histone gene cluster XI (type 43AB)
chr6	2269678	2272605	2270049	2272307	+	Cre06.g266800.t1.1	Cre06.g266800.t1.1		2269678,2270361,2270719,2271149,2271480,2271751,2271993	2270166,2270447,2270859,2271323,2271595,2271829,2272605	
chr6	2272882	2280142	2273368	2279176	+	Cre06.g266850.t1.1	Cre06.g266850.t1.1		2272882,2274180,2274406,2274620,2274763,2275019,2277205	2273434,2274251,2274440,2274685,2274877,2277070,2280142	
chr6	2280146	2283851	2281144	2283781	-	Cre06.g266900.t1.1	Cre06.g266900.t1.1		2283611,2283418,2283032,2282719,2282386,2282005,2281543,2280146	2283851,2283468,2283161,2282781,2282400,2282133,2281814,2281292	
chr6	2283902	2291481	2285316	2290712	-	Cre06.g266950.t1.1	Cre06.g266950.t1.1		2291262,2290932,2290505,2289077,2288742,2287401,2283902	2291481,2291032,2290783,2290367,2288932,2288553,2287262	
chr6	2292972	2296753	2293088	2296142	+	Cre06.g267000.t1.1	Cre06.g267000.t1.1		2292972,2293221,2293387,2293798,2294706,2295145,2295489,2296067	2293131,2293276,2293488,2294338,2294906,2295200,2295623,2296753	
chr6	2296822	2300143	2296883	2299620	+	Cre06.g267050.t1.2	Cre06.g267050.t1.2		2296822,2297354,2297673,2298233,2298998,2299468	2297027,2297437,2297994,2298762,2299118,2300143	
chr6	2300152	2307151	2300733	2306927	-	SRP68	Cre06.g267100.t1.2		2306787,2306613,2306163,2305652,2304977,2304567,2304074,2303279,2302698,2302055,2301385,2300152	2307151,2306723,2306301,2305812,2305043,2304710,2304160,2303516,2302861,2302195,2301671,2301103	Conserved Hypothetical Protein. Similar to the SRP68 subunit of the Signal Recognition Particle. Involved in ER protein translocation.
chr6	2307216	2311081	2307414	2310853	-	Cre06.g267150.t1.2	Cre06.g267150.t1.2		2310753,2310416,2309923,2309719,2309393,2309027,2308662,2308255,2307818,2307216	2311081,2310558,2310015,2309787,2309530,2309068,2308745,2308380,2307904,2307606	
chr6	2311182	2312966	2311286	2312234	+	NUO21	Cre06.g267200.t1.2		2311182,2311511,2311679,2312154	2311401,2311588,2311771,2312966	NADH:ubiquinone oxidoreductase (Complex I) 13 kDa subunit, mitochondrial; gi 34334028 gb AAQ64641.1  [PMID: 15450959; PMID: 15710684] (similar to Neurospora crassa NUO20.9 protein, human NDUFS6).
chr6	2313306	2323241	2313983	2323196	-	MKP2	Cre06.g267250.t1.1		2323004,2322738,2322199,2321837,2313306	2323241,2322873,2322341,2321923,2321621	MKP2; Map Kinase Phosphatase Homolog 2; DSP2; Dual Specificity Protein Phosphatase Homolog 2
chr6	2323292	2327441	2323784	2327407	-	Cre06.g267300.t1.2	Cre06.g267300.t1.2		2327392,2326802,2326513,2326206,2325840,2325438,2324966,2324569,2324190,2323292	2327441,2327209,2326592,2326290,2325945,2325655,2325141,2324680,2324404,2323944	
chr6	2327551	2333442	2327733	2332290	+	Cre06.g267350.t1.2	Cre06.g267350.t1.2		2327551,2328018,2328321,2328662,2328941,2329597,2329981,2330436,2330794,2331111,2331524,2332155	2327827,2328137,2328400,2328775,2329078,2329785,2330115,2330556,2330914,2331231,2331646,2333442	
chr6	2334932	2345740	2335514	2342966	+	Cre06.g267400.t1.2	Cre06.g267400.t1.2		2334932,2335770,2336096,2336287,2336564,2337897,2338062,2338298,2338765,2338941,2339255	2335551,2335936,2336120,2336388,2337789,2337942,2338129,2338426,2338834,2339068,2345740	null-allele passenger mutation was isolated (PMID 29743196)
chr6	2346662	2351123	2348325	2350176	+	Cre06.g267450.t1.2	Cre06.g267450.t1.2		2346662,2348236,2349167,2350176	2346730,2348982,2349260,2351123	
chr6	2348367	2350431	2349434	2350242	-	Cre06.g267476.t1.1	Cre06.g267476.t1.1		2350127,2348367	2350431,2349643	
chr6	2351337	2353371	2351824	2353028	-	Cre06.g267500.t1.2	Cre06.g267500.t1.2		2353202,2352921,2351337	2353371,2353078,2352230	
chr6	2353419	2357041	2353910	2356745	-	BBS5	Cre06.g267550.t1.2		2356622,2356017,2355595,2355158,2354822,2354620,2354324,2353419	2357041,2356182,2355762,2355342,2354914,2354676,2354409,2354091	Flagellar protein, component of BBSome that targets membrane proteins to cilia; probably mediates membrane association of the BBSome via its pleckstrin homology domain
chr6	2357352	2364003	2357748	2362345	+	LCYE1	Cre06.g267600.t1.2		2357352,2358085,2358787,2359149,2359463,2359717,2359912,2360324,2360721,2360940,2361425,2362190	2358012,2358241,2358911,2359265,2359524,2359761,2360025,2360570,2360780,2361026,2361743,2364003	lycopene epsilon cyclase (CrtL-e) (LEC) [PMID: 16143839], chloroplast precursor
chr6	2357352	2363755	2357748	2362345	+	LCYE1	Cre06.g267600.t2.1		2357352,2358085,2358787,2359149,2359463,2359717,2359912,2360324,2360721,2360940,2361425,2362190	2358012,2358241,2358911,2359265,2359524,2359761,2360025,2360570,2360780,2361026,2361743,2363755	lycopene epsilon cyclase (CrtL-e) (LEC) [PMID: 16143839], chloroplast precursor
chr6	2365005	2369166	2365222	2367638	+	Cre06.g267650.t1.2	Cre06.g267650.t1.2		2365005,2365377,2365602,2365777,2366318,2367072,2367461	2365287,2365524,2365667,2365926,2366653,2367239,2369166	
chr6	2369519	2377384	2370335	2377182	-	SPP1B	Cre06.g267700.t1.2		2377005,2376568,2375978,2375564,2375072,2374681,2374326,2374043,2373784,2373356,2373082,2372800,2372284,2371852,2371386,2370836,2369519	2377384,2376681,2376094,2375774,2375262,2374805,2374413,2374087,2373882,2373505,2373139,2372911,2372446,2371959,2371513,2370917,2370626	SppA, protease IV, signal peptide peptidase, serine endopeptidase of S49 family (ClpP clan); contains 2 S49 domains, of which the second only appears functional; probably associated with thylakoid membrane and involved in cleavage of membrane proteins or signal peptide; called SPPA1-2 in Sokolenko (2005), Physiol. Plantarum 123:391; linked to SPP1C in MT locus
chr6	2378925	2383570	2379304	2382705	+	Cre06.g267750.t1.2	Cre06.g267750.t1.2		2378925,2379700,2380048,2381025,2381382,2381728,2382152,2382561	2379404,2379858,2380892,2381186,2381524,2381934,2382341,2383570	
chr6	2383575	2386324	2384284	2386236	-	MML1	Cre06.g267800.t1.1		2386131,2385996,2385544,2384659,2383575	2386324,2386057,2385856,2385330,2384452	
chr6	2383575	2386324	2384284	2386236	-	MCP8	Cre06.g267800.t2.1		2386131,2385996,2385544,2384659,2383575	2386324,2386057,2385844,2385330,2384452	
chr6	2386445	2390589	2386558	2390341	+	PLS1	Cre06.g267850.t1.2		2386445,2387363,2387811,2388146,2388356,2388693,2389041,2389783	2387082,2387532,2387851,2388187,2388481,2388757,2389401,2390589	
chr6	2390694	2394246	2391581	2394035	-	Cre06.g267900.t1.2	Cre06.g267900.t1.2		2393874,2393567,2393151,2392553,2392052,2390694	2394246,2393695,2393237,2392686,2392142,2391630	
chr6	2394299	2395124	2394684	2395093	-	HTR10	Cre06.g267950.t1.2		2394299	2395124	replication linked H3; histone gene cluster X (type 34AB)
chr6	2395315	2395956	2395356	2395669	+	HFO10	Cre06.g268000.t1.2		2395315	2395956	replication linked H4; histone gene cluster X (type 34AB)
chr6	2396169	2397374	2396836	2397236	-	HTA10	Cre06.g268050.t1.2		2396169	2397374	replication linked H2A; histone gene cluster X (type 34AB)
chr6	2397495	2398176	2397522	2397985	+	HTB10	Cre06.g268100.t1.2		2397495	2398176	replication linked H2B; histone gene cluster X (type 34AB)
chr6	2398178	2405393	2398517	2405166	-	CNK3	Cre06.g268150.t1.1		2405109,2404830,2404460,2404011,2403600,2403345,2403025,2402729,2402534,2402289,2401832,2401561,2401367,2400988,2400401,2400036,2399652,2399363,2399003,2398178	2405393,2404907,2404572,2404102,2403673,2403411,2403120,2402808,2402592,2402414,2402038,2401693,2401468,2401149,2400487,2400215,2399899,2399507,2399179,2398799	NimA related kinase homolog 3 [gi:34334395, PMID: 15068267]
chr6	2405549	2408899	2405693	2408468	+	TGD1	Cre06.g268200.t1.2		2405549,2406035,2406346,2406725,2407224,2407742,2408303	2405919,2406136,2406455,2406877,2407347,2407887,2408899	Similar to permease domain of putative lipid transfer machine
chr6	2409089	2412734	2409917	2412624	-	Cre06.g268228.t1.2	Cre06.g268228.t1.2		2412527,2411921,2411516,2410524,2410310,2409089	2412734,2412077,2411756,2411225,2410369,2410229	
chr6	2412809	2413624	2413122	2413585	-	HTB9	Cre06.g268250.t1.2		2412809	2413624	replication linked H2B; histone gene cluster IX (type 43AB)
chr6	2413795	2414526	2413868	2414262	+	HTA9	Cre06.g268300.t1.2		2413795	2414526	replication linked H2A; histone gene cluster IX (type 43AB)
chr6	2415189	2416014	2415569	2415978	-	HTR9	Cre06.g268350.t1.2		2415189	2416014	replication linked H3; histone gene cluster IX (type 43AB)
chr6	2416195	2416626	2416243	2416556	+	HFO9	Cre06.g268400.t1.2		2416195	2416626	replication linked H4; histone gene cluster IX (type 43AB)
chr6	2416700	2424364	2417113	2424093	-	Cre06.g268450.t1.1	Cre06.g268450.t1.1		2424200,2424055,2423552,2422844,2422094,2421318,2420927,2420523,2419893,2419333,2418448,2417899,2417475,2416700	2424364,2424096,2423615,2422900,2422189,2421464,2421054,2420695,2420114,2419475,2419122,2418000,2417542,2417225	
chr6	2424465	2429296	2424695	2428443	+	Cre06.g268501.t1.1	Cre06.g268501.t1.1		2424465,2425474,2425877,2426538,2426986,2427490,2428006	2425312,2425582,2426350,2426701,2427282,2427794,2429296	
chr6	2429365	2437056	2429894	2435832	+	CGL121	Cre06.g268550.t1.1		2429365,2429820,2430537,2431411,2431742,2432472,2432862,2433296,2433657,2433943,2434294,2434746,2435116,2435352,2435652	2429483,2429990,2431104,2431544,2431828,2432577,2432989,2433320,2433733,2434106,2434389,2434892,2435183,2435425,2437056	Conserved in the Green Lineage
chr6	2429405	2437056	2429894	2435832	+	CGL121	Cre06.g268550.t2.1		2429405,2429815,2430537,2431411,2431742,2432472,2432862,2433296,2433657,2433943,2434294,2434746,2435116,2435352,2435652	2429483,2429990,2431104,2431544,2431828,2432577,2432989,2433320,2433733,2434106,2434389,2434892,2435183,2435425,2437056	Conserved in the Green Lineage
chr6	2438365	2442450	2438725	2441260	+	NAB1	Cre06.g268600.t1.2		2438365,2439162,2439511,2440390,2440785,2441142	2438833,2439290,2439643,2440532,2440897,2442450	Nucleic acid binding protein; RNA binding protein involved in the light-regulated differential expression of the light-harvesting antenna of Chlamydomonas reinhardtii [PMID: 16284312, Genbank entry AY157846]
chr6	2442503	2445954	2443059	2445950	-	FAP279	Cre06.g268650.t1.1		2445725,2445417,2445196,2444888,2444048,2443468,2442503	2445954,2445494,2445272,2444945,2444356,2443825,2443160	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr6	2442503	2445944	2443059	2445484	-	FAP279	Cre06.g268650.t2.1		2445725,2445470,2445417,2445196,2444888,2444048,2443468,2442503	2445944,2445494,2445426,2445272,2444945,2444356,2443825,2443160	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr6	2445992	2451534	2446374	2451140	-	Cre06.g268700.t1.1	Cre06.g268700.t1.1		2451047,2450918,2450619,2450317,2449978,2449754,2449531,2449282,2449035,2448673,2448283,2447958,2447757,2447512,2447265,2446894,2446671,2445992	2451534,2450950,2450798,2450502,2450067,2449828,2449626,2449368,2449185,2448896,2448532,2448133,2447858,2447622,2447396,2447085,2446798,2446528	
chr6	2451731	2459294	2452518	2459117	-	MME1	Cre06.g268750.t1.2		2459038,2458609,2458334,2458097,2457541,2456889,2456580,2456385,2456034,2455695,2455243,2454893,2454330,2453940,2453627,2453262,2452900,2451731	2459294,2458674,2458400,2458190,2457635,2457003,2456634,2456440,2456139,2455831,2455363,2455042,2454630,2454015,2453696,2453372,2453021,2452611	Malic enzyme, NAD-dependent (EC 1.1.1.39); malate dehydrogenase (decarboxylating); probable mitochondrial location based on Target-P prediction
chr6	2459435	2474786	2459517	2473266	+	IFT139	Cre06.g268800.t1.2		2459435,2459757,2460334,2461287,2461758,2462155,2462504,2462909,2463298,2463861,2464453,2464905,2465238,2465899,2466398,2466789,2467239,2467685,2468085,2468574,2468960,2469449,2469994,2470510,2470862,2471315,2472095,2472642,2473116	2459679,2459891,2460468,2461418,2461910,2462221,2462619,2463013,2463459,2464034,2464599,2464961,2465483,2466054,2466499,2466920,2467340,2467819,2468174,2468713,2469167,2469637,2470118,2470590,2471060,2471437,2472265,2472815,2474786	Flagellar Associated Protein, component of IFT-A particle; found in the flagellar proteome [PMID: 15998802]
chr6	2474789	2479504	2476373	2479110	-	Cre06.g268850.t1.1	Cre06.g268850.t1.1		2479061,2478806,2477766,2477351,2474789	2479504,2478919,2478544,2477477,2477167	
chr6	2474789	2479504	2476373	2479110	-	Cre06.g268850.t2.1	Cre06.g268850.t2.1		2479061,2478806,2477766,2477351,2474789	2479504,2478919,2478481,2477477,2477167	
chr6	2481375	2487339	2481415	2485912	+	Cre06.g268900.t1.2	Cre06.g268900.t1.2		2481375,2481679,2481954,2484746,2485390,2485801	2481591,2481855,2484582,2485091,2485496,2487339	
chr6	2487359	2489604	2489298	2489494	-	Cre06.g268925.t1.1	Cre06.g268925.t1.1		2487359	2489604	
chr6	2489715	2497206	2490651	2496445	+	Cre06.g268950.t1.2	Cre06.g268950.t1.2		2489715,2490554,2490925,2491107,2491707,2491899,2492216,2492563,2492747,2493088	2490325,2490658,2490944,2491583,2491752,2491966,2492362,2492632,2492874,2497206	
chr6	2497255	2500546	2497374	2497630	+	Cre06.g268976.t1.1	Cre06.g268976.t1.1		2497255	2500546	
chr6	2501005	2503762	2501880	2503390	+	Cre06.g269000.t1.2	Cre06.g269000.t1.2		2501005,2501520,2501852,2502272,2502612,2502850	2501412,2501630,2501896,2502330,2502686,2503762	
chr6	2504171	2514874	2504972	2514803	-	TIC62	Cre06.g269050.t1.2		2514711,2514514,2514179,2513915,2512401,2512055,2511495,2510867,2510455,2509894,2509540,2509098,2508708,2508057,2507733,2507297,2506954,2506520,2505998,2505652,2505288,2504171	2514874,2514593,2514294,2513961,2512587,2512149,2511664,2511018,2510538,2509971,2509614,2509217,2508788,2508170,2507864,2507455,2507049,2506762,2506252,2505719,2505419,2505093	Short chain dehydrogenase belonging to the extended family [PMID: 1223552]. Similarity to the N-terminal domain of Tic62 [PMID: 17374152]., Similar to Ycf39-like proteins from Synechocystis sp. PCC 683 (BAA1812), Cyanophora paradoxa (AAA81188) and Guillardia theta
chr6	2514975	2517446	2515076	2516802	+	Cre06.g269100.t1.1	Cre06.g269100.t1.1		2514975,2515788,2516113,2516615	2515610,2515859,2516432,2517446	Related to GCN5
chr6	2518266	2522644	2519348	2521757	-	Cre06.g269150.t1.1	Cre06.g269150.t1.1		2522184,2521562,2521126,2518266	2522644,2521770,2521317,2520887	
chr6	2523007	2546244	2524982	2545884	-	CYA7	Cre06.g269200.t1.1		2545537,2544607,2543999,2543042,2542500,2541920,2541591,2540840,2540488,2540186,2539683,2538215,2537443,2537106,2536673,2536320,2535583,2534789,2534315,2533973,2533307,2532857,2532563,2531730,2531280,2530818,2530376,2526731,2526212,2525915,2523007	2546244,2544748,2544088,2543273,2542720,2542081,2541658,2541237,2540538,2540211,2539766,2538305,2537944,2537194,2536788,2536391,2536101,2535372,2534439,2534040,2533491,2532985,2532629,2531895,2531335,2530973,2530670,2530103,2526397,2526059,2525504	possible guanylate or adenylate cyclase
chr6	2523007	2538874	2524982	2538559	-	CYA7	Cre06.g269200.t2.1		2538487,2538215,2537443,2537106,2536673,2536320,2535583,2534789,2534315,2533973,2533307,2532857,2532563,2531730,2531280,2530818,2530376,2526731,2526212,2525915,2523007	2538874,2538305,2537944,2537194,2536788,2536391,2536101,2535372,2534439,2534040,2533491,2532985,2532629,2531895,2531335,2530973,2530670,2530103,2526397,2526059,2525504	possible guanylate or adenylate cyclase
chr6	2539349	2546244	2539643	2545884	-	CYA7	Cre06.g269200.t3.1		2545537,2544607,2543999,2543042,2542500,2541920,2541591,2540840,2540488,2540186,2539349	2546244,2544748,2544088,2543273,2542720,2542081,2541658,2541237,2540538,2540211,2539766	possible guanylate or adenylate cyclase
chr6	2546299	2550724	2546822	2550682	-	Cre06.g269250.t1.2	Cre06.g269250.t1.2		2550476,2550261,2549916,2549516,2549123,2548919,2548615,2548196,2547799,2547377,2546299	2550724,2550279,2549969,2549581,2549245,2548998,2548654,2548360,2547972,2547448,2547077	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr6	2550825	2555260	2551677	2554239	+	CGL120	Cre06.g269300.t1.2		2550825,2551665,2552375,2552739,2553192,2553825	2551085,2551780,2552550,2552848,2553468,2555260	
chr6	2563626	2570391	2563747	2570225	-	Cre06.g269350.t1.2	Cre06.g269350.t1.2		2569891,2569461,2569111,2568505,2567744,2567246,2566700,2566414,2565970,2565635,2565170,2564739,2563626	2570391,2569672,2569331,2568777,2568203,2567398,2566933,2566488,2566074,2565759,2565352,2564900,2564393	
chr6	2570492	2582469	2570608	2581543	+	Cre06.g269400.t1.1	Cre06.g269400.t1.1		2570492,2570804,2571342,2571793,2572250,2572465,2573191,2574323,2574741,2579597	2570696,2570871,2571509,2572032,2572308,2572879,2574021,2574410,2579282,2582469	
chr6	2583399	2586491	2583451	2585663	+	EIF3G	Cre06.g269450.t1.2		2583399,2583786,2584072,2584723,2585262,2585566	2583643,2583982,2584162,2584896,2585362,2586491	putative eukaryotic translation initiation factor 3 subunit
chr6	2600816	2604261	2602358	2603970	-	Cre06.g269544.t1.2	Cre06.g269544.t1.2		2603771,2603125,2600816	2604261,2603614,2602524	
chr6	2600816	2604261	2603765	2603970	-	Cre06.g269544.t2.1	Cre06.g269544.t2.1		2600816	2604261	
chr6	2604372	2606413	2604834	2606068	+	COQ9	Cre06.g269550.t1.1		2604372,2605382,2605771	2605050,2605483,2606413	Putative ubiquinone biosynthesis protein, mitochondrial precursor; similar to yeast ubiquinone biosynthesis protein COQ9(gi 74644909)
chr6	2606422	2607271	2606576	2607239	-	Cre06.g269601.t1.1	Cre06.g269601.t1.1		2607153,2606422	2607271,2606922	
chr6	2607939	2610911	2608958	2610825	-	Cre06.g269650.t1.2	Cre06.g269650.t1.2		2610583,2609975,2609449,2607939	2610911,2610362,2609619,2609153	
chr6	2610966	2616181	2611695	2615878	-	Cre06.g269700.t1.2	Cre06.g269700.t1.2		2615867,2614740,2614303,2613305,2613043,2612640,2612386,2612111,2610966	2616181,2615707,2614532,2614023,2613165,2612703,2612436,2612249,2611814	
chr6	2616705	2621196	2619248	2621093	-	TRX15	Cre06.g269752.t1.2		2620908,2620732,2620132,2619783,2616705	2621196,2620794,2620259,2619907,2619557	
chr6	2621354	2630913	2621461	2630443	+	Cre06.g269801.t1.1	Cre06.g269801.t1.1		2621354,2622020,2622490,2623334,2623809,2624297,2624652,2624996,2625514,2625994,2626195,2626836,2627151,2627657,2627912,2628338,2628853,2629419,2629890	2621622,2622216,2623136,2623439,2623933,2624421,2624733,2625132,2625646,2626061,2626412,2626924,2627273,2627740,2628004,2628468,2629246,2629579,2630913	
chr6	2631376	2634521	2632055	2633748	-	Cre06.g269850.t1.1	Cre06.g269850.t1.1		2633601,2631376	2634521,2632838	
chr6	2633396	2640331	2634320	2640141	-	Cre06.g269865.t1.2	Cre06.g269865.t1.2		2639586,2639166,2638532,2637940,2637451,2636999,2636622,2636303,2635906,2635563,2634792,2633396	2640331,2639259,2638939,2638109,2637581,2637184,2636694,2636380,2636046,2635712,2635208,2634362	
chr6	2634676	2640331	2634767	2640141	-	Cre06.g269865.t2.1	Cre06.g269865.t2.1		2639586,2639166,2638532,2637940,2637451,2636999,2636622,2636303,2635906,2635563,2634676	2640331,2639259,2638939,2638109,2637581,2637184,2636694,2636380,2636046,2635712,2635208	
chr6	2634676	2640331	2634767	2640141	-	Cre06.g269865.t3.1	Cre06.g269865.t3.1		2639586,2639166,2638532,2637940,2637451,2636999,2636622,2636303,2635906,2635563,2634676	2640331,2639259,2638939,2638109,2637581,2637181,2636694,2636380,2636046,2635712,2635208	
chr6	2640786	2643661	2641924	2643299	-	Cre06.g269908.t1.1	Cre06.g269908.t1.1		2643201,2640786	2643661,2642024	
chr6	2643756	2650925	2643872	2649916	+	CDC48	Cre06.g269950.t1.2		2643756,2643988,2644231,2644580,2644985,2645741,2646104,2646654,2647041,2647544,2648077,2648493,2649059,2649346,2649682	2643904,2644159,2644362,2644711,2645137,2645873,2646234,2646740,2647234,2647745,2648316,2648879,2649199,2649429,2650925	Protein involved in ubiquitin-dependent degradation of ER-bound substrates; Conserved AAA domain; Flagellar Associated Protein; higher plant homologue is involved in formation of ER in the cell division plane during cytokinesis (PMID: 12427991); CDC48 (p97) functions as an hexameric complex presenting ER-bound substrates either to the ubiquitination machinery (Ufd2) for degradation, or to Ufd3 and deubiquitiating enzymes for repair and recycling (PMID: 16793541)
chr6	2651162	2655733	2651589	2655458	+	Cre06.g270000.t1.1	Cre06.g270000.t1.1		2651162,2651903,2654489	2651694,2654224,2655733	
chr6	2656642	2660763	2656785	2660300	+	Cre06.g270050.t1.1	Cre06.g270050.t1.1		2656642,2657121,2659448	2656971,2659235,2660763	
chr6	2660766	2669981	2661427	2669955	-	SBE2	Cre06.g270100.t1.1		2669849,2669464,2669124,2668713,2668333,2668004,2667635,2667325,2667048,2666458,2666087,2665663,2665277,2664684,2664419,2664170,2663780,2663404,2663096,2662666,2662224,2661934,2660766	2669981,2669711,2669243,2668745,2668375,2668086,2667772,2667424,2667135,2666653,2666158,2665804,2665411,2664831,2664482,2664237,2663885,2663518,2663176,2662778,2662388,2662050,2661556	catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position
chr6	2670238	2673248	2670879	2673118	-	MITC13	Cre06.g270150.t1.1		2673074,2672891,2672707,2672469,2672036,2671690,2671259,2670238	2673248,2672978,2672777,2672544,2672204,2671843,2671385,2671044	
chr6	2673352	2678873	2673602	2677867	+	Cre06.g270200.t1.1	Cre06.g270200.t1.1		2673352,2673916,2674459,2674883,2675208,2675439,2675702,2676292,2676772,2677173,2677523,2677741	2673803,2674011,2674551,2675008,2675295,2675482,2675875,2676456,2676939,2677326,2677593,2678873	
chr6	2679345	2683373	2679705	2683335	+	CDC45	Cre06.g270250.t1.1		2679345,2679931,2680181,2680562,2681080,2681362,2681608,2681880,2682143,2682341,2682608,2682852,2683143	2679843,2680026,2680397,2680901,2681209,2681471,2681723,2682004,2682231,2682433,2682734,2683004,2683373	fungal and metazoan CDC45 homolog. ts-lethal mutations block DNA replication (PMID 25336509)
chr6	2683376	2684901	2683487	2683719	-	Cre06.g270276.t1.1	Cre06.g270276.t1.1		2684865,2684637,2683376	2684901,2684727,2684461	
chr6	2684956	2688531	2685269	2688283	-	Cre06.g270300.t1.1	Cre06.g270300.t1.1		2687536,2687141,2686616,2685920,2684956	2688531,2687311,2686965,2686363,2685723	
chr6	2688662	2695407	2688836	2693031	+	AMYB2	Cre06.g270350.t1.1		2688662,2689469,2689817,2690169,2690348,2690742,2691051,2691367,2691756,2692389	2689061,2689543,2689923,2690223,2690489,2690852,2691133,2691514,2692129,2695407	Belongs to glycoside hydrolase family 14; alpha 1,4-glucan maltohydrolase (EC 3.2.1.2), hydrolyzes the alpha 1,4-glucosidic linkages of starch from the nonreducing ends.; null-allele mutant was isolated (PMID 29743196)
chr6	2695462	2699863	2695870	2699502	+	Cre06.g270400.t1.2	Cre06.g270400.t1.2		2695462,2695964,2696242,2696451,2696639,2697101,2697732,2698418,2699169	2695882,2696065,2696297,2696511,2696874,2697353,2698202,2698522,2699863	
chr6	2700022	2706956	2700370	2704269	+	Cre06.g270450.t1.1	Cre06.g270450.t1.1		2700022,2700287,2700637,2702449,2702814	2700116,2700411,2702212,2702595,2706956	null-allele mutant was isolated (PMID 29743196)
chr6	2707552	2715912	2708276	2714786	+	Cre06.g270500.t1.1	Cre06.g270500.t1.1		2707552,2708549,2708803,2709079,2709432,2709975,2710221,2710905,2711298,2711792,2712199,2712657,2712903,2713434,2713682,2714313	2708400,2708589,2708896,2709223,2709555,2710083,2710688,2711089,2711548,2711980,2712313,2712733,2713246,2713493,2714104,2715912	null-allele mutant was isolated (PMID 29743196)
chr6	2715926	2721507	2718191	2721347	-	Cre06.g270550.t1.2	Cre06.g270550.t1.2		2721165,2720455,2720136,2719650,2718992,2718668,2715926	2721507,2720673,2720230,2719916,2719392,2718759,2718372	
chr6	2721642	2726347	2721796	2725846	+	Cre06.g270600.t1.1	Cre06.g270600.t1.1		2721642,2722494	2722290,2726347	
chr6	2726672	2728243	2727316	2728011	-	MRPL43	Cre06.g270650.t1.2		2727952,2727718,2726672	2728243,2727824,2727555	
chr6	2728382	2736863	2728467	2735991	+	Cre06.g270700.t1.1	Cre06.g270700.t1.1		2728382,2728750,2729019,2729341,2730573,2730904,2731542,2732240,2735576	2728636,2728841,2729190,2730345,2730718,2731326,2732012,2735409,2736863	
chr6	2736912	2739383	2736937	2738879	+	Cre06.g270726.t1.1	Cre06.g270726.t1.1		2736912,2737165,2737585,2738717	2737094,2737447,2737927,2739383	
chr6	2739396	2745069	2739880	2744848	-	Cre06.g270750.t1.1	Cre06.g270750.t1.1		2744788,2744540,2743780,2743386,2742957,2742546,2742256,2741928,2740810,2740341,2739396	2745069,2744718,2743975,2743547,2743112,2742681,2742359,2742096,2741760,2740639,2740132	
chr6	2745217	2749073	2745321	2748565	+	Cre06.g270800.t1.2	Cre06.g270800.t1.2		2745217,2745671,2746058,2746439,2746719,2746995,2747495,2748062	2745417,2745773,2746164,2746523,2746786,2747166,2747758,2749073	
chr6	2749076	2759451	2749450	2759337	-	Cre06.g270850.t1.2	Cre06.g270850.t1.2		2759250,2758750,2757700,2756852,2755731,2755326,2754730,2754188,2753740,2753082,2752569,2752090,2751671,2750665,2749076	2759451,2759045,2758537,2757372,2756658,2755507,2755003,2754331,2753883,2753265,2752825,2752173,2751796,2751241,2750472	Putative SNF2/RAD54 family DNA repair and recombination protein, ChromDB CHR3411
chr6	2759602	2765573	2759728	2765316	+	SUV3	Cre06.g270900.t1.2		2759602,2760741,2760992,2761885,2762260,2762756,2763530,2764024,2764690,2765028	2760479,2760823,2761525,2761959,2762421,2763325,2763687,2764451,2764838,2765573	Putative mitochondrial DNA/RNA helicase SUV3 involved in 3'-5'RNA decay. See PUBMED 12466530 and 10570936.
chr6	2765827	2770173	2765912	2768042	+	Cre06.g270950.t1.2	Cre06.g270950.t1.2		2765827,2766580,2767522	2766278,2767157,2770173	
chr6	2770222	2775101	2770353	2773011	+	Cre06.g271000.t1.2	Cre06.g271000.t1.2		2770222,2771236,2772236,2772857	2770704,2772005,2772622,2775101	
chr6	2775925	2780621	2776616	2780205	-	URN1	Cre06.g271050.t1.1		2780153,2779467,2779113,2778612,2778424,2778271,2777917,2777688,2777473,2776964,2775925	2780621,2779606,2779232,2778727,2778451,2778310,2778008,2777735,2777544,2777105,2776741	
chr6	2780728	2785308	2781010	2783806	+	CDKG1	Cre06.g271100.t1.1		2780728,2782056,2782518,2782785,2782968,2783399,2783674	2781193,2782339,2782641,2782846,2783220,2783524,2785308	Chlamydomonas specific; SDSTIRE motif.  Novel CDK subfamily
chr6	2785582	2796623	2785825	2796296	+	FAP74	Cre06.g271150.t1.1		2785582,2786218,2786868,2787415,2787791,2788300,2788738,2789239,2789633,2790031,2790406,2790939,2791480,2791924,2792172,2792508,2793091,2794526,2794882,2795399	2785909,2786567,2787096,2787569,2787950,2788572,2789062,2789450,2789772,2790186,2790550,2791241,2791695,2792022,2792267,2792839,2794285,2794638,2795224,2796623	found in the flagellar proteome [PMID: 15998802]; HC3 of C1d projection on central pair (PubMed ID:20421426 DiPetrillo and Smith, 2010); together with FAP221, FAP46, FAP54, C1d-87 and calmodulin, form a single complex in the C1d projection
chr6	2797192	2800353	2797341	2800266	+	Cre06.g271188.t1.2	Cre06.g271188.t1.2		2797192,2798673,2798916,2799438	2798413,2798756,2799217,2800353	
chr6	2800482	2807883	2800784	2807417	+	PNO1	Cre06.g271200.t1.2		2800482,2801185,2801543,2802087,2802444,2802766,2803147,2803714,2804065,2804526,2804953,2805219,2805456,2805859,2806124,2806578,2806958,2807376	2800822,2801314,2801626,2802164,2802554,2802861,2803254,2803890,2804199,2804620,2805073,2805299,2805566,2805912,2806240,2806697,2807030,2807883	CoA-disulfide reductase; flavoprotein, putative NADH oxidase, bacterial type
chr6	2807886	2808431	2807907	2808316	-	HTR8	Cre06.g271250.t1.2		2807886	2808431	replication linked H3; histone gene cluster VIII (type 34AB)
chr6	2808532	2809243	2808569	2808882	+	HFO8	Cre06.g271300.t1.2		2808532	2809243	replication linked H4; histone gene cluster VIII (type 34AB)
chr6	2809256	2810311	2809801	2810195	-	HTA8	Cre06.g271350.t1.2		2809256	2810311	replication linked H2A; histone gene cluster VIII (type 34AB)
chr6	2810422	2810953	2810467	2810930	+	HTB8	Cre06.g271376.t1.1		2810422,2810543	2810494,2810953	replication linked H2B; histone gene cluster VIII (type 34AB)
chr6	2810955	2814850	2811477	2814698	-	Cre06.g271400.t1.1	Cre06.g271400.t1.1		2814622,2814369,2814169,2813884,2813517,2813257,2813051,2812680,2812312,2811926,2810955	2814850,2814484,2814228,2814006,2813645,2813331,2813102,2812779,2812372,2812048,2811606	Phosphoglycolate phosphatase (EC 3.1.3.18), chloroplast precursor; similar to Chlamydomonas PGP1
chr6	2814942	2826646	2814986	2825774	+	Cre06.g271450.t1.1	Cre06.g271450.t1.1		2814942,2815097,2815704,2816185,2816466,2816843,2817056,2817500,2817768,2818185,2818546,2819133,2819379,2819644,2820056,2820504,2820786,2821944,2822298,2822630,2823122,2823689,2824439,2825090	2815016,2815279,2815824,2816222,2816539,2816897,2817214,2817546,2817856,2818327,2818851,2819188,2819466,2819721,2820196,2820603,2821790,2822020,2822399,2822897,2823498,2824156,2824786,2826646	
chr6	2826792	2828303	2826896	2828037	+	Cre06.g271500.t1.2	Cre06.g271500.t1.2		2826792,2827558,2827945	2826955,2827589,2828303	
chr6	2829032	2830553	2829253	2830321	+	Cre06.g271526.t1.1	Cre06.g271526.t1.1		2829032,2829648,2830264	2829337,2829698,2830553	
chr6	2830672	2832063	2830738	2831434	+	Cre06.g271550.t1.2	Cre06.g271550.t1.2		2830672,2830965,2831144	2830870,2831028,2832063	
chr6	2832140	2834871	2833135	2834837	-	Cre06.g271600.t1.1	Cre06.g271600.t1.1		2834754,2834197,2833842,2833502,2832140	2834871,2834252,2833882,2833559,2833290	
chr6	2834992	2837033	2835146	2836430	+	Cre06.g271650.t1.1	Cre06.g271650.t1.1		2834992,2835464,2835800,2836035	2835312,2835504,2835857,2837033	
chr6	2837082	2844093	2837175	2843530	+	Cre06.g271700.t1.1	Cre06.g271700.t1.1		2837082,2837720,2838044,2838484,2840689,2841109,2841481,2842179,2842536,2842895,2843336	2837309,2837861,2838301,2838604,2840785,2841163,2841762,2842327,2842650,2842952,2844093	
chr6	2844116	2845541	2844495	2845514	-	Cre06.g271750.t1.2	Cre06.g271750.t1.2		2845268,2844116	2845541,2845041	
chr6	2844116	2845541	2844495	2845514	-	Cre06.g271750.t2.1	Cre06.g271750.t2.1		2845274,2844116	2845541,2845041	
chr6	2845591	2849661	2846183	2849576	-	LCI36	Cre06.g271800.t1.2		2849505,2849224,2848913,2848605,2848261,2847882,2847407,2846982,2845591	2849661,2849278,2849074,2848646,2848328,2847993,2847494,2847063,2846253	Low-CO2 inducible gene related to Arabidopsis senescence-associated SWEET glucose efflux transporter; predicted to have 11 transmembrane domains and two MtN3/saliva family domains (pfam03083). Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr6	2845591	2849661	2846253	2849576	-	LCI36	Cre06.g271800.t2.1		2849505,2849224,2848913,2848605,2848261,2847882,2847407,2846982,2846563,2845591	2849661,2849278,2849074,2848646,2848328,2847993,2847494,2847063,2846699,2846253	Low-CO2 inducible gene related to Arabidopsis senescence-associated SWEET glucose efflux transporter; predicted to have 11 transmembrane domains and two MtN3/saliva family domains (pfam03083). Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr6	2849835	2857831	2850319	2857330	-	Cre06.g271850.t1.2	Cre06.g271850.t1.2		2857627,2856945,2856661,2856264,2855620,2855258,2854855,2854245,2853679,2853269,2852910,2851697,2851332,2850797,2849835	2857831,2857353,2856731,2856404,2855879,2855392,2854972,2854406,2853936,2853400,2853048,2851812,2851391,2851120,2850508	
chr6	2857942	2861241	2858559	2860549	+	Cre06.g271900.t1.2	Cre06.g271900.t1.2		2857942,2858494,2858820,2859096,2859429,2859692,2860159,2860513	2858223,2858566,2858920,2859248,2859503,2859904,2860239,2861241	
chr6	2858067	2861244	2858559	2860549	+	Cre06.g271900.t2.1	Cre06.g271900.t2.1		2858067,2858494,2858820,2859096,2859429,2859692,2860159,2860513	2858223,2858566,2858920,2859248,2859503,2859904,2860239,2861244	
chr6	2861292	2870663	2861580	2870347	+	GC6	Cre06.g271950.t1.2		2861292,2861498,2861780,2862182,2862662,2863200,2863805,2864158,2864761,2865480,2865901,2866936,2868147,2868585,2869096,2869532,2869845,2870191	2861382,2861619,2861863,2862280,2862748,2863283,2863870,2864346,2865165,2865548,2866742,2867791,2868292,2868819,2869236,2869673,2869999,2870663	Uso1 / p115 like vesicle tethering protein
chr6	2870722	2875466	2871325	2875252	-	Cre06.g272000.t1.1	Cre06.g272000.t1.1		2875213,2874789,2874218,2873742,2873369,2872924,2872288,2871881,2870722	2875466,2875010,2874328,2873788,2873453,2873046,2872527,2872066,2871616	
chr6	2875877	2880881	2876359	2880830	-	PGM1	Cre06.g272050.t1.2		2880785,2880381,2879124,2878624,2878233,2877567,2877167,2876776,2875877	2880881,2880539,2879765,2878722,2878433,2877791,2877311,2876937,2876562	Phosphoglyceromutase (EC 5.4.2.1); bisphosphoglycerate-independent; probably plastid form
chr6	2880931	2887311	2881408	2886984	-	Cre06.g272100.t1.1	Cre06.g272100.t1.1		2886930,2886340,2886047,2882425,2882144,2881714,2880931	2887311,2886562,2886186,2885910,2882228,2881994,2881468	
chr6	2887412	2889607	2887828	2889128	+	Cre06.g272150.t1.2	Cre06.g272150.t1.2		2887412,2887754,2888079,2888398,2888675,2889035	2887651,2887850,2888155,2888463,2888743,2889607	
chr6	2889662	2891753	2889927	2891263	+	Cre06.g272200.t1.2	Cre06.g272200.t1.2		2889662,2890246,2890542,2890908	2890001,2890333,2890654,2891753	
chr6	2891774	2896177	2892789	2895693	-	PHC27	Cre06.g272250.t1.1		2895985,2895629,2895232,2894941,2893849,2891774	2896177,2895759,2895501,2895087,2894805,2893628	
chr6	2896342	2900679	2896808	2900101	+	CPLD57	Cre06.g272300.t1.2		2896342,2897355,2897837,2898362,2898629,2899107,2899439,2899992	2897083,2897490,2897938,2898409,2898743,2899162,2899572,2900679	Conserved in the Plant Lineage and Diatoms
chr6	2901408	2907046	2901796	2906789	-	Cre06.g272350.t1.2	Cre06.g272350.t1.2		2906714,2906472,2905758,2905220,2904856,2904506,2903957,2903389,2903109,2902565,2902226,2901408	2907046,2906565,2906155,2905386,2904907,2904682,2904115,2903700,2903208,2902980,2902361,2902008	
chr6	2907115	2908096	2907272	2907981	-	Cre06.g272400.t1.2	Cre06.g272400.t1.2		2907853,2907115	2908096,2907786	
chr6	2908268	2914196	2908908	2913794	-	MBI1	Cre06.g272450.t1.1		2913728,2913551,2911148,2909607,2908268	2914196,2913655,2913451,2910734,2909298	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; stabilizes psbI mRNA
chr6	2914471	2916036	2915081	2916006	-	Cre06.g272475.t1.1	Cre06.g272475.t1.1		2915352,2914471	2916036,2915159	
chr6	2916157	2918908	2916240	2917638	+	Cre06.g272500.t1.2	Cre06.g272500.t1.2		2916157,2916733,2917169,2917533	2916411,2916768,2917264,2918908	
chr6	2919067	2922148	2919202	2921305	+	Cre06.g272550.t1.2	Cre06.g272550.t1.2		2919067,2920084,2920414,2920809,2921244	2919781,2920164,2920494,2920981,2922148	
chr6	2922217	2925498	2922257	2922952	+	Cre06.g272600.t1.2	Cre06.g272600.t1.2		2922217,2922486,2922662	2922389,2922558,2925498	
chr6	2925547	2927896	2925838	2927808	-	LHCA8	Cre06.g272650.t1.2		2927651,2927492,2927241,2926910,2926482,2926085,2925547	2927896,2927537,2927310,2926994,2926652,2926195,2925930	
chr6	2928987	2932671	2929830	2931230	+	Cre06.g272701.t1.1	Cre06.g272701.t1.1		2928987,2929730,2930370,2930614,2931023	2929464,2929986,2930473,2930770,2932671	
chr6	2933247	2934458	2933415	2934207	+	Cre06.g272750.t1.1	Cre06.g272750.t1.1		2933247,2934207	2933873,2934458	
chr6	2934507	2936264	2934596	2935424	+	Cre06.g272760.t1.2	Cre06.g272760.t1.2		2934507,2935004	2934827,2936264	
chr6	2937601	2941166	2938673	2941137	-	RPS8	Cre06.g272800.t1.2		2941133,2940923,2940469,2939399,2937601	2941166,2940995,2940604,2939599,2938886	Cytosolic 40S small ribosomal subunit protein S8
chr6	2941297	2943824	2941392	2943194	+	PRPL10	Cre06.g272850.t1.2		2941297,2941499,2941634,2941817,2942344,2943002	2941418,2941565,2941741,2941948,2942526,2943824	imported to chloroplast; Chloroplast large ribosomal subunit protein L1
chr6	2943997	2947698	2944144	2946674	+	AOF3	Cre06.g272900.t1.2		2943997,2944267,2944442,2944843,2945123,2945463,2945845,2946184,2946527	2944159,2944362,2944681,2944983,2945329,2945719,2946051,2946388,2947698	Flavin-containing amine oxidase and early zygote expressed protein [PMID: 1848763]
chr6	2948287	2950784	2948795	2950601	+	RPS18	Cre06.g272950.t1.1		2948287,2948792,2949191,2950194,2950582	2948464,2948967,2949312,2950342,2950784	Cytosolic 40S small ribosomal subunit protein S18
chr6	2951105	2953056	2951313	2952895	-	Cre06.g273000.t1.2	Cre06.g273000.t1.2		2952857,2952712,2952463,2952017,2951624,2951105	2953056,2952747,2952534,2952150,2951674,2951381	
chr6	2953167	2956570	2953265	2956306	+	CGLD10	Cre06.g273050.t1.2		2953167,2953936,2954407,2954819,2955171,2955493,2956184	2953622,2954053,2954567,2954995,2955275,2955982,2956570	related to SET domain transcriptional regulators
chr6	2956707	2961390	2956751	2960338	+	Cre06.g273100.t1.1	Cre06.g273100.t1.1		2956707,2957137,2957404,2957906,2958311,2958616,2959039,2959676,2960119	2956934,2957163,2957478,2958061,2958403,2958741,2959476,2959840,2961390	
chr6	2961437	2963968	2961504	2963590	+	Cre06.g273150.t1.2	Cre06.g273150.t1.2		2961437,2962082,2962985	2961915,2962802,2963968	in the RrmJ/FtsJ family; possible RNA 2'-O-ribose methyltransferase
chr6	2963974	2968926	2964686	2968808	-	Cre06.g273200.t1.1	Cre06.g273200.t1.1		2968358,2967957,2967521,2967371,2967077,2966767,2966446,2965940,2965555,2965024,2963974	2968926,2968046,2967561,2967449,2967194,2966819,2966601,2966076,2965726,2965316,2964870	
chr6	2969051	2973338	2969166	2972704	+	Cre06.g273250.t1.2	Cre06.g273250.t1.2		2969051,2969401,2969782,2970209,2970577,2971016,2971513,2972021,2972624	2969306,2969637,2969883,2970286,2970762,2971172,2971666,2972257,2973338	
chr6	2973341	2980676	2973936	2980607	-	TST1	Cre06.g273300.t1.2		2980265,2979638,2979203,2978721,2978045,2977543,2977085,2976577,2976060,2975656,2975148,2974855,2974347,2973341	2980676,2979808,2979286,2978831,2978176,2977673,2977245,2976746,2976229,2975781,2975343,2974926,2974493,2974026	
chr6	2980777	2983238	2980929	2982172	+	Cre06.g273350.t1.2	Cre06.g273350.t1.2		2980777,2981194,2981847	2981018,2981559,2983238	Related to GCN5
chr6	2983287	2985548	2983510	2985146	+	Cre06.g273400.t1.2	Cre06.g273400.t1.2		2983287,2984091,2984627	2983657,2984276,2985548	
chr6	2985657	2993048	2985750	2992409	+	Cre06.g273413.t1.1	Cre06.g273413.t1.1		2985657,2985885,2986053,2986409,2986735,2987186,2987673,2988602,2989017,2989325,2989698,2990031,2990576,2991017,2991376,2991734	2985797,2985924,2986230,2986465,2986848,2987396,2987847,2988747,2989167,2989402,2989847,2990207,2990761,2991134,2991575,2993048	
chr6	2993051	2995926	2993404	2995673	-	Cre06.g273450.t1.1	Cre06.g273450.t1.1		2995520,2995397,2995119,2994833,2994512,2994198,2993696,2993051	2995926,2995425,2995289,2995013,2994705,2994348,2993827,2993536	null-allele mutant was isolated (PMID 29743196)
chr6	2996026	2999256	2996501	2998992	-	Cre06.g273500.t1.2	Cre06.g273500.t1.2		2998927,2998804,2998357,2998075,2997826,2997378,2997049,2996750,2996026	2999256,2998837,2998674,2998219,2997982,2997648,2997198,2996884,2996618	Golgi-enzyme, involved in cell wall glycosylation; ts lethal mutations isolated (PMID 25336509)
chr6	2996026	2999256	2996501	2998992	-	Cre06.g273500.t2.1	Cre06.g273500.t2.1		2998954,2998804,2998357,2998075,2997826,2997378,2997049,2996750,2996026	2999256,2998837,2998674,2998219,2997982,2997648,2997198,2996884,2996618	Golgi-enzyme, involved in cell wall glycosylation; ts lethal mutations isolated (PMID 25336509)
chr6	2999377	3000917	2999518	3000216	+	Cre06.g273550.t1.2	Cre06.g273550.t1.2		2999377,2999687,3000057	2999579,2999877,3000917	
chr6	3001036	3002331	3001154	3002293	-	RPS27A	Cre06.g273600.t1.2		3002271,3002084,3001542,3001036	3002331,3002158,3001759,3001388	Cytosolic 40S small ribosomal subunit protein S27a
chr6	3002467	3005008	3003033	3004586	+	Cre06.g273650.t1.2	Cre06.g273650.t1.2		3002467,3003208,3003474,3003672,3004019,3004319	3003055,3003316,3003514,3003760,3004129,3005008	
chr6	3005565	3009006	3006053	3008890	-	HCF136	Cre06.g273700.t1.2		3008832,3008569,3008440,3008009,3007788,3007440,3006782,3006433,3005565	3009006,3008759,3008503,3008236,3007852,3007533,3006972,3006548,3006258	
chr6	3009058	3014285	3009890	3014196	-	SABC	Cre06.g273750.t1.1		3014193,3014054,3013853,3013604,3012593,3012080,3011435,3010837,3010338,3009058	3014285,3014115,3013934,3013720,3012758,3012213,3011754,3010945,3010526,3010031	CysA-like protein, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 177818]. Discussed by Lindberg and Melis 28 [PMID: 18682979].
chr6	3014426	3021550	3014585	3020977	+	Cre06.g273800.t1.2	Cre06.g273800.t1.2		3014426,3014914,3015297,3015581,3015835,3016179,3016639,3017163,3017542,3017842,3019773,3020545	3014692,3015010,3015338,3015670,3015892,3016354,3016891,3017286,3017644,3019608,3020381,3021550	
chr6	3022319	3023535	3022556	3023507	-	HTB7	Cre06.g273850.t1.2		3022854,3022319	3023535,3022556	replication linked H2B; histone gene cluster VII (type 34AB)
chr6	3023666	3024517	3023790	3024184	+	HTA7	Cre06.g273900.t1.2		3023666	3024517	replication linked H2A; histone gene cluster VII (type 34AB)
chr6	3024630	3025695	3025353	3025666	-	HFO7	Cre06.g273950.t1.2		3024630	3025695	replication linked H4; histone gene cluster VII (type 34AB)
chr6	3025856	3026337	3025889	3026298	+	HTR7	Cre06.g274000.t1.2		3025856	3026337	replication linked H3; histone gene cluster VII (type 34AB)
chr6	3026398	3039925	3026855	3039621	-	Cre06.g274050.t1.1	Cre06.g274050.t1.1		3039173,3038192,3037911,3037497,3037029,3036304,3036067,3035560,3035228,3034960,3034647,3034156,3033706,3033534,3033192,3032780,3032573,3032344,3031974,3031641,3031175,3030817,3026398	3039925,3038934,3038028,3037602,3037224,3036723,3036181,3035816,3035345,3035086,3034743,3034467,3033888,3033603,3033256,3032839,3032614,3032415,3032113,3031798,3031278,3030905,3030651	
chr6	3040070	3041135	3040582	3040991	-	HTR6	Cre06.g274101.t1.1		3040070	3041135	replication linked H3; histone gene cluster VI (type 34AB)
chr6	3041246	3042257	3041279	3041592	+	HFO6	Cre06.g274150.t1.2		3041246	3042257	replication linked H4; histone gene cluster VI (type 34AB)
chr6	3042290	3044105	3043599	3043990	-	HTA6	Cre06.g274200.t1.2		3042290	3044105	replication linked H2A; histone gene cluster VI (type 34AB)
chr6	3044206	3045487	3044276	3044739	+	HTB6	Cre06.g274250.t1.2		3044206	3045487	replication linked H2B; histone gene cluster VI (type 34AB)
chr6	3045493	3046645	3046295	3046608	-	HFO5	Cre06.g274300.t1.2		3045493	3046645	replication linked H4; histone gene cluster V (type 43)
chr6	3046856	3047327	3046898	3047307	+	HTR5	Cre06.g274350.t1.2		3046856	3047327	replication linked H3; histone gene cluster V (type 43)
chr6	3047400	3051705	3047910	3051458	-	HTA42	Cre06.g274400.t1.2		3051419,3051255,3050950,3050549,3050114,3049535,3049230,3048877,3048436,3047400	3051705,3051319,3051067,3050606,3050215,3049608,3049299,3048958,3048523,3048048	next to Histone cluster VII and XXIV and to SMM20
chr6	3051816	3055867	3051852	3055282	+	Cre06.g274450.t1.1	Cre06.g274450.t1.1		3051816,3052602,3052971,3053315,3053588,3053965,3054303,3054587,3054815	3052395,3052797,3053050,3053377,3053684,3054079,3054357,3054689,3055867	next to Histone cluster VII and XXIV and to SMM19
chr6	3056236	3059146	3056422	3058734	+	Cre06.g274500.t1.2	Cre06.g274500.t1.2		3056236,3056593,3056733,3057533,3057802,3058304,3058685	3056527,3056661,3056915,3057589,3057891,3058503,3059146	
chr6	3059306	3072687	3059449	3069691	+	Cre06.g274550.t1.1	Cre06.g274550.t1.1		3059306,3059945,3060352,3060754,3061763,3062101,3062631,3063010,3063632,3064099,3064773,3065318,3065899,3066599,3066885,3067707,3068001,3068366,3068633,3069172,3069616	3059617,3060048,3060511,3060932,3061844,3062218,3062737,3063135,3063771,3064444,3064870,3065606,3066369,3066689,3067010,3067771,3068108,3068409,3068768,3069246,3072687	
chr6	3073786	3078957	3074088	3078043	+	Cre06.g274600.t1.2	Cre06.g274600.t1.2		3073786,3074565,3074879,3075460,3075917,3076269,3076698,3077252,3077935	3074103,3074690,3074929,3075578,3076063,3076399,3076846,3077386,3078957	
chr6	3079052	3086006	3079114	3085384	+	NUOAF4	Cre06.g274650.t1.1		3079052,3079462,3079850,3080448,3081260,3081537,3082114,3082631,3082995,3083437,3083758,3084154,3084572,3084938,3085276	3079298,3079646,3079996,3080601,3081327,3081731,3082197,3082760,3083155,3083517,3083898,3084240,3084668,3085056,3086006	Similar to complex I intermediate-associated protein 3; see NUOAF1.  Also resembles NmrA negative transcriptional regulator protein family
chr6	3086146	3089607	3086444	3089068	+	OTU4	Cre06.g274700.t1.1		3086146,3087147,3087610,3087918,3088087,3088289,3088579	3086778,3087307,3087747,3087987,3088143,3088386,3089607	Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr6	3089630	3090245	3089741	3090204	-	HTB4	Cre06.g274750.t1.2		3089630	3090245	replication linked H2B; histone gene cluster IV (type 43AB)
chr6	3090356	3091577	3090480	3090874	+	HTA4	Cre06.g274800.t1.2		3090356	3091577	replication linked H2A; histone gene cluster IV (type 43AB)
chr6	3091697	3092365	3091922	3092331	-	HTR4	Cre06.g274850.t1.2		3091697	3092365	replication linked H3; histone gene cluster IV (type 43AB)
chr6	3092526	3093237	3092628	3092941	+	HFO4	Cre06.g274900.t1.2		3092526	3093237	replication linked H4; histone gene cluster IV (type 43AB)
chr6	3093250	3102965	3093381	3102942	-	Cre06.g274950.t1.1	Cre06.g274950.t1.1		3102864,3102435,3101592,3101150,3100575,3099866,3099448,3099063,3098639,3098328,3097783,3097235,3096807,3094695,3094286,3093250	3102965,3102574,3102066,3101327,3100929,3100296,3099547,3099200,3098738,3098458,3097828,3097343,3096913,3096349,3094465,3093970	
chr6	3103080	3103955	3103276	3103838	-	Cre06.g274994.t1.2	Cre06.g274994.t1.2		3103080	3103955	
chr6	3104443	3109347	3104478	3107798	+	Cre06.g275000.t1.1	Cre06.g275000.t1.1		3104443,3104722,3105045,3105467,3105888,3106295,3107014,3107734	3104594,3104776,3105143,3105529,3105997,3106448,3107108,3109347	
chr6	3109356	3114301	3110326	3114102	-	GGH2	Cre06.g275050.t1.1		3114034,3113173,3112849,3112400,3111732,3111080,3110728,3109356	3114301,3113356,3112973,3112532,3111939,3111282,3110837,3110435	Putative gamma-glutamyl hydrolase, folate metabolism, ER targeting sequence predicted by Predotar.
chr6	3114432	3118657	3114527	3118015	+	Cre06.g275100.t1.2	Cre06.g275100.t1.2		3114432,3114645,3114832,3115201,3115598,3115940,3116308,3116654,3117319,3117664	3114545,3114701,3114921,3115317,3115729,3115967,3116430,3117168,3117447,3118657	
chr6	3118750	3128325	3119959	3127832	-	CGL69	Cre06.g275150.t1.2		3127741,3127129,3126796,3125614,3125291,3120889,3118750	3128325,3127316,3126919,3126605,3125469,3125113,3120733	Conserved in the Green Lineage
chr6	3128446	3131317	3128644	3130699	+	Cre06.g275200.t1.1	Cre06.g275200.t1.1		3128446,3128920,3129781	3128701,3129642,3131317	
chr6	3131320	3135168	3132491	3134966	-	Cre06.g275250.t1.2	Cre06.g275250.t1.2		3134850,3134655,3133029,3131320	3135168,3134694,3134501,3132866	
chr6	3135286	3139065	3135536	3137632	+	Cre06.g275300.t1.2	Cre06.g275300.t1.2		3135286,3136142,3136530,3136998,3137554	3135611,3136188,3136657,3137215,3139065	
chr6	3139556	3148979	3140020	3147186	+	ROC40	Cre06.g275350.t1.1		3139556,3140389,3140708,3140952,3141823,3142351,3142911,3143626,3143980,3144365,3144655,3145000	3140143,3140500,3140806,3141637,3142149,3142641,3142998,3143807,3144224,3144479,3144871,3148979	Circadian clock associated transcription factor; in Matsuo et al. (2008), roc40 (rhythm of chloroplast) circadian mutant locus maps here; Goncalves et al (2016) show that the mutant is impaired in lipid accumulation during N starvation
chr6	3150163	3157185	3150644	3157059	-	Cre06.g275400.t1.1	Cre06.g275400.t1.1		3156731,3156352,3155232,3154918,3154566,3153029,3151487,3150922,3150163	3157185,3156599,3156236,3155040,3154701,3154284,3152845,3151232,3150735	
chr6	3157296	3163834	3157345	3163489	+	Cre06.g275450.t1.1	Cre06.g275450.t1.1		3157296,3157609,3158090,3158442,3158835,3159271,3159828,3160467,3160743,3161189,3161698,3163489	3157489,3157785,3158195,3158569,3158922,3159410,3159996,3160585,3160794,3161401,3162733,3163834	
chr6	3163970	3169185	3166025	3168727	-	Cre06.g275500.t1.2	Cre06.g275500.t1.2		3168899,3168637,3168345,3167960,3167758,3167506,3163970	3169185,3168742,3168530,3168070,3167814,3167590,3167299	
chr6	3169870	3177295	3171446	3176700	-	RWP2	Cre06.g275550.t1.1		3176861,3175878,3175578,3175213,3174912,3174375,3173536,3172604,3172193,3171790,3169870	3177295,3176755,3175655,3175314,3175001,3174710,3174189,3173371,3172369,3171918,3171614	putative RWP-RK domain transcription factor [PMID: 15785851]
chr6	3177850	3182005	3179259	3181865	-	Cre06.g275600.t1.2	Cre06.g275600.t1.2		3181661,3181037,3180618,3180329,3179740,3177850	3182005,3181333,3180809,3180433,3180087,3179388	
chr6	3182073	3186517	3182551	3186423	-	RPN3	Cre06.g275650.t1.2		3186144,3185934,3185496,3184917,3184328,3183827,3183288,3182870,3182073	3186517,3186071,3185632,3185028,3184465,3184021,3183459,3183071,3182645	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN3 (subunit 3) (PSD3) (PSMD3)
chr6	3186648	3188045	3187702	3188015	-	HFO3	Cre06.g275700.t1.2		3186648	3188045	replication linked H4; histone gene cluster III (type 43BA)
chr6	3188156	3189267	3188270	3188679	+	HTR3	Cre06.g275750.t1.2		3188156	3189267	replication linked H3; histone gene cluster III (type 43BA)
chr6	3189440	3190445	3189906	3190369	-	HTB3	Cre06.g275800.t1.2		3189440	3190445	replication linked H2B; histone gene cluster III (type 34AB)
chr6	3190586	3191321	3190653	3191047	+	HTA3	Cre06.g275850.t1.2		3190586	3191321	replication linked H2A; histone gene cluster III (type 43BA)
chr6	3192345	3193790	3192761	3193713	-	HON3	Cre06.g275900.t1.2		3193527,3193260,3192345	3193790,3193376,3193157	Histone H1 gene associated with replication linked histone gene cluster III; not H1A of Morris et al. 1990 [PMID: 2319488]. Likely H1B [PMID: 7480339]
chr6	3193994	3206620	3194348	3206539	-	FAP395	Cre06.g275950.t1.1		3206382,3204532,3203892,3203596,3203092,3202376,3201903,3201387,3200602,3199786,3199452,3198990,3198387,3198009,3197598,3196463,3195894,3195339,3194827,3193994	3206620,3206108,3204221,3203748,3203238,3202710,3202064,3201618,3201111,3200349,3199544,3199151,3198515,3198139,3197759,3196696,3196278,3195655,3195190,3194615	Chlamydomonas specific protein
chr6	3206741	3207710	3206846	3207012	+	TOM5	Cre06.g276001.t1.1		3206741	3207710	Mitochondrial import receptor subunit TOM5 (Translocase of outer membrane 5 kDa)
chr6	3207776	3213380	3208288	3213321	-	Cre06.g276050.t1.2	Cre06.g276050.t1.2		3213001,3212575,3212225,3211800,3211563,3211228,3210805,3210408,3209919,3209684,3209368,3208996,3207776	3213380,3212629,3212428,3212076,3211624,3211311,3210930,3210533,3210053,3209756,3209517,3209069,3208720	
chr6	3213481	3220225	3213695	3219822	+	Cre06.g276100.t1.2	Cre06.g276100.t1.2		3213481,3214153,3214435,3214926,3215994,3216427,3216876,3217633,3218067,3218750,3219023,3219638	3213881,3214214,3214645,3215522,3216071,3216566,3217422,3217758,3218432,3218788,3219366,3220225	
chr6	3213481	3220225	3213695	3219822	+	Cre06.g276100.t2.1	Cre06.g276100.t2.1		3213481,3214153,3214435,3214926,3215997,3216427,3216876,3217633,3218067,3218750,3219023,3219638	3213881,3214214,3214645,3215522,3216071,3216566,3217422,3217758,3218432,3218788,3219366,3220225	
chr6	3220245	3224400	3220336	3223636	-	Cre06.g276150.t1.2	Cre06.g276150.t1.2		3223209,3221057,3220564,3220245	3224400,3223038,3220694,3220457	
chr6	3220245	3224400	3220336	3223636	-	Cre06.g276150.t2.1	Cre06.g276150.t2.1		3223209,3221057,3220564,3220245	3224400,3223038,3220691,3220457	
chr6	3225141	3228899	3226796	3227808	+	Cre06.g276200.t1.1	Cre06.g276200.t1.1		3225141,3226085,3226880,3227422,3227751	3225914,3226811,3227228,3227645,3228899	
chr6	3225341	3228899	3226796	3227808	+	Cre06.g276200.t2.1	Cre06.g276200.t2.1		3225341,3226085,3226880,3227422,3227751	3225914,3226811,3227228,3227645,3228899	
chr6	3229000	3231860	3229006	3231502	-	Cre06.g276250.t1.1	Cre06.g276250.t1.1		3231429,3230783,3230625,3230210,3229924,3229650,3229466,3229000	3231860,3231285,3230663,3230545,3230083,3229838,3229543,3229311	
chr6	3231961	3235433	3232371	3234278	+	Cre06.g276300.t1.1	Cre06.g276300.t1.1		3231961,3232615,3233214,3233431,3233973	3232444,3233081,3233324,3233779,3235433	null-allele mutant was isolated (PMID 29743196)
chr6	3231961	3235433	3232414	3234278	+	Cre06.g276300.t2.1	Cre06.g276300.t2.1		3231961,3232587,3233214,3233431,3233973	3232444,3233081,3233324,3233779,3235433	null-allele mutant was isolated (PMID 29743196)
chr6	3235435	3238540	3235790	3238356	-	Cre06.g276350.t1.1	Cre06.g276350.t1.1		3238270,3237028,3236149,3235435	3238540,3237103,3236764,3235790	
chr6	3238595	3241080	3238842	3240620	-	Cre06.g276371.t1.2	Cre06.g276371.t1.2		3240547,3239889,3239731,3239486,3239302,3238595	3241080,3240403,3239769,3239651,3239379,3239147	
chr6	3241181	3244565	3241480	3243408	+	Cre06.g276400.t1.1	Cre06.g276400.t1.1		3241181,3241724,3242344,3242561,3243103	3241553,3242211,3242454,3242909,3244565	
chr6	3245275	3250310	3245735	3249655	-	Cre06.g276450.t1.1	Cre06.g276450.t1.1		3249550,3249212,3248349,3247856,3247403,3246158,3245275	3250310,3249424,3248612,3248078,3247790,3246233,3245894	
chr6	3245275	3250310	3245735	3249655	-	Cre06.g276450.t2.1	Cre06.g276450.t2.1		3249550,3249212,3248349,3247852,3247403,3246158,3245275	3250310,3249424,3248612,3248078,3247549,3246233,3245894	
chr6	3250475	3251470	3251009	3251400	-	HTA2	Cre06.g276500.t1.2		3250475	3251470	replication linked H2A; histone gene cluster II (type 43BA)
chr6	3251641	3252962	3251680	3252143	+	HTB2	Cre06.g276550.t1.2		3251641	3252962	replication linked H2B; histone gene cluster II (type 43BA)
chr6	3253015	3253900	3253467	3253876	-	HTR2	Cre06.g276600.t1.2		3253015	3253900	replication linked H3; histone gene cluster II (type 43AB)
chr6	3254091	3254622	3254139	3254452	+	HFO2	Cre06.g276650.t1.2		3254091	3254622	replication linked H4; histone gene cluster II (type 43AB)
chr6	3254632	3260260	3255479	3260170	-	Cre06.g276700.t1.2	Cre06.g276700.t1.2		3260110,3259882,3259623,3258990,3258715,3258359,3258009,3257445,3256953,3256596,3256127,3254632	3260260,3259967,3259664,3259090,3258779,3258517,3258117,3257568,3257107,3256681,3256278,3255639	
chr6	3260410	3261942	3260441	3261333	+	Cre06.g276750.t1.1	Cre06.g276750.t1.1		3260410,3260577,3261050,3261185	3260500,3260729,3261085,3261942	
chr6	3262001	3268296	3262097	3267877	+	Cre06.g276759.t1.2	Cre06.g276759.t1.2		3262001,3265502	3265215,3268296	
chr6	3262001	3268296	3262097	3267877	+	Cre06.g276759.t2.1	Cre06.g276759.t2.1		3262001,3265505	3265215,3268296	
chr6	3268455	3269400	3268986	3269299	-	HFO1	Cre06.g276800.t1.2		3268455	3269400	replication linked H4; histone gene cluster I (type 43BA)
chr6	3269531	3270182	3269560	3269969	+	HTR1	Cre06.g276850.t1.2		3269531	3270182	replication linked H3; histone gene cluster I (type 43BA)
chr6	3270223	3271780	3271276	3271739	-	HTB1	Cre06.g276900.t1.2		3270223	3271780	replication linked H2B; histone gene cluster I (type 43BA)
chr6	3271951	3272432	3272018	3272409	+	HTA1	Cre06.g276950.t1.2		3271951	3272432	replication linked H2A; histone gene cluster I (type 43BA)
chr6	3272540	3276136	3273160	3275898	-	Cre06.g277000.t1.2	Cre06.g277000.t1.2		3275778,3275380,3275020,3274727,3274519,3274048,3273605,3272540	3276136,3275495,3275080,3274819,3274591,3274214,3273712,3273400	
chr6	3276205	3284960	3276695	3284788	-	Cre06.g277050.t1.1	Cre06.g277050.t1.1		3284755,3284518,3283900,3283326,3282818,3282418,3281997,3281571,3280810,3280357,3279833,3279458,3278773,3278327,3277613,3277112,3276205	3284960,3284661,3283974,3283391,3282868,3282516,3282117,3281746,3281054,3280524,3279959,3279551,3279054,3278422,3278043,3277313,3276943	
chr6	3285641	3290179	3285794	3289679	+	Cre06.g277100.t1.2	Cre06.g277100.t1.2		3285641,3286209,3286462,3286987,3287290,3287658,3287985,3288476,3288942,3289451	3285896,3286259,3286575,3287080,3287371,3287729,3288137,3288647,3289175,3290179	
chr6	3290185	3298000	3292236	3297859	-	Cre06.g277150.t1.2	Cre06.g277150.t1.2		3297410,3295030,3294474,3290185	3298000,3297100,3294824,3294339	
chr6	3298171	3306152	3298294	3305637	+	BIO1	Cre06.g277200.t1.2		3298171,3298880,3299395,3299907,3300532,3301018,3302260,3303106,3303581,3304226,3304705,3305112	3298606,3298945,3299614,3300148,3300672,3301170,3302808,3303411,3303988,3304429,3304899,3306152	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
chr6	3306155	3309430	3307060	3309392	-	Cre06.g277250.t1.2	Cre06.g277250.t1.2		3309107,3308120,3306155	3309430,3308829,3307949	
chr6	3309571	3316540	3312023	3316301	-	Cre06.g277300.t1.1	Cre06.g277300.t1.1		3316269,3315388,3314895,3314067,3313517,3312884,3312512,3309571	3316540,3315570,3315099,3314602,3313745,3313174,3312673,3312224	
chr6	3316671	3326862	3316829	3326132	+	HDA13	Cre06.g277350.t1.1		3316671,3317113,3318412,3318925,3319310,3319712,3320215,3322669,3323494,3324204,3324591,3324999,3325395,3325781	3316844,3317238,3318507,3319005,3319414,3319768,3320290,3322769,3323608,3324337,3324633,3325048,3325478,3326862	ChromDB HDA3414
chr6	3327125	3330590	3327571	3330466	-	Cre06.g277400.t1.1	Cre06.g277400.t1.1		3328105,3327125	3330590,3327835	
chr6	3331078	3339330	3331958	3339183	-	Cre06.g277450.t1.2	Cre06.g277450.t1.2		3338961,3338538,3337892,3337354,3337117,3336041,3335653,3335283,3334834,3334274,3333852,3333624,3333162,3332551,3331078	3339330,3338700,3338043,3337446,3337202,3336161,3335751,3335366,3334930,3334386,3334017,3333730,3333236,3332691,3332333	
chr6	3339431	3345392	3339505	3344863	+	Cre06.g277500.t1.2	Cre06.g277500.t1.2		3339431,3340642,3341056,3341514,3341965,3343875,3344328	3340147,3340721,3341149,3341759,3343413,3343987,3345392	
chr6	3345744	3351095	3345968	3350601	+	Cre06.g277550.t1.2	Cre06.g277550.t1.2		3345744,3346484,3347074,3347663,3348295,3348713,3349147,3349503,3350100	3346088,3346816,3347220,3348126,3348494,3348796,3349238,3349727,3351095	
chr6	3351098	3354193	3351825	3354054	-	Cre06.g277600.t1.2	Cre06.g277600.t1.2		3353877,3353675,3353478,3353186,3352932,3352637,3351098	3354193,3353737,3353552,3353254,3353006,3352711,3352452	
chr6	3354248	3357803	3354552	3357399	-	Cre06.g277650.t1.2	Cre06.g277650.t1.2		3357324,3356982,3356684,3356211,3355698,3355391,3355038,3354248	3357803,3357143,3356774,3356328,3355986,3355486,3355128,3354776	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family that includes Low-CO2-inducible membrane protein LCI11
chr6	3357904	3361435	3358033	3361013	+	Cre06.g277700.t1.1	Cre06.g277700.t1.1		3357904,3358259,3358492,3358854	3358142,3358348,3358596,3361435	
chr6	3361457	3364503	3362356	3364244	-	Cre06.g277750.t1.1	Cre06.g277750.t1.1		3364135,3361457	3364503,3364068	
chr6	3364634	3380110	3364664	3379358	+	DNL4	Cre06.g277801.t1.1		3364634,3364861,3365436,3365917,3366252,3366684,3367552,3367990,3368477,3369001,3369329,3369708,3370488,3370831,3371365,3372053,3372589,3373469,3373842,3374079,3376456	3364766,3365013,3365504,3365973,3366317,3367145,3367680,3368124,3368847,3369088,3369469,3369846,3370564,3370985,3371887,3372407,3372887,3373606,3373967,3376273,3380110	ATP dependent DNA ligase, similar to DNL4, possibly also involved in non-homologous end joining (NHEJ); null-allele mutant was isolated (PMID 29743196)
chr6	3385338	3387143	3385736	3386646	-	Cre06.g277850.t1.2	Cre06.g277850.t1.2		3385338	3387143	
chr6	3397394	3399255	3397863	3398773	+	Cre06.g278085.t1.1	Cre06.g278085.t1.1		3397394	3399255	
chr6	3399268	3402063	3400301	3401983	-	Cre06.g278086.t1.1	Cre06.g278086.t1.1		3401899,3401499,3401066,3400593,3399268	3402063,3401612,3401096,3400687,3400331	
chr6	3402223	3417693	3402678	3417628	-	Cre06.g278087.t1.1	Cre06.g278087.t1.1		3417562,3417105,3416520,3415556,3414929,3414515,3414065,3413780,3413312,3412859,3412479,3412279,3412000,3410718,3410336,3409964,3409498,3409041,3408660,3408222,3405909,3405282,3404868,3404418,3404133,3403701,3403206,3402223	3417693,3417237,3416824,3415681,3414946,3414655,3414176,3413811,3413445,3413003,3412652,3412342,3412108,3411865,3410511,3410192,3409592,3409173,3408760,3408323,3406034,3405299,3405008,3404529,3404164,3403782,3403378,3402768	
chr6	3417814	3418325	3417895	3418299	+	HAV3	Cre06.g278088.t1.1		3417814,3417975,3418269	3417918,3418224,3418325	
chr6	3418369	3428333	3418773	3428097	-	Cre06.g278089.t1.1	Cre06.g278089.t1.1		3427850,3427678,3427543,3426463,3426198,3425997,3425768,3425554,3425271,3425040,3424746,3424540,3424289,3424070,3423778,3423480,3423267,3422981,3422536,3421912,3421652,3421376,3420923,3420543,3420343,3420064,3418369	3428333,3427787,3427582,3427362,3426314,3426085,3425821,3425673,3425413,3425136,3424898,3424632,3424441,3424198,3423951,3423655,3423338,3423152,3422832,3422013,3421807,3421509,3421067,3420716,3420406,3420172,3419929	
chr6	3428494	3431755	3428841	3431382	+	MRPL1	Cre06.g278090.t1.1		3428494,3428767,3429416,3429910,3430375,3430832,3431182	3428648,3429204,3429599,3430070,3430550,3430947,3431755	
chr6	3431758	3437733	3432664	3437537	-	Cre06.g278091.t1.1	Cre06.g278091.t1.1		3437482,3437288,3434876,3431758	3437733,3437346,3436997,3434700	
chr6	3437896	3442233	3438574	3441832	-	Cre06.g278092.t1.1	Cre06.g278092.t1.1		3441828,3441596,3440431,3437896	3442233,3441657,3441208,3439800	
chr6	3437896	3442233	3438574	3441832	-	Cre06.g278092.t2.1	Cre06.g278092.t2.1		3441828,3441596,3440431,3437896	3442233,3441657,3441091,3439800	
chr6	3442334	3449293	3442622	3449123	-	ELG20	Cre06.g278093.t1.1		3449017,3448617,3448405,3447952,3447645,3447382,3447083,3446700,3446384,3446111,3445846,3445631,3445323,3444980,3444672,3444314,3444002,3443676,3443368,3443011,3442334	3449293,3448727,3448461,3448119,3447736,3447454,3447222,3446800,3446494,3446178,3445949,3445686,3445433,3445089,3444744,3444464,3444100,3443836,3443486,3443239,3442824	putative terminal arabinosyl transferase on HRGP,  GT47 family; null-allele mutant was isolated (PMID 29743196)
chr6	3449984	3458225	3450425	3457808	+	ELG14	Cre06.g278094.t1.1		3449984,3450382,3450543,3451070,3451482,3451790,3452124,3452464,3452758,3453111,3453420,3453735,3454224,3454450,3454890,3455211,3455569,3456081,3456591,3456822,3457089,3457504	3450280,3450447,3450710,3451161,3451551,3451929,3452215,3452574,3452822,3453211,3453475,3453845,3454286,3454499,3454962,3455361,3455664,3456178,3456653,3456940,3457317,3458225	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr6	3458614	3468657	3459095	3468273	+	Cre06.g278095.t1.1	Cre06.g278095.t1.1		3458614,3459243,3459458,3459741,3460745,3461027,3461283,3461431,3461691,3461956,3462194,3462461,3462723,3463047,3463307,3463556,3463951,3464232,3464541,3464972,3465284,3465558,3465911,3466082,3466315,3466710,3467022,3467213,3467420	3459129,3459352,3459503,3460601,3460915,3461115,3461336,3461550,3461833,3462052,3462346,3462553,3462875,3463175,3463399,3463800,3464025,3464403,3464689,3465110,3465385,3465713,3465965,3466169,3466459,3466883,3467085,3467321,3468657	
chr6	3458614	3468801	3459095	3468273	+	Cre06.g278095.t2.1	Cre06.g278095.t2.1		3458614,3459243,3459458,3459741,3460745,3461027,3461283,3461431,3461691,3461956,3462194,3462461,3462723,3463047,3463307,3463556,3463951,3464232,3464541,3464972,3465284,3465558,3465911,3466082,3466315,3466710,3467022,3467213,3467420	3459129,3459352,3459503,3460601,3460915,3461115,3461336,3461550,3461833,3462052,3462346,3462553,3462875,3463175,3463399,3463800,3464025,3464403,3464689,3465110,3465385,3465713,3465965,3466169,3466459,3466883,3467085,3467321,3468801	
chr6	3468864	3471813	3469608	3471133	+	SELU2	Cre06.g278096.t1.1		3468864,3469120,3469358,3469557,3469876,3470269,3470698,3471011	3468996,3469185,3469395,3469611,3469969,3470441,3470764,3471813	Thioredoxin-like protein, similar to animal Selenoprotein U and Ostreococcus Thioredoxin-fold selenoprotein; model is probably truncated at N-terminus due to UGA Sec codon at position 80; add sequence at N-term: MQRSATTVGRSRPIRFAPRPLSVRVQAAAAPFATNGTTDAYNRIKGIKVYRSSDGELVDLTSLWGPNERAVVAFARSFGUFFCWELAIQLRRDVKPKLDE
chr6	3471992	3474433	3473218	3474278	-	Cre06.g278097.t1.1	Cre06.g278097.t1.1		3471992	3474433	contains WD40 repeats
chr6	3474930	3482386	3475226	3481396	+	Cre06.g278098.t1.1	Cre06.g278098.t1.1		3474930,3475681,3476018,3476414,3476714,3477058,3477501,3478018,3478540,3478979,3479390,3479810,3480325,3480900,3481190	3475411,3475867,3476073,3476530,3476804,3477179,3477633,3478186,3478628,3479089,3479536,3480073,3480689,3481030,3482386	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor; 3-methylcrotonyl-CoA carboxylase; biotin-dependent carboxylase; contains a very short LSU-rRNA motif on the opposite strand (4456221-4456270), in intron
chr6	3482474	3486047	3482524	3484694	+	Cre06.g278099.t1.1	Cre06.g278099.t1.1		3482474,3482966,3483222,3483433,3483785,3484058,3484285,3484505	3482827,3483053,3483321,3483671,3483944,3484181,3484350,3486047	
chr6	3486094	3490166	3486147	3489839	+	Cre06.g278101.t1.1	Cre06.g278101.t1.1		3486094,3486530,3486824,3487453,3488100,3488665,3489075,3489656	3486308,3486613,3486942,3487604,3488195,3488779,3489187,3490166	Putative serine/threonine dehydratase (EC 4.3.1.19) - serine racemase (EC 5.1.1.10) ; based on similarity to bifunctional Arabidopsis serine racemase (GenBank AB206823) (PMID: 16483618); converts L-serine to D-serine (serine racemase) or to pyruvate (seri
chr6	3490235	3492713	3491461	3492644	-	Cre06.g278102.t1.1	Cre06.g278102.t1.1		3492578,3490235	3492713,3492349	
chr6	3492854	3499638	3493004	3499092	+	Cre06.g278103.t1.1	Cre06.g278103.t1.1		3492854,3493567,3493841,3494233,3494583,3495310,3495969,3496610,3497253,3497685,3498268,3498632,3499010	3493170,3493649,3493896,3494293,3494738,3495627,3496232,3496906,3497381,3497840,3498402,3498681,3499638	
chr6	3500076	3503133	3501125	3503094	-	Cre06.g278104.t1.1	Cre06.g278104.t1.1		3503024,3502861,3502616,3502297,3501836,3501483,3500076	3503133,3502928,3502705,3502393,3501912,3501666,3501226	
chr6	3503234	3506225	3503319	3505680	+	Cre06.g278105.t1.1	Cre06.g278105.t1.1		3503234,3504263,3504750,3505176	3503979,3504375,3504774,3506225	
chr6	3506761	3508783	3507558	3508498	-	Cre06.g278106.t1.1	Cre06.g278106.t1.1		3508445,3507852,3506761	3508783,3507891,3507663	
chr6	3512313	3518154	3512564	3515466	+	Cre06.g278107.t1.1	Cre06.g278107.t1.1		3512313	3518154	
chr6	3512313	3518154	3512564	3515466	+	Cre06.g278107.t2.1	Cre06.g278107.t2.1		3512313,3513101	3512890,3518154	
chr6	3518393	3522359	3518513	3521875	+	Cre06.g278108.t1.1	Cre06.g278108.t1.1		3518393,3518769,3519217,3520331,3520560,3520973,3521430	3518612,3518855,3519292,3520407,3520673,3521088,3522359	
chr6	3520223	3522359	3520296	3521875	+	Cre06.g278108.t2.1	Cre06.g278108.t2.1		3520223,3520560,3520973,3521430	3520407,3520673,3521088,3522359	
chr6	3522433	3528302	3522554	3527206	+	Cre06.g278109.t1.1	Cre06.g278109.t1.1		3522433,3523079,3524133,3524539,3525065,3525387,3525791,3526458,3526729,3527069	3522791,3523243,3524368,3524625,3525179,3525451,3526160,3526516,3526841,3528302	
chr6	3528547	3537402	3529519	3537177	-	Cre06.g278110.t1.1	Cre06.g278110.t1.1		3536960,3536575,3536096,3535709,3535428,3535164,3534827,3534422,3534136,3533690,3533416,3532074,3531476,3530980,3530351,3528547	3537402,3536683,3536174,3535891,3535511,3535205,3534894,3534573,3534264,3533827,3533436,3533191,3531850,3531251,3530668,3530165	
chr6	3537457	3545812	3538693	3545671	-	Cre06.g278111.t1.1	Cre06.g278111.t1.1		3545525,3545355,3545199,3544927,3544429,3543799,3543310,3542991,3542604,3542135,3541788,3541441,3541198,3540700,3540310,3539947,3539543,3537457	3545812,3545445,3545263,3544987,3544530,3543921,3543474,3543114,3542746,3542250,3541872,3541536,3541274,3540838,3540435,3540087,3539679,3539159	
chr6	3545867	3547272	3546443	3547219	-	Cre06.g278112.t1.1	Cre06.g278112.t1.1		3547084,3546793,3545867	3547272,3546837,3546488	
chr6	3547511	3549792	3548165	3549762	-	Cre06.g278113.t1.1	Cre06.g278113.t1.1		3549687,3549003,3548616,3547511	3549792,3549224,3548693,3548315	
chr6	3549973	3552164	3550029	3551520	+	Cre06.g278114.t1.1	Cre06.g278114.t1.1		3549973,3550410,3551063,3551493	3550182,3550733,3551236,3552164	
chr6	3552224	3554432	3552868	3554198	-	Cre06.g278115.t1.1	Cre06.g278115.t1.1		3554194,3553780,3553481,3553289,3552224	3554432,3553800,3553675,3553325,3553028	
chr6	3554487	3559970	3555303	3559837	-	Cre06.g278116.t1.1	Cre06.g278116.t1.1		3559621,3559268,3558684,3558127,3557495,3557099,3556606,3556193,3555763,3554487	3559970,3559369,3558812,3558267,3557722,3557216,3556706,3556314,3555852,3555499	
chr6	3560063	3564034	3560179	3563469	+	CPLD7	Cre06.g278117.t1.1		3560063,3560667,3561090,3561511,3562449,3562879,3563330	3560293,3560773,3561210,3561660,3562503,3563011,3564034	
chr6	3564037	3567422	3564396	3566956	-	Cre06.g278118.t1.1	Cre06.g278118.t1.1		3567315,3566935,3566829,3566572,3565902,3565413,3565062,3564037	3567422,3567046,3566864,3566718,3566402,3565702,3565230,3564798	
chr6	3564037	3567222	3564396	3566956	-	Cre06.g278118.t2.1	Cre06.g278118.t2.1		3566935,3566829,3566572,3565902,3565413,3565062,3564037	3567222,3566864,3566718,3566402,3565702,3565230,3564798	
chr6	3564037	3567422	3564396	3566996	-	Cre06.g278118.t3.1	Cre06.g278118.t3.1		3567315,3566935,3566572,3565902,3565413,3565062,3564037	3567422,3567046,3566657,3566402,3565702,3565230,3564798	
chr6	3567513	3572674	3567943	3570876	+	Cre06.g278119.t1.1	Cre06.g278119.t1.1		3567513,3568241,3568492,3568762,3569134,3570153,3570627	3567994,3568319,3568565,3568826,3569930,3570352,3572674	
chr6	3580243	3581494	3580962	3581269	+	Cre06.g278120.t1.1	Cre06.g278120.t1.1		3580243	3581494	
chr6	3580873	3581494	3580962	3581269	+	Cre06.g278120.t2.1	Cre06.g278120.t2.1		3580873	3581494	
chr6	3586048	3590732	3587617	3588961	-	Cre06.g278121.t1.1	Cre06.g278121.t1.1		3590602,3588789,3588675,3588196,3586048	3590732,3588972,3588719,3588290,3587809	
chr6	3590779	3596262	3591143	3596029	-	Cre06.g278122.t1.1	Cre06.g278122.t1.1		3595628,3595268,3594845,3594386,3594050,3593265,3592628,3592226,3591544,3590779	3596262,3595392,3594939,3594469,3594136,3593741,3592699,3592333,3591696,3591335	
chr6	3596467	3599652	3597616	3599135	-	VPS39	Cre06.g278123.t1.1		3599528,3599329,3596467	3599652,3599437,3599170	Hypothetical Conserved Protein. Similar to VPS39 homologues, components of VPS-C complex. Splicing is somewhat speculative, may still be missing exons.
chr6	3599727	3610732	3599939	3610596	-	Cre06.g278124.t1.1	Cre06.g278124.t1.1		3610413,3610067,3609600,3609147,3608757,3608217,3607210,3606245,3605814,3605305,3604742,3604449,3601737,3600682,3599727	3610732,3610198,3609689,3609294,3608929,3608463,3608008,3606863,3605955,3605384,3604915,3604499,3603102,3601388,3600428	
chr6	3612203	3620989	3612488	3620424	+	Cre06.g278125.t1.1	Cre06.g278125.t1.1		3612203,3612640,3612792,3613001,3613376,3613855,3614338,3614735,3615133,3615620,3616042,3616623,3617205,3617597,3617909,3618447,3618834,3619260,3619626,3619988,3620253	3612506,3612732,3612926,3613291,3613510,3614064,3614556,3614866,3615362,3615808,3616215,3616919,3617385,3617755,3618145,3618701,3618976,3619439,3619808,3620072,3620989	
chr6	3621173	3630174	3621315	3629709	+	Cre06.g278126.t1.1	Cre06.g278126.t1.1		3621173,3621514,3621770,3622124,3622527,3623009,3623372,3623733,3624670,3625430,3626168,3626737,3627347,3627747,3628267,3628727,3629102	3621437,3621616,3621818,3622212,3622625,3623088,3623519,3624388,3625158,3625829,3626239,3627021,3627490,3627888,3628385,3628857,3630174	
chr6	3630187	3634552	3630720	3634457	-	Cre06.g278127.t1.1	Cre06.g278127.t1.1		3634302,3633732,3633249,3632309,3631423,3630187	3634552,3633880,3633316,3633024,3631972,3631041	
chr6	3634607	3637592	3635263	3637329	-	Cre06.g278128.t1.1	Cre06.g278128.t1.1		3637295,3636642,3635770,3634607	3637592,3637009,3636444,3635524	
chr6	3638233	3644324	3639209	3643211	+	Cre06.g278129.t1.1	Cre06.g278129.t1.1		3638233,3638731,3638923,3640484,3640947,3641273,3641670,3642035,3642392	3638564,3638808,3640222,3640631,3641060,3641364,3641789,3642176,3644324	
chr6	3644373	3652364	3644470	3651372	+	Cre06.g278131.t1.1	Cre06.g278131.t1.1		3644373,3644839,3645123,3645399,3645598,3645788,3646331,3646792,3647522,3647843,3648061,3651183	3644758,3644915,3645247,3645437,3645625,3645896,3646479,3647356,3647608,3647882,3650924,3652364	
chr6	3652537	3654612	3654173	3654579	-	Cre06.g278132.t1.1	Cre06.g278132.t1.1		3654341,3652537	3654612,3654271	
chr6	3654793	3658214	3654982	3656337	+	Cre06.g278133.t1.1	Cre06.g278133.t1.1		3654793,3655350,3655646,3656113,3656313	3655077,3655389,3655707,3656152,3658214	
chr6	3658389	3660502	3660057	3660463	-	Cre06.g278134.t1.1	Cre06.g278134.t1.1		3660225,3658389	3660502,3660155	
chr6	3662707	3666252	3662949	3666127	-	RPL21	Cre06.g278135.t1.1		3666228,3665977,3665758,3664587,3663448,3662707	3666252,3666146,3665844,3664756,3663572,3663107	Component of cytosolic 80S ribosome and 60S large subunit
chr6	3666373	3671074	3666663	3670267	+	Cre06.g278136.t1.1	Cre06.g278136.t1.1		3666373,3666879,3667297,3668575,3669246,3669668,3670144	3666674,3666972,3668316,3668729,3669380,3669857,3671074	
chr6	3671133	3673310	3671453	3672437	+	Cre06.g278137.t1.1	Cre06.g278137.t1.1		3671133,3671886	3671658,3673310	
chr6	3673312	3680532	3673611	3679767	-	OPR119	Cre06.g278138.t1.1		3680421,3679093,3678734,3678258,3677367,3676666,3676174,3674419,3674018,3673312	3680532,3680309,3678820,3678492,3678025,3677047,3676419,3675972,3674244,3673846	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 209 codons at 5'-end:  MSVPKRLAWLLPGHALAPLLVQSRTFGEGVLQNLLDVSSERGGQHPAGALSRGASSSSQAPPAARATVQTEGDGASISRSGSLGEAPTAAVATLGLAGAGGSVAAGAHVAPAVTDTGAVAVAPGVAEGIQERVARLRAELGRGGQHNSSAGASRGGRGAGGGGGGSERQAQIDPAGRRQGGTGAAADGVLAGGGSSSAGGGFSDSKGAG
chr6	3680587	3683872	3681615	3683567	-	Cre06.g278139.t1.1	Cre06.g278139.t1.1		3683522,3683212,3682937,3682610,3682347,3681985,3680587	3683872,3683305,3683071,3682707,3682370,3682113,3681723	
chr6	3684035	3687533	3684238	3686067	+	Cre06.g278140.t1.1	Cre06.g278140.t1.1		3684035,3684412,3684746,3685127,3685605	3684327,3684655,3684838,3685471,3687533	
chr6	3688033	3691824	3688144	3691248	+	Cre06.g278141.t1.1	Cre06.g278141.t1.1		3688033,3690099,3690720	3689894,3690550,3691824	
chr6	3691837	3697942	3692278	3697682	-	Cre06.g278142.t1.1	Cre06.g278142.t1.1		3697513,3696964,3696179,3695516,3694922,3693700,3693380,3692989,3692618,3691837	3697942,3697088,3696624,3695635,3695057,3693911,3693449,3693141,3692689,3692350	
chr6	3698167	3701162	3698735	3700703	-	GAE	Cre06.g278143.t1.1		3700672,3699822,3699554,3699293,3698167	3701162,3700322,3699657,3699397,3699038	likely localized to Golgi
chr6	3701572	3704891	3701791	3704331	+	Cre06.g278144.t1.1	Cre06.g278144.t1.1		3701572,3702211,3702658,3703073,3703347,3703797,3704251	3702011,3702322,3702716,3703188,3703412,3703911,3704891	
chr6	3705252	3711975	3705288	3711009	+	Cre06.g278145.t1.1	Cre06.g278145.t1.1		3705252,3705744,3706145,3706706,3707260,3707744,3708008,3708286,3709173	3705546,3705814,3706323,3706895,3707440,3707812,3708067,3708846,3711975	
chr6	3713248	3716901	3714247	3716089	-	Cre06.g278146.t1.1	Cre06.g278146.t1.1		3716784,3715862,3715523,3714821,3714455,3713248	3716901,3716473,3715643,3715293,3714659,3714247	
chr6	3717012	3720523	3717122	3720179	+	Cre06.g278147.t1.1	Cre06.g278147.t1.1		3717012,3717701,3718032,3719754	3717324,3717868,3719465,3720523	
chr6	3720539	3724221	3720916	3724119	-	Cre06.g278148.t1.1	Cre06.g278148.t1.1		3723819,3723528,3723266,3722905,3722400,3721954,3721475,3720539	3724221,3723617,3723377,3723069,3722512,3722007,3721635,3721082	
chr6	3724332	3732072	3724662	3729904	+	Cre06.g278149.t1.1	Cre06.g278149.t1.1		3724332	3732072	
chr6	4800956	4804901	4802031	4804859	-	Cre06.g278150.t1.1	Cre06.g278150.t1.1		4804694,4804538,4804163,4803296,4802941,4802495,4800956	4804901,4804614,4804246,4803391,4803033,4802624,4802109	
chr6	3732162	3735853	3732301	3735266	+	Cre06.g278151.t1.1	Cre06.g278151.t1.1		3732162,3732490,3732753,3733110,3733518,3733806,3734152,3734566,3734990	3732425,3732583,3732821,3733323,3733610,3733862,3734238,3734739,3735853	
chr6	3736492	3743409	3736811	3742309	+	Cre06.g278152.t1.1	Cre06.g278152.t1.1		3736492,3737084,3737266,3737682,3738038,3738351,3738722,3739170,3739462,3739797,3740284,3740760,3741123	3736986,3737134,3737502,3737902,3738182,3738439,3738864,3739284,3739602,3739979,3740562,3740905,3743409	
chr6	3743512	3749073	3744118	3747749	+	Cre06.g278153.t1.1	Cre06.g278153.t1.1		3743512,3744545,3744862,3745750,3746173,3746361,3746553,3746901,3747465,3747721	3744194,3744667,3745541,3746022,3746232,3746399,3746630,3747254,3747604,3749073	
chr6	3749221	3754511	3749874	3754333	-	Cre06.g278154.t1.1	Cre06.g278154.t1.1		3754232,3754002,3753437,3753171,3752703,3752435,3752025,3751644,3751229,3750812,3750560,3750283,3749221	3754511,3754128,3753628,3753248,3752948,3752539,3752259,3751802,3751377,3750984,3750659,3750379,3750089	
chr6	3754652	3760573	3754870	3759684	+	Cre06.g278156.t1.1	Cre06.g278156.t1.1		3754652,3755259,3755453,3755643,3755870,3756122,3756332,3756608,3757081	3754997,3755342,3755493,3755688,3756028,3756221,3756500,3756935,3760573	
chr6	3761232	3764773	3761833	3764197	+	Cre06.g278157.t1.1	Cre06.g278157.t1.1		3761232,3761670,3762396,3762734,3763049,3763651,3764060	3761534,3762150,3762546,3762864,3763358,3763885,3764773	
chr6	3764822	3768488	3765076	3767963	+	Cre06.g278158.t1.1	Cre06.g278158.t1.1		3764822,3766443,3766817,3767053,3767387,3767820	3766227,3766565,3766894,3767092,3767534,3768488	
chr6	3768642	3772113	3768808	3770480	+	Cre06.g278159.t1.1	Cre06.g278159.t1.1		3768642,3769050,3769288,3769642,3769851	3768913,3769220,3769539,3769717,3772113	
chr6	3773006	3777221	3774255	3776714	-	PRL5	Cre06.g278160.t1.1		3776990,3775974,3775613,3775150,3774848,3774523,3773006	3777221,3776822,3775735,3775294,3774940,3774544,3774344	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr6	3777576	3783461	3778383	3783123	-	Cre06.g278161.t1.1	Cre06.g278161.t1.1		3783011,3782869,3782495,3782095,3781812,3781555,3781130,3780635,3780319,3779942,3779359,3779014,3777576	3783461,3782925,3782731,3782315,3781956,3781643,3781272,3780749,3780459,3780124,3779637,3779159,3778795	
chr6	3784323	3787464	3785009	3787167	-	PHC3	Cre06.g278162.t1.1		3787344,3787103,3786978,3786576,3786298,3785740,3785442,3784323	3787464,3787192,3786999,3786805,3786447,3786130,3785620,3785305	Pherophorin-C3 (PHC3) [PMID: 16367971; Genbank entry DQ196109]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain.
chr6	3791392	3795573	3792080	3794427	+	ARG9	Cre06.g278163.t1.1		3791392,3791953,3793291,3793760,3794176	3791763,3792957,3793419,3793885,3795573	Acetylornithine aminotransferase. Identification of Chlamydomonas ARG9 as acetylornithine aminotransferase: Loppes, R. and Heindricks, R. (1986) Arch. Microbiol. 143:348-352.  Plastid resident N-acetyl ornithine aminotransferase [PMID: 19617392]
chr6	3795586	3799951	3795622	3799818	-	Cre06.g278164.t1.1	Cre06.g278164.t1.1		3799763,3799347,3798885,3798438,3798118,3797858,3797650,3797274,3796862,3796611,3796418,3796017,3795586	3799951,3799577,3799171,3798608,3798291,3797947,3797744,3797430,3797094,3796680,3796448,3796272,3795797	
chr6	3800006	3806821	3801004	3806594	-	Cre06.g278165.t1.1	Cre06.g278165.t1.1		3806518,3806112,3805443,3804985,3804569,3804218,3803987,3803644,3803347,3803124,3802731,3802467,3802256,3801916,3801471,3800006	3806821,3806240,3805685,3805226,3804745,3804391,3804082,3803743,3803428,3803193,3802948,3802524,3802286,3802030,3801609,3801262	
chr6	3807472	3811455	3808266	3809885	+	PRL4	Cre06.g278166.t1.1		3807472,3807974,3808167,3808845,3809117,3809421,3809672	3807870,3808019,3808720,3808949,3809257,3809539,3811455	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr6	3812556	3815721	3813566	3815651	-	Cre06.g278167.t1.1	Cre06.g278167.t1.1		3815216,3814623,3814184,3813882,3812556	3815721,3815003,3814396,3813968,3813713	
chr6	3816370	3818661	3816430	3818484	-	Cre06.g278168.t1.1	Cre06.g278168.t1.1		3818371,3817935,3817431,3817115,3816798,3816370	3818661,3818153,3817659,3817215,3816944,3816596	
chr6	3818792	3822783	3818969	3822180	+	Cre06.g278169.t1.1	Cre06.g278169.t1.1		3818792,3819446,3820009,3820206,3820649,3820996,3821457	3819245,3819541,3820074,3820266,3820821,3821118,3822783	
chr6	3822801	3834631	3823484	3834497	-	FAP237	Cre06.g278170.t1.1		3834436,3833950,3833527,3833204,3832780,3832485,3832045,3831565,3831098,3830673,3830335,3829993,3829775,3829303,3829084,3828826,3828543,3828124,3827855,3827058,3826826,3826583,3826331,3825994,3825691,3825417,3825129,3824858,3824444,3824096,3822801	3834631,3834176,3833591,3833323,3832855,3832607,3832203,3831646,3831271,3830857,3830493,3830074,3829900,3829481,3829163,3828910,3828701,3828333,3827934,3827142,3826910,3826674,3826395,3826174,3825773,3825498,3825213,3824949,3824605,3824221,3823814	
chr6	3834796	3842001	3836564	3841761	-	CGL132	Cre06.g278171.t1.1		3841665,3840259,3834796	3842001,3841392,3840035	
chr6	3842964	3845751	3843395	3845587	-	Cre06.g278172.t1.1	Cre06.g278172.t1.1		3845519,3845344,3845164,3844837,3844466,3844092,3843757,3842964	3845751,3845409,3845245,3844920,3844564,3844172,3843840,3843491	
chr6	3845806	3853371	3845922	3853338	-	OPR59	Cre06.g278173.t1.1		3853328,3851672,3851049,3850626,3849763,3849170,3848600,3848086,3847447,3846886,3846548,3845806	3853371,3853260,3851435,3850850,3850503,3849532,3849001,3848390,3847810,3847209,3846685,3846294	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; the correct sequence is that of Cre13.g596950.t1.2: in the absence of experimental evidence for the proposed upstream intron in  Cre06.g278173.t1.1, the additional N-terminal 121 aminoacids must be rejected
chr6	3853472	3856493	3853505	3856212	+	Cre06.g278174.t1.1	Cre06.g278174.t1.1		3853472,3854160,3854595,3854956,3855494,3855930	3853988,3854372,3854699,3855253,3855693,3856493	
chr6	3856499	3860641	3857083	3860598	-	Cre06.g278175.t1.1	Cre06.g278175.t1.1		3860399,3860032,3859575,3859194,3859057,3858795,3858261,3857715,3856499	3860641,3860225,3859789,3859272,3859082,3858894,3858370,3857988,3857332	May contain additional coding sequence in intronic N-island PMID: 27175017
chr6	3860742	3872143	3861281	3871739	+	Cre06.g278176.t1.1	Cre06.g278176.t1.1		3860742,3861138,3861440,3861775,3862127,3862483,3863124,3863480,3864004,3864339,3864812,3865197,3865676,3866232,3866665,3867335,3868011,3868575,3870658,3871058	3860968,3861332,3861501,3861889,3862215,3862920,3863257,3863833,3864080,3864529,3864908,3865345,3865860,3866425,3866845,3867630,3868223,3870473,3870822,3872143	
chr6	3872146	3885041	3873209	3884902	-	DNL6	Cre06.g278177.t1.1		3884719,3884289,3883750,3883112,3882543,3882256,3882030,3879017,3878527,3878049,3877502,3876965,3876309,3875995,3875113,3874914,3874574,3874270,3874008,3873748,3872146	3885041,3884460,3884093,3883528,3882944,3882321,3882152,3881806,3878646,3878240,3877884,3877277,3876845,3876062,3875843,3874984,3874654,3874411,3874088,3873826,3873588	ATP-dependent DNA ligase; most similar to Arabidopsis LIG6 (AT1G66730)
chr6	3885242	3887193	3885370	3887172	+	Cre06.g278178.t1.1	Cre06.g278178.t1.1		3885242,3885567,3885775,3886219,3886416,3887172	3885461,3885625,3885820,3886253,3887045,3887193	
chr6	3887242	3894323	3887514	3893941	+	Cre06.g278179.t1.1	Cre06.g278179.t1.1		3887242,3887370,3888999,3889283,3889548,3889903,3890221,3890495,3890971,3891875,3892209,3892471,3892795,3893213,3893457,3893749	3887260,3888822,3889138,3889403,3889703,3890049,3890370,3890833,3891729,3891958,3892320,3892664,3893041,3893324,3893616,3894323	
chr6	3895310	3897571	3895903	3897059	-	Cre06.g278180.t1.1	Cre06.g278180.t1.1		3897413,3897050,3896876,3895310	3897571,3897161,3896977,3896011	
chr6	3895310	3897261	3895903	3897059	-	Cre06.g278180.t2.1	Cre06.g278180.t2.1		3897050,3896876,3895310	3897261,3896977,3896011	
chr6	3897722	3904825	3897904	3902848	+	Cre06.g278181.t1.1	Cre06.g278181.t1.1		3897722,3898449,3898654	3898217,3898504,3904825	
chr6	3897722	3904825	3898474	3902848	+	Cre06.g278181.t2.1	Cre06.g278181.t2.1		3897722,3898449,3898660	3898217,3898504,3904825	
chr6	3907166	3910501	3907564	3910368	-	Cre06.g278182.t1.1	Cre06.g278182.t1.1		3908877,3908047,3907166	3910501,3908701,3907671	
chr6	3910612	3915773	3910926	3915262	+	Cre06.g278183.t1.1	Cre06.g278183.t1.1		3910612,3911380,3911702,3912099,3912588,3912934,3913354,3913788,3914227,3915262	3911190,3911547,3911868,3912408,3912728,3913090,3913496,3913976,3914850,3915773	
chr6	3918766	3921463	3919171	3920434	+	Cre06.g278184.t1.1	Cre06.g278184.t1.1		3918766,3919162,3919517	3919058,3919322,3921463	
chr6	3921715	3925039	3922375	3924913	-	UGD2	Cre06.g278185.t1.1		3924867,3924421,3924186,3924050,3923715,3923077,3921715	3925039,3924516,3924266,3924077,3923877,3923552,3922922	belongs to the UDP-glucose/GDP-mannose dehydrogenase family. Found in the flagellar proteome [PMID: 15998802]; (UGPD1, UDP2); may be involved in alginate biosynthesis
chr6	3925268	3932771	3926264	3932663	-	Cre06.g278186.t1.1	Cre06.g278186.t1.1		3932171,3931891,3931449,3930982,3930701,3930183,3929778,3929423,3929033,3928739,3928289,3927585,3927334,3926992,3925268	3932771,3931991,3931584,3931188,3930808,3930347,3929962,3929529,3929171,3928808,3928345,3928136,3927372,3927101,3926610	
chr6	3933489	3942421	3934040	3942312	-	MOT4	Cre06.g278187.t1.1		3942270,3941614,3941021,3940650,3940034,3939658,3939117,3938854,3938268,3937737,3937405,3933489	3942421,3941756,3941139,3940777,3940060,3939737,3939282,3938943,3938683,3938043,3937573,3936952	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr6	3933489	3942421	3934040	3942312	-	MOT4	Cre06.g278187.t2.1		3942270,3941614,3941021,3940650,3940034,3939658,3939117,3938854,3938268,3937737,3937405,3933489	3942421,3941756,3941139,3940777,3940060,3939737,3939282,3938943,3938683,3938040,3937573,3936952	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr6	3942532	3944201	3942672	3943420	+	NUOB18	Cre06.g278188.t1.1		3942532,3942869,3943363	3942714,3943030,3944201	NADH:ubiquinone oxidoreductase (Complex I) B18-like subunit, mitochondrial; [=NDUFB7 subunit] [PMID: 15710684; PMID: 15450959]
chr6	3945752	3950723	3946449	3950157	+	Cre06.g278189.t1.1	Cre06.g278189.t1.1		3945752,3946375,3947063,3947497,3948102,3948473,3948907,3949272,3949836	3946271,3946545,3947185,3947708,3948218,3948581,3949053,3949349,3950723	
chr6	3950992	3958603	3951025	3958488	+	Cre06.g278190.t1.1	Cre06.g278190.t1.1		3950992,3951119,3953083,3953486,3954175,3954538,3955048,3955464,3955981,3956531,3956926,3957399,3957972	3951046,3952434,3953186,3953658,3954297,3954591,3955124,3955604,3956075,3956645,3957034,3957638,3958603	
chr6	3958606	3962747	3960262	3962561	-	Cre06.g278191.t1.1	Cre06.g278191.t1.1		3962303,3961001,3958606	3962747,3962118,3960746	
chr6	3962882	3967413	3963130	3966769	+	Cre06.g278192.t1.1	Cre06.g278192.t1.1		3962882,3963571,3963945,3964318,3964647,3964946,3965466,3965783,3966059,3966734	3963163,3963671,3963973,3964397,3964708,3965074,3965580,3965836,3966461,3967413	
chr6	3967418	3972521	3969537	3972115	-	Cre06.g278193.t1.1	Cre06.g278193.t1.1		3972102,3971808,3971643,3971229,3967418	3972521,3971945,3971683,3971387,3970947	
chr6	3973366	3977281	3974467	3977203	-	FAP236	Cre06.g278194.t1.1		3977149,3976905,3976539,3976318,3975953,3973366	3977281,3976973,3976703,3976352,3976160,3975310	
chr6	3977643	3979091	3978313	3979019	-	Cre06.g278195.t1.1	Cre06.g278195.t1.1		3978994,3978793,3978595,3977643	3979091,3978871,3978685,3978511	
chr6	3979192	3981946	3979319	3981503	+	Cre06.g278196.t1.1	Cre06.g278196.t1.1		3979192,3979854,3980260,3980728,3981222	3979682,3979969,3980470,3980950,3981946	
chr6	3981956	3994821	3982450	3994415	-	Cre06.g278197.t1.1	Cre06.g278197.t1.1		3994307,3994027,3993773,3993515,3993233,3992813,3992224,3991679,3991323,3990899,3990596,3989857,3989516,3989157,3988344,3988176,3987125,3985213,3984985,3981956	3994821,3994216,3993901,3993596,3993401,3993088,3992573,3991862,3991539,3991125,3990695,3990265,3989666,3989273,3988984,3988234,3988053,3986983,3985065,3984825	ts-lethal mutant arrest at G1 (PMID 29743196)
chr6	3995169	3999041	3995454	3998720	-	Cre06.g278198.t1.1	Cre06.g278198.t1.1		3998870,3998545,3998170,3997320,3996785,3996454,3995169	3999041,3998765,3998376,3997995,3997050,3996642,3995618	
chr6	3999090	4004861	3999492	4004643	-	Cre06.g278199.t1.1	Cre06.g278199.t1.1		4004784,4004280,4003849,4003419,4003018,4001992,4001663,4000872,4000499,3999934,3999090	4004861,4004646,4003911,4003600,4003177,4002873,4001772,4001438,4000639,4000191,3999661	
chr6	4812012	4822091	4812997	4821977	-	ROC66	Cre06.g278200.t1.1		4821839,4821672,4821358,4820933,4820519,4819714,4819313,4818783,4817992,4816957,4816288,4815938,4814605,4812012	4822091,4821749,4821486,4821185,4820784,4820400,4819594,4819184,4818666,4817901,4816791,4816159,4815723,4814494	Circadian clock protein containing an internal CCT domain and two amino zinc-finger domains, of which only the first one is a consensus B-box; in Matsuo et al. (2008), roc66 (rhythm of chloroplast) circadian rhythm mutant locus maps here
chr6	4005292	4007843	4005455	4007526	+	Cre06.g278201.t1.1	Cre06.g278201.t1.1		4005292,4005976,4006508,4006973,4007315	4005725,4006133,4006592,4007064,4007843	
chr6	4007860	4011145	4008233	4011057	-	Cre06.g278202.t1.1	Cre06.g278202.t1.1		4010883,4010490,4010116,4009778,4009440,4009017,4007860	4011145,4010619,4010158,4009940,4009507,4009098,4008506	
chr6	4011296	4017897	4011385	4016827	+	Cre06.g278203.t1.1	Cre06.g278203.t1.1		4011296,4011483,4011601,4011746,4012245,4013408,4013890,4014450,4014879,4015184,4016742	4011398,4011535,4011681,4011976,4013121,4013682,4014111,4014665,4014956,4016574,4017897	
chr6	4017946	4022148	4018562	4020820	+	Cre06.g278204.t1.1	Cre06.g278204.t1.1		4017946,4018808,4019169,4019568,4019905,4020234,4020527,4020779	4018638,4018994,4019386,4019755,4020045,4020363,4020556,4022148	
chr6	4022153	4028005	4023068	4027856	-	Cre06.g278205.t1.1	Cre06.g278205.t1.1		4027736,4027448,4026652,4025490,4025142,4024815,4024578,4024143,4023409,4022153	4028005,4027613,4026809,4025662,4025218,4024871,4024622,4024387,4023867,4023179	
chr6	4031066	4033220	4031448	4032537	+	Cre06.g278206.t1.1	Cre06.g278206.t1.1		4031066,4031786,4032157	4031590,4031866,4033220	
chr6	4033952	4037405	4034914	4036984	-	Cre06.g278207.t1.1	Cre06.g278207.t1.1		4035201,4033952	4037405,4034964	
chr6	4037836	4045057	4038490	4043027	+	Cre06.g278208.t1.1	Cre06.g278208.t1.1		4037836,4039048,4040166,4040959,4041939,4042487	4038565,4039120,4040256,4041121,4042001,4045057	
chr6	4046020	4052175	4048188	4051925	-	PRL8	Cre06.g278209.t1.1		4051837,4049689,4049459,4049162,4048436,4046020	4052175,4050561,4049538,4049239,4048589,4048205	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr6	4046020	4052175	4048188	4051925	-	PRL8	Cre06.g278209.t2.1		4051837,4050405,4049689,4049459,4049162,4048436,4046020	4052175,4050561,4049951,4049538,4049239,4048589,4048205	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
chr6	4052700	4058495	4053225	4058464	-	GPM1	Cre06.g278210.t1.1		4058417,4058135,4057708,4057009,4056483,4055797,4055099,4054648,4054202,4053827,4053492,4052700	4058495,4058216,4058029,4057187,4056671,4055895,4055269,4054765,4054400,4054020,4053628,4053291	Converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose; the reaction mechanism involves phosphoryl transfer from a phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme
chr6	4058596	4060878	4058694	4060266	+	Cre06.g278211.t1.1	Cre06.g278211.t1.1		4058596,4058842,4058947,4059356,4060014	4058760,4058884,4059048,4059501,4060878	
chr6	4061416	4068737	4061937	4067984	+	CGL46	Cre06.g278212.t1.1		4061416,4062610,4062840,4063095,4063403,4063776,4064227,4064621,4064958,4065246,4065601,4065954,4066261,4066786,4067131,4067496,4067771	4062492,4062726,4062985,4063275,4063621,4064086,4064500,4064784,4065078,4065422,4065825,4066134,4066565,4066938,4067364,4067597,4068737	
chr6	4069356	4071703	4069388	4071275	+	LHCA6	Cre06.g278213.t1.1		4069356,4069749,4070001,4070331,4070738,4071053	4069491,4069842,4070093,4070499,4070830,4071703	
chr6	4071766	4077557	4072436	4076804	+	Cre06.g278214.t1.1	Cre06.g278214.t1.1		4071766,4072816,4073021,4073343,4074455,4075213,4076226	4072667,4072939,4073154,4074338,4075087,4076107,4077557	
chr6	4077710	4081835	4078432	4081712	-	Cre06.g278215.t1.1	Cre06.g278215.t1.1		4081682,4081533,4081323,4081099,4080698,4080235,4079603,4078539,4077710	4081835,4081579,4081356,4081194,4080942,4080359,4079978,4079348,4078432	
chr6	4081936	4088357	4081963	4087300	+	Cre06.g278216.t1.1	Cre06.g278216.t1.1		4081936,4082144,4082616,4082948,4083167,4083852,4084790,4086065	4082007,4082216,4082725,4083052,4083668,4084594,4085898,4088357	
chr6	4088471	4090027	4088690	4089721	+	Cre06.g278217.t1.1	Cre06.g278217.t1.1		4088471,4089097,4089299	4088808,4089186,4090027	
chr6	4090045	4090585	4090255	4090505	-	Cre06.g278218.t1.1	Cre06.g278218.t1.1		4090045	4090585	
chr6	4090970	4100825	4092313	4100611	-	SSA6	Cre06.g278219.t1.1		4100590,4100449,4100098,4099734,4099276,4098825,4097768,4097265,4096603,4095655,4095071,4094463,4093424,4090970	4100825,4100508,4100300,4099920,4099362,4098950,4098578,4097405,4096890,4096408,4095284,4094741,4094341,4092907	Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr6	4100946	4107847	4100992	4107118	+	ELG38	Cre06.g278220.t1.1		4100946,4101405,4101719,4102159,4102658,4103172,4103745,4104145,4104712,4105108,4105394,4106236,4106552,4106973	4101109,4101486,4101853,4102453,4102896,4103265,4103881,4104311,4104843,4105202,4105589,4106319,4106682,4107847	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr6	4107966	4119087	4108074	4117492	+	Cre06.g278221.t1.1	Cre06.g278221.t1.1		4107966,4108297,4108472,4108625,4109522,4110311,4110985,4111443,4112138,4112486,4112959,4113709,4114477,4114843,4115438,4116040,4116438,4116792,4117366	4108226,4108396,4108546,4108706,4109634,4110530,4111122,4111570,4112218,4112602,4113172,4113905,4114607,4115098,4115529,4116169,4116530,4117085,4119087	Trehalose-6-phosphate synthase/phosphatase, a glycosyl transferase
chr6	4119205	4121260	4119210	4121009	+	Cre06.g278222.t1.1	Cre06.g278222.t1.1		4119205,4119548,4120033,4120353,4120846	4119320,4119797,4120203,4120615,4121260	Receptor of activated protein kinase C 1, component of 40S small ribosomal subunit; Also cytosolic 40S small ribosomal subunit protein RACK1; initially described [PMID: 2116589] as CBLP.  Smith and Lee 2008 [PMID:
chr6	4121270	4125365	4122223	4125106	-	Cre06.g278223.t1.1	Cre06.g278223.t1.1		4125185,4124959,4124754,4124432,4123396,4122935,4121270	4125365,4125108,4124802,4124568,4123536,4123051,4122685	
chr6	4125420	4127593	4125898	4127375	-	MRPL16	Cre06.g278224.t1.1		4127186,4126639,4126228,4125420	4127593,4127009,4126429,4125949	
chr6	4127740	4136410	4127896	4135770	+	Cre06.g278225.t1.1	Cre06.g278225.t1.1		4127740,4129004,4129432,4130013,4130361,4130871,4131147,4131458,4132168,4132528,4132948,4133472,4133910,4134231,4134647,4135097,4135556	4128180,4129115,4129566,4130156,4130486,4130916,4131256,4131745,4132282,4132673,4133199,4133612,4134028,4134315,4134830,4135352,4136410	
chr6	4136680	4147655	4137895	4147384	-	Cre06.g278226.t1.1	Cre06.g278226.t1.1		4147012,4146554,4146202,4145883,4145580,4145334,4144841,4144184,4143920,4143456,4143045,4142654,4141911,4141521,4141274,4141003,4140533,4140084,4139898,4139666,4139268,4136680	4147655,4146711,4146394,4146063,4145679,4145424,4145086,4144693,4143964,4143749,4143184,4142816,4142466,4141741,4141362,4141144,4140682,4140280,4139950,4139727,4139513,4139005	
chr6	4147710	4149925	4148245	4149799	-	Cre06.g278227.t1.1	Cre06.g278227.t1.1		4149468,4149056,4147710	4149925,4149201,4148776	
chr6	4150056	4152587	4150144	4152265	+	Cre06.g278228.t1.1	Cre06.g278228.t1.1		4150056,4151130,4151363,4151962	4150957,4151201,4151761,4152587	
chr6	4152726	4164597	4153449	4162193	+	Cre06.g278229.t1.1	Cre06.g278229.t1.1		4152726,4153778,4154096,4154367,4160255,4161765,4162126	4153497,4153903,4154139,4159992,4161590,4161840,4164597	
chr6	4164806	4172020	4166008	4170402	+	Cre06.g278230.t1.1	Cre06.g278230.t1.1		4164806,4165855,4166878,4168858,4169172,4169626,4169821,4170381	4165546,4166446,4168632,4169010,4169351,4169700,4170189,4172020	
chr6	4164806	4172020	4166008	4170402	+	Cre06.g278230.t2.1	Cre06.g278230.t2.1		4164806,4165888,4166878,4168858,4169172,4169626,4169821,4170381	4165546,4166446,4168632,4169010,4169351,4169700,4170189,4172020	
chr6	4174896	4179934	4175635	4177810	+	Cre06.g278231.t1.1	Cre06.g278231.t1.1		4174896,4176396,4176855,4177184,4177396	4176061,4176548,4177034,4177258,4179934	
chr6	4189726	4193817	4189884	4192941	+	Cre06.g278232.t1.1	Cre06.g278232.t1.1		4189726,4190346,4190787,4190967,4191363,4191831	4190230,4190651,4190873,4191139,4191539,4193817	
chr6	4194016	4198537	4194128	4198324	+	OPR60	Cre06.g278233.t1.1		4194016,4195408,4196639,4197655	4195087,4196381,4197357,4198537	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr6	4198563	4206235	4199211	4205830	-	FAP343	Cre06.g278234.t1.1		4205776,4205002,4204399,4203988,4203573,4203224,4202041,4201692,4201269,4200862,4200527,4199738,4198563	4206235,4205277,4204647,4204110,4203719,4203337,4202928,4201844,4201412,4201068,4200670,4200220,4199469	
chr6	4206377	4210075	4207372	4209925	-	Cre06.g278235.t1.1	Cre06.g278235.t1.1		4209775,4208801,4206377	4210075,4209502,4208605	
chr6	4210230	4214217	4210385	4213292	+	Cre06.g278236.t1.1	Cre06.g278236.t1.1		4210230,4210886,4211253,4211479,4211867,4212148,4212378,4212646,4212966,4213235	4210511,4211031,4211307,4211536,4211886,4212238,4212424,4212757,4213054,4214217	null-allele passenger mutation was isolated (PMID 29743196)
chr6	4214266	4220479	4214400	4220076	+	CPLD34	Cre06.g278237.t1.1		4214266,4214526,4214964,4215336,4215649,4216260,4216782	4214454,4214780,4215086,4215476,4216055,4216632,4220479	Plant-lineage-and-diatoms conserved protein with conserved carbohydrate/purine kinase, PfkB, conserved site
chr6	4220550	4221595	4220948	4221120	-	Cre06.g278238.t1.1	Cre06.g278238.t1.1		4221403,4220550	4221595,4221120	
chr6	4222107	4225405	4222494	4225327	-	SRS7	Cre06.g278239.t1.1		4225156,4224912,4224583,4224155,4223758,4222107	4225405,4224991,4224781,4224274,4223909,4222735	
chr6	4222107	4225405	4223423	4225327	-	SRS7	Cre06.g278239.t2.1		4225156,4224912,4224583,4224155,4223758,4222107	4225405,4224991,4224781,4224274,4223909,4223586	
chr6	4226001	4227565	4226230	4227535	-	Cre06.g278240.t2.1	Cre06.g278240.t2.1		4227346,4226741,4226001	4227565,4227146,4226379	
chr6	4225460	4227565	4225966	4227535	-	Cre06.g278240.t1.1	Cre06.g278240.t1.1		4227346,4226741,4226302,4225460	4227565,4227146,4226379,4226013	
chr6	4227666	4228880	4227758	4228347	+	Cre06.g278241.t1.1	Cre06.g278241.t1.1		4227666,4228239	4227818,4228880	
chr6	4228949	4230755	4229740	4230131	-	Cre06.g278242.t1.1	Cre06.g278242.t1.1		4230422,4228949	4230755,4230321	
chr6	4230890	4241305	4231379	4241098	-	Cre06.g278243.t1.1	Cre06.g278243.t1.1		4240999,4240670,4240424,4240148,4239349,4238751,4237974,4234766,4234347,4234018,4230890	4241305,4240811,4240485,4240207,4239786,4239122,4238558,4237669,4234579,4234104,4233603	
chr6	4241426	4245337	4241642	4245167	+	Cre06.g278244.t1.1	Cre06.g278244.t1.1		4241426,4242498,4243065,4243525,4243890,4244102,4244457	4242239,4242734,4243367,4243727,4243941,4244246,4245337	null-allele mutant was isolated (PMID 29743196)
chr6	4245358	4252375	4246221	4251780	-	Cre06.g278245.t1.1	Cre06.g278245.t1.1		4251711,4251357,4250926,4250678,4250261,4249910,4249649,4249263,4248857,4248393,4248061,4247562,4247060,4246544,4245358	4252375,4251614,4251052,4250771,4250384,4249987,4249697,4249348,4248921,4248486,4248168,4247656,4247283,4246723,4246265	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr6	4252506	4255051	4252800	4254223	+	Cre06.g278246.t1.1	Cre06.g278246.t1.1		4252506,4252795,4253939	4252710,4253686,4255051	
chr6	4255100	4260395	4255162	4260389	-	Cre06.g278247.t1.1	Cre06.g278247.t1.1		4259627,4259098,4258518,4258163,4257636,4256983,4256195,4255100	4260395,4259382,4258864,4258295,4257950,4257411,4256722,4255681	
chr6	4260442	4265415	4261115	4265296	-	Cre06.g278248.t1.1	Cre06.g278248.t1.1		4264321,4260442	4265415,4263905	
chr6	4265570	4270385	4266302	4270285	-	AST5	Cre06.g278249.t1.1		4270015,4269651,4269200,4268618,4268249,4267768,4267416,4267056,4265570	4270385,4269731,4269290,4268778,4268314,4267861,4267511,4267199,4266523	Putative aspartate aminotransferase (EC 2.6.1.1); appears to lack an organelle targeting sequence; subcellular localization unsure; most closely related to aminotransferases from Thermus and from Cyanobacteria; could transaminate other substrates; Putativ
chr6	4823624	4826731	4824441	4826262	-	Cre06.g278250.t1.2	Cre06.g278250.t1.2		4826216,4826007,4825873,4825735,4825465,4825160,4824818,4823624	4826731,4826128,4825942,4825778,4825537,4825320,4824988,4824645	
chr6	4823915	4826731	4824441	4826262	-	Cre06.g278250.t2.1	Cre06.g278250.t2.1		4826216,4826007,4825873,4825735,4825465,4825160,4824818,4823915	4826731,4826128,4825942,4825778,4825537,4825320,4824988,4824645	
chr6	4270533	4277604	4270827	4276979	+	Cre06.g278251.t1.1	Cre06.g278251.t1.1		4270533,4271175,4271459,4271646,4271875,4272245,4272612,4273999,4274374,4274876,4275460,4275855,4276271,4276672	4270856,4271263,4271489,4271702,4272079,4272298,4272782,4274070,4274565,4274987,4275617,4275982,4276453,4277604	
chr6	4277706	4282836	4278240	4282278	+	GOX18	Cre06.g278252.t1.1		4277706,4278208,4280354,4280686,4281266	4277969,4280166,4280493,4281063,4282836	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and glyoxal oxidase domain (incl SCOP d1k3ia1, E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain
chr6	4282862	4289255	4283887	4288995	-	Cre06.g278253.t1.1	Cre06.g278253.t1.1		4288978,4287978,4287508,4282862	4289255,4288716,4287564,4287286	
chr6	4289356	4293721	4289480	4293535	+	Cre06.g278254.t1.1	Cre06.g278254.t1.1		4289356,4289562,4289688,4289870,4290082,4290569,4291512,4291891,4292472,4293456	4289490,4289618,4289792,4290006,4290362,4291273,4291695,4292019,4292758,4293721	
chr6	4293776	4303307	4293776	4302389	+	Cre06.g278255.t1.1	Cre06.g278255.t1.1		4293776,4294123,4294774,4295704,4296207,4296661,4297101,4297990,4298674,4299178,4299758,4300327,4300625,4300986,4301569,4301942	4293953,4294278,4295295,4295829,4296343,4296802,4297310,4298145,4298814,4299318,4299946,4300446,4300774,4301189,4301652,4303307	
chr6	4303310	4307825	4303880	4307698	-	RPN8	Cre06.g278256.t1.1		4307445,4306699,4306279,4305965,4305635,4305093,4304733,4304295,4303310	4307825,4306820,4306359,4306016,4305729,4305179,4304790,4304408,4304011	26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN8 (subunit S12) (subunit 7) (PSD7) (PSMD7)
chr6	4308980	4316105	4310052	4316002	-	Cre06.g278257.t1.1	Cre06.g278257.t1.1		4315588,4315167,4314738,4314420,4313351,4312976,4312416,4311982,4308980	4316105,4315304,4314841,4314510,4314214,4313119,4312574,4312187,4311787	
chr6	4316246	4319125	4316376	4318655	+	Cre06.g278258.t1.1	Cre06.g278258.t1.1		4316246,4316688,4317918,4318344,4318634	4316517,4317657,4318012,4318397,4319125	
chr6	4319186	4324999	4319337	4324561	+	Cre06.g278259.t1.1	Cre06.g278259.t1.1		4319186,4319687,4320085,4320659,4322416,4322819,4323268,4323693,4324177	4319575,4319787,4320270,4322051,4322555,4323043,4323371,4323834,4324999	
chr6	4325010	4328795	4325144	4328693	-	Cre06.g278260.t1.1	Cre06.g278260.t1.1		4328579,4328092,4327417,4326129,4325725,4325515,4325010	4328795,4328375,4327849,4327001,4325892,4325598,4325267	
chr6	4328916	4332541	4329374	4332223	+	Cre06.g278261.t1.1	Cre06.g278261.t1.1		4328916,4329344,4330017,4330167,4330554,4330910,4331372,4331761,4331979	4329187,4329525,4330054,4330353,4330651,4331086,4331531,4331806,4332541	
chr6	4332580	4342005	4332906	4341905	-	Cre06.g278262.t1.1	Cre06.g278262.t1.1		4341803,4340813,4340480,4335488,4333795,4333341,4332580	4342005,4341639,4340574,4340253,4335347,4333662,4333068	
chr6	4342053	4345995	4342844	4345692	-	Cre06.g278263.t1.1	Cre06.g278263.t1.1		4345575,4345207,4344888,4344420,4343871,4343325,4342053	4345995,4345281,4345016,4344616,4344045,4343594,4343138	
chr6	4346087	4349267	4346179	4348800	+	Cre06.g278264.t1.1	Cre06.g278264.t1.1		4346087,4346516,4346794,4347264,4347582,4347893,4348390,4348707	4346317,4346605,4347080,4347411,4347698,4348055,4348493,4349267	
chr6	4349283	4355525	4350021	4355272	-	Cre06.g278265.t1.1	Cre06.g278265.t1.1		4355211,4354680,4352280,4352005,4351727,4351485,4351206,4350862,4350650,4349283	4355525,4354927,4354512,4352051,4351818,4351512,4351295,4350996,4350709,4350498	
chr6	4355630	4357625	4355876	4357425	-	Cre06.g278266.t1.1	Cre06.g278266.t1.1		4357425,4357180,4356939,4356614,4356540,4356236,4355630	4357625,4357314,4356991,4356747,4356548,4356369,4356074	
chr6	4357756	4361767	4357986	4360547	+	Cre06.g278267.t1.1	Cre06.g278267.t1.1		4357756,4358315,4358997,4359488,4359956	4358052,4358399,4359270,4359644,4361767	
chr6	4363194	4364595	4363550	4364537	+	Cre06.g278268.t2.1	Cre06.g278268.t2.1		4363194,4363807,4364373	4363631,4363888,4364595	
chr6	4362964	4364595	4363550	4364537	+	Cre06.g278268.t1.1	Cre06.g278268.t1.1		4362964,4363810,4364373	4363631,4363888,4364595	
chr6	4374208	4385763	4374697	4385720	-	Cre06.g278269.t1.1	Cre06.g278269.t1.1		4385520,4385318,4385037,4384846,4384315,4383924,4383684,4383375,4383105,4382742,4382227,4381522,4381075,4380884,4380465,4380245,4379972,4379457,4379119,4378807,4378485,4378206,4377597,4377154,4376884,4376586,4376141,4375536,4375129,4374208	4385763,4385421,4385146,4384936,4384649,4384140,4383747,4383547,4383229,4382908,4382531,4381884,4381304,4380954,4380654,4380311,4380132,4379723,4379292,4378929,4378598,4378304,4378020,4377417,4377029,4376762,4376367,4375904,4375290,4374974	ts-lethal mutant block at S/M (PMID 29743196)
chr6	4385818	4387603	4386630	4387594	-	Cre06.g278270.t1.1	Cre06.g278270.t1.1		4387442,4387232,4387009,4385818	4387603,4387268,4387073,4386652	
chr6	4387704	4389765	4387716	4388946	+	Cre06.g278271.t1.1	Cre06.g278271.t1.1		4387704,4387893,4388114,4388605,4388888	4387776,4388021,4388404,4388717,4389765	
chr6	4390660	4391571	4390743	4391547	+	Cre06.g278272.t1.1	Cre06.g278272.t1.1		4390660,4391537	4391492,4391571	
chr6	4395464	4402319	4397813	4402292	-	Cre06.g278273.t1.1	Cre06.g278273.t1.1		4402202,4401695,4400769,4398991,4398568,4395464	4402319,4401863,4401411,4399987,4398907,4397842	
chr6	4421834	4426269	4423791	4424359	-	Cre06.g278274.t1.1	Cre06.g278274.t1.1		4425718,4424152,4421834	4426269,4424360,4423797	
chr6	4434670	4436593	4434764	4436053	+	Cre06.g278275.t1.1	Cre06.g278275.t1.1		4434670,4435062	4434847,4436593	
chr6	4436640	4442281	4436731	4441923	+	Cre06.g278276.t1.1	Cre06.g278276.t1.1		4436640,4437009,4438222,4439721,4441894	4436893,4437455,4439641,4441796,4442281	
chr6	4452344	4455209	4453946	4454753	-	Cre06.g278277.t1.1	Cre06.g278277.t1.1		4454739,4454478,4454089,4452344	4455209,4454663,4454318,4453993	
chr6	4459244	4460349	4459673	4460118	-	Cre06.g278278.t1.1	Cre06.g278278.t1.1		4459244	4460349	
chr6	4460450	4461691	4460827	4461558	+	Cre06.g278279.t1.1	Cre06.g278279.t1.1		4460450,4461558	4461442,4461691	
chr6	4461740	4468111	4461884	4465336	+	Cre06.g278280.t1.1	Cre06.g278280.t1.1		4461740,4462047,4462719,4463046,4463201,4463502,4464676,4465324	4461988,4462657,4462984,4463111,4463365,4463982,4465169,4468111	
chr6	4474114	4474989	4474565	4474974	-	Cre06.g278281.t1.1	Cre06.g278281.t1.1		4474114	4474989	
chr6	4529834	4539699	4529886	4539497	-	Cre06.g278282.t1.1	Cre06.g278282.t1.1		4537829,4535100,4532974,4530001,4529834	4539699,4537565,4534996,4532200,4529941	
chr6	4539800	4544151	4540031	4543831	+	Cre06.g278283.t1.1	Cre06.g278283.t1.1		4539800,4540179,4542155,4542971	4540079,4541075,4542374,4544151	
chr6	4562560	4565341	4562589	4565302	+	Cre06.g278284.t1.1	Cre06.g278284.t1.1		4562560,4564171,4565273	4563508,4565175,4565341	
chr6	4574024	4581449	4574401	4581137	-	Cre06.g278285.t1.1	Cre06.g278285.t1.1		4581106,4580109,4579181,4575118,4574024	4581449,4580200,4579808,4578471,4574886	
chr6	4602520	4610791	4602708	4610616	+	Cre06.g278286.t1.1	Cre06.g278286.t1.1		4602520,4602905,4603480,4604476,4606114	4602715,4603425,4604361,4606057,4610791	
chr6	4670114	4679739	4670213	4675165	-	Cre06.g278287.t1.1	Cre06.g278287.t1.1		4679130,4675093,4674259,4671222,4670340,4670114	4679739,4675201,4674736,4674202,4670988,4670242	
chr6	4670114	4676269	4670213	4676165	-	Cre06.g278287.t2.1	Cre06.g278287.t2.1		4676117,4674259,4671222,4670340,4670114	4676269,4674736,4674202,4670988,4670242	
chr6	4672941	4679441	4673013	4678535	+	Cre06.g278288.t1.1	Cre06.g278288.t1.1		4672941,4673475,4674150,4674671,4675013,4678535	4673063,4673490,4674218,4674829,4675676,4679441	
chr6	4679789	4691449	4680245	4691406	-	Cre06.g278289.t2.1	Cre06.g278289.t2.1		4691364,4689453,4686724,4684598,4682515,4680470,4679789	4691449,4691006,4689189,4686620,4683824,4682222,4680325	
chr6	4679444	4691449	4680245	4691406	-	Cre06.g278289.t1.1	Cre06.g278289.t1.1		4691364,4689453,4686724,4684598,4682515,4680470,4679444	4691449,4691006,4689189,4686620,4683824,4682222,4680325	
chr6	4685255	4691449	4685343	4691406	-	Cre06.g278289.t3.1	Cre06.g278289.t3.1		4691364,4689453,4686724,4685483,4685255	4691449,4691006,4689189,4686620,4685372	
chr6	4691550	4693763	4691655	4692796	+	Cre06.g278290.t1.1	Cre06.g278290.t1.1		4691550,4691803	4691703,4693763	
chr6	4693810	4699563	4694611	4698524	+	Cre06.g278291.t1.1	Cre06.g278291.t1.1		4693810,4694595,4696750,4697799	4694368,4695417,4697096,4699563	
chr6	4706124	4715489	4707008	4715169	-	Cre06.g278292.t1.1	Cre06.g278292.t1.1		4715161,4714825,4714350,4713419,4712997,4712268,4711731,4710963,4710220,4709108,4708298,4707281,4706124	4715489,4714941,4714539,4713969,4713343,4712433,4712164,4711479,4710388,4709907,4709069,4708079,4707008	
chr6	4706124	4715489	4707008	4714477	-	Cre06.g278293.t1.1	Cre06.g278293.t1.1		4715161,4714849,4714350,4713899,4713540,4713277,4712997,4712268,4711731,4710963,4710220,4709108,4708298,4707281,4706124	4715489,4714941,4714539,4713969,4713579,4713343,4713051,4712433,4712164,4711479,4710388,4709907,4709069,4708079,4707008	
chr6	4724784	4726799	4725533	4726340	-	Cre06.g278294.t1.1	Cre06.g278294.t1.1		4726326,4726065,4725676,4724784	4726799,4726250,4725905,4725580	
chr6	4726900	4733411	4727537	4733312	+	Cre06.g278295.t1.1	Cre06.g278295.t1.1		4726900,4727482,4728349,4729134,4729643,4729984,4731766,4732613,4732943,4733312	4727295,4727613,4729073,4729571,4729924,4730610,4732534,4732877,4733196,4733411	
chr6	4733460	4738351	4733638	4737093	+	Cre06.g278296.t1.1	Cre06.g278296.t1.1		4733460,4733801,4734473,4734958,4735259,4736433,4737081	4733742,4734411,4734741,4735122,4735739,4736926,4738351	
chr6	4738400	4743541	4739452	4740654	+	Cre06.g278297.t1.1	Cre06.g278297.t1.1		4738400,4738988,4739390,4739960,4740350,4740586	4738768,4739080,4739579,4740030,4740389,4743541	
chr6	4743610	4746711	4743650	4744510	+	Cre06.g278298.t1.1	Cre06.g278298.t1.1		4743610,4744019,4744503	4743706,4744168,4746711	
chr6	4751503	4752511	4751818	4752479	-	Cre06.g278299.t1.1	Cre06.g278299.t1.1		4751503	4752511	
chr6	4828652	4831443	4829225	4831382	-	Cre06.g278300.t1.2	Cre06.g278300.t1.2		4831309,4831135,4830834,4830440,4830227,4829942,4828652	4831443,4831193,4830908,4830520,4830342,4830098,4829750	
chr6	4766908	4769021	4768309	4768502	-	Cre06.g278301.t1.1	Cre06.g278301.t1.1		4766908	4769021	
chr6	4780846	4790961	4783190	4790868	-	Cre06.g278302.t1.1	Cre06.g278302.t1.1		4790421,4788024,4787218,4787029,4786776,4784824,4780846	4790961,4789395,4787259,4787083,4786860,4786510,4783996	
chr6	4789757	4790961	4790258	4790868	-	Cre06.g278302.t2.1	Cre06.g278302.t2.1		4789757	4790961	
chr6	4831562	4834595	4831617	4834185	+	AGD1	Cre06.g278350.t1.1		4831562,4831873,4832291,4832540,4833270,4833693	4831792,4832030,4832389,4832647,4833449,4834595	putative arogenate/prephenate dehydrogenase, similarity to putative arogenate dehydrogenase from rice (GenBank BAD53632); predicted plastidic by Target-P and by homology
chr6	4834936	4836577	4835729	4836479	-	Cre06.g278400.t1.2	Cre06.g278400.t1.2		4836407,4835974,4834936	4836577,4836192,4835771	
chr6	4836702	4840968	4836907	4839958	+	PDK2	Cre06.g278451.t1.1		4836702,4837748,4838073,4838273,4838478,4838737,4838928,4839128,4839517,4839846	4837550,4837920,4838137,4838372,4838648,4838802,4838990,4839247,4839686,4840968	Inhibits pyruvate dehydrogenase by phosphorylation
chr6	4841022	4844535	4841101	4844058	+	Cre06.g278500.t1.1	Cre06.g278500.t1.1		4841022,4841399,4841696,4842202,4842547,4842933,4843352,4843662	4841242,4841472,4841837,4842375,4842622,4843104,4843472,4844535	
chr6	4844602	4848423	4844998	4848404	+	Cre06.g278550.t1.2	Cre06.g278550.t1.2		4844602,4845851,4846202,4846591,4846927,4847409,4847887	4845686,4846027,4846447,4846792,4847175,4847681,4848423	
chr6	4848426	4851441	4849895	4851364	-	Cre06.g278585.t1.2	Cre06.g278585.t1.2		4851217,4848426	4851441,4851143	
chr6	4851542	4853023	4851978	4852429	+	Cre06.g278600.t1.2	Cre06.g278600.t1.2		4851542,4851912	4851751,4853023	
chr6	4853029	4857868	4853597	4857772	-	Cre06.g278650.t1.1	Cre06.g278650.t1.1		4857684,4857407,4857105,4856917,4855852,4855514,4855120,4853932,4853029	4857868,4857462,4857185,4857006,4856841,4855711,4855338,4854983,4853790	null-allele mutant was isolated (PMID 29743196)
chr6	4857988	4862703	4858100	4862287	+	Cre06.g278700.t1.1	Cre06.g278700.t1.1		4857988,4858268,4858875,4859251,4859691,4859967,4860200,4860433,4860724,4860881,4861047,4861386,4861600,4861786,4862050	4858112,4858507,4859101,4859440,4859831,4860087,4860306,4860564,4860763,4860924,4861211,4861496,4861679,4861843,4862703	
chr6	4862848	4866301	4863444	4866267	-	UCP1	Cre06.g278750.t1.2		4866183,4866029,4865881,4865670,4865354,4865116,4864715,4864246,4863998,4863676,4862848	4866301,4866096,4865954,4865722,4865476,4865201,4864808,4864306,4864066,4863824,4863480	Belong to mitochondrial substrate carrier family
chr6	4866408	4868824	4866515	4868406	+	Cre06.g278800.t1.2	Cre06.g278800.t1.2		4866408,4866821,4867148,4867441,4867665,4867922,4868316	4866648,4867002,4867267,4867519,4867750,4868044,4868824	
chr6	4868826	4870691	4868858	4870484	-	MND1	Cre06.g278850.t1.1		4870383,4870186,4869969,4869715,4869389,4869139,4868826	4870691,4870237,4870055,4869822,4869503,4869183,4868992	similar to mammalian GAJ protein
chr6	4871192	4875903	4871239	4875635	+	Cre06.g278900.t1.1	Cre06.g278900.t1.1		4871192,4871364,4871535,4871837,4872086,4872759,4873868,4874663,4875070,4875455	4871301,4871451,4871678,4871989,4872584,4873742,4874110,4874938,4875311,4875903	
chr6	4875906	4879591	4876021	4879556	-	Cre06.g278950.t1.1	Cre06.g278950.t1.1		4879512,4879300,4879008,4878648,4878356,4877400,4875906	4879591,4879376,4879169,4878884,4878553,4878229,4877284	
chr6	4879712	4881961	4879899	4881406	+	PBA1	Cre06.g279000.t1.2		4879712,4880185,4880383,4880626,4880877,4881255	4879987,4880270,4880493,4880745,4881028,4881961	20S proteasome beta subunit A1; (PRE3) peptidylglutamyl hydrolyzing activity
chr6	4883292	4887133	4883469	4886422	+	Cre06.g279050.t1.2	Cre06.g279050.t1.2		4883292,4884315,4885237,4885480,4885799	4883478,4885051,4885336,4885564,4887133	
chr6	4887160	4888531	4887579	4888288	-	DPY30	Cre06.g279100.t1.2		4888278,4888091,4887918,4887160	4888531,4888161,4887995,4887753	Chromatin modifying protein complex member, identified by mutations in C. elegans defective in male sensory behavior. Identified in the flagellar and basal body proteome as FBB12 [PMID: 15137946]. Transcript upregulated during flagellar regeneration [PMID: 15738400]
chr6	4888632	4894688	4888753	4894206	+	TSD2	Cre06.g279150.t1.2		4888632,4888963,4889348,4889706,4890146,4890517,4890825,4891145,4891474,4891819,4892178,4892443,4893689,4894018	4888789,4889061,4889440,4889774,4890232,4890657,4890908,4891282,4891679,4891964,4892275,4892555,4893828,4894688	EC 6.1.1.12; aspartate-tRNA ligase, similar to eukaryotic aspartyl t-RNA synthetases (e.g., Medicago: GenBank ABE93908); probably cytosolic, based on Target-P
chr6	4894716	4902391	4895065	4902364	-	Cre06.g279183.t1.1	Cre06.g279183.t1.1		4902262,4902110,4898674,4897676,4894716	4902391,4902187,4902018,4898547,4897544	ts-lethal mutant was isolated (PMID 29743196)
chr6	4902466	4904121	4902755	4904049	-	Cre06.g279216.t1.1	Cre06.g279216.t1.1		4903850,4902466	4904121,4903261	
chr6	4904242	4906423	4904371	4906019	+	PYM1	Cre06.g279250.t1.2		4904242,4904878,4905260,4905521,4905967	4904530,4904923,4905347,4905748,4906423	Exon Junction Complex dissociation factor; mainly located in the cytoplasm where it dissociates MAGOH/RBM8A from EIF4A3; human PYM has been shown to associate with the 40S ribosomal subunit
chr6	4906472	4909974	4906511	4909413	+	Cre06.g279300.t1.2	Cre06.g279300.t1.2		4906472,4906874,4907156,4907501,4907869,4908199,4908414,4908764,4909207	4906610,4907056,4907299,4907668,4908024,4908302,4908567,4908968,4909974	
chr6	4910062	4914483	4910565	4914105	+	Cre06.g279350.t1.1	Cre06.g279350.t1.1		4910062,4910548,4910996,4911440,4911776,4912092,4912313,4912687,4912967,4913376	4910416,4910754,4911202,4911603,4911947,4912165,4912559,4912839,4913221,4914483	
chr6	4914562	4919163	4914828	4918718	+	Cre06.g279400.t1.2	Cre06.g279400.t1.2		4914562,4915286,4915480,4915662,4915840,4916066,4916345,4916735,4917008,4917252,4917660,4917962,4918295	4915013,4915368,4915524,4915724,4915895,4916194,4916518,4916833,4917089,4917377,4917774,4918097,4919163	
chr6	4919176	4923171	4919785	4921751	-	Cre06.g279450.t1.1	Cre06.g279450.t1.1		4922950,4921161,4920876,4920648,4919176	4923171,4921900,4920975,4920732,4920408	closely related to nearby Cre06.g279050
chr6	4924352	4929276	4924612	4929185	-	MUT68	Cre06.g279474.t1.1		4929128,4928738,4928488,4928134,4927832,4927553,4927316,4926984,4926712,4926207,4925997,4924352	4929276,4928891,4928585,4928286,4927930,4927630,4927450,4927135,4926838,4926598,4926075,4925863	Class-I RNA nucleotidyl transferase (noncanonical Poly-A polymerase, ncPAP); acts as a TUTase, adding untemplated uridines to the 3' end of miRNA and siRNA, stimulating their degradation by exosome subunit RRP6; has orthologs in Chlorophyceae only; closely related to PAP6 and PAP10
chr6	4929368	4933410	4929485	4932045	+	CPL6	Cre06.g279500.t1.1		4929368,4929786,4930846,4931182,4931555,4931861	4929685,4929852,4930959,4931368,4931711,4933410	
chr6	4933432	4937317	4933782	4937176	-	Cre06.g279550.t1.1	Cre06.g279550.t1.1		4937010,4936479,4936167,4935730,4935372,4935069,4934622,4934182,4933432	4937317,4936833,4936254,4935996,4935510,4935263,4934898,4934474,4933979	
chr6	4937418	4944479	4937778	4943088	+	Cre06.g279600.t1.1	Cre06.g279600.t1.1		4937418,4938222,4941406,4941726	4938052,4941255,4941559,4944479	
chr6	4944482	4947467	4944780	4947158	-	OPR24	Cre06.g279650.t1.1		4947082,4946659,4946376,4945932,4944482	4947467,4946861,4946419,4946127,4945752	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 23 codons at 5'-end: MWNRVLAARPCPGTPRGRMLEAA
chr6	4947958	4967301	4948389	4966330	+	Cre06.g279700.t1.1	Cre06.g279700.t1.1		4947958,4948657,4949003,4949372,4949619,4949878,4950247,4950456,4950730,4950946,4951196,4951585,4951885,4952065,4952242,4953010,4953448,4954602,4954951,4955320,4955567,4955832,4956201,4956410,4956684,4956903,4957153,4957542,4958003,4958180,4958948,4959386,4960540,4960886,4961255,4961502,4961767,4962136,4962345,4962619,4962838,4963084,4963473,4963767,4963934,4964111,4964879,4965317	4948443,4948812,4949265,4949483,4949763,4950133,4950331,4950640,4950829,4951076,4951461,4951747,4951917,4952122,4952823,4953334,4954388,4954757,4955213,4955431,4955711,4956087,4956285,4956594,4956783,4957033,4957418,4957704,4958060,4958761,4959272,4960326,4960695,4961148,4961366,4961646,4962022,4962220,4962529,4962718,4962968,4963349,4963635,4963799,4963991,4964692,4965203,4967301	
chr6	4967312	4970409	4967530	4970266	-	MAP1A	Cre06.g279750.t1.2		4970225,4970014,4969659,4969406,4969148,4968751,4968526,4968192,4967924,4967312	4970409,4970107,4969808,4969487,4969243,4968869,4968608,4968362,4968014,4967755	Involved in N-terminal maturation of proteins; cytosolic; MetAP1, Peptidase M
chr6	4970518	4971979	4970695	4971253	+	Cre06.g279800.t1.2	Cre06.g279800.t1.2		4970518,4971023	4970744,4971979	
chr6	4971982	4975127	4972497	4975029	-	Cre06.g279850.t1.2	Cre06.g279850.t1.2		4975023,4974697,4973804,4973610,4973362,4973135,4972786,4971982	4975127,4974801,4974007,4973642,4973486,4973214,4972930,4972615	Short chain dehydrogenase belonging to the extended family [PMID: 12230552]. Similarity to the N-terminal domain of Tic62 [PMID: 17374152].
chr6	4975228	4978682	4975462	4978222	+	VFL3	Cre06.g279900.t1.1		4975228,4975552,4975798,4976421,4976656,4976878,4977039,4977468,4978052	4975483,4975678,4976303,4976537,4976774,4976955,4977289,4977890,4978682	Protein required for templated centriole assembly; mutation in this gene causes loss of the templated centriole assembly pathway without eliminating de novo assembly [PMID: 11267867]; MOT14, gene identified by comparative genomics as being present only in organisms having motile cilia
chr6	4978702	4985057	4979924	4984220	-	Cre06.g279950.t1.1	Cre06.g279950.t1.1		4984917,4984718,4984537,4984389,4984143,4983917,4983655,4983360,4981634,4981344,4981073,4980835,4980384,4980142,4978702	4985057,4984760,4984601,4984424,4984228,4984001,4983776,4983516,4983163,4981511,4981225,4980929,4980654,4980279,4979951	
chr6	4985112	4987217	4985144	4986918	-	Cre06.g279976.t1.1	Cre06.g279976.t1.1		4986795,4986336,4986171,4985827,4985585,4985322,4985112	4987217,4986410,4986242,4985956,4985591,4985392,4985191	
chr6	4995458	4997799	4995771	4997154	+	Cre06.g280000.t1.1	Cre06.g280000.t1.1		4995458,4996085,4996744,4997154	4995804,4996448,4996799,4997799	
chr6	4995900	4997799	4996078	4997154	+	Cre06.g280000.t2.1	Cre06.g280000.t2.1		4995900,4996744,4997154	4996448,4996799,4997799	
chr6	4995900	4997799	4996078	4996974	+	Cre06.g280000.t3.1	Cre06.g280000.t3.1		4995900,4996744,4996974	4996448,4996799,4997799	
chr6	4997810	5007757	4999055	5007522	-	XRN1	Cre06.g280050.t1.2		5007518,5007130,5006871,5006581,5006347,5005954,5005686,5005380,5004835,5004454,5004148,5003822,5003539,5003138,5002888,5002260,5001862,5001278,4997810	5007757,5007384,5006941,5006640,5006461,5006215,5005810,5005561,5005158,5004642,5004300,5004049,5003679,5003389,5002998,5002752,5002056,5001646,5001112	Homologue of yeast 5'-3' exoribonucleases Xrn1p (cytoplasmic) and Rat1p (nuclear); probably organelle targeted
chr6	5007866	5009966	5008065	5009590	+	Cre06.g280100.t1.2	Cre06.g280100.t1.2		5007866,5008351,5008576,5008865,5009062,5009371	5008192,5008450,5008684,5008906,5009175,5009966	
chr6	5010016	5012567	5010093	5012052	+	PSBP9	Cre06.g280150.t1.2		5010016,5010307,5010586,5010990,5011212,5011456,5011769,5011953	5010201,5010348,5010751,5011075,5011254,5011537,5011838,5012567	similar to 23 kDa subunit of the oxygen evolving system of photosystem II
chr6	5013025	5016295	5013878	5016243	-	Cre06.g280200.t1.1	Cre06.g280200.t1.1		5016122,5015823,5015535,5015246,5014979,5013025	5016295,5015913,5015625,5015312,5015103,5014829	
chr6	5016350	5018593	5016758	5018520	-	Cre06.g280227.t1.2	Cre06.g280227.t1.2		5018430,5016350	5018593,5018210	
chr6	5018731	5023855	5019052	5023731	-	Cre06.g280250.t1.2	Cre06.g280250.t1.2		5023490,5023083,5022661,5022443,5022082,5021590,5021267,5020928,5020489,5020192,5019852,5019505,5018731	5023855,5023249,5022828,5022492,5022235,5021870,5021401,5021078,5020692,5020237,5019965,5019702,5019285	
chr6	5023908	5031735	5024918	5031637	-	Cre06.g280300.t1.1	Cre06.g280300.t1.1		5031460,5031183,5030963,5030728,5028601,5028171,5027799,5027360,5026887,5026403,5026099,5025721,5025377,5023908	5031735,5031283,5031084,5030839,5030642,5028372,5027949,5027557,5027103,5026608,5026226,5025905,5025491,5025105	null-allele mutant was isolated (PMID 29743196)
chr6	5031836	5038368	5032255	5038206	+	Cre06.g280350.t1.2	Cre06.g280350.t1.2		5031836,5032460,5032747,5033056,5033479,5033877,5034191,5034435,5034845,5035471,5035957,5036276,5036890,5037234,5037773,5038041	5032305,5032538,5032847,5033224,5033634,5034028,5034277,5034573,5035177,5035636,5036052,5036709,5037058,5037519,5037851,5038368	
chr6	5038370	5043005	5038748	5042948	-	Cre06.g280385.t1.1	Cre06.g280385.t1.1		5040530,5040103,5038370	5043005,5040239,5039883	
chr6	5043060	5049605	5043501	5049569	-	PAP6	Cre06.g280420.t1.2		5049425,5049013,5048768,5048518,5048117,5047790,5047392,5047019,5046143,5045497,5045238,5044361,5043060	5049605,5049165,5048842,5048622,5048263,5047867,5047520,5047218,5046269,5045948,5045316,5045053,5044149	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; related to MUT68, PAP10 and PAP7
chr6	5049810	5056785	5050627	5056415	-	Cre06.g280450.t1.1	Cre06.g280450.t1.1		5056295,5056072,5055862,5055677,5055546,5055196,5054900,5054684,5054549,5054364,5054176,5052458,5052135,5051882,5051669,5051300,5051073,5050877,5049810	5056785,5056218,5055909,5055758,5055552,5055266,5055013,5054748,5054584,5054449,5054260,5054035,5052302,5052034,5051763,5051513,5051129,5050951,5050654	
chr6	5057340	5065055	5058142	5064781	-	Cre06.g280475.t1.2	Cre06.g280475.t1.2		5064760,5064183,5063919,5063640,5063401,5063095,5062667,5062286,5061999,5061393,5061181,5060732,5060405,5060027,5059599,5059153,5057340	5065055,5064251,5064074,5063749,5063510,5063261,5062820,5062444,5062138,5061839,5061299,5061044,5060573,5060197,5059881,5059450,5059015	
chr6	5065106	5075675	5065573	5075443	-	Cre06.g280500.t1.1	Cre06.g280500.t1.1		5075306,5075060,5074916,5074711,5074510,5073734,5072407,5072004,5071673,5071361,5070792,5070175,5067175,5066681,5065106	5075675,5075109,5074967,5074826,5074581,5073914,5072601,5072210,5071822,5071505,5071064,5070612,5069997,5067057,5066471	related to NLI interacting factor
chr6	5065106	5075675	5065573	5075443	-	Cre06.g280500.t2.1	Cre06.g280500.t2.1		5075306,5075060,5074916,5074711,5073734,5072407,5072004,5071673,5071361,5070792,5070175,5067175,5066681,5065106	5075675,5075109,5074967,5074826,5073914,5072601,5072210,5071822,5071505,5071064,5070612,5069997,5067057,5066471	related to NLI interacting factor
chr6	5075776	5078098	5075929	5077903	+	Cre06.g280550.t1.1	Cre06.g280550.t1.1		5075776,5076012,5076585,5076988,5077354	5075947,5076356,5076723,5077115,5078098	
chr6	5078100	5082205	5078640	5082171	-	GEX1	Cre06.g280600.t1.2		5082035,5081846,5081669,5081440,5081070,5080795,5080286,5079921,5078999,5078100	5082205,5081937,5081713,5081588,5081235,5080914,5080582,5080085,5079761,5078750	conserved nuclear enveloppe protein, necessary for rapid nuclear fusion during fertilization
chr6	5082316	5084681	5082393	5084025	+	CGL59	Cre06.g280650.t1.2		5082316,5082584,5082729,5082957,5083298,5083564,5083843	5082509,5082660,5082790,5083097,5083426,5083663,5084681	
chr6	5084690	5088285	5084904	5088100	-	Cre06.g280700.t1.2	Cre06.g280700.t1.2		5088021,5087583,5087372,5086995,5086805,5086536,5086118,5085755,5085352,5084690	5088285,5087686,5087394,5087064,5086878,5086620,5086359,5085867,5085458,5085141	
chr6	5088484	5090265	5088826	5090182	-	Cre06.g280750.t1.1	Cre06.g280750.t1.1		5090179,5089956,5089649,5089414,5089124,5088484	5090265,5090015,5089759,5089428,5089228,5088877	
chr6	5090406	5093137	5090548	5092792	+	Cre06.g280800.t1.2	Cre06.g280800.t1.2		5090406,5091508,5091884,5092347	5091206,5091668,5092080,5093137	
chr6	5093145	5094981	5093553	5094842	-	PBG1	Cre06.g280850.t1.1		5094143,5093145	5094981,5093712	
chr6	5095106	5097737	5095327	5097121	+	VTI2	Cre06.g280900.t1.1		5095106,5095476,5095607,5095838,5096255,5096580,5096893	5095389,5095536,5095723,5095990,5096347,5096642,5097737	Expressed Protein. Similar to GOS1/GS28, Qb-SNAREs involved in intra-Golgi trafficking.
chr6	5095106	5097737	5095327	5097121	+	VTI2	Cre06.g280900.t2.1		5095106,5095476,5095607,5095841,5096255,5096580,5096893	5095389,5095536,5095723,5095990,5096347,5096642,5097737	Expressed Protein. Similar to GOS1/GS28, Qb-SNAREs involved in intra-Golgi trafficking.
chr6	5095106	5097737	5095327	5097121	+	VTI2	Cre06.g280900.t3.1		5095106,5095479,5095607,5095838,5096255,5096580,5096893	5095389,5095536,5095723,5095990,5096347,5096642,5097737	Expressed Protein. Similar to GOS1/GS28, Qb-SNAREs involved in intra-Golgi trafficking.
chr6	5097740	5104585	5098834	5104136	-	PYK2	Cre06.g280950.t1.2		5104416,5104057,5103585,5103272,5102744,5102088,5101872,5101625,5101280,5100793,5100271,5099731,5099267,5097740	5104585,5104142,5103808,5103337,5102912,5102254,5101930,5101703,5101381,5101044,5100546,5100005,5099472,5099079	Putative Pyruvate Kinase; EC 2.7.1.40; catalyses the final step in glycolysis, which is the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP; probably cytosolic
chr6	5104746	5108168	5104902	5107636	+	Cre06.g281000.t1.1	Cre06.g281000.t1.1		5104746,5105299,5105592,5106006,5106349,5106610,5106825,5107089,5107402	5105082,5105424,5105747,5106152,5106414,5106711,5106908,5107184,5108168	
chr6	5108216	5112541	5108576	5111983	+	VPS5A	Cre06.g281050.t1.2		5108216,5108662,5109293,5109781,5110180,5110368,5110786,5111036,5111481,5111808	5108579,5108751,5109454,5109873,5110248,5110538,5110860,5111293,5111617,5112541	Expressed Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking.
chr6	5112630	5117727	5112798	5116893	+	MUT9	Cre06.g281100.t1.1		5112630,5112966,5113338,5113613,5113821,5114007,5114328,5114937,5115376,5115643,5115991,5116444,5116843	5112880,5113249,5113475,5113692,5113890,5114134,5114619,5115149,5115512,5115793,5116266,5116642,5117727	Serine/threonine protein kinase involved in transcriptional gene silencing (AAL60199) [PMID: 11782532]
chr6	5118460	5120495	5118894	5120359	-	Cre06.g281150.t1.2	Cre06.g281150.t1.2		5119824,5119596,5118460	5120495,5119672,5119383	
chr6	5120611	5131265	5120891	5130978	-	Cre06.g281200.t1.1	Cre06.g281200.t1.1		5130888,5130705,5129787,5129380,5129034,5128728,5128422,5128087,5127458,5127023,5126708,5126360,5125945,5125677,5125392,5125050,5124705,5124348,5124036,5123527,5123285,5122946,5122802,5122512,5122271,5122091,5121873,5121541,5120611	5131265,5130791,5130577,5129620,5129157,5128909,5128559,5128270,5127897,5127295,5126840,5126544,5126150,5125832,5125547,5125293,5124949,5124575,5124279,5123951,5123411,5123130,5122844,5122685,5122377,5122162,5121960,5121700,5121406	
chr6	5131766	5139867	5131932	5139047	+	CFA1	Cre06.g281250.t1.2		5131766,5132428,5132824,5133245,5133544,5133956,5134460,5134836,5135213,5135527,5136028,5136287,5136671,5137012,5137466,5138299,5138742	5132021,5132546,5133029,5133385,5133673,5134198,5134685,5134997,5135376,5135811,5136139,5136494,5136870,5137251,5138037,5138502,5139867	Uses AdoMet to introduce a methylene group into fatty acids
chr6	5139870	5140935	5139891	5140604	-	Cre06.g281286.t1.2	Cre06.g281286.t1.2		5140570,5140288,5139870	5140935,5140477,5140096	
chr6	5140984	5142595	5141458	5142435	-	Cre06.g281300.t1.2	Cre06.g281300.t1.2		5142234,5140984	5142595,5141857	
chr6	5142746	5151728	5142812	5151575	+	LON1	Cre06.g281350.t1.2		5142746,5143269,5143795,5144360,5144678,5144955,5145343,5145684,5146030,5146498,5146980,5147481,5147973,5148398,5148880,5149529,5150168,5151102,5151452	5142967,5143532,5143936,5144443,5144752,5145045,5145457,5145756,5146142,5146699,5147149,5147540,5148183,5148491,5149055,5149886,5150671,5151247,5151728	belongs to MEROPS peptidase family S16 of ATP-dependent proteases; similar to mitochondrial LON protease homolog from Arabidopsis thaliana
chr6	5151776	5156417	5151990	5156192	+	NAH1	Cre06.g281400.t1.1		5151776,5152410,5152942,5153217,5153453,5153698,5154028,5154477,5154687,5155033,5155226,5155415	5152095,5152565,5153032,5153272,5153516,5153849,5154180,5154590,5154850,5155083,5155280,5156417	Similar to Na(+)/H(+) antiporter [Saccharomyces cerevisiae]
chr6	5156420	5161285	5156872	5160715	-	SRR22	Cre06.g281450.t1.1		5160618,5160404,5159852,5156420	5161285,5160503,5159969,5159314	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr6	5161340	5166965	5161357	5166603	-	OPR25	Cre06.g281500.t1.1		5163630,5161868,5161340	5166965,5163214,5161555	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 99 codons at 5'-end: MRAAAAADRGCHANWTRQALRPPRLVKSTLRQLVAHVISNNSAGSWDSRRGLSSPASPTLDAPLLTATIKRARHVNQLFTACSSNWDVLNHIHIAAALA
chr6	5167026	5172455	5167435	5172327	-	Cre06.g281526.t1.2	Cre06.g281526.t1.2		5171973,5171493,5170942,5170576,5167749,5167026	5172455,5171597,5171028,5170743,5170297,5167622	
chr6	5172576	5175246	5172765	5174876	+	Cre06.g281563.t1.1	Cre06.g281563.t1.1		5172576,5173773,5174040,5174717	5173623,5173814,5174243,5175246	
chr6	5175307	5180855	5176362	5180280	-	LCI23	Cre06.g281600.t1.2		5180420,5180153,5179844,5179524,5179065,5178600,5177962,5175307	5180855,5180297,5180017,5179667,5179218,5178778,5178283,5177725	Septin-like protein; Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr6	5175307	5180855	5176362	5180280	-	LCI23	Cre06.g281600.t2.1		5180420,5180153,5179844,5179524,5179065,5178600,5177962,5175307	5180855,5180297,5180014,5179667,5179218,5178778,5178283,5177725	Septin-like protein; Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]
chr6	5180920	5183165	5182160	5183021	-	Cre06.g281650.t1.2	Cre06.g281650.t1.2		5182922,5180920	5183165,5182508	
chr6	5184380	5192385	5184933	5192351	-	Cre06.g281700.t1.1	Cre06.g281700.t1.1		5192231,5191631,5191477,5191215,5190970,5190807,5190606,5190379,5190173,5190021,5189705,5189505,5189078,5188427,5187298,5187126,5186764,5186386,5186136,5185696,5185309,5185132,5184380	5192385,5191780,5191512,5191311,5190998,5190828,5190672,5190449,5190237,5190056,5189790,5189589,5189359,5188943,5188274,5187173,5186931,5186538,5186230,5185909,5185365,5185203,5184993	null-allele mutant was isolated (PMID 29743196)
chr6	5192432	5194345	5192890	5194000	-	Cre06.g281750.t1.2	Cre06.g281750.t1.2		5193937,5193756,5193569,5193169,5192432	5194345,5193821,5193615,5193289,5192968	
chr6	5194536	5198647	5194597	5198201	+	Cre06.g281766.t1.1	Cre06.g281766.t1.1		5194536,5194919,5195257,5195898,5197889	5194716,5195153,5195715,5197724,5198647	
chr6	5194536	5198647	5194743	5198201	+	Cre06.g281766.t2.1	Cre06.g281766.t2.1		5194536,5194919,5195257,5195898,5197889	5194784,5195153,5195715,5197724,5198647	
chr6	5198725	5202007	5199847	5201878	-	Cre06.g281800.t1.2	Cre06.g281800.t1.2		5201753,5201517,5201220,5200682,5200238,5198725	5202007,5201666,5201412,5200872,5200385,5199913	
chr6	5202106	5203493	5202355	5202975	+	Cre06.g281850.t1.2	Cre06.g281850.t1.2		5202106,5202551,5202804	5202393,5202596,5203493	
chr6	5203546	5207717	5203671	5207127	+	ZIP7	Cre06.g281900.t1.2		5203546,5203986,5204740,5205373,5206385,5206729	5203731,5204516,5205161,5206249,5206574,5207717	
chr6	5207720	5212475	5207937	5212361	-	Cre06.g281950.t1.1	Cre06.g281950.t1.1		5211805,5211423,5210813,5210383,5209949,5207720	5212475,5211508,5211283,5210613,5210110,5209647	
chr6	5212616	5224459	5212770	5222972	+	STA3	Cre06.g282000.t1.1		5212616,5212975,5213520,5213842,5214464,5214784,5215708,5216596,5217093,5217611,5218109,5218598,5219011,5219546,5220289,5220749,5221258,5221844,5222801	5212837,5213069,5213594,5213964,5214564,5215015,5216090,5216731,5217260,5217704,5218380,5218681,5219193,5219773,5220474,5221002,5221528,5222488,5224459	
chr6	5212616	5224459	5212770	5222972	+	STA3	Cre06.g282000.t2.1		5212616,5212975,5213520,5213842,5214464,5214784,5215816,5216596,5217093,5217611,5218109,5218598,5219011,5219546,5220289,5220749,5221258,5221844,5222801	5212837,5213069,5213594,5213964,5214564,5215015,5216090,5216731,5217260,5217704,5218380,5218681,5219193,5219773,5220474,5221002,5221528,5222488,5224459	
chr6	5224576	5228268	5224614	5227879	+	Cre06.g282050.t1.2	Cre06.g282050.t1.2		5224576,5224748,5225353,5226124,5226615,5227015,5227447	5224626,5224970,5225768,5226421,5226715,5227155,5228268	
chr6	5228467	5230335	5228715	5230229	-	Cre06.g282100.t1.2	Cre06.g282100.t1.2		5230092,5229758,5229175,5228467	5230335,5229937,5229450,5228926	
chr6	5230410	5233015	5231017	5232759	-	CNX1G	Cre06.g282150.t1.1		5232504,5231752,5230410	5233015,5231894,5231252	Homolog to E-domain of molybdopterin biosynthesis CNX1 protein (Involved in molybdenum cofactor biosynthesis. May play a role in molybdenum transfer to molybdopterin); homologous to Arabidopsis thaliana Cnx1G
chr6	5233146	5235035	5233305	5234008	+	SNF7	Cre06.g282200.t1.2		5233146	5235035	Expressed Protein. Similar to SNF7, a SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes)
chr6	5235086	5237568	5235146	5237456	+	Cre06.g282250.t1.1	Cre06.g282250.t1.1		5235086,5235465,5235775,5236231,5236801	5235311,5235544,5235985,5236556,5237568	Related to GCN5
chr6	5237796	5242387	5237830	5241851	+	Cre06.g282251.t1.2	Cre06.g282251.t1.2		5237796,5238423,5238948,5239287,5239933,5241514	5238046,5238701,5239000,5239451,5240673,5242387	
chr6	5243406	5247638	5244097	5245563	+	Cre06.g282300.t1.2	Cre06.g282300.t1.2		5243406,5244509,5244982	5244396,5244633,5247638	
chr6	5248106	5254667	5248293	5254315	+	Cre06.g282350.t1.1	Cre06.g282350.t1.1		5248106,5248534,5249561,5252113,5252581,5252958,5253309,5253977,5254242	5248352,5249236,5251833,5252254,5252658,5253068,5253739,5254066,5254667	
chr6	5254670	5257135	5255116	5256888	-	Cre06.g282400.t1.2	Cre06.g282400.t1.2		5256876,5256427,5254670	5257135,5256556,5255817	
chr6	5257236	5263057	5257528	5262753	+	PHX11	Cre06.g282450.t1.2		5257236,5258625,5259037,5259467,5260086,5260762,5261088,5261592,5262246,5262632	5258387,5258801,5259265,5259906,5260507,5260873,5261251,5261725,5262395,5263057	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate
chr6	5263768	5265705	5263833	5265572	-	RPL23A	Cre06.g282500.t1.2		5265559,5265250,5264180,5263768	5265705,5265400,5264374,5263918	Cytosolic 60S large ribosomal subunit protein L23a
chr6	5265828	5267835	5266098	5267682	-	Cre06.g282550.t1.2	Cre06.g282550.t1.2		5267595,5267371,5266837,5265828	5267835,5267495,5266976,5266421	
chr6	5268044	5273265	5268295	5272846	-	HEL27	Cre06.g282600.t1.1		5273055,5272826,5272352,5271538,5270664,5269845,5269427,5268988,5268044	5273265,5272941,5272472,5272002,5271068,5270252,5269588,5269175,5268737	
chr6	5273320	5276685	5274280	5276514	-	TRX16	Cre06.g282651.t1.1		5276068,5275511,5275022,5273320	5276685,5275649,5275081,5274373	
chr6	5276740	5280125	5277376	5280032	-	Cre06.g282700.t1.2	Cre06.g282700.t1.2		5279540,5276740	5280125,5279383	
chr6	5280180	5284205	5280969	5283413	-	Cre06.g282750.t1.1	Cre06.g282750.t1.1		5282969,5280180	5284205,5282787	
chr6	5284370	5288359	5284454	5287757	+	ICL1	Cre06.g282800.t1.2		5284370,5284791,5285086,5285359,5285742,5286089,5286618,5286974,5287569	5284638,5284882,5285160,5285466,5285789,5286293,5286753,5287191,5288359	isocitrate lyase (EC 4.1.3.1); isocitrase; 98% identical to cDNA (AAB61446) [PMID: 9049260]
chr6	5288370	5290135	5288550	5289459	-	Cre06.g282826.t1.1	Cre06.g282826.t1.1		5288745,5288370	5290135,5288550	
chr6	5290837	5295124	5291061	5294641	+	Cre06.g282850.t1.1	Cre06.g282850.t1.1		5290837,5291246,5291432,5291940,5292408,5293390,5294498	5291094,5291323,5291780,5292267,5293220,5294384,5295124	
chr6	5295184	5299195	5296121	5299107	-	Cre06.g282900.t1.2	Cre06.g282900.t1.2		5299041,5298872,5298643,5298480,5298256,5298019,5297800,5297524,5297268,5297003,5296808,5296524,5295184	5299195,5298946,5298738,5298533,5298303,5298066,5297847,5297604,5297291,5297041,5296851,5296655,5296374	
chr6	5299290	5302128	5299437	5301988	+	Cre06.g282950.t1.2	Cre06.g282950.t1.2		5299290,5299667,5299962,5300281,5300702,5301009,5301428,5301769	5299458,5299792,5300033,5300507,5300838,5301079,5301562,5302128	
chr6	5302176	5308990	5302273	5308796	+	CGLD39	Cre06.g283000.t1.1		5302176,5302510,5302796,5303115,5303432,5303802,5304115,5304525,5305026,5305487,5305936,5306444,5306883	5302394,5302625,5302861,5303173,5303600,5303906,5304201,5304640,5305215,5305581,5306227,5306627,5308990	
chr6	5309046	5311407	5309111	5310918	+	Cre06.g283034.t1.1	Cre06.g283034.t1.1		5309046,5309609,5310104,5310696	5309321,5309893,5310319,5311407	
chr6	5311786	5314703	5312105	5313770	+	LHCA1	Cre06.g283050.t1.2		5311786,5312351,5312585,5312783,5313082,5313384,5313696	5312269,5312430,5312648,5312873,5313167,5313511,5314703	null-allele mutant was isolated (PMID 29743196)
chr6	5314876	5317624	5315050	5317018	+	FAP85	Cre06.g283100.t1.2		5314876,5315507,5315867,5316155,5316476,5316928	5315053,5315636,5315946,5316256,5316664,5317624	EF-Hand Containing Flagellar Associated Protein 85; Microtubule inner protein
chr6	5317626	5320135	5318286	5319447	-	Cre06.g283150.t1.2	Cre06.g283150.t1.2		5318808,5317626	5320135,5318466	
chr6	5322236	5327627	5322537	5325936	+	Cre06.g283200.t1.2	Cre06.g283200.t1.2		5322236,5322815,5323114,5323379,5323746,5324011,5324316,5324584,5325055,5325402,5325712	5322624,5322913,5323200,5323438,5323817,5324082,5324373,5324641,5325144,5325502,5327627	
chr6	5327629	5330755	5328512	5330599	-	Cre06.g283250.t1.2	Cre06.g283250.t1.2		5330551,5330242,5329962,5329687,5328884,5327629	5330755,5330344,5330067,5329771,5329035,5328672	
chr6	5330896	5332447	5331000	5331971	+	Cre06.g283300.t1.2	Cre06.g283300.t1.2		5330896,5331835	5331452,5332447	
chr6	5332496	5334227	5332525	5333387	+	MRPS34	Cre06.g283350.t1.1		5332496,5332900,5333190	5332681,5332945,5334227	
chr6	5334229	5342395	5335799	5342263	-	CGL101	Cre06.g283400.t1.2		5341947,5341742,5341273,5340858,5339958,5339597,5339169,5338420,5337968,5337609,5337129,5336800,5336293,5334229	5342395,5341839,5341338,5340962,5340020,5339695,5339273,5338515,5338138,5337738,5337220,5336907,5336463,5336114	Conserved in the Green Lineage
chr6	5343150	5346415	5343751	5346050	-	Cre06.g283450.t1.2	Cre06.g283450.t1.2		5344730,5344361,5343150	5346415,5344569,5344196	
chr6	5346666	5358745	5346984	5358241	-	Cre06.g283500.t1.1	Cre06.g283500.t1.1		5358620,5355311,5355140,5354838,5354084,5353468,5352483,5352221,5351012,5349848,5349476,5349144,5348785,5348427,5348015,5346666	5358745,5358259,5355197,5355017,5354635,5353947,5353352,5352346,5352088,5350858,5349709,5349335,5348997,5348603,5348227,5347878	
chr6	5358846	5361050	5359041	5360564	+	Cre06.g283550.t1.1	Cre06.g283550.t1.1		5358846,5359620,5359916,5360489	5359206,5359718,5360083,5361050	
chr6	5361060	5363965	5361125	5363825	-	Cre06.g283600.t1.2	Cre06.g283600.t1.2		5363633,5363282,5362972,5362707,5362483,5362104,5361762,5361457,5361060	5363965,5363347,5363040,5362786,5362600,5362204,5361861,5361505,5361244	
chr6	5364076	5373086	5364183	5372798	+	Cre06.g283634.t1.1	Cre06.g283634.t1.1		5364076,5364422,5364591,5364771,5365591,5366579,5367819,5368525,5368950,5369412,5369992,5370508,5371269,5371768,5372271,5372658	5364285,5364475,5364651,5365309,5366391,5367649,5368343,5368754,5369289,5369799,5370337,5371012,5371598,5372156,5372419,5373086	
chr6	5364076	5373227	5364183	5372798	+	Cre06.g283634.t2.1	Cre06.g283634.t2.1		5364076,5364422,5364591,5364771,5365591,5366579,5367819,5368525,5368950,5369412,5369992,5370508,5371269,5371768,5372271,5372658	5364285,5364475,5364651,5365309,5366391,5367649,5368343,5368754,5369289,5369799,5370337,5371012,5371598,5372156,5372419,5373227	
chr6	5373426	5379607	5373564	5378868	+	Cre06.g283700.t1.2	Cre06.g283700.t1.2		5373426,5374009,5374396,5374842,5376798,5377287	5373892,5374100,5374655,5376397,5377051,5379607	
chr6	5379676	5383252	5379780	5382313	+	HST1	Cre06.g283750.t1.2		5379676,5379967,5380257,5380635,5381417,5382080	5379891,5380154,5380420,5380914,5381553,5383252	putative homogentisate solanesyltransferase (homogentisate nonaprenyltransferase) (homogentisate polyprenyltransferase) (plastoquinone polyprenyltransferase)
chr6	5385206	5391139	5385379	5390697	+	Cre06.g283800.t1.2	Cre06.g283800.t1.2		5385206,5386664,5387143,5387627,5388020,5388595,5388859,5389147,5389659	5386209,5386878,5387273,5387763,5388254,5388678,5388936,5389314,5391139	
chr6	5391636	5392767	5392105	5392292	+	Cre06.g283826.t1.1	Cre06.g283826.t1.1		5391636	5392767	
chr6	5392816	5397500	5393032	5397137	+	Cre06.g283850.t1.2	Cre06.g283850.t1.2		5392816,5393876,5394098,5394600,5394904,5395417,5395693,5396066,5396515	5393238,5393950,5394386,5394721,5395213,5395494,5395854,5396367,5397500	null-allele mutant was isolated (PMID 29743196)
chr6	5398256	5404557	5398727	5402308	+	Cre06.g283900.t1.2	Cre06.g283900.t1.2		5398256,5399372,5399811,5400338,5400885,5401299,5401646,5402057	5398830,5399447,5400076,5400390,5400953,5401464,5401753,5404557	
chr6	5405936	5407630	5405964	5407304	+	LHCBM4	Cre06.g283950.t1.2		5405936,5406178,5406450,5406998	5406042,5406238,5406769,5407630	PSII-associated chlorophyll a/b-binding protein
chr6	5407640	5408295	5407980	5408194	-	Cre06.g283975.t1.1	Cre06.g283975.t1.1		5407640	5408295	
chr6	5408342	5412015	5408982	5411886	-	Cre06.g284000.t1.2	Cre06.g284000.t1.2		5411832,5411691,5411406,5411082,5410528,5410147,5408342	5412015,5411737,5411622,5411219,5410662,5410358,5409988	
chr6	5412116	5418047	5412476	5416277	+	TAF1	Cre06.g284050.t1.2		5412116,5412615,5413677,5414059,5414637,5416064	5412500,5412698,5413757,5414166,5414747,5418047	contains a YEATS domain, similar to rice putative TAF14b
chr6	5418050	5422395	5418101	5421629	-	RHP1	Cre06.g284100.t1.2		5421501,5421296,5421017,5420730,5420483,5420189,5419872,5419658,5419142,5418795,5418540,5418050	5422395,5421330,5421091,5420878,5420558,5420265,5420002,5419752,5419492,5419027,5418660,5418355	RH50-like protein; elevated expression in cells grown in high CO2 (5%) [PMID: 12032358; PMID: 11358367]; necessary for adaptation to high CO2; located in plasma membrane
chr6	5422449	5428603	5423807	5428183	-	RHP2	Cre06.g284150.t1.1		5428127,5427956,5427756,5427216,5426981,5426692,5426127,5425874,5425610,5425119,5424772,5424361,5422449	5428603,5428030,5427856,5427439,5427056,5426768,5426257,5425968,5425677,5425401,5425004,5424508,5424232	highly similar to downstream RH1; similar to Rh50 gene product of Drosophila melanogaster; based on EST data, the main isoform, not described by annotation, has first exon moved upstream but codes for a shorter protein starting with MSSVLKIPT....
chr6	5428650	5433565	5430157	5431906	-	LHCBM9	Cre06.g284200.t1.2		5433512,5431828,5431639,5430990,5430658,5428650	5433565,5431960,5431699,5431309,5430720,5430400	
chr6	5433613	5437765	5434116	5437466	-	LHCBM8	Cre06.g284250.t1.2		5437388,5437221,5436562,5435610,5434466,5433613	5437765,5437281,5436881,5436330,5435231,5434116	
chr6	5438110	5443625	5438657	5443515	-	Cre06.g284300.t1.1	Cre06.g284300.t1.1		5443470,5442730,5442603,5442411,5442192,5441623,5440920,5440396,5439973,5439483,5438110	5443625,5442843,5442650,5442464,5442269,5441787,5441270,5440596,5440137,5439575,5438972	
chr6	5443900	5448975	5446898	5448882	-	CYCD3	Cre06.g284350.t1.1		5448657,5448372,5448130,5447962,5447740,5447388,5443900	5448975,5448574,5448307,5448033,5447799,5447570,5447132	D-type cyclin homolog. Contains N terminal LXCXE motif that binds retinoblastoma proteins; null-allele mutant was isolated (PMID 29743196)
chr6	5451358	5453075	5452639	5452989	-	Cre06.g284376.t1.1	Cre06.g284376.t1.1		5452854,5451358	5453075,5452705	
chr6	5454736	5457417	5454929	5456768	+	Cre06.g284400.t1.2	Cre06.g284400.t1.2		5454736,5455164,5455370,5455578,5455864,5456239,5456629	5455097,5455226,5455454,5455648,5455926,5456318,5457417	
chr6	5457467	5461350	5459501	5461272	-	Cre06.g284450.t1.2	Cre06.g284450.t1.2		5460788,5460289,5459906,5457467	5461350,5460564,5459988,5459603	related to NLI interacting factor
chr6	5461478	5465172	5461778	5464503	+	RPH1	Cre06.g284500.t1.2		5461478,5462283,5462751,5463374,5463921,5464386	5461910,5462388,5462878,5463526,5464022,5465172	Homologue of S. cerevisiae Ski6/Rrp41, which is a core component of the exosome, a complex of multiple 3'-5' exoribonucleases involved in RNA processing and RNA degradation. Homologue of RNase PH; null-allele mutant was isolated (PMID 29743196)
chr6	5465226	5472875	5465408	5472317	+	Cre06.g284550.t1.2	Cre06.g284550.t1.2		5465226,5466725,5466968,5467738,5468065,5468519,5468877,5469374,5470045,5470701,5471964	5466241,5466788,5467055,5467835,5468190,5468577,5468973,5469444,5470533,5471704,5472875	
chr6	5473585	5475623	5473614	5474944	+	RBD2	Cre06.g284600.t1.2		5473585,5474037,5474468,5474853	5473668,5474160,5474552,5475623	
chr6	5476657	5480550	5476781	5479828	+	MKP6	Cre06.g284650.t1.2		5476657,5477025,5478037,5478577,5478883,5479228,5479695	5476935,5477200,5478134,5478643,5478988,5479333,5480550	MAP kinase phosphatase 6 (Dual Specificity Protein Phosphatase 6) (DSP6); Dephosphorylates phosphotyrosine, phosphoserine, and phosphothreonine residues
chr6	5480606	5487817	5481004	5486481	+	AAT2	Cre06.g284700.t1.2		5480606,5481004,5482330,5482684,5483144,5483885,5484417,5484879,5485426,5485820,5486221	5480897,5481319,5482430,5482834,5483351,5483973,5484525,5485033,5485506,5485934,5487817	
chr6	5488226	5489462	5488251	5488811	+	Cre06.g284726.t1.1	Cre06.g284726.t1.1		5488226,5488602	5488336,5489462	
chr6	5489516	5495845	5490194	5495497	-	EFG3	Cre06.g284750.t1.2		5495250,5495004,5494281,5493655,5493342,5492801,5492261,5491756,5491432,5491128,5490730,5489516	5495845,5495178,5494359,5493692,5493432,5492938,5492390,5491940,5491586,5491305,5490819,5490413	Similar to GSPT1: Eukaryotic peptide chain release factor GTP-binding subunit ERF3A (Homo sapiens). Similarity to yeast Hbs1p which plays a role in nonsense-mediated decay
chr6	5496130	5500405	5496901	5500146	-	Cre06.g284800.t1.2	Cre06.g284800.t1.2		5500070,5499688,5499209,5498860,5498116,5497582,5496130	5500405,5499923,5499439,5498973,5498559,5497698,5497309	
chr6	5500460	5517065	5500842	5516664	-	Cre06.g284850.t1.1	Cre06.g284850.t1.1		5516493,5516056,5515514,5515126,5514805,5514341,5513207,5512660,5512238,5511746,5511249,5510865,5510380,5510041,5509563,5508755,5508231,5507555,5507103,5506499,5506293,5505917,5505685,5505285,5504901,5504531,5503934,5503448,5502878,5501491,5500460	5517065,5516146,5515608,5515183,5514908,5514520,5513842,5512845,5512360,5511958,5511311,5511112,5510656,5510097,5509754,5509135,5508326,5507879,5507387,5506914,5506364,5505977,5505723,5505436,5505041,5504650,5504155,5503648,5503095,5502671,5501330	
chr6	5500460	5517065	5500842	5516664	-	Cre06.g284850.t2.1	Cre06.g284850.t2.1		5516493,5516056,5515514,5515126,5514805,5514341,5513207,5512660,5512238,5511746,5511249,5510865,5510380,5510041,5509563,5508755,5508231,5507555,5507103,5506499,5506293,5505917,5505685,5505285,5504901,5504531,5503934,5503448,5502878,5501491,5500460	5517065,5516146,5515608,5515183,5514908,5514520,5513842,5512845,5512360,5511958,5511311,5511112,5510656,5510097,5509754,5509135,5508326,5507879,5507384,5506914,5506364,5505977,5505723,5505436,5505041,5504650,5504155,5503648,5503095,5502671,5501330	
chr6	5517115	5519585	5517389	5519190	-	CYN20-1	Cre06.g284900.t1.2		5519160,5518764,5518483,5518065,5517739,5517115	5519585,5518895,5518519,5518285,5517880,5517496	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; secretory pathway; similar toROC7 (AtCYP20-1) and Cyp5 (AtCYP19-4)
chr6	5517115	5519585	5517389	5518902	-	CYN20-1	Cre06.g284900.t2.1		5519160,5518764,5518483,5518065,5517739,5517115	5519585,5518933,5518519,5518285,5517880,5517496	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; secretory pathway; similar toROC7 (AtCYP20-1) and Cyp5 (AtCYP19-4)
chr6	5519647	5522235	5520141	5521635	-	Cre06.g284950.t1.1	Cre06.g284950.t1.1		5522085,5521844,5520417,5519647	5522235,5521907,5521636,5520267	
chr6	5522976	5530615	5523340	5529768	+	Cre06.g285001.t1.1	Cre06.g285001.t1.1		5522976,5523295,5523428,5523755,5524309,5525657,5525907,5526453,5528311,5529006,5529338,5529694	5523182,5523344,5523504,5523883,5525355,5525689,5526015,5526553,5528505,5529101,5529431,5530615	
chr6	5530666	5535284	5531107	5534274	+	Cre06.g285050.t1.1	Cre06.g285050.t1.1		5530666,5532023,5532662,5533830	5531767,5532439,5533573,5535284	
chr6	5535496	5540717	5535730	5540041	+	Cre06.g285100.t1.1	Cre06.g285100.t1.1		5535496,5537087,5538295,5539051	5536759,5538031,5538606,5540717	
chr6	5540720	5544095	5541178	5544061	-	APX2	Cre06.g285150.t1.2		5543937,5543491,5542860,5542415,5542110,5541580,5540720	5544095,5543714,5543006,5542667,5542207,5541657,5541268	L-ascorbate peroxidase
chr6	5544216	5547837	5544336	5546939	+	NDH1	Cre06.g285200.t1.1		5544216,5544848,5545408,5545905,5546222,5546448,5546814	5544611,5544928,5545528,5545966,5546273,5546565,5547837	probably an ADP-ribose diphosphatase
chr6	5548156	5550742	5548922	5550331	+	LHCBM6	Cre06.g285250.t1.2		5548156,5549155,5549459,5550025	5548997,5549215,5549778,5550742	Note that in P14273 and AAM18056, L101 is changed to Q, L149 to S and M209 to S
chr6	5551826	5557157	5551948	5556802	+	SUT1	Cre06.g285300.t1.1		5551826,5552676,5553413,5553919,5555044,5555381,5555773,5556110,5556385	5552506,5553111,5553594,5554826,5555156,5555502,5555892,5556238,5557157	major facilitator superfamily
chr6	5557180	5562815	5558963	5562410	-	Cre06.g285350.t1.1	Cre06.g285350.t1.1		5562644,5562318,5562117,5561896,5561697,5561525,5557180	5562815,5562459,5562205,5561956,5561757,5561583,5561370	
chr6	5557180	5562815	5558963	5562410	-	Cre06.g285350.t2.1	Cre06.g285350.t2.1		5562644,5562318,5562117,5561896,5561697,5561525,5557180	5562815,5562459,5562130,5561956,5561757,5561583,5561370	
chr6	5564664	5567215	5565152	5566759	-	FAP355	Cre06.g285401.t1.1		5566522,5565946,5565643,5564664	5567215,5565964,5565725,5565350	Similar to bacterial DNA-binding protein HU; Karcher et al. (29) [PMID: 19995727] showed this protein is associated with chloroplast nucleoids, and that RNAi knockdown of the gene expression reduced the level of compaction of chloroplast nucleoids
chr6	5568430	5575495	5569543	5575327	-	Cre06.g285451.t1.1	Cre06.g285451.t1.1		5575168,5574837,5574510,5574181,5573825,5573351,5572809,5571126,5568430	5575495,5574966,5574604,5574284,5574013,5573566,5573130,5572541,5571025	
chr6	5575666	5578679	5575788	5577645	+	Cre06.g285500.t1.1	Cre06.g285500.t1.1		5575666,5575916,5576121,5576312,5576707,5577147,5577534	5575832,5575969,5576153,5576441,5576823,5577200,5578679	
chr6	5579026	5585292	5579822	5583799	+	Cre06.g285550.t1.1	Cre06.g285550.t1.1		5579026,5580055,5581004,5581688,5582215,5582548,5583297,5583703	5579946,5580867,5581507,5582040,5582365,5583048,5583442,5585292	
chr6	5586996	5594217	5587499	5592736	+	RWP5	Cre06.g285600.t1.2		5586996,5587459,5587709,5588382,5590567,5592151	5587272,5587557,5587788,5590385,5591835,5594217	putative RWP-RK domain transcription factor [PMID: 15785851]
chr6	5586996	5594217	5587499	5592736	+	RWP5	Cre06.g285600.t2.1		5586996,5587459,5587709,5588382,5590567,5592151	5587313,5587557,5587788,5590385,5591835,5594217	putative RWP-RK domain transcription factor [PMID: 15785851]
chr6	5594220	5597179	5594869	5597101	-	ORC6	Cre06.g285650.t1.2		5596987,5596857,5596633,5596337,5595901,5595504,5594220	5597179,5596903,5596782,5596481,5596079,5595630,5595238	Homologous to eukaryotic ORC6, DNA replication control protein
chr6	5597230	5609105	5597335	5609024	-	Cre06.g285700.t1.2	Cre06.g285700.t1.2		5608983,5608763,5608204,5607948,5607568,5607218,5606140,5605639,5603115,5602773,5602216,5601975,5601436,5600288,5600054,5599478,5598805,5597230	5609105,5608895,5608426,5608021,5607699,5607315,5606234,5605754,5605412,5602937,5602579,5602081,5601544,5601135,5600121,5599595,5599226,5598635	
chr6	5609152	5612265	5609594	5612241	-	Cre06.g285750.t1.1	Cre06.g285750.t1.1		5612073,5611564,5611112,5610742,5610136,5609893,5609152	5612265,5611899,5611282,5610846,5610522,5609968,5609668	
chr6	5612320	5615595	5612977	5615562	-	Cre06.g285800.t1.2	Cre06.g285800.t1.2		5615466,5614902,5614595,5614068,5613489,5613204,5612320	5615595,5615189,5614765,5614172,5613893,5613279,5613051	
chr6	5615650	5618715	5616067	5618632	-	Cre06.g285850.t1.2	Cre06.g285850.t1.2		5618355,5618109,5617818,5617344,5616874,5615650	5618715,5618164,5617909,5617576,5617089,5616717	
chr6	5615650	5618715	5616067	5618632	-	Cre06.g285850.t2.1	Cre06.g285850.t2.1		5618355,5618109,5617818,5617344,5616874,5615650	5618715,5618161,5617909,5617576,5617089,5616717	
chr6	5618949	5632725	5619741	5632197	-	FAP396	Cre06.g285900.t1.1		5632339,5631621,5631276,5629610,5629368,5628712,5628366,5627809,5627577,5626426,5625965,5625397,5625094,5624384,5623457,5622957,5622489,5622186,5621020,5620709,5620334,5620063,5618949	5632725,5632228,5631413,5631109,5629466,5629202,5628528,5628039,5627658,5626558,5626115,5625591,5625204,5624491,5624092,5623079,5622712,5622309,5621904,5620792,5620424,5620193,5619951	Found in Chlamydomonas and Volvox but not strongly conserved elsewhere
chr6	5632826	5633487	5632968	5633224	+	Cre06.g285926.t1.1	Cre06.g285926.t1.1		5632826	5633487	
chr6	5633578	5636241	5634284	5636161	-	Cre06.g285950.t1.2	Cre06.g285950.t1.2		5636070,5635817,5633578	5636241,5635870,5635489	
chr6	5636290	5640295	5636906	5640165	-	Cre06.g286000.t1.2	Cre06.g286000.t1.2		5640096,5639532,5638904,5637633,5636290	5640295,5639915,5639274,5638487,5637144	
chr6	5640416	5643982	5640530	5643614	+	MCP20	Cre06.g286050.t1.2		5640416,5640838,5641299,5641986,5642214,5642877,5643471	5640689,5640933,5641385,5642061,5642621,5643185,5643982	
chr6	5644020	5649675	5645815	5649169	-	Cre06.g286100.t1.1	Cre06.g286100.t1.1		5649116,5648867,5648468,5644020	5649675,5648986,5648637,5648313	
chr6	5650236	5652007	5650363	5650977	+	Cre06.g286150.t1.2	Cre06.g286150.t1.2		5650236,5650629	5650456,5652007	
chr6	5650236	5652007	5650437	5650977	+	Cre06.g286150.t2.1	Cre06.g286150.t2.1		5650236,5650629	5650437,5652007	
chr6	5655160	5659565	5656112	5659253	-	Cre06.g286200.t1.2	Cre06.g286200.t1.2		5659182,5658245,5657938,5657386,5656865,5655160	5659565,5658650,5658042,5657724,5657038,5656613	
chr6	5660346	5663968	5660551	5663399	+	MPC1	Cre06.g286250.t1.2		5660346,5660809,5661132,5661343,5662017,5662402,5662787,5663175	5660582,5660949,5661169,5661409,5662099,5662545,5662985,5663968	Putative mitochondrial substrate carrier protein. Based on homology to: 1)gi 34394981 dbj BAC84529.1 [34394981] a mitochondrial aspartate-glutamate carrier protein-like from Oryza sativa 2)gi 15028275 gb AAK76726.1 [15028275] a putative mitochondrial carrier protein from Arabidopsis thaliana.
chr6	5663970	5668429	5664506	5668293	-	COQ5B	Cre06.g286300.t1.2		5668202,5667675,5667440,5667030,5666687,5666252,5665877,5665528,5665212,5664912,5663970	5668429,5667929,5667473,5667177,5666837,5666381,5666026,5665747,5665406,5665096,5664651	
chr6	5668593	5675120	5671072	5674922	-	UMM6	Cre06.g286350.t1.2		5674810,5674342,5674012,5673506,5672943,5672591,5672195,5671854,5671528,5668593	5675120,5674651,5674132,5673715,5673037,5672740,5672372,5672048,5671712,5671223	UbiE/COQ5 methyltransferase family
chr6	5675216	5676910	5675255	5675709	+	Cre06.g286400.t1.2	Cre06.g286400.t1.2		5675216	5676910	
chr6	5676963	5683045	5677902	5682502	-	Cre06.g286450.t1.2	Cre06.g286450.t1.2		5682850,5682432,5682085,5681737,5681359,5680614,5680397,5680161,5679377,5678794,5678406,5676963	5683045,5682518,5682206,5681823,5681413,5680652,5680426,5680221,5679522,5678920,5678529,5678034	
chr6	5683156	5687567	5683515	5686530	+	Cre06.g286500.t1.2	Cre06.g286500.t1.2		5683156,5683982,5686005	5683573,5685885,5687567	
chr6	5687570	5691614	5688208	5691501	-	Cre06.g286550.t1.2	Cre06.g286550.t1.2		5691461,5690987,5690614,5690105,5689841,5689431,5689057,5688793,5688484,5687570	5691614,5691175,5690744,5690272,5689918,5689497,5689169,5688878,5688500,5688270	
chr6	5691746	5697427	5691835	5697299	+	Cre06.g286600.t1.1	Cre06.g286600.t1.1		5691746,5692128,5692462,5692831,5693070,5693318,5693731,5694171,5694443,5694773,5695011,5695396,5695865,5696242,5696601,5697116	5691949,5692310,5692556,5692871,5693148,5693526,5693942,5694257,5694559,5694853,5695142,5695500,5695946,5696356,5696769,5697427	
chr6	5697430	5706995	5697712	5706845	-	DMC4	Cre06.g286650.t1.1		5706689,5705206,5704558,5704048,5703684,5703179,5702801,5701898,5701364,5700832,5700521,5700188,5699617,5699126,5698827,5698563,5698176,5697430	5706995,5706540,5704893,5704302,5703842,5703577,5702917,5702464,5701480,5701092,5700555,5700290,5700005,5699359,5698926,5698633,5698299,5697952	Putative DNMT1-type cytosine-C5 specific DNA methylase; protein contains a methylase domain but appears to lack bromo adjacent homology (BAH) domains.  ChromoDB DMT342
chr6	5707050	5710895	5708087	5710682	-	Cre06.g286700.t1.2	Cre06.g286700.t1.2		5710481,5710099,5709853,5709549,5709110,5708710,5708382,5707050	5710895,5710263,5709879,5709614,5709299,5708870,5708508,5708200	
chr6	5710987	5714731	5711253	5714033	+	Cre06.g286750.t1.2	Cre06.g286750.t1.2		5710987,5711600,5712364,5712628,5713139	5711266,5711966,5712439,5712987,5714731	
chr6	5714786	5717584	5715147	5717394	+	HBP1	Cre06.g286800.t1.2		5714786,5715448,5715914,5716094,5716299,5716738,5716968	5715208,5715622,5715989,5716171,5716394,5716824,5717584	Homologous to histone stem-loop/hairpin binding proteins involved in regulating replication-linked histone gene mRNA stability.
chr6	5717605	5719973	5718033	5719946	-	Cre06.g286850.t1.1	Cre06.g286850.t1.1		5719855,5719717,5718713,5717605	5719973,5719796,5718948,5718397	
chr6	5720306	5725447	5720790	5724854	+	Cre06.g286900.t1.1	Cre06.g286900.t1.1		5720306,5720753,5721196	5720620,5721023,5725447	null-allele mutant was isolated (PMID 29743196)
chr6	5725462	5728025	5726704	5727581	-	Cre06.g286950.t1.2	Cre06.g286950.t1.2		5727386,5725462	5728025,5727199	
chr6	5728396	5733330	5728703	5732814	+	Cre06.g287000.t1.2	Cre06.g287000.t1.2		5728396,5728934,5729273,5729610,5729968,5730323,5730650,5730885,5731417,5731692,5732151,5732409,5732682	5728783,5729177,5729437,5729700,5730073,5730363,5730689,5730930,5731536,5731757,5732185,5732445,5733330	
chr6	5733691	5738432	5733789	5737917	+	Cre06.g287050.t1.2	Cre06.g287050.t1.2		5733691,5734201,5734375,5735136,5735663,5736192	5733997,5734227,5734892,5735405,5735878,5738432	
chr6	5738435	5740830	5738810	5740469	-	CAM11	Cre06.g287100.t1.1		5740670,5740430,5740187,5739800,5739398,5739169,5738435	5740830,5740561,5740219,5739883,5739520,5739216,5738885	
chr6	5741111	5747609	5741269	5747010	+	Cre06.g287150.t1.1	Cre06.g287150.t1.1		5741111,5741635,5741903,5742258,5742595,5742793,5742993,5743326,5743940,5744251,5744680,5745725,5746041,5746226,5746730	5741334,5741778,5741993,5742389,5742663,5742840,5743144,5743710,5744050,5744447,5745523,5745841,5746084,5746603,5747609	
chr6	5747861	5754742	5748330	5754121	+	CPLD67	Cre06.g287176.t1.2		5747861,5750474,5750862,5751166,5751461,5751799,5752267,5752740,5752965,5753308,5753560,5753885	5750343,5750599,5750951,5751249,5751601,5752139,5752555,5752832,5753147,5753349,5753692,5754742	Conserved in the Plant Lineage and Diatoms
chr6	5754857	5756481	5755431	5756353	-	Cre06.g287200.t2.1	Cre06.g287200.t2.1		5756293,5755901,5754857	5756481,5756088,5755525	
chr6	5754515	5756481	5755431	5756353	-	Cre06.g287200.t1.2	Cre06.g287200.t1.2		5756293,5755901,5754515	5756481,5756088,5755525	
chr6	5756591	5764649	5756664	5764010	+	COG4	Cre06.g287250.t1.2		5756591,5756981,5757397,5757781,5758151,5758427,5758805,5759104,5759737,5760404,5760905,5761255,5761669,5762100,5763054,5763644	5756847,5757181,5757570,5757906,5758204,5758564,5758892,5759266,5759967,5760512,5760961,5761356,5761907,5762229,5763215,5764649	Expressed protein. Similar to COG4/COD1 component of oligomeric golgi complex 4, involved in vesicle tethering and other Golgi functions; null-allele mutant was isolated (PMID 29743196)
chr6	5764701	5768982	5765170	5767004	+	Cre06.g287300.t1.2	Cre06.g287300.t1.2		5764701,5765675,5766213	5765515,5766017,5768982	
chr6	5769031	5770152	5769147	5769364	+	Cre06.g287350.t1.1	Cre06.g287350.t1.1		5769031	5770152	
chr6	5770202	5778370	5772690	5778035	-	Cre06.g287400.t1.1	Cre06.g287400.t1.1		5777957,5777623,5777250,5777028,5776682,5776507,5770202	5778370,5777751,5777396,5777126,5776833,5776561,5776326	Serine/Threonine Protein Kinase Homolog 23, hypothetical
chr6	5778581	5786919	5779124	5784449	+	Cre06.g287450.t1.1	Cre06.g287450.t1.1		5778581,5779402,5779783,5780053,5780336,5780611,5780846	5779130,5779557,5779929,5780151,5780487,5780665,5786919	
chr6	5787094	5791650	5787340	5791459	-	Cre06.g287500.t1.1	Cre06.g287500.t1.1		5789956,5789638,5789125,5788698,5788411,5787094	5791650,5789705,5789299,5788852,5788486,5788171	
chr6	5791781	5801592	5791853	5801074	+	Cre06.g287550.t1.1	Cre06.g287550.t1.1		5791781,5792339,5794337,5795059,5795511,5795944,5796240,5796824,5798216,5798630,5799091,5799661,5799985	5792114,5793988,5794712,5795207,5795672,5796042,5796584,5797997,5798424,5798875,5799342,5799801,5801592	
chr6	5801610	5810620	5803864	5810054	-	Cre06.g287600.t1.1	Cre06.g287600.t1.1		5810454,5809497,5809038,5808679,5808405,5808030,5805617,5805319,5801610	5810620,5810098,5809212,5808819,5808548,5808194,5807863,5805419,5805161	
chr6	5811956	5818400	5812900	5818121	-	Cre06.g287650.t1.2	Cre06.g287650.t1.2		5818037,5817886,5817637,5817285,5816953,5816596,5816208,5815453,5814919,5811956	5818400,5817961,5817775,5817441,5817082,5816753,5816400,5816057,5815182,5814769	
chr6	5821601	5830475	5821812	5828392	+	Cre06.g287700.t1.1	Cre06.g287700.t1.1		5821601,5822296,5822625,5822948,5824783,5825144,5825627,5825890,5826046,5826295,5827609	5822121,5822493,5822737,5824475,5824939,5825340,5825741,5825929,5826124,5827377,5830475	Serine/Threonine Protein Kinase Homolog 18
chr6	5831416	5835270	5831878	5834978	-	PYR8	Cre06.g287750.t1.2		5834915,5834567,5833964,5833634,5833179,5832803,5832494,5832099,5831416	5835270,5834743,5834270,5833722,5833452,5832945,5832550,5832146,5831989	
chr6	5837068	5840880	5837269	5839928	+	Cre06.g287800.t1.2	Cre06.g287800.t1.2		5837068,5837467,5837726,5837963,5838211,5838534,5838992,5839529	5837374,5837580,5837821,5838003,5838311,5838726,5839133,5840880	
chr6	5840971	5846102	5841566	5844117	+	Cre06.g287850.t1.2	Cre06.g287850.t1.2		5840971,5841558	5841227,5846102	
chr6	5840971	5846102	5841566	5844117	+	Cre06.g287850.t2.1	Cre06.g287850.t2.1		5840971,5841558	5841341,5846102	
chr6	5846105	5848590	5846700	5848542	-	Cre06.g287900.t1.1	Cre06.g287900.t1.1		5848399,5847925,5847537,5846105	5848590,5848058,5847657,5847385	
chr6	5848691	5868760	5848870	5867895	+	Cre06.g287950.t1.1	Cre06.g287950.t1.1		5848691,5850298,5850614,5850916,5851508,5852278,5852588,5853051,5853404,5854783,5855165,5855418,5855830,5856436,5856739,5857097,5857584,5857932,5858259,5858604,5858966,5859336,5859944,5860492,5861123,5861540,5861901,5862341,5862829,5863087,5863382,5863791,5864081,5864425,5864788,5865126,5865545,5865912	5850164,5850355,5850700,5851225,5852078,5852414,5852799,5853237,5854470,5854867,5855295,5855671,5856155,5856562,5856904,5857360,5857760,5858035,5858347,5858744,5859067,5859492,5860110,5860947,5861209,5861699,5862016,5862562,5862889,5863229,5863599,5863860,5864206,5864529,5864913,5865377,5865616,5868760	SNF2-related helicase; null-allele mutant was isolated (PMID 29743196)
chr6	5869391	5874302	5869885	5873091	+	Cre06.g288000.t1.1	Cre06.g288000.t1.1		5869391,5871557,5872087,5872547,5872869	5871463,5871836,5872352,5872603,5874302	
chr6	5875405	5879338	5876178	5879022	-	MGTE	Cre06.g288050.t1.2		5878882,5878389,5877892,5877524,5877151,5876945,5876644,5875405	5879338,5878517,5877960,5877603,5877242,5877006,5876745,5876389	related to cyanobacterial Mg/Co/Ni transporter MgtE
chr6	5875628	5879338	5876178	5879022	-	MGTE	Cre06.g288050.t2.1		5878882,5878389,5877892,5877524,5877151,5876945,5876644,5875628	5879338,5878517,5877960,5877603,5877242,5877006,5876745,5876389	related to cyanobacterial Mg/Co/Ni transporter MgtE
chr6	5879501	5883172	5879632	5882463	+	Cre06.g288100.t1.2	Cre06.g288100.t1.2		5879501,5880850,5881081,5881474,5881827	5880462,5880937,5881228,5881577,5883172	
chr6	5883242	5887670	5884620	5887341	-	Cre06.g288150.t1.2	Cre06.g288150.t1.2		5887146,5886828,5886376,5885648,5883242	5887670,5886950,5886531,5885994,5885371	
chr6	5888376	5901670	5889230	5901354	-	Cre06.g288252.t1.1	Cre06.g288252.t1.1		5900307,5899842,5899508,5899236,5898952,5898629,5898353,5897884,5897502,5897241,5893340,5893101,5892666,5892238,5888376	5901670,5900082,5899701,5899270,5899079,5898748,5898435,5898144,5897552,5897260,5894444,5893196,5892842,5892453,5891963	null-allele mutant was isolated (PMID 29743196)
chr6	5901725	5910650	5902631	5910548	-	Cre06.g288350.t1.1	Cre06.g288350.t1.1		5910509,5910355,5909849,5909306,5908695,5908063,5906609,5906254,5905758,5905218,5904748,5904380,5903777,5903457,5903131,5901725	5910650,5910423,5910036,5909378,5908828,5908222,5906743,5906332,5905885,5905299,5904869,5904529,5903998,5903532,5903255,5902772	
chr6	5910705	5912870	5911237	5912807	-	MRPS11	Cre06.g288400.t1.1		5912725,5912285,5911765,5910705	5912870,5912628,5911899,5911378	
chr6	5912981	5915752	5913222	5915510	+	Cre06.g288450.t1.2	Cre06.g288450.t1.2		5912981,5914315,5914669,5915065,5915292	5913812,5914393,5914832,5915135,5915752	
chr6	5915754	5917920	5916432	5917540	-	RRA2	Cre06.g288500.t1.2		5917678,5915754	5917920,5917545	GT77 family
chr6	5918285	5923500	5919014	5923470	-	ECP76	Cre06.g288550.t1.2		5923360,5923131,5922779,5922498,5922211,5922027,5921759,5921383,5920975,5920613,5920164,5919778,5919449,5918285	5923500,5923232,5922952,5922570,5922292,5922056,5921871,5921619,5921115,5920784,5920296,5919814,5919563,5919247	extracellular polypeptide Ecp76; induced by sulfur starvation; PMID: 11598240
chr6	5924072	5930840	5924892	5930548	-	Cre06.g288600.t1.1	Cre06.g288600.t1.1		5930543,5930236,5929356,5924072	5930840,5930325,5929494,5929062	
chr6	5933069	5938422	5933570	5937577	+	Cre06.g288650.t1.2	Cre06.g288650.t1.2		5933069,5933554,5934958,5935212,5935767,5936083,5936452,5936972,5937382	5933358,5934618,5935022,5935328,5935898,5936230,5936663,5937103,5938422	
chr6	5938491	5947547	5938574	5946904	+	GYD1	Cre06.g288700.t1.2		5938491,5939600,5939977,5940438,5940904,5941156,5941628,5941987,5942322,5942651,5943016,5943306,5943502,5943774,5944161,5944510,5944837,5945126,5945316,5945684,5946034,5946414,5946834	5939195,5939733,5940133,5940488,5940961,5941339,5941745,5942052,5942462,5942842,5943124,5943366,5943583,5943962,5944265,5944637,5944949,5945178,5945482,5945801,5946228,5946589,5947547	Glycolate dehydrogenase, converting glycolate to glyoxylate; Identical to GDH cDNA sequence [GenBank ABG36932; Nakamura et al. (2005) Canadian Journal of Botany 83:820-833]; mitochondrial targeting (Target-P)
chr6	5947716	5949672	5947921	5948715	+	CBP20	Cre06.g288750.t1.2		5947716,5948595	5948293,5949672	putative nuclear cap-binding protein; CBP20 [Arabidopsis thaliana] accession AAD29697. NCBP interacting protein 1; cell proliferation-inducing gene 55 (human)
chr6	5949675	5953760	5950383	5953333	-	Cre06.g288800.t1.2	Cre06.g288800.t1.2		5953582,5953303,5952885,5952627,5952356,5952127,5951716,5951423,5951079,5950730,5949675	5953760,5953473,5952912,5952725,5952408,5952204,5951893,5951514,5951181,5950839,5950587	
chr6	5953871	5956530	5953905	5956073	+	Cre06.g288850.t1.2	Cre06.g288850.t1.2		5953871,5954293,5954531,5954752,5955024,5955491,5955932	5954097,5954339,5954628,5954909,5955166,5955593,5956530	
chr6	5956535	5958190	5957940	5958151	-	Cre06.g288900.t1.1	Cre06.g288900.t1.1		5956535	5958190	
chr6	5958245	5964700	5958561	5964105	-	Cre06.g288908.t1.2	Cre06.g288908.t1.2		5964382,5963118,5961991,5961701,5961318,5960979,5960526,5960107,5958967,5958687,5958245	5964700,5964277,5962980,5961812,5961399,5961123,5960742,5960211,5959883,5958884,5958561	
chr6	5966882	5970971	5967412	5969576	+	Cre06.g288950.t1.2	Cre06.g288950.t1.2		5966882,5967364	5967118,5970971	
chr6	5971771	5983102	5971981	5982797	+	Cre06.g289000.t1.1	Cre06.g289000.t1.1		5971771,5972430,5972712,5973182,5973610,5974184,5976616,5976931,5977137,5977373,5977843,5978096,5978387,5978662,5979170,5979506,5979849,5980132,5980286,5980615,5981080,5981322,5981553	5972250,5972568,5973050,5973483,5974035,5976476,5976838,5977061,5977248,5977752,5977971,5978280,5978519,5979003,5979418,5979682,5979956,5980177,5980502,5980902,5981227,5981418,5983102	
chr6	5983105	5988690	5984482	5988051	-	Cre06.g289033.t1.2	Cre06.g289033.t1.2		5987944,5987123,5985021,5983105	5988690,5987306,5986892,5984893	
chr6	5989364	5992930	5990703	5992213	-	Cre06.g289050.t1.1	Cre06.g289050.t1.1		5992607,5989364	5992930,5992382	
chr6	5995299	5998400	5996203	5997710	-	Cre06.g289100.t1.1	Cre06.g289100.t1.1		5998104,5995299	5998400,5997879	
chr6	5999245	6006060	5999592	6005825	-	MTP5	Cre06.g289150.t1.1		6005679,6005225,6004604,6004056,6003612,6003192,6002126,6001686,6001170,6000853,5999245	6006060,6005430,6004716,6004182,6003686,6003289,6002272,6001753,6001337,6001013,6000452	CDF protein family, related to HsZnT9 and AtMTP7, PMID: 15710683
chr6	6006259	6015895	6008234	6014907	-	Cre06.g289200.t1.1	Cre06.g289200.t1.1		6015394,6015060,6010261,6009821,6009372,6008938,6006259	6015895,6015313,6014945,6009938,6009471,6009062,6008690	
chr6	6018146	6022077	6019103	6020619	+	Cre06.g289300.t1.1	Cre06.g289300.t1.1		6018146,6018932,6019100	6018638,6018946,6022077	
chr6	6022696	6027393	6023092	6026488	+	PRFA2	Cre06.g289350.t1.1		6022696,6023504,6023824,6024184,6024616,6025325,6025844,6026335	6023378,6023613,6023910,6024339,6024942,6025504,6025969,6027393	
chr6	6027486	6039437	6027945	6038011	+	PDE11	Cre06.g289400.t1.2		6027486,6028622,6028996,6029398,6029772,6030020,6030590,6030806,6031382,6031614,6031894,6032246,6032428,6032787,6033165,6034597,6035035,6035398,6035597,6035792,6036079,6036391,6036604,6037045,6037297	6028032,6028750,6029163,6029506,6029851,6030162,6030668,6030928,6031428,6031716,6031972,6032292,6032541,6033037,6034413,6034845,6035149,6035440,6035620,6035927,6036203,6036463,6036761,6037186,6039437	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain
chr6	6027486	6039437	6027945	6038011	+	PDE11	Cre06.g289400.t2.1		6027486,6028622,6028996,6029398,6029772,6030020,6030590,6030806,6031382,6031614,6031894,6032246,6032428,6032787,6033165,6034600,6035035,6035398,6035597,6035792,6036079,6036391,6036604,6037045,6037297	6028032,6028750,6029163,6029506,6029851,6030162,6030668,6030928,6031428,6031716,6031972,6032292,6032541,6033037,6034413,6034845,6035149,6035440,6035620,6035927,6036203,6036463,6036761,6037186,6039437	Similar to calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain
chr6	6039856	6040557	6040018	6040341	+	CSB29	Cre06.g289426.t1.1		6039856,6039992,6040218	6039877,6040102,6040557	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr6	6041536	6053027	6041682	6052331	+	Cre06.g289450.t1.1	Cre06.g289450.t1.1		6041536,6042084,6042414,6042895,6043252,6043715,6044017,6045564,6045802,6046803,6048497,6050461,6050803,6051229,6051829,6052182	6041808,6042251,6042712,6043006,6043364,6043784,6045396,6045641,6046497,6048237,6050313,6050522,6051048,6051492,6051965,6053027	
chr6	6053041	6054795	6053700	6054458	-	Cre06.g289500.t1.2	Cre06.g289500.t1.2		6054327,6053041	6054795,6054091	
chr6	6054860	6057785	6055403	6057168	-	RPL32	Cre06.g289550.t1.2		6057646,6057031,6055956,6054860	6057785,6057178,6056090,6055533	Cytosolic 60S large ribosomal subunit protein L32
chr6	6057896	6065037	6058083	6064580	+	Cre06.g289600.t1.2	Cre06.g289600.t1.2		6057896,6058295,6058523,6059324,6059656,6063310	6058117,6058362,6059142,6059411,6063131,6065037	
chr6	6065043	6070975	6067512	6070186	-	Cre06.g289650.t1.2	Cre06.g289650.t1.2		6070741,6069991,6068894,6065043	6070975,6070222,6069856,6068655	
chr6	6072610	6076068	6074263	6075849	-	BET5	Cre06.g289700.t1.2		6075824,6075699,6075469,6074916,6072610	6076068,6075729,6075583,6075037,6074351	Expressed Protein. Conserved protein similar to BET5, a component of the TRAPP complex involved in ER to Golgi vesicle transport.
chr6	6079118	6083358	6080765	6083185	-	CYCD2	Cre06.g289750.t1.1		6083167,6082827,6082069,6081910,6081678,6081322,6079118	6083358,6083035,6082255,6081981,6081746,6081501,6081110	D type cyclin; contains LXCXE motif
chr6	6083476	6089657	6084004	6087643	+	CAM12	Cre06.g289800.t1.2		6083476,6083987,6084736,6085097,6085578,6085975,6086837,6087121,6087485	6083655,6084112,6084828,6085206,6085706,6086380,6086915,6087144,6089657	
chr6	6089722	6100307	6090016	6099668	+	SBE1	Cre06.g289850.t1.1		6089722,6090467,6090819,6091329,6091721,6092267,6092476,6092932,6093241,6093612,6094165,6094519,6094958,6095164,6095544,6096060,6096394,6096807,6097225,6097821,6098377,6099100,6099473	6090207,6090566,6090951,6091369,6091809,6092353,6092545,6093022,6093293,6093749,6094224,6094583,6095026,6095248,6095705,6096125,6096510,6096861,6097349,6097913,6098526,6099174,6100307	catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position
chr6	6100410	6107355	6103403	6107249	-	HEN2	Cre06.g289900.t1.1		6106967,6106782,6106266,6104723,6100410	6107355,6106874,6106273,6105738,6104590	Putative homologue of Arabidopsis Hua Enhancer 2, HEN2, DExH box helicase
chr6	6107729	6120965	6108903	6120791	-	HEL28	Cre06.g289950.t1.1		6120550,6120221,6119903,6119659,6119241,6118822,6118336,6118092,6117663,6116503,6116104,6115664,6115434,6114969,6114589,6114020,6113650,6113277,6112917,6112488,6112035,6111518,6111192,6110750,6110202,6109794,6109490,6107729	6120965,6120312,6119964,6119719,6119380,6118882,6118398,6118205,6117727,6116734,6116307,6115769,6115492,6115094,6114690,6114172,6113712,6113336,6113063,6112571,6112214,6111610,6111257,6110909,6110311,6109889,6109624,6109089	Putative homologue of Arabidopsis Hua Enhancer 2, HEN2, DExH box helicase
chr6	6122223	6124480	6123033	6124294	-	GIP1	Cre06.g290000.t1.1		6123499,6122223	6124480,6123150	
chr6	6124746	6132077	6125264	6131345	+	Cre06.g290050.t1.2	Cre06.g290050.t1.2		6124746,6125472,6127559,6130291,6130617,6131009	6125306,6127325,6129984,6130464,6130797,6132077	
chr6	6132090	6135566	6132717	6135358	-	SYP6	Cre06.g290100.t1.2		6135307,6135081,6134653,6134158,6133795,6133031,6132090	6135566,6135194,6134750,6134307,6133885,6133177,6132744	Expressed Protein. Similar to SYP6/syntaxin 6/Tlg1p Qc-SNAREs, involved in Golgi/endosomal trafficking. Identical to ChlreSyntaxin 6 (AAM12662)
chr6	6135706	6138917	6135828	6138124	+	CGL65	Cre06.g290150.t1.1		6135706,6135966,6136635,6137086,6137531,6137911	6135835,6136343,6136810,6137218,6137655,6138917	
chr6	6138930	6149305	6139914	6148812	-	CYG39	Cre06.g290200.t1.2		6147641,6146416,6144487,6143797,6142868,6142326,6141964,6141694,6141142,6140788,6138930	6149305,6147485,6146079,6143898,6142984,6142409,6142032,6141801,6141324,6140910,6140658	similar to guanylate cyclase soluble, beta-2 chain (GCS-beta-2) [Bos taurus]
chr6	6149600	6162065	6150183	6161503	-	Cre06.g290250.t1.1	Cre06.g290250.t1.1		6161848,6161323,6160693,6159783,6156413,6156072,6155447,6154999,6154590,6154032,6153417,6149600	6162065,6161523,6161119,6160626,6159534,6156147,6155865,6155105,6154637,6154160,6153566,6152955	
chr6	6162166	6164407	6162362	6164040	+	Cre06.g290300.t1.2	Cre06.g290300.t1.2		6162166,6162975,6163426,6163914	6162744,6163060,6163554,6164407	
chr6	6164546	6167151	6164866	6166804	+	Cre06.g290350.t1.2	Cre06.g290350.t1.2		6164546,6165228,6165797,6166154,6166543	6164926,6165302,6165825,6166283,6167151	
chr6	6167356	6173379	6167398	6172888	+	HDA5	Cre06.g290400.t1.1		6167356,6167728,6168217,6168661,6169236,6169839,6170190,6170604,6171583,6172126,6172316,6172888	6167569,6168009,6168279,6168954,6169328,6169952,6170320,6170651,6171829,6172206,6172820,6173379	Histone deacetylase.  ChromDB HDA3413
chr6	6167356	6173379	6167398	6172888	+	HDA5	Cre06.g290400.t2.1		6167356,6167728,6168217,6168661,6169236,6169839,6170190,6170604,6171583,6172126,6172888	6167569,6168009,6168279,6168954,6169328,6169952,6170320,6170651,6171829,6172820,6173379	Histone deacetylase.  ChromDB HDA3413
chr6	6175336	6183457	6175439	6181370	+	Cre06.g290450.t1.2	Cre06.g290450.t1.2		6175336,6175497,6175880,6176225,6176565,6176853,6177099,6177625,6178033,6178375,6179253,6179678,6179970,6180410,6180686,6181238	6175442,6175655,6175975,6176329,6176627,6176951,6177230,6177732,6178216,6178862,6179399,6179776,6180122,6180575,6181068,6183457	
chr6	6183912	6200153	6184173	6199547	+	Cre06.g290500.t1.1	Cre06.g290500.t1.1		6183912,6184485,6185133,6185575,6185913,6186299,6186522,6186718,6187278,6187873,6188205,6188626,6189292,6189855,6191063,6191661,6192169,6192530,6192842,6193127,6193473,6193862,6194286,6194829,6195201,6195533,6196407,6196939,6197193,6197680,6198162,6198592,6199045,6199424	6184197,6184545,6185197,6185645,6186020,6186335,6186560,6186846,6187595,6187958,6188308,6189134,6189675,6190697,6191227,6191935,6192259,6192664,6192982,6193236,6193711,6194122,6194652,6195028,6195260,6195669,6196674,6196988,6197364,6197936,6198405,6198772,6199153,6200153	Similar to phosphatidylinositol 3-kinase p150 regulatory subunit. ts lethal mutations isolated (PMID 25336509)
chr6	6200982	6212283	6201543	6212265	+	Cre06.g290550.t1.1	Cre06.g290550.t1.1		6200982,6201860,6202097,6202312,6202549,6202823,6203422,6204042,6204481,6204687,6205118,6205325,6205589,6206399,6206612,6207374,6207623,6207872,6208596,6208781,6209041,6209767,6209952,6210212,6210975,6211139,6211359,6212146	6201583,6201947,6202160,6202411,6202659,6202930,6203914,6204360,6204508,6204935,6205207,6205445,6206289,6206513,6207228,6207469,6207749,6208500,6208691,6208910,6209669,6209862,6210081,6210825,6211070,6211262,6211981,6212283	
chr6	6215092	6233523	6215404	6232602	+	PHC48	Cre06.g290676.t1.1		6215092,6216389,6216938,6217287,6217875,6218437,6229797,6230133,6230526,6230964,6231951,6232353,6232581	6216281,6216790,6217192,6217733,6218367,6229664,6230011,6230380,6230842,6231809,6232224,6232428,6233523	
chr6	6233916	6240603	6234571	6240576	-	RMG1	Cre06.g290800.t1.1		6240421,6240156,6240005,6239594,6237343,6236856,6236291,6235958,6235529,6235244,6233916	6240603,6240264,6240068,6239769,6239483,6237015,6236474,6236028,6235609,6235306,6235054	
chr6	6240702	6243456	6240906	6243034	+	Cre06.g290850.t1.2	Cre06.g290850.t1.2		6240702,6242170,6242360,6242584,6242886	6240997,6242259,6242397,6242639,6243456	
chr6	6244599	6247037	6244964	6246530	+	Cre06.g290900.t1.1	Cre06.g290900.t1.1		6244599,6244960,6245256,6245611,6245848,6246141,6246428	6244847,6245020,6245441,6245638,6245961,6246275,6247037	
chr6	6248112	6251903	6248385	6251432	+	RPS5	Cre06.g290950.t1.2		6248112,6248521,6249144,6249408,6250400,6251045,6251377	6248439,6248645,6249198,6249496,6250490,6251157,6251903	Cytosolic 40S small ribosomal subunit protein S5
chr6	6253366	6260421	6254743	6259671	-	Cre06.g291050.t1.1	Cre06.g291050.t1.1		6259881,6259611,6259286,6258456,6257215,6253366	6260421,6259774,6259456,6258980,6258284,6257069	
chr6	6253366	6260421	6254743	6259671	-	Cre06.g291050.t2.1	Cre06.g291050.t2.1		6259881,6259623,6259286,6258456,6257215,6253366	6260421,6259774,6259456,6258980,6258284,6257069	
chr6	6260532	6262686	6260817	6261749	+	Cre06.g291100.t1.2	Cre06.g291100.t1.2		6260532,6261050,6261475,6261687	6260918,6261161,6261523,6262686	
chr6	6262772	6268306	6263203	6267903	+	HEL29	Cre06.g291150.t1.1		6262772,6263445,6263819,6264571,6264917,6265242,6265881,6266408,6266851,6267118,6267452	6263297,6263584,6264412,6264717,6264988,6265511,6266081,6266697,6266944,6267221,6268306	
chr6	6268382	6270128	6268444	6269540	+	Cre06.g291200.t1.2	Cre06.g291200.t1.2		6268382,6268615,6268749,6269164,6269495	6268519,6268677,6268853,6269235,6270128	
chr6	6270408	6273611	6270804	6273458	-	Cre06.g291250.t1.1	Cre06.g291250.t1.1		6273302,6273167,6272768,6272216,6271878,6271334,6270408	6273611,6273238,6272892,6272377,6272052,6271696,6271044	
chr6	6275142	6276703	6275277	6275617	+	Cre06.g291300.t1.2	Cre06.g291300.t1.2		6275142	6276703	
chr6	6276705	6283031	6277032	6282618	-	Cre06.g291350.t1.1	Cre06.g291350.t1.1		6282921,6282568,6282285,6282074,6281808,6281505,6281218,6281006,6280734,6280464,6280216,6279850,6279537,6279249,6279003,6278809,6278604,6278313,6277835,6276705	6283031,6282696,6282459,6282139,6281935,6281667,6281364,6281122,6280874,6280562,6280311,6280069,6279703,6279392,6279101,6278870,6278694,6278405,6278167,6277689	
chr6	6283086	6286901	6283504	6286811	-	Cre06.g291400.t1.1	Cre06.g291400.t1.1		6286724,6286521,6286105,6285694,6285420,6285056,6284781,6284558,6284288,6284009,6283789,6283086	6286901,6286613,6286189,6285761,6285506,6285155,6284873,6284652,6284388,6284096,6283899,6283579	Galactokinase in the galacto- (EC:2.7.1.6), homoserine (EC:2.7.1.39), mevalonate (EC:2.7.1.36) and phosphomevalonate (EC:2.7.4.2) kinase (GHMP family)
chr6	6287243	6292541	6288336	6291654	-	Cre06.g291450.t1.2	Cre06.g291450.t1.2		6292393,6291789,6291480,6291034,6290725,6287243	6292541,6291891,6291682,6291087,6290948,6290530	null-allele passenger mutation was isolated (PMID 29743196)
chr6	6294246	6299391	6294931	6298577	-	RWP6	Cre06.g291500.t1.2		6298854,6298564,6298173,6295763,6294246	6299391,6298661,6298246,6297874,6295549	putative RWP-RK domain transcription factor [PMID: 15785851], however the domain is non-canonical in this gene (NWPsRK)
chr6	6299556	6302421	6300091	6302287	-	Cre06.g291550.t1.2	Cre06.g291550.t1.2		6302011,6301718,6301356,6301100,6300594,6299556	6302421,6301804,6301439,6301144,6300662,6300289	
chr6	6302522	6306383	6302553	6305831	+	ETK1	Cre06.g291600.t1.1		6302522,6302967,6303317,6303834,6304086,6304665,6304979,6305297,6305782	6302694,6303047,6303328,6303923,6304445,6304833,6305135,6305587,6306383	
chr6	6302522	6306383	6302553	6305831	+	ETK1	Cre06.g291600.t2.1		6302522,6302967,6303834,6304086,6304665,6304979,6305297,6305782	6302694,6303047,6303923,6304445,6304833,6305135,6305587,6306383	
chr6	6306532	6307931	6306943	6307790	-	FDX11	Cre06.g291650.t1.2		6307641,6307499,6307270,6306532	6307931,6307553,6307332,6307030	Possible 2Fe-2S ferredoxin; COG0633; cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain
chr6	6308042	6310744	6308179	6310193	+	RSP3	Cre06.g291700.t1.2		6308042,6308366,6308639,6309087	6308257,6308511,6308859,6310744	Flagellar radial spoke protein 3 (RSP3) [PMID: 16507594]; an axonemal A-kinase anchoring protein KAP [PMID: 11309423; PMID: 16571668; PMID: 16267272; GI:134041]. Gene originally termed PF14 [PMID: 7204490; PMID: 2745550; PMID: 2377611]
chr6	6310756	6319001	6312669	6318854	-	Cre06.g291750.t1.1	Cre06.g291750.t1.1		6316619,6315429,6310756	6319001,6316310,6315228	
chr6	6319102	6323453	6319512	6322832	+	COQ2	Cre06.g291800.t1.2		6319102,6319850,6320485,6320933,6321335,6321578,6322080,6322499	6319632,6320250,6320560,6321053,6321395,6321647,6322229,6323453	para-hydroxybenzoate-polyprenyltransferase, mitochondrial precursor; UbiA homolog
chr6	6323456	6331508	6324436	6331270	-	Cre06.g291850.t1.2	Cre06.g291850.t1.2		6331259,6330712,6330289,6329953,6329546,6329253,6328855,6328583,6328358,6327905,6327554,6327111,6326729,6326435,6326000,6325602,6325108,6324719,6323456	6331508,6330893,6330475,6330151,6329584,6329315,6328992,6328679,6328397,6328166,6327714,6327273,6326882,6326532,6326181,6325734,6325323,6324868,6324544	
chr6	6323456	6331491	6324436	6331270	-	Cre06.g291850.t2.1	Cre06.g291850.t2.1		6331259,6330712,6330289,6329953,6329253,6328855,6328583,6328358,6327905,6327554,6327111,6326729,6326435,6326000,6325602,6325108,6324719,6323456	6331491,6330893,6330484,6330151,6329315,6328992,6328679,6328397,6328166,6327714,6327273,6326882,6326532,6326181,6325734,6325323,6324868,6324544	
chr6	6323456	6331508	6324436	6331270	-	Cre06.g291850.t3.1	Cre06.g291850.t3.1		6331259,6330712,6330289,6329953,6329253,6328855,6328583,6328358,6327905,6327554,6327111,6326729,6326435,6326000,6325602,6325108,6324719,6323456	6331508,6330893,6330475,6330151,6329315,6328992,6328679,6328397,6328166,6327714,6327273,6326882,6326532,6326181,6325734,6325323,6324868,6324544	
chr6	6331642	6335455	6332046	6334719	+	PHD1	Cre06.g291900.t1.2		6331642,6332729,6333384,6333632,6334031,6334279,6334632	6332122,6332885,6333527,6333791,6334084,6334356,6335455	Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis; cd02988
chr6	6335502	6345891	6335508	6345617	+	MRS4	Cre06.g291950.t1.2		6335502,6336609,6337489,6338266,6338771,6341218,6341542,6342101,6344010,6344501,6344747,6345047,6345613	6336407,6336978,6337557,6338358,6341062,6341268,6341667,6343723,6344095,6344555,6344800,6345273,6345891	Putative Mg2+ dependent mitochondrial pre-mRNA splicing factor, with homology to CorA, a Mg2+ transporter protein.  May be essential for group II intron splicing in mitochondria in response to Mg2+ (see PMID: 1154418).  Homologous to the MRS2 splicing fa
chr6	6345930	6351581	6346141	6351532	-	Cre06.g292000.t1.1	Cre06.g292000.t1.1		6351259,6350871,6350494,6350025,6349652,6349038,6348594,6347674,6347236,6345930	6351581,6350981,6350592,6350276,6349700,6349396,6348761,6347859,6347331,6346861	
chr6	6351938	6359316	6354431	6359018	-	MMP21	Cre06.g292050.t1.2		6358919,6358226,6357859,6357487,6357148,6356702,6356349,6355928,6355521,6355198,6354822,6351938	6359316,6358426,6357960,6357587,6357250,6356801,6356503,6356157,6355747,6355285,6354969,6354683	Matrix metalloproteinase belonging to the M11 peptidase family
chr6	6359371	6365246	6360302	6365125	-	Cre06.g292100.t1.2	Cre06.g292100.t1.2		6364918,6364550,6364223,6363739,6363455,6363002,6362552,6361808,6361357,6360768,6359371	6365246,6364667,6364278,6363974,6363559,6363137,6362668,6361900,6361435,6361057,6360575	
chr6	6365407	6372468	6365524	6371508	+	Cre06.g292150.t1.1	Cre06.g292150.t1.1		6365407,6366176,6366494,6366939,6367294,6367626,6371508	6365659,6366252,6366668,6366995,6367338,6371083,6372468	
chr6	6365407	6371378	6365524	6371031	+	Cre06.g292150.t2.1	Cre06.g292150.t2.1		6365407,6366176,6366494,6366939,6367294,6367626	6365659,6366252,6366668,6366995,6367338,6371378	
chr6	6371427	6372558	6371533	6371955	+	CAM13	Cre06.g292183.t1.1		6371427,6371861	6371721,6372558	
chr6	6372590	6377286	6374934	6376981	-	Cre06.g292216.t1.1	Cre06.g292216.t1.1		6376898,6375963,6372590	6377286,6376411,6375164	
chr6	6377397	6410484	6377606	6409491	+	PHC50	Cre06.g292249.t1.1		6377397,6378206,6378621,6378974,6379931,6380338,6381971,6382408,6382788,6403574,6404916,6406312,6406733,6407532,6407971,6408305,6408884,6409367	6377764,6378447,6378710,6379461,6380098,6381102,6382138,6382604,6386873,6404831,6406229,6406508,6407394,6407771,6408110,6408689,6409169,6410484	
chr6	6403555	6405036	6403650	6405002	-	Cre06.g292282.t1.1	Cre06.g292282.t1.1		6404941,6403843,6403555	6405036,6404874,6403736	
chr6	6412147	6413598	6412831	6413147	+	Cre06.g292315.t1.1	Cre06.g292315.t1.1		6412147	6413598	
chr6	6413631	6420896	6414269	6420467	-	AOC4	Cre06.g292350.t1.2		6420449,6419989,6419658,6419084,6418576,6418095,6417863,6417378,6416942,6416079,6415565,6414796,6413631	6420896,6420096,6419779,6419248,6418720,6418162,6417905,6417530,6417037,6416189,6415689,6414955,6414479	amino acid carrier 4; belongs to APC (Amino acid Polyamine organoCation) family
chr6	6420997	6424598	6421108	6423965	+	SOUL5	Cre06.g292400.t1.1		6420997,6421480,6421726,6422123,6422546,6422920,6423128,6423346,6423932	6421217,6421561,6421934,6422227,6422681,6422974,6423184,6423531,6424598	expressed protein conserved in photosynthetic organisms; the DUF2358 domain is also found in SOUL3 and SOUL4
chr6	6424601	6428166	6424759	6428142	-	PUS13	Cre06.g292450.t1.2		6428091,6427774,6427209,6426714,6426208,6425795,6425272,6424601	6428166,6427887,6427540,6427077,6426480,6425914,6425515,6425097	
chr6	6428267	6432498	6428362	6432058	+	CYN23b	Cre06.g292500.t1.2		6428267,6428908,6429343,6429822,6430653,6431069,6431365,6431957	6428562,6428995,6429403,6429935,6430758,6431139,6431445,6432498	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; two  alternatively spliced isoforms
chr6	6428267	6432498	6428362	6432058	+	CYN23	Cre06.g292500.t2.1		6428267,6428908,6429343,6429822,6431069,6431365,6431957	6428562,6428995,6429403,6429927,6431139,6431445,6432498	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; two  alternatively spliced isoforms
chr6	6428299	6432498	6428362	6432058	+	CYN23	Cre06.g292500.t3.1		6428299,6428908,6429343,6430653,6431069,6431365,6431957	6428562,6428995,6429403,6430758,6431139,6431445,6432498	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type; two  alternatively spliced isoforms
chr6	6432501	6435386	6433322	6434908	-	FAP15	Cre06.g292550.t1.2		6434730,6434465,6434127,6433810,6433509,6432501	6435386,6434610,6434297,6434052,6433643,6433364	Protein Phosphatase 1a; Serine/Threonine Protein Phosphatase 1 alpha (gi:5153113); Associated with flagellar axoneme [PMID: 10591628]; found in the flagellar proteome [PMID: 15998802]
chr6	6435811	6440488	6436312	6439848	-	OPR26	Cre06.g292600.t1.1		6438402,6437871,6437435,6437095,6436676,6435811	6440488,6438268,6437612,6437228,6436807,6436400	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 76 codons at 5'-end: MSIYYGLSRSPRALCPDGTARVLPGAGRVRPQYCRAARPQALAFDRALPASAHKISTSRLWQSCVTRCQQRATGIG
chr6	6440617	6447498	6441304	6446788	+	ROC93	Cre06.g292650.t1.1		6440617,6441288,6442643,6442997,6443309,6443758,6444518,6445027	6441070,6442447,6442783,6443133,6443567,6444377,6444737,6447498	Transcription elongation factor involved in circadian rhythms; in Matsuo et al. (2008), roc93 (rhythm of chloroplast) circadian mutant locus maps here
chr6	6447570	6452158	6447830	6451245	+	Cre06.g292700.t1.2	Cre06.g292700.t1.2		6447570,6448070,6448437,6448618,6449097,6449554,6450062,6450571,6450861,6451097	6447953,6448165,6448454,6448731,6449270,6449697,6450214,6450660,6450919,6452158	
chr6	6452647	6457948	6452983	6456648	+	Cre06.g292750.t1.2	Cre06.g292750.t1.2		6452647,6453270,6454051,6455159,6455593,6456119,6456492	6453030,6453664,6454185,6455356,6455780,6456277,6457948	null-allele mutant was isolated (PMID 29743196)
chr6	6457975	6460161	6458894	6460025	-	UBC17	Cre06.g292800.t1.1		6459880,6459730,6459503,6459292,6457975	6460161,6459803,6459580,6459361,6458995	
chr6	6460347	6465228	6460759	6464782	+	CDC6	Cre06.g292850.t1.2		6460347,6461994,6462423,6462814,6463130,6463578,6464593	6461864,6462310,6462639,6462938,6463258,6464318,6465228	Homologous to eukaryotic CDC6; AAA+ superfamily ATPase
chr6	6465927	6472828	6466427	6471616	+	Cre06.g292900.t1.1	Cre06.g292900.t1.1		6465927,6466341,6467741,6468643,6469074,6469432,6470130,6470406,6470971,6471523	6466192,6467225,6467965,6468724,6469148,6469648,6470253,6470591,6471144,6472828	
chr6	6472917	6474858	6473020	6474015	+	Cre06.g292950.t1.2	Cre06.g292950.t1.2		6472917,6473514,6473897	6473222,6473601,6474858	
chr6	6474907	6480818	6475142	6480480	+	Cre06.g293000.t1.1	Cre06.g293000.t1.1		6474907,6475473,6475768,6476162,6476426,6476860,6477330,6477592,6478003,6478539,6479123,6479470,6479896,6480268	6475320,6475534,6475971,6476212,6476509,6476943,6477380,6477720,6478094,6478716,6479274,6479586,6480026,6480818	ts-lethal mutations block in S/M (PMID 25336509)
chr6	6480821	6496216	6481386	6495905	-	AMT3	Cre06.g293051.t1.1		6495800,6495633,6494027,6493573,6493118,6492737,6492265,6491812,6491330,6490759,6490165,6484218,6483772,6483407,6482893,6482351,6481939,6480821	6496216,6495715,6494177,6493611,6493266,6492842,6492417,6491928,6491474,6490900,6490328,6484355,6483950,6483544,6482987,6482469,6482051,6481599	Belongs to AMT1 family (AMT1;3 or AMT1.3); corresponds to AF59497, mRNA complete cds (PMID: 15821986).  Previously annotated as AMT1C
chr6	6497165	6499941	6497796	6499897	-	Cre06.g293100.t1.2	Cre06.g293100.t1.2		6499846,6499656,6499234,6498538,6498175,6497165	6499941,6499772,6499331,6499020,6498265,6497895	
chr6	6508851	6513656	6509995	6513370	-	PGM12	Cre06.g293150.t1.2		6513184,6512744,6512236,6511781,6511448,6511048,6510495,6508851	6513656,6512843,6512273,6511886,6511568,6511219,6510626,6510193	
chr6	6514312	6519626	6516979	6519531	-	Cre06.g293200.t1.1	Cre06.g293200.t1.1		6519424,6518529,6514312	6519626,6519232,6518295	
chr6	6519727	6524368	6519767	6523956	+	Cre06.g293250.t1.1	Cre06.g293250.t1.1		6519727,6519972,6520183,6520479,6520705,6521085,6521500,6521788,6522223,6522631,6523671	6519844,6520041,6520193,6520501,6520806,6521181,6521539,6521992,6522336,6523337,6524368	
chr6	6524617	6535346	6525307	6532856	+	Cre06.g293300.t1.1	Cre06.g293300.t1.1		6524617,6525938,6526395,6526838,6528040,6528455,6528833,6529154,6529544,6530023	6525573,6526008,6526546,6527848,6528216,6528583,6528915,6529251,6529709,6535346	
chr6	6536725	6539410	6537545	6537780	-	Cre06.g293350.t1.1	Cre06.g293350.t1.1		6539395,6539086,6538691,6536725	6539410,6539130,6538922,6538364	
chr6	6539505	6544080	6540524	6543934	-	Cre06.g293362.t1.2	Cre06.g293362.t1.2		6543537,6543356,6542998,6542470,6541997,6541477,6539505	6544080,6543382,6543265,6542695,6542228,6541831,6541254	
chr6	6544199	6552950	6544470	6552912	-	Cre06.g293400.t1.2	Cre06.g293400.t1.2		6552599,6552217,6551596,6551177,6550819,6550420,6550076,6549803,6549336,6549042,6548728,6548485,6548164,6547719,6547121,6546846,6546168,6545295,6544199	6552950,6552363,6551907,6551292,6550866,6550506,6550145,6549909,6549456,6549124,6548793,6548626,6548243,6547803,6547282,6546943,6546561,6545789,6544865	
chr6	6553584	6561640	6554043	6561434	-	Cre06.g293450.t1.2	Cre06.g293450.t1.2		6561280,6560704,6560468,6560018,6559639,6559099,6558325,6557896,6557537,6556856,6556390,6556069,6555790,6555086,6554597,6554302,6553584	6561640,6560918,6560518,6560233,6559813,6559245,6558469,6557932,6557632,6557210,6556571,6556138,6555871,6555248,6554681,6554424,6554060	
chr6	6553584	6561640	6554043	6561434	-	Cre06.g293450.t2.1	Cre06.g293450.t2.1		6561280,6560704,6560468,6560018,6559639,6559099,6558325,6557896,6557537,6556856,6556390,6556069,6555790,6555086,6554597,6554302,6553584	6561640,6560918,6560518,6560233,6559813,6559245,6558469,6557932,6557623,6557210,6556571,6556138,6555871,6555248,6554681,6554424,6554060	
chr6	6562451	6572272	6562778	6571501	+	DEGO2	Cre06.g293516.t1.1		6562451,6563692,6564079,6564698,6565373,6565732,6566066,6566374,6566799,6567685,6568297,6568876,6569484,6570073,6570471,6571386	6563351,6563775,6564351,6565085,6565431,6565776,6566178,6566485,6567371,6567912,6568520,6569006,6569719,6570153,6570835,6572272	Similar to serine proteases/chaperones of the trypsin-like DegP family (HtrA) (protease Do) but lacks all three catalytic residues: H>G, S>W (confirmed in Volvox ortholog); contains patch of acidic residues that could mediate association with DEGO1; described in Chlamydomonas sourcebook, vol. II,p701
chr6	6572315	6577630	6573178	6577498	-	Cre06.g293582.t1.1	Cre06.g293582.t1.1		6577489,6577095,6576648,6576268,6576011,6575553,6575168,6574685,6574203,6573837,6573466,6572315	6577630,6577154,6576773,6576383,6576056,6575712,6575327,6574916,6574412,6573935,6573558,6573316	May contain additional coding sequence PMID: 27175017
chr6	6608154	6614380	6608207	6614178	-	Cre06.g293650.t1.1	Cre06.g293650.t1.1		6614130,6613299,6612833,6612326,6611882,6611371,6610815,6610320,6609761,6609121,6608812,6608328,6608154	6614380,6614006,6613116,6612401,6612049,6611559,6611027,6610505,6610110,6609446,6608882,6608427,6608212	
chr6	6614711	6616474	6614885	6615883	+	MRPL7	Cre06.g293700.t1.2		6614711,6615572,6615857	6615359,6615650,6616474	GTP binding protein
chr6	6616861	6620889	6617880	6620680	-	Cre06.g293750.t1.2	Cre06.g293750.t1.2		6620635,6620090,6619687,6619510,6619222,6618718,6616861	6620889,6620299,6619899,6619542,6619379,6619086,6618577	
chr6	6616861	6620890	6617880	6620680	-	Cre06.g293750.t2.1	Cre06.g293750.t2.1		6620635,6620090,6619687,6619510,6619222,6618718,6616861	6620890,6620299,6619893,6619542,6619379,6619086,6618577	
chr6	6622931	6630462	6623535	6629403	+	ARS16	Cre06.g293800.t1.1		6622931,6623486,6623898,6624290,6624672,6624963,6625370,6625820,6626238,6626598,6626850,6627109,6627541,6627783,6628276,6628674,6629145	6623340,6623649,6624072,6624407,6624754,6625075,6625548,6626020,6626323,6626665,6626882,6627192,6627583,6628005,6628432,6628937,6630462	
chr6	6630880	6633067	6630947	6632410	+	CAG2	Cre06.g293850.t1.2		6630880,6631295,6631467,6632191	6631208,6631395,6631725,6633067	Putative carbonic anhydrase (gamma-type) identical to AAS48196 associated mitochondrial complex I [PMID: 15450959; PMID: 15710684]. Arabidopsis homologs erroneously described as ferripyochelin-binding proteins (FBP2)
chr6	6633075	6636560	6633414	6636359	-	Cre06.g293900.t1.1	Cre06.g293900.t1.1		6636302,6635846,6635429,6633837,6633075	6636560,6636127,6635569,6635183,6633642	
chr6	6636679	6640802	6636772	6639893	+	SHMT2	Cre06.g293950.t1.2		6636679,6637103,6637589,6637945,6638547,6638813,6639282,6639651	6636912,6637330,6637757,6638111,6638661,6638998,6639501,6640802	Serine hydroxymethyltransferase, by homology to Arabidopsis gene (Identifier 023254); found in the flagellar proteome [PMID: 15998802]
chr6	6641049	6644278	6641474	6644188	-	CGL113	Cre06.g294000.t1.1		6644098,6643958,6643562,6643059,6642626,6642462,6642041,6641797,6641049	6644278,6643972,6643672,6643142,6642739,6642518,6642122,6641856,6641560	Conserved in the Green Lineage
chr6	6645313	6660830	6645779	6660530	-	Cre06.g294050.t1.1	Cre06.g294050.t1.1		6660511,6660149,6659671,6659065,6658835,6658557,6658316,6657645,6657257,6657029,6656731,6656427,6656136,6655829,6655538,6655300,6654681,6654389,6654216,6654020,6653802,6653401,6653120,6652795,6652482,6652241,6652022,6651815,6651489,6651187,6650895,6650490,6650192,6649615,6649127,6648857,6648406,6648079,6647775,6647526,6647166,6646839,6646561,6646080,6645313	6660830,6660279,6659994,6659403,6658949,6658713,6658394,6658200,6657483,6657143,6656911,6656625,6656282,6655993,6655678,6655434,6655155,6654558,6654302,6654071,6653899,6653688,6653272,6652980,6652688,6652379,6652119,6651914,6651666,6651319,6651036,6650761,6650317,6650036,6649466,6648991,6648653,6648291,6647934,6647627,6647331,6647038,6646701,6646342,6645954	
chr6	6660883	6665028	6661556	6664936	-	Cre06.g294100.t1.1	Cre06.g294100.t1.1		6664873,6664495,6664232,6664048,6663753,6662220,6661944,6660883	6665028,6664606,6664385,6664075,6663939,6663608,6662113,6661781	null-allele mutant was isolated (PMID 29743196)
chr6	6665291	6669112	6665573	6668908	+	Cre06.g294150.t1.1	Cre06.g294150.t1.1		6665291,6668030,6668510	6667880,6668291,6669112	
chr6	6669202	6676160	6669622	6675953	-	Cre06.g294200.t1.1	Cre06.g294200.t1.1		6675315,6675017,6674689,6674292,6673979,6673557,6673159,6672818,6672484,6671755,6671424,6670891,6670274,6670080,6669841,6669202	6676160,6675107,6674771,6674472,6674167,6673787,6673258,6672987,6672633,6671937,6671546,6671107,6670614,6670118,6669897,6669730	
chr6	6677839	6683140	6678671	6683106	-	PHC49	Cre06.g294250.t1.2		6681529,6680787,6680262,6679753,6679415,6678947,6677839	6683140,6681412,6680641,6680140,6679599,6679035,6678774	null-allele passenger mutation was isolated (PMID 29743196)
chr6	6683241	6688722	6683277	6688343	+	Cre06.g294301.t1.1	Cre06.g294301.t1.1		6683241,6683948,6684995,6685760	6683310,6684760,6685456,6688722	
chr6	6710541	6721730	6710553	6720502	-	Cre06.g294350.t1.2	Cre06.g294350.t1.2		6721074,6720264,6719992,6719338,6719040,6718075,6717673,6716341,6715939,6714607,6714205,6710645,6710541	6721730,6720505,6720084,6719672,6719207,6718941,6717840,6717408,6716106,6715674,6714372,6713936,6710591	
chr6	6724677	6731808	6724918	6730963	+	NIS1	Cre06.g294400.t1.1		6724677,6725064,6725340,6725723,6726161,6726482,6726937,6727215,6727504,6727800,6728337,6728657,6729009,6729431,6730858	6724991,6725126,6725453,6725922,6726247,6726613,6727051,6727312,6727653,6727973,6728520,6728750,6729242,6729593,6731808	transmembrane glycoprotein, forms the gamma-secretase complex with presenilin, aph-1 and pen-2; involved in regulated intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch; null-allele passenger mutation was isolated (PMID 29743196)
chr6	6733020	6737955	6733074	6737499	+	Cre06.g294450.t1.1	Cre06.g294450.t1.1		6733020,6733399,6733690,6734405,6734662,6735186,6735564,6736100,6736535,6736969,6737305,6737487	6733234,6733438,6733765,6734470,6734834,6735267,6735653,6736214,6736671,6737082,6737361,6737955	Possible 2,5-didehydrogluconate activity
chr6	6738047	6741211	6738244	6740162	+	Cre06.g294500.t1.1	Cre06.g294500.t1.1		6738047,6738238,6738637,6738992,6739652	6738117,6738376,6738751,6739116,6741211	
chr6	6741297	6745178	6741401	6744725	+	Cre06.g294550.t1.2	Cre06.g294550.t1.2		6741297,6741799,6742267,6742503,6743013,6743882,6744213,6744606	6741590,6741915,6742331,6742689,6743466,6744015,6744312,6745178	
chr6	6745237	6747948	6745265	6747303	+	Cre06.g294600.t1.2	Cre06.g294600.t1.2		6745237,6745749	6745538,6747948	
chr6	6747951	6753246	6748761	6753127	-	AGT1	Cre06.g294650.t1.2		6752971,6752196,6751620,6751214,6750790,6750399,6749958,6749457,6747951	6753246,6752303,6751815,6751344,6750943,6750539,6750057,6749541,6748959	putative alanine-glyoxylate transaminase (EC 2.6.1.44); Present in thylakoid proteome based on mass spectrometric peptide identification; mitochondrial localization assumed [PMID: 17078018]; predicted by Target-P as mitochondrial; peroxisomal location supported by C-terminal PTS1 signal GKL
chr6	6753347	6769628	6753455	6769251	+	Cre06.g294700.t1.1	Cre06.g294700.t1.1		6753347,6753638,6753782,6754147,6754831,6754997,6755270,6756315,6756603,6756920,6757185,6757521,6757833,6758926,6759357,6761939,6766197,6767020,6767696,6768188,6768446,6768750,6769133	6753569,6753706,6754025,6754730,6754906,6755133,6756153,6756480,6756767,6757045,6757391,6757688,6758792,6759219,6761858,6766046,6766877,6767549,6768022,6768328,6768528,6768899,6769628	ts-lethal mutant was isolated (PMID 29743196)
chr6	6769949	6773844	6769991	6773164	+	CHLG	Cre06.g294750.t1.2		6769949,6770180,6770467,6770965,6771888,6772254,6772996	6770103,6770347,6770649,6771209,6771997,6772419,6773844	Chlorophyll synthetase, chloroplast precursor; ChlG; chlorophyll synthase [PMID: 1584938]; Predicted chloroplast transit peptide 1-43; UbiA prenyltransferase family protein
chr6	6774617	6776048	6775002	6775812	+	Cre06.g294776.t1.1	Cre06.g294776.t1.1		6774617,6775812	6775564,6776048	
chr6	6778127	6781408	6778205	6780312	+	CPLD37	Cre06.g294800.t1.1		6778127,6778721,6779114,6779361,6779718,6780126	6778370,6778915,6779185,6779441,6779921,6781408	Conserved in the Plant Lineage and Diatoms; similar to Arabidopsis protein predicted to be an inner envelope membrane transporter
chr6	6781415	6784274	6782196	6784011	-	UBC10	Cre06.g294850.t1.2		6783860,6783645,6783444,6782789,6781415	6784274,6783734,6783532,6782859,6782287	ubiquitin carrier-like protein; related to Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
chr6	6784321	6785376	6784724	6785046	-	Cre06.g294876.t1.1	Cre06.g294876.t1.1		6784321	6785376	
chr6	6785487	6786058	6785514	6785944	+	Cre06.g294900.t1.2	Cre06.g294900.t1.2		6785487	6786058	
chr6	6786157	6791329	6786421	6790863	+	ENR1	Cre06.g294950.t1.1		6786157,6786730,6786915,6787507,6788034,6788509,6789222,6790202,6790685	6786665,6786767,6786980,6787653,6788129,6788568,6789383,6790335,6791329	Enoyl-[acyl-carrier-protein] reductase, NADH-dependent
chr6	6791331	6806206	6791955	6806128	-	Cre06.g295001.t1.1	Cre06.g295001.t1.1		6806002,6805552,6804850,6804167,6803542,6802603,6802109,6801628,6801040,6800588,6800252,6799440,6797125,6795972,6794595,6793202,6792687,6791331	6806206,6805881,6805190,6804283,6803593,6803157,6802294,6801808,6801317,6800659,6800356,6799827,6799186,6796940,6795563,6794120,6792860,6792195	
chr6	6806367	6816878	6806449	6816248	+	Cre06.g295050.t1.1	Cre06.g295050.t1.1		6806367,6807068,6808028,6808557,6809139,6809969,6810499,6811455,6811990,6812248,6814094,6814566,6815083,6815693,6816035	6806521,6807739,6808159,6808666,6809301,6810167,6811162,6811706,6812059,6813681,6814252,6814685,6815226,6815776,6816878	null-allele mutant was isolated (PMID 29743196)
chr6	6817340	6826836	6817822	6826445	-	Cre06.g295100.t1.1	Cre06.g295100.t1.1		6826425,6825981,6825707,6825352,6824968,6824519,6823921,6823355,6823021,6822715,6822385,6822141,6821854,6821529,6821062,6820621,6820041,6819769,6819459,6819158,6818738,6818489,6818019,6817340	6826836,6826090,6825813,6825460,6825156,6824796,6824361,6823439,6823166,6822856,6822533,6822282,6821981,6821649,6821247,6820898,6820481,6819853,6819604,6819299,6818886,6818630,6818186,6817836	
chr6	6826977	6836973	6827073	6835963	+	Cre06.g295150.t1.1	Cre06.g295150.t1.1		6826977,6827539,6827908,6828192,6828604,6830195,6830825,6831357,6831515,6831783,6832272,6832803,6833256,6834698,6835127,6835540,6835891	6827276,6827692,6827988,6828472,6829849,6830590,6831178,6831383,6831655,6831926,6832468,6832904,6834354,6834850,6835276,6835674,6836973	
chr6	6837075	6843266	6838545	6842905	-	CPH1	Cre06.g295200.t1.2		6842803,6842004,6841756,6841383,6841018,6840648,6837075	6843266,6842377,6841909,6841547,6841209,6840876,6840356	most similar to plant cryptochromes; (CRY1) (PMID: 7632915); contains 6-4 photolyase and FAD-binding domains; C-terminal extension shows no similarity to that in other cryptochromes (except Volvox) and is important for stability in the dark and degradation in the light, possibly via post-translational modifications (PMID: 15064387)
chr6	6843917	6847627	6844153	6846557	+	Cre06.g295250.t1.1	Cre06.g295250.t1.1		6843917,6844261,6844899,6845270,6845629,6846178,6846344	6844170,6844600,6845006,6845351,6845741,6846219,6847627	
chr6	6847651	6849196	6848077	6848850	-	Cre06.g295301.t1.1	Cre06.g295301.t1.1		6848785,6847651	6849196,6848534	
chr6	6853157	6855477	6853784	6854133	+	Cre06.g295350.t1.2	Cre06.g295350.t1.2		6853157	6855477	
chr6	6859772	6860486	6859917	6860101	-	Cre06.g295376.t1.1	Cre06.g295376.t1.1		6859772	6860486	
chr6	6862591	6867056	6864188	6867000	-	MCP11	Cre06.g295400.t1.2		6866909,6866752,6866413,6866149,6865627,6865149,6864821,6862591	6867056,6866838,6866474,6866245,6865776,6865219,6864962,6864445	Present in thylakoid proteome based on mass spectrometric peptide identification; mitochondrial localization assumed [PMID: 17078018]
chr6	6867177	6872537	6867283	6872224	+	HPR1	Cre06.g295450.t1.2		6867177,6867480,6867948,6868493,6868877,6869458,6869884,6870632,6871624,6872059	6867403,6867671,6868034,6868538,6869019,6869571,6869991,6870795,6871741,6872537	Putative hydroxypyruvate reductase, catalyzing the NADH-dependent conversion of hydroxypyruvate to glycerate; contains sequence nearly identical to Chlamydomonas HPR (GenBank AAW29979); predicted by Target-P to be organelle targeted
chr6	6872597	6874244	6872688	6873959	+	Cre06.g295500.t1.2	Cre06.g295500.t1.2		6872597,6873131,6873346	6872960,6873190,6874244	
chr6	6874251	6879108	6876319	6878514	-	Cre06.g295550.t1.2	Cre06.g295550.t1.2		6878435,6878007,6877168,6876775,6876518,6874251	6879108,6878161,6877743,6876965,6876596,6876352	
chr6	6879207	6885099	6879240	6884805	+	RME1	Cre06.g295600.t1.2		6879207,6879734,6879967,6880491,6881044,6881523,6881928,6882204,6882722,6883746,6884075,6884543	6879513,6879831,6880074,6880774,6881242,6881654,6882032,6882305,6882839,6883839,6884258,6885099	RNA methylase with conserved N-6 adenine-specific DNA methylase site; may have protein disulfide reductase activity
chr6	6885147	6887878	6885195	6887245	+	Cre06.g295650.t1.1	Cre06.g295650.t1.1		6885147,6885419,6885794,6887103	6885338,6885588,6886703,6887878	
chr6	6887881	6893656	6888589	6893407	-	MCM3	Cre06.g295700.t1.1		6892765,6892299,6892047,6891684,6891477,6891193,6890949,6890568,6890212,6889802,6889170,6888933,6887881	6893656,6892373,6892151,6891852,6891559,6891328,6891055,6890783,6890397,6890041,6889676,6889049,6888745	Homologous to MCM3 DNA replication protein
chr6	6894297	6908268	6894480	6907630	+	Cre06.g295826.t1.1	Cre06.g295826.t1.1		6894297,6894990,6895602,6896037,6906011,6906485,6906803,6907109,6907466	6894726,6895352,6895694,6896224,6906246,6906605,6906952,6907233,6908268	
chr6	6908311	6916536	6908422	6916440	-	Cre06.g295950.t1.1	Cre06.g295950.t1.1		6916407,6914798,6914459,6910324,6909683,6909021,6908780,6908311	6916536,6916331,6914670,6914334,6910093,6909521,6908890,6908578	
chr6	6916707	6918198	6916947	6917933	+	PSK1	Cre06.g296000.t1.2		6916707,6917215	6917033,6918198	Putative O-phosphoseryl-tRNA(Sec) kinase, involved in selenocysteine biosynthesis
chr6	6918527	6926028	6919052	6924444	+	FMO6	Cre06.g296050.t1.1		6918527,6919353,6919624,6919909,6920071,6920391,6920608,6921067,6921349,6921547,6921900	6919166,6919437,6919706,6919977,6920151,6920456,6920946,6921159,6921400,6921761,6926028	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; linked to FMO3 and FMO7
chr6	6926041	6930886	6926442	6930675	-	Cre06.g296100.t1.2	Cre06.g296100.t1.2		6930491,6930251,6929994,6929533,6929114,6928812,6928575,6928304,6927892,6927586,6927224,6926768,6926041	6930886,6930355,6930123,6929716,6929179,6928901,6928618,6928379,6928029,6927711,6927361,6926928,6926590	
chr6	6932837	6943178	6933017	6942462	+	Cre06.g296150.t1.2	Cre06.g296150.t1.2		6932837,6933656,6934466,6935047,6935339,6935540,6935800,6936144,6936601,6936999,6937302,6938523,6940093,6940647,6940954,6941268,6941640	6933384,6933817,6934545,6935121,6935413,6935619,6935905,6936191,6936768,6937046,6937454,6938681,6940262,6940767,6941016,6941375,6943178	
chr6	6943257	6949158	6943565	6947724	+	Cre06.g296200.t1.2	Cre06.g296200.t1.2		6943257,6944122,6944564,6945211,6945767,6946110,6946579,6947196,6947700	6943763,6944200,6944712,6945336,6945889,6946239,6946655,6947540,6949158	
chr6	6949207	6956448	6949236	6955589	+	SYK1	Cre06.g296250.t1.1		6949207,6949415,6949787,6950123,6950916,6951510,6951898,6952355,6953009,6953645,6954164,6954481,6954956,6955385	6949331,6949568,6949864,6950413,6951020,6951587,6952078,6952404,6953092,6953845,6954202,6954655,6955065,6956448	ts-lethal mutant was isolated (PMID 29743196)
chr6	6956451	6960026	6956918	6959825	-	SRR1	Cre06.g296300.t1.1		6959773,6959477,6959217,6958879,6958104,6957741,6957359,6956451	6960026,6959539,6959373,6958938,6958609,6957925,6957524,6957166	Scavenger receptor cysteine-rich protein; related to SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr6	6956451	6960036	6956918	6959825	-	SRR1	Cre06.g296300.t2.1		6959773,6959477,6959217,6958879,6958104,6957741,6957359,6956451	6960036,6959536,6959373,6958938,6958609,6957925,6957524,6957166	Scavenger receptor cysteine-rich protein; related to SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr6	6960187	6966058	6960759	6965610	+	ULP1	Cre06.g296350.t1.1		6960187,6961886,6962198,6964003,6964621,6965164,6965550	6961602,6961999,6963702,6964126,6964896,6965253,6966058	possibly a SUMO protease
chr6	6966071	6971706	6966744	6971605	-	Cre06.g296400.t1.2	Cre06.g296400.t1.2		6971346,6970841,6969937,6969488,6968902,6968041,6967598,6967338,6967086,6966071	6971706,6970908,6970063,6969636,6969069,6968223,6967705,6967403,6967148,6966843	
chr6	6973541	6979236	6974533	6979058	-	Cre06.g296450.t1.1	Cre06.g296450.t1.1		6978844,6978008,6977550,6977174,6976481,6976141,6975728,6975049,6973541	6979236,6978049,6977603,6977224,6976968,6976296,6976054,6975328,6974533	
chr6	6973541	6979356	6974533	6979058	-	Cre06.g296450.t2.1	Cre06.g296450.t2.1		6978844,6978008,6977550,6977174,6976481,6976141,6975728,6975049,6973541	6979356,6978049,6977570,6977224,6976968,6976296,6976054,6975328,6974533	
chr6	6973541	6979356	6974533	6979058	-	Cre06.g296450.t3.1	Cre06.g296450.t3.1		6978844,6978008,6977550,6977174,6976481,6976141,6975728,6975199,6973541	6979356,6978049,6977570,6977224,6976968,6976296,6976054,6975328,6974533	
chr6	6979707	6985030	6979975	6984668	+	Cre06.g296500.t1.2	Cre06.g296500.t1.2		6979707,6981630,6982092,6982359,6982768,6983284,6983517,6983738,6984055,6984518	6980897,6981802,6982172,6982421,6982866,6983340,6983597,6983853,6984271,6985030	
chr6	6985217	6995458	6985491	6992626	+	FMO3	Cre06.g296550.t1.2		6985217,6985738,6986110,6986323,6986550,6986813,6987176,6987507,6988041,6988258,6988491,6988867	6985638,6985810,6986144,6986364,6986618,6986893,6987241,6987845,6988130,6988309,6988705,6995458	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; more closely related to bacterial than to plant homologues; linked to FMO6 and FMO7
chr6	6995530	6996896	6996114	6996763	-	RFS1	Cre06.g296600.t1.2		6995530	6996896	More similar to bacterial than to fungal homologues, in contrast to other riboflavin biosynthesis genes which are similar to the genes of spermatophyta
chr6	6997726	6998636	6998078	6998575	-	HYDG	Cre06.g296650.t1.2		6998515,6998317,6997726	6998636,6998427,6998201	Related to Thiazole biosynthesis protein thiH/O. Pfam motif found in thiamin and biotin biosynthesis genes. Radical SAM protein required for the assembly of an active [Fe]-hydrogenase [PMID: 15082711]
chr6	6998683	7003289	6999882	7003155	-	HYDG1	Cre06.g296700.t1.2		7002952,7002806,7002558,7002279,7001926,7001379,7000938,7000559,7000201,6998683	7003289,7002893,7002707,7002363,7002110,7001675,7001158,7000726,7000339,7000050	Related to Thiazole biosynthesis protein thiH/O. Pfam motif found in thiamin and biotin biosynthesis genes. Radical SAM protein required for the assembly of an active [Fe]-hydrogenase [PMID: 15082711]
chr6	7003406	7012157	7003942	7011462	+	HYDEF1	Cre06.g296750.t1.2		7003406,7004415,7004678,7005022,7005425,7005953,7006265,7006615,7007025,7007508,7008158,7008384,7008782,7009212,7009751,7010139,7010513,7010755,7010997,7011276	7004260,7004503,7004746,7005139,7005666,7006073,7006373,7006793,7007330,7008015,7008243,7008550,7008956,7009439,7009921,7010291,7010593,7010821,7011079,7012157	Iron hydrogenase assembly protein, contains domains homologous to prokaryotic HydE and HydF; radical SAM domain present in N-terminal region. [PMID: 15082711]
chr6	7012486	7015811	7012821	7015499	+	Cre06.g296800.t1.1	Cre06.g296800.t1.1		7012486,7013072,7014037,7014674,7015318	7012911,7013770,7014525,7014747,7015811	
chr6	7015980	7029205	7017015	7029099	-	FAP81	Cre06.g296850.t1.2		7028925,7028639,7028365,7027722,7027303,7027012,7026662,7026064,7025592,7025209,7024501,7023592,7023082,7020801,7020289,7019747,7019234,7018571,7018220,7015980	7029205,7028744,7028477,7027829,7027484,7027138,7026761,7026350,7025753,7025328,7024700,7024095,7023383,7022908,7020423,7019939,7019505,7018948,7018361,7017950	Similar to DLEC1 deleted in lung and esophageal cancer 1
chr6	7029876	7038638	7030668	7036912	+	Cre06.g296900.t1.2	Cre06.g296900.t1.2		7029876,7030855,7031311,7032660,7034673,7034988	7030695,7031034,7032045,7034519,7034797,7038638	
chr6	7039650	7040985	7040201	7040950	-	Cre06.g296912.t1.1	Cre06.g296912.t1.1		7040930,7039650	7040985,7040859	
chr6	7041346	7044707	7041945	7042494	+	Cre06.g296924.t1.1	Cre06.g296924.t1.1		7041346,7042428	7042098,7044707	
chr6	7045019	7046605	7045421	7046516	-	Cre06.g296936.t1.1	Cre06.g296936.t1.1		7046484,7045681,7045019	7046605,7046062,7045565	
chr6	7047200	7059775	7047588	7059467	-	Cre06.g296950.t1.1	Cre06.g296950.t1.1		7059140,7058651,7058398,7057986,7057361,7056928,7055350,7054528,7047200	7059775,7058819,7058448,7058090,7057509,7057041,7056351,7055062,7054175	null-allele mutant was isolated (PMID 29743196)
chr6	7059840	7068873	7060277	7068734	-	Cre06.g296983.t1.1	Cre06.g296983.t1.1		7068662,7068464,7067662,7067192,7066793,7066194,7065659,7065182,7064737,7064237,7063430,7062953,7062211,7061592,7061191,7060745,7059840	7068873,7068559,7067766,7067308,7066873,7066368,7065930,7065346,7064811,7064335,7063538,7063095,7062307,7061746,7061324,7060922,7060457	
chr6	7068999	7082675	7069638	7082484	-	Cre06.g297016.t1.1	Cre06.g297016.t1.1		7081047,7080535,7080007,7079225,7078898,7078502,7078209,7077989,7077412,7076880,7076086,7074959,7074663,7074234,7073715,7073272,7072774,7072490,7072119,7071761,7070967,7070669,7070345,7068999	7082675,7080710,7080169,7079272,7078989,7078571,7078283,7078022,7077707,7076950,7076196,7075110,7074713,7074391,7073808,7073377,7072891,7072541,7072222,7071907,7071008,7070728,7070444,7069898	
chr6	7082796	7084487	7083043	7083242	+	Cre06.g297049.t1.1	Cre06.g297049.t1.1		7082796	7084487	
chr6	7084490	7111895	7086739	7111505	-	Cre06.g297082.t1.1	Cre06.g297082.t1.1		7111253,7110573,7109980,7109387,7108720,7108206,7107115,7106590,7106201,7105762,7104931,7102511,7102053,7101751,7101287,7100143,7099699,7099053,7097057,7095235,7094627,7094012,7093434,7092959,7092482,7091370,7088795,7088057,7087597,7084490	7111895,7110859,7110250,7109537,7109150,7108381,7107593,7106660,7106221,7105848,7105009,7104659,7102320,7101798,7101378,7101025,7099908,7099112,7097116,7096634,7094876,7094229,7093629,7093124,7092537,7091913,7090412,7088581,7087762,7087330	
chr6	7084490	7098675	7086739	7098418	-	Cre06.g297082.t2.1	Cre06.g297082.t2.1		7098409,7097703,7097057,7095235,7094627,7094012,7093434,7092959,7092482,7091370,7088795,7088057,7087597,7084490	7098675,7097753,7097116,7096634,7094876,7094229,7093629,7093124,7092537,7091913,7090412,7088581,7087762,7087330	
chr6	7112920	7121645	7114206	7120932	-	RWP9	Cre06.g297150.t1.1		7121319,7117341,7116065,7115067,7114624,7112920	7121645,7121133,7117108,7115774,7114779,7114413	putative RWP-RK domain transcription factor [PMID: 15785851]
chr6	7122136	7126075	7122874	7125710	-	FAP108	Cre06.g297200.t1.2		7125554,7125245,7124653,7123792,7123385,7122136	7126075,7125340,7124817,7124472,7123492,7123009	Flagellar Associated Protein, found in the flagellar proteome
chr6	7126130	7127605	7126217	7127574	-	Cre06.g297250.t1.1	Cre06.g297250.t1.1		7127352,7126651,7126130	7127605,7127186,7126314	
chr6	7126520	7127605	7126556	7127574	-	Cre06.g297250.t2.1	Cre06.g297250.t2.1		7127352,7126520	7127605,7127186	
chr6	7127706	7133665	7128075	7133611	+	Cre06.g297300.t1.1	Cre06.g297300.t1.1		7127706,7128067,7128448,7128691,7129676,7130086,7131351,7131917,7132705,7133209	7127960,7128145,7128530,7129209,7129828,7130598,7131497,7132039,7132806,7133665	May contain additional coding sequence in intronic N-island PMID: 27175017
chr6	7133691	7137005	7134016	7136950	-	Cre06.g297400.t1.1	Cre06.g297400.t1.1		7136800,7136627,7136451,7136122,7135630,7135322,7134938,7134440,7133691	7137005,7136662,7136504,7136179,7135826,7135426,7135083,7134575,7134223	
chr6	7137080	7142085	7137629	7141968	-	Cre06.g297450.t1.2	Cre06.g297450.t1.2		7141908,7141802,7141277,7140835,7140346,7139887,7139433,7139126,7137080	7142085,7141840,7141368,7140953,7140500,7139943,7139568,7139238,7138811	
chr6	7142140	7144135	7143032	7144045	-	Cre06.g297500.t1.1	Cre06.g297500.t1.1		7143714,7142140	7144135,7143361	
chr6	7144190	7147415	7144824	7146903	-	Cre06.g297516.t1.2	Cre06.g297516.t1.2		7145508,7144190	7147415,7145310	
chr6	7147470	7150415	7147923	7150309	-	Cre06.g297550.t1.2	Cre06.g297550.t1.2		7150036,7149703,7148962,7148435,7147470	7150415,7149915,7149454,7148606,7148020	
chr6	7150470	7152255	7150853	7151950	-	Cre06.g297600.t1.2	Cre06.g297600.t1.2		7151879,7151636,7151368,7151109,7150470	7152255,7151813,7151485,7151159,7150960	
chr6	7152416	7160356	7153050	7160048	+	Cre06.g297650.t1.2	Cre06.g297650.t1.2		7152416,7153000,7153590,7154051,7154229,7154660,7155031,7156713,7157256,7157592,7158020,7158409,7158847,7159282	7152603,7153269,7153718,7154095,7154305,7154762,7156590,7157016,7157425,7157690,7158220,7158497,7159029,7160356	
chr6	7152416	7160647	7153050	7160048	+	Cre06.g297650.t2.1	Cre06.g297650.t2.1		7152416,7153000,7153590,7154051,7154229,7154660,7155031,7156713,7157256,7157592,7158020,7158409,7158847,7159282	7152603,7153269,7153718,7154095,7154305,7154762,7156590,7157016,7157425,7157690,7158220,7158497,7159029,7160647	
chr6	7152416	7160227	7153050	7160048	+	Cre06.g297650.t3.1	Cre06.g297650.t3.1		7152416,7153000,7153590,7154051,7154229,7154660,7155031,7156713,7157256,7157592,7158020,7158409,7158847,7159282	7152603,7153269,7153718,7154095,7154305,7154762,7156590,7157016,7157425,7157690,7158220,7158497,7159029,7160227	
chr6	7160241	7166615	7160964	7166492	-	Cre06.g297700.t1.1	Cre06.g297700.t1.1		7166458,7166184,7166038,7165838,7165434,7165037,7164664,7163328,7162893,7160241	7166615,7166395,7166110,7165866,7165628,7165264,7164792,7164524,7163198,7162782	
chr6	7167879	7171745	7168147	7171507	-	Cre06.g297750.t1.2	Cre06.g297750.t1.2		7171476,7171256,7170914,7170376,7170091,7169489,7169119,7168637,7167879	7171745,7171398,7171060,7170710,7170178,7169827,7169232,7168960,7168258	
chr6	7172241	7182290	7172821	7182026	-	Cre06.g297800.t1.2	Cre06.g297800.t1.2		7180002,7179061,7176040,7175626,7175345,7174975,7173318,7172241	7182290,7179887,7178909,7175820,7175466,7175230,7174824,7173120	null-allele mutant was isolated (PMID 29743196)
chr6	7182401	7211486	7182548	7210835	+	DHC12	Cre06.g297850.t1.1		7182401,7182756,7183557,7184699,7185720,7187323,7187790,7188160,7188535,7188836,7189121,7189555,7189874,7190204,7190542,7190791,7191083,7191568,7192080,7192477,7192811,7193128,7193449,7193802,7194314,7194827,7195192,7195783,7196144,7196502,7196785,7197101,7197491,7197813,7198383,7198759,7199013,7199315,7200216,7200566,7200990,7201312,7201683,7201966,7202408,7202802,7203133,7203397,7203934,7204422,7204712,7205189,7205446,7205868,7206158,7207796,7208382	7182641,7183349,7184544,7185546,7187168,7187658,7187953,7188343,7188693,7188964,7189361,7189711,7189995,7190404,7190652,7190921,7191318,7191964,7192289,7192617,7192906,7193293,7193621,7194095,7194649,7194913,7195604,7195999,7196323,7196645,7196918,7197345,7197688,7198260,7198515,7198878,7199153,7200010,7200388,7200753,7201171,7201505,7201806,7202236,7202663,7202961,7203246,7203660,7204244,7204574,7204943,7205260,7205671,7205992,7207611,7208184,7211486	Putative dynein heavy chain-like ATPase; fragments previously termed PCR4 or DHC1a
chr6	7211615	7214970	7212519	7214865	-	Cre06.g297900.t1.1	Cre06.g297900.t1.1		7214844,7214629,7214360,7214132,7213885,7213682,7213322,7211615	7214970,7214765,7214456,7214248,7213994,7213788,7213515,7213059	
chr6	7215025	7219400	7215306	7219279	-	Cre06.g297904.t1.2	Cre06.g297904.t1.2		7219227,7219132,7218509,7218269,7218087,7217792,7216689,7216424,7215983,7215718,7215025	7219400,7219143,7219048,7218333,7218181,7217939,7217595,7216560,7216147,7215798,7215561	
chr6	7219447	7220860	7220034	7220824	-	Cre06.g297950.t1.2	Cre06.g297950.t1.2		7219447	7220860	
chr6	7219447	7221450	7220034	7220824	-	Cre06.g297950.t2.1	Cre06.g297950.t2.1		7221278,7219447	7221450,7220955	
chr6	7221505	7224800	7222058	7224391	-	Cre06.g298000.t1.1	Cre06.g298000.t1.1		7224307,7224078,7223866,7223419,7222999,7222547,7221505	7224800,7224226,7223929,7223643,7223249,7222766,7222304	
chr6	7226721	7231462	7227040	7230312	+	Cre06.g298050.t1.2	Cre06.g298050.t1.2		7226721,7227323,7228444,7229550	7227143,7228173,7228491,7231462	
chr6	7226721	7228722	7227040	7228576	+	Cre06.g298050.t2.1	Cre06.g298050.t2.1		7226721,7227323,7228444	7227143,7228173,7228722	
chr6	7233071	7234465	7233240	7234000	+	SUI1A	Cre06.g298100.t1.2		7233071,7233671,7233985	7233416,7233839,7234465	putative SUI1 translation initiation protein, initiation factor 1 (eIF-1)
chr6	7235040	7241122	7235127	7240546	+	Cre06.g298150.t1.2	Cre06.g298150.t1.2		7235040,7235582,7235868,7236380,7236743,7237171,7237407,7238137,7238570,7238967,7239389,7240012	7235481,7235715,7236233,7236504,7237044,7237254,7237895,7238321,7238708,7239241,7239719,7241122	null-allele passenger mutation was isolated (PMID 29743196)
chr6	7241125	7243900	7241374	7243605	-	Cre06.g298200.t1.1	Cre06.g298200.t1.1		7242036,7241125	7243900,7241806	
chr6	7243955	7247050	7244081	7246903	-	Cre06.g298225.t1.1	Cre06.g298225.t1.1		7245583,7245295,7245028,7244780,7244537,7243955	7247050,7245421,7245146,7244872,7244594,7244299	
chr6	7243955	7245200	7244081	7245157	-	Cre06.g298225.t2.1	Cre06.g298225.t2.1		7245028,7244780,7244537,7243955	7245200,7244872,7244594,7244299	
chr6	7247471	7250522	7247582	7250295	+	Cre06.g298251.t1.1	Cre06.g298251.t1.1		7247471,7248899,7249417,7249698,7250100	7248683,7249253,7249537,7249782,7250522	
chr6	7250555	7258800	7251691	7258593	-	MRL1	Cre06.g298300.t1.1		7258522,7257889,7257570,7257035,7256575,7256076,7255590,7254859,7254297,7253480,7250555	7258800,7258389,7257802,7257194,7256836,7256351,7255699,7255078,7254655,7254056,7253230	PentratricoPeptide Repeat protein, stabilizes rbcL mRNA
chr6	7258880	7260000	7259180	7259349	-	Cre06.g298326.t1.1	Cre06.g298326.t1.1		7258880	7260000	
chr6	7260161	7263974	7260242	7263691	+	FAP224	Cre06.g298350.t1.2		7260161,7260330,7260431,7260784,7261027,7262122,7262425,7262765,7263108,7263490	7260247,7260356,7260707,7260851,7261127,7262243,7262556,7262941,7263275,7263974	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome; may the target of a miRNA directing cleavage in the extended 3' UTR, after the main polyadenylation site, in a region that appears to be deleted in strain S1D2
chr6	7264021	7266500	7264115	7265025	+	Cre06.g298400.t1.2	Cre06.g298400.t1.2		7264021	7266500	
chr6	7266515	7272750	7267237	7272366	-	Cre06.g298450.t1.2	Cre06.g298450.t1.2		7272165,7271301,7270096,7269735,7269168,7268916,7268210,7267902,7266515	7272750,7271968,7271080,7269869,7269479,7268975,7268698,7268044,7267700	
chr6	7272901	7280922	7273094	7279405	+	Cre06.g298500.t1.1	Cre06.g298500.t1.1		7272901,7273428,7273807,7274141,7274509,7274854,7275344,7275788,7276107,7276371,7276935,7277229,7277605,7277976,7278365,7278808	7273172,7273499,7273898,7274255,7274557,7275050,7275606,7275977,7276205,7276778,7277048,7277354,7277804,7278153,7278646,7280922	
chr6	7281191	7290170	7283290	7290058	-	FMO7	Cre06.g298550.t1.1		7289899,7289776,7289650,7289296,7289135,7288908,7288556,7288164,7287786,7287356,7286982,7283540,7281191	7290170,7289823,7289674,7289501,7289161,7288973,7288726,7288331,7287968,7287529,7287185,7286815,7283398	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; more closely related to bacterial than to plant homologues; linked to FMO6 and FMO3
chr6	7281191	7290140	7283290	7290040	-	FMO7	Cre06.g298550.t2.1		7289899,7289776,7289650,7289296,7289135,7288908,7288556,7288164,7287786,7287356,7286982,7283540,7281191	7290140,7289823,7289674,7289501,7289161,7288973,7288726,7288331,7287968,7287529,7287185,7286815,7283398	Use NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; more closely related to bacterial than to plant homologues; linked to FMO6 and FMO3
chr6	7290189	7294095	7290621	7294050	-	Cre06.g298600.t1.2	Cre06.g298600.t1.2		7293801,7293143,7292732,7291792,7291369,7291145,7290189	7294095,7293240,7292968,7292507,7291595,7291215,7290997	
chr6	7294201	7298298	7294366	7297933	+	EIF4A	Cre06.g298650.t1.2		7294201,7294574,7294765,7294950,7295842,7296249,7296795,7297009,7297357,7297846	7294374,7294701,7294849,7295056,7296074,7296485,7296863,7297167,7297638,7298298	DEAD/DEAH box DNA/RNA helicase
chr6	7298671	7302569	7298793	7301679	+	Cre06.g298700.t1.2	Cre06.g298700.t1.2		7298671,7299051,7299176,7299360,7299534,7300771,7301166,7301558	7298940,7299095,7299252,7299418,7299610,7300844,7301282,7302569	
chr6	7302691	7308284	7303125	7306889	+	AOT4	Cre06.g298750.t1.2		7302691,7303643,7303919,7304233,7304583,7304911,7305249,7305629,7305874,7306176,7306397,7306683	7303450,7303723,7303991,7304379,7304677,7305078,7305375,7305725,7305981,7306226,7306472,7308284	belongs to AAAP family of amino acid/auxin permeases; most similar to plant and fungal relatives
chr6	7310641	7319383	7310819	7317603	+	LTH5	Cre06.g298800.t1.1		7310641,7311159,7311529,7312009,7312488,7313292,7313843,7317093	7310942,7311272,7311840,7312197,7312604,7313431,7316789,7319383	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr6	7313951	7319383	7314005	7317603	+	LTH5	Cre06.g298800.t3.1		7313951,7317093	7316789,7319383	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr6	7310641	7312785	7310819	7312700	+	LTH5	Cre06.g298800.t2.1		7310641,7311159,7311529,7312009,7312488,7312685	7310942,7311272,7311840,7312197,7312604,7312785	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr6	7312792	7313840	7313200	7313414	-	Cre06.g298802.t1.1	Cre06.g298802.t1.1		7312792	7313840	
chr6	7319551	7325842	7319805	7325114	+	LTH6	Cre06.g298850.t1.2		7319551,7319940,7320191,7320447,7320928,7321307,7321738,7322053,7324568	7319856,7319996,7320304,7320758,7321116,7321423,7321877,7324429,7325842	belongs to a family of 7 highly similar genes (5 adjacent on chr10), conserved in Volvox
chr6	7334122	7337027	7335403	7336953	-	Cre06.g298880.t1.1	Cre06.g298880.t1.1		7336937,7334122	7337027,7336848	null-allele mutant was isolated (PMID 29743196)
chr6	7337082	7340327	7339066	7339534	-	Cre06.g298911.t1.2	Cre06.g298911.t1.2		7339452,7337082	7340327,7339263	
chr6	7345568	7349485	7345794	7349110	+	Cre06.g298950.t1.2	Cre06.g298950.t1.2		7345568,7346309,7346763,7347256,7347688,7348036,7348568	7345832,7346468,7346926,7347346,7347818,7348238,7349485	
chr6	7349967	7351178	7350468	7351151	-	PRPL21	Cre06.g299000.t1.2		7350661,7349967	7351178,7350518	imported to chloroplast; Chloroplast large ribosomal subunit protein L21
chr6	7351329	7354799	7351623	7354167	+	DGTT3	Cre06.g299050.t1.2		7351329,7351903,7352229,7352597,7352778,7352972,7353222,7353468,7353999	7351738,7351974,7352400,7352647,7352803,7353080,7353312,7353704,7354799	
chr6	7354958	7361719	7355418	7360341	+	Cre06.g299100.t1.2	Cre06.g299100.t1.2		7354958,7355584,7355872,7356221,7356520,7357072,7357579,7357967,7358421,7358789,7359204,7359427,7359725	7355445,7355664,7355937,7356295,7356641,7357195,7357740,7358053,7358527,7358954,7359267,7359520,7361719	
chr6	7361752	7368597	7362616	7368569	-	PHC26	Cre06.g299150.t1.1		7368501,7368170,7367713,7367458,7366740,7365924,7365741,7365427,7364794,7364498,7364096,7363809,7363443,7363033,7361752	7368597,7368227,7367763,7367550,7367176,7366023,7365793,7365484,7365016,7364600,7364234,7363857,7363550,7363144,7362683	belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain
chr6	7369788	7374929	7369953	7374639	+	Cre06.g299200.t1.1	Cre06.g299200.t1.1		7369788,7370377,7371438,7371821,7372126,7372707,7373022,7373230,7373474,7373694,7373971,7374155	7370108,7371144,7371639,7371989,7372570,7372910,7373146,7373375,7373596,7373779,7374000,7374929	
chr6	7375238	7378504	7375443	7377786	+	Cre06.g299250.t1.1	Cre06.g299250.t1.1		7375238,7375743,7376062,7376292,7377699	7375494,7375877,7376151,7377581,7378504	
chr6	7378512	7383047	7379114	7382953	-	TUG1	Cre06.g299300.t1.2		7382881,7382728,7382555,7382191,7381559,7380905,7380400,7380042,7379734,7379328,7378512	7383047,7382784,7382640,7382342,7381700,7381134,7380584,7380206,7379892,7379459,7379141	Gamma tubulin [gi:1098639][gi:8928436] [PMID: 10223635]
chr6	7383178	7388430	7383311	7387576	+	FBB15	Cre06.g299350.t1.1		7383178,7383574,7383944,7384252,7384603,7384847,7385453,7385906,7386862,7387251,7387576	7383500,7383689,7384021,7384352,7384655,7385081,7385566,7386586,7386993,7387319,7388430	Conserved protein found in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr6	7388432	7392567	7388677	7392488	-	Cre06.g299450.t1.2	Cre06.g299450.t1.2		7392349,7392152,7391752,7391163,7390832,7389658,7388432	7392567,7392202,7391906,7391240,7390894,7390601,7389446	
chr6	7393738	7395469	7393854	7394587	+	Cre06.g299476.t1.1	Cre06.g299476.t1.1		7393738	7395469	
chr6	7395543	7401797	7396243	7401669	-	Cre06.g299500.t1.2	Cre06.g299500.t1.2		7401648,7400819,7400390,7400092,7399459,7398965,7398549,7398087,7397897,7397669,7397028,7396620,7395543	7401797,7400966,7400529,7400190,7399639,7399152,7398615,7398169,7397941,7397719,7397282,7396746,7396431	
chr6	7401938	7404379	7402278	7403934	+	Cre06.g299550.t1.2	Cre06.g299550.t1.2		7401938,7402842,7403248,7403561,7403829	7402521,7402949,7403313,7403623,7404379	
chr6	7404650	7408397	7405210	7408100	-	ZRT4	Cre06.g299600.t1.2		7408006,7407818,7407468,7406856,7406406,7405987,7405531,7404650	7408397,7407922,7407595,7407275,7406540,7406096,7405690,7405300	PMID: 15710683; PMID: 16766055
chr6	7408518	7413148	7408681	7412486	+	CLPR6	Cre06.g299650.t1.2		7408518,7408909,7409080,7409231,7409675,7410892,7411543,7411953,7412348	7408809,7408996,7409151,7409315,7409784,7410958,7411607,7412051,7413148	ortholog of plant ClpP6
chr6	7413232	7416077	7413890	7415849	-	SOUL1	Cre06.g299700.t1.2		7415692,7415321,7414948,7414628,7414323,7413232	7416077,7415385,7414992,7414672,7414379,7414175	
chr6	7416438	7418049	7416534	7417076	+	Cre06.g299750.t1.2	Cre06.g299750.t1.2		7416438,7416654,7416794,7417020	7416558,7416714,7416880,7418049	Yos1-related protein involved in ER-Golgi transport
chr6	7418052	7425437	7419207	7425315	-	LCL1	Cre06.g299800.t1.2		7425183,7424982,7424635,7424309,7423849,7423286,7422875,7422584,7421814,7421394,7420983,7420628,7420135,7419758,7418052	7425437,7425103,7424718,7424378,7424061,7423562,7422921,7422706,7422257,7421558,7421178,7420707,7420236,7419876,7419388	
chr6	7425578	7429459	7425715	7428907	+	HLM10	Cre06.g299850.t1.1		7425578,7426076,7426456,7426799,7427247,7427733,7428281,7428646	7425923,7426178,7426562,7426900,7427506,7428083,7428499,7429459	
chr6	7432408	7437279	7433083	7436505	+	Cre06.g299900.t1.1	Cre06.g299900.t1.1		7432408,7434003,7434276,7434597	7433256,7434082,7434340,7437279	
chr6	7437392	7438615	7438023	7438279	-	Cre06.g299926.t1.1	Cre06.g299926.t1.1		7437392	7438615	
chr6	7438738	7445299	7439101	7442994	+	Cre06.g299950.t1.1	Cre06.g299950.t1.1		7438738,7439007,7439434,7439612,7439780,7439966,7440264,7440771	7438905,7439137,7439516,7439651,7439832,7440025,7440666,7445299	
chr6	7445801	7450687	7446318	7450660	-	Cre06.g300001.t1.1	Cre06.g300001.t1.1		7449439,7447856,7447609,7447276,7446887,7446686,7445801	7450687,7449211,7447662,7447419,7446981,7446729,7446446	
chr6	7450735	7457337	7452193	7457027	-	OPR27	Cre06.g300050.t1.1		7456916,7456745,7456107,7455729,7455282,7454957,7454569,7454027,7453495,7453012,7452615,7450735	7457337,7456822,7456568,7455845,7455428,7455060,7454680,7454328,7453669,7453239,7452761,7452346	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr6	7457438	7460544	7457460	7459890	+	PIGL	Cre06.g300100.t1.2		7457438,7457752,7457957,7458153,7458423,7458647,7458984,7459467,7459890	7457674,7457816,7458001,7458230,7458490,7458734,7459246,7459630,7460544	
chr6	7460695	7465017	7461021	7464969	-	Cre06.g300139.t1.2	Cre06.g300139.t1.2		7464770,7461866,7461634,7460695	7465017,7461889,7461675,7461299	
chr6	7463484	7465017	7464653	7464969	-	Cre06.g300139.t2.1	Cre06.g300139.t2.1		7463484	7465017	
chr6	7463484	7465017	7464337	7464969	-	Cre06.g300139.t3.1	Cre06.g300139.t3.1		7464770,7463484	7465017,7464348	
chr6	7465581	7467557	7466500	7466900	-	Cre06.g300144.t1.1	Cre06.g300144.t1.1		7467545,7467407,7465581	7467557,7467435,7466968	
chr6	7467612	7470797	7467698	7470757	-	Cre06.g300150.t1.1	Cre06.g300150.t1.1		7470558,7470102,7469817,7469430,7468305,7467961,7467612	7470797,7470143,7469837,7469489,7468792,7468116,7467872	
chr6	7471322	7474427	7471868	7474310	-	Cre06.g300200.t1.2	Cre06.g300200.t1.2		7474261,7473810,7473460,7472361,7471322	7474427,7474126,7473570,7473112,7471938	
chr6	7474528	7484379	7474749	7483841	+	TTL10	Cre06.g300250.t1.1		7474528,7474998,7475415,7476420,7477274,7478134,7480471,7480959,7481361,7481870,7482491,7482749,7483055,7483542	7474847,7475109,7476257,7477115,7477946,7480190,7480608,7481074,7481474,7481997,7482549,7482895,7483217,7484379	
chr6	7485059	7487927	7485822	7487789	-	Cre06.g300300.t1.1	Cre06.g300300.t1.1		7487701,7487239,7486494,7485059	7487927,7487280,7487000,7486298	
chr6	7488316	7490267	7489208	7489521	-	Cre06.g300326.t1.1	Cre06.g300326.t1.1		7490254,7490130,7488316	7490267,7490158,7489689	
chr6	7490322	7494337	7490407	7494277	-	Cre06.g300350.t2.1	Cre06.g300350.t2.1		7494081,7493882,7492798,7492504,7492117,7491021,7490678,7490322	7494337,7493923,7492842,7492524,7492176,7491508,7490833,7490581	
chr6	7488316	7494337	7490407	7494277	-	Cre06.g300350.t1.1	Cre06.g300350.t1.1		7494081,7493882,7492798,7492504,7492117,7491021,7490678,7488316	7494337,7493923,7492842,7492524,7492176,7491508,7490833,7490581	
chr6	7494478	7496952	7494810	7496448	+	Cre06.g300400.t1.1	Cre06.g300400.t1.1		7494478,7495271,7495502,7495823,7496006	7494996,7495393,7495587,7495852,7496952	
chr6	7497048	7501689	7497098	7501373	+	Cre06.g300450.t1.1	Cre06.g300450.t1.1		7497048,7497828,7498209,7498599,7499422,7499747,7499965,7500213,7500443,7500759,7500931	7497679,7498041,7498413,7499229,7499586,7499871,7500110,7500335,7500528,7500788,7501689	
chr6	7501717	7512967	7502838	7512533	-	Cre06.g300500.t1.1	Cre06.g300500.t1.1		7512107,7511681,7511337,7510991,7510407,7510081,7509745,7509337,7509021,7508531,7508141,7507867,7507110,7506824,7506536,7505959,7505251,7504691,7504332,7503987,7503639,7503287,7501717	7512967,7511954,7511402,7511146,7510787,7510292,7509940,7509518,7509170,7508659,7508266,7507934,7507662,7506967,7506727,7506122,7505746,7504983,7504447,7504132,7503753,7503423,7503027	Most similar to the adenylyl cyclases of Paramecium, Tetrahymena, and Plasmodium. Weber et al. 2004 (Cellular Signalling 16:115-125) suggested that these proteins are potassium channel/cyclase fusion proteins and that they localize to the cilia. The similarity between these proteins and ADCY1 is greatest in the C-terminal region: the catalytic domain and the putative TPR (tetratricopeptide) domain that may be implicated in protein-protein interaction. To a lesser degree, the six transmembrane segment and the pore" regions of the ciliate proteins are similar to equivalent regions of the Chlamydomonas protein.
chr6	7513707	7523397	7514443	7523101	-	Cre06.g300550.t1.2	Cre06.g300550.t1.2		7522193,7521154,7520719,7520307,7519782,7519441,7519175,7518786,7518320,7517934,7516400,7515882,7515444,7515089,7513707	7523397,7521261,7520826,7520466,7519897,7519528,7519227,7518924,7518374,7518064,7516519,7516072,7515672,7515187,7514806	
chr6	7524599	7532609	7525947	7532422	-	Cre06.g300600.t1.1	Cre06.g300600.t1.1		7532250,7531735,7531270,7531094,7530747,7524599	7532609,7531868,7531392,7531140,7530975,7530579	
chr6	7532710	7540112	7532801	7539440	+	Cre06.g300650.t1.2	Cre06.g300650.t1.2		7532710,7533185,7533698,7534018,7534654,7535148,7535526,7535775,7536129,7536501,7537037,7537672,7538110,7538443,7538965,7539332	7532858,7533468,7533809,7534278,7534887,7535236,7535628,7535969,7536191,7536686,7537149,7537885,7538200,7538633,7539108,7540112	
chr6	7540369	7543056	7540806	7542974	-	Cre06.g300700.t1.1	Cre06.g300700.t1.1		7542640,7542081,7541785,7541162,7540369	7543056,7542248,7541852,7541341,7540872	This is an NAD dependent epimerase/dehydratase (see SNE series)
chr6	7543180	7554940	7543375	7554504	+	Cre06.g300750.t1.1	Cre06.g300750.t1.1		7543180,7543844,7544311,7544605,7545179,7546428,7546731,7547219,7547699,7548118,7548649,7548988,7549322,7549692,7550258,7550666,7551655,7552225,7552568,7552995,7553295,7553717,7554177	7543723,7544158,7544424,7544886,7546156,7546534,7546941,7547464,7547801,7548292,7548819,7549095,7549505,7549967,7550477,7550790,7551990,7552368,7552738,7553151,7553497,7553950,7554940	
chr6	7555213	7557056	7555247	7556270	+	PRPL27	Cre06.g300800.t1.2		7555213,7555698,7556099	7555463,7555796,7557056	imported to chloroplast; Chloroplast large ribosomal subunit protein L27
chr6	7557054	7567159	7557406	7566973	-	Cre06.g300850.t1.1	Cre06.g300850.t1.1		7566850,7566344,7566013,7565615,7565264,7564889,7563642,7563390,7562618,7562141,7561669,7560275,7559871,7559523,7557054	7567159,7566418,7566099,7565818,7565370,7565048,7564619,7563452,7563175,7562410,7561946,7561488,7560041,7559629,7559296	
chr6	7567243	7572829	7567647	7572741	-	Cre06.g300900.t1.1	Cre06.g300900.t1.1		7572560,7572286,7571863,7571580,7571079,7570764,7570564,7570188,7569885,7569579,7568981,7568589,7568182,7567243	7572829,7572485,7571970,7571696,7571240,7570859,7570641,7570295,7570001,7569623,7569154,7568660,7568321,7567855	
chr6	7576410	7577806	7576879	7577096	+	Cre06.g300933.t1.1	Cre06.g300933.t1.1		7576410,7576718	7576614,7577806	
chr6	7578117	7580979	7578551	7580233	-	Cre06.g300966.t1.1	Cre06.g300966.t1.1		7579363,7578117	7580979,7578551	
chr6	7581140	7587502	7581317	7585602	+	Cre06.g301000.t1.2	Cre06.g301000.t1.2		7581140,7582164,7583327,7583665,7584375,7584643,7584871,7585108,7585422	7581978,7583142,7583477,7584211,7584441,7584703,7584937,7585181,7587502	
chr6	7588670	7592551	7589016	7591589	+	ARL13	Cre06.g301050.t1.2		7588670,7589673,7590925	7589016,7590679,7592551	Expressed Protein. ARF-like 13, a member of the ARF/Sar1 family of Ras-like GTPases. Conserved only in organisms with flagella (human orthologs - ARL13a and ARL13b), C. elegans ortholog specifically expressed in flagellated cells, hence a function in the flagellum/basal body can be inferred.
chr6	7592770	7598240	7593288	7596345	+	Cre06.g301100.t1.1	Cre06.g301100.t1.1		7592770,7593287,7594302,7594619,7595976	7593123,7594056,7594367,7595764,7598240	null-allele mutant was isolated (PMID 29743196)
chr6	7598244	7605079	7598916	7605010	-	Cre06.g301150.t1.1	Cre06.g301150.t1.1		7604845,7604665,7604513,7604213,7603843,7603546,7603345,7603105,7602826,7602456,7600699,7599369,7598244	7605079,7604742,7604589,7604392,7604038,7603686,7603449,7603211,7602958,7602650,7602282,7600495,7599181	
chr6	7605400	7611083	7605435	7609486	+	Cre06.g301201.t1.1	Cre06.g301201.t1.1		7605400,7605530,7606828,7609436	7605445,7606591,7607907,7611083	
chr6	7611800	7612711	7611952	7612175	+	Cre06.g301251.t1.1	Cre06.g301251.t1.1		7611800	7612711	
chr6	7622783	7624981	7622879	7624171	+	Cre06.g301300.t1.2	Cre06.g301300.t1.2		7622783,7623640	7623368,7624981	
chr6	7625860	7628801	7626606	7627943	+	Cre06.g301325.t1.1	Cre06.g301325.t1.1		7625860,7627943	7627676,7628801	
chr6	7628850	7635904	7630366	7633675	+	Cre06.g301350.t1.1	Cre06.g301350.t1.1		7628850,7629662,7630087,7630338,7630648,7631194,7632100	7629511,7629829,7630119,7630388,7631032,7631749,7635904	
chr6	7635944	7637389	7636281	7636619	-	Cre06.g301400.t1.1	Cre06.g301400.t1.1		7637123,7636607,7635944	7637389,7636810,7636536	
chr6	7637555	7643397	7637587	7642236	+	Cre06.g301450.t1.1	Cre06.g301450.t1.1		7637555,7638038,7638372,7638807,7639442,7639751,7640165,7640675,7640952,7641837	7637786,7638079,7638610,7639234,7639541,7640014,7640368,7640779,7641062,7643397	
chr6	7643404	7645429	7644554	7645302	-	Cre06.g301476.t1.1	Cre06.g301476.t1.1		7645292,7645134,7643404	7645429,7645158,7644702	
chr6	7647610	7653204	7647939	7652181	+	Cre06.g301500.t1.1	Cre06.g301500.t1.1		7647610,7648182,7648342,7648528,7648693,7649079,7649902,7650612	7647965,7648263,7648424,7648575,7648896,7649667,7650393,7653204	
chr6	7653214	7657179	7653565	7657151	-	MFT18	Cre06.g301550.t1.2		7657063,7656895,7656512,7656153,7655756,7655373,7654843,7654497,7654042,7653214	7657179,7656965,7656618,7656304,7655971,7655551,7654984,7654645,7654186,7653870	Similar to MFS-1 sugar transporter with Spinster-like transmembrane topology; null-allele passenger mutation was isolated (PMID 29743196)
chr6	7657391	7669069	7657687	7668915	-	MAN2	Cre06.g301600.t1.1		7668813,7668678,7668526,7668175,7667741,7666917,7666530,7666228,7665883,7665516,7665087,7664533,7664248,7663844,7663491,7662346,7661965,7661700,7661448,7661234,7659151,7658746,7657896,7657391	7669069,7668739,7668589,7668261,7667818,7667504,7666617,7666282,7665997,7665593,7665207,7664630,7664325,7663943,7663555,7663215,7662099,7661769,7661532,7661267,7661100,7658872,7658530,7657720	EDEM ortholog. It trims a mannose from Man8GlcNac2 glycans to generate Man7GlcNac2, an oligosaccharide signal on glycoproteins destined for ER-associated protein degradation, GH38 family
chr6	7669170	7675051	7669220	7674394	+	Cre06.g301650.t1.2	Cre06.g301650.t1.2		7669170,7669843,7670174,7670543,7670931,7671450,7671802,7672242,7672600,7672940,7673297,7674191	7669463,7669884,7670254,7670593,7671061,7671598,7671890,7672368,7672739,7673002,7673459,7675051	
chr6	7675120	7676715	7675352	7676118	+	Cre06.g301700.t1.2	Cre06.g301700.t1.2		7675120,7676118	7675666,7676715	
chr6	7676770	7678201	7676849	7677252	+	Cre06.g301725.t1.1	Cre06.g301725.t1.1		7676770,7677130	7676955,7678201	
chr6	7678550	7681421	7678653	7680645	+	Cre06.g301750.t1.2	Cre06.g301750.t1.2		7678550,7678955,7679507,7680327	7678778,7679231,7680112,7681421	
chr6	7681470	7685061	7681523	7685043	+	MFT19	Cre06.g301800.t1.1		7681470,7681608,7682049,7682466,7682728,7683278,7683690,7683994,7684467,7685043	7681546,7681838,7682211,7682596,7683090,7683525,7683898,7684103,7684532,7685061	Permease
chr6	7681470	7685061	7681523	7684467	+	MFT19	Cre06.g301800.t2.1		7681470,7681608,7682049,7682466,7682728,7683278,7683690,7683994,7684467	7681546,7681838,7682211,7682596,7683090,7683525,7683898,7684103,7685061	Permease
chr6	7685120	7689181	7685367	7689084	+	Cre06.g301802.t1.2	Cre06.g301802.t1.2		7685120,7685344,7686692,7687282,7688012,7688731,7689084	7685139,7686105,7687021,7687679,7688522,7688953,7689181	
chr6	7689350	7691791	7690263	7691315	+	PHC76	Cre06.g301806.t1.2		7689350,7689557,7690032,7690652,7691124	7689440,7689792,7690507,7690948,7691791	
chr6	7691794	7700739	7692311	7700631	-	Cre06.g301850.t1.1	Cre06.g301850.t1.1		7700541,7700370,7700017,7699801,7699435,7698998,7698585,7698323,7697881,7696654,7696191,7695886,7695667,7695312,7694901,7694617,7694380,7694005,7693648,7693290,7692949,7692648,7691794	7700739,7700447,7700079,7699872,7699644,7699255,7698860,7698421,7698222,7697742,7696327,7696021,7695714,7695497,7695083,7694724,7694489,7694185,7693873,7693505,7693055,7692761,7692506	
chr6	7700860	7714011	7701527	7712567	+	Cre06.g301900.t1.1	Cre06.g301900.t1.1		7700860,7701507,7702250,7703579,7704146,7704917,7705778,7708878,7711847,7712159	7701006,7701689,7702407,7703693,7704234,7705007,7708676,7711684,7711960,7714011	
chr6	7700860	7714011	7701527	7712567	+	Cre06.g301900.t2.1	Cre06.g301900.t2.1		7700860,7701507,7702250,7703579,7704146,7704917,7705778,7708878,7711850,7712159	7701006,7701689,7702407,7703693,7704234,7705007,7708676,7711684,7711960,7714011	
chr6	7714112	7725116	7715137	7724882	-	Cre06.g301951.t1.1	Cre06.g301951.t1.1		7724879,7724568,7724294,7723900,7723538,7723167,7722789,7721991,7721718,7721152,7720573,7719821,7719099,7718778,7718204,7717285,7715349,7714112	7725116,7724666,7724311,7724022,7723627,7723241,7722879,7722607,7721773,7721491,7720794,7720312,7719257,7718912,7718408,7717809,7716976,7715164	
chr6	7725171	7729296	7726134	7729050	-	MFP31	Cre06.g302000.t1.1		7728943,7728422,7728072,7727698,7727173,7726550,7725171	7729296,7728652,7728234,7727858,7727484,7727006,7726338	Permease
chr6	7725171	7729296	7726134	7729050	-	MFP31	Cre06.g302000.t2.1		7728943,7728422,7728072,7727698,7727173,7726550,7725171	7729296,7728652,7728234,7727858,7727481,7727006,7726338	Permease
chr6	7729446	7744866	7730161	7744617	-	GSL2	Cre06.g302050.t1.2		7744566,7744210,7743989,7743639,7743327,7741968,7741596,7741116,7740760,7740515,7740208,7739551,7739196,7738824,7738534,7737774,7737455,7736936,7736646,7736199,7734967,7734683,7734363,7733960,7733650,7733264,7732913,7732457,7729446	7744866,7744263,7744100,7743838,7743437,7743105,7741832,7741438,7740963,7740674,7740371,7739997,7739380,7739001,7738693,7738378,7737637,7737297,7736772,7736456,7736025,7734826,7734509,7734162,7733786,7733391,7733113,7732629,7732307	GT48 family 1,3-beta-D-glucan synthase; null-allele mutant was isolated (PMID 29743196)
chr6	7744921	7749486	7746060	7749429	-	Cre06.g302100.t1.2	Cre06.g302100.t1.2		7749377,7749109,7748755,7748301,7748027,7747748,7747572,7747075,7746657,7744921	7749486,7749188,7748884,7748402,7748091,7747830,7747593,7747432,7746819,7746361	
chr6	7749561	7756696	7750805	7756527	-	Cre06.g302150.t1.1	Cre06.g302150.t1.1		7752859,7752532,7752220,7749561	7756696,7752580,7752312,7752029	
chr6	7756766	7762066	7757472	7761822	-	EFH3	Cre06.g302200.t1.1		7761728,7761064,7760815,7760342,7759812,7758860,7758393,7756766	7762066,7761293,7760881,7760601,7760118,7759629,7758548,7758234	
chr6	7762217	7767438	7762464	7766589	+	Cre06.g302250.t1.1	Cre06.g302250.t1.1		7762217,7762741,7763154,7764382,7764649,7765224,7765446	7762540,7762865,7764115,7764503,7765106,7765316,7767438	
chr6	7770077	7772852	7770813	7771589	+	Cre06.g302276.t1.1	Cre06.g302276.t1.1		7770077,7771203	7770916,7772852	
chr6	7775977	7776868	7776201	7776844	+	Cre06.g302300.t1.2	Cre06.g302300.t1.2		7775977	7776868	
chr6	7776563	7776868	7776648	7776844	+	Cre06.g302300.t2.1	Cre06.g302300.t2.1		7776563	7776868	
chr6	7777217	7778108	7777633	7777880	+	Cre06.g302305.t1.2	Cre06.g302305.t1.2		7777217	7778108	
chr6	7778157	7783659	7778460	7781993	+	Cre06.g302350.t1.1	Cre06.g302350.t1.1		7778157,7778589,7778872,7779182,7779753,7780661	7778521,7778621,7778922,7779575,7780305,7783659	
chr6	7778307	7783659	7778460	7781993	+	Cre06.g302350.t2.1	Cre06.g302350.t2.1		7778307,7778589,7778872,7779182,7779753,7780661	7778521,7778621,7778922,7779575,7780305,7783659	
chr6	7778307	7783659	7778399	7781993	+	Cre06.g302350.t3.1	Cre06.g302350.t3.1		7778307,7778589,7778872,7779182,7779753,7780661	7778418,7778621,7778922,7779575,7780305,7783659	
chr6	7783661	7784486	7783899	7784343	-	Cre06.g302389.t1.2	Cre06.g302389.t1.2		7784334,7783661	7784486,7784151	
chr6	7784587	7788668	7784824	7787711	+	CSB31	Cre06.g302400.t1.1		7784587,7785362,7787362,7787588	7785010,7787230,7787472,7788668	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr6	7788717	7790548	7789232	7789398	+	Cre06.g302426.t1.1	Cre06.g302426.t1.1		7788717	7790548	
chr6	7790597	7796118	7790827	7795022	+	Cre06.g302450.t2.1	Cre06.g302450.t2.1		7790597,7791166,7791675,7791970,7792241,7792788,7793690	7791035,7791201,7791707,7792011,7792613,7793340,7796118	
chr6	7790367	7796024	7790827	7795022	+	Cre06.g302450.t1.1	Cre06.g302450.t1.1		7790367,7791166,7791675,7791970,7792241,7792788,7793690	7791035,7791201,7791707,7792011,7792613,7793340,7796024	
chr6	7800803	7802176	7801173	7801531	-	Cre06.g302500.t1.2	Cre06.g302500.t1.2		7801801,7800803	7802176,7801720	
chr6	7802226	7805146	7803680	7804600	-	Cre06.g302551.t1.1	Cre06.g302551.t1.1		7804496,7802226	7805146,7804245	
chr6	7805345	7811826	7805641	7811686	-	Cre06.g302600.t1.1	Cre06.g302600.t1.1		7811653,7811489,7811291,7810955,7810590,7810053,7809660,7809341,7808991,7808538,7808019,7807579,7806123,7805808,7805345	7811826,7811538,7811370,7811025,7810706,7810130,7809804,7809480,7809161,7808661,7808368,7807674,7807300,7805891,7805641	
chr6	7811954	7815797	7812046	7814910	+	RRM5	Cre06.g302650.t1.2		7811954,7812489,7812768,7813058,7813351,7813658,7813867,7814229,7814573,7814843	7812101,7812511,7812840,7813167,7813452,7813709,7813958,7814291,7814652,7815797	in the RrmJ/FtsJ family.  Possible 23S ribosomal methyltransferase
chr6	7815997	7822578	7816250	7822071	+	Cre06.g302700.t1.1	Cre06.g302700.t1.1		7815997,7816946,7817774,7818190,7818688,7819070,7819321,7819651,7820180,7820571,7820900,7821408,7821664,7821999	7816535,7817044,7817896,7818280,7818872,7819168,7819371,7819803,7820251,7820699,7821058,7821488,7821738,7822578	
chr6	7822581	7826556	7823697	7826293	-	Cre06.g302750.t1.2	Cre06.g302750.t1.2		7826211,7825904,7825582,7825087,7824866,7824267,7822581	7826556,7825995,7825762,7825237,7824935,7824464,7823847	
chr6	7828527	7831378	7828807	7830176	+	Cre06.g302800.t1.2	Cre06.g302800.t1.2		7828527,7829083	7828956,7831378	
chr6	7831410	7836456	7832025	7836277	-	Cre06.g302850.t1.2	Cre06.g302850.t1.2		7835155,7834693,7834389,7834070,7833547,7833087,7831410	7836456,7834893,7834526,7834172,7833907,7833305,7832725	
chr6	7836541	7840026	7837076	7839947	-	Cre06.g302900.t1.1	Cre06.g302900.t1.1		7839881,7839705,7839464,7839218,7838855,7838544,7836541	7840026,7839790,7839551,7839295,7838968,7838630,7838342	
chr6	7842367	7848741	7843053	7847856	+	Cre06.g302950.t1.1	Cre06.g302950.t1.1		7842367,7843232,7843660,7844768,7845184,7845438,7845711,7846109,7846507,7846849,7847281,7847589	7843138,7843351,7844576,7845016,7845282,7845509,7845900,7846284,7846704,7847146,7847450,7848741	
chr6	7849277	7856327	7849694	7854986	+	Cre06.g303000.t1.1	Cre06.g303000.t1.1		7849277,7849693,7851766,7852247,7852795,7853507,7854102,7854589	7849496,7851386,7852083,7852456,7852920,7853788,7854292,7856327	
chr6	7856457	7858214	7856873	7857794	+	NIT3	Cre06.g303050.t1.2		7856457,7857503	7857302,7858214	Nitrate reductase (NADH); NADH-cytochrome b5 reductase
chr6	7859987	7865016	7860750	7864699	-	Cre06.g303100.t1.2	Cre06.g303100.t1.2		7864296,7862999,7862551,7862270,7862012,7861705,7861445,7859987	7865016,7863307,7862764,7862408,7862139,7861882,7861555,7861137	
chr6	7868548	7879866	7870497	7879540	-	PTK4	Cre06.g303150.t1.1		7879696,7876815,7876491,7876203,7871910,7871574,7871145,7870731,7868548	7879866,7879574,7876619,7876322,7876028,7871649,7871430,7870856,7870545	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr6	7879921	7885716	7880398	7885639	-	Cre06.g303171.t1.2	Cre06.g303171.t1.2		7883429,7882239,7880813,7879921	7885716,7883309,7882082,7880626	
chr6	7885791	7886986	7886027	7886897	-	Cre06.g303183.t1.2	Cre06.g303183.t1.2		7886861,7886665,7886537,7886305,7885791	7886986,7886794,7886575,7886402,7886162	
chr6	7887107	7889628	7887810	7888772	+	Cre06.g303192.t1.1	Cre06.g303192.t1.1		7887107,7888200	7888057,7889628	
chr6	7892707	7903170	7893774	7901889	+	MAW7	Cre06.g303200.t1.1		7892707,7893269,7893736,7894216,7899829,7901584	7893134,7893341,7894089,7899689,7901459,7903170	Contains a predicted C-terminal transmembrane domain.
chr6	7903217	7911628	7903358	7911167	+	Cre06.g303251.t1.1	Cre06.g303251.t1.1		7903217,7904479,7904819,7910899	7903554,7904717,7910661,7911628	
chr6	7911677	7915818	7912080	7915339	+	CYN37	Cre06.g303300.t1.2		7911677,7911902,7912492,7912796,7913090,7913531,7914124,7914369,7914879,7915233	7911779,7912280,7912603,7912875,7913279,7913736,7914212,7914532,7914928,7915818	Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; similar to At5g35100 (AtCYP28); possibly directed to chloroplast thylakoid lumen
chr6	7915821	7918706	7916349	7918499	-	Cre06.g303350.t1.2	Cre06.g303350.t1.2		7918430,7918295,7918105,7917715,7917154,7916680,7915821	7918706,7918351,7918134,7917803,7917280,7916821,7916507	
chr6	7918761	7930936	7919379	7930823	-	FAP16	Cre06.g303400.t1.1		7930720,7930183,7929738,7929371,7928829,7928485,7928162,7927600,7927272,7926913,7926635,7926285,7925935,7925529,7925131,7924813,7924476,7924137,7923893,7923466,7923133,7922736,7922474,7922129,7921802,7921521,7921158,7920735,7920388,7918761	7930936,7930376,7929788,7929570,7929036,7928616,7928320,7927820,7927383,7927072,7926738,7926424,7926118,7925661,7925276,7924884,7924649,7924272,7923993,7923738,7923323,7922976,7922575,7922257,7921917,7921660,7921316,7920930,7920526,7920213	ADF3, necessary for axonemal severing  (PubMed ID:27520959 Hilton et al. Quarmby 2016); Similar to Echinoderm Microtubule Binding Protein
chr6	7931097	7938338	7931516	7937486	+	Cre06.g303450.t1.1	Cre06.g303450.t1.1		7931097,7931443,7931672,7932098,7932422,7932800,7933074,7936177	7931336,7931573,7931896,7932298,7932591,7932872,7936045,7938338	
chr6	7939264	7946226	7941559	7945874	-	Cre06.g303483.t1.2	Cre06.g303483.t1.2		7945647,7945459,7944991,7939264	7946226,7945496,7945088,7944664	
chr6	7946341	7950876	7946976	7950730	-	Cre06.g303500.t1.2	Cre06.g303500.t1.2		7950256,7949848,7949473,7949042,7948569,7948051,7947734,7946341	7950876,7950040,7949573,7949150,7948791,7948408,7947856,7947189	
chr6	7950931	7954376	7951273	7954259	-	Cre06.g303536.t1.1	Cre06.g303536.t1.1		7953832,7953046,7952699,7952399,7952081,7951719,7950931	7954376,7953674,7952875,7952479,7952196,7951887,7951450	
chr6	7954461	7958226	7954748	7958091	-	Cre06.g303572.t1.2	Cre06.g303572.t1.2		7958064,7957423,7956489,7956091,7955868,7955448,7954461	7958226,7957916,7957195,7956320,7955930,7955663,7955297	
chr6	7958387	7961293	7958552	7960279	+	Cre06.g303600.t1.1	Cre06.g303600.t1.1		7958387,7960015	7959698,7961293	
chr6	7961681	7968826	7962834	7968724	-	Cre06.g303650.t1.1	Cre06.g303650.t1.1		7968653,7968363,7967933,7967545,7967020,7966564,7966179,7965812,7965315,7964854,7964458,7963961,7963550,7963180,7961681	7968826,7968468,7968040,7967646,7967166,7966680,7966439,7965955,7965418,7965066,7964605,7964074,7963663,7963257,7962930	null-allele mutant was isolated (PMID 29743196)
chr6	7968873	7970956	7969483	7970730	-	Cre06.g303700.t1.2	Cre06.g303700.t1.2		7970589,7970208,7968873	7970956,7970314,7969601	
chr6	7971021	7978336	7971714	7978294	-	Cre06.g303751.t1.1	Cre06.g303751.t1.1		7977931,7977164,7976049,7975737,7975277,7974843,7974439,7973511,7972983,7972604,7972145,7971021	7978336,7977506,7976929,7975863,7975519,7974994,7974587,7974109,7973367,7972654,7972457,7971891	
chr6	7979009	7986716	7979295	7986488	-	Cre06.g303800.t1.2	Cre06.g303800.t1.2		7986462,7985420,7984102,7983654,7983344,7982993,7982607,7982161,7981684,7981373,7980963,7980348,7979705,7979009	7986716,7986294,7984175,7983859,7983500,7983086,7982704,7982253,7981812,7981471,7981112,7980506,7980115,7979535	
chr6	7986837	7990478	7986972	7989645	+	Cre06.g303850.t1.1	Cre06.g303850.t1.1		7986837,7987107,7987254,7987560,7988471,7988847	7987005,7987167,7987334,7987870,7988554,7990478	
chr6	7990592	7994986	7992101	7994340	-	Cre06.g303900.t1.1	Cre06.g303900.t1.1		7994464,7993745,7992983,7992513,7990592	7994986,7994347,7993176,7992740,7992239	
chr6	7995457	7999073	7995650	7998750	+	Cre06.g303950.t1.2	Cre06.g303950.t1.2		7995457,7996203,7996799,7997239,7997557,7997783,7998177,7998614	7995863,7996329,7996985,7997335,7997619,7997871,7998395,7999073	
chr6	8000001	8014670	8000001	8014326	+	Cre06.g304000.t1.2	Cre06.g304000.t1.2		8000001,8001974,8002262,8003387,8003701,8003989,8004325,8004755,8005399,8005729,8006120,8006674,8006980,8007255,8008063,8008419,8008952,8009317,8009834,8010169,8010526,8010918,8012289,8012581,8012904,8013295,8013714,8014095	8001626,8002041,8003147,8003485,8003798,8004093,8004463,8005019,8005480,8005843,8006477,8006741,8007111,8007644,8008203,8008511,8009105,8009537,8009930,8010266,8010660,8012077,8012397,8012673,8013026,8013447,8013875,8014670	SNF2-related helicase, ChromDB CHR3419; Chromatin remodeling complex subunit R
chr6	8014926	8017734	8015399	8017438	+	PKC1	Cre06.g304050.t1.1		8014926,8015505,8015726,8016017,8016214,8016502,8016675,8016957,8017309	8015422,8015601,8015851,8016085,8016297,8016534,8016836,8017127,8017734	Homology to ribosomal protein S6 kinase alpha
chr6	8017786	8023267	8017877	8022884	+	Cre06.g304100.t1.2	Cre06.g304100.t1.2		8017786,8018042,8018528,8018741,8019039,8019347,8019827,8020282,8020563,8020985,8021296,8021706,8022046,8022237,8022597,8022857	8017937,8018230,8018566,8018779,8019152,8019404,8019951,8020435,8020720,8021145,8021419,8021819,8022114,8022338,8022653,8023267	
chr6	8023386	8033216	8023528	8031928	+	Cre06.g304150.t1.1	Cre06.g304150.t1.1		8023386,8023629,8023859,8024222,8024568,8024895,8025063,8026033,8026512,8026780,8027245,8027391,8027735,8028171,8028434,8028676,8028963,8029291,8029514,8029712,8029900,8030142,8030396,8030847,8031091,8031355,8031640,8031837	8023567,8023688,8024074,8024398,8024791,8024949,8025865,8026324,8026543,8026846,8027276,8027457,8027766,8028237,8028465,8028745,8028994,8029357,8029545,8029778,8029931,8030211,8030424,8030913,8031122,8031421,8031671,8033216	
chr6	8033539	8042545	8034959	8041807	-	RLS2	Cre06.g304250.t1.1		8042329,8042070,8038849,8038530,8033539	8042545,8042077,8041862,8038625,8038322	Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342)
chr6	8042880	8046410	8043430	8046102	-	POA6	Cre06.g304300.t1.2		8046276,8046060,8045617,8045106,8044804,8044407,8044016,8042880	8046410,8046161,8045786,8045169,8044950,8044473,8044185,8043538	20S proteasome alpha subunit F (type 1)
chr6	8046506	8048480	8046656	8047923	+	COX12	Cre06.g304350.t1.2		8046506,8046787,8046921,8047071,8047201,8047537,8047869	8046707,8046852,8046995,8047106,8047283,8047618,8048480	Cytochrome c oxidase COX12 (CoxVIb) subunit (16 kDa) [PMID: 12746537]; gene termed COX12 in S. cerevisiae and other yeasts, but COX6B in H. sapiens & B. taurus. See also Genbank Acc. No. DQ401083 for prior naming as COX6B in Chlamydomonas sp.
chr6	8048546	8055247	8048927	8054417	+	SOUL4	Cre06.g304400.t1.1		8048546,8048922,8050412,8050918,8052179,8053057,8053496,8053877,8054144	8048744,8048989,8050582,8050985,8052258,8053154,8053601,8054038,8055247	conserved expressed protein with SOUL heme binding motif
chr6	8058656	8062937	8059403	8060302	+	Cre06.g304450.t1.2	Cre06.g304450.t1.2		8058656,8059236,8060044	8058955,8059664,8062937	
chr6	8064264	8068275	8064359	8067468	+	ZYS4	Cre06.g304500.t1.2		8064264,8064680,8065376,8065825,8066234,8066503,8066769,8067050,8067377	8064476,8064895,8065556,8065970,8066305,8066570,8066845,8067149,8068275	Very similar to ZYS3, a zygote-specific protein [PMID: 10069826]; partial sequence contains ankyrin repeats
chr6	8068606	8083767	8068811	8082494	+	PAR1	Cre06.g304550.t1.1		8068606,8069083,8069466,8070069,8070429,8070986,8071465,8071941,8072466,8073012,8073660,8074160,8074705,8075237,8075805,8076107,8076388,8076781,8077036,8077384,8077802,8078396,8078810,8079408,8079923,8080471,8081071,8081491,8081766,8082344	8068877,8069128,8069604,8070120,8070584,8071111,8071587,8072117,8072729,8073179,8073951,8074344,8074839,8075457,8075904,8076193,8076489,8076897,8077132,8077451,8077859,8078682,8079134,8079667,8080272,8080701,8081271,8081578,8082077,8083767	sequence similarity with PAB-dependent poly(A)-specific ribonuclease subunit PAN2 (PAB1P-dependent poly(A)-nuclease) human, yeast. Also similar to ubiquitin specific protease 52 (usp52)
chr6	8083770	8088679	8084374	8088576	-	Cre06.g304600.t1.2	Cre06.g304600.t1.2		8088264,8087636,8087105,8086756,8086123,8085646,8085118,8084719,8083770	8088679,8087791,8087187,8086855,8086293,8085835,8085327,8084876,8084467	
chr6	8088776	8100007	8089065	8098656	+	PIK3	Cre06.g304650.t1.1		8088776,8089343,8089754,8090099,8091641,8091944,8093997,8094562,8095651,8097004,8097365,8097788,8098185,8098536	8089181,8089529,8089855,8091475,8091805,8093874,8094391,8095494,8096810,8097107,8097576,8097966,8098325,8100007	Phosphatidylinositol 3-kinase like with rhodanese-like domain
chr6	8100010	8103195	8100946	8102750	-	Cre06.g304700.t1.2	Cre06.g304700.t1.2		8102693,8100010	8103195,8102440	
chr6	8103466	8106197	8103664	8105288	+	Cre06.g304750.t1.2	Cre06.g304750.t1.2		8103466	8106197	
chr6	8107308	8113425	8107599	8113289	-	Cre06.g304800.t1.2	Cre06.g304800.t1.2		8113163,8112909,8112277,8111461,8111124,8110629,8110100,8109588,8109054,8107308	8113425,8112992,8112642,8111963,8111241,8110736,8110210,8109842,8109225,8108780	
chr6	8113546	8119397	8113749	8118794	+	Cre06.g304850.t1.1	Cre06.g304850.t1.1		8113546,8114326,8114946,8117058,8117447,8117850,8118653	8113884,8114570,8116667,8117161,8117593,8118520,8119397	
chr6	8119446	8124117	8119477	8123766	+	Cre06.g304876.t1.1	Cre06.g304876.t1.1		8119446,8120365,8120739,8120944,8121212,8121731,8122089,8122313,8122631,8123007,8123349	8120031,8120493,8120782,8121018,8121459,8121828,8122128,8122387,8122738,8123090,8124117	
chr6	8124125	8128955	8124287	8128821	-	Cre06.g304913.t1.1	Cre06.g304913.t1.1		8128796,8128068,8127548,8126096,8125706,8125308,8124933,8124125	8128955,8128358,8127796,8127375,8125798,8125405,8125053,8124551	
chr6	8129150	8134025	8130508	8133675	-	Cre06.g304950.t1.2	Cre06.g304950.t1.2		8133487,8133238,8132852,8131410,8130978,8129150	8134025,8133308,8132991,8132476,8131221,8130751	
chr6	8134076	8140805	8135573	8140740	-	Cre06.g305000.t1.2	Cre06.g305000.t1.2		8140624,8140327,8139990,8139482,8139108,8138687,8138442,8138120,8137761,8137421,8134076	8140805,8140468,8140121,8139757,8139212,8138848,8138500,8138252,8137925,8137495,8135735	
chr6	8140857	8144955	8141398	8144067	-	CGL45	Cre06.g305050.t1.1		8144246,8143753,8143522,8143301,8143064,8142710,8142431,8142170,8142001,8140857	8144955,8144123,8143612,8143384,8143157,8142895,8142563,8142290,8142045,8141815	Conserved in the Green Lineage
chr6	8145126	8154115	8146084	8154035	-	Cre06.g305100.t1.1	Cre06.g305100.t1.1		8154013,8153789,8153427,8152811,8152371,8152188,8151898,8151473,8151154,8150899,8150313,8150104,8149716,8149299,8148872,8148558,8148363,8148233,8147818,8147484,8147032,8146642,8145126	8154115,8153866,8153600,8153156,8152633,8152229,8152034,8151623,8151227,8150978,8150510,8150143,8149880,8149406,8149048,8148689,8148388,8148305,8147933,8147620,8147260,8146735,8146426	
chr6	8154180	8159875	8154902	8159175	-	Cre06.g305150.t1.1	Cre06.g305150.t1.1		8159633,8158890,8158602,8157703,8156940,8155233,8154180	8159875,8159199,8158679,8158440,8157563,8156780,8154998	null-allele mutant was isolated (PMID 29743196)
chr6	8160026	8163080	8160141	8162576	+	Cre06.g305200.t1.1	Cre06.g305200.t1.1		8160026,8160506,8160867,8161372,8161659,8161966,8162370	8160263,8160580,8160961,8161531,8161798,8162172,8163080	
chr6	8163256	8166867	8163465	8166652	+	Cre06.g305250.t1.1	Cre06.g305250.t1.1		8163256,8163622,8164121,8164430,8164678,8164993,8165442,8165769,8165982,8166223	8163498,8163941,8164211,8164531,8164774,8165175,8165574,8165874,8166029,8166867	
chr6	8166936	8174357	8167350	8174006	+	Cre06.g305251.t1.2	Cre06.g305251.t1.2		8166936,8167349,8168029,8170068,8171169,8171755,8172054,8173475,8173694	8167064,8167886,8169670,8171039,8171591,8171938,8173285,8173600,8174357	
chr6	8174754	8179345	8175531	8179318	+	Cre06.g305302.t1.1	Cre06.g305302.t1.1		8174754,8175928,8176450,8177084,8177558,8177866,8178327,8178744,8179030,8179318	8175606,8176369,8176928,8177498,8177808,8178255,8178665,8178906,8179247,8179345	
chr6	8179394	8190963	8179522	8189732	+	Cre06.g305350.t1.1	Cre06.g305350.t1.1		8179394,8179604,8180412,8180702,8180949,8181560,8181878,8183138,8183534,8183912,8184552,8185486,8185962,8186263,8186827,8187055,8187269,8187527,8187899,8188344,8188846,8189363	8179536,8180199,8180560,8180746,8181089,8181684,8181968,8183278,8183711,8184175,8185189,8185647,8186056,8186635,8186871,8187126,8187372,8187661,8188031,8188521,8188964,8190963	
chr6	8191188	8195403	8192056	8194567	-	Cre06.g305400.t1.2	Cre06.g305400.t1.2		8195041,8194297,8192442,8191188	8195403,8194694,8194154,8192266	
chr6	8195468	8201173	8196019	8200928	-	Cre06.g305450.t1.1	Cre06.g305450.t1.1		8200259,8199873,8199484,8199212,8195468	8201173,8199999,8199643,8199341,8198221	
chr6	8201274	8204185	8201361	8203262	+	Cre06.g305500.t1.2	Cre06.g305500.t1.2		8201274,8201574,8201700,8202363,8202648,8203041	8201381,8201607,8201906,8202450,8202749,8204185	
chr6	8201274	8204185	8201804	8203262	+	Cre06.g305500.t2.1	Cre06.g305500.t2.1		8201274,8201700,8202363,8202648,8203041	8201381,8201906,8202450,8202749,8204185	
chr6	8204228	8209193	8205171	8206527	-	Cre06.g305516.t1.1	Cre06.g305516.t1.1		8208940,8207251,8206508,8205879,8204228	8209193,8207298,8206553,8205964,8205591	
chr6	8204228	8206023	8205171	8205909	-	Cre06.g305516.t2.1	Cre06.g305516.t2.1		8205879,8204228	8206023,8205591	
chr6	8209252	8212033	8210134	8211798	-	Cre06.g305550.t1.2	Cre06.g305550.t1.2		8211746,8211439,8210884,8210569,8209252	8212033,8211502,8211323,8210676,8210241	
chr6	8212087	8215813	8213029	8215761	-	ADH9	Cre06.g305600.t1.2		8215662,8214828,8214328,8214036,8213799,8213420,8212087	8215813,8215072,8214521,8214166,8213874,8213651,8213195	Alcohol dehydrogenase, zinc-containing
chr6	8215905	8222645	8216171	8221871	+	Cre06.g305650.t1.2	Cre06.g305650.t1.2		8215905,8217088,8217456,8217914,8218199,8218532,8218811,8219234,8219478,8219843,8220206,8220495,8221170,8221437	8216852,8217150,8217588,8217962,8218361,8218619,8218855,8219310,8219551,8219936,8220316,8220718,8221234,8222645	Contains Rieske iron-sulfur cluster domain; similar to Tic55-II; belongs to the classical family of short chain dehydrogenases [PMID: 15180984]
chr6	8222693	8228865	8222833	8228167	+	Cre06.g305700.t1.1	Cre06.g305700.t1.1		8222693,8222910,8223224,8223453,8223921,8224524,8225332,8225743,8226293,8226667,8227011	8222843,8223148,8223355,8223654,8224135,8224748,8225538,8225943,8226376,8226770,8228865	
chr6	8228878	8232683	8229945	8232642	-	Cre06.g305750.t1.2	Cre06.g305750.t1.2		8232569,8232257,8232004,8231474,8230992,8228878	8232683,8232290,8232085,8231605,8231233,8230720	
chr6	8232748	8233833	8232942	8233554	-	Cre06.g305800.t1.2	Cre06.g305800.t1.2		8233499,8233300,8232748	8233833,8233365,8233205	
chr6	8233898	8239493	8234658	8238867	-	Cre06.g305850.t1.1	Cre06.g305850.t1.1		8239263,8239111,8238837,8238537,8238203,8237856,8237350,8237027,8236563,8236264,8235354,8233898	8239493,8239158,8238969,8238625,8238249,8237928,8237449,8237159,8236834,8236304,8236114,8235185	
chr6	8240414	8245516	8240561	8244824	+	CPLD22	Cre06.g305900.t1.1		8240414,8240908,8241311,8241513,8242490,8243419,8243716,8244211,8244547	8240705,8241065,8241365,8241545,8242641,8243504,8243921,8244287,8245516	UAA transporter
chr6	8245564	8247254	8245831	8246907	+	CSB32	Cre06.g305950.t1.2		8245564,8246558,8246784	8246461,8246668,8247254	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr6	8247468	8254313	8248445	8253705	-	GOX3	Cre06.g306000.t1.1		8252413,8252042,8251413,8251086,8250686,8250199,8249861,8249514,8249134,8247468	8254313,8252131,8251563,8251189,8250854,8250393,8249920,8249672,8249346,8248937	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain
chr6	8254368	8256163	8255065	8255814	-	Cre06.g306007.t1.1	Cre06.g306007.t1.1		8255778,8254368	8256163,8255206	
chr6	8256434	8257495	8256533	8257388	+	Cre06.g306014.t1.1	Cre06.g306014.t1.1		8256434,8256819,8257052,8257181	8256702,8256886,8257099,8257495	
chr6	8281738	8283943	8282812	8283561	-	Cre06.g306021.t1.1	Cre06.g306021.t1.1		8283525,8281738	8283943,8282953	
chr6	8284154	8285985	8284280	8285836	+	Cre06.g306028.t1.1	Cre06.g306028.t1.1		8284154,8284566,8284799,8284928,8285587	8284449,8284633,8284846,8285125,8285985	
chr6	8289894	8293595	8291856	8292049	+	Cre06.g306035.t1.1	Cre06.g306035.t1.1		8289894,8290663,8291091,8291376,8291800	8290301,8290856,8291165,8291441,8293595	
chr6	8289894	8293595	8291856	8292049	+	Cre06.g306035.t2.1	Cre06.g306035.t2.1		8289894,8290723,8291091,8291376,8291800	8290301,8290856,8291165,8291441,8293595	
chr6	8299814	8304655	8300256	8304275	+	Cre06.g306050.t1.1	Cre06.g306050.t1.1		8299814,8300951,8301407,8301959,8302328,8302638,8302895,8303222,8303640,8304275	8300638,8300977,8301715,8302172,8302466,8302765,8303072,8303332,8304116,8304655	
chr6	8304704	8308435	8304749	8307062	+	Cre06.g306057.t1.2	Cre06.g306057.t1.2		8304704,8304823,8305552,8306172,8306659	8304755,8304948,8305833,8306362,8308435	
chr6	8310048	8312683	8310862	8311924	-	Cre06.g306079.t1.1	Cre06.g306079.t1.1		8311847,8310048	8312683,8310986	
chr6	8315811	8318103	8316360	8318079	-	Cre06.g306100.t1.2	Cre06.g306100.t1.2		8317920,8317118,8315811	8318103,8317392,8316360	
chr6	8315811	8318103	8316360	8318079	-	Cre06.g306100.t2.1	Cre06.g306100.t2.1		8317920,8316827,8315811	8318103,8317392,8316360	
chr6	8318258	8326053	8319013	8325832	-	Cre06.g306150.t1.1	Cre06.g306150.t1.1		8325541,8324971,8324549,8324104,8323485,8323162,8322633,8322134,8321661,8321420,8320981,8320440,8320255,8319807,8319224,8318258	8326053,8325075,8324668,8324306,8323812,8323308,8322923,8322235,8321987,8321455,8321105,8320508,8320339,8320084,8319651,8319051	
chr6	8326285	8329213	8326873	8329185	-	Cre06.g306200.t1.1	Cre06.g306200.t1.1		8329041,8328800,8328196,8327789,8327314,8326285	8329213,8328892,8328379,8327958,8327449,8327052	
chr6	8329266	8333497	8330209	8332857	-	Cre06.g306250.t1.1	Cre06.g306250.t1.1		8333104,8332593,8332305,8331816,8331561,8331149,8329266	8333497,8332886,8332358,8331906,8331707,8331300,8330938	
chr6	8329315	8333453	8330209	8332857	-	Cre06.g306250.t2.1	Cre06.g306250.t2.1		8333104,8332593,8332305,8331816,8331561,8331149,8329315	8333453,8332877,8332358,8331906,8331707,8331300,8330938	
chr6	8333800	8337913	8334651	8337853	-	CHLI1	Cre06.g306300.t1.2		8337733,8337595,8337414,8337156,8336566,8336321,8335745,8335409,8334995,8333800	8337913,8337631,8337473,8337331,8336758,8336409,8335844,8335553,8335196,8334783	Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase); orthologous to the bacterial magnesium chelatase subunits BchI, and other plant magnesium chelatase subunits ChlI [PMID: 9359397]. Forms an ATP dependent hexameric ring complex and a complex with the ChlD subunit (probably a double hexameric ring complex) before acting on the protoporphyrin which is bound to the ChlH protein to insert magnesium [PMID: 11469861]. Transcript is light regulated and may be diurnal and/or circadian [PMID: 16228385]; predicted chloroplast targeting sequence amino acids 1-54 by ChloroP.
chr6	8338012	8339406	8338115	8338680	+	FDX3	Cre06.g306350.t1.2		8338012	8339406	Fe2S2 containing redox protein, predicted chloroplast localization
chr6	8340204	8346401	8340467	8345558	+	Cre06.g306400.t1.2	Cre06.g306400.t1.2		8340204,8340588,8341040,8341373,8341714,8342083,8342261,8342942,8343309,8343796,8344592,8345003,8345418	8340510,8340640,8341093,8341438,8341801,8342138,8342523,8343024,8343430,8343940,8344661,8345088,8346401	
chr6	8346534	8348935	8346577	8348234	+	Cre06.g306450.t1.2	Cre06.g306450.t1.2		8346534,8347230,8347675,8347940,8348158	8346981,8347385,8347850,8347961,8348935	
chr6	8349004	8351525	8349080	8351250	+	Cre06.g306501.t1.1	Cre06.g306501.t1.1		8349004,8349205,8349975,8350354,8351133	8349080,8349740,8350133,8350888,8351525	
chr6	8352284	8357343	8352516	8356134	+	Cre06.g306550.t1.1	Cre06.g306550.t1.1		8352284,8352665,8353057,8353537,8353944	8352560,8352721,8353327,8353668,8357343	
chr6	8357854	8365275	8357942	8364477	+	ANS1	Cre06.g306601.t1.1		8357854,8358148,8358419,8358824,8359838,8360479,8360820,8361265,8361691,8362156,8362668,8363006,8363449,8363962,8364342	8358032,8358235,8358584,8359019,8359985,8360588,8360922,8361344,8361855,8362290,8362745,8363173,8363533,8364095,8365275	Putative anthranilate synthase, alpha subunit, component I-2 (ASA2) [EC:4.1.3.27]
chr6	8366160	8371635	8366839	8370837	-	Cre06.g306650.t1.1	Cre06.g306650.t1.1		8371343,8370274,8369852,8369245,8368944,8368437,8368126,8367579,8367162,8366160	8371635,8370895,8370059,8369451,8369045,8368525,8368155,8367699,8367276,8366985	
chr6	8366160	8371145	8366839	8370837	-	Cre06.g306650.t2.1	Cre06.g306650.t2.1		8370274,8369852,8369245,8368944,8368437,8368126,8367579,8367162,8366160	8371145,8370059,8369451,8369045,8368525,8368155,8367699,8367276,8366985	
chr6	8371636	8374645	8372292	8373831	+	Cre06.g306700.t1.1	Cre06.g306700.t1.1		8371636,8372275,8372776,8373254,8373540	8372172,8372499,8372940,8373364,8374645	
chr6	8374726	8375557	8375087	8375352	+	Cre06.g306726.t1.1	Cre06.g306726.t1.1		8374726	8375557	
chr6	8375606	8379676	8375962	8378486	+	FAP290	Cre06.g306750.t1.2		8375606,8376222,8376476,8376838,8377591,8377815,8378294	8376112,8376293,8376619,8376969,8377674,8377964,8379676	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr6	8379765	8382925	8380570	8382279	-	CGL126	Cre06.g306800.t1.2		8382838,8382581,8382083,8381761,8381277,8381073,8380844,8379765	8382925,8382736,8382290,8381879,8381390,8381183,8380916,8380680	Conserved in the Green Lineage
chr6	8383026	8390819	8383132	8390126	+	HEL31	Cre06.g306850.t1.2		8383026,8383242,8383471,8384142,8384940,8385285,8385848,8386084,8386479,8386899,8387385,8387727,8388170,8388616,8389112,8390018	8383135,8383275,8383631,8384231,8385005,8385383,8385900,8386179,8386563,8387030,8387504,8387782,8388278,8388777,8389252,8390819	
chr6	8391392	8399955	8391778	8399710	-	SRR9	Cre06.g306900.t1.1		8399611,8399355,8398356,8397776,8397527,8397160,8396783,8396405,8396154,8395737,8394996,8394667,8394394,8393712,8392989,8392359,8392136,8391392	8399955,8399493,8398415,8397951,8397591,8397223,8396935,8396510,8396262,8395905,8395326,8394788,8394551,8394010,8393146,8392626,8392162,8391951	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr6	8400110	8409635	8401118	8409407	-	Cre06.g306950.t1.1	Cre06.g306950.t1.1		8409088,8408914,8408747,8408582,8408323,8408049,8407631,8407376,8407184,8406689,8405836,8405290,8404908,8404573,8404222,8403686,8403007,8402693,8402426,8402131,8400110	8409635,8408969,8408833,8408662,8408516,8408133,8407832,8407469,8407236,8406954,8406543,8405492,8405106,8404776,8404394,8403976,8403507,8402846,8402554,8402284,8401954	Serine/Threonine Protein Kinase Homolog 15
chr6	8410866	8414627	8411152	8414594	+	Cre06.g307012.t1.1	Cre06.g307012.t1.1		8410866,8411787,8411991,8413361,8413751,8413975,8414273	8411372,8411828,8412023,8413620,8413834,8413995,8414627	
chr6	8414676	8416447	8414736	8415826	+	Cre06.g307075.t1.2	Cre06.g307075.t1.2		8414676,8415238,8415569	8414766,8415289,8416447	
chr6	8417536	8425048	8417701	8424194	+	AKC2	Cre06.g307100.t1.1		8417536,8418067,8418414,8418923,8419332,8420079,8420389,8420849,8421270,8421703,8422095,8422890,8423534,8424015	8417929,8418144,8418539,8419091,8419636,8420168,8420453,8420969,8421355,8421751,8422225,8423004,8423645,8425048	Similar to ABC1-transporter protein family; these proteins have a nuclear or mitochondrial subcellular location in eukaryotes; contains a LysM-domain which is found in a variety of enzymes in
chr6	8425366	8429363	8425953	8428522	+	AMYB1	Cre06.g307150.t1.1		8425366,8426324,8426999,8427449,8427851,8428300	8426243,8426931,8427176,8427668,8428117,8429363	Belongs to glycoside hydrolase family 14; alpha 1,4-glucan maltohydrolase (EC 3.2.1.2), hydrolyzes the alpha 1,4-glucosidic linkages of starch from the nonreducing ends.
chr6	8432451	8434305	8432888	8433993	-	Cre06.g307200.t1.2	Cre06.g307200.t1.2		8433972,8433759,8432451	8434305,8433854,8433056	
chr6	8434626	8442485	8435191	8442257	-	Cre06.g307250.t1.2	Cre06.g307250.t1.2		8442143,8441874,8441495,8441026,8439612,8439273,8438879,8438539,8438032,8437511,8437250,8436948,8436621,8436248,8435829,8434626	8442485,8442065,8441593,8441166,8440847,8439410,8439007,8438673,8438277,8437804,8437339,8437058,8436785,8436406,8435978,8435650	
chr6	8442626	8447227	8442749	8446234	+	ANT2	Cre06.g307300.t1.1		8442626,8443054,8443229,8443761,8444494,8444672,8445107,8445668,8446031	8442845,8443105,8443287,8444218,8444531,8444817,8445349,8445764,8447227	putative adenine nucleotide translocase; ADP/ATP carrier protein, probably mitochondrial
chr6	8447237	8453735	8447912	8453617	-	Cre06.g307350.t1.1	Cre06.g307350.t1.1		8453564,8453299,8452970,8452579,8451980,8451576,8451111,8450642,8450274,8449552,8447237	8453735,8453358,8453042,8452784,8452289,8451695,8451245,8450713,8450363,8450065,8449291	
chr6	8453902	8458875	8455031	8458776	-	CCR5	Cre06.g307400.t1.2		8458671,8458285,8457931,8457520,8457146,8456753,8456545,8456193,8455983,8455490,8453902	8458875,8458496,8457985,8457666,8457229,8456865,8456593,8456276,8456138,8455627,8455163	similar to CCR4 subunit 6; possibly a NOT-complex component involved in tyranscriptional regulation
chr6	8453902	8458875	8455031	8458776	-	CCR5	Cre06.g307400.t2.1		8458671,8458285,8457931,8457520,8457146,8456753,8456545,8456193,8455490,8453902	8458875,8458496,8457985,8457666,8457229,8456865,8456593,8456276,8455627,8455163	similar to CCR4 subunit 6; possibly a NOT-complex component involved in tyranscriptional regulation
chr6	8458996	8465607	8459238	8465030	+	Cre06.g307450.t1.2	Cre06.g307450.t1.2		8458996,8459943,8460552,8460999,8461580,8461950,8462384,8462842,8463280,8463658,8463992	8459476,8460043,8460719,8461124,8461704,8462058,8462560,8463133,8463392,8463747,8465607	
chr6	8466076	8469153	8466910	8469075	-	LCIC	Cre06.g307500.t1.1		8468827,8468635,8468117,8467525,8466076	8469153,8468726,8468400,8467908,8467234	low-CO2 inducible protein; homologous to LCIB with which it forms a complex; differentially expressed in Volvox regA mutant, impaired in somatic differentiation; regulated by CCM1 [PMID: 15235119]; localization is diffuse in chloroplast stroma under high-CO2 and low-CO2 conditions, but aggregated around pyrenoid as ring-like structure under very low-CO2 conditions; Crystal structure of LCIB and LCIC harbor motifs bearing close resemblance to the active site of canonical beta type carbonic anhydrase, suggesting that LCIB/LCIC complex is required for the uptake of external CO2 into the stromal bicarbonate pool and the prevention of CO2 leakage from the pyrenoid.
chr6	8470664	8474195	8470919	8474135	-	Cre06.g307551.t1.1	Cre06.g307551.t1.1		8473990,8473669,8473333,8472720,8472373,8471943,8471307,8470664	8474195,8473873,8473376,8472797,8472524,8472086,8471438,8471018	
chr6	8474316	8477910	8474427	8477229	+	Cre06.g307600.t1.2	Cre06.g307600.t1.2		8474316,8474673,8475643,8476018,8476237,8476683,8477005	8474586,8474867,8475810,8476053,8476290,8476770,8477910	ChromDB NFA345; a member of a small protein family related to Nucleosome Assembly Protein 1 (NAP1) in mouse and yeast. NAP proteins are thought to act as histone chaperones
chr6	8477930	8484695	8478503	8484647	-	Cre06.g307650.t1.1	Cre06.g307650.t1.1		8484544,8484446,8484136,8483491,8483075,8482678,8482128,8481735,8480913,8480411,8480200,8479748,8479445,8478967,8477930	8484695,8484478,8484203,8483605,8483238,8482788,8482326,8481817,8481335,8480662,8480256,8479971,8479507,8479135,8478755	
chr6	8477930	8484645	8478503	8484193	-	Cre06.g307650.t2.1	Cre06.g307650.t2.1		8484544,8484446,8484136,8483491,8483075,8482678,8482128,8481735,8480913,8480411,8480200,8479748,8479445,8478967,8477930	8484645,8484478,8484203,8483605,8483238,8482788,8482326,8481817,8481335,8480662,8480256,8479971,8479507,8479135,8478755	
chr6	8484796	8491676	8485089	8489523	+	Cre06.g307700.t1.1	Cre06.g307700.t1.1		8484796,8485349,8485869,8486109,8486263,8486452,8486806,8487016,8487219,8487567,8487952,8488786,8489373	8485161,8485618,8485952,8486177,8486329,8486558,8486886,8487070,8487391,8487706,8488024,8488911,8491676	
chr6	8491812	8496050	8491919	8495471	+	Cre06.g307750.t1.2	Cre06.g307750.t1.2		8491812,8492096,8492604,8493145,8493518,8493866,8494020,8494466,8494850,8495070,8495362	8491986,8492139,8492742,8493232,8493570,8493900,8494181,8494534,8494954,8495170,8496050	
chr6	8496576	8501111	8496666	8500471	+	CYN49	Cre06.g307800.t1.2		8496576,8497157,8497710,8498326,8498824,8499277,8499468,8499834,8500351	8496825,8497428,8497808,8498449,8498987,8499338,8499554,8499898,8501111	Peptidyl-prolyl cis-transisomerase, cyclophilin type; most similar to CYN48-CYN53 and bacterial cyclophilins
chr6	8501200	8508655	8502223	8508514	-	Cre06.g307850.t1.2	Cre06.g307850.t1.2		8508453,8507681,8507206,8506582,8505967,8505740,8505326,8504781,8503260,8501200	8508655,8507865,8507301,8506645,8506198,8505774,8505481,8505122,8504615,8503101	
chr6	8508806	8511391	8509075	8510899	+	FAP141	Cre06.g307900.t1.2		8508806,8510232,8510610,8510834	8509116,8510320,8510702,8511391	Flagellar Associated Protein, found in the flagellar proteome
chr6	8511422	8514125	8511856	8514080	-	Cre06.g307950.t1.1	Cre06.g307950.t1.1		8513741,8513354,8512901,8512521,8511422	8514125,8513479,8512990,8512691,8512045	
chr6	8514246	8528007	8514477	8527473	+	FAP331	Cre06.g308000.t1.2		8514246,8515212,8515641,8516151,8516488,8517107,8517424,8517837,8518205,8518595,8519018,8519804,8520438,8521078,8521697,8522496,8522930,8523469,8523813,8524265,8524811,8525193,8525577,8526012	8514575,8515307,8515773,8516241,8516825,8517178,8517583,8517991,8518273,8518752,8519365,8520035,8520755,8521401,8522155,8522699,8523173,8523569,8523959,8524588,8524942,8525318,8525756,8528007	
chr6	8528056	8530478	8528085	8529655	+	Cre06.g308050.t1.2	Cre06.g308050.t1.2		8528056,8528307,8528521,8528737,8529230,8529567	8528161,8528379,8528552,8529042,8529356,8530478	
chr6	8530480	8533735	8530825	8533665	-	Cre06.g308100.t1.2	Cre06.g308100.t1.2		8533535,8533100,8532695,8532271,8531939,8531649,8531339,8530480	8533735,8533314,8532800,8532369,8532076,8531680,8531461,8531095	
chr6	8533856	8539799	8533976	8539507	+	DNJ23	Cre06.g308150.t1.2		8533856,8534253,8534800,8535014,8535577,8535990,8536477,8536857,8537282,8537721,8538263,8538700	8534165,8534328,8534873,8535269,8535683,8536091,8536564,8537009,8537325,8537845,8538359,8539799	DnaJ-like protein; contains N-terminal J-domain (pfam226); weak homology with rice Q337D7 and Arabidopsis Q3979, which is annotated as ER-localized, transmembrane protein containing coiled-coil
chr6	8539846	8544177	8540010	8543145	+	Cre06.g308200.t1.1	Cre06.g308200.t1.1		8539846,8540295,8540693,8541394,8541700,8542010,8542459	8540096,8540372,8541018,8541481,8541859,8542094,8544177	
chr6	8544180	8547805	8544600	8547776	-	RPS4	Cre06.g308250.t1.2		8547695,8547453,8546770,8546448,8544981,8544180	8547805,8547529,8546986,8546537,8545121,8544780	Cytosolic 40S small ribosomal subunit protein S4
chr6	8548261	8555295	8548430	8554520	-	Cre06.g308300.t1.2	Cre06.g308300.t1.2		8554298,8553802,8553565,8553130,8552702,8552150,8551836,8551175,8550558,8550223,8549521,8548261	8555295,8553926,8553652,8553247,8552853,8552249,8551969,8551282,8550638,8550372,8549646,8549270	
chr6	8548261	8555325	8548430	8554520	-	Cre06.g308300.t2.1	Cre06.g308300.t2.1		8555095,8554298,8553802,8553565,8553130,8552702,8552150,8551836,8551175,8550558,8550223,8549521,8548261	8555325,8554906,8553926,8553652,8553247,8552853,8552249,8551969,8551282,8550638,8550372,8549646,8549270	
chr6	8556426	8559233	8556549	8558350	+	Cre06.g308350.t1.2	Cre06.g308350.t1.2		8556426,8556720,8557013,8557822,8558337	8556648,8556923,8557563,8557878,8559233	serine/threonine protein phosphatase 2A
chr6	8559391	8563302	8559587	8562591	+	PTN1	Cre06.g308400.t1.2		8559391,8559772,8559999,8560426,8560714,8560900,8561103,8561767	8559606,8559882,8560156,8560569,8560814,8560929,8561629,8563302	Homolog of Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases; antagonizes PI3 kinases to regulate phosphatidyl inositol phosphorylation at 3 position
chr6	8559391	8563302	8559587	8562591	+	PTN1	Cre06.g308400.t2.1		8559391,8559772,8559999,8560426,8560714,8561103,8561767	8559606,8559882,8560156,8560569,8560814,8561629,8563302	Homolog of Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases; antagonizes PI3 kinases to regulate phosphatidyl inositol phosphorylation at 3 position
chr6	8563351	8567832	8563492	8566869	+	Cre06.g308450.t1.2	Cre06.g308450.t1.2		8563351,8564526,8564996,8565286,8565937,8566602	8564071,8564636,8565085,8565423,8566194,8567832	
chr6	8567885	8572305	8567920	8571596	+	CMP2	Cre06.g308500.t1.2		8567885,8568449,8568825,8569805,8570211,8570673,8570922,8571456	8568241,8568563,8569201,8569951,8570300,8570760,8571029,8572305	Putative carbamoyl phosphate synthase (glutamate dependent), small subunit (EC 6.3.5.5); Target-P predicts organelle (weakly mitochondrial) targeting
chr6	8573071	8574622	8573256	8573979	+	PSRP6	Cre06.g308533.t1.1		8573071,8573613,8573947	8573425,8573756,8574622	Chloroplast large ribosomal subunit protein Plastid-Specific Ribosomal Protein 6. This is a different protein from plastid ribosomal protein S6, product of the PRPS6 gene.
chr6	8573192	8574623	8573256	8573979	+	PSRP6	Cre06.g308533.t2.1		8573192,8573613,8573947	8573425,8573756,8574623	Chloroplast large ribosomal subunit protein Plastid-Specific Ribosomal Protein 6. This is a different protein from plastid ribosomal protein S6, product of the PRPS6 gene.
chr6	8574625	8576335	8575284	8576276	-	Cre06.g308600.t1.2	Cre06.g308600.t1.2		8576176,8575958,8575661,8574625	8576335,8576049,8575771,8575443	
chr6	8576382	8581140	8576858	8580989	-	Cre06.g308650.t1.1	Cre06.g308650.t1.1		8580910,8578880,8578402,8577981,8577430,8576382	8581140,8580777,8578634,8578110,8577644,8577126	
chr6	8581195	8587370	8583737	8587056	-	Cre06.g308700.t1.2	Cre06.g308700.t1.2		8587041,8586768,8586529,8586347,8585993,8585736,8584553,8584191,8581195	8587370,8586876,8586588,8586401,8586179,8585826,8585505,8584301,8583962	
chr6	8587641	8591490	8587898	8590711	+	Cre06.g308750.t1.2	Cre06.g308750.t1.2		8587641,8588327,8588591,8588878,8589335,8589858,8590711	8588129,8588405,8588713,8589119,8589571,8590597,8591490	
chr6	8591565	8594550	8592605	8594437	-	EIF3X	Cre06.g308850.t1.2		8594230,8593983,8592974,8591565	8594550,8594080,8593247,8592737	
chr6	8594661	8600532	8594873	8599653	+	TOB55	Cre06.g308900.t1.2		8594661,8595610,8596069,8596548,8596925,8597293,8597868,8598296,8598805,8599459	8595260,8595690,8596221,8596639,8597015,8597596,8597974,8598421,8598895,8600532	Tob55, mediates the insertion of beta-barrel proteins into the outer membrane of mitochondria. Also known as TOM38 or SAM50. Similar to yeast Tob55 (YNL026W) and to Arabidopsis Tob55 (AT5G05520.1).
chr6	8600681	8604262	8600947	8603433	+	Cre06.g308950.t1.2	Cre06.g308950.t1.2		8600681,8601136,8601399,8601707,8602045,8602695,8603023,8603378	8601002,8601212,8601502,8601807,8602094,8602764,8603140,8604262	
chr6	8604782	8607670	8605594	8607599	-	NAR1.2	Cre06.g309000.t1.2		8607460,8607235,8606733,8606389,8605924,8604782	8607670,8607368,8606869,8606543,8606191,8605772	Nitrite transporter-homologue, possibly chloroplastic [PMID: 11912227, AY612639]; significant similarities with two anion transporters, the chloroplastic nitrite transporter NAR1 and formate transporters in bacteria. LCIA Induced by CO2-limiting stress but not regulated by nitrogen species through CCM1 [PMID: 15235119]
chr6	8612962	8617370	8613996	8617030	-	NOT2	Cre06.g309050.t1.2		8617226,8616942,8616820,8616640,8615065,8614608,8612962	8617370,8617052,8616862,8616742,8616454,8614714,8614431	putative homolog of not2 in yeast: general negative regulator of transcription subunit 2. Volvox ortholog, 127435
chr6	8619531	8626902	8619697	8626113	+	CPN60C	Cre06.g309100.t1.2		8619531,8619936,8620399,8620868,8621538,8622166,8622542,8622982,8623616,8623867,8624490,8624836,8625174,8625586,8625981	8619751,8620064,8620470,8620955,8621713,8622291,8622663,8623111,8623696,8623926,8624617,8624990,8625283,8625738,8626902	GroEL/HSP60-homolog, targeted to mitochondria; forms stacks of two homo-oligomeric heptameric rings; Cpn60s require mitochondrial Cpn10s to fold non-native proteins to the native state in an ATP-consuming process; PMID: 16143837
chr6	8626905	8629703	8627295	8629568	-	ROC56	Cre06.g309150.t1.2		8629559,8629233,8628813,8628367,8627769,8626905	8629703,8629350,8628919,8628458,8628079,8627501	Zinc-finger containing protein involved in circadian rhythms;  in Matsuo et al. (2008), roc56 (rhythm of chloroplast) circadian rhythm mutant locus maps here
chr6	8629891	8633232	8629983	8631973	+	Cre06.g309200.t1.2	Cre06.g309200.t1.2		8629891	8633232	
chr6	8639306	8643520	8639544	8643392	-	Cre06.g309300.t1.2	Cre06.g309300.t1.2		8642937,8642253,8641895,8641622,8641024,8640481,8640223,8639973,8639306	8643520,8642343,8642008,8641660,8641388,8640619,8640285,8640023,8639739	
chr6	8643651	8646524	8643752	8645577	+	ERD2C	Cre06.g309350.t1.2		8643651,8644399,8645032,8645466	8644138,8644574,8645105,8646524	Hypothetical Conserved Protein. Has similarity to ERD2/KDEL receptor, proteins involved in ER retention of lumenal proteins.
chr6	8651014	8656670	8652006	8655800	-	Cre06.g309450.t1.2	Cre06.g309450.t1.2		8656065,8655231,8654994,8654640,8654239,8653809,8653593,8653243,8652920,8652538,8651014	8656670,8655816,8655099,8654768,8654368,8653927,8653694,8653397,8653003,8652721,8652324	
chr6	8656771	8662122	8657325	8661990	+	OPR28	Cre06.g309500.t1.1		8656771,8657255,8658417,8659742,8660190,8660417,8660952	8657148,8658263,8659379,8659894,8660297,8660810,8662122	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 95 codons at 5'-end: MEARAAPSFMDAGPSGRPPPVWPSPRRAWQAIAAAAVRPQPGRRRGQALALHMIGAEAQLHAASCPARNGLGRRQRGGVAVVTCGSGAPAHAASG
chr6	8662125	8670223	8663054	8670084	-	Cre06.g309550.t1.1	Cre06.g309550.t1.1		8669877,8669646,8669325,8669077,8668878,8668423,8668013,8667860,8667425,8666726,8666441,8666098,8665808,8665447,8665178,8664733,8664479,8664150,8663900,8663654,8663309,8662125	8670223,8669741,8669370,8669125,8668920,8668522,8668103,8667876,8667493,8666925,8666491,8666233,8665897,8665539,8665275,8664946,8664579,8664267,8663926,8663769,8663514,8663109	
chr6	8662125	8670223	8663054	8670084	-	Cre06.g309550.t2.1	Cre06.g309550.t2.1		8669877,8669646,8669325,8669077,8668878,8668423,8668017,8667860,8667425,8666726,8666441,8666098,8665808,8665447,8665178,8664733,8664479,8664150,8663900,8663654,8663309,8662125	8670223,8669741,8669370,8669125,8668920,8668522,8668103,8667876,8667482,8666925,8666491,8666233,8665897,8665539,8665275,8664946,8664579,8664267,8663926,8663769,8663514,8663109	
chr6	8670761	8675093	8670843	8674368	+	Cre06.g309600.t1.1	Cre06.g309600.t1.1		8670761,8671122,8671320,8671507,8671811,8672121	8670968,8671218,8671400,8671575,8671951,8675093	
chr6	8675165	8696730	8676260	8696573	-	Cre06.g309650.t1.1	Cre06.g309650.t1.1		8696265,8695997,8695712,8695397,8694858,8693899,8693400,8693038,8692705,8692481,8692160,8691861,8691569,8691388,8691175,8690846,8690469,8690188,8689983,8689737,8689272,8689006,8688700,8688130,8687914,8687644,8687421,8686906,8686116,8685798,8685447,8685094,8684846,8684083,8683686,8683191,8682946,8682639,8682024,8681504,8680807,8680053,8679524,8679278,8678808,8678548,8678191,8677725,8675165	8696730,8696072,8695807,8695499,8695187,8694715,8693724,8693242,8692789,8692575,8692249,8691956,8691679,8691419,8691226,8691022,8690675,8690268,8690057,8689841,8689532,8689090,8688875,8688421,8687969,8687730,8687507,8687229,8686288,8685987,8685609,8685320,8684944,8684716,8683930,8683480,8683018,8682806,8682403,8681847,8681288,8680536,8679813,8679364,8678977,8678590,8678368,8678001,8677472	
chr6	8675165	8696730	8676260	8696573	-	Cre06.g309650.t2.1	Cre06.g309650.t2.1		8696265,8695997,8695712,8695397,8694858,8693899,8693400,8693038,8692705,8692481,8692160,8691861,8691569,8691388,8691175,8690846,8690469,8690188,8689983,8689737,8689284,8689006,8688700,8688130,8687914,8687644,8687421,8686906,8686116,8685798,8685447,8685094,8684846,8684083,8683686,8683191,8682946,8682639,8682024,8681504,8680807,8680053,8679524,8679278,8678808,8678548,8678191,8677725,8675165	8696730,8696072,8695807,8695499,8695187,8694715,8693724,8693242,8692789,8692575,8692249,8691956,8691679,8691419,8691226,8691022,8690675,8690268,8690057,8689841,8689532,8689090,8688875,8688421,8687969,8687730,8687507,8687229,8686288,8685987,8685609,8685320,8684944,8684716,8683930,8683480,8683018,8682806,8682403,8681847,8681288,8680536,8679813,8679364,8678977,8678590,8678368,8678001,8677472	
chr6	8696795	8699740	8697202	8698773	-	Cre06.g309684.t1.1	Cre06.g309684.t1.1		8699486,8698700,8698138,8696795	8699740,8698955,8698606,8697764	
chr6	8699847	8703120	8700501	8703022	-	Cre06.g309717.t1.1	Cre06.g309717.t1.1		8702911,8702630,8702244,8701982,8701523,8700776,8699847	8703120,8702730,8702337,8702056,8701768,8701108,8700579	
chr6	8703231	8709922	8704182	8709433	+	Cre06.g309750.t1.2	Cre06.g309750.t1.2		8703231,8703704,8704499,8704805,8705073,8705473	8703448,8704305,8704618,8704915,8705303,8709922	
chr6	8709925	8739930	8711164	8739853	-	MOT2	Cre06.g309800.t1.1		8739790,8739176,8738649,8738276,8737570,8737349,8737123,8736532,8736322,8735946,8735371,8735151,8734806,8734432,8734128,8733863,8733573,8733234,8732762,8728484,8728104,8727834,8727506,8727275,8726872,8726665,8726456,8726188,8725809,8725436,8725190,8724929,8724465,8724115,8723735,8723305,8722535,8722015,8721382,8720540,8720289,8719540,8719203,8718812,8718112,8717634,8716905,8716321,8715773,8715238,8714693,8714458,8714148,8713650,8709925	8739930,8739560,8738893,8738404,8738045,8737385,8737181,8736800,8736366,8736012,8735812,8735186,8734854,8734602,8734238,8733939,8733662,8733324,8732956,8732563,8728185,8727928,8727595,8727373,8726978,8726716,8726542,8726280,8726012,8725519,8725273,8725024,8724731,8724199,8723910,8723596,8723094,8722374,8721837,8721187,8720358,8720128,8719275,8718979,8718549,8717922,8717354,8716738,8716023,8715422,8715057,8714503,8714325,8713926,8713321	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr6	8740033	8742670	8740575	8741966	-	Cre06.g309826.t1.1	Cre06.g309826.t1.1		8741744,8741069,8740907,8740033	8742670,8741193,8740994,8740596	
chr6	8744158	8745996	8745146	8745942	-	Cre06.g309850.t1.1	Cre06.g309850.t1.1		8745884,8745447,8744158	8745996,8745702,8745150	
chr6	8744158	8745996	8745146	8745677	-	Cre06.g309850.t2.1	Cre06.g309850.t2.1		8745447,8744158	8745996,8745150	
chr6	8747211	8752356	8747952	8752063	-	MST2	Cre06.g309900.t1.2		8751936,8751500,8750952,8750014,8749332,8747211	8752356,8751877,8751261,8750678,8749638,8748952	Sequence similarity to mastigoneme protein (MST1)
chr6	8753600	8784826	8754590	8784046	-	Cre06.g309951.t1.1	Cre06.g309951.t1.1		8784610,8782420,8781925,8781091,8780097,8779527,8779166,8778158,8772326,8771604,8770534,8769921,8769445,8769091,8768693,8768188,8767931,8767622,8767277,8766992,8766593,8766310,8766059,8765661,8765231,8761357,8760921,8757093,8756711,8753600	8784826,8784334,8782180,8781701,8780753,8779776,8779344,8779004,8777317,8772202,8771496,8770319,8769744,8769215,8768933,8768472,8768068,8767810,8767474,8767147,8766847,8766461,8766145,8765934,8765506,8765055,8761237,8760751,8756958,8756579	
chr6	8784937	8792588	8785030	8792123	+	AP4E1	Cre06.g310000.t1.2		8784937,8785316,8785749,8786326,8786983,8787342,8787725,8788156,8788771,8789099,8789511,8789997,8790617,8790984	8785129,8785534,8785854,8786543,8787090,8787404,8787911,8788295,8788842,8789173,8789774,8790325,8790807,8792588	Hypothetical Conserved Protein. Epsilon-Adaptin. Clathrin Adaptor Complex Large Subunit, putative member of AP-4 complex
chr6	8792727	8795858	8792825	8795061	+	CPL13	Cre06.g310050.t1.1		8792727,8793533,8794058,8794386,8795028	8793269,8793802,8794153,8794661,8795858	
chr6	8795881	8802775	8797031	8802570	-	Cre06.g310100.t1.2	Cre06.g310100.t1.2		8802258,8802077,8801788,8801590,8801074,8800575,8800305,8800027,8799540,8799060,8798743,8798476,8798209,8798033,8797783,8795881	8802775,8802192,8802005,8801695,8801320,8800730,8800418,8800176,8799782,8799238,8798899,8798628,8798300,8798113,8797901,8797645	null-allele mutant was isolated (PMID 29743196)
chr6	8804591	8807266	8806341	8806948	-	Cre06.g310150.t1.2	Cre06.g310150.t1.2		8806902,8806765,8804591	8807266,8806821,8806661	
chr6	8805512	8807266	8806341	8806948	-	Cre06.g310150.t2.1	Cre06.g310150.t2.1		8806902,8806765,8805512	8807266,8806821,8806661	
chr6	8809837	8812473	8810553	8811795	+	Cre06.g310200.t1.2	Cre06.g310200.t1.2		8809837,8810872	8810671,8812473	
chr6	8813751	8816046	8814674	8815416	-	Cre06.g310250.t1.2	Cre06.g310250.t1.2		8814856,8813751	8816046,8814674	
chr6	8816202	8817346	8817051	8817319	-	Cre06.g310276.t1.1	Cre06.g310276.t1.1		8816202	8817346	
chr6	8817401	8819201	8817610	8818551	-	Cre06.g310300.t1.2	Cre06.g310300.t1.2		8818024,8817401	8819201,8817610	
chr6	8819654	8823516	8820815	8823170	-	Cre06.g310350.t1.2	Cre06.g310350.t1.2		8823081,8822739,8822448,8822144,8821656,8821193,8819654	8823516,8823006,8822489,8822303,8821786,8821324,8820893	
chr6	8823619	8828428	8823811	8827641	+	Cre06.g310400.t1.1	Cre06.g310400.t1.1		8823619,8824230,8824794,8825197,8825573,8825803,8826655,8827054,8827416	8823974,8824643,8824937,8825357,8825631,8826459,8826926,8827211,8828428	
chr6	8828477	8832779	8828638	8831371	+	Cre06.g310450.t1.2	Cre06.g310450.t1.2		8828477,8828835,8829052,8829377,8829771,8830023,8830495,8830846	8828716,8828903,8829138,8829544,8829800,8830250,8830656,8832779	
chr6	8832781	8837556	8834822	8837149	-	Cre06.g310500.t1.2	Cre06.g310500.t1.2		8837385,8836709,8836406,8835064,8832781	8837556,8837264,8836506,8836077,8834854	Def HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor - bZIP transcription factor family protein / HY5-like protein (HYH), nearly identical to HY5-like protein (Arabidopsis thaliana) GI:1842111; similar to TGACG-motif binding factor GI:2934
chr6	8837717	8838188	8837801	8838030	+	Cre06.g310545.t1.2	Cre06.g310545.t1.2		8837717	8838188	
chr6	8838251	8839746	8838798	8839534	-	HY5	Cre06.g310550.t1.2		8839522,8838251	8839746,8839191	def HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor  / HY5-like protein (HYH), nearly identical to HY5-like protein (Arabidopsis thaliana) GI:18042111; similar to TGACG-motif binding factor GI:2934884 from (Glycine max); contains Pfam profile: PF00170 bZIP transcription factor The similarity is strong but only in this small domain region
chr6	8841427	8842829	8841484	8841865	+	Cre06.g310576.t1.1	Cre06.g310576.t1.1		8841427,8841815	8841731,8842829	
chr6	8844497	8849788	8844542	8848819	+	Cre06.g310601.t1.1	Cre06.g310601.t1.1		8844497,8846224	8846009,8849788	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr6	8844497	8846608	8844542	8846589	+	Cre06.g310601.t2.1	Cre06.g310601.t2.1		8844497,8846224,8846556	8846009,8846478,8846608	Has a putative transposase DNA-binding domain containing four conserved cysteines suggestive of a zinc binding domain.
chr6	8849851	8856563	8850700	8855570	-	Cre06.g310650.t1.2	Cre06.g310650.t1.2		8855988,8855501,8853972,8853509,8853162,8852195,8851732,8849851	8856563,8855720,8855198,8853604,8853239,8852314,8851839,8851150	
chr6	8856657	8859173	8856738	8859128	+	RPL36A	Cre06.g310700.t1.2		8856657,8856851,8857272,8858809,8859080	8856741,8856956,8857339,8858883,8859173	component of cytosolic 80S ribosome and 60S large subunit; this gene has also been annotated as RPL41 (according to the nomenclature used for the yeast ribosomal subunits) and shown to be the site of the cycloheximide resistance mutation ACT2. See PMID: 11254126.   Cytosolic 80S ribosomal protein L36a
chr6	8856667	8859173	8856901	8859128	+	RPL36A	Cre06.g310700.t2.1		8856667,8856851,8857272,8858809,8859080	8856741,8856956,8857339,8858883,8859173	component of cytosolic 80S ribosome and 60S large subunit; this gene has also been annotated as RPL41 (according to the nomenclature used for the yeast ribosomal subunits) and shown to be the site of the cycloheximide resistance mutation ACT2. See PMID: 11254126.   Cytosolic 80S ribosomal protein L36a
chr6	8859211	8865131	8860463	8865006	-	COPG1	Cre06.g310750.t1.2		8864930,8864755,8864631,8863357,8862884,8862556,8862106,8861713,8861392,8861154,8860849,8859211	8865131,8864852,8864681,8864554,8863074,8862708,8862288,8861883,8861526,8861231,8860971,8860706	Expressed Protein. Gamma-COP. Subunit of COP-I complex involved in vesicle trafficking.
chr6	8865681	8873616	8866292	8873516	-	Cre06.g310800.t1.1	Cre06.g310800.t1.1		8873304,8873126,8872457,8871211,8865681	8873616,8873201,8873005,8872269,8871071	
chr6	8873667	8876456	8874681	8876352	-	Cre06.g310850.t1.2	Cre06.g310850.t1.2		8876178,8875648,8875356,8873667	8876456,8875890,8875462,8875180	
chr6	8876506	8879014	8876970	8878783	-	Cre06.g310900.t1.2	Cre06.g310900.t1.2		8878778,8878570,8878240,8877833,8877404,8876506	8879014,8878690,8878356,8878039,8877543,8877154	
chr6	8879001	8884766	8880121	8884081	-	Cre06.g310950.t1.2	Cre06.g310950.t1.2		8884632,8883802,8883584,8883201,8882900,8882247,8882042,8881627,8881209,8880562,8879001	8884766,8884167,8883654,8883330,8882995,8882630,8882092,8881750,8881287,8880850,8880322	FAD-dependent oxidoreductase, probably a sarcosine dehydrogenase/oxidase
chr6	8884927	8891650	8885257	8890370	+	FBT2	Cre06.g311000.t1.1		8884927,8885484,8885789,8886109,8886502,8888066,8888587,8888884,8890025	8885308,8885555,8885915,8886254,8887776,8888260,8888709,8889501,8891650	belongs to BT1-family of transporters (also known as FBT) involved in folate/pteridine transport (PMID: 16162503); most closely related to the chloroplast folate transporter At2g32040
chr6	8891697	8896978	8891705	8896672	+	Cre06.g311050.t1.2	Cre06.g311050.t1.2		8891697,8892076,8892425,8892822,8893199,8893635,8893928,8894149,8894442,8894847,8895190,8895645,8896672	8891917,8892187,8892532,8892891,8893257,8893683,8893988,8894179,8894522,8894933,8895302,8896507,8896978	
chr6	8897087	8899298	8897340	8898860	+	Cre06.g311100.t1.2	Cre06.g311100.t1.2		8897087,8897858	8897562,8899298	
chr6	8899342	8904896	8899802	8904644	-	MFT20	Cre06.g311150.t1.1		8903792,8903522,8903147,8902758,8901747,8901400,8901033,8900583,8900274,8900043,8899342	8904896,8903644,8903242,8902884,8902597,8901600,8901255,8900711,8900347,8900117,8899832	Similar to MFS-1 sugar transporter with Spinster-like transmembrane topology
chr6	8905037	8909518	8905177	8909104	+	MFT21	Cre06.g311200.t1.1		8905037,8905770,8906102,8906417,8906718,8907215,8907677,8907945,8908180,8908615,8908872,8909101	8905540,8905865,8906228,8906533,8907067,8907415,8907797,8908052,8908362,8908688,8908946,8909518	Similar to MFS-1 sugar transporter with Spinster-like transmembrane topology; null-allele mutant was isolated (PMID 29743196)
chr6	8909627	8925348	8909756	8925172	+	Cre06.g311250.t1.1	Cre06.g311250.t1.1		8909627,8912452,8914127,8917853,8921838,8922219,8922576,8922932,8923242,8923559,8923868,8924201,8924749	8912256,8913961,8917726,8921670,8921944,8922420,8922715,8923003,8923385,8923683,8924021,8924557,8925348	
chr6	8925358	8927776	8926329	8927260	-	Cre06.g311300.t1.1	Cre06.g311300.t1.1		8926686,8925358	8927776,8926505	
chr6	8928333	8931465	8929487	8930997	-	Cre06.g311350.t1.1	Cre06.g311350.t1.1		8930945,8930769,8929882,8928333	8931465,8930811,8930474,8929690	
chr6	8931530	8939945	8932287	8939821	-	Cre06.g311400.t1.2	Cre06.g311400.t1.2		8939680,8938776,8938519,8938157,8937817,8937446,8936490,8935995,8935010,8934464,8934103,8933800,8933297,8932739,8931530	8939945,8939531,8938617,8938272,8937927,8937593,8937306,8936254,8935783,8934685,8934285,8933912,8933473,8932995,8932436	Rad1/XPF homolog [PMID: 17992532]
chr6	8940106	8960560	8940281	8960209	+	Cre06.g311450.t1.1	Cre06.g311450.t1.1		8940106,8940435,8940928,8942116,8942687,8943256,8943496,8943870,8944325,8945225,8945612,8946128,8946635,8947666,8948501,8948811,8949201,8950021,8950446,8950768,8951831,8952699,8953026,8953572,8954218,8954681,8955742,8956430,8956698,8957131,8958434,8959025,8959993	8940339,8940649,8941949,8942448,8943110,8943305,8943670,8944055,8944983,8945315,8945885,8946369,8946878,8948228,8948664,8948972,8949831,8950235,8950588,8951639,8952225,8952897,8953350,8953957,8954453,8955167,8956258,8956562,8956968,8958219,8958766,8959768,8960560	null-allele mutant was isolated (PMID 29743196)
chr6	8960626	8967787	8960955	8965526	+	Cre06.g311500.t1.1	Cre06.g311500.t1.1		8960626,8961419,8961813,8962033,8962322,8962545,8962863,8964084,8964354,8964902	8961246,8961591,8961847,8962183,8962402,8962686,8963834,8964211,8964744,8967787	
chr6	8969890	8975255	8972067	8974868	-	Cre06.g311550.t1.1	Cre06.g311550.t1.1		8974978,8974799,8969890	8975255,8974874,8974641	
chr6	8977056	8980797	8977109	8980348	+	RFK3	Cre06.g311600.t1.2		8977056,8977284,8977494,8977814,8978051,8978395,8978931,8979179,8979432,8980203	8977188,8977367,8977531,8977878,8978237,8978769,8979053,8979259,8979520,8980797	Riboflavin kinase/FMN hydrolase
chr6	8980800	8989215	8981347	8988811	-	IRK1	Cre06.g311650.t1.1		8988991,8988590,8988368,8988072,8987798,8987585,8986135,8985678,8985241,8984604,8984159,8983912,8983533,8983223,8982744,8982064,8981732,8980800	8989215,8988865,8988441,8988183,8987877,8987652,8986262,8985801,8985345,8985011,8984265,8984026,8983601,8983393,8983043,8982523,8981916,8981560	Putative inward rectifier K+ channel TC# 1.A.2
chr6	8991325	8993475	8991987	8993337	-	FAP349	Cre06.g311700.t1.2		8993081,8992765,8992438,8991325	8993475,8992928,8992542,8992095	
chr6	8993580	8998223	8994533	8997961	-	Cre06.g311750.t1.1	Cre06.g311750.t1.1		8997484,8997097,8996625,8996425,8995716,8995362,8993580	8998223,8997319,8996866,8996469,8996311,8995566,8995148	
chr6	8998356	9000627	8998409	8999747	+	Cre06.g311800.t1.1	Cre06.g311800.t1.1		8998356,8998864	8998654,9000627	
chr6	9000640	9003265	9001083	9003195	-	HAD1	Cre06.g311850.t1.1		9003164,9003002,9002873,9002596,9002399,9002102,9001819,9001574,9001435,9000640	9003265,9003072,9002927,9002615,9002431,9002224,9001894,9001708,9001484,9001236	
chr6	9003318	9005595	9003908	9005457	-	RAB7	Cre06.g311900.t1.2		9005404,9005163,9004920,9004503,9004167,9003318	9005595,9005289,9005066,9004583,9004312,9003975	Possible hydrolase; shows homology to haloacid dehalogenases, possible phosphatase; Similar to mammalian Rab7; two unique peptides
chr6	9005696	9011607	9005891	9011111	+	ELG3	Cre06.g311950.t1.1		9005696,9006044,9006398,9006817,9007396,9007630,9007996,9008302,9008670,9009085,9009304,9009510,9009817,9010092,9010518,9010876	9005972,9006143,9006619,9006966,9007526,9007733,9008171,9008506,9008890,9009163,9009368,9009679,9009953,9010234,9010746,9011607	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr7	5256	8087	5294	5532	+	Cre07.g312002.t1.1	Cre07.g312002.t1.1		5256	8087	
chr7	17770	21745	18778	21581	-	Cre07.g312050.t1.1	Cre07.g312050.t1.1		21180,20884,20640,20415,20134,19610,17770	21745,21043,20735,20514,20288,19875,19496	
chr7	21856	25187	21936	24728	+	Cre07.g312100.t1.1	Cre07.g312100.t1.1		21856,22238,22830,23405,23845,24266	22101,22654,23221,23565,24158,25187	
chr7	28885	35695	29491	35328	-	Cre07.g312150.t1.1	Cre07.g312150.t1.1		35208,34680,34545,33776,33308,33019,32601,31866,31636,31419,30929,30536,30159,29801,28885	35695,35080,34569,34149,33665,33102,32706,32461,31745,31479,31007,30792,30435,29976,29683	
chr7	41870	43555	41930	43391	-	Cre07.g312250.t1.1	Cre07.g312250.t1.1		42641,42486,42252,41870	43555,42536,42355,42081	
chr7	43666	46017	43726	44791	+	Cre07.g312300.t1.2	Cre07.g312300.t1.2		43666,44083,44211,44539	43810,44130,44342,46017	
chr7	46020	51715	46439	51486	-	POLA4	Cre07.g312350.t1.1		51479,51375,51222,51069,50889,50661,50361,49282,48952,48735,48517,48183,47745,46020	51715,51413,51266,51119,50986,50763,50491,49379,49111,48843,48599,48326,47897,46634	Homologous to eukaryotic DNA polymerase alpha subunit 4 (primase). ts-lethal mutations block in S/M (PMID 25336509)
chr7	51816	62033	51989	61850	+	KDG1	Cre07.g312400.t1.1		51816,52492,53082,53565,53986,54156,54415,55179,55872,56178,56545,56826,56989,57257,57432,57584,57836,57993,58113,58600,58907,60632,61850	52267,52870,53384,53717,54032,54261,55074,55664,56018,56454,56702,56894,57054,57316,57491,57628,57877,58038,58455,58672,59038,61552,62033	diacylglycerol kinase similar to that of Oryza sativa XP_468760 (EC 2.7.1.107)
chr7	62063	65285	64320	65189	-	Cre07.g312500.t1.2	Cre07.g312500.t1.2		65123,64831,64538,62063	65285,64908,64711,64371	
chr7	65436	68257	65877	68217	+	Cre07.g312550.t1.1	Cre07.g312550.t1.1		65436,66616	66160,68257	
chr7	69656	71509	69739	70115	+	Cre07.g312580.t1.2	Cre07.g312580.t1.2		69656,70092	69881,71509	
chr7	71780	73915	72286	73241	-	Cre07.g312600.t1.2	Cre07.g312600.t1.2		73401,72482,71780	73915,73248,72388	
chr7	71780	73915	72286	73241	-	Cre07.g312600.t2.1	Cre07.g312600.t2.1		73401,72482,71780	73915,73311,72388	
chr7	77266	79327	77405	77900	+	Cre07.g312650.t1.2	Cre07.g312650.t1.2		77266,77896	77779,79327	
chr7	82530	89185	83244	88420	-	Cre07.g312701.t1.1	Cre07.g312701.t1.1		88168,87833,84006,82530	89185,88020,87699,83508	
chr7	90060	92548	90831	92280	-	CSL4	Cre07.g312750.t1.2		92223,92053,91622,91397,91161,90060	92548,92154,91785,91478,91248,90935	Putative homolog of Csl4, core component of the exosome. Association w/ exosome mediated by interactions with ribosomal RNA-processing proteins 41 and 42.
chr7	92702	97841	93262	96745	+	Cre07.g312800.t1.1	Cre07.g312800.t1.1		92702,93206,93780,95089,95513,95892,96466	92930,93661,94930,95258,95754,96260,97841	
chr7	92702	97841	93262	96745	+	Cre07.g312800.t2.1	Cre07.g312800.t2.1		92702,93206,93780,95089,95513,95892,96466	92922,93661,94930,95258,95754,96260,97841	
chr7	98198	99305	98702	99189	-	Cre07.g312817.t1.1	Cre07.g312817.t1.1		99012,98198	99305,98867	
chr7	99696	100497	99780	100255	+	Cre07.g312833.t1.1	Cre07.g312833.t1.1		99696,100093	99948,100497	
chr7	100590	103015	101117	102230	-	Cre07.g312850.t1.2	Cre07.g312850.t1.2		102741,101678,100590	103015,102340,101483	
chr7	103126	112807	103206	112185	+	Cre07.g312900.t1.1	Cre07.g312900.t1.1		103126,103790,103936,104222,104481,104830,105013,105336,105651,106298,106772,107329,108583,109655,110719,111045,111395,111678,111965	103710,103827,104017,104359,104663,104892,105183,105458,106133,106655,107179,108459,109523,110522,110898,111210,111526,111818,112807	
chr7	112810	114185	113590	114057	-	HEL32	Cre07.g312950.t1.1		113842,112810	114185,113741	
chr7	114240	121665	114439	121525	-	Cre07.g313000.t1.1	Cre07.g313000.t1.1		120929,120600,120334,119679,119340,118930,118477,118251,117925,117566,117085,116888,116601,116294,116088,115615,115328,114998,114240	121665,120726,120539,120027,119507,119109,118507,118318,118008,117677,117454,116936,116717,116329,116132,115683,115384,115120,114799	
chr7	122220	124315	122959	124049	-	Cre07.g313050.t1.1	Cre07.g313050.t1.1		124159,123878,122220	124315,124050,123673	
chr7	124426	130033	125023	128432	+	Cre07.g313100.t1.1	Cre07.g313100.t1.1		124426,124980,127548,128161	124836,127243,127669,130033	
chr7	130406	139716	130553	139342	+	Cre07.g313122.t1.1	Cre07.g313122.t1.1		130406,131041,131808,131995,132336,132634,132819,133148,133488,133878,134238,134539,134797,135156,135461,136275,136666,137065,137434,137721,137938,138240,138446,138666,138870,139263	130782,131258,131816,132112,132431,132671,132991,133295,133597,133989,134323,134593,134933,135269,135861,136372,136794,137217,137565,137793,138075,138292,138504,138762,138988,139716	
chr7	139724	143905	140350	143796	-	Cre07.g313143.t1.1	Cre07.g313143.t1.1		143741,143474,142454,141446,141158,140826,140593,139724	143905,143613,143369,142305,141303,141006,140688,140458	
chr7	144046	149097	144240	148340	+	Cre07.g313164.t1.1	Cre07.g313164.t1.1		144046,144460,144760,145265,145648,145926,146241,146620,146938,147501,148020	144310,144545,145110,145387,145699,146029,146388,146677,147195,147661,149097	
chr7	149100	151191	149877	150984	-	Cre07.g313185.t1.1	Cre07.g313185.t1.1		150941,150686,150217,149100	151191,150866,150319,149973	
chr7	151386	160267	151506	159952	+	Cre07.g313206.t1.1	Cre07.g313206.t1.1		151386,152578,153032,153695,154213,154932,155306,155767,156296,156535,157291,158107,158347,158644,158891,159571	152487,152783,153515,153940,154617,154962,155592,156060,156410,157130,157821,158151,158421,158700,159373,160267	
chr7	151386	160647	151506	159952	+	Cre07.g313206.t2.1	Cre07.g313206.t2.1		151386,152578,153032,153695,154213,154932,155306,155767,156296,156535,157291,158107,158347,158644,158891,159571	152487,152783,153515,153940,154617,154962,155592,156060,156410,157130,157821,158151,158421,158700,159373,160647	
chr7	161194	167407	162291	166998	-	Cre07.g313250.t1.2	Cre07.g313250.t1.2		166884,166316,165970,165519,165153,164773,164250,163933,163545,163147,162692,161194	167407,166417,166116,165671,165290,164914,164482,164066,163684,163330,162933,162428	
chr7	167457	172297	168894	172100	-	Cre07.g313302.t1.1	Cre07.g313302.t1.1		172010,171542,170924,170551,169797,169294,167457	172297,171784,171057,170582,170155,169422,169068	
chr7	172418	177779	172519	177549	+	Cre07.g313350.t1.2	Cre07.g313350.t1.2		172418,172941,173453,173820,174353,174807,175313,175595,176479,176876	172732,173120,173665,174038,174666,174978,175386,176135,176669,177779	
chr7	177793	183727	178207	183467	-	Cre07.g313400.t1.1	Cre07.g313400.t1.1		183437,182547,181432,180287,177793	183727,183267,182319,180421,179832	
chr7	177793	183727	178207	183467	-	Cre07.g313400.t2.1	Cre07.g313400.t2.1		183437,182547,181432,177793	183727,183267,182319,179832	
chr7	183792	188297	184462	188094	-	Cre07.g313450.t1.2	Cre07.g313450.t1.2		187515,187139,186807,186445,186114,185779,185527,184901,183792	188297,187188,186951,186514,186238,185908,185558,185074,184582	
chr7	188398	202939	188643	202462	+	Cre07.g313500.t1.2	Cre07.g313500.t1.2		188398,188974,190373,190697,191100,192803,194186,194410,195101,195492,196033,196597,197220,197611,197891,198404,198905,199294,199745,200121,201341,202088	188827,190235,190510,190961,192656,194067,194294,194883,195229,195778,196248,196785,197283,197676,197979,198751,199101,199513,199924,201213,201955,202939	
chr7	202988	206959	203172	206500	+	Cre07.g313550.t1.1	Cre07.g313550.t1.1		202988,203168,203463,203996,204355,204773,205416,205852,206392	203055,203213,203571,204087,204448,204952,205601,205929,206959	
chr7	207352	210217	207383	210125	-	CGL33A	Cre07.g313600.t1.2		210089,209727,209341,208783,208557,208252,207782,207352	210217,209799,209393,208946,208632,208362,207989,207613	Conserved in the Green Lineage
chr7	210401	224967	211517	224708	-	Cre07.g313650.t1.1	Cre07.g313650.t1.1		224523,223982,223578,223289,222434,221663,221278,220781,220038,219770,217157,217043,216605,213570,213178,212978,212484,212195,210401	224967,224072,223691,223438,223114,222256,221490,221059,220600,219854,219472,217069,216823,216434,213402,213016,212732,212277,211995	
chr7	210401	224967	211517	224708	-	Cre07.g313650.t2.1	Cre07.g313650.t2.1		224523,223982,223578,223289,222434,221663,221278,220781,220038,219770,217157,216605,213570,213178,212978,212484,212195,210401	224967,224072,223691,223438,223114,222256,221490,221059,220600,219854,219472,216823,216434,213402,213016,212732,212277,211995	
chr7	225128	231247	225894	231216	-	TSE2	Cre07.g313700.t1.1		231135,231015,230862,230599,230196,229512,229213,228750,228034,227688,227192,226677,226306,225128	231247,231031,230937,230711,230287,229644,229257,228837,228191,227813,227372,226832,226494,226122	Similar to GluRS (EARS, gltX)
chr7	231302	236157	231602	235986	-	Cre07.g313750.t1.1	Cre07.g313750.t1.1		235967,235468,234265,233167,231302	236157,235829,235306,234096,233017	
chr7	236221	238177	237203	238086	-	CGL138	Cre07.g313800.t1.2		238054,237741,237537,236221	238177,237843,237579,237358	
chr7	238229	249907	238805	249644	-	Cre07.g313850.t1.1	Cre07.g313850.t1.1		249626,249480,249048,248617,248203,247876,247531,246977,246631,246085,245485,244133,243799,243399,243060,242636,242159,241781,241183,240875,240366,239261,238229	249907,249522,249193,248710,248275,247975,247640,247244,246744,246284,245596,244330,243867,243476,243187,242762,242353,241849,241473,240952,240674,240196,238979	
chr7	250243	256177	251293	255928	-	Cre07.g313900.t1.1	Cre07.g313900.t1.1		255787,255540,254146,253708,250243	256177,255617,254553,253939,253557	
chr7	256232	263217	257035	263101	-	Cre07.g313950.t1.1	Cre07.g313950.t1.1		262686,261975,261663,261086,260819,260583,260040,259712,259355,259072,258623,258189,256232	263217,262060,261782,261519,260901,260659,260132,259782,259469,259159,258774,258266,257779	
chr7	263338	267218	263854	266692	+	Cre07.g314000.t1.1	Cre07.g314000.t1.1		263338,264706,265202,265424,265964,266240,266564	264339,265021,265252,265653,266053,266352,267218	
chr7	268522	280697	269580	280396	-	Cre07.g314050.t1.1	Cre07.g314050.t1.1		280159,279700,279236,278467,278123,277721,277451,277183,276864,274790,274451,274242,273877,273487,273066,272427,272096,271651,271263,270930,268522	280697,280040,279510,279035,278235,277910,277600,277259,277041,276663,274543,274289,274081,273712,273304,272804,272215,271836,271334,271016,270714	
chr7	280803	283238	281447	282986	-	Cre07.g314100.t1.2	Cre07.g314100.t1.2		282896,282148,280803	283238,282438,281927	
chr7	283372	289717	283445	288896	+	ZDS1	Cre07.g314150.t1.2		283372,283626,284043,284396,284852,285229,286176,286630,287024,287435,287747,288136,288407,288764	283542,283750,284122,284480,284938,285325,286388,286825,287192,287518,287893,288207,288571,289717	Zeta-carotene desaturase (carotene 7,8-desaturase), chloroplast precursor.  Previously annotated as ZDS
chr7	291372	297390	292356	297264	-	Cre07.g314200.t1.1	Cre07.g314200.t1.1		296939,296396,295850,295438,294531,294268,293984,293174,292699,292472,291372	297390,296449,296005,295644,295282,294366,294079,293786,292994,292580,292356	
chr7	297558	302409	297701	301610	+	Cre07.g314250.t1.1	Cre07.g314250.t1.1		297558,298946,301229	298088,300994,302409	
chr7	302841	308497	303522	308231	-	Cre07.g314300.t1.1	Cre07.g314300.t1.1		308020,307682,307170,306814,306109,304931,304345,304026,302841	308497,307804,307216,306888,306204,305029,304495,304111,303834	
chr7	308608	315517	309204	314955	+	Cre07.g314351.t1.1	Cre07.g314351.t1.1		308608,308834,309187,309827,310280,310603,311189,311384,312433,313181,313725,314202,314787	308632,308899,309488,309986,310448,310803,311247,311998,312536,313325,313884,314257,315517	May contain additional coding sequence in intronic N-island PMID: 27175017
chr7	315848	324959	315947	324768	+	Cre07.g314400.t1.1	Cre07.g314400.t1.1		315848,316602,317025,317313,318131,318630,318986,319313,319990,320285,320543,320894,321415,321761,322360,322780,323117,324182,324681	316394,316712,317164,317915,318263,318761,319059,319647,320075,320323,320603,321226,321479,321935,322575,322880,323242,324301,324959	
chr7	325008	328809	325052	328149	+	CGL33B	Cre07.g314450.t1.1		325008,325363,325690,326009,326361,326806,327035,327447,327808	325229,325389,325762,326121,326481,326867,327145,327627,328809	Conserved in the Green Lineage
chr7	329048	340981	329369	339415	+	Cre07.g314500.t1.1	Cre07.g314500.t1.1		329048,329600,330053,330298,330854,331183,331795,332259,332646,333075,333351,333883,334464,334838,335120,335413,335920,336413,336657,336975,337409,337682,338028,338426,339079	329399,329730,330090,330437,330912,331347,331958,332329,332771,333120,333517,334006,334601,334949,335174,335517,336117,336500,336742,337125,337447,337737,338155,338777,340981	
chr7	341092	344584	341741	344420	-	Cre07.g314550.t1.2	Cre07.g314550.t1.2		344339,344099,343648,343109,342577,342115,341092	344584,344202,343821,343191,342701,342249,341921	Methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the N7 of guanines at position 46 of tRNAs; homologue of S. cerevisiae TRM8
chr7	344678	348384	344726	347742	+	RPI2	Cre07.g314600.t1.2		344678,344910,345157,345566,346053,346295,346570,347060,347344,347584	344782,344978,345229,345619,346142,346387,346751,347126,347377,348384	
chr7	348608	354037	349344	353914	-	RECA	Cre07.g314650.t1.2		353728,353528,353153,352668,352072,351613,351107,350914,350581,350314,349863,348608	354037,353619,353228,352793,352245,351717,351220,350972,350659,350367,349946,349443	Chloroplast localized single-strand DNA binding protein, involved in chloroplast genome integrity [PMID:27756821]; up-regulated in early zygotes; 3 AA difference with EST-based published sequence BAB64921 at boundaries of 4th intron
chr7	354325	355177	354815	355140	-	Cre07.g314676.t1.1	Cre07.g314676.t1.1		354325	355177	
chr7	355607	369485	355847	368639	+	Cre07.g314700.t1.2	Cre07.g314700.t1.2		355607,356149,356672,357051,357402,357777,358193,358684,359017,359492,359948,360451,360898,361329,361701,362170,362527,362832,363122,363576,364051,364504,364822,365132,365409,365750,366050,366483,366765,367627,368152,368495	355991,356436,356783,357240,357564,357995,358309,358808,359281,359695,360165,360634,361051,361417,361955,362295,362587,362942,363411,363905,364299,364608,364923,365198,365494,365900,366264,366564,366817,367812,368199,369485	
chr7	369613	375936	372472	375767	-	Cre07.g314751.t1.1	Cre07.g314751.t1.1		375671,374344,372801,369613	375936,375541,374146,372496	
chr7	376067	387370	376294	386502	+	Cre07.g314800.t1.2	Cre07.g314800.t1.2		376067,376510,376882,377470,377876,378294,378699,379241,379489,383303,383839,384308,384506,384838,385507,385847,386381	376310,376602,377108,377566,378084,378530,379037,379318,383088,383599,384069,384394,384661,385146,385575,386124,387370	
chr7	387437	388368	387617	387938	+	Cre07.g314833.t1.1	Cre07.g314833.t1.1		387437,387884	387776,388368	
chr7	388771	397236	389633	397097	-	EBM4	Cre07.g314866.t1.1		396313,394273,393830,393395,392970,392495,391753,391461,388771	397236,396126,394035,393588,393195,392641,392280,391588,391188	
chr7	397605	404856	398210	404758	-	HEL34	Cre07.g314900.t1.1		404670,404298,403672,402356,401888,401475,401157,400764,400464,400083,399690,399296,398843,397605	404856,404452,404037,402487,401987,401596,401230,400865,400536,400145,399860,399433,399058,398606	
chr7	404977	409937	405370	409577	+	RPC34	Cre07.g314950.t1.2		404977,406466,406876,407239,407512,407813,408287,409068,409435	405436,406564,406937,407303,407579,407925,408419,409177,409937	
chr7	409997	411598	410213	411144	+	CSG6	Cre07.g315000.t1.1		409997,410590	410427,411598	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	411612	417016	412239	416755	-	GGH1	Cre07.g315050.t1.1		416726,416561,416039,415783,415352,414481,413949,413477,412898,411612	417016,416624,416140,415810,415638,414557,414064,413603,412976,412455	Putative gamma-glutamyl hydrolase, folate metabolism, ER targeting sequence predicted by Predotar.
chr7	411612	417016	412239	416755	-	GGH1	Cre07.g315050.t2.1		416726,416561,416039,415607,415352,414481,413949,413477,412898,411612	417016,416624,416140,415638,415451,414557,414064,413603,412976,412455	Putative gamma-glutamyl hydrolase, folate metabolism, ER targeting sequence predicted by Predotar.
chr7	417197	420036	418015	419428	-	Cre07.g315100.t1.2	Cre07.g315100.t1.2		419734,419583,419372,418507,417197	420036,419617,419440,418698,418166	
chr7	420254	421526	420851	421488	-	RBD1	Cre07.g315150.t1.2		421320,420254	421526,421193	
chr7	421677	429958	421785	429632	+	RET1	Cre07.g315200.t1.1		421677,422011,422248,422616,422921,423307,423899,424228,424582,425019,428240	421842,422079,422367,422682,423027,423757,424021,424369,424820,427153,429958	related to Ethylene Insensitive Protein 2 (EIN2); PMID: 10381874; N-terminus is NRAMP-like, related to MntH manganese transport protein
chr7	429991	432176	430813	432159	-	CSG5	Cre07.g315250.t1.2		431588,429991	432176,431352	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	432223	434846	433535	434734	-	CSG4	Cre07.g315300.t1.2		434154,432223	434846,434062	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	434931	436896	435520	435884	-	Cre07.g315326.t1.1	Cre07.g315326.t1.1		436617,434931	436896,435933	
chr7	436961	444996	437616	444736	-	Cre07.g315350.t1.2	Cre07.g315350.t1.2		444650,444446,444208,443800,443358,442786,442064,441766,441230,440951,440403,440104,439624,439199,436961	444996,444504,444269,443922,443420,443123,442473,441845,441311,441060,440500,440179,439797,439306,438765	
chr7	445107	450568	445301	450478	+	NOA2	Cre07.g315400.t1.1		445107,446160,446670,447018,447351,447694,448010,448373,448816,449246,449568,449897	445831,446334,446758,447075,447451,447817,448111,448481,448976,449328,449656,450568	putative GTPase; shows similarity to plant nitric oxide associated protein (NOA1)
chr7	450617	453059	450656	451953	+	CSG3	Cre07.g315432.t1.2		450617,451405	451239,453059	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	453377	455602	453470	454756	+	CSG2	Cre07.g315450.t1.1		453377,454220	454032,455602	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function; null-allele mutant was isolated (PMID 29743196)
chr7	455611	462866	456417	462709	-	Cre07.g315500.t1.1	Cre07.g315500.t1.1		462541,462312,462080,461487,461174,460596,460112,459412,458982,458578,457961,457468,457129,456703,455611	462866,462386,462142,461618,461263,460673,460333,459750,459072,458747,458104,457672,457265,456791,456454	null-allele mutant was isolated (PMID 29743196)
chr7	462967	469946	463046	469586	+	Cre07.g315550.t1.1	Cre07.g315550.t1.1		462967,463394,463935,464640,465056,465761,466216,466676,467543,468042,468516,469175	463195,463491,464338,464722,465178,465956,466443,466973,467651,468137,468591,469946	
chr7	470179	478166	470613	477920	-	Cre07.g315600.t1.1	Cre07.g315600.t1.1		477643,477363,476992,476348,475782,475069,474564,473977,473734,473126,472441,472061,471679,470179	478166,477478,477093,476435,475917,475459,474737,474063,473778,473184,472807,472207,471804,471312	
chr7	478267	481588	478375	481306	+	Cre07.g315650.t1.2	Cre07.g315650.t1.2		478267,478626,479071,479612,479925,480396,480928	478397,478677,479302,479707,480196,480558,481588	possible arsenite methyltransferase
chr7	481592	484162	482037	484026	-	FKB16-1	Cre07.g315700.t1.2		483719,483396,483129,482816,482506,481592	484162,483443,483236,482901,482648,482089	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); probably directed to thylakoid lumen (homology to AtFKBP16-1 and bipartite cTP, length 65 or 54 + RR motif); [PMID: 15701785]
chr7	484327	490362	484411	489786	+	Cre07.g315750.t1.2	Cre07.g315750.t1.2		484327,484848,485195,485425,485881,486211,486552,486963,487374,487722,488656,489130,489786	484525,484952,485254,485478,485934,486303,486640,487092,487430,488542,488737,489276,490362	
chr7	490371	495296	490430	495050	-	Cre07.g315850.t1.1	Cre07.g315850.t1.1		494808,494379,493948,493536,492836,492047,491220,490696,490371	495296,494570,494134,493712,493284,492514,491823,490975,490534	
chr7	495434	498446	496406	498228	-	Cre07.g315900.t1.2	Cre07.g315900.t1.2		498111,497837,497366,496812,495434	498446,497948,497493,496884,496525	p24 protein family
chr7	498567	502465	498766	501465	+	Cre07.g315950.t1.1	Cre07.g315950.t1.1		498567,498938,499068,499226,499390,500664,501061	498848,498982,499145,499290,500351,500905,502465	null-allele mutant was isolated (PMID 29743196)
chr7	502847	504348	502943	503704	+	Cre07.g316000.t1.2	Cre07.g316000.t1.2		502847,503120,503456,503678	502970,503353,503540,504348	
chr7	504351	507346	504473	507254	-	CDJ2	Cre07.g316050.t1.2		507043,506524,506118,505572,505125,504351	507346,506630,506213,505727,505244,504773	Class III J-domain protein, not involved in protein refolding; binds and delivers VIPP1 to HSP7B; conserved in higher plants, but not in cyanobacteria
chr7	507487	525228	507682	523827	+	Cre07.g316100.t1.1	Cre07.g316100.t1.1		507487,508415,509043,509225,509576,509902,510219,510649,511465,512133,512369,512777,513390,513788,514229,514670,515278,516163,516645,517114,517611,518080,518835,519169,519695,520133,520838,521126,521957,522373,522754,523156	507742,508479,509072,509345,509683,509930,510343,510783,511642,512193,512516,513012,513479,513937,514381,515068,515811,516459,516860,517401,517886,518300,518971,519464,519886,520313,520916,521672,522016,522441,522814,525228	
chr7	525317	530198	525572	529302	+	Cre07.g316150.t1.1	Cre07.g316150.t1.1		525317	530198	
chr7	533631	543868	533732	542406	+	Cre07.g316200.t1.1	Cre07.g316200.t1.1		533631,534041,534978,535130,535627,540419,540577,540787,541171,541423,541808,542146	533919,534082,535019,535534,535715,540459,540666,541001,541238,541642,541921,543868	null-allele mutant was isolated (PMID 29743196)
chr7	544316	546320	544797	546086	-	CSG1	Cre07.g316350.t1.2		545485,544316	546320,545354	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	546681	550359	546877	550146	+	Cre07.g316400.t1.1	Cre07.g316400.t1.1		546681,546957,547266,547576,548133,548462,548767,549105,549397,549873	546897,547059,547388,547868,548245,548561,548838,549171,549648,550359	
chr7	550366	555400	551350	555131	-	Cre07.g316450.t1.1	Cre07.g316450.t1.1		554891,553846,553066,552640,552387,551923,550366	555400,554745,553613,552790,552431,552197,551534	
chr7	555601	561732	555868	561240	+	Cre07.g316500.t1.1	Cre07.g316500.t1.1		555601,556346,556850,558377,558916,559168,559522,559977,560343,561004	556153,556483,557623,558519,558982,559247,559667,560082,560626,561732	
chr7	561941	566842	561994	566274	+	Cre07.g316526.t1.2	Cre07.g316526.t1.2		561941,562378,562569,563026,563381,563670,564094,564617,565009,565514,565805,566253	562015,562432,562739,563113,563483,563819,564379,564690,565194,565688,565992,566842	
chr7	566921	572912	567172	571599	+	Cre07.g316550.t1.1	Cre07.g316550.t1.1		566921,567842,568992,570250	567637,568652,569993,572912	
chr7	572914	578730	573390	578594	-	MKP5	Cre07.g316600.t1.2		578532,578375,578051,577633,577199,576872,576664,576320,575942,575630,575172,574588,574146,573825,572914	578730,578444,578110,577679,577267,576916,576732,576412,576027,575698,575364,574841,574302,573886,573521	Dual Specificity Protein Phosphatase 5 (DSP5); Dephosphorylates and inactivates MAP kinases; Dephosphorylates phosphotyrosine, phosphoserine, and phosphothreonine residues
chr7	578795	591470	581015	591114	-	Cre07.g316650.t1.1	Cre07.g316650.t1.1		591103,590818,590301,589810,589376,588785,588437,588095,587735,587314,586770,586344,585873,585591,585171,584723,584332,583917,583515,583268,583012,582587,582037,581679,581316,578795	591470,591013,590507,589969,589491,588917,588585,588208,587824,587482,586982,586453,585929,585658,585369,584795,584432,584058,583523,583306,583038,582743,582276,581898,581378,581081	
chr7	591591	594722	591730	594316	+	Cre07.g316725.t1.1	Cre07.g316725.t1.1		591591,592426,592659,592879,593427,593848	592135,592491,592737,593196,593506,594722	
chr7	600115	602180	600391	601963	-	Cre07.g316800.t1.2	Cre07.g316800.t1.2		601899,600115	602180,601800	
chr7	602581	610942	602819	610309	+	MCM4	Cre07.g316850.t1.2		602581,602924,603214,603916,604232,604667,605049,605444,605879,606248,606630,607183,607568,608009,608379,608774,609363,609974	602835,602953,603578,604016,604286,604789,605156,605565,606044,606397,606911,607302,607735,608119,608548,608998,609664,610942	Homologous to MCM4/CDC21 DNA replication protein
chr7	610945	619890	612192	619751	-	Cre07.g316900.t1.1	Cre07.g316900.t1.1		619675,619516,619297,618953,618573,618048,617404,616692,615897,614861,613209,610945	619890,619602,619406,619088,618700,618387,617684,617105,616377,615611,614622,612828	
chr7	620121	638659	620915	637969	+	Cre07.g316992.t1.2	Cre07.g316992.t1.2		620121,621406,621981,622355,623282,623585,624154,625212,625526,625893,626487,626688,627799,628836,629711,630153,630701,631149,633155,634497,635149,635540,635939,636491,636681,637257,637767	620925,621661,622059,622433,623334,623926,624821,625344,625621,625946,626552,627611,628509,629287,630005,630503,630866,631744,634219,634613,635251,635622,636058,636559,636890,637384,638659	
chr7	620121	638659	620915	637969	+	Cre07.g316992.t2.1	Cre07.g316992.t2.1		620121,621406,621981,622355,623282,623585,624154,625212,625526,625893,626487,626688,627799,628836,629711,630153,630701,631149,633155,634497,635149,635540,635939,636681,637257,637767	620925,621661,622059,622433,623334,623926,624821,625344,625621,625946,626552,627611,628509,629287,630005,630503,630866,631744,634219,634613,635251,635622,636058,636890,637384,638659	
chr7	620121	636252	620915	636224	+	Cre07.g316992.t3.1	Cre07.g316992.t3.1		620121,621406,621981,622355,623282,623585,624154,625212,625526,625893,626487,626688,627799,628836,629711,630153,630701,631149,633155,634497,635149,635540,635939,636203	620925,621661,622059,622433,623334,623926,624821,625344,625621,625946,626552,627611,628509,629287,630005,630503,630866,631744,634219,634613,635251,635622,636058,636252	
chr7	629631	638659	629714	637969	+	Cre07.g316992.t4.1	Cre07.g316992.t4.1		629631,630153,630701,631149,633155,634497,635149,635540,635939,636491,636681,637257,637767	630005,630503,630866,631744,634219,634613,635251,635622,636058,636559,636890,637384,638659	
chr7	636361	638659	636668	637969	+	Cre07.g316992.t5.1	Cre07.g316992.t5.1		636361,637257,637767	636890,637384,638659	
chr7	639171	641386	639457	640786	+	Cre07.g317000.t1.2	Cre07.g317000.t1.2		639171,640786	640126,641386	
chr7	641565	645770	642116	645401	-	UBQ6	Cre07.g317050.t1.2		644820,644319,643716,641565	645770,644469,644021,643277	contains an N-terminal RING-like Zn-finger domain, an ubiquitin domain, among other regions with no database similarity
chr7	646455	650264	646529	649657	+	Cre07.g317100.t2.1	Cre07.g317100.t2.1		646455,647005,647437,648061,648619,648960,649158,649581	646598,647169,647523,648129,648705,648995,649348,650264	
chr7	646261	650214	646529	649657	+	Cre07.g317100.t1.1	Cre07.g317100.t1.1		646261,647005,647437,648061,648619,648960,649158,649581	646598,647169,647523,648129,648705,648995,649348,650214	
chr7	650311	654775	650425	653219	+	MKP7	Cre07.g317150.t1.2		650311,651008,651454,652319,652921	650465,651192,651789,652581,654775	
chr7	654835	659650	655160	659577	-	Cre07.g317201.t1.1	Cre07.g317201.t1.1		658946,654835	659650,658813	
chr7	659706	666030	660520	665477	-	CHI5	Cre07.g317250.t1.1		665735,665373,665190,664956,664652,664163,663854,662407,662011,661520,661199,659706	666030,665508,665248,665098,664794,664297,663986,663570,662276,661845,661286,660992	
chr7	666135	672950	666592	672063	-	MAPKKKK1	Cre07.g317300.t1.1		672153,672014,671541,671140,670527,670173,669780,669413,669094,668663,668005,667710,667314,666964,666135	672950,672067,671710,671277,670626,670279,669959,669532,669196,668861,668503,667823,667506,667147,666749	possibly involved in circadian rhythms
chr7	677491	679897	677604	679310	+	Cre07.g317350.t1.2	Cre07.g317350.t1.2		677491,678329,678540,678766,679310	678167,678415,678563,679270,679897	
chr7	681115	683270	682023	683218	-	Cre07.g317400.t1.1	Cre07.g317400.t1.1		682630,681115	683270,682425	
chr7	683335	685700	684059	685656	-	Cre07.g317421.t1.2	Cre07.g317421.t1.2		684960,684717,683335	685700,684860,684551	
chr7	685755	686800	685790	686681	-	Cre07.g317438.t1.2	Cre07.g317438.t1.2		686423,685755	686800,686276	
chr7	686941	689381	686968	687843	+	Cre07.g317450.t1.1	Cre07.g317450.t1.1		686941,687764	687576,689381	
chr7	686941	689381	686968	688637	+	Cre07.g317450.t2.1	Cre07.g317450.t2.1		686941,687764,687979,688204,688637	687576,687850,688002,688598,689381	
chr7	694035	710090	694767	709955	-	Cre07.g317500.t1.1	Cre07.g317500.t1.1		709778,709627,709442,709111,708604,708408,708261,708022,707511,707174,706327,706027,705772,705208,704842,704406,704091,703067,701604,701361,700857,700165,698641,696124,695562,694035	710090,709681,709551,709305,708951,708455,708302,708105,707692,707426,707079,706224,705927,705651,705075,704738,704226,703938,702920,701504,701195,700758,700017,698490,695919,695402	null-allele mutant was isolated (PMID 29743196)
chr7	710242	715198	710371	714449	+	Cre07.g317550.t1.1	Cre07.g317550.t1.1		710242,710671,710887,711085,711453,711783,711998,712252,712462,712688,713081,713340,713684,714237	710556,710749,710980,711164,711576,711859,712088,712307,712515,712816,713163,713556,714062,715198	
chr7	715296	716600	716298	716563	-	Cre07.g317576.t1.1	Cre07.g317576.t1.1		715296	716600	
chr7	717950	720380	718510	720154	-	Cre07.g317601.t1.1	Cre07.g317601.t1.1		719753,719479,719325,718557,717950	720380,719565,719348,719123,718510	
chr7	722895	724690	723547	724502	-	Cre07.g317626.t1.1	Cre07.g317626.t1.1		722895	724690	
chr7	725951	732040	726623	731997	-	Cre07.g317650.t1.1	Cre07.g317650.t1.1		731853,730969,730508,730020,729593,728717,728132,727829,727092,725951	732040,731763,730778,730104,729829,729359,728536,727915,727300,726623	
chr7	732092	739850	732505	739715	-	Cre07.g317750.t1.1	Cre07.g317750.t1.1		739604,739184,738844,738370,737804,737360,737024,736694,734863,734211,733628,733088,732092	739850,739402,738942,738439,737917,737460,737119,736789,736290,734470,733976,733387,732952	
chr7	739901	751070	740431	750749	-	Cre07.g317800.t1.2	Cre07.g317800.t1.2		750599,750034,749556,749158,748738,748414,747525,747156,746753,746130,745579,745202,744563,743586,743128,742701,742148,741771,741364,740976,739901	751070,750381,749681,749233,748934,748479,747928,747288,746877,746268,745758,745264,744746,743689,743193,742910,742486,741878,741525,741056,740581	
chr7	739901	751070	740431	750749	-	Cre07.g317800.t2.1	Cre07.g317800.t2.1		750599,750034,749556,749158,748738,748414,747525,747156,746753,746130,745579,745202,744563,743586,743128,742701,742148,741771,741364,740976,739901	751070,750381,749681,749233,748934,748479,747928,747288,746877,746268,745758,745264,744746,743686,743193,742910,742486,741878,741525,741056,740581	
chr7	751180	754360	751399	754151	-	FBB10	Cre07.g317850.t1.2		754089,753889,753721,753469,753148,752719,752283,751926,751180	754360,754003,753795,753594,753275,752884,752462,752072,751741	Conserved protein found in ciliated organisms, unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation; Coiled-Coil Protein
chr7	755231	757351	755606	756166	+	Cre07.g317864.t1.1	Cre07.g317864.t1.1		755231,755605,755903	755448,755766,757351	
chr7	755231	757351	755606	756166	+	Cre07.g317864.t2.1	Cre07.g317864.t2.1		755231,755602,755903	755448,755766,757351	
chr7	755231	757572	755606	756166	+	Cre07.g317864.t3.1	Cre07.g317864.t3.1		755231,755602,755903	755448,755766,757572	
chr7	757821	766352	757969	765689	+	Cre07.g317908.t1.2	Cre07.g317908.t1.2		757821,758490,758846,759457,759925,760631,761140,761505,761886,762538,762794,763137,763685,764031,764558,764882	758252,758606,759080,759541,760353,760715,761237,761624,762003,762689,762852,763257,763780,764129,764692,766352	
chr7	766355	776490	768486	775972	-	Cre07.g317950.t1.1	Cre07.g317950.t1.1		776109,775928,774452,773239,772614,772293,771459,770990,766355	776490,775976,775535,774150,773084,772355,772085,771142,770703	
chr7	776951	780373	777301	779350	+	Cre07.g318000.t1.2	Cre07.g318000.t1.2		776951,777706,778217,778737,779083	777318,777886,778422,778923,780373	
chr7	782941	789359	783227	786751	+	Cre07.g318050.t1.2	Cre07.g318050.t1.2		782941,783610,783948,784184,784361,784564,785128	783230,783767,784038,784272,784421,784947,789359	
chr7	789365	794126	789824	794041	-	CGLD34	Cre07.g318200.t1.1		793666,792848,791899,791475,791092,790679,790297,789365	794126,793491,792634,791731,791284,790891,790473,790022	Conserved in the Green Lineage and Diatoms
chr7	794175	798990	794295	798684	-	Cre07.g318209.t1.2	Cre07.g318209.t1.2		798414,797562,796652,796182,795774,795306,794785,794175	798990,798295,797465,796480,795966,795638,795069,794562	
chr7	799055	803200	799327	802801	-	HLM12	Cre07.g318250.t1.1		802532,801709,801201,800748,800230,799776,799055	803200,802447,801427,800940,800529,799994,799552	Contains SET domain.  ChromoDB SDG3415
chr7	799055	803200	799327	802801	-	HLM12	Cre07.g318250.t2.1		802532,801709,801201,800748,800230,799776,799055	803200,802447,801424,800940,800529,799994,799552	Contains SET domain.  ChromoDB SDG3415
chr7	803311	804412	803447	803881	+	Cre07.g318276.t1.1	Cre07.g318276.t1.1		803311,803714	803460,804412	
chr7	804415	815510	804971	815280	-	Cre07.g318300.t1.1	Cre07.g318300.t1.1		815221,815084,814895,814747,814454,814119,813765,812910,812038,811688,810975,810505,810211,809878,809563,809173,808631,808208,804415	815510,815144,814949,814807,814521,814312,813890,813536,812754,811789,811271,810796,810330,809994,809681,809337,808924,808447,808076	
chr7	815901	824567	816141	823219	+	CGL64	Cre07.g318350.t1.2		815901,816324,817353,818186,818920,819273,819779,820077,820429,820790,821412,821722,822069,822414,822792	816243,816428,817599,818322,818991,819359,819846,820152,820563,820873,821519,821814,822137,822541,824567	
chr7	825092	827372	825496	827021	+	Cre07.g318400.t1.1	Cre07.g318400.t1.1		825092,825670,825887,826256,826604,826887	825575,825733,825980,826375,826697,827372	
chr7	827421	828152	827434	827906	+	Cre07.g318426.t1.1	Cre07.g318426.t1.1		827421,827581,827824	827460,827664,828152	
chr7	828155	829770	828731	829532	-	SEC61B	Cre07.g318450.t1.2		829429,829255,829100,828155	829770,829346,829165,828749	Expressed Protein. Similar to Sec61-beta subunit of the ER-protein translocase.
chr7	829891	837902	831199	836843	+	Cre07.g318500.t1.1	Cre07.g318500.t1.1		829891,830528,830771,830923,831517,831832,832315,832664,833176,833525,833848,834121,834568,834874,835435,835884,836231,836627	830079,830532,830818,831259,831558,832023,832431,832735,833292,833596,833921,834264,834670,835382,835577,835989,836345,837902	Similar to chalcone and stilbene synthases and related to polyketide sythases
chr7	837912	861470	838651	860710	-	CYA8	Cre07.g318551.t1.1		860643,860230,859196,858513,857850,857279,856521,856110,855586,855182,854236,853851,853456,852813,852351,851877,851191,850409,849382,848901,848538,847900,847491,846911,846024,845603,845102,842662,842122,841629,840633,839968,837912	861470,860301,859276,858643,857998,857452,856617,856171,855690,855265,854337,853899,853541,852927,852438,852043,851278,850686,849616,848977,848617,847990,847616,847063,846095,845697,845243,843612,842439,841880,841289,840126,839644	possible guanylate or adenylate cyclase with leucine-rich repeat in N-terminal region
chr7	868001	870882	868106	870226	+	HSP22H	Cre07.g318600.t1.2		868001,868773,869301,869572,869968	868302,868861,869351,869679,870882	small heat shock protein containing at least first part of alpha-crystallin domain; N-terminus by ChloroP and TargetP not predicted to be organellar targeting sequence, thus rather cytosolic; not present in version 1 of the genome
chr7	870885	882470	871482	882296	-	AOF4	Cre07.g318651.t1.1		881471,880848,880656,880056,879644,879188,878758,878478,877764,876964,876344,875880,875388,874698,874077,873679,873288,872759,872460,871920,870885	882470,880994,880664,880150,879771,879288,878844,878564,878041,877106,876513,875963,875506,874902,874225,873778,873398,872902,872502,872240,871685	Flavin-containing amine oxidase family protein, ChromDB HDMA341; SWIRM domain-containing protein.  Possible polyamine oxidase
chr7	882581	887309	882817	886794	+	Cre07.g318702.t1.1	Cre07.g318702.t1.1		882581,884027,884482,884984,885434,886032,886429,886662	883447,884122,884604,885093,885545,886130,886476,887309	
chr7	888318	892534	888828	891417	+	PURM	Cre07.g318750.t1.2		888318,889405,890028,890720,891264	889173,889755,890132,890887,892534	PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis; catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis;
chr7	893237	894946	893889	894868	-	HSP22A	Cre07.g318800.t1.2		894711,894463,893237	894946,894551,894117	small heat shock protein containing an alpha-crystallin domain, most likely cytosolic; is arranged head-to-head with HSP22B, with which HSP22A shares 70% identity; PMID: 2473899, 8026482,1697261, 10982457, 16143837
chr7	895038	896693	895402	896109	+	HSP22B	Cre07.g318850.t1.2		895038,895860	895504,896693	small heat shock protein containing an alpha-crystallin domain, most likely cytosolic; is arranged head-to-head with HSP22A, with which HSP22B shares 70% identity; PMID: 16143837
chr7	895038	896796	895402	896109	+	HSP22B	Cre07.g318850.t2.1		895038,895860	895504,896796	small heat shock protein containing an alpha-crystallin domain, most likely cytosolic; is arranged head-to-head with HSP22A, with which HSP22B shares 70% identity; PMID: 16143837
chr7	896802	907627	896878	907428	-	DNJ2	Cre07.g318900.t1.1		907305,906907,906614,906418,904774,904388,903892,902790,902115,901516,901093,900540,899981,899558,898926,897878,897493,896802	907627,907116,906692,906476,906079,904461,904140,903634,902259,901611,901209,900683,900076,899674,899154,898454,897604,897025	DnaJ-like protein 2; contains N-terminal J-domain (pfam226) and ankyrin repeat (pfam23); no N-terminal extension, thus probably cytosolic
chr7	907930	915697	908783	915300	-	Cre07.g318950.t1.2	Cre07.g318950.t1.2		915524,914677,914217,913888,913603,913300,912628,912152,911577,910786,910353,909898,909616,909436,909085,907930	915697,915361,914456,913981,913670,913387,912770,912386,912019,911377,910541,910032,909702,909489,909158,908844	
chr7	915749	921687	916024	921435	-	Cre07.g319000.t1.1	Cre07.g319000.t1.1		921330,921079,920496,919870,918736,917978,917559,915749	921687,921189,920842,919982,919281,918406,917743,917344	
chr7	927202	933757	927545	933454	-	Cre07.g319001.t1.2	Cre07.g319001.t1.2		933409,933245,929074,928652,927202	933757,933297,932896,928965,928332	
chr7	922182	927097	922776	926897	-	Cre07.g319002.t1.1	Cre07.g319002.t1.1		926590,925727,925232,924658,924379,924092,923460,922182	927097,926212,925483,924806,924513,924170,923638,923055	
chr7	933988	935739	934342	935521	+	Cre07.g319050.t1.2	Cre07.g319050.t1.2		933988,935020,935326	934434,935035,935739	
chr7	935742	939317	936254	939269	-	TEF18	Cre07.g319100.t1.1		939162,938930,938006,937274,936890,935742	939317,939062,938128,937716,936989,936551	Glutathione S-transferase-related protein, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr7	939418	946283	939817	945578	+	PTP4	Cre07.g319150.t1.2		939418,940254,941161,941756,942189,942517,942961,943274,945211	939872,940666,941268,941842,942297,942653,943019,944719,946283	
chr7	946758	950799	947008	950268	+	Cre07.g319200.t1.2	Cre07.g319200.t1.2		946758,950097	949348,950799	
chr7	950957	952129	951235	951938	+	Cre07.g319226.t1.1	Cre07.g319226.t1.1		950957	952129	
chr7	952328	954449	952363	953895	+	Cre07.g319250.t1.1	Cre07.g319250.t1.1		952328,953691	953449,954449	
chr7	954498	966913	954587	965847	+	GWD1	Cre07.g319300.t1.1		954498,954728,954877,955058,955578,955879,956389,957094,957724,958244,958707,959212,959507,959928,960454,960929,961324,961750,962026,962309,962651,962898,963298,963631,963936,964328,964815,965346,965714	954655,954813,954989,955251,955659,956141,956613,957340,957873,958328,958874,959311,959614,960145,960711,961100,961532,961838,962133,962500,962755,963050,963424,963803,964152,964576,964997,965439,966913	phosphorylates the C-3 and C-6 positions of alpha glucans with the beta phosphate of ATP
chr7	967504	968777	968512	968696	-	Cre07.g319310.t1.1	Cre07.g319310.t1.1		967504	968777	
chr7	976978	982619	978061	982398	+	Cre07.g319320.t1.1	Cre07.g319320.t1.1		976978,978027,978945,979554,979971,980259,980553,980924,981353,981817,982302	977709,978175,979079,979712,980042,980327,980624,981039,981659,981957,982619	1-aminocyclopropane-1-carboxylate deaminase, similar to Trp synthase.  1-aminocyclopropane-1-carboxylate is a key intermediate in the biosynthesis of the plant hormone ethylene.  Used Pyridoxal phosphate a co-factor
chr7	982642	984997	983357	984839	-	Cre07.g319330.t1.1	Cre07.g319330.t1.1		984621,984176,983785,982642	984997,984361,983874,983463	
chr7	995809	1003134	995827	1002068	+	Cre07.g319340.t1.1	Cre07.g319340.t1.1		995809,996149,996675,997150,997545,997971,998247,998530,998872,999119,999519,999852,1000157,1000549,1001036,1001567,1001935	995835,996366,996932,997321,997753,998059,998354,998721,998976,999271,999645,1000024,1000373,1000797,1001218,1001660,1003134	
chr7	1003280	1016235	1005642	1015986	-	Cre07.g319350.t1.1	Cre07.g319350.t1.1		1015841,1015396,1015045,1014612,1014297,1013877,1013591,1013395,1012917,1012368,1011659,1011328,1010872,1010279,1009932,1009635,1009358,1009097,1007481,1006194,1003280	1016235,1015457,1015158,1014678,1014403,1014066,1013638,1013401,1013182,1012518,1012212,1011451,1011012,1010597,1009967,1009760,1009433,1009110,1007519,1006373,1005912	null-allele mutant was isolated (PMID 29743196)
chr7	1003280	1016235	1005642	1015986	-	Cre07.g319350.t2.1	Cre07.g319350.t2.1		1015841,1015396,1015045,1014612,1014297,1013877,1013591,1013395,1012917,1012368,1011659,1011328,1010872,1010279,1009932,1009635,1009358,1007758,1007481,1006194,1003280	1016235,1015457,1015158,1014678,1014403,1014066,1013638,1013401,1013182,1012518,1012212,1011451,1011012,1010597,1009967,1009760,1009433,1007771,1007519,1006373,1005912	null-allele mutant was isolated (PMID 29743196)
chr7	1016896	1021597	1017148	1021437	+	Cre07.g319400.t1.2	Cre07.g319400.t1.2		1016896,1017984,1018593,1019010,1019298,1019592,1019963,1020392,1020856,1021341	1017214,1018118,1018751,1019081,1019366,1019663,1020078,1020698,1020996,1021597	
chr7	1021604	1027325	1022396	1027069	-	PHC73	Cre07.g319452.t1.1		1026736,1026400,1026086,1023996,1023696,1023251,1022860,1021604	1027325,1026535,1026237,1025887,1023836,1023436,1022949,1022502	
chr7	1027380	1033725	1028063	1033492	-	Cre07.g319500.t1.1	Cre07.g319500.t1.1		1033074,1032793,1032368,1031972,1031560,1031096,1030556,1030306,1029780,1028376,1027380	1033725,1032865,1032455,1032015,1031602,1031254,1030627,1030326,1029977,1029521,1028132	
chr7	1033833	1040373	1033966	1039447	+	Cre07.g319550.t1.1	Cre07.g319550.t1.1		1033833,1034560,1034815,1035400,1035706,1036038,1036531,1036716,1037328,1037641,1037985,1038349,1038674,1039259	1034294,1034645,1034883,1035489,1035754,1036141,1036579,1037104,1037471,1037748,1038077,1038420,1038845,1040373	
chr7	1041486	1048244	1041877	1047282	+	FAE3	Cre07.g319600.t1.2		1041486,1042251,1042603,1043018,1043352,1043644,1044083,1044544,1045858,1046271,1046850	1041937,1042292,1042794,1043134,1043423,1043861,1044185,1045468,1045963,1046385,1048244	Putative 3-keto-acyl-CoA synthase (very long chain fatty acid condensing enzyme), may be a beta-ketoacyl-acyl-carrier-protein synthase; similar to chalcone and stilbene synthases, and polyketide synthases.  Similar to the CUTICULAR1 (CUT1) enzyme in Arabi
chr7	1049013	1069845	1050540	1069755	-	FXL4	Cre07.g319650.t1.1		1069636,1068888,1068673,1068291,1067915,1067669,1067436,1067120,1066955,1066691,1066401,1066191,1065719,1065223,1064883,1064580,1064244,1063679,1063347,1063059,1062732,1062278,1062033,1061557,1061172,1060721,1060319,1059933,1059514,1059121,1058707,1057781,1057119,1056783,1056451,1056152,1055943,1055568,1055317,1054983,1054690,1054236,1053864,1053181,1052876,1052611,1052234,1051838,1051501,1051175,1049013	1069845,1068958,1068749,1068354,1067968,1067710,1067546,1067199,1066979,1066772,1066503,1066283,1065856,1065509,1064985,1064674,1064393,1063940,1063517,1063120,1062864,1062393,1062094,1061768,1061324,1060891,1060394,1060060,1059734,1059275,1058864,1058144,1057631,1056928,1056518,1056209,1055968,1055673,1055374,1055014,1054817,1054357,1054030,1053495,1052968,1052703,1052335,1051945,1051638,1051275,1051030	FixL like homolog 4 (FXL). PAS region shows high identity to Rhizobial FixL proteins.
chr7	1069900	1074955	1072540	1074219	-	Cre07.g319701.t1.2	Cre07.g319701.t1.2		1074755,1074129,1073831,1069900	1074955,1074463,1073906,1073703	
chr7	1075066	1079507	1075176	1079470	+	HEL35	Cre07.g319750.t1.2		1075066,1075696,1076125,1076553,1077294,1078109,1078530,1078842	1075372,1075858,1076197,1076906,1077871,1078218,1078644,1079507	
chr7	1079509	1083055	1080507	1082556	-	Cre07.g319800.t1.2	Cre07.g319800.t1.2		1082870,1082505,1082158,1079509	1083055,1082729,1082242,1082003	
chr7	1083186	1092243	1083677	1091047	+	Cre07.g319850.t1.2	Cre07.g319850.t1.2		1083186,1083600,1084160,1086287,1086631,1087253,1087576,1087760,1088054,1088284,1088670,1088990	1083440,1083934,1085912,1086497,1087059,1087437,1087615,1087884,1088173,1088501,1088848,1092243	
chr7	1092266	1093946	1092755	1093882	-	RRP40	Cre07.g319900.t1.1		1093858,1093628,1093369,1092266	1093946,1093788,1093426,1093208	Homologue of S. cerevisiae Rrp40, which is a core component of the exosome, a complex of multiple 3'-5' exoribonucleases involved in RNA processing and RNA degradation
chr7	1094066	1096081	1094193	1095774	+	Cre07.g319950.t1.2	Cre07.g319950.t1.2		1094066,1094561,1094872,1095323,1095716	1094347,1094700,1095141,1095456,1096081	
chr7	1096176	1100767	1097157	1100087	+	Cre07.g320000.t1.2	Cre07.g320000.t1.2		1096176,1096404,1096620,1097100,1097354,1097585,1097836,1098011,1098465,1098723,1098925,1099114,1099580,1100012	1096224,1096518,1096712,1097189,1097365,1097690,1097893,1098210,1098545,1098752,1098986,1099308,1099637,1100767	
chr7	1096176	1100767	1097157	1100087	+	Cre07.g320000.t2.1	Cre07.g320000.t2.1		1096176,1096404,1096620,1097100,1097585,1097836,1098011,1098465,1098723,1098925,1099114,1099580,1100012	1096224,1096518,1096712,1097189,1097690,1097893,1098210,1098545,1098752,1098986,1099308,1099637,1100767	
chr7	1096176	1100767	1097585	1100087	+	Cre07.g320000.t3.1	Cre07.g320000.t3.1		1096176,1096404,1096620,1097100,1097354,1097585,1097836,1098011,1098465,1098723,1098925,1099114,1099580,1100012	1096224,1096518,1096712,1097179,1097365,1097690,1097893,1098210,1098545,1098752,1098986,1099308,1099637,1100767	
chr7	1101146	1109278	1101399	1107450	+	PTK1	Cre07.g320050.t1.1		1101146,1101776,1102178,1102422,1102883,1103329,1103641,1105633,1105990,1106331,1106493,1106771,1107061,1107342	1101687,1101835,1102280,1102639,1103138,1103446,1105467,1105819,1106109,1106342,1106618,1106868,1107130,1109278	Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr7	1109522	1112085	1110447	1111982	-	Cre07.g320093.t1.2	Cre07.g320093.t1.2		1111883,1110853,1109522	1112085,1111735,1110447	
chr7	1112186	1113647	1112239	1113303	+	Cre07.g320100.t1.1	Cre07.g320100.t1.1		1112186,1112462,1112813	1112323,1112619,1113647	
chr7	1113657	1116575	1114098	1116505	-	ERJ1	Cre07.g320150.t1.2		1116400,1116273,1116131,1115775,1115352,1114802,1113657	1116575,1116341,1116197,1115895,1115466,1115005,1114470	DnaJ-like protein; probably targeted to ER, as judged from high homology to Arabidopsis Q9LZK5 predicted by TargetP (reliability score 1) to be targeted to the ER; contains N-terminal J-domain (pfam00226) and DnaJ C-ter domain (pfam01556).
chr7	1116630	1125025	1116848	1124904	-	Cre07.g320200.t1.1	Cre07.g320200.t1.1		1124877,1124372,1123398,1123168,1122802,1122373,1122005,1121646,1121025,1120729,1120335,1119975,1119621,1119299,1118863,1118358,1117923,1117574,1116630	1125025,1124783,1124275,1123257,1123013,1122706,1122252,1121901,1121414,1120879,1120598,1120181,1119769,1119461,1119134,1118595,1118216,1117689,1117397	
chr7	1125136	1127297	1125262	1127276	+	Cre07.g320250.t1.1	Cre07.g320250.t1.1		1125136,1125573,1125983,1126697	1125394,1125820,1126301,1127297	
chr7	1127300	1128475	1127444	1128351	-	Cre07.g320300.t1.2	Cre07.g320300.t1.2		1128245,1127967,1127725,1127300	1128475,1128067,1127766,1127552	
chr7	1128576	1132201	1128826	1130846	+	CDJ5	Cre07.g320350.t1.2		1128576,1128980,1129275,1129514,1129772,1130028,1130180,1130630	1128852,1129097,1129365,1129612,1129894,1130055,1130438,1132201	DnaJ-like protein; probably targeted to chloroplast, as judged from presence of N-ter extension and from homology to Arabidopsis NP_197715 and rice Q7XQ89 predicted by TargetP to be chloroplast-targeted; contains N-terminal J-domain (pfam226) and Ferredoxin domain (COG1141)
chr7	1133704	1135253	1134262	1135177	-	ELIP4	Cre07.g320400.t1.2		1135063,1134632,1133704	1135253,1134847,1134505	belongs to chlorophyll A-B binding protein superfamily
chr7	1136554	1138465	1137111	1138037	-	Cre07.g320450.t1.2	Cre07.g320450.t1.2		1137923,1137496,1136554	1138465,1137711,1137354	
chr7	1136554	1138108	1137111	1138037	-	Cre07.g320450.t2.1	Cre07.g320450.t2.1		1137923,1137496,1136554	1138108,1137711,1137354	
chr7	1139356	1147497	1140360	1146219	+	OPR29	Cre07.g320500.t1.2		1139356,1139686,1139832,1140052,1141430,1141924,1142888,1143464,1144132,1145090,1145359,1145639,1146056	1139584,1139728,1139885,1141251,1141610,1142587,1143082,1143899,1144811,1145192,1145484,1145787,1147497	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr7	1147500	1152515	1148281	1152383	-	FAE4	Cre07.g320550.t1.2		1152355,1151712,1151151,1150955,1150527,1150051,1149504,1149201,1148805,1147500	1152515,1151803,1151322,1151022,1150715,1150268,1149748,1149306,1148919,1148611	Putative 3-keto-acyl-CoA synthase (very long chain fatty acid condensing enzyme), may be a beta-ketoacyl-acyl-carrier-protein synthase; similar to chalcone and stilbene synthases, and polyketide synthases
chr7	1152563	1154585	1153107	1154283	-	Cre07.g320600.t1.2	Cre07.g320600.t1.2		1154147,1153822,1153493,1152563	1154585,1154036,1153627,1153245	null-allele passenger mutation was isolated (PMID 29743196)
chr7	1154706	1158216	1154786	1157582	+	PIGV	Cre07.g320650.t1.1		1154706,1155385,1155589,1156061,1156268,1156775	1155159,1155478,1155941,1156131,1156606,1158216	transfers hexosyl groups
chr7	1162136	1167133	1162233	1166227	+	CYG11	Cre07.g320700.t1.1		1162136,1162392,1162752,1162981,1163350,1163775,1164226,1164510,1164640,1164944,1165340,1165597	1162242,1162619,1162805,1163237,1163620,1164116,1164372,1164537,1164764,1165177,1165465,1167133	C terminal domain similar to guanylate cyclase 1 from Homo sapiens
chr7	1168552	1174826	1168974	1173631	+	CYG12	Cre07.g320750.t1.1		1168552,1169113,1169499,1169711,1170158,1170545,1171081,1171429,1171592,1171905,1172356,1172593	1168983,1169352,1169552,1169976,1170431,1170979,1171227,1171456,1171716,1172138,1172481,1174826	Internal domain similar to guanylate cyclase 1 from Homo sapiens
chr7	1174836	1177071	1174993	1176642	-	Cre07.g320800.t1.2	Cre07.g320800.t1.2		1176959,1176776,1176554,1176350,1175788,1175327,1174836	1177071,1176841,1176658,1176426,1176201,1175540,1175184	
chr7	1177182	1181823	1177355	1181403	+	Cre07.g320850.t1.2	Cre07.g320850.t1.2		1177182,1177592,1177770,1178029,1178452,1178769,1179012,1179396,1179628,1179968,1180333,1180592	1177365,1177646,1177895,1178125,1178597,1178866,1179188,1179488,1179709,1180196,1180427,1181823	
chr7	1181825	1184951	1182586	1184846	-	Cre07.g320900.t1.2	Cre07.g320900.t1.2		1184276,1183906,1183714,1183537,1183256,1182923,1181825	1184951,1184109,1183785,1183580,1183410,1183088,1182803	
chr7	1185092	1187769	1185150	1186791	+	Cre07.g320950.t1.2	Cre07.g320950.t1.2		1185092,1185418,1185645,1185854,1186079,1186512,1186712	1185235,1185474,1185751,1185945,1186301,1186585,1187769	
chr7	1187790	1198251	1189260	1197714	-	CYG14	Cre07.g321000.t1.1		1198020,1197613,1197352,1196815,1196287,1195851,1195375,1192531,1192352,1192092,1191167,1190834,1190516,1190264,1189971,1189735,1189611,1187790	1198251,1197883,1197407,1197098,1196510,1196100,1195590,1195182,1192410,1192217,1191854,1191020,1190695,1190380,1190116,1189826,1189653,1189413	similar to guanylate cyclase 1 (GCYB2) from Homo sapiens
chr7	1198402	1202851	1198920	1202595	+	Cre07.g321050.t1.1	Cre07.g321050.t1.1		1198402,1198794,1199031,1199251,1200379,1200962,1201349,1202154,1202520	1198677,1198936,1199117,1200272,1200748,1201109,1202007,1202350,1202851	
chr7	1202856	1207931	1204328	1207763	-	Cre07.g321100.t1.2	Cre07.g321100.t1.2		1207481,1207280,1206931,1206621,1206331,1206107,1205865,1205446,1205127,1204889,1204672,1202856	1207931,1207363,1207062,1206746,1206446,1206186,1205947,1205608,1205274,1204973,1204743,1204421	
chr7	1208025	1213011	1208305	1212541	-	CYG15	Cre07.g321150.t1.1		1212532,1212054,1211873,1211442,1211059,1210471,1210208,1209977,1209717,1209299,1209021,1208025	1213011,1212281,1211926,1211698,1211329,1210812,1210333,1210004,1209841,1209532,1209146,1208863	C terminal domain similar to guanylate cyclase 1 from Homo sapiens
chr7	1213731	1219301	1214500	1219123	-	Cre07.g321200.t1.2	Cre07.g321200.t1.2		1218727,1218380,1217967,1217115,1216762,1216553,1216239,1215851,1215566,1215223,1213731	1219301,1218585,1218086,1217608,1216988,1216597,1216368,1216017,1215602,1215370,1214846	null-allele mutant was isolated (PMID 29743196)
chr7	1213731	1219301	1214500	1219123	-	Cre07.g321200.t2.1	Cre07.g321200.t2.1		1218727,1218380,1217967,1217115,1216762,1216553,1216239,1215851,1215566,1215223,1213731	1219301,1218585,1218086,1217608,1216988,1216597,1216368,1216014,1215602,1215370,1214846	null-allele mutant was isolated (PMID 29743196)
chr7	1219462	1223113	1219723	1222498	+	Cre07.g321250.t1.2	Cre07.g321250.t1.2		1219462,1220126,1220421,1220595,1221011,1221297,1221548,1221764,1222368	1219864,1220240,1220461,1220773,1221137,1221391,1221610,1222141,1223113	
chr7	1223116	1225761	1223570	1225712	-	Cre07.g321300.t1.2	Cre07.g321300.t1.2		1225549,1225222,1224683,1224189,1223880,1223116	1225761,1225319,1224809,1224298,1223936,1223612	
chr7	1226511	1234793	1226797	1234409	+	Cre07.g321350.t1.2	Cre07.g321350.t1.2		1226511,1227163,1227520,1228059,1229302,1230762,1231065,1231455,1231783,1232184,1232687,1233039,1233362,1233825,1234277	1226998,1227279,1227569,1228206,1229485,1230895,1231171,1231587,1231947,1232357,1232788,1233083,1233391,1233965,1234793	
chr7	1234812	1246321	1236022	1245415	-	FAP113	Cre07.g321400.t1.1		1245805,1245538,1245409,1245202,1244605,1244387,1244126,1243794,1243578,1243306,1243058,1242823,1242500,1242089,1241832,1241436,1239345,1239007,1238687,1238079,1237629,1237245,1237008,1234812	1246321,1245660,1245447,1245355,1244834,1244436,1244203,1243921,1243693,1243427,1243108,1242941,1242602,1242252,1241920,1241693,1241236,1239183,1238818,1238500,1237930,1237486,1237088,1236851	Contains a predicted C-terminal transmembrane domain; Flagellar Associated Protein, found in the flagellar proteome, contains Myxococcus cysteine-rich repeat
chr7	1255642	1260306	1255808	1259143	+	Cre07.g321550.t1.2	Cre07.g321550.t1.2		1255642,1256172,1256658,1256919,1257431,1257739,1258138,1258519,1258993	1255814,1256433,1256727,1257173,1257515,1257891,1258197,1258659,1260306	Basic-leucine zipper (bZIP) transcription factor
chr7	1260326	1262471	1260940	1262328	-	Cre07.g321600.t1.2	Cre07.g321600.t1.2		1262027,1260326	1262471,1261704	
chr7	1262582	1267103	1262956	1265732	+	CYCL1	Cre07.g321650.t1.2		1262582,1263374,1263935,1264321,1265179,1265673	1263190,1263517,1264186,1265006,1265378,1267103	homologous to cyclin L; possible role in transcription
chr7	1267106	1273791	1267344	1273690	-	ADH3	Cre07.g321700.t1.2		1273609,1273221,1272666,1272125,1271728,1271450,1271214,1270894,1270651,1270320,1269770,1269335,1269026,1268754,1268486,1268284,1267106	1273791,1273280,1272824,1272265,1271870,1271529,1271260,1270993,1270679,1270427,1269874,1269441,1269089,1268809,1268549,1268326,1267544	Alcohol dehydrogenase, zinc-containing
chr7	1278084	1281501	1278684	1281333	-	Cre07.g321750.t1.2	Cre07.g321750.t1.2		1281144,1280848,1280271,1279678,1279056,1278084	1281501,1280958,1280521,1279801,1279359,1278845	
chr7	1278084	1281483	1278684	1281255	-	Cre07.g321750.t2.1	Cre07.g321750.t2.1		1281144,1280848,1280271,1279678,1279056,1278084	1281483,1280958,1280521,1279801,1279359,1278845	
chr7	1281702	1283531	1281838	1283055	+	Cre07.g321800.t1.2	Cre07.g321800.t1.2		1281702,1282324,1282833	1282064,1282559,1283531	
chr7	1283634	1286551	1284345	1286359	-	Cre07.g321850.t1.2	Cre07.g321850.t1.2		1286323,1286063,1285655,1285084,1284722,1283634	1286551,1286128,1285726,1285244,1284802,1284523	
chr7	1286652	1289503	1286711	1289014	+	Cre07.g321900.t1.2	Cre07.g321900.t1.2		1286652,1287118,1287349,1287721,1288402,1288676	1286885,1287205,1287483,1288001,1288522,1289503	
chr7	1289516	1298831	1291425	1298197	-	NRAMP2	Cre07.g321951.t1.1		1298111,1297753,1297420,1297070,1296627,1296126,1295394,1294752,1294242,1293705,1293447,1292531,1292273,1291858,1289516	1298831,1297855,1297467,1297156,1296681,1296232,1295508,1294827,1294390,1293823,1293516,1292649,1292342,1292023,1291546	
chr7	1298886	1303851	1299214	1303789	-	CSD2	Cre07.g322000.t1.2		1303582,1303289,1303099,1302782,1302458,1301404,1300353,1300013,1299631,1298886	1303851,1303329,1303132,1302848,1302636,1301825,1300434,1300138,1299819,1299343	Similar to Sll0704 (Synechocystis Csd2), in particular amino acids around active site.
chr7	1303952	1305853	1303993	1304815	+	Cre07.g322050.t1.2	Cre07.g322050.t1.2		1303952,1304215,1304631	1304129,1304281,1305853	
chr7	1305856	1307981	1306839	1307870	-	UBQ5	Cre07.g322100.t1.1		1307777,1307342,1305856	1307981,1307701,1307124	contains an N-terminal ubiquitin domain, and similarity to conserved proteins of unknown function in C-terminal region; aligns well with At4g01000 up to residue 135
chr7	1308092	1323517	1308327	1322630	+	Cre07.g322176.t1.1	Cre07.g322176.t1.1		1308092,1309175,1311100,1311477,1312529,1313085,1313557,1314078,1314495,1315089,1315529,1316064,1316721,1317197,1317666,1320461,1320998,1321579,1322002,1322459	1308534,1309336,1311179,1311617,1312627,1313220,1313691,1314146,1314666,1315195,1315657,1316312,1316891,1317361,1317869,1320647,1321150,1321745,1322241,1323517	
chr7	1323751	1325441	1324311	1325316	-	CNX6	Cre07.g322250.t1.2		1325127,1324887,1323751	1325441,1325021,1324512	Molybdenum cofactor (MoCo) biosynthesis, involved in nitrogen assilmilation
chr7	1326356	1335841	1326775	1335119	+	XPD4	Cre07.g322300.t1.1		1326356,1327352,1328069,1328401,1328825,1329306,1329956,1330267,1330634,1331281,1332174,1332715,1333093,1333533,1334175,1334749	1327197,1327602,1328184,1328523,1329052,1329400,1329975,1330315,1331066,1331901,1332347,1332798,1333179,1333789,1334477,1335841	May contain additional coding sequence in intronic N-island PMID: 27175017
chr7	1336436	1352888	1337309	1350209	+	Cre07.g322350.t1.1	Cre07.g322350.t1.1		1336436,1336857,1337026,1337305,1337422,1339389,1340374,1340819,1342093,1342425,1343369,1343614,1344140,1345300,1347061,1347461,1348786,1349150,1349632,1350007	1336715,1336902,1337098,1337332,1338949,1340012,1340592,1341810,1342217,1342995,1343450,1343938,1345149,1346832,1347129,1348480,1348807,1349201,1349757,1352888	
chr7	1353152	1353885	1353474	1353859	-	Cre07.g322376.t1.1	Cre07.g322376.t1.1		1353152	1353885	
chr7	1353986	1357247	1354009	1356583	+	Cre07.g322400.t1.1	Cre07.g322400.t1.1		1353986,1354123,1356316	1354066,1356018,1357247	
chr7	1358090	1369295	1359002	1369122	-	Cre07.g322450.t1.1	Cre07.g322450.t1.1		1369005,1368666,1368371,1364100,1363827,1363504,1363091,1362234,1361719,1358090	1369295,1368872,1368443,1368067,1363946,1363626,1363208,1362477,1361904,1361424	Protein contains a SET domain with very weak similarity Arabidopsis thaliana ASHH1, SET26, SDG26 (At1g7671).  ChromoDB SDG342
chr7	1369436	1371335	1369530	1370963	+	MRPL19	Cre07.g322500.t1.2		1369436,1370882	1370388,1371335	
chr7	1371706	1376136	1371982	1375668	+	FAP240	Cre07.g322550.t1.2		1371706,1372257,1372704,1373199,1373577,1373873,1374615,1375092,1375466	1372083,1372331,1372799,1373355,1373624,1374267,1374822,1375159,1376136	Flagellar Associated Protein; found in the flagellar proteome
chr7	1377256	1387057	1377498	1386702	+	Cre07.g322600.t1.1	Cre07.g322600.t1.1		1377256,1378365,1379368,1379947,1380584,1380999,1381860,1382336,1382732,1383095,1383397,1383686,1384255,1385293,1386408	1378158,1379117,1379721,1380362,1380825,1381639,1381994,1382463,1382808,1383216,1383449,1383845,1384367,1386202,1387057	
chr7	1387186	1390037	1387437	1388665	+	Cre07.g322650.t1.2	Cre07.g322650.t1.2		1387186,1387832	1387606,1390037	
chr7	1390236	1391887	1390451	1391592	+	Cre07.g322700.t1.2	Cre07.g322700.t1.2		1390236,1390768	1390620,1391887	
chr7	1391900	1393805	1392492	1393298	-	Cre07.g322750.t1.2	Cre07.g322750.t1.2		1392951,1391900	1393805,1392814	
chr7	1395043	1397285	1395774	1397020	-	Cre07.g322800.t1.2	Cre07.g322800.t1.2		1396854,1395043	1397285,1396607	
chr7	1397470	1406335	1397794	1406100	-	Cre07.g322850.t1.1	Cre07.g322850.t1.1		1405440,1404587,1404000,1403394,1402932,1402101,1401754,1401373,1401016,1400608,1400371,1400001,1399465,1398294,1397470	1406335,1405243,1404332,1403782,1403164,1402753,1401888,1401500,1401092,1400729,1400423,1400160,1399577,1399212,1398088	
chr7	1406680	1410995	1407136	1410944	-	Cre07.g322884.t1.2	Cre07.g322884.t1.2		1410836,1410394,1410122,1409773,1409351,1408912,1408180,1407792,1406680	1410995,1410582,1410206,1409887,1409409,1409126,1408680,1407917,1407415	
chr7	1406680	1410735	1407136	1410703	-	Cre07.g322884.t2.1	Cre07.g322884.t2.1		1410682,1410394,1410122,1409773,1409351,1408912,1408180,1407792,1406680	1410735,1410582,1410206,1409887,1409409,1409126,1408680,1407917,1407415	
chr7	1410790	1420195	1411398	1420073	-	Cre07.g322900.t1.1	Cre07.g322900.t1.1		1420070,1419912,1419631,1419403,1418615,1418033,1417419,1416989,1416543,1416013,1415686,1415186,1414761,1414361,1413941,1412672,1412206,1410790	1420195,1419959,1419757,1419480,1419093,1418321,1417843,1417073,1416643,1416094,1415852,1415414,1414873,1414456,1414105,1412844,1412305,1411935	
chr7	1420916	1425621	1421036	1424639	+	NADK1	Cre07.g322950.t1.2		1420916,1421302,1421460,1421800,1422429,1422815,1423353,1423870,1424363	1421227,1421381,1421532,1421982,1422519,1422980,1423556,1424066,1425621	NAD kinase (ATP:NAD 2'-phosphotransferase, EC 2.7.1.23), an enzyme found in both prokaryotes and eukaryotes, generates the important pyridine nucleotide NADP from substrates ATP and NAD; similar to Arabidopsis NADK, the Chlamydomonas enzyme lacks the N-terminal domain found in the NADK2 isoform, including its calmodulin-binding site; probably chloroplast-located; null-allele mutant was isolated (PMID 29743196)
chr7	1426076	1430667	1426526	1429547	+	DP1	Cre07.g323000.t1.2		1426076,1426727,1426905,1427810,1428095,1428395,1428765	1426625,1426781,1427536,1427926,1428165,1428579,1430667	Transcription factor DP1.  Positive regulator that controls commitment and S/M size checkpoints. Mutations at this locus suppress the small-cell phenotype of mutants in the MAT3 gene encoding a retinoblastoma-like protein [Fang et al. 26, PMID:17413]
chr7	1430714	1433237	1430772	1431613	+	PEN2	Cre07.g323050.t1.2		1430714,1430975,1431196,1431596	1430878,1431079,1431348,1433237	homologous to presnilin enhancer 2; forms the gamma-secretase complex with presenilin, nicastrin and aph-1;possibly involved in presenilin processing (presenilinase); involved in regulated intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch
chr7	1433240	1439385	1433263	1439299	-	Cre07.g323100.t1.1	Cre07.g323100.t1.1		1439230,1439100,1438851,1438460,1437995,1437582,1436707,1435531,1434951,1434221,1433453,1433240	1439385,1439142,1438981,1438567,1438107,1437747,1436901,1436306,1435314,1434696,1434074,1433341	Serine/Threonine Protein Kinase Homolog 7, putative
chr7	1439506	1442187	1439852	1440738	+	TEH4	Cre07.g323150.t1.2		1439506,1440184	1439910,1442187	
chr7	1442280	1444195	1442572	1444082	-	Cre07.g323200.t1.2	Cre07.g323200.t1.2		1444058,1443858,1443583,1443268,1442280	1444195,1443932,1443705,1443384,1443016	
chr7	1444346	1447866	1444450	1447465	+	Cre07.g323250.t1.1	Cre07.g323250.t1.1		1444346,1444763,1445148,1445483,1445963,1446235,1446571,1447243	1444581,1444874,1445218,1445654,1446106,1446336,1446924,1447866	
chr7	1447890	1451365	1448466	1451110	-	Cre07.g323300.t1.1	Cre07.g323300.t1.1		1448893,1447890	1451365,1448730	
chr7	1454876	1455597	1455107	1455459	+	Cre07.g323326.t1.1	Cre07.g323326.t1.1		1454876	1455597	
chr7	1455665	1458865	1456097	1458533	-	Cre07.g323350.t1.2	Cre07.g323350.t1.2		1457006,1456711,1455665	1458865,1456812,1456448	
chr7	1458930	1460375	1459715	1460307	-	Cre07.g323400.t1.2	Cre07.g323400.t1.2		1460171,1458930	1460375,1459957	
chr7	1460486	1465217	1460845	1464995	+	Cre07.g323450.t1.2	Cre07.g323450.t1.2		1460486,1463520,1463926,1464197,1464620	1463071,1463626,1463992,1464340,1465217	
chr7	1465416	1469557	1465617	1469203	+	Cre07.g323500.t1.1	Cre07.g323500.t1.1		1465416,1465761,1466168,1466574,1467066,1467579,1467978,1468407,1468727	1465645,1465858,1466318,1466749,1467168,1467844,1468127,1468482,1469557	
chr7	1469572	1474095	1469845	1474013	-	PUS8	Cre07.g323550.t1.2		1473907,1473506,1473074,1472481,1471939,1471545,1471150,1469572	1474095,1473631,1473198,1472647,1472068,1471634,1471239,1470634	Pseudouridine synthase, mitochondrial precursor, putative
chr7	1474226	1476142	1474255	1475682	+	Cre07.g323600.t1.1	Cre07.g323600.t1.1		1474226,1474509,1474828,1475113,1475562	1474363,1474699,1474846,1475244,1476142	
chr7	1476206	1482326	1476242	1482208	+	Cre07.g323650.t1.2	Cre07.g323650.t1.2		1476206,1476461,1476840,1477246,1478625,1479476,1480004,1480452,1480772,1481092,1481395	1476343,1476584,1476998,1478322,1479248,1479718,1480150,1480617,1480954,1481279,1482326	
chr7	1482398	1486245	1483169	1486081	-	Cre07.g323700.t1.1	Cre07.g323700.t1.1		1485832,1485459,1484987,1484529,1482398	1486245,1485570,1485086,1484784,1484363	
chr7	1486366	1488550	1486430	1488492	+	Cre07.g323750.t1.1	Cre07.g323750.t1.1		1486366,1486559,1486996,1487399,1487767,1488165,1488363	1486490,1486753,1487142,1487476,1487954,1488252,1488550	
chr7	1488593	1489775	1489193	1489727	-	Cre07.g323800.t1.2	Cre07.g323800.t1.2		1489604,1489474,1488593	1489775,1489513,1489249	
chr7	1489868	1494398	1490111	1493474	+	Cre07.g323850.t1.2	Cre07.g323850.t1.2		1489868,1490857,1491177,1491370,1491785,1492049	1490474,1491005,1491254,1491532,1491841,1494398	related to NLI interacting factor
chr7	1495068	1496253	1495795	1496039	-	Cre07.g323890.t1.2	Cre07.g323890.t1.2		1495068	1496253	
chr7	1496424	1501039	1497045	1499635	+	Cre07.g323900.t1.1	Cre07.g323900.t1.1		1496424,1497037,1497841,1498229,1498585	1496598,1497330,1498097,1498448,1501039	related to NLI interacting factor
chr7	1501202	1505673	1502108	1505624	-	PHX23	Cre07.g323950.t1.2		1505501,1505125,1504363,1504073,1503816,1503521,1503196,1502847,1502488,1501202	1505673,1505271,1504957,1504221,1503974,1503612,1503303,1502920,1502627,1502222	
chr7	1505736	1516163	1506049	1516020	-	Cre07.g324000.t1.2	Cre07.g324000.t1.2		1514790,1514404,1514051,1513506,1512972,1512423,1511800,1510897,1510488,1510076,1509557,1509050,1508527,1508044,1507462,1507004,1506626,1505736	1516163,1514630,1514173,1513846,1513254,1512763,1512173,1511519,1510703,1510172,1509733,1509185,1508874,1508241,1507796,1507219,1506760,1506295	
chr7	1516277	1525175	1516592	1523825	+	CUL1	Cre07.g324050.t1.2		1516277,1516679,1516825,1517289,1517708,1518139,1518675,1519095,1519603,1520039,1520596,1520781,1521339,1521754,1522216,1522624,1522884,1523175,1523654	1516607,1516730,1516847,1517350,1517900,1518288,1518797,1519259,1519722,1520176,1520637,1520923,1521474,1521951,1522359,1522683,1522964,1523369,1525175	E3 ubiquitin ligase SCF complex subunit Cullin, putative
chr7	1525188	1531263	1526132	1530998	-	Cre07.g324100.t1.1	Cre07.g324100.t1.1		1529911,1527254,1527026,1525188	1531263,1529766,1527103,1526714	
chr7	1531484	1537204	1531897	1536223	+	Cre07.g324150.t1.1	Cre07.g324150.t1.1		1531484,1532226,1532548,1532793,1533216,1533472,1533745,1534295,1534668,1535175	1531963,1532298,1532635,1533072,1533307,1533549,1534097,1534470,1534993,1537204	
chr7	1537651	1544496	1537729	1541972	+	BTA1	Cre07.g324200.t1.2		1537651,1537982,1538200,1538500,1539026,1539276,1539534,1539942,1540168,1540460,1541384,1541926	1537913,1538097,1538410,1538644,1539119,1539348,1539628,1540031,1540260,1541098,1541598,1544496	Multidomain fusion of bacterial BtaA and BtaB-like domains for synthesis of the major extraplastidic lipid diacylglyceryl-N,N,N-trimethylhomoserine. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008
chr7	1544544	1547615	1545289	1547023	+	Cre07.g324211.t1.1	Cre07.g324211.t1.1		1544544,1545777,1546267,1546920	1545341,1545917,1546474,1547615	
chr7	1545684	1547615	1545808	1547023	+	Cre07.g324211.t2.1	Cre07.g324211.t2.1		1545684,1546267,1546920	1545917,1546474,1547615	
chr7	1547664	1550755	1547738	1549738	+	Cre07.g324222.t1.1	Cre07.g324222.t1.1		1547664,1548246,1549144,1549618	1547838,1548316,1549197,1550755	
chr7	1547664	1550535	1547738	1549738	+	Cre07.g324222.t2.1	Cre07.g324222.t2.1		1547664,1548246,1549144,1549618	1547838,1548316,1549197,1550535	
chr7	1547694	1548973	1547738	1548434	+	Cre07.g324222.t3.1	Cre07.g324222.t3.1		1547694,1548246	1547838,1548973	
chr7	1548170	1550535	1548253	1549738	+	Cre07.g324222.t4.1	Cre07.g324222.t4.1		1548170,1549144,1549618	1548316,1549197,1550535	
chr7	1549054	1550221	1549113	1549738	+	Cre07.g324222.t5.1	Cre07.g324222.t5.1		1549054,1549618	1549197,1550221	
chr7	1550988	1552605	1551075	1551910	+	Cre07.g324233.t1.1	Cre07.g324233.t1.1		1550988,1551498,1551790	1551231,1551551,1552605	belongs to a cluster of 5 closely-related genes on chromosome_7, with homologs only in Chlorophyceae;
chr7	1552654	1554425	1552689	1554024	+	Cre07.g324300.t1.2	Cre07.g324300.t1.2		1552654,1553107,1553482,1553901	1552783,1553168,1553535,1554425	
chr7	1554433	1557178	1554830	1556936	-	Cre07.g324350.t1.1	Cre07.g324350.t1.1		1556840,1555697,1554433	1557178,1556604,1555431	
chr7	1557225	1559548	1557653	1559354	-	VPS24	Cre07.g324400.t1.2		1559251,1559042,1558776,1558500,1558061,1557225	1559548,1559118,1558878,1558610,1558215,1557746	Hypothetical Conserved Protein. Similar to VPS24, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes)
chr7	1559644	1562683	1559700	1562044	+	Cre07.g324450.t1.2	Cre07.g324450.t1.2		1559644,1559913,1560266,1560806	1559772,1560133,1560639,1562683	
chr7	1562754	1568281	1564054	1566452	+	MMP22	Cre07.g324500.t1.2		1562754,1563732,1564038,1564573,1565100	1563550,1563928,1564366,1564906,1568281	Matrix metalloproteinase belonging to the M11 peptidase family
chr7	1568288	1573593	1569633	1573538	-	LDH1	Cre07.g324550.t1.1		1573268,1572762,1572368,1571927,1571614,1571290,1571033,1570761,1570508,1570092,1568288	1573593,1572815,1572451,1571987,1571728,1571428,1571080,1570876,1570622,1570205,1569783	
chr7	1573694	1575793	1573793	1575258	+	AP2S2	Cre07.g324600.t1.2		1573694,1574037,1574801,1575213	1573946,1574210,1574860,1575793	Expressed Protein. Sigma2-Adaptin. Clathrin Adaptor Complex Small Subunit, putative member of AP-2 complex
chr7	1575798	1578093	1577017	1577922	-	Cre07.g324650.t1.2	Cre07.g324650.t1.2		1577871,1577691,1577224,1575798	1578093,1577741,1577304,1577038	
chr7	1578194	1579965	1578239	1579223	+	Cre07.g324700.t1.2	Cre07.g324700.t1.2		1578194,1578596,1579024	1578269,1578678,1579965	
chr7	1580014	1583356	1580311	1582390	+	Cre07.g324750.t1.2	Cre07.g324750.t1.2		1580014,1580885,1581371,1582024	1580553,1581053,1581742,1583356	
chr7	1583358	1587993	1584218	1587753	-	SNE6	Cre07.g324800.t1.2		1587604,1587295,1586944,1586703,1586430,1586162,1585873,1585694,1585474,1585161,1584963,1584570,1583358	1587993,1587360,1587043,1586769,1586587,1586242,1585928,1585720,1585584,1585207,1585017,1584726,1584254	Cinnamoyl-CoA reductase/flavanone 4-reductase, a NAD-dependent epimerase/dehydratase.  Related to Dihydrokaempferol 4-reductase (DFR); related to plant haem peroxidase that are aldehyde oxidases, flavonol/cinnamyl alcohol reductases
chr7	1589114	1596798	1590257	1596668	+	Cre07.g324866.t1.1	Cre07.g324866.t1.1		1589114,1590220,1590901,1591815,1592113,1592523,1594239,1596404,1596566	1589614,1590453,1591653,1591939,1592306,1594023,1596239,1596424,1596798	
chr7	1601084	1608715	1601744	1606906	+	Cre07.g324932.t1.1	Cre07.g324932.t1.1		1601084,1602215,1602499,1602939,1603210	1601755,1602266,1602651,1603061,1608715	
chr7	1608757	1612723	1609270	1612645	-	CYP738A1	Cre07.g325000.t1.1		1612389,1612137,1611932,1611600,1611302,1610980,1610416,1609995,1608757	1612723,1612228,1611991,1611740,1611373,1611103,1610768,1610159,1609702	Cytochrome P450. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols.
chr7	1612778	1613383	1613157	1613356	-	Cre07.g325026.t1.1	Cre07.g325026.t1.1		1612778	1613383	
chr7	1613854	1621517	1614025	1620924	+	ELG15	Cre07.g325050.t1.1		1613854,1614127,1614643,1614941,1615112,1615353,1615640,1615815,1616063,1616790,1616950,1617224,1617554,1617881,1618110,1618347,1618759,1618985,1619288,1619492,1619687,1619890,1620132,1620417,1620710	1614055,1614321,1614806,1614981,1615171,1615492,1615699,1615904,1616138,1616869,1617016,1617269,1617692,1617954,1618126,1618545,1618795,1619059,1619390,1619541,1619731,1619971,1620295,1620475,1621517	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr7	1621548	1623853	1621991	1623213	-	Cre07.g325101.t1.1	Cre07.g325101.t1.1		1623810,1623604,1623375,1623207,1622833,1622571,1622303,1621548	1623853,1623658,1623443,1623270,1622984,1622645,1622447,1622126	
chr7	1623954	1637383	1624094	1637180	+	TGL12	Cre07.g325150.t1.1		1623954,1624750,1625223,1625508,1625842,1626128,1626458,1626751,1627129,1627432,1628445,1630076,1631260,1632444,1633628,1634812,1635996,1637180	1624599,1624895,1625351,1625558,1625952,1626266,1626590,1626925,1627185,1628337,1629503,1630687,1631871,1633055,1634239,1635423,1636607,1637383	
chr7	1637493	1639623	1637799	1639334	-	Cre07.g325200.t1.2	Cre07.g325200.t1.2		1639237,1638852,1638621,1638217,1637493	1639623,1638894,1638690,1638267,1637868	
chr7	1639794	1643605	1639924	1642708	+	Cre07.g325250.t1.2	Cre07.g325250.t1.2		1639794,1640222,1640771,1641080,1641421,1641809,1642145,1642442,1642657	1640045,1640350,1640874,1641147,1641504,1641914,1642222,1642489,1643605	
chr7	1645255	1652653	1646050	1652340	-	Cre07.g325300.t1.1	Cre07.g325300.t1.1		1651839,1650844,1650008,1649195,1648575,1645255	1652653,1651569,1650613,1649872,1649042,1648423	null-allele passenger mutation was isolated (PMID 29743196)
chr7	1652954	1665410	1653715	1663959	+	KIN10-1	Cre07.g325350.t1.1		1652954,1654397,1654713,1655354,1655843,1656461,1656924,1657397,1658802,1659714,1660502,1661067,1661953,1662535,1663047	1653859,1654557,1655106,1655485,1656271,1656593,1657047,1658576,1659541,1660233,1660909,1661693,1662207,1662849,1665410	kinesin-4/1 family, a combined family of standard kinesin-4 and kinesin-1 families (PMID: 16481395); null-allele mutant was isolated (PMID 29743196)
chr7	1665668	1671503	1666302	1671481	-	LEU3	Cre07.g325400.t1.2		1671134,1670643,1669268,1668924,1667578,1667060,1666651,1665668	1671503,1670754,1669422,1669020,1667713,1667252,1666743,1666372	Involved in branched chain amino acid biosynthesis (Leu Biosynthesis); probably chloroplastic; potential thioredoxin target [PMID: 15123830]
chr7	1671604	1676095	1671725	1675192	+	Cre07.g325450.t1.1	Cre07.g325450.t1.1		1671604,1672300,1672466,1673481,1673746,1673887,1674180,1674383,1674718,1674938	1671785,1672388,1673371,1673586,1673775,1674008,1674234,1674551,1674822,1676095	
chr7	1676902	1683972	1677144	1683143	+	CHLH1	Cre07.g325500.t1.1		1676902,1677290,1677409,1677698,1677965,1678331,1678630,1679184,1679553,1680005,1681687,1682554	1677210,1677325,1677514,1677858,1678099,1678492,1678928,1679341,1679812,1681519,1682399,1683972	Magnesium chelatase H subunit, chloroplast precursor; Chlamydomonas mutants with defects in this protein are chl1 and brs-1 and result in a brown phenotype [PMID: 11713666; PMID: 4436384]. Orthologous to the bacterial protein BchH [PMID: 9359397]; binds protoporphyrin and is acted upon by the ChlI:ChlD complex for magnesium insertion [PMID: 11469861]; interacts with GUN4 and may be involved in chloroplast signalling: Gene is also known as GUN5 in Arabidopsis thaliana [PMID: 11172074; 12574634]; transcript is light regulated and may be diurnal and/or circadian regulated [PMID: 16228385].
chr7	1684026	1690743	1685051	1690582	-	KDG3	Cre07.g325550.t1.1		1690540,1690259,1689914,1689507,1689060,1688800,1688062,1687650,1687059,1686644,1686353,1686058,1685334,1684026	1690743,1690332,1690064,1689581,1689213,1688891,1688583,1687791,1687198,1686745,1686463,1686165,1685940,1685143	protein kinase C activation
chr7	1690852	1692473	1690938	1692003	+	GRX5	Cre07.g325600.t1.1		1690852,1691074,1691389,1691583,1691880	1690987,1691234,1691452,1691671,1692473	Glutaredoxin 5, CGFS type, probably mitochondrial. PMID: 16328797
chr7	1692522	1694851	1692659	1693930	+	Cre07.g325650.t1.2	Cre07.g325650.t1.2		1692522,1693079,1693345,1693641,1693870	1692800,1693222,1693465,1693732,1694851	
chr7	2040860	2047895	2041007	2047308	-	Cre07.g325700.t1.2	Cre07.g325700.t1.2		2047795,2045634,2045052,2044546,2044105,2043764,2043284,2042914,2042613,2042289,2041978,2041666,2040860	2047895,2047573,2045396,2044616,2044282,2043802,2043358,2043018,2042693,2042390,2042064,2041752,2041178	SNF2-related helicase.  ChromoDB CHR3421
chr7	1708502	1712343	1711032	1712213	+	Cre07.g325709.t1.1	Cre07.g325709.t1.1		1708502,1710941,1711424	1709002,1711059,1712343	
chr7	1712392	1714793	1713133	1714322	+	Cre07.g325710.t1.1	Cre07.g325710.t1.1		1712392,1713289,1714205	1713139,1713411,1714793	
chr7	1716752	1720303	1716968	1719172	+	Cre07.g325711.t1.1	Cre07.g325711.t1.1		1716752,1717341,1717660,1717966,1718189,1718653,1719112	1716971,1717466,1717794,1718025,1718255,1718744,1720303	
chr7	1720539	1722308	1721588	1722072	-	Cre07.g325712.t1.1	Cre07.g325712.t1.1		1720539	1722308	
chr7	1722432	1728955	1722543	1728700	+	Cre07.g325713.t1.1	Cre07.g325713.t1.1		1722432,1723544,1723913,1724375,1724692,1724993,1725463,1725775,1726164,1726681,1727031,1727342,1727580,1727968,1728355	1723235,1723707,1724121,1724449,1724824,1725096,1725522,1725963,1726442,1726836,1727084,1727434,1727731,1728139,1728955	
chr7	1728991	1730781	1729214	1730601	-	Cre07.g325714.t1.1	Cre07.g325714.t1.1		1730481,1730176,1729853,1729559,1728991	1730781,1730351,1729976,1729660,1729358	
chr7	1730892	1735723	1730981	1735129	+	Cre07.g325715.t1.1	Cre07.g325715.t1.1		1730892,1731248,1731593,1731865,1732251,1732619,1732867,1733111,1733383,1733784,1734273,1734487,1734843	1731100,1731430,1731674,1732039,1732432,1732719,1732954,1733134,1733643,1734118,1734345,1734656,1735723	
chr7	1735857	1743015	1736087	1742560	+	DNL1	Cre07.g325716.t1.1		1735857,1736399,1736953,1737696,1738009,1738365,1738673,1738910,1739466,1739735,1740052,1740412,1740666,1740907,1741180,1741412,1741899,1742197,1742524	1736234,1736665,1737489,1737821,1738185,1738535,1738774,1739089,1739558,1739865,1740193,1740521,1740771,1741026,1741246,1741568,1742036,1742311,1743015	ATP-dependent DNA ligase; most similar to Arabidopsis LIG1 (AT1G08130); ts-lethal mutant was isolated (PMID 29743196)
chr7	1743582	1748263	1743899	1747137	+	Cre07.g325717.t1.1	Cre07.g325717.t1.1		1743582,1744259,1746270	1743944,1746091,1748263	
chr7	1749492	1757730	1749942	1755691	+	Cre07.g325718.t1.1	Cre07.g325718.t1.1		1749492,1750912,1752298,1753073,1755065,1755547	1750724,1752199,1752486,1753132,1755124,1757730	
chr7	1749492	1757730	1749942	1755691	+	Cre07.g325718.t2.1	Cre07.g325718.t2.1		1749492,1750912,1752298,1753073,1755065,1755550	1750724,1752199,1752486,1753132,1755124,1757730	
chr7	1749492	1757730	1749942	1755691	+	Cre07.g325718.t3.1	Cre07.g325718.t3.1		1749492,1750912,1752298,1755065,1755547	1750724,1752199,1752486,1755124,1757730	
chr7	1761112	1766122	1761434	1764522	+	Cre07.g325719.t1.1	Cre07.g325719.t1.1		1761112,1761625,1764225	1761536,1764078,1766122	
chr7	1766529	1779821	1768663	1779314	-	Cre07.g325720.t1.1	Cre07.g325720.t1.1		1776998,1775987,1775013,1774282,1772789,1772431,1771999,1771507,1771119,1770833,1770543,1770201,1769908,1769599,1769106,1766529	1779821,1776779,1775686,1774701,1774009,1772508,1772117,1771582,1771151,1770886,1770671,1770287,1769971,1769709,1769431,1768840	
chr7	1780043	1784271	1780322	1784243	-	Cre07.g325721.t1.1	Cre07.g325721.t1.1		1783775,1783035,1782486,1782064,1781747,1781279,1780043	1784271,1783497,1782618,1782193,1781830,1781378,1780996	
chr7	1784326	1788971	1784668	1788733	-	Cre07.g325722.t1.1	Cre07.g325722.t1.1		1788703,1788583,1788293,1787958,1787583,1786994,1786640,1786094,1785936,1785548,1785225,1784326	1788971,1788614,1788383,1788029,1787795,1787178,1786698,1786464,1785957,1785665,1785310,1784760	contains DEK-PC4 domain
chr7	1784326	1788971	1784668	1788733	-	Cre07.g325722.t2.1	Cre07.g325722.t2.1		1788703,1788583,1788293,1787958,1787583,1786994,1786640,1786121,1785936,1785548,1785225,1784326	1788971,1788614,1788383,1788029,1787795,1787178,1786698,1786464,1785957,1785665,1785310,1784760	contains DEK-PC4 domain
chr7	1784326	1788971	1784668	1788733	-	Cre07.g325722.t3.1	Cre07.g325722.t3.1		1788703,1788583,1788293,1787958,1787583,1786994,1786640,1786102,1785548,1785225,1784326	1788971,1788614,1788383,1788029,1787795,1787178,1786698,1786464,1785665,1785310,1784760	contains DEK-PC4 domain
chr7	1789150	1794447	1790714	1794320	-	ADK1	Cre07.g325723.t1.1		1793933,1793782,1793610,1793116,1792678,1792377,1792105,1791707,1791219,1789150	1794447,1793838,1793678,1793271,1792776,1792489,1792249,1791877,1791426,1791010	
chr7	1796672	1801911	1796884	1801274	+	PTP1	Cre07.g325724.t1.1		1796672,1797143,1797374,1797728,1798056,1798965,1799388,1799830,1800233,1800536	1796935,1797206,1797561,1797886,1798607,1799183,1799627,1800045,1800397,1801911	
chr7	1796672	1801911	1796884	1801274	+	PTP1	Cre07.g325724.t2.1		1796672,1797143,1797374,1797728,1798056,1798965,1799388,1799830,1800233,1800536	1796935,1797206,1797561,1797886,1798541,1799183,1799627,1800045,1800397,1801911	
chr7	1802112	1805123	1802144	1804671	+	Cre07.g325725.t1.1	Cre07.g325725.t1.1		1802112,1802795,1803143,1803684,1804135,1804431	1802453,1802843,1803357,1803771,1804211,1805123	
chr7	1808382	1810859	1808533	1809170	+	Cre07.g325726.t1.1	Cre07.g325726.t1.1		1808382,1809012	1808657,1810859	
chr7	1810866	1819241	1812017	1819135	-	Cre07.g325727.t1.1	Cre07.g325727.t1.1		1819043,1818164,1817793,1817109,1816949,1815642,1815424,1815068,1814633,1813810,1813009,1812460,1810866	1819241,1818945,1817945,1817590,1817026,1816895,1815507,1815160,1814812,1814005,1813614,1812608,1812218	
chr7	1819402	1821598	1819531	1820655	+	Cre07.g325728.t1.1	Cre07.g325728.t1.1		1819402,1819895,1820394	1819630,1820131,1821598	null-allele mutant was isolated (PMID 29743196)
chr7	1821626	1829511	1821846	1829267	-	Cre07.g325729.t1.1	Cre07.g325729.t1.1		1829123,1828623,1828295,1827965,1827227,1826377,1826176,1825552,1825175,1824842,1823672,1823245,1822868,1821626	1829511,1828967,1828453,1828144,1827794,1826990,1826241,1826043,1825384,1825069,1824549,1823428,1823006,1822625	null-allele passenger mutation was isolated (PMID 29743196)
chr7	1829566	1834451	1829868	1834322	-	Cre07.g325730.t1.1	Cre07.g325730.t1.1		1834130,1833962,1832828,1832474,1832130,1831504,1831143,1830674,1829566	1834451,1834005,1833810,1832643,1832234,1831800,1831313,1830893,1830482	
chr7	1834572	1838875	1834805	1837521	+	Cre07.g325731.t1.1	Cre07.g325731.t1.1		1834572,1834995,1835360,1835757,1836926,1837218	1834865,1835198,1835517,1836687,1836997,1838875	
chr7	1839567	1846161	1842237	1845785	-	OPR109	Cre07.g325732.t1.1		1845659,1845470,1845217,1845072,1844838,1844422,1844157,1843799,1843519,1842856,1839567	1846161,1845524,1845308,1845125,1844949,1844627,1844285,1844008,1843628,1843412,1842713	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr7	1846438	1850881	1846743	1850261	-	Cre07.g325733.t1.1	Cre07.g325733.t1.1		1850802,1850478,1849163,1848632,1846438	1850881,1850647,1850369,1848949,1848420	
chr7	1850982	1852796	1851082	1852393	+	FAP340	Cre07.g325734.t1.1		1850982,1851631,1852008,1852328	1851343,1851735,1852065,1852796	Similar to Nucleoside Diphosphate Kinase
chr7	1853142	1854522	1853444	1853974	+	Cre07.g325735.t1.1	Cre07.g325735.t1.1		1853142,1853736,1853906	1853554,1853770,1854522	
chr7	1854632	1862173	1854723	1861438	+	Cre07.g325736.t1.1	Cre07.g325736.t1.1		1854632,1855776,1856125,1857723,1858128,1858440,1858819,1859158,1859470,1859905,1860248,1860821,1861206	1855020,1855844,1856223,1857830,1858208,1858517,1858896,1859250,1859672,1859947,1860355,1860924,1862173	
chr7	1864625	1867761	1865137	1867515	-	Cre07.g325737.t1.1	Cre07.g325737.t1.1		1867334,1867089,1866466,1866144,1865732,1865378,1864625	1867761,1867169,1866950,1866305,1866019,1865558,1865137	
chr7	1869556	1879311	1870488	1878941	-	Cre07.g325738.t1.1	Cre07.g325738.t1.1		1878817,1878413,1877907,1874501,1874233,1873960,1873677,1873350,1872696,1872155,1871622,1871301,1869556	1879311,1878594,1878076,1877621,1874338,1874069,1873733,1873488,1873182,1872549,1871968,1871409,1871087	
chr7	1880192	1891937	1880345	1891069	+	Cre07.g325739.t1.1	Cre07.g325739.t1.1		1880192,1880502,1880973,1881616,1882193,1883123,1883898,1884230,1884521,1884857,1885312,1886080,1886824,1887267,1888231,1888551,1888837,1889107,1889327,1889693,1889941,1890402,1890747	1880427,1880677,1881269,1881976,1882860,1883655,1884007,1884315,1884647,1885005,1885896,1886647,1887095,1888095,1888370,1888680,1888899,1889141,1889386,1889757,1890064,1890505,1891937	
chr7	1892584	1898071	1894240	1897683	-	PTB3	Cre07.g325740.t1.1		1897659,1897493,1897098,1896822,1896303,1895726,1895036,1892584	1898071,1897550,1897279,1896925,1896557,1896069,1895527,1894740	Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; clusters with PTB3 on scaffold 81. PTB2 and PTB3 are flanked by transposable element sequences, suggesting a possible means of gene duplication.
chr7	1898119	1903081	1899275	1902663	-	PTB2	Cre07.g325741.t1.1		1902639,1902459,1902037,1901754,1901329,1900768,1900003,1898119	1903081,1902516,1902218,1901857,1901583,1901111,1900494,1899775	Gi|21218058|dbj|AB074881.1 Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; clusters with PTB3 on scaffold 81. PTB2 and PTB3 are flanked by transposable element sequences, suggesting a possible means o
chr7	1903136	1904441	1903330	1904311	-	Cre07.g325742.t1.1	Cre07.g325742.t1.1		1904253,1903767,1903136	1904441,1903856,1903353	
chr7	1906192	1908689	1906391	1908140	+	GRX3	Cre07.g325743.t1.1		1906192,1906536,1906765,1907469,1908084	1906448,1906595,1906869,1907514,1908689	Glutaredoxin 3, CGFS type, probably chloroplastic. PMID: 16328797. Characterized by Zaffagnini et al.  2008 [PMID: 18216016].
chr7	1908752	1922113	1908856	1921196	+	Cre07.g325744.t1.1	Cre07.g325744.t1.1		1908752,1909350,1909923,1911221,1911890,1912348,1912836,1913048,1913409,1913683,1914223,1914610,1914962,1915446,1915750,1916293,1916632,1917082,1917550,1918056,1918586,1918798,1919341,1919730,1920584	1909034,1909426,1909986,1911312,1911994,1912450,1912906,1913104,1913463,1913855,1914360,1914670,1915111,1915527,1915957,1916391,1916761,1917233,1917713,1918269,1918669,1918897,1919483,1920365,1922113	
chr7	1922203	1924781	1922822	1924632	-	Cre07.g325745.t1.1	Cre07.g325745.t1.1		1924445,1924070,1923681,1923372,1922203	1924781,1924134,1923734,1923399,1922914	
chr7	1925292	1926463	1925543	1926400	+	RPL38	Cre07.g325746.t1.1		1925292,1925640,1926377	1925546,1925823,1926463	Component of cytosolic 80S ribosome and 60S large subunit
chr7	1926512	1928013	1926739	1927043	+	Cre07.g325747.t1.1	Cre07.g325747.t1.1		1926512	1928013	
chr7	1928076	1942881	1928929	1942545	-	Cre07.g325748.t1.1	Cre07.g325748.t1.1		1942485,1942328,1941742,1941130,1940850,1940503,1940017,1939534,1939139,1938794,1938477,1938131,1937830,1937551,1937187,1936783,1936380,1935935,1935381,1934746,1933981,1933112,1932779,1932504,1932327,1932081,1931787,1931428,1930794,1930373,1930025,1929820,1929373,1928076	1942881,1942359,1941827,1941290,1940906,1940588,1940116,1939647,1939230,1938912,1938568,1938232,1937903,1937671,1937286,1936855,1936514,1936166,1935675,1935170,1934118,1933400,1932861,1932614,1932419,1932134,1931907,1931531,1930943,1930491,1930063,1929907,1929511,1929171	
chr7	1943846	1953191	1944234	1952973	-	Cre07.g325749.t1.1	Cre07.g325749.t1.1		1952682,1949687,1949177,1948783,1948385,1947923,1947515,1947095,1946668,1946203,1945636,1945184,1943846	1953191,1952479,1949465,1948959,1948604,1948081,1947730,1947221,1946761,1946303,1945936,1945388,1944856	
chr7	1953352	1957576	1953572	1957050	+	FAP258	Cre07.g325751.t1.1		1953352,1953904,1954340,1954638,1956387	1953749,1954041,1954387,1955876,1957576	Initially annotated as FAP258, Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802], but gene model was later split
chr7	1957902	1963723	1958023	1963334	+	Cre07.g325752.t1.1	Cre07.g325752.t1.1		1957902,1958116,1958484,1958788,1959252,1960267,1960814	1958039,1958261,1958590,1958983,1960016,1960689,1963723	Initially annotated as FAP258, Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802], but gene model was later split
chr7	1963822	1967011	1966642	1966934	-	Cre07.g325753.t1.1	Cre07.g325753.t1.1		1963822	1967011	
chr7	1967066	1976381	1967109	1976187	-	Cre07.g325754.t1.1	Cre07.g325754.t1.1		1975980,1975536,1975080,1974182,1973150,1972665,1970737,1970387,1970073,1969383,1969072,1968692,1968286,1967960,1967576,1967066	1976381,1975642,1975251,1974736,1973611,1972772,1972265,1970507,1970231,1969529,1969152,1968843,1968392,1968008,1967695,1967236	
chr7	1977115	1979183	1977701	1979154	-	Cre07.g325755.t1.1	Cre07.g325755.t1.1		1979079,1978883,1978571,1978237,1977957,1977115	1979183,1978926,1978640,1978323,1978015,1977744	
chr7	1979282	1990033	1979978	1988707	+	Cre07.g325756.t1.1	Cre07.g325756.t1.1		1979282,1979907,1980722,1981057,1981371,1981807,1982496,1983242,1983694,1984299,1986297,1988281	1979644,1980253,1980808,1981165,1981576,1981907,1982580,1983422,1983886,1985746,1988117,1990033	
chr7	1990082	1994013	1990267	1992331	+	Cre07.g325757.t1.1	Cre07.g325757.t1.1		1990082,1990534,1991026,1991320,1991604,1991849,1992195	1990306,1990584,1991211,1991443,1991727,1991944,1994013	
chr7	1994072	1996033	1994103	1995923	+	Cre07.g325758.t1.1	Cre07.g325758.t1.1		1994072,1995923	1995169,1996033	
chr7	1996086	2010000	1998809	2010000	-	Cre07.g325759.t1.1	Cre07.g325759.t1.1		2009719,2009185,2008404,2008021,2007382,2006970,2004951,2004235,2003694,2002794,2002120,2001722,2001254,2001014,2000487,2000152,1999708,1996086	2010000,2009323,2008909,2008125,2007759,2007062,2006378,2004435,2003880,2003330,2002216,2001827,2001328,2001060,2000656,2000174,1999826,1999461	
chr7	2013740	2019255	2014358	2018898	-	MAW10	Cre07.g325760.t1.1		2018829,2017410,2013740	2019255,2018615,2015528	Contains a predicted C-terminal transmembrane domain.
chr7	2019756	2030720	2019906	2030552	+	Cre07.g325761.t1.1	Cre07.g325761.t1.1		2019756,2020316,2020597,2021527,2022223,2022619,2022918,2023262,2023657,2024008,2024274,2025540,2026037,2026696,2027183,2027780,2028272,2029971,2030280	2020126,2020347,2020857,2021694,2022302,2022691,2023021,2023352,2023799,2024083,2025287,2025708,2026235,2026724,2027506,2027978,2028300,2029997,2030720	May contain additional coding sequence in intronic N-island PMID: 27175017
chr7	2048046	2058557	2048281	2057998	+	DRC11	Cre07.g325762.t1.1		2048046,2048417,2048821,2049389,2049764,2050240,2050548,2050993,2051449,2052166,2052680,2053056,2053504,2053758,2054136,2054578,2055017,2055384,2055914,2056383,2057005,2057400,2057920	2048292,2048507,2048919,2049448,2049844,2050308,2050667,2051190,2051616,2052336,2052826,2053151,2053611,2053814,2054294,2054706,2055074,2055529,2056036,2056478,2057172,2057477,2058557	Found in the flagellar proteome; identified in the flagellar basal body proteome as FBB15 [PMID: 15137946]; upregulated by deflagellation
chr7	2058656	2062354	2058908	2061725	+	MAW1	Cre07.g325812.t1.1		2058656,2060180,2060525	2060054,2060314,2062354	Contains predicted C-termina GPI-anchor signal
chr7	2062360	2065045	2062797	2064583	-	MAW8	Cre07.g325850.t1.1		2064427,2064208,2062360	2065045,2064342,2063997	Contains predicted C-termina GPI-anchor signal
chr7	2065100	2071905	2067970	2071282	-	ZSP1	Cre07.g325950.t1.2		2071621,2071276,2070883,2070556,2070119,2069659,2069134,2068272,2065100	2071905,2071443,2070994,2070632,2070181,2069721,2069437,2068876,2068045	ZSP1 ORF is found in the 3'UTR, encoding hydroxyproline-rich glycoprotein with GPI-anchor signal
chr7	2072006	2072946	2072132	2072382	+	Cre07.g325980.t1.1	Cre07.g325980.t1.1		2072006	2072946	
chr7	2073860	2080865	2074360	2080831	-	Cre07.g326010.t1.2	Cre07.g326010.t1.2		2080546,2078603,2077527,2077069,2076710,2075518,2074668,2073860	2080865,2080236,2078388,2077136,2076836,2076428,2075175,2074375	
chr7	2081220	2093405	2081808	2093281	-	KIL8	Cre07.g326050.t1.1		2093160,2092897,2092575,2092322,2091982,2091733,2091373,2090942,2090415,2089407,2089140,2088805,2088438,2087915,2087551,2087299,2086828,2086501,2086245,2085959,2085676,2085325,2084900,2084525,2084202,2083743,2083381,2082795,2082296,2081220	2093405,2092913,2092637,2092483,2092096,2091848,2091624,2091190,2090779,2090316,2089253,2088891,2088623,2088160,2087736,2087410,2087015,2086665,2086382,2086063,2085837,2085519,2085172,2084703,2084340,2083901,2083569,2083062,2082614,2082133	Putative kinesin motor-like protein, closest match to kinesin-8 family.  No sequence gap to account for poor assingment by HMM search
chr7	2096540	2099056	2097128	2098449	-	Cre07.g326100.t1.2	Cre07.g326100.t1.2		2098744,2096540	2099056,2098492	
chr7	2096540	2099037	2097128	2098449	-	Cre07.g326100.t2.1	Cre07.g326100.t2.1		2098744,2096540	2099037,2098511	
chr7	2099176	2104610	2099224	2102274	+	Cre07.g326150.t1.1	Cre07.g326150.t1.1		2099176,2099418,2099650,2099977,2100201,2100693	2099269,2099495,2099781,2100041,2100552,2104610	
chr7	2106285	2108185	2106797	2107994	-	Cre07.g326200.t1.2	Cre07.g326200.t1.2		2107834,2107418,2106285	2108185,2107535,2107218	
chr7	2108252	2110516	2108614	2110416	-	Cre07.g326250.t1.1	Cre07.g326250.t1.1		2110050,2109338,2108252	2110516,2109401,2108892	
chr7	2110570	2118265	2110911	2118123	-	Cre07.g326300.t1.2	Cre07.g326300.t1.2		2118006,2117769,2117423,2117005,2116611,2116366,2115806,2115418,2114876,2114024,2112899,2112585,2112178,2111744,2111354,2110570	2118265,2117920,2117529,2117276,2116745,2116405,2116062,2115586,2115213,2114162,2113071,2112725,2112258,2111907,2111510,2111130	
chr7	2118366	2121517	2118512	2121497	+	Cre07.g326350.t1.1	Cre07.g326350.t1.1		2118366,2118960,2119278,2119622,2119863,2120201,2120514,2120948,2121344	2118687,2119053,2119493,2119694,2119993,2120286,2120653,2121148,2121517	
chr7	2121520	2124419	2122318	2124328	-	Cre07.g326400.t1.2	Cre07.g326400.t1.2		2124265,2123924,2123676,2123363,2123080,2122576,2121520	2124419,2124184,2123741,2123446,2123154,2122661,2122394	
chr7	2124536	2131027	2124606	2130163	+	VPS5B	Cre07.g326450.t1.1		2124536,2125325,2125973,2126433,2126841,2127690,2128201,2128653,2128993,2129315,2129636,2130082	2124988,2125644,2126098,2126559,2127019,2127824,2128353,2128718,2129076,2129398,2129791,2131027	Hypothetical Conserved Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking.
chr7	2131030	2135775	2131913	2135706	-	Cre07.g326500.t1.2	Cre07.g326500.t1.2		2135658,2135133,2134326,2133898,2133604,2133361,2132942,2132615,2132166,2131030	2135775,2135298,2134417,2133969,2133663,2133431,2133123,2132766,2132393,2131943	
chr7	2135964	2141745	2138309	2141038	-	Cre07.g326550.t1.1	Cre07.g326550.t1.1		2140979,2135964	2141745,2140713	
chr7	2142096	2153103	2142310	2152359	+	PDI6	Cre07.g326600.t1.2		2142096,2142889,2143346,2143640,2143902,2144169,2144909,2145379,2145894,2146204,2146752,2147060,2147534,2147919,2148494,2148949,2149334,2149833,2149992,2150385,2150734,2151187,2151511,2152248	2142334,2142894,2143417,2143735,2143971,2144299,2144995,2145450,2145967,2146385,2146810,2147191,2147622,2148027,2148592,2149034,2149470,2149876,2150096,2150477,2150828,2151274,2151753,2153103	
chr7	2156932	2159693	2157435	2159200	+	Cre07.g326626.t1.1	Cre07.g326626.t1.1		2156932,2157859,2158458	2157475,2158126,2159693	
chr7	2159742	2161648	2160322	2161131	+	Cre07.g326650.t1.2	Cre07.g326650.t1.2		2159742,2160246,2160956	2159976,2160630,2161648	
chr7	2161852	2164533	2162502	2164104	+	Cre07.g326700.t1.1	Cre07.g326700.t1.1		2161852,2162468,2163116	2162270,2162756,2164533	
chr7	2164611	2169941	2166090	2169795	-	Cre07.g326750.t1.1	Cre07.g326750.t1.1		2169744,2169471,2168044,2167513,2167201,2166894,2164611	2169941,2169627,2169219,2167867,2167261,2166974,2166660	
chr7	2169996	2177681	2171494	2177558	-	Cre07.g326800.t1.1	Cre07.g326800.t1.1		2177428,2177119,2176922,2176414,2175366,2175029,2174458,2174115,2173680,2173180,2172869,2172451,2171913,2169996	2177681,2177233,2176976,2176485,2175467,2175116,2174570,2174183,2173773,2173325,2173032,2172637,2172014,2171581	dephosphorylates phosphoserine and phosphothreonine residues; contains TPR domain
chr7	2177936	2181641	2178932	2181155	-	Cre07.g326833.t1.1	Cre07.g326833.t1.1		2181094,2180582,2177936	2181641,2180720,2180262	
chr7	2177936	2181641	2178932	2181155	-	Cre07.g326833.t2.1	Cre07.g326833.t2.1		2181094,2180582,2177936	2181641,2180720,2180259	
chr7	2181738	2184522	2182618	2184392	-	Cre07.g326900.t1.2	Cre07.g326900.t1.2		2184339,2184030,2183790,2183513,2183164,2182860,2181738	2184522,2184120,2183877,2183608,2183284,2182997,2182706	
chr7	2184576	2187961	2185371	2187848	-	Cre07.g326950.t1.1	Cre07.g326950.t1.1		2187787,2187439,2187056,2186430,2185977,2185698,2184576	2187961,2187653,2187145,2186556,2186024,2185762,2185521	
chr7	2188062	2193003	2188128	2192500	+	Cre07.g327000.t1.2	Cre07.g327000.t1.2		2188062,2188763,2189178,2189482,2189954,2190359,2191130,2191473,2192034	2188344,2188846,2189297,2189680,2190135,2190799,2191222,2191621,2193003	
chr7	2193122	2197423	2193477	2196955	+	Cre07.g327050.t1.2	Cre07.g327050.t1.2		2193122,2194348	2194224,2197423	
chr7	2197482	2200834	2197774	2200583	+	Cre07.g327079.t1.2	Cre07.g327079.t1.2		2197482,2198395,2198848,2199175,2199770,2200252	2198105,2198514,2198941,2199298,2199846,2200834	
chr7	2200841	2203751	2201238	2203701	-	Cre07.g327100.t1.2	Cre07.g327100.t1.2		2203511,2203208,2202811,2202487,2201721,2200841	2203751,2203401,2202951,2202553,2202058,2201466	
chr7	2203852	2212273	2204026	2211587	+	Cre07.g327150.t1.1	Cre07.g327150.t1.1		2203852,2204507,2204964,2205399,2205895,2206293,2206639,2207164,2207479,2209035,2209958	2204299,2204643,2205151,2205523,2205990,2206422,2206818,2207329,2208850,2209724,2212273	
chr7	2212372	2216133	2212437	2215768	+	Cre07.g327200.t1.1	Cre07.g327200.t1.1		2212372,2212651,2213046,2213532,2214143,2214654,2214939,2215336	2212548,2212755,2213296,2213949,2214399,2214753,2215100,2216133	
chr7	2216192	2221183	2216348	2220238	+	Cre07.g327226.t1.1	Cre07.g327226.t1.1		2216192,2218095,2218766,2219145,2219430,2219839	2218041,2218116,2218903,2219244,2219591,2221183	
chr7	2221232	2226826	2221698	2225901	+	Cre07.g327250.t1.1	Cre07.g327250.t1.1		2221232,2224187,2224716	2224050,2224273,2226826	
chr7	2226846	2235091	2227077	2234889	-	Cre07.g327300.t1.1	Cre07.g327300.t1.1		2234778,2234380,2234073,2233730,2233419,2233135,2232723,2232512,2232154,2231784,2231441,2231045,2230671,2229804,2229433,2229098,2228590,2228087,2226846	2235091,2234502,2234158,2233841,2233472,2233257,2232818,2232562,2232219,2231957,2231515,2231247,2230799,2230337,2229520,2229238,2228870,2228337,2227748	
chr7	2226846	2235091	2227077	2234889	-	Cre07.g327300.t2.1	Cre07.g327300.t2.1		2234778,2234380,2234073,2233730,2233419,2233135,2232723,2232512,2232154,2231784,2231441,2231045,2230671,2229804,2229433,2229098,2228590,2228087,2226846	2235091,2234502,2234158,2233841,2233472,2233257,2232818,2232562,2232219,2231957,2231515,2231247,2230799,2230337,2229520,2229238,2228870,2228334,2227748	
chr7	2235242	2239413	2235391	2236563	+	Cre07.g327317.t1.1	Cre07.g327317.t1.1		2235242,2236161	2235394,2239413	
chr7	2240282	2240863	2240320	2240597	+	Cre07.g327333.t1.1	Cre07.g327333.t1.1		2240282	2240863	
chr7	2240866	2243461	2241287	2243455	-	CDPK8	Cre07.g327350.t1.2		2243408,2242961,2242717,2242396,2241841,2241656,2240866	2243461,2243047,2242795,2242437,2241957,2241715,2241392	
chr7	2243562	2245385	2243650	2244820	+	NUO9	Cre07.g327400.t1.1		2243562,2244777	2244456,2245385	NADH:ubiquinone oxidoreductase (Complex I) chain 9 subunit, 31 kDa-like protein (= NAD9), mitochondrial; GI:33943525, PMID: 15450959; PMID: 15710684
chr7	2246422	2250504	2246764	2248952	+	DNJ34	Cre07.g327450.t1.2		2246422,2246756,2247115,2247460,2247828	2246578,2246857,2247227,2247602,2250504	DnaJ-like protein, perhaps targeted to the chloroplast (contains N-terminal extension that is predicted by ChloroP to be chloroplast transit peptide); no homology with other proteins in protein database
chr7	2251985	2256131	2252396	2255839	-	Cre07.g327500.t1.2	Cre07.g327500.t1.2		2255796,2255569,2255359,2255082,2254733,2254449,2253913,2253419,2253035,2252801,2251985	2256131,2255642,2255412,2255144,2254786,2254522,2254099,2253640,2253184,2252887,2252579	
chr7	2256206	2258391	2256575	2258360	-	Cre07.g327550.t1.2	Cre07.g327550.t1.2		2257906,2257607,2257179,2256206	2258391,2257683,2257263,2256871	
chr7	2258492	2262793	2258521	2262636	+	Cre07.g327600.t1.2	Cre07.g327600.t1.2		2258492,2258850,2259296,2259697,2260404,2260876,2261206,2262239,2262548	2258650,2258972,2259352,2260132,2260513,2260980,2261896,2262320,2262793	
chr7	2258492	2262793	2258521	2262636	+	Cre07.g327600.t2.1	Cre07.g327600.t2.1		2258492,2258850,2259296,2259697,2260404,2260876,2261206,2262239,2262548	2258650,2258972,2259352,2260132,2260504,2260980,2261896,2262320,2262793	
chr7	2262876	2271391	2263718	2271359	-	Cre07.g327650.t1.1	Cre07.g327650.t1.1		2271335,2271023,2270777,2269384,2268962,2268490,2268127,2267637,2267438,2267152,2266856,2266572,2266277,2265882,2265390,2265093,2264845,2264273,2262876	2271391,2271096,2270957,2270384,2269105,2268664,2268217,2267739,2267487,2267237,2266939,2266587,2266341,2266085,2265559,2265194,2264876,2264510,2263878	
chr7	2271466	2274411	2271978	2274205	-	Cre07.g327687.t1.2	Cre07.g327687.t1.2		2274133,2273909,2273578,2272991,2272692,2272381,2271466	2274411,2273968,2273664,2273387,2272801,2272449,2272041	
chr7	2274522	2280743	2274777	2280239	+	Cre07.g327700.t1.1	Cre07.g327700.t1.1		2274522,2274960,2275185,2275606,2276920,2277295,2277668,2277939,2278645,2279015,2279375,2279696,2280131	2274834,2275043,2275382,2276688,2277011,2277468,2277759,2278493,2278721,2279197,2279516,2279973,2280743	
chr7	2280792	2292053	2280814	2290849	+	Cre07.g327750.t1.1	Cre07.g327750.t1.1		2280792,2281072,2281783,2282160,2283111,2283686,2284271,2284606,2284804,2285169,2285608,2286029,2286441,2287308,2287701,2288183,2288477,2288951,2289454,2289741,2290090,2290528	2280978,2281366,2281940,2282766,2283182,2283865,2284387,2284647,2284893,2285336,2285727,2286095,2287125,2287482,2287757,2288329,2288694,2289044,2289535,2289802,2290314,2292053	Homology to osmosensitive TRP channel
chr7	2292076	2298431	2292240	2298047	-	Cre07.g327800.t1.1	Cre07.g327800.t1.1		2297882,2297564,2297282,2296983,2296409,2296085,2295732,2295361,2294985,2294595,2294381,2294002,2293548,2293119,2292685,2292076	2298431,2297650,2297357,2297053,2296531,2296244,2295804,2295515,2295103,2294730,2294463,2294112,2293662,2293210,2292892,2292356	
chr7	2306251	2311921	2306659	2311799	-	Cre07.g327850.t1.1	Cre07.g327850.t1.1		2309762,2309311,2308900,2308651,2308115,2307626,2307093,2306251	2311921,2309451,2309115,2308728,2308378,2307829,2307341,2306812	
chr7	2312042	2317953	2312183	2315461	+	Cre07.g327900.t1.1	Cre07.g327900.t1.1		2312042,2312576,2312854,2313196,2313677,2313968,2314601,2315110	2312343,2312712,2312938,2313272,2313779,2314359,2314789,2317953	null-allele mutant was isolated (PMID 29743196)
chr7	2317956	2327641	2317976	2327078	-	MAW9	Cre07.g327950.t1.1		2327356,2326927,2326417,2324124,2323710,2323112,2322689,2322084,2321738,2320642,2317956	2327641,2327221,2326766,2326201,2323915,2323493,2322918,2322507,2321940,2321579,2320457	Contains a predicted C-terminal transmembrane domain.
chr7	2328086	2328851	2328484	2328662	-	Cre07.g327976.t1.1	Cre07.g327976.t1.1		2328086	2328851	
chr7	2328900	2333451	2330337	2333054	-	Cre07.g328000.t1.2	Cre07.g328000.t1.2		2332991,2332839,2332687,2332063,2328900	2333451,2332892,2332756,2332416,2331815	
chr7	2333735	2338512	2334137	2338301	-	Cre07.g328050.t1.1	Cre07.g328050.t1.1		2338211,2338055,2337788,2337347,2336884,2336476,2335606,2335313,2335021,2334614,2333735	2338512,2338117,2337834,2337403,2337026,2336610,2335764,2335462,2335094,2334704,2334232	
chr7	2338625	2340743	2338656	2340686	+	Cre07.g328075.t1.1	Cre07.g328075.t1.1		2338625,2338979,2339175,2339867,2340333,2340627	2338749,2339040,2339464,2339952,2340444,2340743	
chr7	2338625	2340743	2338656	2340686	+	Cre07.g328075.t2.1	Cre07.g328075.t2.1		2338625,2338979,2339175,2339867,2340333,2340630	2338749,2339040,2339464,2339952,2340444,2340743	
chr7	2338625	2341103	2338656	2340686	+	Cre07.g328075.t3.1	Cre07.g328075.t3.1		2338625,2338979,2339175,2339867,2340333,2340630	2338749,2339040,2339464,2339952,2340444,2341103	
chr7	2340746	2347541	2341608	2347410	-	PDI4	Cre07.g328150.t1.1		2347237,2347115,2346768,2345598,2345190,2344806,2344445,2343851,2343565,2343215,2342868,2342331,2341988,2340746	2347541,2347130,2346878,2345684,2345286,2344932,2344571,2343964,2343615,2343302,2343005,2342368,2342074,2341716	Protein Disulfide Isomerase 4, P5 type. Possible ER localisation. PMID: 16143836
chr7	2341107	2347541	2341608	2347410	-	PDI4	Cre07.g328150.t2.1		2347237,2347115,2346768,2345598,2345190,2344806,2344445,2343851,2343565,2343215,2342868,2342331,2341988,2341107	2347541,2347130,2346878,2345684,2345286,2344932,2344571,2343964,2343615,2343302,2343005,2342368,2342074,2341716	Protein Disulfide Isomerase 4, P5 type. Possible ER localisation. PMID: 16143836
chr7	2348066	2351898	2348168	2351333	+	PSBP6	Cre07.g328200.t1.2		2348066,2348459,2349066,2349280,2349686,2350072,2350401,2350731,2351209	2348283,2348625,2349129,2349374,2349751,2350130,2350452,2350903,2351898	shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OEC23, 23 kDa subunit of oxygen evolving complex [PMID: 3468511]; orthologous to At5g11450; targeted to thylakoid lumen by TAT pathway
chr7	2352034	2354825	2352156	2354422	+	Cre07.g328226.t1.1	Cre07.g328226.t1.1		2352034,2352931,2353414,2353834	2352637,2353120,2353618,2354825	
chr7	2355314	2365166	2355409	2363590	+	Cre07.g328250.t1.2	Cre07.g328250.t1.2		2355314,2358951,2359546,2359994,2360413,2360920,2361134,2361809,2362204	2358634,2359148,2359620,2360071,2360526,2360979,2361577,2361931,2365166	
chr7	2365224	2366255	2365265	2366230	+	Cre07.g328300.t1.2	Cre07.g328300.t1.2		2365224,2365522	2365454,2366255	
chr7	2367038	2370283	2368270	2370257	-	FAP207	Cre07.g328350.t1.2		2370170,2369969,2369696,2369193,2368635,2367038	2370283,2370053,2369844,2369347,2368825,2368374	Flagellar Associated Protein, found in the flagellar proteome; null-allele mutant was isolated (PMID 29743196)
chr7	2370330	2374053	2370761	2373924	-	Cre07.g328400.t1.2	Cre07.g328400.t1.2		2373833,2373516,2373236,2373078,2372473,2371970,2371624,2371287,2370330	2374053,2373698,2373355,2373104,2372700,2372371,2371732,2371410,2370926	
chr7	2374174	2376120	2374431	2375357	+	Cre07.g328450.t1.2	Cre07.g328450.t1.2		2374174,2374831,2375229	2374533,2374891,2376120	
chr7	2376128	2383893	2376997	2383521	-	ARS17	Cre07.g328500.t1.1		2383496,2383275,2382521,2382070,2381091,2380356,2380009,2379725,2379476,2379077,2378756,2378428,2378133,2377694,2377454,2376128	2383893,2383426,2382665,2382266,2381287,2380618,2380083,2379788,2379530,2379185,2378897,2378458,2378219,2377975,2377476,2377319	
chr7	2383948	2397143	2384598	2396993	-	VPS18	Cre07.g328550.t1.1		2396811,2396450,2395779,2395393,2394918,2394390,2393560,2393129,2392661,2392132,2391793,2391168,2390699,2389889,2389348,2388885,2388639,2388168,2387316,2386642,2386228,2385836,2385507,2384921,2383948	2397143,2396558,2395993,2395471,2395006,2394543,2394136,2393296,2392779,2392254,2391856,2391544,2390786,2390018,2389459,2388985,2388680,2388361,2387381,2387009,2386349,2385921,2385613,2385019,2384724	Similar to VPS18/dor, a component of the VPS-C complex required for vacuolar targeting
chr7	2397268	2403863	2397748	2403736	-	Cre07.g328600.t1.1	Cre07.g328600.t1.1		2403724,2403054,2402366,2402174,2401963,2401495,2401137,2400623,2400330,2399586,2399285,2398845,2398505,2397268	2403863,2403119,2402414,2402223,2402022,2401760,2401194,2400974,2400391,2399989,2399368,2398963,2398691,2398076	
chr7	2404004	2409815	2404393	2409191	+	Cre07.g328700.t1.1	Cre07.g328700.t1.1		2404004,2407067,2407759,2408426,2408781,2409135	2406887,2407606,2408215,2408542,2408980,2409815	
chr7	2409817	2411023	2410320	2410888	-	Cre07.g328750.t1.2	Cre07.g328750.t1.2		2410844,2410592,2409817	2411023,2410662,2410421	
chr7	2411746	2418961	2411833	2417307	+	NSG13	Cre07.g328800.t1.1		2411746,2412151,2412575,2412890,2413271,2413692,2414144,2414514,2414872,2415142,2415547,2416238,2416647,2417169	2411876,2412314,2412633,2413050,2413360,2413808,2414264,2414592,2414907,2415275,2415929,2416325,2416797,2418961	predicted to contain 3 transmembrane helices and 4 Armadillo repeats; expressed exclusively during gametogenesis, at a late stage (PMID: 15459796)
chr7	2419195	2426633	2420146	2426262	-	CNK8	Cre07.g328850.t1.2		2426202,2425915,2425517,2425148,2424889,2424512,2424007,2423592,2423033,2422579,2421974,2421718,2421358,2421006,2420636,2419195	2426633,2426058,2425602,2425286,2424974,2424644,2424153,2423675,2423179,2422756,2422152,2421775,2421556,2421168,2420734,2420326	contains a NIMA kinase domain and a C-terminal region with no database similarity except in Volvox
chr7	2426734	2431805	2427309	2430913	+	CDPK9	Cre07.g328900.t1.2		2426734,2427275,2427794,2428373,2428690,2429316,2429836,2430210,2430524,2430846	2426930,2427585,2427980,2428523,2428798,2429586,2429939,2430332,2430690,2431805	Found in the flagellar proteome
chr7	2431830	2438243	2432964	2438056	-	Cre07.g328950.t1.1	Cre07.g328950.t1.1		2437997,2437630,2437133,2436910,2436478,2436029,2435633,2435454,2434726,2433660,2431830	2438243,2437723,2437248,2436976,2436660,2436178,2435766,2435501,2435247,2434538,2433499	
chr7	2438344	2442285	2438519	2440780	+	CPLD47	Cre07.g329000.t1.2		2438344,2438834,2439904,2440260,2440741	2438561,2439043,2439951,2440364,2442285	
chr7	2442288	2448123	2442306	2447865	-	AOC5	Cre07.g329050.t1.2		2447853,2447634,2446998,2446735,2446443,2446183,2445896,2445516,2445212,2444859,2444612,2444336,2444145,2443970,2443757,2443369,2442951,2442477,2442288	2448123,2447708,2447067,2446808,2446513,2446224,2445975,2445643,2445306,2444993,2444674,2444457,2444198,2444042,2443809,2443588,2443035,2442670,2442379	Related to human SLC7A family of solute carriers, involved in cationic amino acid transport (arginine, lysine, ornithine); this is probably the gene mutated in the L-canavanine resistant mutant can1, which is closely linked to pf17 on Chromosome_07; siRNA silencing of this gene leads to canavanin resistance (PMID:
chr7	2449963	2454143	2451926	2453497	-	Cre07.g329100.t1.2	Cre07.g329100.t1.2		2452810,2449963	2454143,2452679	
chr7	2454264	2467355	2454777	2466790	+	Cre07.g329150.t1.2	Cre07.g329150.t1.2		2454264,2455054,2457000,2457633,2457991,2458584,2459180,2459562,2460114,2460517,2460873,2461247,2461615,2461932,2464639,2465088,2465615,2466082,2466586	2454866,2455444,2457109,2457714,2458113,2458646,2459263,2459783,2460199,2460604,2460944,2461327,2461682,2461992,2464746,2465225,2465667,2466283,2467355	DEAH-box ATPase, putative RNA helicase, homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle; gene appears split, possibly a pseudogene
chr7	2454574	2467355	2454777	2466790	+	Cre07.g329150.t2.1	Cre07.g329150.t2.1		2454574,2455054,2457000,2457633,2457991,2458584,2459180,2459562,2460114,2460517,2460873,2461247,2461615,2461932,2464639,2465088,2465615,2466082,2466586	2454866,2455444,2457109,2457714,2458113,2458646,2459263,2459783,2460199,2460604,2460944,2461327,2461682,2461992,2464746,2465225,2465667,2466283,2467355	DEAH-box ATPase, putative RNA helicase, homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle; gene appears split, possibly a pseudogene
chr7	2467404	2468615	2467729	2468146	+	Cre07.g329200.t1.2	Cre07.g329200.t1.2		2467404,2467942	2467756,2468615	DEAH-box ATPase, putative RNA helicase, homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle; gene appears split, possibly a pseudogene
chr7	2468704	2469905	2469085	2469502	+	Cre07.g329217.t1.1	Cre07.g329217.t1.1		2468704,2469298	2469112,2469905	
chr7	2470064	2471845	2470441	2470858	+	Cre07.g329233.t1.1	Cre07.g329233.t1.1		2470064,2470654	2470468,2471845	
chr7	2471874	2475703	2472414	2475687	-	Cre07.g329250.t1.1	Cre07.g329250.t1.1		2473251,2471874	2475703,2473020	
chr7	2475750	2478843	2475884	2478348	-	Cre07.g329277.t1.2	Cre07.g329277.t1.2		2478554,2477652,2475750	2478843,2478410,2477378	
chr7	2479009	2486075	2479354	2485064	+	MSC1	Cre07.g329300.t1.2		2479009,2479872,2480227,2480821,2481226,2481560,2482082,2482394,2482781,2483086,2483294,2483599,2484142,2484335,2484658,2485001	2479531,2479973,2480298,2480907,2481337,2481627,2482218,2482463,2482881,2483146,2483391,2483722,2484195,2484403,2484741,2486075	mechanosensitive ion channel; sequence similarity with bacterial (E. coli) mechanosensitive ion channel MscS
chr7	2486098	2489673	2486516	2489609	-	Cre07.g329350.t1.2	Cre07.g329350.t1.2		2489588,2489319,2489013,2488604,2488208,2487883,2487633,2487413,2487201,2486950,2486098	2489673,2489422,2489199,2488744,2488435,2488008,2487749,2487444,2487255,2487036,2486789	
chr7	2489774	2492030	2489993	2491826	+	Cre07.g329400.t1.1	Cre07.g329400.t1.1		2489774,2490354,2490612,2490825,2491050,2491292	2490173,2490459,2490719,2490859,2491148,2492030	null-allele mutant was isolated (PMID 29743196)
chr7	2492058	2494103	2492270	2494052	-	Cre07.g329450.t1.2	Cre07.g329450.t1.2		2493871,2493660,2493236,2492860,2492599,2492058	2494103,2493751,2493497,2492914,2492712,2492364	
chr7	2492058	2493163	2492270	2493098	-	Cre07.g329450.t2.1	Cre07.g329450.t2.1		2493058,2492860,2492599,2492058	2493163,2492914,2492712,2492364	
chr7	2493634	2494565	2493699	2494232	+	Cre07.g329476.t1.1	Cre07.g329476.t1.1		2493634,2493938,2494232	2493796,2494098,2494565	
chr7	2494614	2500536	2494932	2500079	+	SUB1	Cre07.g329500.t2.1		2494614,2494911,2495170,2495582,2495884,2496296,2496498,2496804,2497287,2497593,2497892,2498261,2498539,2498772,2498999,2499194,2499434,2499650	2494769,2495073,2495439,2495673,2496086,2496346,2496646,2497094,2497471,2497787,2498130,2498383,2498653,2498880,2499060,2499297,2499513,2500536	secreted protein, contains two Kazal-type serine protease inhibitor domains (IPR002350) and a protease S8 (subtilase) domain that it probably regulates; the latter is most related to bacterial extracellular proteases
chr7	2494244	2500536	2494932	2500079	+	SUB1	Cre07.g329500.t1.2		2494244,2494741,2494911,2495170,2495582,2495884,2496296,2496498,2496804,2497287,2497593,2497892,2498261,2498539,2498772,2498999,2499194,2499434,2499650	2494425,2494769,2495073,2495439,2495673,2496086,2496346,2496646,2497094,2497471,2497787,2498130,2498383,2498653,2498880,2499060,2499297,2499513,2500536	secreted protein, contains two Kazal-type serine protease inhibitor domains (IPR002350) and a protease S8 (subtilase) domain that it probably regulates; the latter is most related to bacterial extracellular proteases
chr7	2500538	2511683	2500827	2511375	-	VFL5	Cre07.g329550.t1.1		2511305,2511131,2509693,2509489,2509012,2508877,2508009,2507679,2505111,2501063,2500538	2511683,2511221,2511040,2509563,2509309,2508916,2508780,2507894,2507596,2505010,2500870	Protein with conserved tubulin site.  Probe for VFL5 marker maps to the 3' end of this gene.
chr7	2511788	2517213	2512033	2517019	-	Cre07.g329600.t1.1	Cre07.g329600.t1.1		2515869,2515647,2514955,2514640,2513412,2513129,2512905,2512649,2512334,2511788	2517213,2515722,2515405,2514752,2514523,2513232,2512952,2512726,2512432,2512114	
chr7	2511788	2517213	2512033	2517019	-	Cre07.g329600.t2.1	Cre07.g329600.t2.1		2515869,2515647,2514955,2514640,2513412,2513129,2512905,2512649,2512334,2511788	2517213,2515722,2515405,2514752,2514523,2513229,2512952,2512726,2512432,2512114	
chr7	2521401	2523973	2522238	2523816	-	Cre07.g329650.t1.2	Cre07.g329650.t1.2		2523769,2523477,2523203,2522941,2522737,2521401	2523973,2523567,2523327,2523013,2522826,2522457	
chr7	2524091	2529393	2524614	2529197	-	RPT2	Cre07.g329700.t1.2		2529137,2528799,2528520,2528084,2527794,2527287,2526676,2526138,2525339,2524913,2524091	2529393,2529041,2528581,2528192,2527853,2527421,2526868,2526262,2525521,2524999,2524689	26S proteasome regulatory complex, base subcomplex, ATPase RPT2 (subunit 4)
chr7	2531297	2537093	2532563	2536892	-	Cre07.g329750.t1.2	Cre07.g329750.t1.2		2536849,2536575,2536300,2535938,2535521,2531297	2537093,2536675,2536403,2536112,2535804,2535375	
chr7	2537244	2539110	2537504	2538571	+	Cre07.g329767.t1.1	Cre07.g329767.t1.1		2537244,2537761,2538128,2538321	2537513,2537870,2538163,2539110	
chr7	2539344	2540757	2539584	2540097	+	Cre07.g329783.t1.1	Cre07.g329783.t1.1		2539344,2539972	2539663,2540757	
chr7	2542428	2544322	2543525	2544068	-	HSFL	Cre07.g329800.t1.2		2543961,2542428	2544322,2543643	
chr7	2544423	2550304	2544552	2549305	+	KCN5	Cre07.g329850.t1.1		2544423,2544986,2545326,2545573,2545927,2546136,2546473,2546930,2547215,2548159	2544794,2545058,2545427,2545698,2546005,2546227,2546645,2547005,2547910,2550304	Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity, cyclic nucleotide binding domain at C-terminus
chr7	2550363	2562604	2550816	2562327	+	Cre07.g329861.t1.2	Cre07.g329861.t1.2		2550363,2550608,2550802,2550955,2552574,2552908,2553162,2554898,2556530,2557520,2558828,2559066,2559392,2561434	2550496,2550674,2550827,2552413,2552684,2552964,2554771,2556416,2557391,2558667,2558989,2559179,2561207,2562604	
chr7	2562653	2572084	2562909	2570684	+	VGK1	Cre07.g329882.t1.1		2562653,2563154,2563412,2564413,2565293,2565525,2566098,2566522,2566819,2567154,2567580,2567972,2568241,2568586,2568842,2569194,2569434,2569678,2570026,2570569	2563025,2563227,2564166,2565110,2565370,2565859,2566267,2566607,2566972,2567279,2567706,2568069,2568363,2568664,2569021,2569261,2569529,2569864,2570425,2572084	Similar to gated outwardly-rectifying K+ channels; upstream of Histidine kinase rhodopsin 4 (COP8) and possibly functionally associated
chr7	2572303	2585347	2573001	2583976	+	COP8	Cre07.g329900.t1.1		2572303,2572964,2573535,2573708,2573993,2574239,2574615,2574842,2575291,2575622,2576233,2576517,2576886,2577352,2577702,2578049,2578471,2579138,2579621,2579899,2580251,2580511,2581010,2581458,2581932,2582172,2582475,2582869,2583721	2572834,2573004,2573572,2573842,2574083,2574323,2574654,2574938,2575422,2575711,2576312,2576676,2577014,2577513,2577806,2578128,2578848,2579342,2579719,2579967,2580349,2580698,2581236,2581603,2582030,2582311,2582691,2583402,2585347	Histidine kinase rhodopsin 4; contains bacteriorhodopsin, Histine kinase, response regulator receiver, Guanylate/adenylate cyclase catalytic and SAM domains
chr7	2588604	2591642	2589060	2591414	-	Cre07.g329950.t1.1	Cre07.g329950.t1.1		2591395,2591107,2590858,2590183,2589938,2589617,2589408,2588604	2591642,2591127,2590955,2590305,2590030,2589783,2589504,2589291	null-allele passenger mutation was isolated (PMID 29743196)
chr7	2591743	2592863	2592239	2592492	+	Cre07.g330000.t1.1	Cre07.g330000.t1.1		2591743,2592237	2591881,2592863	
chr7	2592933	2596750	2593185	2596423	+	Cre07.g330050.t1.1	Cre07.g330050.t1.1		2592933,2593358,2593601,2593818,2594719,2595065,2595601	2593251,2593447,2593653,2594351,2594876,2595468,2596750	
chr7	2596757	2605552	2597245	2605380	-	GTR25	Cre07.g330100.t1.2		2605236,2603943,2603645,2603213,2602924,2602496,2602128,2601793,2601407,2600973,2600548,2600149,2599778,2599440,2599164,2598702,2596757	2605552,2604046,2603738,2603375,2603002,2602642,2602194,2601867,2601558,2601187,2600740,2600361,2599911,2599539,2599254,2598878,2597311	part of the oligosaccharyl transferase (OTase) complex (a glycosyl transferase)
chr7	2605673	2610007	2605781	2609803	+	Cre07.g330150.t1.1	Cre07.g330150.t1.1		2605673,2606164,2606501,2606905,2607131,2607278,2607660,2608891,2609186,2609467,2609752	2606029,2606290,2606732,2606975,2607193,2607535,2608721,2609036,2609266,2609623,2610007	
chr7	2610073	2613002	2610509	2612247	-	RSP9	Cre07.g330200.t1.2		2612166,2612005,2611412,2610871,2610073	2613002,2612097,2611744,2611002,2610680	A subunit in the flagellar radial spoke head; gene originally termed PF17 [PMID: 7204490, PMID: 16507594; GI:83284713]
chr7	2613753	2615562	2613993	2615156	+	PSAH	Cre07.g330250.t1.2		2613753,2614163,2614558,2615031	2614064,2614217,2614699,2615562	Chloroplast precursor
chr7	2616983	2617775	2617242	2617722	+	Cre07.g330276.t1.1	Cre07.g330276.t1.1		2616983,2617628	2617355,2617775	
chr7	2617777	2620722	2618574	2620015	-	Cre07.g330300.t1.2	Cre07.g330300.t1.2		2619772,2617777	2620722,2619696	
chr7	2620837	2628642	2621274	2628205	-	OPR115	Cre07.g330350.t1.1		2628408,2626675,2625933,2625612,2625142,2624953,2624366,2623662,2623361,2622962,2622575,2622325,2621991,2621731,2620837	2628642,2628218,2626478,2625761,2625477,2625024,2624761,2624195,2623531,2623086,2622834,2622421,2622114,2621802,2621571	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr7	2628793	2636557	2629116	2636027	+	KCN1	Cre07.g330400.t1.1		2628793,2629270,2629909,2630326,2630513,2630777,2631004,2631297,2631584,2631800,2631995,2632256,2632532,2632808,2633227,2633484,2633790,2634418,2634660,2635079	2629125,2629330,2630213,2630392,2630648,2630858,2631152,2631411,2631648,2631851,2632067,2632364,2632626,2632989,2633313,2633669,2634278,2634467,2634822,2636557	Belongs to Kv class; contains one K+ selective pore domain; sequence shows the K+ filter selection and voltage sensor regions; closely related to KCN2
chr7	2636863	2638954	2636970	2638390	+	MRPL24	Cre07.g330450.t1.2		2636863,2637229,2637426,2637623,2637878	2637147,2637288,2637518,2637710,2638954	
chr7	2639359	2644272	2640993	2644072	-	Cre07.g330500.t1.2	Cre07.g330500.t1.2		2643887,2642672,2642151,2641841,2641677,2641392,2639359	2644272,2643455,2642365,2641983,2641708,2641526,2641122	
chr7	2644383	2649854	2644986	2649146	+	Cre07.g330550.t1.2	Cre07.g330550.t1.2		2644383,2644924,2645347,2645574,2645984,2646295,2646994,2647381,2647649,2647999,2648501,2648945	2644640,2645065,2645450,2645717,2646073,2646753,2647237,2647448,2647743,2648266,2648755,2649854	
chr7	2649857	2655542	2649884	2655451	-	Cre07.g330600.t1.1	Cre07.g330600.t1.1		2655358,2654693,2653983,2653645,2653316,2652973,2652587,2652118,2651705,2651417,2651113,2649857	2655542,2655229,2654462,2653758,2653376,2653022,2652666,2652376,2651813,2651484,2651187,2650844	
chr7	2655673	2659054	2655986	2658549	+	Cre07.g330650.t1.2	Cre07.g330650.t1.2		2655673,2656489,2656742,2657996,2658366	2656210,2656615,2656784,2658108,2659054	
chr7	2659057	2664861	2659504	2664656	-	FAP91	Cre07.g330700.t1.2		2664619,2664394,2663596,2663085,2662621,2661802,2659057	2664861,2664529,2664067,2663279,2662929,2662423,2661630	Flagellar Associated Protein similar to sperm protein kinase associated protein AAT1. Found in the flagellar proteome, upregulated by deflagellation [PMID: 15998802]; identified in the flagellar and basal body proteome as FBB8 [PMID: 15137946]; Associated with the CaM- and spoke-Associated CSC complex at the base of the radial spoke
chr7	2665869	2670182	2666490	2669812	-	PHC43	Cre07.g330750.t1.1		2670038,2669475,2668717,2668439,2665869	2670182,2669886,2669305,2668581,2668274	
chr7	2671983	2677514	2672137	2677394	+	OPR30	Cre07.g330800.t1.2		2671983,2673135,2674152,2674494,2674920,2675573	2672940,2673837,2674240,2674782,2675384,2677514	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 35 codons at 5'-end: MLVHRTAPATSHTKQSECYNSITPCICKHHAWPLS
chr7	2677517	2682632	2678219	2682341	-	Cre07.g330850.t1.1	Cre07.g330850.t1.1		2682243,2682064,2681853,2681358,2680740,2680173,2679838,2679195,2677517	2682632,2682149,2681978,2681502,2680915,2680381,2679901,2679300,2678871	
chr7	2682838	2688032	2683423	2687970	-	Cre07.g330900.t1.2	Cre07.g330900.t1.2		2685285,2684995,2682838	2688032,2685081,2684854	
chr7	2688107	2691042	2688723	2690746	-	AP4S4	Cre07.g330950.t1.2		2690605,2690152,2689644,2689051,2688107	2691042,2690238,2689709,2689086,2688828	Expressed Protein. Sigma4-Adaptin. Clathrin Adaptor Complex Small Subunit, putative member of AP-4 complex
chr7	2691143	2694698	2691341	2694197	+	Cre07.g331000.t1.1	Cre07.g331000.t1.1		2691143,2691518,2691833,2692208,2692530,2692835,2693310,2693733,2694115	2691397,2691615,2691990,2692347,2692611,2693081,2693423,2693889,2694698	
chr7	2694913	2704914	2696098	2703222	+	Cre07.g331050.t1.1	Cre07.g331050.t1.1		2694913,2696032,2696782,2698567,2698945,2699262,2700060,2700678	2695624,2696575,2698308,2698701,2699088,2699833,2700531,2704914	
chr7	2694913	2704914	2696098	2703222	+	Cre07.g331050.t2.1	Cre07.g331050.t2.1		2694913,2696029,2696782,2698567,2698945,2699262,2700060,2700678	2695624,2696575,2698308,2698701,2699088,2699833,2700531,2704914	
chr7	2705537	2711312	2706692	2711044	-	PHC11	Cre07.g331100.t1.2		2711031,2710312,2709945,2709728,2709253,2708948,2708688,2708174,2707474,2705537	2711312,2710751,2710107,2709783,2709417,2709110,2708785,2708347,2707886,2707371	pherophorin-C11 (PHC11) [PMID: 16367971]; partial sequence very similar to extracellular matrix protein (cell wall protein) pherophorin-C1 [Genbank entry DQ196107], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain; short pherophorin fragment, pseudogene?
chr7	2711793	2713424	2711966	2713153	+	Cre07.g331114.t1.2	Cre07.g331114.t1.2		2711793,2712234,2712609,2712944	2712108,2712361,2712765,2713424	
chr7	2711793	2715755	2711966	2714053	+	Cre07.g331114.t2.1	Cre07.g331114.t2.1		2711793,2712234,2712609,2712944,2713482,2713665,2714008	2712108,2712361,2712765,2712991,2713543,2713697,2715755	
chr7	2711793	2715755	2711966	2714013	+	Cre07.g331114.t3.1	Cre07.g331114.t3.1		2711793,2712234,2712609,2712944,2714008	2712108,2712361,2712765,2712991,2715755	
chr7	2716643	2727658	2718023	2727166	-	Cre07.g331150.t1.2	Cre07.g331150.t1.2		2727543,2727090,2726292,2726095,2725793,2725426,2724790,2724413,2723992,2723549,2722996,2722686,2722249,2721850,2721364,2721036,2720504,2720281,2720042,2719339,2718983,2718771,2718318,2716643	2727658,2727410,2726426,2726226,2725877,2725543,2724965,2724500,2724228,2723773,2723220,2722790,2722398,2721994,2721585,2721237,2720802,2720417,2720173,2719916,2719148,2718852,2718612,2718147	
chr7	2727713	2732228	2728407	2731971	-	Cre07.g331200.t1.1	Cre07.g331200.t1.1		2731806,2731313,2730076,2729346,2727713	2732228,2731615,2731080,2729838,2729027	
chr7	2732409	2745463	2732666	2744572	+	Cre07.g331250.t1.1	Cre07.g331250.t1.1		2732409,2733884,2734285,2734631,2735133,2736507,2736833,2737675,2738185,2738745,2739098,2739710,2739941,2740310,2740688,2741445,2741774,2742195,2742878,2743197,2743827,2744518	2733524,2733978,2734363,2734669,2735150,2736608,2737114,2737805,2738284,2738849,2739226,2739776,2740152,2740384,2740838,2741542,2741878,2742392,2742943,2743277,2744189,2745463	
chr7	2745519	2755925	2745615	2754916	+	AGP3	Cre07.g331300.t1.2		2745519,2746419,2746908,2747200,2747618,2748010,2748383,2748900,2749144,2749676,2750126,2750776,2752459,2752985,2753482,2753779,2754444,2754812	2745964,2746548,2746997,2747263,2747722,2748090,2748451,2748965,2749233,2749786,2750212,2750844,2752545,2753117,2753546,2754127,2754554,2755925	ADP-glucose pyrophosphorylase large subunit 3; Glucose-1-phosphate adenylyltransferase / ADP-glucose synthase; regulatory subunit catalyzes the formation of the glucosyl nucleotide from ATP and glucose-1-phosphate; contains nucleotidyl transferase domain; involved in starch metabolism
chr7	2756192	2761048	2756672	2760580	-	Cre07.g331350.t1.1	Cre07.g331350.t1.1		2760502,2760176,2756192	2761048,2760267,2760042	
chr7	2761136	2773798	2763065	2773471	-	Cre07.g331401.t1.1	Cre07.g331401.t1.1		2773447,2773283,2772700,2769190,2768685,2768102,2767765,2761136	2773798,2773319,2772955,2772445,2768721,2768357,2767847,2767594	
chr7	2773851	2780898	2774423	2780802	-	Cre07.g331450.t1.1	Cre07.g331450.t1.1		2780766,2780246,2779669,2779232,2773851	2780898,2780396,2780006,2779350,2779137	Related to GCN5
chr7	2780973	2785228	2781632	2785111	-	Cre07.g331475.t1.1	Cre07.g331475.t1.1		2784643,2784226,2783706,2782774,2780973	2785228,2784348,2783875,2783502,2782329	
chr7	2785349	2791273	2785484	2790657	+	CLPR3	Cre07.g331500.t1.1		2785349,2785773,2786055,2786287,2787071,2787757,2788120,2788506,2788832,2789295,2789681,2790184,2790645	2785685,2785895,2786114,2786383,2787219,2787846,2788206,2788550,2788900,2789348,2789779,2790345,2791273	
chr7	2791511	2794528	2792315	2794454	-	PST1	Cre07.g331550.t1.2		2793362,2792838,2791511	2794528,2792936,2792342	phosphoserine aminotransferase (EC 2.6.1.52); phosphoserine transaminase; Target-P predicts mitochondrial targeting; plastid targeting predicted by homology
chr7	2795153	2797824	2795605	2797544	-	Cre07.g331600.t1.2	Cre07.g331600.t1.2		2797393,2797107,2796718,2796131,2795153	2797824,2797163,2796881,2796535,2795875	
chr7	2800289	2805018	2800890	2803694	+	Cre07.g331650.t1.2	Cre07.g331650.t1.2		2800289,2800850,2801054,2801266	2800541,2800914,2801154,2805018	
chr7	2806039	2812773	2806513	2810801	+	Cre07.g331700.t1.1	Cre07.g331700.t1.1		2806039,2806467,2807066	2806306,2806537,2812773	
chr7	2812949	2815450	2813118	2813994	+	Cre07.g331750.t1.2	Cre07.g331750.t1.2		2812949,2813396,2813842	2813285,2813457,2815450	
chr7	2815453	2818058	2815496	2817770	-	CGL79	Cre07.g331800.t1.2		2817582,2816936,2816496,2815453	2818058,2817275,2816609,2816126	Conserved in the Green Lineage
chr7	2818199	2822402	2818321	2821771	+	Cre07.g331850.t1.1	Cre07.g331850.t1.1		2818199,2818917,2819384,2819841,2820631,2821268,2821574	2818500,2819151,2819513,2820133,2820905,2821356,2822402	
chr7	2822526	2824638	2822737	2824574	-	RPS13	Cre07.g331900.t1.2		2824546,2824429,2823990,2823791,2822526	2824638,2824471,2824204,2823855,2822842	Cytosolic 40S small ribosomal subunit protein S13
chr7	2824734	2826953	2825792	2826879	+	Cre07.g331962.t1.1	Cre07.g331962.t1.1		2824734,2825525	2825049,2826953	
chr7	2829689	2831775	2830483	2831301	+	Cre07.g332025.t1.2	Cre07.g332025.t1.2		2829689,2830789,2831091,2831301	2830579,2830877,2831158,2831775	
chr7	2834809	2838455	2835014	2837240	+	Cre07.g332050.t1.2	Cre07.g332050.t1.2		2834809,2835338,2835608,2836005,2836329,2836598,2837195	2835192,2835388,2835789,2836109,2836403,2836816,2838455	
chr7	2839169	2841950	2839449	2841341	+	Cre07.g332066.t1.2	Cre07.g332066.t1.2		2839169,2839809,2840146,2841153	2839530,2839860,2840301,2841950	
chr7	2839169	2841950	2839449	2840322	+	Cre07.g332066.t2.1	Cre07.g332066.t2.1		2839169,2839809,2840146	2839530,2839860,2841950	
chr7	2845629	2847320	2846286	2846509	+	Cre07.g332084.t1.1	Cre07.g332084.t1.1		2845629	2847320	
chr7	2847369	2855199	2847574	2854115	+	Cre07.g332100.t1.2	Cre07.g332100.t1.2		2847369,2847971,2848315,2848647,2848872,2849222,2849603,2849938,2850416,2850846,2851208,2851540,2851966,2852222,2852482,2853181,2853475,2853997	2847791,2848167,2848490,2848734,2849108,2849452,2849827,2850183,2850560,2851067,2851388,2851835,2852102,2852353,2853047,2853346,2853851,2855199	
chr7	2857979	2859755	2858147	2859103	+	Cre07.g332150.t1.2	Cre07.g332150.t1.2		2857979,2858275,2858437,2859020	2858205,2858336,2858557,2859755	
chr7	2859809	2862800	2860317	2862769	+	Cre07.g332250.t1.2	Cre07.g332250.t1.2		2859809,2861251,2862487	2860969,2862293,2862800	
chr7	2862849	2866231	2863158	2863471	+	Cre07.g332275.t1.1	Cre07.g332275.t1.1		2862849	2866231	
chr7	2867829	2881572	2867964	2880538	+	GWD2	Cre07.g332300.t1.2		2867829,2868201,2868540,2869035,2869387,2869729,2870306,2870707,2871095,2871887,2872370,2872814,2873385,2873790,2874224,2874607,2874921,2875276,2875591,2876182,2876686,2877281,2877782,2878235,2878614,2878919,2879377,2879887,2880433	2868068,2868238,2868708,2869089,2869488,2869791,2870434,2870797,2871234,2872033,2872473,2872970,2873458,2873880,2874271,2874702,2874987,2875388,2875758,2876390,2876953,2877551,2878010,2878304,2878674,2879023,2879512,2880007,2881572	R1 protein; phosphorylates the C-3 and C-6 positions of alpha glucans with the beta phosphate of ATP
chr7	2882098	2885129	2882488	2884454	+	Cre07.g332350.t1.1	Cre07.g332350.t1.1		2882098,2882746,2883436,2883694,2884262	2882500,2883386,2883502,2883948,2885129	
chr7	2885178	2887879	2885553	2887557	+	Cre07.g332400.t1.2	Cre07.g332400.t1.2		2885178,2885499,2887026	2885382,2886831,2887879	
chr7	2887902	2891207	2888391	2891114	-	Cre07.g332450.t1.2	Cre07.g332450.t1.2		2891099,2890903,2890701,2890427,2890051,2889821,2889623,2889391,2888984,2887902	2891207,2890995,2890754,2890549,2890248,2889856,2889685,2889440,2889158,2888658	
chr7	2891328	2897792	2891522	2897417	+	AXT2	Cre07.g332500.t1.2		2891328,2891927,2892268,2892589,2893074,2893424,2893743,2893972,2894323,2894714,2895101,2895424,2895781,2896043,2896339,2896902,2897363	2891736,2892059,2892370,2892737,2893233,2893511,2893813,2894085,2894477,2894816,2895209,2895568,2895880,2896174,2896418,2897199,2897792	GT77 family
chr7	2897796	2900537	2898225	2900495	-	PSL1	Cre07.g332550.t1.2		2899815,2899190,2898737,2897796	2900537,2899338,2898864,2898420	contains YD and GxGD motifs typical of typical of A22 family aspartic proteases, presenilins/signal peptide peptidases; belongs to SPP type, cleaving only type II transmembrane helices (C-terminus towards cytosol); probably involved in clearance of signal peptides and in signaling; contains no signal peptide; presence of a C-terminal KKxx motif, predicted to face the cytosol, explains retention in the ER
chr7	2900635	2917757	2900802	2917662	-	Cre07.g332600.t1.1	Cre07.g332600.t1.1		2917637,2917432,2916670,2915923,2913903,2912772,2912488,2911929,2910170,2908568,2908245,2907980,2907282,2906815,2906496,2906313,2906012,2905772,2902321,2900635	2917757,2917478,2916924,2916480,2915783,2913746,2912568,2912330,2911786,2909980,2908328,2908042,2907725,2907113,2906615,2906361,2906116,2905876,2905659,2902110	
chr7	2917878	2924101	2918149	2923511	+	NCT1	Cre07.g332650.t1.1		2917878,2918291,2918702,2919138,2919609,2919837,2920103,2920730,2921341,2921768,2922209,2922571,2922890,2923332	2918206,2918407,2918779,2919205,2919695,2919870,2920261,2921001,2921398,2921835,2922449,2922708,2923043,2924101	major facilitator superfamily
chr7	2924112	2928017	2924325	2927704	-	Cre07.g332700.t1.1	Cre07.g332700.t1.1		2927093,2926176,2925889,2925534,2925025,2924112	2928017,2926944,2926038,2925707,2925117,2924532	
chr7	2928476	2938587	2929199	2938490	-	Cre07.g332750.t1.1	Cre07.g332750.t1.1		2938282,2937842,2937507,2937100,2936781,2936442,2936204,2935826,2934897,2934573,2934256,2933811,2933288,2932996,2932640,2932162,2931116,2930792,2929420,2928476	2938587,2938134,2937621,2937253,2936913,2936557,2936312,2935999,2935538,2934668,2934339,2933927,2933635,2933064,2932791,2932377,2931806,2930866,2930586,2929244	Previously annotated as part of Signal peptide peptidase PSL2
chr7	2938688	2942437	2938939	2942373	-	PSL2	Cre07.g332786.t1.2		2942117,2941790,2941402,2941206,2940843,2940533,2940239,2939870,2938688	2942437,2941912,2941592,2941280,2940989,2940634,2940361,2940022,2939605	contains YD and GxGD motifs typical of typical of A22 family aspartic proteases, presenilins/signal peptide peptidases; belongs to SPP type, cleaving only type II transmembrane helices (C-terminus towards cytosol); probably involved in clearance of signal peptides and in signaling; contains a signal peptide and a lumenal N-terminal domain; presence of a C-terminal KKxx motif, predicted to face the cytosol, explains retention in the ER
chr7	2942538	2949129	2942726	2949083	+	Cre07.g332800.t1.2	Cre07.g332800.t1.2		2942538,2943274,2943603,2945420,2946600,2947547,2948113	2943116,2943435,2944927,2946201,2947172,2947736,2949129	
chr7	2949135	2951242	2949897	2950861	-	SELM	Cre07.g332851.t1.1		2951062,2950937,2950850,2950730,2950432,2950106,2949135	2951242,2951001,2950898,2950781,2950516,2950284,2949897	model is wrong due to UGA Sec codon; see EDP05676.1 for correct sequence; contains a Selenocysteine in position 33; contains 1 thioredoxin domain and may function as a thiol-disulfide oxidoreductase participating in disulfide bond formation; human homologue is located in cytoplasm (perinuclear region); note that SELM1 paralog AAN32905 identified in PMID:12110581 was actually from Chlamydomonas sp. HS-5
chr7	2952338	2961707	2953175	2961477	-	Cre07.g332901.t1.1	Cre07.g332901.t1.1		2961446,2961166,2960632,2959343,2958994,2958622,2958324,2957915,2957646,2957433,2957106,2956863,2956467,2956275,2955914,2955634,2955326,2954734,2954419,2953692,2952338	2961707,2961206,2960739,2960293,2959125,2958802,2958451,2958049,2957732,2957500,2957311,2956987,2956577,2956350,2956133,2955720,2955456,2955087,2954584,2954285,2953530	
chr7	2961757	2965817	2962735	2965143	-	SFA1	Cre07.g332950.t1.2		2965139,2964981,2964818,2964644,2964307,2963935,2963669,2963389,2962984,2961757	2965817,2965067,2964891,2964718,2964479,2964026,2963768,2963467,2963073,2962792	SF-assemblin has been identified as the filament-forming component of the striated microtubule-associated fibers (distal striated fiber) connecting the basal bodies. GI:15528533, PMID: 11896198
chr7	2965948	2973371	2966287	2971111	+	CEP4	Cre07.g333000.t1.1		2965948,2966528,2966798,2967032,2967309,2967571,2968097,2968379,2968724,2969042,2969237,2969558,2969789,2970090,2970479,2970940	2966397,2966615,2966878,2967130,2967403,2967950,2968206,2968534,2968846,2969062,2969314,2969625,2969860,2970211,2970609,2973371	Cysteine endopeptidases (EC 3.4.22), C1A family (papain-type); most similar to counting factor associated peptidase of Dictyostelium discoideum and to insect proteinases possibly involved in defense mechanisms (PMID: 10050046); contains N-terminal cathepsin propeptide inhibitor domain (I29) domain
chr7	2965948	2973371	2966161	2971111	+	CEP4	Cre07.g333000.t2.1		2965948,2966528,2966798,2967032,2967309,2967571,2968097,2968379,2968724,2969042,2969237,2969558,2969789,2970090,2970479,2970940	2966253,2966615,2966878,2967130,2967403,2967950,2968206,2968534,2968846,2969062,2969314,2969625,2969860,2970211,2970609,2973371	Cysteine endopeptidases (EC 3.4.22), C1A family (papain-type); most similar to counting factor associated peptidase of Dictyostelium discoideum and to insect proteinases possibly involved in defense mechanisms (PMID: 10050046); contains N-terminal cathepsin propeptide inhibitor domain (I29) domain
chr7	2973678	2976303	2973923	2975767	+	Cre07.g333050.t1.2	Cre07.g333050.t1.2		2973678,2974101,2974446,2974648,2974936,2975198,2975456	2973982,2974217,2974524,2974727,2975024,2975305,2976303	
chr7	2976418	2979639	2976742	2979417	+	Cre07.g333100.t1.1	Cre07.g333100.t1.1		2976418,2976945,2977112,2977603,2977777,2978057,2978357,2978631,2978818,2979157	2976812,2976980,2977168,2977642,2977858,2978154,2978445,2978683,2978878,2979639	
chr7	2976418	2979829	2976742	2979417	+	Cre07.g333100.t2.1	Cre07.g333100.t2.1		2976418,2976945,2977112,2977603,2977777,2978057,2978357,2978631,2978818,2979157	2976812,2976980,2977168,2977642,2977858,2978154,2978445,2978683,2978878,2979829	
chr7	2979854	2982077	2980161	2982033	-	Cre07.g333150.t1.2	Cre07.g333150.t1.2		2981955,2981684,2981109,2980885,2980592,2979854	2982077,2981753,2981455,2980962,2980669,2980269	
chr7	3012275	3014117	3012908	3014092	+	Cre07.g333252.t1.1	Cre07.g333252.t1.1		3012275,3012599,3012904,3013362,3013872	3012289,3012659,3013008,3013497,3014117	
chr7	3014130	3015095	3014162	3014642	-	Cre07.g333350.t1.2	Cre07.g333350.t1.2		3014473,3014130	3015095,3014278	
chr7	3015216	3024274	3015421	3023784	+	MMP23	Cre07.g333400.t1.1		3015216,3015995,3016462,3016808,3017381,3017745,3017989,3018322,3019950,3020203,3020608,3020857,3021195,3021398,3021627,3021937,3022264,3022745,3023072,3023333,3023618	3015488,3016130,3016564,3017144,3017517,3017819,3018148,3018410,3020018,3020305,3020711,3021002,3021254,3021433,3021762,3022062,3022370,3022915,3023153,3023403,3024274	Matrix metalloproteinase belonging to the M11 peptidase family
chr7	3024326	3029351	3024335	3028584	+	Cre07.g333450.t1.2	Cre07.g333450.t1.2		3024326,3024955,3025418,3025637,3025925,3026166,3026482,3026813,3027037,3027499,3028097,3028390	3024794,3025142,3025462,3025757,3026032,3026300,3026572,3026888,3027209,3027880,3028224,3029351	a glycosyl transferase
chr7	3029766	3032372	3030104	3031182	+	Cre07.g333500.t1.2	Cre07.g333500.t1.2		3029766,3030433,3030844,3031095	3030185,3030635,3030907,3032372	
chr7	3032536	3050487	3033155	3049365	+	Cre07.g333535.t1.1	Cre07.g333535.t1.1		3032536,3033000,3033440,3033666,3033827,3034301,3034830,3035163,3035523,3035997,3036399,3037013,3038120,3038450,3038762,3039178,3039877,3040186,3040508,3043350,3043641,3043911,3044314,3044519,3045345,3045611,3046031,3046402,3046742,3047008,3047984,3048252,3048539,3048896	3032894,3033215,3033481,3033707,3034028,3034714,3034976,3035275,3035764,3036133,3036514,3037162,3038303,3038589,3039001,3039777,3040050,3040347,3043256,3043474,3043799,3044149,3044425,3044689,3045464,3045844,3046162,3046522,3046866,3047109,3048099,3048330,3048732,3050487	
chr7	3060616	3062457	3060690	3062141	+	Cre07.g333570.t1.1	Cre07.g333570.t1.1		3060616,3061532	3061431,3062457	
chr7	3064116	3067595	3064952	3067565	-	Cre07.g333605.t1.1	Cre07.g333605.t1.1		3067274,3066250,3064116	3067595,3066970,3064952	
chr7	3079090	3086155	3080603	3085658	-	Cre07.g333640.t1.1	Cre07.g333640.t1.1		3085651,3082426,3079090	3086155,3085461,3082252	
chr7	3100600	3101875	3100699	3101378	-	Cre07.g333675.t1.1	Cre07.g333675.t1.1		3101371,3100600	3101875,3101181	
chr7	3153885	3157535	3156595	3157213	-	Cre07.g333711.t1.1	Cre07.g333711.t1.1		3157157,3156740,3153885	3157535,3156830,3156619	
chr7	3182554	3186715	3183241	3186646	+	Cre07.g333746.t1.1	Cre07.g333746.t1.1		3182554,3184725	3184461,3186715	
chr7	3190474	3193885	3190543	3190970	+	Cre07.g333781.t1.1	Cre07.g333781.t1.1		3190474,3190896	3190682,3193885	
chr7	3194318	3198923	3195284	3198890	-	Cre07.g333816.t1.1	Cre07.g333816.t1.1		3198562,3195898,3194318	3198923,3198113,3195284	
chr7	3210448	3215323	3210860	3214719	-	Cre07.g333850.t1.1	Cre07.g333850.t1.1		3214968,3214611,3214344,3213937,3213688,3212906,3212405,3210448	3215323,3214790,3214403,3214000,3213793,3213080,3212559,3212241	
chr7	3210448	3215323	3210860	3214719	-	Cre07.g333850.t2.1	Cre07.g333850.t2.1		3214968,3214611,3214344,3213937,3213688,3212906,3212405,3210448	3215323,3214754,3214403,3214000,3213793,3213080,3212559,3212241	
chr7	3217064	3218473	3217488	3218297	-	NUOA8	Cre07.g333900.t1.1		3218121,3217883,3217064	3218473,3217951,3217564	NADH:ubiquinone oxidoreductase (Complex I) 12.5 kDa subunit precursor, mitochondrial. [=NDUFA8, PGIV subunit]. gi 33943531 gb AAQ55460.1  [PMID: 15710684; PMID: 15450959]
chr7	3219054	3224787	3219308	3224457	+	VPS45	Cre07.g333950.t1.2		3219054,3219630,3220032,3220380,3220997,3221269,3221462,3221677,3221909,3222243,3222484,3222791,3223094,3223453,3223910,3224135,3224346	3219506,3219717,3220123,3220520,3221110,3221367,3221533,3221760,3222034,3222323,3222588,3222888,3223220,3223614,3224000,3224226,3224787	Expressed Protein. SM (Sec1-family) protein, binds to SNAREs in the Golgi and Endosomal system
chr7	3229568	3230923	3230108	3230772	-	Cre07.g334025.t1.1	Cre07.g334025.t1.1		3230661,3230391,3229568	3230923,3230459,3230192	
chr7	3231034	3240791	3231207	3240441	+	GNOM	Cre07.g334100.t1.1		3231034,3231393,3231545,3231812,3232110,3232361,3232588,3232815,3233085,3233249,3233566,3233790,3234021,3234339,3234809,3235003,3235346,3235695,3235913,3236197,3236484,3236880,3237194,3237469,3237713,3237930,3238225,3238563,3238890,3239156,3239445,3239992,3240327	3231324,3231468,3231676,3231930,3232230,3232467,3232686,3232934,3233117,3233410,3233673,3233902,3234200,3234631,3234864,3235173,3235582,3235781,3236048,3236321,3236668,3236983,3237320,3237591,3237807,3238108,3238383,3238729,3239019,3239329,3239666,3240141,3240791	Involved in polarized secretion in plants
chr7	3240844	3247391	3241158	3245998	+	Cre07.g334150.t1.1	Cre07.g334150.t1.1		3240844,3241547,3242521,3242732,3245182	3241416,3241696,3242592,3245050,3247391	
chr7	3247504	3254163	3247950	3253811	-	HEL38	Cre07.g334200.t1.2		3253647,3253453,3253019,3252727,3252300,3251923,3251688,3251483,3251155,3250667,3250300,3250068,3249784,3249515,3249160,3248797,3248553,3248245,3247504	3254163,3253519,3253122,3252844,3252450,3252057,3251734,3251593,3251283,3250747,3250370,3250147,3249866,3249592,3249276,3248875,3248652,3248305,3248109	
chr7	3254334	3260295	3254515	3259214	+	Cre07.g334250.t1.1	Cre07.g334250.t1.1		3254334,3254735,3255369,3255790,3256156,3256402,3256679,3256973,3257408,3257670,3258034,3258350,3258699,3259129	3254591,3255139,3255609,3255946,3256212,3256518,3256824,3257249,3257476,3257866,3258124,3258511,3258844,3260295	
chr7	3260474	3278715	3261085	3277537	+	Cre07.g334300.t1.1	Cre07.g334300.t1.1		3260474,3261028,3262972,3263594,3263829,3264674,3264937,3265290,3265610,3265882,3266136,3266316,3266511,3266754,3267141,3267735,3268485,3268839,3269247,3269601,3269902,3270332,3270846,3271122,3271506,3271843,3272080,3272578,3272876,3273269,3273735,3274003,3274346,3274599,3274963,3275221,3275550,3275760,3276070,3276486,3276780,3277078	3260717,3262826,3263318,3263703,3264372,3264749,3265037,3265389,3265735,3265976,3266201,3266366,3266573,3267004,3267597,3268322,3268654,3269029,3269353,3269720,3270078,3270674,3270964,3271262,3271598,3271910,3272365,3272631,3273039,3273422,3273809,3274122,3274414,3274703,3275037,3275346,3275638,3275826,3276149,3276621,3276875,3278715	C-terminal domain similar to transient receptor potential Ca2+ channel, involved in Ca2+ homeostasis; N-terminal region has G-protein beta WD-40 repeats; member of a family of at least 8 TRP proteins
chr7	3278738	3283123	3279390	3283038	-	Cre07.g334350.t1.2	Cre07.g334350.t1.2		3282945,3282602,3282194,3281833,3281494,3280890,3280517,3280161,3279780,3278738	3283123,3282745,3282274,3281997,3281592,3280970,3280597,3280285,3279924,3279537	
chr7	3283227	3287263	3283603	3287001	-	EXN10	Cre07.g334400.t1.2		3285799,3285357,3284962,3284230,3283975,3283227	3287263,3285582,3285012,3284303,3284044,3283738	
chr7	3287374	3296825	3287780	3296294	+	Cre07.g334450.t1.1	Cre07.g334450.t1.1		3287374,3289247,3290842,3291225,3291490,3291748,3292766,3292953,3293205,3293387,3293980,3294298,3294540,3295250	3289052,3290713,3291042,3291323,3291570,3291858,3292817,3293023,3293272,3293870,3294081,3294420,3295073,3296825	contains EF-hand Calcium binding domain pair; model could be a fusion with upstream unrelated gene
chr7	3298723	3300553	3299244	3300384	-	PSAO1	Cre07.g334550.t1.2		3300289,3300104,3299525,3298723	3300553,3300169,3299653,3299335	Chloroplast precursor
chr7	3301418	3311563	3303045	3311323	-	Cre07.g334575.t1.1	Cre07.g334575.t1.1		3309665,3308899,3308619,3308404,3308191,3307425,3301418	3311563,3309472,3308771,3308454,3308258,3308052,3307320	
chr7	3311694	3313170	3312126	3312376	+	CGL20	Cre07.g334600.t1.2		3311694,3312112	3311978,3313170	
chr7	3313178	3319793	3313956	3319583	-	Cre07.g334650.t1.1	Cre07.g334650.t1.1		3319556,3319079,3318868,3318609,3317740,3317360,3316787,3315416,3315124,3314822,3314516,3313178	3319793,3319122,3318921,3318708,3318345,3317539,3317265,3316548,3315221,3314926,3314723,3314303	
chr7	3319924	3323372	3319969	3322388	+	Cre07.g334700.t1.2	Cre07.g334700.t1.2		3319924,3320074,3320176,3320432,3320649,3320970,3321170,3321643,3321948,3322288	3320005,3320110,3320261,3320497,3320732,3320995,3321363,3321704,3322036,3323372	
chr7	3323584	3332095	3324332	3330765	+	Cre07.g334750.t1.1	Cre07.g334750.t1.1		3323584,3325002,3325381,3326159,3326580,3326890,3327134,3327389,3327713,3328060,3328463,3328883,3329153,3329493,3330199,3330546	3324542,3325096,3325468,3326359,3326728,3326974,3327259,3327528,3327794,3328308,3328738,3329029,3329260,3330023,3330357,3332095	
chr7	3332078	3332773	3332370	3332551	-	Cre07.g334776.t1.1	Cre07.g334776.t1.1		3332078	3332773	
chr7	3332888	3334805	3333527	3334713	-	FDX4	Cre07.g334800.t2.1		3334617,3334108,3333697,3332888	3334805,3334248,3333816,3333566	Fe2S2 containing redox protein, predicted chloroplast localization
chr7	3332118	3334805	3333527	3334713	-	FDX4	Cre07.g334800.t1.2		3334617,3334108,3333697,3332118	3334805,3334248,3333816,3333566	Fe2S2 containing redox protein, predicted chloroplast localization
chr7	3334955	3337822	3335380	3337392	+	HEP1	Cre07.g334851.t1.1		3334955,3335971,3336448,3336779,3337302	3335721,3336037,3336508,3337032,3337822	Matrix factor involved in mitochondrial protein import. Similar to Arabidopsis HEP1 (AT3G54826.1) and to yeast HEP1 (YNL310C).
chr7	3338254	3345916	3338575	3345281	+	Cre07.g334900.t1.1	Cre07.g334900.t1.1		3338254,3339074,3339311,3339636,3340007,3340712,3341231,3341879,3342250,3342832,3343095,3343497,3345179	3338903,3339132,3339382,3339722,3340451,3341056,3341712,3342049,3342573,3342891,3343205,3344873,3345916	
chr7	3346098	3359753	3348484	3359624	-	Cre07.g334950.t1.1	Cre07.g334950.t1.1		3359408,3359230,3359046,3358830,3358079,3357401,3357135,3356648,3356349,3355972,3355293,3354975,3354583,3354044,3353556,3353286,3352950,3352664,3352283,3352008,3351689,3351372,3351020,3350804,3350582,3349950,3349633,3349226,3346098	3359753,3359345,3359128,3358870,3358513,3357886,3357229,3356968,3356508,3356144,3355731,3355058,3354676,3354277,3353843,3353351,3353029,3352743,3352394,3352196,3351751,3351489,3351171,3350857,3350641,3350330,3349703,3349340,3349051	
chr7	3362067	3370153	3362885	3369096	+	Cre07.g335000.t1.1	Cre07.g335000.t1.1		3362067,3362544,3362882,3363829,3364618,3366742	3362349,3362590,3363681,3364463,3366616,3370153	
chr7	3362067	3370153	3362885	3369096	+	Cre07.g335000.t2.1	Cre07.g335000.t2.1		3362067,3362544,3362720,3362882,3363829,3364618,3366742	3362349,3362590,3362747,3363681,3364463,3366616,3370153	
chr7	3370737	3381271	3370948	3379963	+	Cre07.g335050.t1.1	Cre07.g335050.t1.1		3370737,3371113,3371334,3371623,3371875,3372177,3372526,3373239,3373543,3374197,3374620,3376411,3376652,3377311,3377547,3377964,3378223,3378669,3379471	3370960,3371228,3371414,3371665,3371946,3372274,3372643,3373400,3374034,3374351,3376237,3376476,3377113,3377407,3377870,3378070,3378512,3379320,3381271	
chr7	3385617	3388626	3385757	3388185	+	Cre07.g335100.t1.2	Cre07.g335100.t1.2		3385617,3386340,3386878,3387469,3387655,3387896,3388130	3385889,3386484,3386981,3387527,3387670,3387948,3388626	
chr7	3388701	3395166	3390055	3394964	-	Cre07.g335150.t1.1	Cre07.g335150.t1.1		3394883,3394462,3394232,3388701	3395166,3394509,3394353,3394022	
chr7	3398407	3403661	3398995	3403560	-	EFG12	Cre07.g335200.t1.1		3403451,3403063,3402835,3402626,3402345,3402082,3401749,3401464,3401152,3400854,3400289,3399951,3399523,3398407	3403661,3403167,3402912,3402684,3402443,3402184,3401937,3401543,3401313,3401021,3400422,3400071,3399776,3399386	Related to GTP-binding protein LepA,TypA, SVR3; Target P suggests organellar localization
chr7	3404927	3409278	3405709	3409247	+	Cre07.g335226.t1.1	Cre07.g335226.t1.1		3404927,3405668,3406147,3406391,3408917	3405213,3405929,3406312,3408647,3409278	
chr7	3425357	3430876	3425472	3430101	+	Cre07.g335250.t1.2	Cre07.g335250.t1.2		3425357,3426545,3426795,3427118,3427451,3427697,3427909,3428266,3428572	3426378,3426628,3426990,3427217,3427604,3427729,3428106,3428455,3430876	
chr7	3431377	3438184	3431643	3437282	+	KAS2	Cre07.g335300.t1.2		3431377,3431711,3431910,3432601,3432971,3433275,3433712,3434337,3434913,3435252,3435571,3435959,3436255,3436607,3436866,3437209	3431650,3431757,3431972,3432723,3433018,3433406,3433805,3434478,3435015,3435339,3435696,3436050,3436339,3436669,3436959,3438184	Component of plastidic multimeric fatty acid synthase
chr7	3438379	3442626	3439920	3441913	-	Cre07.g335350.t1.1	Cre07.g335350.t1.1		3441160,3440708,3438379	3442626,3441085,3440607	
chr7	3443082	3450862	3443288	3450179	+	Cre07.g335400.t1.1	Cre07.g335400.t1.1		3443082,3443278,3443756,3444285,3444664,3445089,3445425,3445846,3446103,3446424,3446830,3447181,3447480,3447755,3447934,3448208,3448448,3448695,3448960,3449229,3449524,3449751,3450071	3443141,3443433,3443859,3444344,3444754,3445208,3445507,3445902,3446211,3446535,3446957,3447280,3447570,3447808,3448003,3448281,3448525,3448739,3449056,3449272,3449582,3449865,3450862	
chr7	3451227	3457987	3451450	3456952	+	Cre07.g335451.t1.1	Cre07.g335451.t1.1		3451227,3453474,3456221,3456902	3452999,3454819,3456377,3457987	
chr7	3458077	3463748	3458500	3463116	+	Cre07.g335500.t1.1	Cre07.g335500.t1.1		3458077,3460440,3461324,3461668	3460336,3461172,3461470,3463748	
chr7	3464571	3468346	3464927	3468075	-	Cre07.g335550.t1.1	Cre07.g335550.t1.1		3465492,3464571	3468346,3465344	
chr7	3468477	3472853	3468603	3471924	+	NAR1.4	Cre07.g335600.t1.2		3468477,3468857,3469351,3469541,3469754,3470090,3470536,3470821,3471179,3471354,3471703	3468726,3469054,3469392,3469607,3469822,3470215,3470618,3470964,3471212,3471467,3472853	Formate nitrite transporter [NCBI Accession number AY612640]
chr7	3475507	3485179	3475971	3482935	+	Cre07.g335650.t1.1	Cre07.g335650.t1.1		3475507,3475967,3476665,3478842,3479734,3480160,3480511,3482707	3475808,3476340,3478634,3479496,3479900,3480345,3482509,3485179	
chr7	3485181	3486926	3485844	3486904	-	Cre07.g335700.t1.2	Cre07.g335700.t1.2		3486704,3486403,3486106,3485181	3486926,3486493,3486192,3485952	
chr7	3486976	3492847	3487902	3492707	-	IFT88	Cre07.g335750.t1.1		3492686,3492557,3492424,3491967,3491427,3491126,3490659,3490303,3490007,3489463,3489127,3488839,3488266,3486976	3492847,3492604,3492481,3492293,3491506,3491219,3490993,3490467,3490162,3489672,3489270,3488960,3488629,3488127	Component of core of IFT-B particle
chr7	3492987	3495898	3493265	3495081	+	TWI1	Cre07.g335800.t1.1		3492987,3493406,3493643,3494293,3494748,3494963	3493334,3493499,3493742,3494426,3494799,3495898	Similar to cystic kidney disease gene twister
chr7	3496000	3498891	3496096	3497389	+	Cre07.g335850.t1.2	Cre07.g335850.t1.2		3496000,3496265,3496535,3497094	3496131,3496415,3496674,3498891	
chr7	3498947	3503951	3499463	3502733	+	Cre07.g335900.t1.2	Cre07.g335900.t1.2		3498947,3499658,3500143,3500571,3500859,3501122,3501520,3501886,3502229	3499557,3499916,3500311,3500647,3500935,3501201,3501654,3502047,3503951	
chr7	3503981	3506846	3505130	3506741	-	Cre07.g335950.t1.2	Cre07.g335950.t1.2		3506717,3506576,3506127,3503981	3506846,3506655,3506290,3505924	
chr7	3507666	3509909	3507786	3509536	+	Cre07.g336000.t1.1	Cre07.g336000.t1.1		3507666,3508013,3508335,3508542,3508858,3509023,3509204,3509462	3507868,3508206,3508407,3508688,3508916,3509091,3509234,3509909	
chr7	3509957	3517954	3510011	3517283	+	Cre07.g336050.t1.2	Cre07.g336050.t1.2		3509957,3510173,3510410,3510670,3511084,3511377,3511804,3512195,3512624,3512972,3513686,3514022,3514266,3515057,3515466,3515824,3516185,3516618,3517079	3510106,3510242,3510472,3510783,3511179,3511460,3511878,3512339,3512732,3513049,3513824,3514082,3514697,3515183,3515580,3515966,3516396,3516763,3517954	
chr7	3518277	3520438	3518405	3519542	+	Cre07.g336100.t1.2	Cre07.g336100.t1.2		3518277,3518721,3519175,3519461	3518465,3518876,3519243,3520438	
chr7	3520487	3523028	3520612	3522522	+	Cre07.g336150.t1.2	Cre07.g336150.t1.2		3520487,3520785,3521211,3521510	3520665,3520898,3521312,3523028	
chr7	3523168	3537266	3524020	3537173	-	Cre07.g336200.t1.1	Cre07.g336200.t1.1		3537127,3536955,3536800,3536373,3535983,3535626,3535269,3534765,3534421,3533461,3533086,3532754,3532465,3532054,3531663,3531395,3530926,3530285,3529830,3529427,3528870,3528398,3527773,3527368,3526747,3526035,3525599,3524993,3524649,3523168	3537266,3537049,3536879,3536536,3536176,3535688,3535349,3534857,3534465,3533621,3533149,3532852,3532643,3532145,3531709,3531502,3531071,3530351,3529993,3529518,3529003,3528516,3527908,3527448,3526938,3526511,3525718,3525337,3524751,3524241	
chr7	3537341	3539286	3537643	3539174	-	Cre07.g336250.t1.2	Cre07.g336250.t1.2		3538865,3538580,3538289,3537341	3539286,3538744,3538362,3538055	
chr7	3541952	3546448	3542426	3545954	+	Cre07.g336300.t1.1	Cre07.g336300.t1.1		3541952,3542821,3543103,3543804,3544075,3544890,3545209,3545563	3542637,3542838,3543153,3543845,3544095,3544919,3545320,3546448	
chr7	3554286	3558711	3555296	3558553	-	Cre07.g336350.t1.1	Cre07.g336350.t1.1		3558235,3557896,3555750,3554286	3558711,3558012,3557615,3555479	
chr7	3559092	3562343	3559409	3562036	+	Cre07.g336400.t1.1	Cre07.g336400.t1.1		3559092,3559504,3559757,3560150,3560458,3560755,3561173,3561550	3559433,3559512,3559994,3560250,3560505,3560859,3561388,3562343	
chr7	3562352	3564124	3562991	3564042	-	Cre07.g336450.t1.2	Cre07.g336450.t1.2		3563945,3563344,3562352	3564124,3563450,3563126	
chr7	3564242	3571763	3565134	3571432	+	OPR114	Cre07.g336500.t1.1		3564242,3564997,3567860,3570455,3570826	3564867,3567678,3570270,3570701,3571763	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 220 codons at 5'-end: MHKTLYNNANTWSSARARAESTSNLIIGSAATHASSTGRHTAAPRAIARPDSLLNEEFSTLPLGADSTNDRLAARLLRPRRVERPHPGASNVPPATIHDKRSGPHGAVSDSGPSSPELPTDGVTRIGTAAAYHAAAAATSRNGASHQHDAATSEVARRQATPAAAPVVAPAMDKASCLRALEGLAASAGGWGVGGAGGVGAGSRGRHSSHTAGAVATGHE
chr7	3571766	3574381	3571892	3573979	-	Cre07.g336550.t1.1	Cre07.g336550.t1.1		3573926,3573694,3573284,3571766	3574381,3573807,3573385,3573078	null-allele mutant was isolated (PMID 29743196)
chr7	3575876	3582611	3576693	3581942	-	MAN1	Cre07.g336600.t1.1		3581205,3580742,3580328,3580067,3579820,3579337,3579001,3577971,3577652,3577486,3577295,3575876	3582611,3580844,3580408,3580170,3579977,3579536,3579178,3578720,3577736,3577540,3577408,3577149	member of the O-glycoside hydrolases family 47; members hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety
chr7	3575876	3582361	3576693	3581942	-	MAN1	Cre07.g336600.t2.1		3581205,3580742,3580328,3580067,3579820,3579337,3579001,3577971,3577652,3577486,3577295,3575876	3582361,3580844,3580408,3580170,3579977,3579536,3579178,3578720,3577736,3577540,3577408,3577149	member of the O-glycoside hydrolases family 47; members hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety
chr7	3582922	3591353	3583498	3591177	+	MLH3	Cre07.g336650.t1.1		3582922,3584149,3584457,3589897,3590721	3584013,3584263,3589676,3590514,3591353	MutL homolog; ortholog of yeast and human MLH3 [PMID: 17992532].  Homolog of MutL, which forms a complex with MutS
chr7	3582922	3591353	3583498	3591177	+	MLH3	Cre07.g336650.t2.1		3582922,3584149,3584457,3589897,3590721	3584013,3584221,3589676,3590514,3591353	MutL homolog; ortholog of yeast and human MLH3 [PMID: 17992532].  Homolog of MutL, which forms a complex with MutS
chr7	3591364	3594171	3591570	3593408	-	Cre07.g336700.t1.1	Cre07.g336700.t1.1		3593391,3592920,3592571,3592346,3591821,3591364	3594171,3593226,3592803,3592421,3592226,3591629	
chr7	3594302	3611067	3594407	3610447	+	Cre07.g336750.t1.1	Cre07.g336750.t1.1		3594302,3594518,3594694,3594981,3595172,3595582,3596003,3596382,3596768,3597109,3597598,3597915,3598239,3598540,3604086,3604561,3606095,3606584,3606927,3607271,3609002,3609434,3609931	3594455,3594622,3594733,3595044,3595349,3595695,3596137,3596498,3596932,3597453,3597762,3598076,3598382,3603759,3604268,3605883,3606361,3606775,3607122,3608802,3609136,3609697,3611067	
chr7	3611516	3613640	3612332	3613371	-	Cre07.g336800.t1.1	Cre07.g336800.t1.1		3613358,3613094,3612748,3611516	3613640,3613139,3612879,3612345	
chr7	3614522	3617617	3614709	3616558	+	Cre07.g336850.t1.2	Cre07.g336850.t1.2		3614522,3614673,3614931,3615315,3615617,3615886,3616192	3614614,3614806,3615072,3615354,3615672,3615985,3617617	
chr7	3617672	3620862	3617912	3619402	+	Cre07.g336900.t1.1	Cre07.g336900.t1.1		3617672,3618147,3618532,3618724,3618932,3619281	3617999,3618293,3618572,3618817,3619128,3620862	null-allele mutant was isolated (PMID 29743196)
chr7	3621954	3629865	3622563	3629755	-	PHO2	Cre07.g336950.t1.1		3629444,3628953,3628501,3628244,3627757,3627153,3626512,3626117,3625711,3625403,3625014,3624597,3624276,3623947,3623595,3623280,3622943,3621954	3629865,3629232,3628593,3628318,3627888,3627275,3626685,3626218,3625835,3625511,3625129,3624762,3624484,3624059,3623784,3623370,3623046,3622669	gi 400790 sp Q00766 PHS1_DICDI GLYCOGEN PHOSPHORYLASE 1 (GP1); starch phosphorylase (EC 2.4.1.1); identical to PHOA gene of Chlamydomonas reinhardtii (GenBank ABB88569)
chr7	3630502	3637351	3630985	3637240	-	CSD3	Cre07.g337000.t1.2		3637183,3636857,3636610,3636229,3635810,3635470,3635197,3634892,3634559,3633811,3633548,3633129,3632556,3632144,3631391,3630502	3637351,3637007,3636703,3636313,3635917,3635543,3635279,3634956,3634654,3633864,3633604,3633248,3632615,3632311,3631897,3631153	May have isopenicillin N-epimerase activity
chr7	3637452	3642243	3637519	3641723	+	Cre07.g337050.t1.2	Cre07.g337050.t1.2		3637452,3637707,3637982,3638307,3638589,3639507,3640081,3640408,3641638	3637621,3637795,3638085,3638393,3639021,3639629,3640147,3641216,3642243	
chr7	3642543	3644557	3643491	3644335	-	Cre07.g337100.t1.2	Cre07.g337100.t1.2		3644281,3644029,3642543	3644557,3644137,3643658	
chr7	3644616	3647001	3645073	3646986	-	Cre07.g337125.t1.1	Cre07.g337125.t1.1		3646455,3645790,3644616	3647001,3646227,3645619	
chr7	3647057	3650688	3647333	3650472	-	RFC2	Cre07.g337150.t1.2		3650397,3650206,3649804,3649398,3649022,3648540,3648047,3647660,3647057	3650688,3650316,3649910,3649499,3649217,3648620,3648184,3647764,3647441	Homologous to eukaryotic RFC2 (DNA replication factor C complex subunit 2); accessory protein of DNA polymerase.
chr7	3651442	3652457	3651627	3652108	+	Cre07.g337200.t1.2	Cre07.g337200.t1.2		3651442	3652457	
chr7	3652742	3657753	3652993	3656663	+	Cre07.g337250.t1.2	Cre07.g337250.t1.2		3652742	3657753	
chr7	3657759	3666051	3658957	3665837	-	STD1	Cre07.g337300.t1.1		3665589,3665304,3664503,3663964,3663114,3662277,3661813,3661409,3661055,3660525,3660209,3659910,3659414,3657759	3666051,3665488,3665229,3664292,3663752,3662786,3662017,3661508,3661174,3660736,3660332,3659972,3659598,3659096	Acts as a negative regulator of the sink capacity of photosynthetic cells
chr7	3666172	3671865	3666471	3671403	+	Cre07.g337350.t1.1	Cre07.g337350.t1.1		3666172,3666761,3667045,3667687,3667950,3668198,3669019,3669374,3669762,3670209,3670479,3670740,3671047,3671295	3666488,3666850,3667273,3667792,3668002,3668815,3669171,3669422,3669946,3670330,3670512,3670888,3671071,3671865	
chr7	3671916	3673041	3672213	3672811	-	Cre07.g337400.t1.2	Cre07.g337400.t1.2		3671916	3673041	
chr7	3673142	3679283	3673174	3678239	+	CGL75	Cre07.g337450.t1.1		3673142,3673727,3674055,3674643,3675168,3675379,3675904,3676374,3676609,3677136,3677413,3677645,3678128	3673458,3673816,3674379,3674742,3675220,3675702,3676131,3676422,3676967,3677257,3677446,3677818,3679283	Glycosyl transferase GT90 family protein 9
chr7	3679849	3684891	3681228	3684672	-	Cre07.g337516.t1.1	Cre07.g337516.t1.1		3684601,3683804,3683127,3682595,3681845,3681566,3679849	3684891,3684449,3683546,3682825,3682255,3681622,3681438	Conserved protein with methyltransferase motif; related to modification methylase hemK
chr7	3685012	3706616	3685168	3706154	+	Cre07.g337582.t1.1	Cre07.g337582.t1.1		3685012,3685498,3685995,3686432,3686745,3687200,3688247,3689062,3689400,3689795,3690696,3691185,3691658,3692163,3692719,3694887,3695358,3695897,3696492,3697296,3697804,3698192,3698834,3700660,3701314,3701932,3702505,3703742,3704588,3704954,3705339,3705770	3685240,3685681,3686193,3686570,3686995,3687950,3688368,3689241,3689475,3690406,3690824,3691316,3691803,3692259,3692991,3694964,3695498,3696058,3696635,3697479,3697886,3698356,3700418,3700818,3701411,3702099,3702810,3704275,3704718,3705017,3705425,3706616	
chr7	3706658	3712561	3707378	3712216	-	PDC1	Cre07.g337650.t1.2		3711985,3711413,3710847,3709526,3708988,3708538,3707933,3706658	3712561,3711514,3711029,3709618,3709143,3708715,3708024,3707534	Alpha subunit of the E1 component of the mitochondrial pyruvate dehydrogenase complex (mtPDC), that catalyzes the oxidative decarboxylation of pyruvate, yielding acetyl-CoA and NADH to support the Krebs cycle and oxidative phosphorylation. A plastid PDC also exists.
chr7	3713222	3714213	3713319	3713919	+	Cre07.g337676.t1.1	Cre07.g337676.t1.1		3713222,3713681	3713504,3714213	
chr7	3714239	3719491	3714515	3717460	-	Cre07.g337700.t1.1	Cre07.g337700.t1.1		3719313,3716515,3715945,3714239	3719491,3717612,3716263,3715672	
chr7	3719632	3722963	3719901	3722493	+	EBM5	Cre07.g337750.t1.1		3719632,3719900,3720190,3720543,3720851,3721220,3721488,3721633,3721855,3722098,3722417	3719656,3719970,3720263,3720681,3720955,3721320,3721527,3721656,3721902,3722240,3722963	
chr7	3722996	3724681	3723294	3724465	-	MRPS17	Cre07.g337800.t1.2		3724438,3724208,3723903,3722996	3724681,3724309,3723961,3723769	
chr7	3724802	3731113	3725078	3730233	+	Cre07.g337850.t1.1	Cre07.g337850.t1.1		3724802,3725247,3725836,3726448,3726735,3727282,3727730,3728011,3728600,3729365,3729967	3725105,3725423,3725961,3726536,3726840,3727389,3727810,3728410,3728811,3729536,3731113	
chr7	3731262	3733339	3731298	3732552	+	Cre07.g337900.t1.1	Cre07.g337900.t1.1		3731262,3731440	3731371,3733339	
chr7	3733472	3735790	3733505	3735309	+	Cre07.g337914.t1.2	Cre07.g337914.t1.2		3733472,3735309	3735027,3735790	
chr7	3736499	3738270	3736548	3737744	+	Cre07.g337933.t1.1	Cre07.g337933.t1.1		3736499,3737737	3737390,3738270	
chr7	3738329	3740470	3738355	3740287	+	Cre07.g337950.t1.2	Cre07.g337950.t1.2		3738329,3740219	3739901,3740470	
chr7	3740543	3749718	3741453	3749470	-	MCM2	Cre07.g338000.t1.2		3749467,3749300,3748955,3748698,3748344,3747806,3747243,3746793,3746470,3746133,3745754,3745266,3744762,3744260,3743977,3743551,3743089,3742583,3742124,3741927,3740543	3749718,3749397,3749139,3748774,3748409,3747965,3747376,3746899,3746574,3746220,3745913,3745439,3744917,3744546,3744080,3743715,3743254,3742680,3742214,3741989,3741630	Homologous to MCM2 DNA replication protein
chr7	3750198	3754278	3750835	3754175	-	ASA3	Cre07.g338050.t1.2		3754129,3753925,3753697,3753430,3752499,3752004,3751555,3751182,3750198	3754278,3754032,3753815,3753611,3752589,3752191,3751664,3751332,3750941	Mitochondrial ATP synthase associated protein 3; part of peripheral stalk involed in dimerization; unknown evolutionary origin [PMID: 11744727, PMID: 15710684]
chr7	3755659	3758720	3756373	3758019	+	Cre07.g338100.t1.2	Cre07.g338100.t1.2		3755659,3756798,3757163	3756435,3756902,3758720	
chr7	3758734	3766348	3761238	3765538	-	RNP1	Cre07.g338150.t1.1		3765929,3765451,3765283,3765075,3764761,3764309,3763891,3763599,3761979,3758734	3766348,3765554,3765361,3765198,3764965,3764488,3764163,3763739,3763466,3761838	similar to plant AML and TEL genes and to yeast mei2 (PMID: 15356386); contains a RRM (RNP-1) motif
chr7	3766523	3771318	3766858	3771185	-	Cre07.g338200.t1.2	Cre07.g338200.t1.2		3771095,3770769,3770463,3770262,3769278,3768824,3768401,3767735,3766523	3771318,3770873,3770566,3770334,3769439,3768962,3768569,3767801,3767335	
chr7	3771469	3774862	3771537	3774422	+	Cre07.g338250.t1.1	Cre07.g338250.t1.1		3771469,3772053,3772424,3772791,3773188,3773496,3773728,3774096,3774353	3771696,3772157,3772493,3772872,3773254,3773600,3773787,3774179,3774862	
chr7	3774893	3782598	3776599	3782228	-	FBB14	Cre07.g338300.t1.1		3781937,3781787,3781480,3781313,3780878,3780592,3780129,3779598,3778838,3774893	3782598,3781855,3781683,3781417,3780964,3780699,3780317,3779759,3779338,3778552	Conserved protein found in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr7	3782778	3788638	3783406	3788274	-	CPLD50	Cre07.g338350.t1.2		3787959,3787506,3787135,3786553,3786249,3785802,3785165,3784807,3784248,3782778	3788638,3787601,3787227,3786805,3786324,3785942,3785402,3784893,3784426,3783845	
chr7	3788779	3792951	3789005	3792581	+	Cre07.g338400.t1.1	Cre07.g338400.t1.1		3788779,3789422,3789881,3790393,3791067,3791554,3791833,3792191	3789156,3789608,3790036,3790483,3791197,3791610,3791908,3792951	
chr7	3793109	3800376	3793495	3798055	+	FBP1	Cre07.g338451.t1.1		3793109,3793775,3794367,3794753,3794997,3795501,3795835,3796253,3796470,3797032,3797459,3797852	3793556,3793914,3794450,3794793,3795078,3795581,3795912,3796312,3796602,3797147,3797594,3800376	fructose-1,6-/sedoheptulose-1,7-bisphosphatase
chr7	3800449	3805250	3800785	3804768	+	Cre07.g338500.t1.1	Cre07.g338500.t1.1		3800449,3801647,3802109	3801375,3801823,3805250	
chr7	3805265	3836298	3807362	3836005	-	Cre07.g338550.t1.1	Cre07.g338550.t1.1		3835876,3835144,3834660,3834038,3833545,3832176,3831782,3831192,3829676,3828616,3828110,3827612,3827135,3826426,3826022,3825659,3825334,3824668,3824213,3823518,3823131,3821014,3820737,3820323,3819938,3819244,3818768,3812045,3811616,3811330,3810770,3810271,3809876,3809340,3808848,3808364,3805265	3836298,3835257,3834761,3834399,3833610,3833337,3831949,3831585,3831016,3829457,3828256,3827806,3827360,3826535,3826111,3825766,3825415,3825056,3824356,3823976,3823277,3822773,3820863,3820403,3820087,3819616,3818934,3818536,3811768,3811422,3811099,3810353,3809939,3809501,3809012,3808506,3807909	null-allele mutant was isolated (PMID 29743196)
chr7	3836419	3845070	3836510	3844804	+	POLH1	Cre07.g338602.t1.1		3836419,3836661,3837134,3838101,3838414,3839854,3840811,3841180,3841601,3842009,3842381,3842833,3843336	3836543,3836740,3837252,3838231,3838590,3840211,3840876,3841280,3841740,3842063,3842531,3842950,3845070	Homologous to eukaryotic ; Xeroderma pigmentosum complementation group Variant (XPV); Rad30; Chlamydomonas has at least two homologues of Rad30. Class X polymerase; nuclear; functions in translesion synthesis (TLS) of damaged DNA.
chr7	3847599	3850624	3848059	3850207	+	CSC3	Cre07.g338650.t1.1		3847599,3848373,3848652,3849297,3850118	3848182,3848438,3848961,3849446,3850624	function unknown; homologs in Gonium, not Volvox
chr7	3850829	3851930	3850939	3851630	+	Cre07.g338665.t1.2	Cre07.g338665.t1.2		3850829	3851930	
chr7	3851933	3856228	3852742	3854942	-	Cre07.g338700.t1.1	Cre07.g338700.t1.1		3855993,3855582,3854904,3854665,3854414,3854042,3853565,3853271,3851933	3856228,3855852,3854985,3854761,3854472,3854179,3853682,3853346,3852912	
chr7	3851933	3856228	3852742	3854955	-	Cre07.g338700.t2.1	Cre07.g338700.t2.1		3855993,3855582,3854904,3854683,3854042,3853565,3853271,3851933	3856228,3855852,3854985,3854747,3854179,3853682,3853346,3852912	
chr7	3856339	3859210	3856613	3858848	+	Cre07.g338750.t1.1	Cre07.g338750.t1.1		3856339,3856809,3857153,3857473	3856663,3856856,3857263,3859210	
chr7	3856339	3859210	3856613	3858848	+	Cre07.g338750.t2.1	Cre07.g338750.t2.1		3856339,3856812,3857153,3857473	3856663,3856856,3857263,3859210	
chr7	3856479	3859210	3856613	3858848	+	Cre07.g338750.t3.1	Cre07.g338750.t3.1		3856479,3856812,3857153,3857473	3856663,3856856,3857263,3859210	
chr7	3859213	3862288	3859976	3861653	-	CGL125	Cre07.g338800.t1.1		3862015,3861594,3861154,3860822,3860506,3859213	3862288,3861858,3861291,3860939,3860581,3860146	
chr7	3859213	3862288	3859976	3861653	-	CGL125	Cre07.g338800.t2.1		3862015,3861594,3861154,3860822,3860506,3859213	3862288,3861872,3861291,3860939,3860581,3860146	
chr7	3862989	3866230	3863713	3865936	+	Cre07.g338850.t1.2	Cre07.g338850.t1.2		3862989,3863909,3864253,3864573	3863763,3863956,3864363,3866230	
chr7	3862989	3866230	3863713	3865936	+	Cre07.g338850.t2.1	Cre07.g338850.t2.1		3862989,3863912,3864253,3864573	3863763,3863956,3864363,3866230	
chr7	3866253	3874778	3867072	3874695	-	Cre07.g338900.t1.1	Cre07.g338900.t1.1		3874565,3874338,3873978,3873565,3873009,3872282,3871792,3870500,3869894,3869326,3868972,3868345,3867856,3867566,3866253	3874778,3874436,3874054,3873699,3873105,3872464,3871928,3870706,3870050,3869483,3869087,3868482,3867973,3867641,3867242	
chr7	3874949	3883384	3875286	3882879	+	Cre07.g338950.t1.2	Cre07.g338950.t1.2		3874949,3875278,3875551,3876179,3877504	3875032,3875386,3876052,3877338,3883384	
chr7	3883829	3886910	3883953	3886615	+	Cre07.g339000.t1.1	Cre07.g339000.t1.1		3883829,3884249,3884816,3885140,3885712,3886069	3884074,3884372,3884876,3885250,3885774,3886910	
chr7	3886959	3890991	3887063	3890270	+	NSG11	Cre07.g339050.t1.2		3886959,3888029,3888543,3888846,3889107,3889405,3890198	3887567,3888100,3888584,3888930,3889173,3889501,3890991	Identified by Abe et al. 24 [PMID: 15459796] as NSG11, a gene expressed during nitrogen-starved gametogenesis.
chr7	3891069	3904525	3891633	3904185	+	Cre07.g339100.t1.1	Cre07.g339100.t1.1		3891069,3891522,3893856,3894180,3894607,3895304,3895768,3896076,3896437,3896815,3897075,3897714,3898049,3898502,3899498,3903243	3891358,3893483,3893904,3894326,3894933,3895413,3895826,3896158,3896550,3896899,3897427,3897821,3898208,3899257,3903066,3904525	
chr7	3904579	3921990	3904640	3921337	+	Cre07.g339104.t1.2	Cre07.g339104.t1.2		3904579,3904966,3905286,3905748,3906289,3906684,3907267,3907913,3908117,3908663,3909085,3909658,3909983,3910491,3911060,3911773,3912019,3912433,3912678,3913193,3913789,3914046,3914828,3916050,3916451,3917013,3917377,3918003,3918492,3919482,3919902,3920285,3920879,3921207	3904762,3905109,3905439,3906056,3906525,3907010,3907418,3907946,3908301,3908758,3909199,3909808,3910112,3910599,3911406,3911829,3912073,3912520,3912751,3913336,3913874,3914651,3915824,3916172,3916764,3917136,3917493,3918131,3918587,3919634,3920001,3920472,3920934,3921990	
chr7	3904579	3921990	3904640	3921337	+	Cre07.g339104.t2.1	Cre07.g339104.t2.1		3904579,3904966,3905286,3905748,3906289,3906684,3907267,3907913,3908117,3908663,3909085,3909658,3909983,3910491,3911060,3911773,3912019,3912433,3912678,3913193,3913789,3914046,3914828,3916053,3916451,3917013,3917377,3918003,3918492,3919482,3919902,3920285,3920879,3921207	3904762,3905109,3905439,3906056,3906525,3907010,3907418,3907946,3908301,3908758,3909199,3909808,3910112,3910599,3911406,3911829,3912073,3912520,3912751,3913336,3913874,3914651,3915824,3916172,3916764,3917136,3917493,3918131,3918587,3919634,3920001,3920472,3920934,3921990	
chr7	3921995	3929073	3922819	3929042	-	CPN60B2	Cre07.g339150.t1.1		3929022,3928855,3928492,3928274,3927454,3927077,3926785,3926127,3925451,3925052,3924676,3924324,3923950,3923549,3923154,3921995	3929073,3928905,3928564,3928324,3927579,3927193,3926850,3926219,3925579,3925234,3924804,3924518,3924084,3923707,3923233,3922946	
chr7	3929312	3932278	3931034	3932171	-	Cre07.g339200.t1.2	Cre07.g339200.t1.2		3932004,3931859,3931709,3931407,3929312	3932278,3931919,3931759,3931524,3931225	
chr7	3929312	3932298	3931034	3932090	-	Cre07.g339200.t2.1	Cre07.g339200.t2.1		3932004,3931859,3931709,3931407,3929312	3932298,3931919,3931759,3931524,3931225	
chr7	3932854	3934927	3933539	3934740	-	Cre07.g339250.t1.2	Cre07.g339250.t1.2		3932854	3934927	
chr7	3935110	3938639	3936308	3938508	-	Cre07.g339300.t1.2	Cre07.g339300.t1.2		3938337,3937839,3937453,3937228,3936943,3936626,3935110	3938639,3938015,3937623,3937278,3937055,3936722,3936410	
chr7	3938748	3942478	3938782	3942006	+	Cre07.g339350.t1.1	Cre07.g339350.t1.1		3938748,3938950,3939263,3939593,3940072,3940426,3940711,3941235,3941838	3938857,3939060,3939367,3939699,3940153,3940528,3940871,3941600,3942478	
chr7	3942628	3949131	3942685	3948998	+	Cre07.g339400.t1.1	Cre07.g339400.t1.1		3942628,3943863,3944304,3944526,3945534,3945997,3947203,3947970,3948332,3948760	3943627,3944038,3944397,3944618,3945694,3946864,3947749,3948127,3948501,3949131	
chr7	3949322	3953437	3949651	3953060	-	Cre07.g339450.t1.1	Cre07.g339450.t1.1		3953378,3952835,3952553,3951612,3951188,3949322	3953437,3953276,3952612,3952154,3951293,3951054	
chr7	3953492	3955907	3953523	3955842	-	Cre07.g339500.t1.2	Cre07.g339500.t1.2		3955683,3955375,3955159,3954697,3953593,3953492	3955907,3955421,3955201,3954822,3954520,3953523	
chr7	3956018	3956689	3956087	3956645	+	FBB13	Cre07.g339550.t1.1		3956018,3956270,3956427	3956153,3956336,3956689	Conserved protein in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr7	3956738	3962393	3956759	3961505	+	Cre07.g339554.t1.2	Cre07.g339554.t1.2		3956738,3957430,3958102,3958664,3959429,3959923,3960289,3960643,3961106	3957127,3957706,3958230,3958949,3959594,3960016,3960367,3960878,3962393	
chr7	3962766	3965797	3963908	3965639	-	Cre07.g339600.t1.2	Cre07.g339600.t1.2		3965534,3965402,3965212,3964897,3964647,3962766	3965797,3965452,3965306,3965102,3964751,3964393	
chr7	3965938	3973349	3966718	3972106	+	DNJ20	Cre07.g339633.t1.1		3965938,3967257,3967601,3967888,3968529,3970053,3970401,3971218,3971534,3971902	3966993,3967329,3967682,3968222,3969883,3970207,3970600,3971286,3971638,3973349	DnaJ-like protein, probably cytosolic; contains N-terminal J-domain (pfam226) and DnaJ_C, DnaJ C terminal region (pfam1556); weak similarity to Xanthomonas axonopodis Q8PMA9 and to Porphyromonas gingivalis Q9XCA6
chr7	3965938	3973349	3966718	3972106	+	DNJ20	Cre07.g339633.t2.1		3965938,3967257,3967601,3967891,3968529,3970053,3970401,3971218,3971534,3971902	3966993,3967329,3967682,3968222,3969883,3970207,3970600,3971286,3971638,3973349	DnaJ-like protein, probably cytosolic; contains N-terminal J-domain (pfam226) and DnaJ_C, DnaJ C terminal region (pfam1556); weak similarity to Xanthomonas axonopodis Q8PMA9 and to Porphyromonas gingivalis Q9XCA6
chr7	3973398	3976615	3973512	3975599	+	SUFC	Cre07.g339700.t1.2		3973398,3974261,3974759,3975275,3975524	3974013,3974368,3974884,3975319,3976615	predicted ABC transporter activity; possibly localized to plastids
chr7	3976768	3981911	3977043	3980969	+	HEM2	Cre07.g339750.t1.2		3976768,3977226,3978429,3978831,3979321,3979948,3980370,3980568,3980769	3977159,3977901,3978566,3978928,3979439,3980082,3980509,3980604,3981911	Ferrochelatase, chloroplast precursor (Protoheme ferro-lyase)(Heme synthetase); matches gi:13249285; PMID: 16306143
chr7	3976768	3981911	3977043	3980969	+	HEM2	Cre07.g339750.t2.1		3976768,3977226,3978429,3978831,3979321,3979948,3980769	3977159,3977901,3978566,3978928,3979439,3980082,3981911	Ferrochelatase, chloroplast precursor (Protoheme ferro-lyase)(Heme synthetase); matches gi:13249285; PMID: 16306143
chr7	3987618	3995009	3988133	3993683	+	Cre07.g339850.t1.1	Cre07.g339850.t1.1		3987618,3988131,3988390,3988697,3989982,3990177,3990480,3990948,3991675,3991921,3992101,3992326,3992525,3992794,3993029,3993195,3993401,3993569	3987997,3988184,3988506,3988863,3990055,3990331,3990779,3991563,3991765,3991951,3992223,3992427,3992685,3992878,3993053,3993262,3993451,3995009	
chr7	3987618	3988982	3988133	3988946	+	Cre07.g339850.t2.1	Cre07.g339850.t2.1		3987618,3988131,3988390,3988697	3987997,3988184,3988506,3988982	
chr7	3989022	3989627	3989171	3989548	-	Cre07.g339876.t1.1	Cre07.g339876.t1.1		3989369,3989022	3989627,3989289	
chr7	4001558	4009532	4001669	4006758	+	MAPKKK5	Cre07.g339900.t1.1		4001558,4002099,4002381,4002756,4003079,4003238,4003532,4003960,4004667,4004894,4005126,4005391,4005587,4005849,4006065,4006239,4006434,4006620	4001954,4002152,4002497,4002922,4003149,4003395,4003828,4004548,4004757,4004924,4005251,4005492,4005747,4005933,4006089,4006306,4006484,4009532	MAPKKK5; Mitogen Activated Protein Kinase Kinase Kinase 5; MAP3K5
chr7	4009540	4010465	4010012	4010385	-	Cre07.g339926.t1.1	Cre07.g339926.t1.1		4009540	4010465	
chr7	4011446	4014307	4011551	4012709	+	Cre07.g339950.t1.1	Cre07.g339950.t1.1		4011446,4012184,4012437	4011900,4012234,4014307	
chr7	4011446	4014307	4011551	4012709	+	Cre07.g339950.t2.1	Cre07.g339950.t2.1		4011446,4012184,4012440	4011900,4012234,4014307	
chr7	4015364	4022075	4017894	4021522	-	Cre07.g340000.t1.1	Cre07.g340000.t1.1		4021236,4020912,4020399,4020027,4018229,4015364	4022075,4021026,4020619,4020148,4019869,4018026	
chr7	4022229	4027851	4022313	4027134	+	Cre07.g340050.t1.1	Cre07.g340050.t1.1		4022229,4022537,4022677,4023292,4023906,4024845,4025687,4026864	4022445,4022602,4023017,4023439,4024016,4025288,4026571,4027851	
chr7	4028000	4033245	4028737	4033012	-	MOT13	Cre07.g340100.t1.2		4032872,4032670,4032305,4031978,4031778,4031428,4031080,4028000	4033245,4032724,4032375,4032051,4031822,4031591,4031187,4030852	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr7	4033364	4036074	4033409	4035877	+	Cre07.g340150.t2.1	Cre07.g340150.t2.1		4033364,4034152,4034418,4034774,4035318,4035742	4033796,4034220,4034529,4034994,4035431,4036074	
chr7	4033364	4036210	4033559	4035877	+	Cre07.g340150.t3.1	Cre07.g340150.t3.1		4033364,4034152,4034418,4034774,4035318,4035742	4033796,4034220,4034529,4034994,4035431,4036210	
chr7	4033246	4036074	4033559	4035877	+	Cre07.g340150.t1.2	Cre07.g340150.t1.2		4033246,4034152,4034418,4034774,4035318,4035742	4033796,4034220,4034529,4034994,4035431,4036074	
chr7	4038143	4040755	4039065	4040525	-	PGRL1	Cre07.g340200.t1.1		4039580,4039325,4038143	4040755,4039345,4039101	thylakoid transmembrane protein involved in cyclic electron flow
chr7	4040904	4048395	4042612	4048280	-	Cre07.g340250.t1.1	Cre07.g340250.t1.1		4047974,4047731,4047505,4046929,4046499,4046018,4045599,4044853,4044625,4044484,4044242,4043977,4043713,4043511,4043384,4043102,4042926,4040904	4048395,4047784,4047621,4047098,4046569,4046172,4045895,4045471,4044715,4044514,4044373,4044078,4043873,4043595,4043408,4043169,4042976,4042837	Serine/Threonine Protein Kinase Homolog 8, putative
chr7	4049753	4051655	4049912	4051194	-	Cre07.g340300.t1.2	Cre07.g340300.t1.2		4051434,4051176,4051055,4050847,4050730,4050489,4050234,4050031,4049753	4051655,4051301,4051085,4050855,4050776,4050590,4050394,4050126,4049912	
chr7	4051848	4057735	4051967	4057232	+	ASA1	Cre07.g340350.t1.1		4051848,4052196,4052357,4052549,4052810,4053666,4054319,4054688,4054997,4055369,4055647,4055980,4056521,4056920,4057175	4052000,4052282,4052467,4052695,4052875,4053797,4054477,4054804,4055184,4055444,4055821,4056086,4056682,4057030,4057735	Mitochondrial ATP synthase associated protein 1; ATP synthase associated protein 1 (P60 or MASAP) (CAD29654); part of peripheral stalk involed in dimerization; unknown evolutionary origin [PMID: 11744727, PMID: 15710684]
chr7	4057796	4063598	4058108	4063105	+	RSP17	Cre07.g340400.t1.2		4057796,4058388,4058598,4058969,4059323,4059693,4060123,4061678,4062129,4062446,4062891	4058195,4058462,4058738,4059106,4059469,4059830,4061469,4061838,4062285,4062621,4063598	A subunit in the radial spoke stalk; containing a coiled coil typical of filamentous polypeptides [PMID: 16507594; GI:83284727
chr7	4064926	4083117	4065032	4081855	+	PKHD1	Cre07.g340450.t1.1		4064926,4065224,4065424,4065889,4066504,4070693,4070977,4073470,4074108,4075892,4077458,4077914	4065145,4065332,4065538,4066169,4070515,4070832,4073310,4073951,4075724,4077289,4077774,4083117	
chr7	4083120	4088185	4083466	4088099	-	Cre07.g340550.t1.1	Cre07.g340550.t1.1		4087782,4087066,4086272,4085907,4083120	4088185,4087662,4086874,4086119,4085717	
chr7	4088339	4092301	4088546	4090999	+	MCP21	Cre07.g340600.t1.1		4088339,4089015,4089998,4090470,4090879	4088774,4089569,4090258,4090604,4092301	
chr7	4092450	4094794	4093064	4094742	-	CGL149	Cre07.g340650.t1.2		4094698,4094573,4094276,4093851,4092450	4094794,4094625,4094433,4093916,4093337	
chr7	4094976	4098787	4095222	4097877	+	Cre07.g340700.t1.1	Cre07.g340700.t1.1		4094976,4095655,4096006,4096488,4096908,4097429	4095336,4095816,4096112,4096650,4097101,4098787	
chr7	4094976	4098787	4095222	4097106	+	Cre07.g340700.t2.1	Cre07.g340700.t2.1		4094976,4095655,4096006,4096488,4096908	4095336,4095816,4096112,4096650,4098787	
chr7	4098856	4102765	4099635	4102568	-	EXN11	Cre07.g340750.t1.2		4102448,4101849,4101221,4100817,4100023,4098856	4102765,4101950,4101373,4100912,4100085,4099770	Exonuclease, ribonuclease H fold
chr7	4414119	4420514	4414549	4420427	-	CYP743A2	Cre07.g340850.t1.2		4420361,4420187,4419852,4419456,4419101,4418263,4417851,4417498,4416985,4416776,4416536,4416212,4415799,4415517,4415141,4414119	4420514,4420241,4419955,4419512,4419192,4418562,4418018,4417594,4417314,4416860,4416584,4416332,4415915,4415618,4415203,4414675	Cytochrome P450-like protein. Cytochrome P450s are involved in the oxidative degradation of various compounds. Particularly well known for their role in the degradation of environmental toxins and mutagens. Structure is mostly alpha, and binds a heme cofactor. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan.
chr7	4408375	4413261	4408408	4412724	+	Cre07.g340900.t1.2	Cre07.g340900.t1.2		4408375,4409542,4410508,4410812,4411777,4412204,4412724	4408763,4409745,4410539,4410919,4411858,4412365,4413261	
chr7	4400569	4408274	4401029	4408133	-	AXL4	Cre07.g340950.t1.1		4408035,4407707,4406695,4406292,4406012,4405625,4405430,4405142,4404865,4404314,4403964,4403517,4403324,4402976,4402610,4402379,4401796,4401396,4400569	4408274,4407818,4407573,4406518,4406069,4405727,4405476,4405239,4404977,4404447,4404080,4403672,4403359,4403080,4402740,4402475,4401930,4401533,4401152	GT77 family
chr7	4389137	4400464	4389324	4400342	-	Cre07.g341000.t1.1	Cre07.g341000.t1.1		4400303,4396771,4396361,4394408,4393182,4391746,4391622,4389137	4400464,4400192,4396475,4396016,4394206,4391946,4391667,4391336	
chr7	4387385	4388926	4387621	4388177	+	Cre07.g341050.t1.2	Cre07.g341050.t1.2		4387385,4388177	4387944,4388926	
chr7	4385145	4387292	4385414	4386450	+	Cre07.g341100.t1.2	Cre07.g341100.t1.2		4385145,4385602,4386255	4385465,4385838,4387292	
chr7	4385145	4387292	4385414	4386243	+	Cre07.g341100.t2.1	Cre07.g341100.t2.1		4385145,4385602,4386111	4385465,4385838,4387292	
chr7	4363454	4374364	4363640	4374255	-	Cre07.g341150.t1.1	Cre07.g341150.t1.1		4374173,4370418,4369933,4368009,4366762,4365980,4363454	4374364,4374042,4370047,4369602,4367786,4366304,4365691	
chr7	4374439	4375684	4374719	4375653	-	Cre07.g341153.t1.1	Cre07.g341153.t1.1		4375611,4374439	4375684,4374842	
chr7	4378659	4382054	4378879	4381756	-	Cre07.g341154.t1.1	Cre07.g341154.t1.1		4381672,4380669,4380322,4380076,4379559,4378659	4382054,4380750,4380522,4380149,4379641,4378879	
chr7	4338571	4345830	4338805	4345327	+	Cre07.g341250.t1.2	Cre07.g341250.t1.2		4338571,4339286,4339778,4340073,4340447,4340725,4341437,4342686,4344331	4339087,4339612,4339861,4340183,4340546,4341237,4342475,4344036,4345830	
chr7	4346113	4353340	4346909	4353087	-	Cre07.g341251.t1.1	Cre07.g341251.t1.1		4353316,4352973,4352619,4352276,4352018,4351464,4350755,4349509,4349192,4348973,4348561,4348318,4348091,4347779,4347564,4347212,4346113	4353340,4353097,4352700,4352473,4352091,4351698,4351123,4350538,4349315,4348992,4348732,4348392,4348147,4347862,4347602,4347418,4346975	
chr7	4332395	4337570	4332784	4336948	-	XAP5	Cre07.g341300.t1.2		4336783,4336302,4335835,4335606,4335172,4334709,4334213,4333850,4333567,4333253,4332395	4337570,4336387,4335916,4335671,4335413,4334834,4334336,4333910,4333661,4333312,4332832	
chr7	4320385	4332340	4321356	4331877	-	Cre07.g341350.t1.2	Cre07.g341350.t1.2		4330890,4330463,4330141,4329713,4329096,4328171,4327783,4327315,4326917,4326520,4326007,4324536,4324150,4323724,4320385	4332340,4330694,4330214,4329802,4329251,4328851,4327838,4327485,4327045,4326621,4326160,4324619,4324239,4323792,4323477	Putative transient receptor potential (TRP) channel. Homology to mammalian TRPV channels.
chr7	4282055	4284270	4283194	4284131	-	Cre07.g341550.t1.2	Cre07.g341550.t1.2		4283758,4282055	4284270,4283469	
chr7	4286051	4287344	4286387	4287326	+	Cre07.g341551.t1.1	Cre07.g341551.t1.1		4286051,4286469,4286766	4286396,4286703,4287344	
chr7	4288391	4291025	4288920	4290970	+	Cre07.g341552.t1.1	Cre07.g341552.t1.1		4288391,4289362	4289220,4291025	
chr7	4292190	4299082	4292198	4298485	+	Cre07.g341553.t1.1	Cre07.g341553.t1.1		4292190,4296245,4296416,4297014,4298435	4296056,4296266,4296943,4298351,4299082	
chr7	4299161	4303452	4299251	4302334	+	Cre07.g341554.t1.1	Cre07.g341554.t1.1		4299161,4301123,4301632	4299273,4301550,4303452	
chr7	4302560	4313409	4303258	4312056	+	Cre07.g341555.t1.1	Cre07.g341555.t1.1		4302560,4303762,4304635,4309170,4309601,4310580	4303279,4304316,4308981,4309191,4309977,4313409	
chr7	4316547	4318030	4317417	4317631	-	Cre07.g341556.t1.1	Cre07.g341556.t1.1		4316547	4318030	
chr7	4277481	4282052	4277529	4280897	+	CGE1	Cre07.g341600.t1.2		4277481,4277756,4278185,4278884,4279574,4279967,4280553,4280852	4277661,4277857,4278343,4278979,4279621,4280110,4280609,4282052	Chloroplast GrpE homolog, nucleotide release factor, co-chaperone of HSP70B, chloroplast-targeted; first intron is alternatively spliced [PMID: 11752390]: isoform CGE1b is more prominent at higher temperatures (>30 C) than CGE1a (which lacks a VQ dipeptide at position 4 of mature protein and prevails at lower temperatures); the protein is mostly localized to chloroplast stroma; participates with HSP70B in assembly/disassembly of VIPP1 oligomers [PMID: 15635096].
chr7	4277481	4282052	4277529	4280897	+	CGE1	Cre07.g341600.t2.1		4277481,4277756,4278185,4278884,4279574,4279967,4280553,4280852	4277655,4277857,4278343,4278979,4279621,4280110,4280609,4282052	Chloroplast GrpE homolog, nucleotide release factor, co-chaperone of HSP70B, chloroplast-targeted; first intron is alternatively spliced [PMID: 11752390]: isoform CGE1b is more prominent at higher temperatures (>30 C) than CGE1a (which lacks a VQ dipeptide at position 4 of mature protein and prevails at lower temperatures); the protein is mostly localized to chloroplast stroma; participates with HSP70B in assembly/disassembly of VIPP1 oligomers [PMID: 15635096].
chr7	4274501	4277209	4275000	4276829	+	Cre07.g341650.t1.2	Cre07.g341650.t1.2		4274501,4274873,4275647,4276285,4276583	4274743,4275222,4275827,4276346,4277209	
chr7	4266085	4274400	4266916	4274139	-	Cre07.g341700.t1.1	Cre07.g341700.t1.1		4273807,4273430,4273131,4271645,4271147,4270698,4270458,4270092,4269622,4269246,4268908,4268627,4268300,4267684,4267227,4266085	4274400,4273606,4273258,4272980,4271513,4270763,4270541,4270247,4269819,4269373,4268983,4268676,4268483,4268123,4267549,4267047	
chr7	4263381	4266069	4263683	4265033	+	Cre07.g341750.t1.2	Cre07.g341750.t1.2		4263381,4264699	4264498,4266069	
chr7	4260861	4263302	4260977	4262487	+	CGL107	Cre07.g341800.t1.2		4260861,4261304,4261578,4262076	4261192,4261392,4261699,4263302	Conserved in the Green Lineage
chr7	4249900	4260716	4250107	4259876	+	INFB	Cre07.g341850.t1.2		4249900,4251934,4252217,4252529,4253521,4253927,4254274,4254962,4255425,4255962,4256197,4256616,4256963,4257422,4257954,4258491,4258931,4259280,4259657	4251061,4251945,4252315,4252576,4253607,4254019,4254408,4255075,4255505,4256036,4256301,4256735,4257082,4257526,4258064,4258655,4259068,4259399,4260716	May contain additional coding sequence in intronic N-island PMID: 27175017
chr7	4241391	4249592	4241431	4248364	+	Cre07.g341900.t1.1	Cre07.g341900.t1.1		4241391,4243264,4243709,4245462,4246346,4247443	4242872,4243334,4245184,4246006,4246505,4249592	
chr7	4241391	4249592	4241431	4248364	+	Cre07.g341900.t2.1	Cre07.g341900.t2.1		4241391,4243267,4243709,4245462,4246346,4247443	4242872,4243334,4245184,4246006,4246505,4249592	
chr7	4234191	4241342	4234263	4240950	+	Cre07.g341925.t1.2	Cre07.g341925.t1.2		4234191,4235694,4236193,4238345,4239432,4239891	4235596,4235767,4237869,4239162,4239636,4241342	
chr7	4226461	4234125	4226513	4233632	+	Cre07.g341950.t1.1	Cre07.g341950.t1.1		4226461,4228048,4228427,4230633,4231674,4232459	4227816,4228130,4230286,4231378,4231893,4234125	
chr7	4420644	4424086	4420887	4423457	+	Cre07.g341952.t1.1	Cre07.g341952.t1.1		4420644,4421256,4421751,4422944,4423346	4420988,4421418,4421926,4423070,4424086	
chr7	4218351	4226407	4218451	4225529	+	Cre07.g342000.t1.1	Cre07.g342000.t1.1		4218351,4219092,4219507,4219738,4220219,4220563,4220907,4221130,4221457,4221679,4222421,4222937,4223481,4223944,4224256,4224694,4225193	4218705,4219227,4219547,4219792,4220316,4220721,4220957,4221190,4221515,4222002,4222710,4223227,4223548,4224003,4224335,4224859,4226407	
chr7	4210538	4214080	4211729	4213847	-	VTI3	Cre07.g342050.t1.2		4213638,4213347,4212968,4212346,4210538	4214080,4213537,4213080,4212476,4212036	Expressed Protein. Similar to NPSN Qb-SNAREs, involved in Endosomal/Cell Plate trafficking.
chr7	4214475	4217680	4214922	4217291	-	Cre07.g342052.t1.1	Cre07.g342052.t1.1		4217233,4216119,4215765,4215252,4214475	4217680,4216558,4215948,4215283,4215027	
chr7	4206183	4210490	4206815	4210142	-	Cre07.g342100.t1.2	Cre07.g342100.t1.2		4209596,4209099,4208503,4208051,4207437,4206183	4210490,4209183,4208609,4208116,4207577,4207010	Expressed Protein. Similar to NPSN Qb-SNAREs, involved in Endosomal/Cell Plate trafficking.
chr7	4202521	4206092	4202848	4204534	+	HEMA1	Cre07.g342150.t1.2		4202521,4203182	4203065,4206092	glutamyl-tRNA reductase precursor (GluTR) (HEMA) (HMA) [AAG41962; PMID: 16158240; PMID: 16126849; PMID: 1451806; PMID: 2303495]; predicted chloroplast targeting sequence amino acids 1-42 by ChloroP
chr7	4195691	4201847	4195781	4200964	+	IFT70	Cre07.g342200.t1.2		4195691,4196023,4196173,4196554,4197050,4197590,4197972,4198414,4198942,4199476,4199878,4200315,4200741	4195904,4196105,4196245,4196649,4197187,4197729,4198195,4198598,4199136,4199630,4199977,4200523,4201847	Flagellar Associated coiled-coil protein; TPR protein found in the flagellar proteome as FAP259 [PMID: 15998802]; similar to dyf-1 (C. elegans); component of core of IFT-B particle; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr7	4193444	4195121	4193562	4194509	+	PFD2	Cre07.g342250.t1.2		4193444,4193852,4194401	4193676,4194067,4195121	alpha-type subunit of molecular chaperone Prefoldin (PMID: 11599560); KE2 Family protein; has two coiled-coil domains separated by beta-sheet; stabilizes polypeptide chains prior to folding within CCT chaperonin, in particular tubulin; found in flagellar proteome
chr7	4186049	4192012	4186630	4191061	+	PDE14	Cre07.g342350.t1.2		4186049,4186465,4186730,4186898,4187128,4187369,4187706,4188301,4188840,4189191,4189783,4190093,4190487,4190899	4186297,4186642,4186827,4187030,4187286,4187513,4188012,4188598,4188983,4189517,4189962,4190311,4190660,4192012	cAMP-specific phosphodiesterase similar to phosphodiesterase 4D of Homo sapiens AAA03592.1
chr7	4192022	4193320	4192909	4193087	-	Cre07.g342352.t1.1	Cre07.g342352.t1.1		4192022	4193320	
chr7	4182446	4183960	4182814	4183019	-	Cre07.g342400.t1.2	Cre07.g342400.t1.2		4183399,4182446	4183960,4183041	
chr7	4184381	4185972	4184696	4185144	+	Cre07.g342402.t1.1	Cre07.g342402.t1.1		4184381,4184894	4184779,4185972	
chr7	4157456	4182132	4157575	4181481	+	Cre07.g342450.t1.1	Cre07.g342450.t1.1		4157456,4157774,4157946,4158284,4158649,4159083,4159742,4160515,4161008,4161325,4161975,4162679,4163113,4163621,4163869,4164183,4164608,4164894,4165487,4167071,4167759,4168358,4168801,4169354,4169903,4170247,4170771,4171231,4172062,4172466,4172939,4173225,4174023,4174477,4175141,4177063,4177606,4177997,4178587	4157671,4157849,4158106,4158409,4158879,4159415,4160287,4160856,4161136,4161784,4162112,4162940,4163278,4163683,4163913,4164281,4164700,4165305,4166858,4167601,4168140,4168515,4169071,4169485,4170028,4170477,4170854,4171812,4172169,4172575,4172972,4173620,4174088,4174794,4175301,4177304,4177823,4178354,4182132	Putative splicing endonuclease positive effector, related to SEN1
chr7	4149596	4152647	4149687	4152291	+	Cre07.g342550.t1.1	Cre07.g342550.t1.1		4149596,4150260,4150932,4151904	4149967,4150383,4151433,4152647	
chr7	4152696	4153817	4152853	4153728	+	Cre07.g342551.t1.1	Cre07.g342551.t1.1		4152696,4153242,4153698	4153018,4153454,4153817	
chr7	4153876	4157220	4153957	4156957	+	Cre07.g342552.t1.1	Cre07.g342552.t1.1		4153876,4154128	4153966,4157220	
chr7	4146810	4149495	4147645	4149390	-	Cre07.g342600.t1.1	Cre07.g342600.t1.1		4149338,4149107,4148668,4146810	4149495,4149263,4148896,4148401	
chr7	4141260	4146135	4142466	4145752	-	Cre07.g342650.t1.1	Cre07.g342650.t1.1		4144957,4141260	4146135,4144839	
chr7	4133840	4141005	4134272	4140893	-	Cre07.g342700.t1.1	Cre07.g342700.t1.1		4140817,4140222,4139809,4138809,4138462,4138178,4137800,4137468,4137021,4136846,4136262,4136020,4135678,4135453,4135096,4133840	4141005,4140251,4140008,4138928,4138738,4138318,4138020,4137659,4137306,4136887,4136713,4136124,4135856,4135598,4135357,4134903	
chr7	4133840	4140185	4134272	4138254	-	Cre07.g342700.t2.1	Cre07.g342700.t2.1		4139809,4138809,4138178,4137800,4137468,4137021,4136846,4136262,4136020,4135678,4135453,4135096,4133840	4140185,4138928,4138318,4138020,4137659,4137306,4136887,4136713,4136124,4135856,4135598,4135357,4134903	
chr7	4129520	4133775	4129762	4133628	-	Cre07.g342750.t1.1	Cre07.g342750.t1.1		4133578,4133397,4133082,4132780,4132574,4132196,4131675,4131254,4130926,4130554,4130212,4129520	4133775,4133484,4133240,4132914,4132618,4132326,4131714,4131356,4131071,4130729,4130356,4129960	
chr7	4124606	4129511	4125088	4129058	+	CGL16	Cre07.g342800.t1.1		4124606,4125625,4126067,4126386,4126785,4127142,4127589,4128231,4128992	4125271,4125676,4126170,4126562,4126874,4127236,4127917,4128316,4129511	
chr7	4118019	4124435	4118179	4124191	-	DCC3	Cre07.g342850.t1.2		4123972,4123625,4123134,4121380,4120992,4120716,4120304,4119841,4119139,4118019	4124435,4123699,4123196,4121466,4121207,4120817,4120454,4119992,4119591,4118599	
chr7	4113626	4118007	4113771	4117526	+	Cre07.g342900.t1.1	Cre07.g342900.t1.1		4113626,4113875,4114429,4114766,4115524,4116019,4116247,4117201	4113795,4114159,4114658,4115270,4115624,4116098,4116811,4118007	
chr7	4108136	4113549	4108236	4113451	+	Cre07.g342920.t1.2	Cre07.g342920.t1.2		4108136,4108457,4109053,4109358,4109627,4110307,4110643,4111153,4111515,4111826,4112301,4112881,4113271	4108319,4108556,4109102,4109430,4109817,4110397,4110786,4111243,4111610,4111920,4112421,4113065,4113549	
chr7	4102866	4108081	4103001	4107537	+	Cre07.g342950.t1.2	Cre07.g342950.t1.2		4102866,4103304,4104036,4104365,4105368,4105968,4106326,4106707	4103048,4103660,4104102,4104952,4105724,4106069,4106476,4108081	
chr7	4424365	4425551	4424913	4425187	+	Cre07.g343050.t1.2	Cre07.g343050.t1.2		4424365	4425551	
chr7	4425559	4427264	4425923	4426891	-	Cre07.g343101.t1.1	Cre07.g343101.t1.1		4427176,4426794,4426431,4425559	4427264,4426895,4426534,4425998	
chr7	4429597	4439124	4430106	4438825	-	Cre07.g343150.t1.1	Cre07.g343150.t1.1		4438777,4438538,4438289,4435842,4434936,4433924,4433358,4429597	4439124,4438621,4438340,4438204,4435664,4434789,4433769,4433232	
chr7	4439225	4451026	4439585	4450347	+	Cre07.g343200.t1.2	Cre07.g343200.t1.2		4439225,4439783,4439948,4440182,4440578,4440890,4441517,4441863,4442361,4442779,4443321,4443697,4444030,4444624,4445660,4445868,4446442,4447200,4447593,4448569,4448970	4439623,4439840,4440002,4440242,4440671,4441216,4441657,4442076,4442482,4443048,4443417,4443832,4444200,4445314,4445731,4446197,4446858,4447373,4448239,4448779,4451026	
chr7	4451049	4455624	4451859	4455469	-	Cre07.g343250.t1.1	Cre07.g343250.t1.1		4454425,4451049	4455624,4454277	
chr7	4456352	4462004	4457245	4461680	-	Cre07.g343300.t1.1	Cre07.g343300.t1.1		4460636,4457473,4456352	4462004,4460492,4457245	
chr7	4462635	4480372	4462801	4479668	+	Cre07.g343333.t1.1	Cre07.g343333.t1.1		4462635,4464135,4465433,4466945,4467199,4467501,4467993,4468324,4468720,4468997,4469934,4470229,4470815,4471257,4471638,4472173,4472515,4472775,4473319,4473810,4474183,4474747,4475343,4475905,4476265,4476653,4476933,4477419,4478129,4478565,4478942,4479157,4479499	4463850,4465126,4466805,4466987,4467260,4467656,4468066,4468452,4468783,4469704,4470022,4470307,4470849,4471305,4471745,4472241,4472580,4472843,4473396,4473890,4474251,4474884,4475720,4475964,4476423,4476700,4477286,4477844,4478265,4478690,4479056,4479224,4480372	
chr7	4462635	4480372	4462801	4479668	+	Cre07.g343333.t2.1	Cre07.g343333.t2.1		4462635,4464135,4465433,4466945,4467199,4467501,4467993,4468324,4468720,4468997,4469934,4470229,4470815,4471257,4471638,4472173,4472515,4472775,4473319,4473810,4474183,4474747,4475343,4475905,4476265,4476653,4476936,4477419,4478129,4478565,4478942,4479157,4479499	4463850,4465126,4466805,4466987,4467260,4467656,4468066,4468452,4468783,4469704,4470022,4470307,4470849,4471305,4471745,4472241,4472580,4472843,4473396,4473890,4474251,4474884,4475720,4475964,4476423,4476700,4477286,4477844,4478265,4478690,4479056,4479224,4480372	
chr7	4480535	4493004	4481555	4492807	-	Cre07.g343400.t1.1	Cre07.g343400.t1.1		4492757,4492514,4492279,4491966,4491497,4490695,4490137,4489666,4489183,4488755,4487746,4487513,4486745,4485779,4485425,4485041,4484401,4483959,4483411,4483073,4480535	4493004,4492571,4492333,4492026,4491587,4490907,4490262,4489806,4489366,4488897,4488016,4487597,4486954,4486284,4485591,4485112,4484757,4484110,4483573,4483174,4482761	
chr7	4493225	4496996	4493423	4496530	+	OGD4	Cre07.g343433.t1.1		4493225,4494004,4495332,4495731,4496115,4496425	4493553,4494110,4495413,4495819,4496306,4496996	EC 2.3.1.61; 2-oxoglutarate dehydrogenase, E2 component
chr7	4498585	4500946	4498984	4500832	+	Cre07.g343466.t1.1	Cre07.g343466.t1.1		4498585,4499959	4499776,4500946	
chr7	4500995	4504536	4501342	4503083	+	Cre07.g343500.t1.1	Cre07.g343500.t1.1		4500995,4501625	4501351,4504536	
chr7	4505075	4511486	4505773	4509289	+	Cre07.g343534.t1.1	Cre07.g343534.t1.1		4505075,4506143,4506886	4506033,4506698,4511486	
chr7	4512535	4519066	4512701	4516219	+	Cre07.g343567.t1.1	Cre07.g343567.t1.1		4512535,4513816,4515430	4513628,4515288,4519066	
chr7	4524575	4529986	4525163	4528383	+	Cre07.g343600.t1.1	Cre07.g343600.t1.1		4524575,4525237,4525980	4525183,4525792,4529986	
chr7	4530783	4532024	4531502	4531695	+	Cre07.g343626.t1.1	Cre07.g343626.t1.1		4530783	4532024	
chr7	4532073	4536794	4532162	4535794	+	Cre07.g343650.t1.1	Cre07.g343650.t1.1		4532073,4533397	4533215,4536794	
chr7	4536828	4542242	4537627	4542034	-	OGD2	Cre07.g343700.t1.2		4541968,4541864,4541769,4541507,4541289,4540925,4540432,4540203,4539851,4539466,4539062,4538825,4538282,4537944,4536828	4542242,4541906,4541799,4541688,4541338,4541017,4540563,4540270,4539983,4539543,4539151,4538884,4538473,4538009,4537696	dihydrolipoamide succinyltransferase (EC 2.3.1.61); 2-oxoglutarate dehydrogenase, E2 component; probable mitochondrial targeting
chr7	4542317	4547592	4543277	4547492	-	Cre07.g343750.t1.2	Cre07.g343750.t1.2		4545100,4542317	4547592,4544905	
chr7	4548103	4548834	4548361	4548772	+	Cre07.g343789.t1.2	Cre07.g343789.t1.2		4548103,4548451,4548656	4548382,4548517,4548834	
chr7	4548837	4550899	4549732	4550753	-	Cre07.g343800.t1.2	Cre07.g343800.t1.2		4550734,4550161,4548837	4550899,4550314,4549946	
chr7	4551023	4556874	4551107	4556161	+	Cre07.g343850.t1.2	Cre07.g343850.t1.2		4551023,4551242,4551416,4551708,4552048,4552759,4553070,4553358,4553744,4554231,4554715,4555387,4555999	4551149,4551292,4551513,4551804,4552275,4552824,4553165,4553468,4553994,4554345,4554804,4555488,4556874	
chr7	4556877	4561562	4557179	4561444	-	Cre07.g343900.t1.2	Cre07.g343900.t1.2		4560685,4560059,4559500,4559107,4558864,4558476,4557966,4556877	4561562,4560133,4559766,4559169,4558969,4558636,4558049,4557740	
chr7	4562173	4573893	4562323	4572244	+	EBM6	Cre07.g343933.t1.1		4562173,4563664,4564559,4565009,4565454,4566052,4566722,4567075,4567470,4567952,4568365,4568722,4568955,4569546,4570009,4570427,4572099	4563436,4564275,4564605,4565150,4565534,4566181,4566771,4567189,4567564,4568030,4568435,4568804,4569041,4569582,4570109,4571683,4573893	
chr7	4562173	4573893	4562323	4572244	+	EBM6	Cre07.g343933.t2.1		4562173,4564213,4564559,4565009,4565454,4566052,4566722,4567075,4567470,4567952,4568365,4568722,4568955,4569546,4570009,4570427,4572099	4563436,4564275,4564605,4565150,4565534,4566181,4566771,4567189,4567564,4568030,4568435,4568804,4569041,4569582,4570109,4571683,4573893	
chr7	4573973	4578589	4574696	4577440	+	Cre07.g344000.t1.1	Cre07.g344000.t1.1		4573973,4574629,4575648,4576031,4576436,4577010,4577287	4574494,4575330,4575717,4576243,4576730,4577066,4578589	
chr7	4578912	4590992	4579526	4590871	-	Cre07.g344050.t1.1	Cre07.g344050.t1.1		4590730,4590394,4589809,4589365,4588913,4588454,4588062,4587581,4587032,4586576,4586135,4585751,4584641,4584277,4583645,4583317,4582869,4582396,4581704,4578912	4590992,4590438,4590123,4589460,4588987,4588554,4588176,4587633,4587239,4586635,4586303,4585880,4584822,4584440,4583836,4583406,4583036,4582674,4581829,4581179	
chr7	4591047	4605722	4591562	4605521	-	Cre07.g344100.t1.1	Cre07.g344100.t1.1		4604957,4604479,4604034,4603518,4603053,4602693,4602006,4601612,4601188,4600515,4599699,4599147,4597550,4597292,4596809,4596215,4595851,4595327,4594908,4594591,4594016,4593141,4592459,4592124,4591047	4605722,4604705,4604143,4603634,4603243,4602800,4602427,4601692,4601262,4600569,4600123,4599216,4597680,4597403,4596904,4596356,4596014,4595456,4595011,4594760,4594242,4593874,4592588,4592221,4591841	
chr7	4591047	4605722	4591562	4605521	-	Cre07.g344100.t2.1	Cre07.g344100.t2.1		4604957,4604479,4604034,4603518,4603053,4602693,4602006,4601612,4600515,4599699,4599147,4597550,4597292,4596809,4596215,4595851,4595327,4594908,4594591,4594016,4593141,4592459,4592124,4591047	4605722,4604705,4604143,4603634,4603243,4602800,4602427,4601692,4600569,4600123,4599216,4597680,4597403,4596904,4596356,4596014,4595456,4595011,4594760,4594242,4593874,4592588,4592221,4591841	
chr7	4591047	4605722	4591562	4605521	-	Cre07.g344100.t3.1	Cre07.g344100.t3.1		4604957,4604479,4604034,4603518,4603053,4602693,4602006,4601612,4600515,4599699,4599147,4597550,4597292,4596809,4596215,4595851,4595327,4594908,4594591,4594016,4593141,4592459,4592124,4591047	4605722,4604705,4604143,4603634,4603243,4602800,4602427,4601692,4600569,4600123,4599216,4597680,4597403,4596904,4596356,4596014,4595456,4595011,4594757,4594242,4593874,4592588,4592221,4591841	
chr7	4606155	4611398	4606230	4610238	+	Cre07.g344150.t1.1	Cre07.g344150.t1.1		4606155,4606395,4606663,4606863,4607177,4607470,4607878,4608651,4608981,4609356,4609690,4610119	4606295,4606492,4606737,4606943,4607217,4607577,4607965,4608725,4609069,4609451,4609801,4611398	
chr7	4611417	4613882	4612422	4613692	-	Cre07.g344172.t1.2	Cre07.g344172.t1.2		4613132,4612837,4611417	4613882,4612877,4612571	
chr7	4614461	4617152	4615294	4616971	-	Cre07.g344186.t1.1	Cre07.g344186.t1.1		4616397,4616155,4615682,4614461	4617152,4616195,4615893,4615451	
chr7	4618123	4624734	4618430	4624133	+	Cre07.g344200.t1.2	Cre07.g344200.t1.2		4618123,4618991,4619403,4619827,4620337,4621148,4622090,4622481,4623264,4623454,4623779	4618544,4619073,4619535,4619926,4620862,4621579,4622279,4622657,4623336,4623593,4624734	
chr7	4624937	4627252	4625782	4627032	-	CSG9	Cre07.g344250.t1.1		4626590,4624937	4627252,4626309	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	4628913	4633524	4629810	4631342	+	Cre07.g344260.t1.2	Cre07.g344260.t1.2		4628913,4629665,4630230,4630681,4631019	4629309,4629994,4630271,4630728,4633524	
chr7	4634484	4641172	4636284	4640947	-	Cre07.g344300.t1.2	Cre07.g344300.t1.2		4640886,4640479,4639804,4639477,4638836,4638070,4637338,4636845,4634484	4641172,4640573,4639902,4639541,4638914,4638372,4637631,4636904,4636455	
chr7	4641301	4644824	4641413	4644151	+	TPP1	Cre07.g344350.t1.2		4641301,4641574,4641853,4642413,4643510,4643749,4644086	4641427,4641632,4642216,4642548,4643614,4643887,4644824	serine peptidase (S26 family); processes thylakoid-imported proteins during translocation, removing signal peptide; homologous to bacterial type I signal peptidases
chr7	4644873	4648644	4645011	4647715	+	Cre07.g344400.t1.2	Cre07.g344400.t1.2		4644873,4645229,4645516,4646343,4646839,4647394	4645047,4645283,4646036,4646585,4647192,4648644	
chr7	4648693	4654528	4649135	4653778	+	Cre07.g344450.t1.2	Cre07.g344450.t1.2		4648693,4648999,4650059,4652276,4652572,4653051,4653386	4648882,4649836,4652148,4652431,4652919,4653209,4654528	
chr7	4654559	4659062	4654870	4658860	-	Cre07.g344500.t1.2	Cre07.g344500.t1.2		4658711,4658321,4658025,4657594,4657193,4656994,4656744,4656515,4656347,4656173,4655919,4655494,4655235,4654559	4659062,4658456,4658093,4657688,4657356,4657030,4656813,4656586,4656408,4656221,4655980,4655575,4655311,4655048	
chr7	4659517	4663832	4660547	4663692	-	Cre07.g344550.t1.2	Cre07.g344550.t1.2		4663653,4663432,4662738,4662185,4661090,4659517	4663832,4663489,4663267,4662427,4661443,4660865	
chr7	4663933	4672467	4664021	4671366	+	PGD1	Cre07.g344600.t1.2		4663933,4664364,4664756,4665185,4666004,4666496,4666980,4667560,4668399,4668639,4669227,4669788,4670653,4671209	4664048,4664433,4664809,4665300,4666201,4666591,4667108,4667724,4668450,4668793,4669490,4669975,4670832,4672467	D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); Target-P predicts organelle (mitochondrial) targeting; predict plastid targeting by homology
chr7	4672523	4675424	4672612	4675380	+	Cre07.g344634.t1.1	Cre07.g344634.t1.1		4672523,4673032,4673308,4673925,4674574,4674917	4672914,4673077,4673740,4674349,4674701,4675424	
chr7	4672523	4675424	4672612	4675380	+	Cre07.g344634.t2.1	Cre07.g344634.t2.1		4672523,4673032,4673311,4673925,4674574,4674917	4672914,4673077,4673740,4674349,4674701,4675424	
chr7	4675427	4680202	4676444	4679782	-	Cre07.g344668.t1.1	Cre07.g344668.t1.1		4678711,4678018,4677350,4675427	4680202,4678062,4677786,4677144	
chr7	4680303	4683524	4680355	4683475	+	Cre07.g344702.t1.1	Cre07.g344702.t1.1		4680303,4680635,4681149,4681372,4681700,4682082,4682974	4680379,4680868,4681212,4681436,4681823,4682665,4683524	
chr7	4683573	4688334	4683909	4687353	+	Cre07.g344771.t1.2	Cre07.g344771.t1.2		4683573,4684959	4684749,4688334	
chr7	4689066	4692189	4689096	4691151	+	CSB33	Cre07.g344800.t1.2		4689066,4690802,4691028	4690683,4690912,4692189	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr7	4692422	4698055	4693634	4697943	-	Cre07.g344850.t1.2	Cre07.g344850.t1.2		4697784,4697331,4696925,4696652,4696159,4695860,4695458,4695112,4694775,4694007,4692422	4698055,4697444,4696969,4696699,4696257,4695919,4695544,4695177,4694845,4694594,4693695	Catalytic subunit of the decapping enzyme complex, which removes the 5' cap structure from mRNAs prior to their degradation; member of the Nudix hydrolase family; homologue of S. cerevisiae Dcp2
chr7	4698196	4701305	4698535	4700761	+	Cre07.g344900.t1.2	Cre07.g344900.t1.2		4698196,4698452,4698910,4699110,4699365,4699786,4700101	4698314,4698679,4698957,4699210,4699485,4699911,4701305	
chr7	4698206	4701305	4698535	4700761	+	Cre07.g344900.t2.1	Cre07.g344900.t2.1		4698206,4698910,4699110,4699365,4699786,4700101	4698679,4698957,4699210,4699485,4699911,4701305	
chr7	4701800	4704735	4702994	4704634	-	LHCA9	Cre07.g344950.t1.2		4704495,4704173,4703867,4703362,4701800	4704735,4704227,4704077,4703454,4703138	Encodes a less abundant light-harvesting antenna protein for PS1. The sequence of this gene was deposited in Genbank (AF244524) by Merchan and Fernandez (2002). It is designated as Lhca9 in PMID: 14555480, and Lhca7 in PMID: 14652691, respectively.
chr7	4705410	4711275	4706441	4711146	-	Cre07.g345000.t1.1	Cre07.g345000.t1.1		4710976,4710703,4710320,4708853,4707736,4705410	4711275,4710898,4710489,4710103,4708476,4707249	
chr7	4711330	4715485	4711722	4715186	-	Cre07.g345001.t1.2	Cre07.g345001.t1.2		4714896,4714409,4714007,4712333,4711330	4715485,4714604,4714176,4713838,4712140	
chr7	4715550	4720615	4716014	4720482	-	Cre07.g345031.t1.2	Cre07.g345031.t1.2		4720309,4719847,4719354,4717437,4715550	4720615,4720042,4719526,4718996,4717194	
chr7	4720670	4724655	4721477	4723796	-	Cre07.g345050.t1.2	Cre07.g345050.t1.2		4724122,4723190,4722492,4720670	4724655,4723887,4722691,4722261	
chr7	4725468	4726955	4725947	4726263	-	Cre07.g345100.t1.2	Cre07.g345100.t1.2		4725468	4726955	
chr7	4727200	4730785	4727710	4730699	-	Cre07.g345150.t1.2	Cre07.g345150.t1.2		4730626,4730476,4730206,4729923,4729632,4729182,4727200	4730785,4730552,4730346,4730021,4729722,4729315,4729015	
chr7	4730886	4734361	4731029	4733878	+	Cre07.g345200.t1.1	Cre07.g345200.t1.1		4730886,4731893,4732571,4733115,4733443	4731662,4732397,4732711,4733299,4734361	
chr7	4735830	4740375	4736621	4740124	-	Cre07.g345250.t1.1	Cre07.g345250.t1.1		4739185,4735830	4740375,4739018	
chr7	4740540	4747565	4741953	4747416	-	UAP1	Cre07.g345300.t1.1		4747281,4746863,4746579,4746193,4745486,4745045,4744800,4744549,4743985,4742972,4742524,4742337,4740540	4747565,4746920,4746628,4746255,4745596,4745130,4744884,4744594,4744247,4743235,4742609,4742368,4742165	related to UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) and related to UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) = UDP-glucose pyrophosphorylase (UDPGP) (UGPase)
chr7	4748386	4754618	4748910	4753701	+	Cre07.g345350.t1.1	Cre07.g345350.t1.1		4748386,4748882,4749348,4749936,4750232,4750560,4751119,4751906,4753491	4748777,4748981,4749408,4750009,4750370,4750737,4751559,4753167,4754618	
chr7	4754620	4762135	4754975	4761839	-	FAP70	Cre07.g345400.t1.2		4761734,4761272,4760726,4760194,4759768,4759287,4758927,4758283,4757944,4757611,4757094,4756385,4755787,4755419,4754620	4762135,4761610,4760915,4760431,4759956,4759506,4759106,4758498,4758018,4757784,4757405,4756756,4756089,4755544,4755161	Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]
chr7	4762183	4768185	4763086	4768052	-	Cre07.g345450.t1.1	Cre07.g345450.t1.1		4767078,4764131,4763843,4762183	4768185,4766886,4763931,4763692	
chr7	4762183	4768185	4763086	4768052	-	Cre07.g345450.t2.1	Cre07.g345450.t2.1		4767078,4764131,4763858,4762183	4768185,4766886,4763931,4763692	
chr7	4768250	4771835	4769032	4771712	-	Cre07.g345500.t1.2	Cre07.g345500.t1.2		4771460,4770889,4770254,4769835,4769424,4768250	4771835,4771059,4770357,4769911,4769509,4769170	
chr7	4771996	4774077	4772102	4772955	+	Cre07.g345524.t1.2	Cre07.g345524.t1.2		4771996,4772778	4772174,4774077	
chr7	4774136	4779907	4774446	4778879	+	Cre07.g345550.t1.2	Cre07.g345550.t1.2		4774136,4775024	4774743,4779907	
chr7	4779956	4783927	4780061	4783277	+	Cre07.g345600.t1.1	Cre07.g345600.t1.1		4779956,4781892,4782746	4781636,4782548,4783927	
chr7	4795066	4798061	4795151	4797618	+	Cre07.g345650.t1.2	Cre07.g345650.t1.2		4795066,4795719	4795421,4798061	
chr7	4799076	4802752	4800137	4802624	-	COQ10	Cre07.g345700.t1.2		4802343,4801759,4800884,4799076	4802752,4802103,4801094,4800470	Putative coenzyme Q-binding protein COQ10, mitochondrial precursor; similiar to COQ10_YEAST Coenzyme Q-binding protein COQ10, mitochondrial precursor (gi 74676458)
chr7	4802876	4807320	4803542	4806922	+	Cre07.g345750.t1.1	Cre07.g345750.t1.1		4802876,4803208,4804256,4804719,4805113,4805410,4806060,4806582,4806810	4803087,4803898,4804385,4804958,4805162,4805689,4806233,4806649,4807320	Related to GCN5
chr7	4807481	4810063	4809218	4809913	-	Cre07.g345800.t1.1	Cre07.g345800.t1.1		4809847,4809659,4809473,4807481	4810063,4809742,4809555,4809297	
chr7	4810110	4812405	4810584	4811874	-	Cre07.g345850.t1.2	Cre07.g345850.t1.2		4811755,4811371,4811015,4810110	4812405,4811425,4811158,4810722	
chr7	4812506	4837787	4813116	4837133	+	DCL3	Cre07.g345900.t1.1		4812506,4813411,4814277,4815267,4816181,4816671,4817529,4817845,4818719,4818942,4819481,4819793,4821365,4822306,4822741,4823236,4823552,4824544,4824925,4825386,4825815,4826145,4827535,4827987,4830497,4831270,4831828,4832408,4833113,4835336,4835869,4836287,4836983	4813234,4813523,4814762,4815983,4816261,4817229,4817617,4818078,4818777,4819246,4819596,4820143,4821829,4822394,4822823,4823299,4823928,4824588,4825024,4825506,4825935,4827287,4827781,4830293,4830979,4831333,4832133,4832632,4835089,4835448,4836028,4836637,4837787	involved, with DU16, in processing of pri-miRNA; involved in posttranscriptional gene silencing/RNA interference
chr7	4837790	4842065	4839625	4841222	-	Cre07.g345950.t1.1	Cre07.g345950.t1.1		4841391,4840884,4840001,4837790	4842065,4841232,4840592,4839781	
chr7	4842130	4865785	4844970	4865727	-	Cre07.g346000.t1.2	Cre07.g346000.t1.2		4865599,4865468,4865075,4864416,4862532,4862228,4861759,4861196,4860864,4860295,4859349,4859005,4848071,4847470,4847072,4846611,4846145,4842130	4865785,4865510,4865243,4864611,4863854,4862276,4862001,4861554,4860963,4860363,4859954,4859168,4858858,4847779,4847197,4846757,4846353,4845991	
chr7	4866866	4871395	4867639	4870202	-	CRD1	Cre07.g346050.t1.2		4870631,4870140,4869791,4869401,4869114,4868553,4867974,4866866	4871395,4870408,4869942,4869534,4869259,4868814,4868336,4867744	Copper response defect 1 protein, chloroplast precursor; Produced under copper and/or oxygen deficient conditions [GI:7542488; PMID: 119113; PMID: 181165; PMID: 119113; PMID: 1467313];Mg-protoporphyrin IX monomethyl ester  (oxidative) cyclase, aerobic oxidative cyclase; orthologous to Rubrivax gelatinosus aerobic oxidative cyclase [PMID: 11790744; PMID: 14617630]; Predicted chloroplast transit peptide 1-34; Orthologous to CTH1; CHL27B [PMID: 15849308]
chr7	4866866	4871295	4867639	4870202	-	CRD1	Cre07.g346050.t2.1		4870506,4870140,4869791,4869401,4869114,4868553,4867974,4866866	4871295,4870408,4869942,4869534,4869259,4868814,4868336,4867744	Copper response defect 1 protein, chloroplast precursor; Produced under copper and/or oxygen deficient conditions [GI:7542488; PMID: 119113; PMID: 181165; PMID: 119113; PMID: 1467313];Mg-protoporphyrin IX monomethyl ester  (oxidative) cyclase, aerobic oxidative cyclase; orthologous to Rubrivax gelatinosus aerobic oxidative cyclase [PMID: 11790744; PMID: 14617630]; Predicted chloroplast transit peptide 1-34; Orthologous to CTH1; CHL27B [PMID: 15849308]
chr7	4871467	4875095	4871780	4874797	-	Cre07.g346100.t1.1	Cre07.g346100.t1.1		4874924,4874674,4874089,4873826,4873386,4872912,4872182,4871467	4875095,4874809,4874433,4873921,4873493,4873106,4872506,4871998	
chr7	4875328	4882925	4875839	4882624	-	Cre07.g346150.t1.1	Cre07.g346150.t1.1		4879744,4879445,4876999,4876513,4875328	4882925,4879513,4879173,4876629,4876268	
chr7	4883686	4885545	4883803	4884971	+	Cre07.g346200.t1.2	Cre07.g346200.t1.2		4883686	4885545	
chr7	4886287	4893155	4886845	4892944	-	Cre07.g346250.t1.1	Cre07.g346250.t1.1		4892379,4891777,4891186,4890155,4889491,4888753,4887773,4887413,4886287	4893155,4891931,4891275,4890274,4889601,4889205,4888178,4887522,4886935	
chr7	4893210	4898165	4893726	4897891	-	Cre07.g346300.t1.2	Cre07.g346300.t1.2		4893210	4898165	
chr7	4905246	4911867	4905757	4911353	+	Cre07.g346317.t1.1	Cre07.g346317.t1.1		4905246,4906016,4906741,4907470,4907666,4908190,4908887,4909111,4909596,4909826,4910497,4910842,4911254	4905850,4906089,4906887,4907518,4907774,4908227,4908982,4909392,4909715,4909867,4910597,4910905,4911867	May contain additional coding sequence in intronic N-island PMID: 27175017
chr7	4905483	4911867	4905757	4911353	+	Cre07.g346317.t2.1	Cre07.g346317.t2.1		4905483,4906016,4906741,4907470,4907666,4908190,4908887,4909111,4909596,4909826,4910497,4910842,4911254	4905850,4906089,4906887,4907518,4907774,4908227,4908982,4909392,4909715,4909867,4910597,4910905,4911867	May contain additional coding sequence in intronic N-island PMID: 27175017
chr7	4911873	4916815	4912656	4915822	-	Cre07.g346350.t1.2	Cre07.g346350.t1.2		4916648,4916492,4915723,4915371,4915055,4914740,4913914,4913606,4912980,4911873	4916815,4916546,4915843,4915447,4915181,4914829,4914024,4913685,4913133,4912716	
chr7	4911873	4916815	4912656	4915822	-	Cre07.g346350.t2.1	Cre07.g346350.t2.1		4916648,4916492,4915723,4915371,4915055,4913914,4913606,4912980,4911873	4916815,4916546,4915843,4915447,4915181,4914024,4913685,4913133,4912716	
chr7	4916920	4920975	4917520	4920901	-	Cre07.g346400.t1.1	Cre07.g346400.t1.1		4920645,4920142,4919849,4919319,4919079,4918770,4918257,4916920	4920975,4920260,4919950,4919419,4919129,4918905,4918334,4917913	FkbM is required for a specific methylation in the biosynthesis of the immunosuppressant FK56 in Streptomyces
chr7	4921030	4927555	4921391	4927429	-	Cre07.g346418.t1.2	Cre07.g346418.t1.2		4927188,4926596,4926184,4925805,4925343,4924951,4924160,4923783,4923358,4922966,4921868,4921030	4927555,4926764,4926297,4925909,4925436,4925017,4924747,4923919,4923470,4923098,4922667,4921575	
chr7	4927686	4930449	4927799	4929623	+	Cre07.g346450.t1.1	Cre07.g346450.t1.1		4927686,4928095,4928586,4929037,4929283,4929521	4927829,4928281,4928698,4929081,4929384,4930449	
chr7	4930496	4938387	4930846	4937790	+	Cre07.g346500.t1.2	Cre07.g346500.t1.2		4930496,4931228,4931548,4932044,4932321,4933702,4934763,4935597,4936092,4937328	4930869,4931333,4931649,4932151,4933405,4934278,4935092,4935778,4936197,4938387	
chr7	4938496	4940526	4938606	4940233	+	Cre07.g346525.t1.1	Cre07.g346525.t1.1		4938496,4938876,4939813,4940146	4938758,4938975,4939917,4940526	
chr7	4940576	4948784	4941094	4946363	+	Cre07.g346550.t1.1	Cre07.g346550.t1.1		4940576,4941637,4942042,4943683,4943991,4944396,4944725,4944901,4945233,4945545,4945772,4946036	4941385,4941706,4943384,4943787,4944065,4944479,4944799,4944957,4945295,4945604,4945831,4948784	
chr7	4949454	4953454	4951550	4953320	-	Cre07.g346600.t1.2	Cre07.g346600.t1.2		4953140,4952816,4949454	4953454,4952890,4952195	
chr7	4953606	4957487	4953782	4956732	+	Cre07.g346650.t1.1	Cre07.g346650.t1.1		4953606,4953963,4954238,4954508,4955258,4955676,4956018,4956540	4953814,4954046,4954307,4954976,4955463,4955895,4956163,4957487	
chr7	4957536	4960987	4957565	4959724	+	Cre07.g346672.t1.1	Cre07.g346672.t1.1		4957536,4957669,4958373,4959331	4957600,4958238,4959078,4960987	
chr7	4961036	4969687	4961646	4968649	+	PHC75	Cre07.g346698.t1.1		4961036,4961581,4962019,4962803,4963179,4963503,4964026,4964549,4965248,4967509,4967818,4968160	4961300,4961833,4962167,4962877,4963239,4963564,4964145,4965003,4967092,4967643,4967935,4969687	
chr7	4961206	4969687	4961727	4968649	+	PHC75	Cre07.g346698.t2.1		4961206,4961581,4961667,4962019,4962803,4963179,4963503,4964026,4964549,4965248,4967509,4967818,4968160	4961300,4961586,4961833,4962167,4962877,4963239,4963564,4964145,4965003,4967092,4967643,4967935,4969687	
chr7	4969981	4974435	4970307	4974280	-	PUS14	Cre07.g346750.t1.1		4973686,4973166,4972499,4972166,4971847,4969981	4974435,4973361,4973032,4972245,4971953,4971577	
chr7	4974546	4980657	4974769	4980085	+	Cre07.g346800.t1.2	Cre07.g346800.t1.2		4974546,4975572,4975846,4976379,4976674,4977134,4977593,4978026,4978488,4978797,4979417,4979807	4974953,4975670,4975976,4976456,4976784,4977223,4977651,4978113,4978586,4978953,4979686,4980657	FAD-dependent oxidoreductase, possibly a D-amino-acid dehydrogenase
chr7	4980660	4983645	4981818	4983545	-	Cre07.g346850.t1.2	Cre07.g346850.t1.2		4983534,4983374,4983109,4982801,4982589,4982245,4980660	4983645,4983417,4983261,4982896,4982701,4982347,4982012	
chr7	4987085	4990515	4988182	4990428	-	Cre07.g346900.t1.1	Cre07.g346900.t1.1		4990360,4990197,4989938,4989650,4989140,4988624,4987085	4990515,4990240,4990090,4989745,4989252,4988726,4988376	
chr7	4991360	4993815	4993135	4993761	-	Cre07.g346917.t1.1	Cre07.g346917.t1.1		4993707,4991360	4993815,4993330	
chr7	4994170	4996435	4995179	4996409	-	Cre07.g346933.t1.1	Cre07.g346933.t1.1		4996039,4994170	4996435,4995892	
chr7	4996500	5000945	4998706	5000833	-	Cre07.g346950.t1.1	Cre07.g346950.t1.1		5000822,5000664,5000404,5000121,4999577,4999150,4996500	5000945,5000707,5000556,5000216,4999689,4999252,4998900	
chr7	5002388	5013275	5005136	5012582	-	Cre07.g347000.t1.1	Cre07.g347000.t1.1		5011375,5011063,5010605,5010134,5009833,5009504,5008540,5006313,5002388	5013275,5011181,5010753,5010381,5009909,5009605,5009322,5008380,5006140	
chr7	5002388	5013275	5005136	5012582	-	Cre07.g347000.t2.1	Cre07.g347000.t2.1		5011375,5011063,5010605,5010134,5009833,5009504,5008540,5006313,5002388	5013275,5011181,5010750,5010381,5009909,5009605,5009322,5008380,5006140	
chr7	5014242	5020008	5014450	5019507	+	RSP7	Cre07.g347050.t1.2		5014242,5014615,5015268,5015786,5016324,5016751,5017064,5017513,5018371,5018834,5019327	5014540,5014819,5015364,5015888,5016425,5016809,5017199,5017707,5018532,5019007,5020008	A subunit in the radial spoke stalk with multiple EF-hands tethered to an RIIa domain [PMID: 16507594; GI:83284725]
chr7	5020136	5023464	5020361	5022834	+	Cre07.g347100.t1.2	Cre07.g347100.t1.2		5020136,5020622,5021062,5021488,5021880,5022239,5022739	5020466,5020795,5021176,5021573,5021996,5022395,5023464	
chr7	5023516	5025975	5023668	5025491	+	Cre07.g347150.t1.2	Cre07.g347150.t1.2		5023516,5024124,5024832,5025452	5023906,5024320,5025014,5025975	
chr7	5026046	5028787	5026367	5028028	+	Cre07.g347200.t1.1	Cre07.g347200.t1.1		5026046,5026345,5026728,5027120,5027490,5027929	5026242,5026421,5026819,5027209,5027622,5028787	
chr7	5028790	5033675	5029382	5033558	-	FIP37B	Cre07.g347250.t1.1		5033552,5033393,5033251,5033119,5032809,5031552,5030966,5030487,5030138,5028790	5033675,5033473,5033309,5033164,5032997,5031620,5031103,5030585,5030269,5029706	Homolog of FIP37, required for chromosome maintenance in Arabidopsis and yeast; Target of FKB12/rapamycin complex; next to close paralog Cre07.g347350
chr7	5033776	5038996	5033871	5038986	+	Cre07.g347300.t1.1	Cre07.g347300.t1.1		5033776,5034081,5034260,5034636,5035384,5036982,5037686,5038078,5038448,5038887	5033985,5034152,5034439,5035072,5035597,5037431,5037777,5038167,5038580,5038996	
chr7	5039227	5042115	5039427	5042053	-	FIP37A	Cre07.g347350.t1.1		5042047,5041888,5041746,5041614,5041304,5040047,5039227	5042115,5041968,5041804,5041659,5041492,5040115,5039598	Homolog of FIP37, required for chromosome maintenance in Arabidopsis and yeast; Target of FKB12/rapamycin complex; next to close paralog Cre07.g347250
chr7	5039227	5040365	5039427	5040327	-	FIP37A	Cre07.g347350.t2.1		5040258,5040047,5039227	5040365,5040115,5039598	Homolog of FIP37, required for chromosome maintenance in Arabidopsis and yeast; Target of FKB12/rapamycin complex; next to close paralog Cre07.g347250
chr7	5042216	5047017	5042366	5046272	+	Cre07.g347400.t1.2	Cre07.g347400.t1.2		5042216,5042576,5042755,5043131,5043879,5045477	5042480,5042647,5042934,5043567,5044092,5047017	
chr7	5047146	5051817	5047205	5051172	+	Cre07.g347450.t1.2	Cre07.g347450.t1.2		5047146,5048114	5047972,5051817	
chr7	5051821	5055745	5052160	5055588	-	OPR31	Cre07.g347500.t1.1		5055566,5055414,5055264,5051821	5055745,5055480,5055321,5055142	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr7	5055906	5066133	5056476	5065274	+	Cre07.g347550.t1.2	Cre07.g347550.t1.2		5055906,5056323,5059620,5060063,5060616,5061096,5061429,5062128,5063332	5056209,5059350,5059919,5060330,5060781,5061259,5061832,5063104,5066133	
chr7	5071666	5083486	5072697	5082796	+	Cre07.g347600.t1.1	Cre07.g347600.t1.1		5071666,5072637,5074354,5074948,5075465,5076053,5076274,5076713,5077181,5077563,5078092,5078480,5079015,5079506,5080095,5080863,5082464,5082769	5072190,5074113,5074647,5075097,5075620,5076118,5076487,5076924,5077379,5077733,5078213,5078687,5079298,5079719,5080433,5082219,5082518,5083486	
chr7	5071666	5083486	5072697	5082796	+	Cre07.g347600.t2.1	Cre07.g347600.t2.1		5071666,5072690,5074354,5074948,5075465,5076053,5076274,5076713,5077181,5077563,5078092,5078480,5079015,5079506,5080095,5080863,5082464,5082769	5072190,5074113,5074647,5075097,5075620,5076118,5076487,5076924,5077379,5077733,5078213,5078687,5079298,5079719,5080433,5082219,5082518,5083486	
chr7	5083500	5086885	5083804	5086771	-	Cre07.g347650.t1.2	Cre07.g347650.t1.2		5086492,5086199,5085977,5085577,5084963,5084510,5084277,5083500	5086885,5086250,5086049,5085650,5085127,5084613,5084340,5084043	
chr7	5087806	5094047	5087854	5093964	+	Cre07.g347700.t1.1	Cre07.g347700.t1.1		5087806,5088138,5088348,5088994,5089396,5089783,5090946,5091211,5092536	5087986,5088199,5088741,5089152,5089560,5090703,5091044,5092284,5094047	
chr7	5094095	5099523	5094127	5098455	+	Cre07.g347750.t1.1	Cre07.g347750.t1.1		5094095,5094800,5095233,5096236,5096480,5096717,5096992,5097384,5097754,5098065,5098365	5094576,5094999,5096090,5096390,5096569,5096804,5097169,5097510,5097867,5098214,5099523	
chr7	5099530	5103445	5099752	5103318	-	Cre07.g347800.t1.2	Cre07.g347800.t1.2		5103260,5102982,5102647,5102213,5101887,5101395,5100959,5099530	5103445,5103109,5102728,5102332,5101963,5101512,5101056,5100229	
chr7	5103606	5107117	5103826	5105986	+	Cre07.g347850.t1.1	Cre07.g347850.t1.1		5103606,5104715,5105026,5105698	5104347,5104820,5105493,5107117	
chr7	5107176	5115079	5107586	5113637	+	Cre07.g347900.t1.1	Cre07.g347900.t1.1		5107176,5108159,5108450,5109003,5109224,5110481,5110848,5111169,5111444,5111748,5112150,5113145,5113577	5107854,5108217,5108790,5109038,5110240,5110640,5110973,5111216,5111502,5111923,5112910,5113402,5115079	
chr7	5115126	5118956	5115204	5118005	+	Cre07.g347950.t1.2	Cre07.g347950.t1.2		5115126,5115552,5116627,5117477,5117867	5115210,5116346,5117265,5117656,5118956	
chr7	5118973	5134685	5119779	5134398	-	Cre07.g347980.t1.1	Cre07.g347980.t1.1		5134308,5133489,5132557,5131932,5131350,5128162,5127803,5127369,5126851,5126556,5126071,5125796,5125254,5124796,5122496,5121816,5120891,5118973	5134685,5133896,5133363,5132164,5131479,5128278,5127898,5127548,5127051,5126638,5126236,5125879,5125420,5124928,5124508,5122250,5121537,5120464	
chr7	5118973	5129015	5119779	5128968	-	Cre07.g347980.t2.1	Cre07.g347980.t2.1		5128959,5128162,5127803,5127369,5126851,5126556,5126071,5125796,5125254,5124796,5122496,5121816,5120891,5118973	5129015,5128278,5127898,5127548,5127051,5126638,5126236,5125879,5125420,5124928,5124508,5122250,5121537,5120464	
chr7	5129226	5130967	5129490	5130622	+	Cre07.g348010.t1.1	Cre07.g348010.t1.1		5129226,5129884	5129514,5130967	
chr7	5134916	5144117	5135372	5142229	+	Cre07.g348040.t1.1	Cre07.g348040.t1.1		5134916,5135918,5136394,5137001,5137567,5137951,5138421,5138681,5139112,5139607,5140474,5141479	5135466,5136064,5136540,5137224,5137665,5138075,5138540,5138735,5139257,5139776,5140640,5144117	May contain additional coding sequence in intronic N-island PMID: 27175017
chr7	5144127	5146115	5144618	5145955	-	Cre07.g348100.t1.2	Cre07.g348100.t1.2		5145680,5145277,5144127	5146115,5145333,5144790	
chr7	5146276	5148445	5146339	5146899	+	Cre07.g348150.t1.2	Cre07.g348150.t1.2		5146276,5146626	5146432,5148445	
chr7	5148450	5153785	5148979	5153341	-	SPH3	Cre07.g348200.t1.1		5153475,5153338,5152920,5152494,5151859,5151564,5151166,5150436,5149583,5148450	5153785,5153349,5153207,5152614,5152148,5151596,5151288,5150897,5150128,5149396	
chr7	5153926	5159317	5153998	5158580	+	Cre07.g348250.t1.2	Cre07.g348250.t1.2		5153926,5154483,5155021,5156050,5156802,5157282,5157745,5158429	5154064,5154575,5155719,5156412,5156921,5157419,5157842,5159317	
chr7	5159347	5164915	5160051	5164813	-	Cre07.g348300.t1.2	Cre07.g348300.t1.2		5164361,5164056,5163528,5163302,5161420,5160462,5159347	5164915,5164188,5163653,5163346,5162415,5161141,5160190	
chr7	5165449	5169374	5167156	5169066	-	PWR8	Cre07.g348350.t1.2		5169018,5168713,5165449	5169374,5168953,5168424	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr7	5169475	5176876	5169906	5175272	+	Cre07.g348400.t1.1	Cre07.g348400.t1.1		5169475,5170859,5171302,5171797,5172177,5172732,5173497,5173946	5169933,5171073,5171443,5171922,5172263,5173340,5173742,5176876	
chr7	5176903	5181044	5178709	5180700	-	Cre07.g348450.t1.1	Cre07.g348450.t1.1		5180344,5180043,5179681,5179370,5176903	5181044,5180175,5179789,5179536,5179186	
chr7	5181315	5185459	5182055	5185043	+	Cre07.g348500.t1.1	Cre07.g348500.t1.1		5181315,5181915,5182245,5182648,5182948,5183402,5183833,5184169,5184544,5184887	5181727,5182179,5182384,5182765,5183060,5183505,5183917,5184239,5184703,5185459	
chr7	5185513	5196614	5186251	5195960	-	TGL13	Cre07.g348550.t1.1		5196166,5195812,5195625,5195235,5195009,5194569,5194257,5193928,5193571,5193182,5192896,5192667,5192114,5191692,5191411,5191007,5190655,5190246,5190004,5189715,5189400,5188860,5188548,5188260,5187963,5187571,5187077,5186633,5185513	5196614,5195971,5195664,5195415,5195089,5194682,5194308,5194007,5193674,5193269,5192972,5192709,5192251,5191963,5191490,5191265,5190718,5190350,5190032,5189775,5189534,5188964,5188655,5188323,5188075,5187747,5187211,5186753,5186400	
chr7	5185513	5196614	5186251	5195960	-	TGL13	Cre07.g348550.t2.1		5196391,5195812,5195625,5195235,5195009,5194569,5194257,5193928,5193571,5193182,5192896,5192667,5192114,5191692,5191411,5191007,5190655,5190246,5190004,5189715,5189400,5188860,5188548,5188260,5187963,5187571,5187077,5186633,5185513	5196614,5195971,5195664,5195415,5195089,5194682,5194308,5194007,5193674,5193269,5192972,5192709,5192251,5191963,5191490,5191265,5190718,5190350,5190032,5189775,5189534,5188964,5188655,5188323,5188075,5187747,5187211,5186753,5186400	
chr7	5197085	5201236	5197378	5200504	+	SULP1	Cre07.g348600.t1.1		5197085,5197580,5197937,5199391,5200177	5197502,5197657,5198556,5199477,5201236	transmembrane component of chloroplast sulfate-transporting ABC transporter; ATP-dependent sulfate-transport system of chloroplast envelope, homologous to SulP2; [GI:18542422]
chr7	5201635	5210216	5201864	5208681	+	CYG65	Cre07.g348650.t1.2		5201635,5202539,5202920,5203243,5203478,5203687,5203926,5204290,5204575,5204963,5205289,5205599,5205864,5206292,5206582,5206825,5207175,5207376,5207614,5207830	5201998,5202753,5203048,5203331,5203520,5203718,5204014,5204354,5204692,5205056,5205396,5205659,5206050,5206397,5206607,5206973,5207229,5207433,5207698,5210216	
chr7	5210219	5213463	5210740	5213259	-	Cre07.g348700.t1.2	Cre07.g348700.t1.2		5212998,5212168,5211588,5211169,5210219	5213463,5212687,5211935,5211338,5210956	
chr7	5210219	5213463	5210740	5213259	-	Cre07.g348700.t2.1	Cre07.g348700.t2.1		5212998,5212168,5211624,5211169,5210219	5213463,5212687,5211935,5211338,5210956	
chr7	5213577	5216315	5213968	5215861	+	Cre07.g348750.t1.1	Cre07.g348750.t1.1		5213577,5214242,5214484,5214788,5215176,5215603	5214085,5214304,5214608,5214911,5215316,5216315	
chr7	5216532	5222344	5217181	5221970	-	TAB1	Cre07.g348800.t1.1		5221952,5221720,5220092,5219371,5219042,5216532	5222344,5221878,5221597,5219787,5219128,5218858	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; activates translation of psaB mRNA
chr7	5222391	5225334	5222672	5225134	-	MRPL2	Cre07.g348850.t1.2		5225071,5224915,5224706,5224389,5224084,5223754,5223452,5223092,5222391	5225334,5224981,5224792,5224570,5224201,5223882,5223574,5223347,5222799	
chr7	5225485	5228656	5225627	5228460	+	DNJ19	Cre07.g348900.t1.2		5225485,5225863,5226135,5226524,5226798,5227071,5227453,5227686	5225705,5225923,5226216,5226611,5226845,5227307,5227533,5228656	DnaJ-like protein, probably cytosolic; contains N-terminal J-domain (pfam226); no homology to other proteins in protein database
chr7	5228753	5232859	5229233	5232338	+	Cre07.g348951.t1.1	Cre07.g348951.t1.1		5228753,5229204,5229527,5230345,5230594,5231431,5231728,5232134	5229101,5229393,5230154,5230502,5231285,5231529,5231802,5232859	
chr7	5232893	5240414	5233826	5240279	-	Cre07.g349000.t1.1	Cre07.g349000.t1.1		5240034,5239824,5239676,5239299,5238583,5238074,5237633,5237267,5236374,5236029,5235776,5235494,5235168,5234745,5234352,5232893	5240414,5239916,5239688,5239403,5238662,5238434,5237867,5237510,5237001,5236106,5235850,5235631,5235239,5234936,5234471,5234120	
chr7	5241137	5244944	5241649	5244629	-	Cre07.g349050.t1.2	Cre07.g349050.t1.2		5244451,5243964,5243636,5242883,5241137	5244944,5244324,5243780,5243497,5242744	
chr7	5245055	5255946	5245638	5255484	+	HEL39	Cre07.g349100.t1.1		5245055,5246714,5247076,5247437,5247929,5248318,5248737,5249045,5249431,5249831,5250401,5250770,5251184,5251540,5251797,5252092,5252414,5252772,5253239,5253753,5254006,5254159,5254490,5254696,5254967,5255283	5246408,5246866,5247172,5247571,5247990,5248435,5248827,5249114,5249572,5249962,5250516,5250853,5251268,5251617,5251877,5252187,5252505,5252905,5253458,5253843,5254074,5254299,5254535,5254760,5255080,5255946	
chr7	5255995	5259345	5256110	5256825	+	Cre07.g349119.t1.1	Cre07.g349119.t1.1		5255995,5256601	5256270,5259345	
chr7	5259759	5263704	5260985	5263202	-	Cre07.g349137.t1.2	Cre07.g349137.t1.2		5263422,5263005,5259759	5263704,5263327,5262654	
chr7	5264215	5271002	5264521	5268053	+	Cre07.g349152.t1.1	Cre07.g349152.t1.1		5264215,5264856,5265610,5266196,5266631,5266883,5267083,5267336,5267546	5264719,5265456,5265944,5266360,5266743,5266931,5267145,5267404,5271002	
chr7	5264215	5271002	5264521	5268053	+	Cre07.g349152.t2.1	Cre07.g349152.t2.1		5264215,5264856,5265610,5266196,5266631,5266883,5267083,5267336,5267546	5264719,5265444,5265944,5266360,5266743,5266931,5267145,5267404,5271002	
chr7	5272359	5273314	5272966	5273159	-	Cre07.g349167.t1.1	Cre07.g349167.t1.1		5272359	5273314	
chr7	5273451	5275476	5273554	5275055	+	Cre07.g349200.t1.2	Cre07.g349200.t1.2		5273451,5273987,5274356,5274505,5274908	5273590,5274120,5274401,5274600,5275476	
chr7	5275479	5278259	5276233	5278211	-	Cre07.g349250.t1.2	Cre07.g349250.t1.2		5278002,5277651,5277248,5276920,5276615,5275479	5278259,5277752,5277303,5276957,5276714,5276394	
chr7	5278365	5284866	5278617	5284466	+	HEL41	Cre07.g349300.t1.2		5278365,5279035,5279367,5279762,5280148,5280491,5280853,5281450,5281902,5282277,5282697,5283228,5283572,5284130	5278782,5279148,5279477,5279860,5280229,5280561,5281287,5281614,5282018,5282472,5282968,5283362,5283910,5284866	
chr7	5284875	5286164	5285248	5286022	-	Cre07.g349350.t1.2	Cre07.g349350.t1.2		5285866,5285663,5284875	5286164,5285701,5285359	
chr7	5286265	5287756	5286332	5287290	+	Cre07.g349400.t1.1	Cre07.g349400.t1.1		5286265,5286492,5286741	5286338,5286599,5287756	
chr7	5287769	5288684	5287807	5288607	-	Cre07.g349450.t1.1	Cre07.g349450.t1.1		5288468,5288219,5287769	5288684,5288328,5288029	
chr7	5288815	5297915	5288940	5297824	+	Cre07.g349500.t1.1	Cre07.g349500.t1.1		5288815,5289303,5289553,5289760,5290032,5290365,5290810,5291840,5292119,5292701,5294628,5295307,5295681,5296791,5297275	5289183,5289386,5289640,5289855,5290216,5290577,5291686,5291936,5292521,5294499,5294967,5295453,5295878,5297114,5297915	null-allele mutant was isolated (PMID 29743196)
chr7	5298225	5304056	5298975	5303361	+	Cre07.g349520.t1.1	Cre07.g349520.t1.1		5298225,5299812,5300174,5300808,5301661,5301893,5302095,5302344,5302807,5303142	5299693,5299991,5300583,5301277,5301745,5301932,5302141,5302580,5302893,5304056	
chr7	5304145	5308246	5304192	5308001	+	Cre07.g349540.t1.1	Cre07.g349540.t1.1		5304145,5305294,5305610,5306150,5306512,5306836,5307009,5307253,5307537,5307782	5305027,5305449,5305941,5306373,5306596,5306875,5307055,5307414,5307623,5308246	
chr7	5306005	5308246	5306080	5308001	+	Cre07.g349540.t2.1	Cre07.g349540.t2.1		5306005,5306512,5306836,5307009,5307253,5307537,5307782	5306373,5306596,5306875,5307055,5307414,5307623,5308246	
chr7	5306835	5308246	5306962	5308001	+	Cre07.g349540.t3.1	Cre07.g349540.t3.1		5306835,5307253,5307537,5307782	5307055,5307414,5307623,5308246	
chr7	5308270	5310674	5308914	5310324	-	ISCA2	Cre07.g349600.t1.2		5310063,5309720,5309270,5308270	5310674,5309847,5309378,5308983	A-type scaffold protein, similar to HesB/YadR
chr7	5311679	5315294	5312203	5315061	-	Cre07.g349650.t1.2	Cre07.g349650.t1.2		5315046,5314536,5314100,5313669,5313010,5312646,5311679	5315294,5314698,5314237,5313886,5313350,5312793,5312377	
chr7	5316232	5320124	5317233	5320016	-	Cre07.g349700.t1.2	Cre07.g349700.t1.2		5319961,5319563,5319072,5318587,5318009,5317569,5316232	5320124,5319674,5319186,5318715,5318115,5317758,5317362	homology to predicted nucleoside-diphosphate-sugar epimerases
chr7	5320285	5322587	5320504	5321313	+	Cre07.g349750.t1.2	Cre07.g349750.t1.2		5320285,5320776,5320962	5320611,5320833,5322587	
chr7	5322846	5328914	5323326	5328790	-	Cre07.g349800.t1.2	Cre07.g349800.t1.2		5322846	5328914	
chr7	5328989	5334344	5329158	5334294	-	Cre07.g349850.t1.2	Cre07.g349850.t1.2		5334225,5333912,5333091,5332740,5332136,5331767,5331095,5330758,5330449,5329827,5328989	5334344,5334037,5333796,5332858,5332324,5331909,5331194,5330876,5330527,5330003,5329548	
chr7	5334445	5338396	5334550	5337917	+	Cre07.g349900.t1.1	Cre07.g349900.t1.1		5334445,5334886,5335100,5335559,5336121,5336488,5336761,5337487	5334757,5334942,5335199,5335693,5336215,5336565,5337272,5338396	
chr7	5338399	5346584	5338859	5346557	-	Cre07.g349950.t1.1	Cre07.g349950.t1.1		5346422,5346271,5345900,5345329,5344698,5344042,5343260,5342769,5342286,5341734,5341405,5340908,5340301,5339910,5339422,5338399	5346584,5346357,5346004,5345566,5344822,5344234,5343363,5342859,5342386,5342024,5341487,5341166,5340369,5339948,5339673,5339078	
chr7	5346648	5350834	5347123	5349843	-	Cre07.g349966.t1.1	Cre07.g349966.t1.1		5350037,5349768,5349459,5349039,5348085,5347831,5347384,5346648	5350834,5349878,5349546,5349145,5348812,5347870,5347488,5347297	
chr7	5346648	5350994	5347123	5349843	-	Cre07.g349966.t2.1	Cre07.g349966.t2.1		5350575,5350313,5350037,5349768,5349459,5349039,5348085,5347831,5347384,5346648	5350994,5350348,5350097,5349878,5349546,5349145,5348812,5347870,5347488,5347297	
chr7	5351453	5364808	5352442	5364409	-	TGL14	Cre07.g350000.t1.1		5363886,5363605,5363332,5362805,5361340,5360924,5359101,5358745,5358339,5358118,5357688,5357388,5356950,5356487,5355931,5355409,5354622,5354247,5353909,5353247,5352776,5351453	5364808,5363711,5363394,5363025,5362681,5361102,5359155,5358803,5358438,5358207,5357774,5357533,5357043,5356609,5356102,5355701,5354680,5354351,5354040,5353619,5353039,5352550	
chr7	5365456	5368978	5365943	5368895	-	Cre07.g350050.t1.1	Cre07.g350050.t1.1		5368634,5368394,5368204,5367980,5367687,5367450,5366752,5366368,5365456	5368978,5368429,5368264,5368069,5367764,5367556,5367300,5366475,5366141	
chr7	5369079	5389243	5369231	5388661	+	Cre07.g350100.t1.1	Cre07.g350100.t1.1		5369079,5370018,5370445,5370750,5371056,5371399,5371697,5372116,5372382,5372654,5373236,5373603,5373922,5374412,5374816,5375338,5375706,5376119,5376453,5376804,5377257,5377550,5378783,5379150,5380015,5380448,5380808,5381102,5381479,5381769,5382082,5382447,5383061,5383329,5384310,5387866	5369882,5370168,5370549,5370820,5371200,5371494,5371819,5372201,5372459,5372828,5373306,5373731,5373993,5374487,5374937,5375403,5375837,5376208,5376527,5376926,5377333,5377829,5378890,5379251,5380212,5380525,5380933,5381196,5381577,5381823,5382193,5382823,5383132,5384022,5387563,5389243	
chr7	5400629	5404678	5401188	5403883	-	Cre07.g350200.t1.2	Cre07.g350200.t1.2		5403771,5403371,5402108,5401762,5401458,5400629	5404678,5403520,5402193,5401825,5401556,5401340	
chr7	5405258	5409678	5406127	5408879	-	Cre07.g350250.t1.2	Cre07.g350250.t1.2		5408767,5408386,5407241,5406893,5406579,5405258	5409678,5408520,5407326,5406956,5406677,5406366	
chr7	5410633	5413348	5411143	5413200	-	Cre07.g350300.t1.2	Cre07.g350300.t1.2		5413073,5412482,5412077,5411869,5411491,5410633	5413348,5412889,5412162,5411932,5411589,5411253	
chr7	5414389	5419980	5415037	5419441	+	FAP217	Cre07.g350350.t1.2		5414389,5415018,5416233,5416578,5416913	5414654,5416021,5416427,5416776,5419980	Flagellar Associated Coiled-Coil Protein, found in the flagellar proteome
chr7	5419983	5421663	5420042	5421494	-	PIN3	Cre07.g350400.t1.1		5421388,5421083,5420819,5420540,5420155,5419983	5421663,5421186,5420910,5420621,5420328,5420078	Peptidyl-prolyl cis-trans isomerase, parvulin-type, Ppi-C type (EC 5.2.1.8). Rhodanese domain; most similar to AtPIN3 (At5g19370) [PMID: 15051864, PMID:15047905]
chr7	5421769	5425720	5421802	5425345	+	Cre07.g350450.t1.1	Cre07.g350450.t1.1		5421769,5421896,5422174,5422356,5422681,5423940,5425012	5421821,5422081,5422234,5422563,5423799,5424815,5425720	
chr7	5425959	5438500	5426028	5437847	+	Cre07.g350451.t1.2	Cre07.g350451.t1.2		5425959,5426269,5426612,5427169,5427544,5427800,5428665,5429567,5429925,5430816,5431604,5431820,5432021,5432238,5432495,5432935,5433251,5433478,5433904,5434193,5434513,5434908,5435280,5435512,5435798,5435998,5436415,5436854,5437124,5437391,5437745	5426074,5426408,5426700,5427322,5427635,5427902,5429218,5429702,5430761,5431412,5431685,5431881,5432085,5432304,5432740,5433035,5433284,5433639,5433992,5434247,5434638,5434985,5435348,5435588,5435879,5436285,5436540,5436972,5437217,5437567,5438500	
chr7	5441349	5450318	5441830	5450033	-	TSV1	Cre07.g350500.t1.2		5449921,5449671,5449278,5448880,5448561,5447934,5447348,5446984,5446536,5446235,5445844,5445419,5445032,5444714,5444430,5444079,5443781,5443520,5443232,5442844,5442398,5442085,5441349	5450318,5449758,5449404,5449058,5448652,5448084,5447461,5447099,5446728,5446409,5446029,5445526,5445254,5444826,5444537,5444192,5443922,5443593,5443342,5442990,5442541,5442159,5441863	
chr7	5450383	5453858	5450453	5453800	-	Cre07.g350550.t1.1	Cre07.g350550.t1.1		5453698,5453438,5453198,5452759,5452461,5452252,5451737,5451451,5450383	5453858,5453524,5453257,5453057,5452617,5452331,5452085,5451542,5451318	Endonuclease/exonuclease/phosphatase family protein; null-allele mutant was isolated (PMID 29743196)
chr7	5453987	5457055	5454491	5455725	+	CSG7	Cre07.g350600.t1.1		5453987,5454349	5454182,5457055	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	5457063	5457731	5457079	5457606	-	Cre07.g350626.t1.1	Cre07.g350626.t1.1		5457380,5457063	5457731,5457165	
chr7	5457833	5458448	5457992	5458335	-	Cre07.g350652.t1.1	Cre07.g350652.t1.1		5457833	5458448	
chr7	5457833	5458298	5457992	5458185	-	Cre07.g350652.t2.1	Cre07.g350652.t2.1		5457833	5458298	
chr7	5458390	5464240	5458606	5464195	+	Cre07.g350700.t1.1	Cre07.g350700.t1.1		5458390,5459486,5459938,5460294,5460581,5460910,5461428,5462302,5463719,5464020,5464153	5459315,5459722,5460140,5460341,5460708,5461270,5462186,5463582,5463929,5464054,5464240	
chr7	5464250	5469638	5465156	5469137	-	PTOX1	Cre07.g350750.t1.2		5469300,5469127,5468921,5468699,5468253,5467703,5467330,5466898,5466449,5466014,5465699,5465408,5464250	5469638,5469182,5468987,5468765,5468432,5467795,5467427,5467120,5466611,5466113,5465768,5465458,5465219	Plastoquinol oxydase, regulates photosyntetic electron flow
chr7	5469739	5474784	5469962	5474432	+	Cre07.g350800.t1.1	Cre07.g350800.t1.1		5469739,5470268,5470878,5471151,5471370,5471575,5471748,5471956,5473015,5473696	5470083,5470792,5471038,5471273,5471453,5471631,5471795,5472874,5473525,5474784	
chr7	5475874	5479168	5477333	5478609	-	Cre07.g350850.t1.2	Cre07.g350850.t1.2		5478942,5478552,5477809,5477535,5475874	5479168,5478665,5478411,5477603,5477399	null-allele mutant was isolated (PMID 29743196)
chr7	5479217	5484128	5479417	5484016	-	Cre07.g350867.t1.1	Cre07.g350867.t1.1		5483428,5481024,5479217	5484128,5483198,5480836	
chr7	5479217	5483288	5479417	5483154	-	Cre07.g350867.t2.1	Cre07.g350867.t2.1		5481024,5479217	5483288,5480836	
chr7	5484183	5491618	5485751	5491466	-	Cre07.g350900.t1.1	Cre07.g350900.t1.1		5491292,5490898,5490636,5490355,5490065,5489342,5489000,5484183	5491618,5491048,5490703,5490415,5490140,5489570,5489074,5488790	
chr7	5491744	5494258	5492133	5493880	-	Cre07.g350926.t1.1	Cre07.g350926.t1.1		5493694,5493232,5492912,5492422,5491744	5494258,5493285,5493033,5492530,5492169	
chr7	5494469	5499240	5494730	5497934	+	Cre07.g350950.t1.1	Cre07.g350950.t1.1		5494469,5494931,5495651,5496118,5496403,5496651,5497040,5497357,5497808	5494752,5495281,5495700,5496225,5496459,5496734,5497102,5497428,5499240	
chr7	5494469	5499380	5494730	5497934	+	Cre07.g350950.t2.1	Cre07.g350950.t2.1		5494469,5494931,5495651,5496118,5496403,5496651,5497040,5497357,5497808	5494752,5495281,5495700,5496225,5496459,5496734,5497102,5497428,5499380	
chr7	5499559	5500578	5499918	5500102	-	Cre07.g350976.t1.1	Cre07.g350976.t1.1		5499559	5500578	
chr7	5500716	5509378	5501459	5509203	-	Cre07.g351000.t1.1	Cre07.g351000.t1.1		5509157,5508796,5508510,5508198,5507416,5507180,5506772,5506427,5506015,5505659,5505146,5504738,5504389,5503968,5503591,5503178,5502704,5502145,5501662,5500716	5509378,5508851,5508572,5508357,5508104,5507265,5507024,5506527,5506168,5505799,5505223,5504809,5504507,5504085,5503647,5503338,5502887,5502344,5501895,5501459	contains two WW repeats, involved in binding Pro-rich proteins or phosphoproteins, and four FF domains, also involved in protein binding
chr7	5511083	5515714	5511256	5514757	+	VPS23	Cre07.g351050.t1.2		5511083,5511487,5511631,5511815,5512112,5512442,5513475,5513847,5514152,5514511	5511376,5511539,5511679,5511880,5512252,5513263,5513552,5513960,5514241,5515714	Expressed Protein. Similar to VPS23/Tsg101, Tsg101/UBCc-like-domain protein, component of the ESCRT-I complex involved in the ubiquitin-mediated internalization into the multi-vesicular body (late endosome)
chr7	5516023	5523424	5516108	5522356	+	Cre07.g351100.t1.2	Cre07.g351100.t1.2		5516023,5516710,5517063,5517395,5517686,5517964,5518481,5518879,5519199,5519608,5520198,5520810,5521549	5516228,5516823,5517152,5517499,5517736,5518128,5518641,5518984,5519243,5519919,5520494,5521316,5523424	
chr7	5523427	5527362	5524093	5527176	-	FA2	Cre07.g351150.t1.2		5526753,5526358,5526090,5525106,5524845,5524529,5523427	5527362,5526505,5526250,5525822,5524889,5524658,5524326	Flagellar Autonomy 2 protein, NIMA family kinase; PMID: 1195892.  Associated with flagellar shortening and detachment, and in the G2/M transition of the cell cycle
chr7	5527463	5531744	5527642	5531208	+	Cre07.g351200.t1.2	Cre07.g351200.t1.2		5527463,5528160,5528828,5529166,5529683,5530159,5530683,5530920	5527900,5528612,5528937,5529289,5529907,5530386,5530784,5531744	
chr7	5531757	5535052	5532031	5534739	-	Cre07.g351300.t1.2	Cre07.g351300.t1.2		5534653,5534366,5533903,5533482,5533057,5531757	5535052,5534552,5534175,5533639,5533148,5532648	
chr7	5535413	5538534	5535474	5536697	+	CSG8	Cre07.g351350.t1.2		5535413,5536040	5535888,5538534	Belongs to family G of Chlamydomonadales-specific proteins, all on chromosome 7; no known function
chr7	5539331	5547682	5539737	5547458	-	MCM10	Cre07.g351400.t1.2		5547238,5547082,5546791,5546297,5545979,5545623,5545147,5544792,5544390,5543442,5543174,5541230,5540860,5540400,5539331	5547682,5547152,5546876,5546358,5546040,5545706,5545278,5544857,5544467,5543862,5543235,5542985,5540942,5540578,5539903	
chr7	5547990	5553282	5548697	5553179	-	Cre07.g351450.t1.1	Cre07.g351450.t1.1		5553066,5552930,5552716,5552546,5552267,5552110,5551641,5549594,5547990	5553282,5552989,5552857,5552590,5552379,5552167,5551973,5551471,5549447	
chr7	5553383	5559614	5553601	5559033	+	Cre07.g351500.t1.1	Cre07.g351500.t1.1		5553383,5553816,5553992,5554202,5554584,5554931,5555416,5556068	5553672,5553890,5554040,5554312,5554680,5555247,5555855,5559614	
chr7	5560352	5569082	5563288	5568559	-	Cre07.g351550.t1.1	Cre07.g351550.t1.1		5568836,5568465,5568214,5567793,5566292,5565538,5565122,5560352	5569082,5568619,5568284,5568032,5567424,5566168,5565291,5564879	
chr7	5569183	5573584	5569214	5573202	+	HEL40	Cre07.g351600.t1.2		5569183,5569705,5570057,5570256,5570563,5570880,5571326,5572483,5573091	5569230,5569775,5570170,5570447,5570661,5571041,5572225,5572776,5573584	
chr7	5573862	5576396	5573978	5575337	+	FAP20	Cre07.g351650.t1.1		5573862,5574187,5574445,5574670,5574843,5575192,5575322	5574063,5574364,5574508,5574753,5574970,5575210,5576396	Flagellar Associated Protein; found in the basal body proteome as BUG22 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 157384]; required for planar beating and may interact with tectin and PACRG.  Mutant lacks beaks.  Inner junction protein
chr7	5576552	5578752	5577015	5578647	-	Cre07.g351700.t1.2	Cre07.g351700.t1.2		5578542,5578403,5577822,5577406,5576552	5578752,5578462,5577857,5577523,5577212	
chr7	5578833	5583082	5578969	5582807	+	Cre07.g351750.t1.2	Cre07.g351750.t1.2		5578833,5579401,5579864,5580658,5581198,5581655,5582586	5579032,5579526,5579962,5580771,5581377,5581811,5583082	
chr7	5583143	5587454	5583235	5587111	+	PTK12	Cre07.g351800.t1.1		5583143,5584149,5584510,5585002,5585409,5585640,5585883,5586112,5586425,5586778	5584007,5584304,5584808,5585258,5585490,5585679,5585929,5586261,5586520,5587454	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr7	5585823	5587454	5585890	5587111	+	PTK12	Cre07.g351800.t2.1		5585823,5586112,5586425,5586778	5585929,5586261,5586520,5587454	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329)
chr7	5587543	5596851	5587819	5595561	+	Cre07.g351825.t1.1	Cre07.g351825.t1.1		5587543,5588372,5588671,5589049,5589610,5589997,5590231,5590606,5591416,5591849,5593082,5593807,5594014,5594445,5594666,5594871,5595017,5595335,5595524	5588179,5588434,5588709,5589203,5589712,5590049,5590418,5591217,5591600,5592610,5593658,5593895,5594274,5594535,5594704,5594891,5595165,5595384,5596851	
chr7	5596857	5599922	5597428	5599757	-	Cre07.g351850.t1.2	Cre07.g351850.t1.2		5599673,5599129,5598839,5598453,5598093,5597776,5596857	5599922,5599226,5598927,5598577,5598190,5597844,5597537	Related to GCN5
chr7	5599977	5608602	5601401	5608324	-	Cre07.g351900.t1.1	Cre07.g351900.t1.1		5607955,5607706,5607494,5607154,5606839,5606661,5606132,5605449,5605066,5603972,5603287,5603057,5602678,5602416,5602247,5602051,5601770,5601563,5599977	5608602,5607768,5607532,5607305,5606941,5606713,5606310,5605937,5605250,5604817,5603824,5603145,5602938,5602506,5602285,5602071,5601918,5601612,5601438	
chr7	5608657	5616162	5609703	5615252	-	ZRT1	Cre07.g351950.t1.1		5615874,5615144,5614267,5613759,5612646,5612386,5611908,5611299,5610955,5610616,5610117,5608657	5616162,5615501,5614764,5614024,5613324,5612451,5612221,5611738,5611034,5610718,5610175,5609934	related to plant homologs; (CrZIP1); PMID: 15710683; PMID: 16766055
chr7	5616513	5622604	5616547	5620122	+	Cre07.g352000.t1.2	Cre07.g352000.t1.2		5616513,5617045,5617291,5617611,5617959,5618352,5618736,5619040,5619266,5619607,5619861	5616847,5617131,5617428,5617694,5618029,5618436,5618859,5619079,5619377,5619666,5622604	
chr7	5622653	5629605	5623395	5629457	+	Cre07.g352075.t1.1	Cre07.g352075.t1.1		5622653,5624471,5625540,5627335,5628431,5628782,5629109	5623426,5624777,5625632,5627667,5628542,5628841,5629605	
chr7	5629804	5634012	5630806	5633477	-	Cre07.g352150.t1.1	Cre07.g352150.t1.1		5633466,5633363,5632344,5631722,5631284,5629804	5634012,5633401,5632392,5631956,5631451,5631063	
chr7	5629804	5634012	5630806	5633477	-	Cre07.g352150.t2.1	Cre07.g352150.t2.1		5633456,5633363,5631722,5631284,5629804	5634012,5633401,5631956,5631451,5631063	
chr7	5629804	5632952	5630806	5632365	-	Cre07.g352150.t3.1	Cre07.g352150.t3.1		5632344,5631722,5631284,5629804	5632952,5631956,5631451,5631063	
chr7	5634133	5636104	5634529	5635904	+	Cre07.g352213.t1.2	Cre07.g352213.t1.2		5634133,5635255,5635582,5635898	5634733,5635359,5635785,5636104	
chr7	5636305	5643082	5637301	5642949	-	HEL42	Cre07.g352250.t1.1		5642762,5642368,5642152,5640361,5640124,5639896,5639691,5639335,5638829,5638167,5637773,5636305	5643082,5642403,5642175,5640861,5640206,5639936,5639783,5639552,5638896,5638404,5637895,5637558	Contains protein kinase domain
chr7	5636305	5643082	5637301	5642949	-	HEL42	Cre07.g352250.t2.1		5642762,5642368,5642152,5640361,5640124,5639896,5639691,5639335,5638829,5638167,5637773,5636305	5643082,5642400,5642175,5640861,5640206,5639936,5639783,5639552,5638896,5638404,5637895,5637558	Contains protein kinase domain
chr7	5643297	5656062	5643581	5655968	-	Cre07.g352251.t1.1	Cre07.g352251.t1.1		5655840,5655688,5655479,5654373,5653759,5653210,5652781,5652355,5651660,5651338,5650752,5650423,5649553,5649076,5648613,5647912,5647364,5646795,5646431,5645331,5644878,5644326,5643297	5656062,5655751,5655583,5654624,5654073,5653383,5652843,5652516,5651763,5651393,5650945,5650506,5649867,5649342,5648706,5647987,5647562,5646965,5646622,5646208,5645049,5644566,5644009	
chr7	5656653	5659984	5656754	5659704	+	Cre07.g352300.t1.2	Cre07.g352300.t1.2		5656653,5657008,5657561,5657801,5658013,5658421,5658844,5659055,5659530	5656856,5657349,5657635,5657842,5658063,5658545,5658898,5659204,5659984	
chr7	5660011	5670072	5660343	5669791	-	FHL3	Cre07.g352350.t1.2		5669567,5668762,5668215,5667810,5667333,5666839,5666312,5665939,5665512,5664972,5664500,5664100,5663799,5663303,5662833,5662221,5661705,5661257,5660879,5660570,5660011	5670072,5669176,5668298,5667944,5667422,5667027,5666380,5666048,5665674,5665132,5664653,5664258,5663874,5663421,5662997,5662389,5661916,5661388,5660966,5660701,5660474	Similar to FtsH protease, but lacks peptidase HEXXH motif, like At FtsHi; may function with Tic214 (Ycf2) in the TIC translocon
chr7	5670185	5677264	5670227	5676717	+	Cre07.g352400.t1.2	Cre07.g352400.t1.2		5670185,5670406,5670777,5671149,5671553,5671779,5672308,5672470,5673096,5673565,5673937,5674308,5674712,5675114,5675478,5675857	5670263,5670463,5670943,5671359,5671619,5672061,5672353,5672667,5673409,5673633,5674069,5674486,5674824,5675355,5675663,5677264	May be a phosphoinositide 5-phosphatase or inositol-polyphosphate 5-phosphatase
chr7	5677313	5680534	5677343	5680046	+	Cre07.g352450.t1.2	Cre07.g352450.t1.2		5677313,5677597,5677993,5678318,5678570,5678949,5679409,5679830	5677517,5677786,5678053,5678375,5678697,5679020,5679493,5680534	Possible retinol/17-beta hydroxysteroid dehydrogenase
chr7	5685887	5694782	5687479	5694677	-	Cre07.g352500.t1.1	Cre07.g352500.t1.1		5694638,5694521,5694022,5692282,5691860,5690112,5689607,5689247,5688927,5685887	5694782,5694572,5694246,5693849,5692072,5691642,5689838,5689373,5689094,5688586	
chr7	5694837	5696642	5695484	5696540	-	RDP3	Cre07.g352550.t1.2		5696417,5696145,5695816,5694837	5696642,5696261,5695914,5695589	
chr7	5696697	5703242	5697089	5703148	-	Cre07.g352600.t1.1	Cre07.g352600.t1.1		5703085,5702807,5702437,5702076,5701737,5701375,5701069,5700855,5699930,5699695,5699385,5699171,5698900,5698629,5698361,5698006,5696697	5703242,5702882,5702554,5702226,5701814,5701530,5701188,5700885,5700681,5699811,5699531,5699196,5699051,5698684,5698435,5698173,5697689	
chr7	5703393	5706586	5703760	5706210	+	Cre07.g352650.t1.2	Cre07.g352650.t1.2		5703393,5705132,5705744,5706135	5704807,5705424,5705837,5706586	
chr7	5711694	5717008	5712304	5716613	-	MRS3	Cre07.g352750.t1.2		5715845,5715144,5714812,5714436,5714112,5713620,5713016,5712621,5711694	5717008,5715324,5714903,5714537,5714189,5713811,5713177,5712761,5712445	metal ion transporter; related to plant homologs; CorA-like and putative mitochondrial splicing factor
chr7	5717130	5729901	5717498	5729022	+	Cre07.g352800.t1.2	Cre07.g352800.t1.2		5717130,5718010,5718437,5718656,5719090,5719467,5719922,5720329,5720758,5721522,5722044,5722465,5722907,5723678,5724091,5724506,5725054,5725679,5725933,5726268,5726669,5726951,5727846,5728416,5728821	5717639,5718146,5718476,5718739,5719270,5719594,5720059,5720478,5720865,5721821,5722151,5722596,5723233,5723842,5724240,5724661,5725338,5725741,5726062,5726437,5726742,5727586,5727954,5728493,5729901	
chr7	5730167	5731226	5730753	5731148	-	PRPL32	Cre07.g352850.t1.2		5730938,5730167	5731226,5730840	imported to chloroplast; Chloroplast large ribosomal subunit protein L32
chr7	5732430	5745539	5732868	5745347	-	Cre07.g352900.t1.1	Cre07.g352900.t1.1		5745161,5744816,5744454,5744133,5743862,5743626,5743212,5740919,5740744,5740441,5740139,5739612,5739073,5737821,5737389,5737148,5735831,5735529,5734927,5734419,5733603,5732430	5745539,5744918,5744602,5744246,5744000,5743719,5743412,5741217,5740811,5740589,5740264,5739968,5739466,5738877,5737642,5737274,5736807,5735660,5735194,5734747,5734148,5733351	
chr7	5748824	5760759	5749640	5760609	-	Cre07.g352950.t1.1	Cre07.g352950.t1.1		5760494,5760049,5759792,5759214,5758776,5758078,5757539,5757296,5755809,5755099,5754623,5754283,5753962,5753239,5753046,5752679,5752167,5751880,5751361,5750908,5750699,5750180,5748824	5760759,5760266,5759950,5759498,5758908,5758214,5757667,5757337,5757044,5755396,5754887,5754412,5754066,5753694,5753098,5752784,5752562,5751972,5751673,5751080,5750788,5750263,5749814	
chr7	5761270	5762771	5761587	5761934	+	Cre07.g352976.t1.1	Cre07.g352976.t1.1		5761270,5761824	5761705,5762771	
chr7	5770923	5782709	5773385	5782364	-	Cre07.g353000.t1.2	Cre07.g353000.t1.2		5782358,5782011,5781616,5781399,5781071,5780767,5780121,5779777,5779312,5778897,5775359,5770923	5782709,5782136,5781675,5781426,5781126,5780829,5780540,5779893,5779449,5778996,5778658,5775238	
chr7	5782994	5786379	5783636	5786351	-	Cre07.g353050.t1.2	Cre07.g353050.t1.2		5786328,5786078,5785527,5784661,5783971,5782994	5786379,5786156,5785653,5784963,5784407,5783840	
chr7	5786700	5790255	5787169	5789427	+	Cre07.g353100.t1.1	Cre07.g353100.t1.1		5786700,5787314,5787521,5787758,5788035	5787219,5787392,5787577,5787829,5790255	
chr7	5790580	5792991	5790752	5792091	+	Cre07.g353150.t1.2	Cre07.g353150.t1.2		5790580,5791182	5791034,5792991	
chr7	5793040	5799151	5793484	5798907	+	Cre07.g353200.t1.1	Cre07.g353200.t1.1		5793040,5793769,5794685,5794917,5795378,5795694,5796096,5796789,5797175	5793611,5794370,5794789,5795163,5795524,5795766,5796270,5796835,5799151	
chr7	5799200	5802931	5799290	5802660	+	Cre07.g353230.t1.2	Cre07.g353230.t1.2		5799200,5799611,5800160,5800487,5801100,5801455,5801747,5802285	5799372,5799939,5800244,5800716,5801242,5801525,5801919,5802931	
chr7	5803022	5805175	5803103	5804082	+	Cre07.g353250.t1.2	Cre07.g353250.t1.2		5803022,5803470,5803887	5803329,5803582,5805175	
chr7	5805342	5809779	5806429	5809742	-	MCP22	Cre07.g353300.t1.2		5809547,5809267,5808909,5808471,5808059,5807678,5807232,5806933,5805342	5809779,5809386,5809087,5808594,5808183,5807801,5807330,5806998,5806543	
chr7	5809880	5815012	5811530	5814160	+	Cre07.g353325.t1.1	Cre07.g353325.t1.1		5809880,5810776,5811760,5812418,5812644,5813628,5814160	5809977,5811669,5811845,5812460,5813533,5813713,5815012	
chr7	5815130	5816979	5815759	5816423	+	Cre07.g353350.t1.1	Cre07.g353350.t1.1		5815130,5816276	5816041,5816979	
chr7	5817160	5822771	5817477	5821275	+	Cre07.g353400.t1.1	Cre07.g353400.t1.1		5817160,5817944,5819249,5820331,5820797,5821128	5817762,5819005,5820085,5820565,5820906,5822771	
chr7	5817160	5821991	5817477	5821275	+	Cre07.g353400.t2.1	Cre07.g353400.t2.1		5817160,5817944,5819249,5820331,5820797,5821128	5817762,5819005,5820085,5820565,5820906,5821991	
chr7	5822819	5829894	5822915	5828328	+	ACS3	Cre07.g353450.t1.2		5822819,5823193,5823569,5824080,5824297,5824655,5825169,5825460,5826017,5826378,5826712,5827067,5827496,5827987,5828245	5822955,5823323,5823790,5824119,5824432,5824760,5825276,5825647,5826146,5826527,5826889,5827229,5827717,5828093,5829894	Acetyl-CoA synthetase (EC 6.2.1.1); Acetate-CoA ligase; probable mitochondrial protein based on mass spectrometry identification (QFYTAPTLLR + SLLQLGDAWPR), although organelle targeting predicted as other" by Target-P and iPSORT
chr7	5830810	5838021	5831457	5836639	+	CGLD5A	Cre07.g353500.t1.1		5830810,5831410,5831666,5833096,5834905,5835247	5831004,5831506,5832819,5834583,5835000,5838021	Conserved in the Green Lineage and Diatoms; null-allele mutant was isolated (PMID 29743196)
chr7	5838390	5840101	5838548	5839404	+	SUI1B	Cre07.g353550.t1.2		5838390,5839362	5839079,5840101	putative protein with some similarity to translation initiation factor SUI1
chr7	5840750	5846453	5841161	5844048	+	Cre07.g353555.t1.2	Cre07.g353555.t1.2		5840750,5841072,5843633,5843979	5840887,5843473,5843714,5846453	
chr7	5851540	5856919	5853116	5856716	-	MMP7	Cre07.g353600.t1.2		5856649,5856505,5856201,5855901,5855781,5855466,5855261,5854709,5854449,5854158,5853474,5851540	5856919,5856552,5856230,5856059,5855833,5855713,5855335,5855060,5854560,5854294,5854014,5853223	belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoproteins (cell wall glycoproteins) with a hydroxyproline-rich (HR) domain [PMID: 12034745]
chr7	5851540	5856919	5853116	5856716	-	MMP7	Cre07.g353600.t2.1		5856649,5856505,5856201,5855901,5855685,5855466,5855261,5854709,5854449,5854158,5853474,5851540	5856919,5856552,5856230,5856059,5855713,5855608,5855335,5855060,5854560,5854294,5854014,5853223	belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoproteins (cell wall glycoproteins) with a hydroxyproline-rich (HR) domain [PMID: 12034745]
chr7	5859370	5866521	5860174	5865895	+	Cre07.g353650.t1.1	Cre07.g353650.t1.1		5859370,5859905,5860682,5861689,5862107,5862418,5862740,5863105,5865142	5859636,5860294,5861452,5861871,5862259,5862567,5862908,5865044,5866521	
chr7	5866690	5873248	5867017	5872345	+	Cre07.g353700.t1.2	Cre07.g353700.t1.2		5866690,5867210,5867508,5868225,5868670,5869025,5869792,5870222,5870781,5872345	5867036,5867259,5867780,5868314,5868770,5869526,5869957,5870559,5871587,5873248	
chr7	5873700	5877081	5874048	5876332	+	MMP10	Cre07.g353750.t1.2		5873700,5874197,5874502,5874646,5875074,5875451,5875779,5876302	5874106,5874247,5874531,5874773,5875321,5875525,5876130,5877081	belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoproteins (cell wall glycoproteins) with a hydroxyproline-rich (HR) domain [PMID: 12034745]
chr7	5881843	5883904	5882349	5883072	+	Cre07.g353837.t1.2	Cre07.g353837.t1.2		5881843,5882323,5882998	5882095,5882848,5883904	
chr7	5884018	5888322	5884220	5887599	-	Cre07.g353850.t1.2	Cre07.g353850.t1.2		5888037,5887593,5887307,5886824,5886271,5885864,5885570,5885108,5884018	5888322,5887929,5887433,5886877,5886461,5886014,5885625,5885209,5884790	
chr7	5888443	5893404	5888839	5892470	+	Cre07.g353900.t1.2	Cre07.g353900.t1.2		5888443,5889389,5889616,5889837,5890202,5890472,5890784,5891102,5891463,5891738,5892014	5889229,5889424,5889712,5889948,5890246,5890576,5890867,5891297,5891543,5891860,5893404	
chr7	5893407	5901282	5894121	5901062	-	Cre07.g353950.t1.1	Cre07.g353950.t1.1		5900901,5900626,5900309,5899913,5899613,5899380,5898922,5897932,5897375,5896947,5896628,5893407	5901282,5900745,5900432,5900089,5899684,5899478,5899189,5898782,5897791,5897141,5896801,5896491	Putative DNA repair/5'-3' exonuclease, resembling the Xeroderma pignmentosum group G protein, XPGC, and Rad2 yeast homolog  May exhibit ATP-citrate lyase/succinyl-CoA ligase activity
chr7	5901923	5904789	5901961	5903833	+	Cre07.g354000.t1.2	Cre07.g354000.t1.2		5901923,5902320,5903083	5902125,5902794,5904789	
chr7	5904843	5910274	5904903	5909290	+	Cre07.g354050.t1.1	Cre07.g354050.t1.1		5904843,5909290	5909064,5910274	
chr7	5904843	5910274	5904903	5909290	+	Cre07.g354050.t2.1	Cre07.g354050.t2.1		5904843,5909290	5909060,5910274	
chr7	5911453	5912874	5911571	5912086	+	Cre07.g354075.t1.1	Cre07.g354075.t1.1		5911453,5911973	5911737,5912874	
chr7	5913020	5921352	5913649	5921030	-	HAT4	Cre07.g354100.t1.2		5921004,5920757,5920466,5919995,5919720,5919338,5918992,5918637,5918343,5917823,5917328,5916996,5916506,5916085,5915483,5915086,5914804,5914435,5913020	5921352,5920883,5920531,5920052,5919806,5919435,5919042,5918689,5918406,5917992,5917388,5917168,5916569,5916203,5915549,5915160,5914843,5914553,5914081	GNAT superfamily histone acetyltransferase member, ChromDB HAG341; null-allele mutant was isolated (PMID 29743196)
chr7	5921963	5927804	5922150	5927741	+	MFT22	Cre07.g354150.t1.2		5921963,5922558,5922890,5923321,5923678,5924088,5924316,5924651,5924989,5925364,5925840,5926103,5926814,5927187,5927570	5922336,5922667,5923085,5923461,5923827,5924147,5924375,5924726,5925125,5925567,5925898,5926187,5926991,5927239,5927804	Permease
chr7	5927807	5932292	5928541	5932195	-	GAP2	Cre07.g354200.t1.2		5932152,5931910,5931601,5931018,5930659,5930436,5930083,5929811,5929291,5928915,5927807	5932292,5932026,5931704,5931191,5930736,5930504,5930132,5929886,5929404,5929028,5928646	Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12 or 1.2.1.13); probably cytosolic (lacks N-terminal extension); greatest similarity to cyanobacterial and bacterial glyceraldehyde 3-phosphate dehydrogenase; null-allele mutant was isolated (PMID 29743196)
chr7	5932413	5937624	5932445	5936834	+	PGK2	Cre07.g354250.t1.2		5932413,5932897,5933638,5934058,5934446,5934865,5935390,5935783,5936086,5936427,5936667	5932602,5933387,5933729,5934145,5934529,5934975,5935438,5935875,5936184,5936522,5937624	EC 2.7.2.3, probable cytosolic form; similarity to PGK from Thermosynechococcus (GenBank BAC09820)
chr7	5937747	5940012	5938438	5939639	-	RDP1	Cre07.g354301.t1.1		5939414,5939230,5938959,5937747	5940012,5939346,5939057,5938543	
chr7	5940143	5945234	5940925	5945025	+	CYP743B1	Cre07.g354350.t1.1		5940143,5940408,5940663,5940881,5941493,5941906,5942357,5942698,5942971,5943486,5943766,5944025,5944575,5944878	5940287,5940495,5940766,5940937,5941587,5942148,5942539,5942794,5943360,5943570,5943941,5944141,5944685,5945234	cytochrome P450, unknown function, in CYP711 clan. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan. Belongs to a cluster of three highly similar CYP
chr7	5945283	5950037	5945332	5949601	+	CYP743B2	Cre07.g354400.t1.1		5945283,5945530,5945812,5946041,5946436,5946724,5947101,5947410,5947670,5948125,5948405,5948664,5949154,5949454	5945407,5945617,5945915,5946097,5946530,5946966,5947277,5947506,5947984,5948209,5948580,5948780,5949264,5950037	cytochrome P450, unknown function, in CYP711 clan. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan. Belongs to a cluster of three highly similar CYP
chr7	5950163	5955057	5951064	5954349	+	CYP743B3	Cre07.g354450.t1.2		5950163,5950615,5951009,5951292,5951654,5951962,5952226,5952655,5952928,5953670,5953910,5954349	5950502,5950671,5951093,5951519,5951830,5952058,5952534,5952739,5953220,5953780,5954074,5955057	cytochrome P450, unknown function, in CYP711 clan. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top 100 BLAST hits were all animal sequences. The plant CYP711 clan may share a common ancestor with the animal CYP3/CYP4 clan. Belongs to a cluster of three highly similar CYP
chr7	5955454	5962842	5957217	5962768	-	HSF2	Cre07.g354500.t1.1		5962706,5962583,5962231,5960624,5959724,5959355,5959040,5957792,5955454	5962842,5962645,5962330,5962148,5960478,5959528,5959118,5958356,5957641	There are two HSF genes in genome; involved in stress response regulation; null-allele mutant was isolated (PMID 29743196)
chr7	5964027	5972222	5964377	5972179	-	Cre07.g354550.t1.1	Cre07.g354550.t1.1		5972107,5971891,5971049,5970820,5970446,5969065,5968501,5968258,5968040,5967346,5967196,5966828,5965428,5964841,5964027	5972222,5972022,5971270,5970918,5970625,5970296,5968864,5968359,5968138,5967638,5967232,5967052,5966627,5965320,5964608	
chr7	5972507	5982402	5973787	5982158	-	FAP65	Cre07.g354551.t1.2		5982069,5981443,5981114,5980794,5980427,5979242,5976705,5976162,5972507	5982402,5981752,5981200,5980964,5980617,5980175,5979071,5976533,5976040	
chr7	5983497	6001612	5984103	6001400	-	Cre07.g354600.t1.1	Cre07.g354600.t1.1		6001357,6001227,6000734,6000513,5999814,5999411,5998622,5997449,5996958,5996610,5996270,5995822,5995193,5994799,5993506,5993131,5985206,5983497	6001612,6001282,6000936,6000593,6000258,5999611,5999238,5998430,5997260,5996792,5996383,5996040,5995482,5995007,5994572,5993283,5992932,5985055	
chr7	6001746	6016454	6002008	6016155	+	Cre07.g354650.t1.2	Cre07.g354650.t1.2		6001746,6002410,6003404,6003775,6004159,6004596,6004972,6008270,6008670,6008984,6010415,6011574,6011946,6012450,6012877,6013341	6002176,6003120,6003576,6003931,6004341,6004724,6008090,6008462,6008807,6010248,6011357,6011767,6012195,6012677,6013086,6016454	
chr7	6016746	6020657	6016919	6019308	+	CSC4	Cre07.g354700.t1.1		6016746,6017207,6017654,6017908,6018234,6018656,6019059	6017137,6017498,6017710,6018081,6018408,6018720,6020657	function unknown; homologs in Gonium, not Volvox
chr7	6021140	6024293	6022175	6024157	-	Cre07.g354750.t1.2	Cre07.g354750.t1.2		6024150,6023444,6023060,6022518,6021140	6024293,6023743,6023205,6022677,6022204	
chr7	6024380	6026705	6025330	6026592	-	Cre07.g354800.t1.1	Cre07.g354800.t1.1		6026529,6026313,6025744,6024380	6026705,6026402,6026154,6025435	
chr7	6026758	6035845	6027420	6035453	-	Cre07.g354850.t1.2	Cre07.g354850.t1.2		6035261,6034958,6034590,6034188,6033888,6032555,6032351,6031900,6030896,6030372,6029849,6029446,6029130,6028585,6028300,6027804,6026758	6035845,6035057,6034714,6034347,6034006,6033608,6032397,6032004,6031642,6030626,6030077,6029627,6029267,6028831,6028400,6028043,6027597	
chr7	6036016	6043947	6036399	6043557	+	Cre07.g354900.t1.1	Cre07.g354900.t1.1		6036016,6036644,6036931,6037160,6037452,6037842,6038095,6038872,6039299,6039510	6036485,6036752,6037029,6037323,6037755,6037996,6038784,6039208,6039412,6043947	null-allele mutant was isolated (PMID 29743196)
chr7	6043950	6044885	6044047	6044512	-	Cre07.g354976.t1.1	Cre07.g354976.t1.1		6044773,6044505,6043950	6044885,6044572,6044277	
chr7	6044996	6048115	6045140	6047642	+	Cre07.g355050.t1.2	Cre07.g355050.t1.2		6044996,6045363,6045597,6047034	6045260,6045464,6045816,6048115	
chr7	6046146	6048115	6047047	6047642	+	Cre07.g355050.t3.1	Cre07.g355050.t3.1		6046146,6047034	6046461,6048115	
chr7	6046036	6048115	6047047	6047642	+	Cre07.g355050.t2.1	Cre07.g355050.t2.1		6046036,6047034	6046461,6048115	
chr7	6048120	6051818	6048963	6051572	-	ZIP1	Cre07.g355100.t1.2		6051446,6051249,6049859,6049503,6048120	6051818,6051342,6051091,6049618,6049314	related to plant homologs; physically linked to ZRT5; (CrZIP5); PMID: 15710683; PMID: 16766055
chr7	6052112	6056305	6053725	6055928	-	ZRT5	Cre07.g355150.t1.1		6055730,6055488,6054641,6054319,6052112	6056305,6055581,6055198,6054434,6054070	related to plant homologs; physically linked to ZRT1; PMID: 15710683; PMID: 16766055
chr7	6057666	6063027	6057857	6062317	+	ORC5	Cre07.g355200.t1.1		6057666,6057995,6058204,6058427,6058931,6059293,6059529,6059989,6060422,6060745,6061170,6061485,6061924,6062191	6057905,6058086,6058255,6058556,6059034,6059343,6059630,6060222,6060490,6060943,6061309,6061721,6061995,6063027	Homologous to eukaryotic ORC5, DNA replication control protein
chr7	6063030	6066795	6063987	6066630	-	WEE1	Cre07.g355250.t1.2		6066355,6066011,6065835,6065596,6065287,6064982,6064632,6064274,6063030	6066795,6066156,6065921,6065734,6065434,6065170,6064882,6064478,6064119	WEE1 kinase, CDK inhibitory kinase, dual specificity for serine/threonine and tyrosine
chr7	6067006	6073680	6067450	6073122	+	Cre07.g355300.t1.2	Cre07.g355300.t1.2		6067006,6067765,6068081,6068438,6068901,6069928,6070242,6070566,6070967,6071361,6071669,6072038	6067549,6067824,6068199,6068525,6068998,6069994,6070376,6070667,6071055,6071426,6071782,6073680	Similar to Bestrophin, RFP-TM, chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family that includes Low-CO2-inducible membrane protein LCI11
chr7	6073880	6077335	6074353	6077243	-	Cre07.g355350.t1.2	Cre07.g355350.t1.2		6073880	6077335	
chr7	6077886	6083397	6078315	6083074	+	CDKH1	Cre07.g355400.t1.1		6077886,6078219,6078443,6078646,6079245,6079616,6079890,6080254,6080541,6080748,6081175,6081520,6081955,6082226,6082527,6082911	6078093,6078321,6078504,6079088,6079394,6079693,6080085,6080326,6080600,6080863,6081345,6081625,6082066,6082344,6082684,6083397	Chlamydomonas specific; PVTSIRE motif; ts-lethal mutant was isolated (PMID 29743196)
chr7	6083430	6086485	6084310	6086305	-	Cre07.g355433.t1.1	Cre07.g355433.t1.1		6086267,6085517,6085306,6083430	6086485,6085674,6085378,6084692	
chr7	6086706	6101487	6086745	6101183	+	AGE2	Cre07.g355466.t1.1		6086706,6088303,6089705,6090209,6090894,6091752,6092074,6092507,6092942,6093267,6097633,6098068,6098594,6100507,6101046	6087600,6089513,6089753,6090630,6091529,6091824,6092136,6092641,6093031,6097527,6097833,6098426,6099607,6100831,6101487	A/G-specific adenine glycosylase/endonuclease III.  DNA repair glycosylase involved in base-excision repair.  Oxidizatively damaged G (8-oxoG) can mispair with A and C.
chr7	6101544	6104271	6101659	6102871	+	Cre07.g355500.t1.1	Cre07.g355500.t1.1		6101544,6102132,6102476,6102709	6101754,6102223,6102537,6104271	
chr7	6104576	6109938	6104771	6108995	+	Cre07.g355550.t1.1	Cre07.g355550.t1.1		6104576,6105066,6105711,6106274,6106587,6107245,6107825	6104896,6105171,6105834,6106370,6106911,6107469,6109938	
chr7	6110235	6114623	6110524	6114469	-	NTR3	Cre07.g355600.t1.1		6114445,6114187,6113662,6113166,6112512,6112039,6111567,6110983,6110235	6114623,6114340,6113745,6113430,6112544,6112168,6111665,6111132,6110626	Similar to AtNTRA and AtNTRB targeted to cytosol and mitochondria in Arabidopsis due to alternative initiation of transcription. Apparently no alternative initiation of transcription for this NTR in Chlamy and no N-terminal extension for targeting to the mitochondria. Probable cytosolic localisation.
chr7	6115423	6123615	6116475	6122787	-	AMT6	Cre07.g355650.t1.1		6122920,6122710,6122429,6121983,6121622,6121262,6120809,6120190,6119633,6119184,6118667,6118142,6117451,6115423	6123615,6122802,6122495,6122059,6121659,6121309,6120973,6120316,6119857,6119340,6118750,6118276,6117786,6117066	belongs to AMT1 family [PMID: 15821986], related to Rhesus proteins; (Amt1:6 or Amt1.6)
chr7	6124256	6128816	6124407	6128532	+	Cre07.g355700.t1.2	Cre07.g355700.t1.2		6124256,6124711,6125372,6125616,6126579,6127038,6127380,6127706,6128040,6128442	6124536,6125070,6125409,6126254,6126709,6127123,6127560,6127890,6128132,6128816	
chr7	6128996	6136122	6129418	6134799	+	Cre07.g355750.t1.2	Cre07.g355750.t1.2		6128996,6129395,6129925,6131192,6131621,6132650,6133163,6133924	6129230,6129595,6130520,6131244,6132393,6132778,6133469,6136122	
chr7	6136466	6140217	6136568	6139656	+	Cre07.g355800.t1.1	Cre07.g355800.t1.1		6136466,6137204,6139197	6137070,6139029,6140217	
chr7	6141526	6143655	6142780	6143576	-	Cre07.g355850.t1.2	Cre07.g355850.t1.2		6143319,6143040,6141526	6143655,6143109,6142837	
chr7	6143826	6147427	6144369	6146847	+	Cre07.g355900.t1.1	Cre07.g355900.t1.1		6143826,6144602,6145260,6145663,6146104,6146422,6146762	6144413,6144992,6145332,6145856,6146182,6146518,6147427	
chr7	6147476	6150631	6147522	6149534	+	Cre07.g355950.t1.2	Cre07.g355950.t1.2		6147476,6147861	6147562,6150631	
chr7	6150640	6152785	6151061	6152642	-	Cre07.g356000.t1.2	Cre07.g356000.t1.2		6152587,6150640	6152785,6152221	
chr7	6153496	6158013	6153712	6157542	+	Cre07.g356050.t1.1	Cre07.g356050.t1.1		6153496,6153808,6154045,6154299,6155218,6157098,6157473	6153724,6153881,6154155,6155087,6156692,6157177,6158013	
chr7	6158020	6167625	6158237	6167546	-	Cre07.g356101.t1.1	Cre07.g356101.t1.1		6167371,6165581,6162012,6161296,6161111,6159931,6158020	6167625,6167022,6165409,6161542,6161189,6160842,6159796	
chr7	6167892	6173205	6168304	6172970	-	Cre07.g356150.t1.2	Cre07.g356150.t1.2		6172829,6172573,6171847,6171360,6171020,6170663,6170203,6169741,6169293,6168935,6168646,6167892	6173205,6172664,6172180,6171419,6171142,6170772,6170300,6169834,6169386,6169007,6168698,6168421	
chr7	6173371	6180445	6174479	6179967	-	Cre07.g356200.t1.1	Cre07.g356200.t1.1		6179196,6178509,6173371	6180445,6179003,6178367	
chr7	6181676	6189645	6181766	6188984	+	CYP741A1	Cre07.g356250.t1.1		6181676,6182145,6183119,6183781,6184441,6184796,6185147,6185520,6186991,6187282,6187486,6187883,6188278,6188656,6188895	6181962,6182215,6183211,6183884,6184630,6184867,6185282,6185638,6187108,6187333,6187546,6188038,6188384,6188690,6189645	
chr7	6190606	6194527	6193150	6194342	+	Cre07.g356283.t1.1	Cre07.g356283.t1.1		6190606,6193138	6190803,6194527	
chr7	6194538	6195995	6195619	6195968	-	Cre07.g356316.t1.1	Cre07.g356316.t1.1		6194538	6195995	
chr7	6196830	6202396	6196957	6201508	+	DXS1	Cre07.g356350.t1.1		6196830,6197116,6197243,6197754,6198128,6198431,6199083,6199408,6199742,6200160,6200592,6200938,6201320	6197002,6197152,6197689,6197986,6198244,6198602,6199225,6199529,6199920,6200422,6200762,6201028,6202396	1-deoxy-D-xylulose 5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (CLA1) (DEF), chloroplast precursor
chr7	6202748	6205044	6202859	6204515	+	POC7	Cre07.g356400.t1.2		6202748,6202985,6203144,6203288,6203459,6203923,6204218,6204488	6202911,6203076,6203192,6203363,6203525,6204039,6204289,6205044	Similar to f C. elegans Unc119 and to Pde6delta that transport lipid modified cargos into cilia; Found in basal body proteome [PMID: 15964273]; called HRG4 in mammals. Mutations in mammalian gene involved in cone-rod dystrophy.
chr7	6206487	6220712	6207181	6219834	-	Cre07.g356450.t1.1	Cre07.g356450.t1.1		6220030,6219736,6219220,6218325,6217772,6217559,6216873,6216007,6215502,6215085,6214690,6214419,6209256,6208989,6208681,6207762,6207516,6206487	6220712,6219955,6219586,6219054,6218165,6217626,6217360,6216077,6215701,6215416,6214770,6214523,6214223,6209078,6208816,6208496,6207670,6207391	
chr7	6220777	6239752	6221690	6239097	-	Cre07.g356500.t1.1	Cre07.g356500.t1.1		6239005,6238793,6238232,6237870,6236992,6236460,6236028,6235740,6235409,6235008,6234746,6234254,6233779,6226299,6224087,6223554,6223193,6222250,6222004,6220777	6239752,6238850,6238638,6238065,6237721,6236820,6236298,6235810,6235587,6235303,6234826,6234358,6234053,6233583,6226158,6223896,6223358,6223032,6222158,6221879	
chr7	6242303	6253370	6243405	6252436	+	Cre07.g356550.t1.1	Cre07.g356550.t1.1		6242303,6242738,6242893,6243195,6243468,6244039,6244698,6244946,6245148,6245472,6246133,6246376,6246608,6246959,6247713,6249131,6251143,6251943,6252271	6242621,6242789,6243087,6243408,6243924,6244533,6244816,6245016,6245314,6245776,6246213,6246480,6246822,6247594,6248946,6251000,6251715,6252097,6253370	
chr7	6242303	6253370	6243405	6252436	+	Cre07.g356550.t2.1	Cre07.g356550.t2.1		6242303,6242738,6242893,6243195,6243468,6244039,6244698,6244946,6245148,6245472,6246133,6246376,6246608,6246959,6247713,6249131,6251143,6251943,6252271	6242621,6242789,6243087,6243408,6243924,6244533,6244816,6245016,6245314,6245776,6246213,6246480,6246822,6247594,6248895,6251000,6251715,6252097,6253370	
chr7	6253613	6259944	6253649	6259205	+	Cre07.g356600.t1.2	Cre07.g356600.t1.2		6253613,6254384,6254908,6255220,6255647,6256044,6256519,6256880,6257387,6257981,6258716	6253844,6254582,6255011,6255442,6255723,6256214,6256608,6257043,6257564,6258415,6259944	
chr7	6259993	6262602	6260095	6262089	+	Cre07.g356650.t1.2	Cre07.g356650.t1.2		6259993,6260440,6260840,6261025,6261323,6261620,6262014	6260258,6260617,6260870,6261172,6261373,6261693,6262602	
chr7	6262607	6269672	6263270	6269259	-	Cre07.g356700.t1.1	Cre07.g356700.t1.1		6269472,6269106,6268597,6267688,6266702,6265978,6262607	6269672,6269297,6268645,6268385,6267627,6266453,6265771	
chr7	6269783	6273204	6269908	6272367	+	Cre07.g356750.t1.2	Cre07.g356750.t1.2		6269783,6270960,6271261,6272087	6270763,6271048,6271764,6273204	
chr7	6273217	6278742	6273816	6278538	-	OPR33	Cre07.g356800.t1.1		6278475,6273217	6278742,6278175	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr7	6278930	6284072	6280246	6283655	-	Cre07.g356850.t1.1	Cre07.g356850.t1.1		6283915,6283525,6283301,6283026,6282694,6282447,6281835,6281433,6280716,6278930	6284072,6283655,6283405,6283072,6282748,6282534,6282000,6281549,6280928,6280525	
chr7	6284173	6289474	6284293	6288833	+	Cre07.g356900.t1.2	Cre07.g356900.t1.2		6284173,6285093,6285652,6286142,6286547,6287204,6287470,6288038	6284935,6285471,6285796,6286247,6286926,6287323,6287770,6289474	
chr7	6289537	6298112	6290104	6297956	-	Cre07.g356950.t1.1	Cre07.g356950.t1.1		6297933,6297188,6296904,6296671,6295997,6295759,6295400,6294976,6294586,6293949,6293260,6292888,6292388,6291974,6291598,6290671,6290372,6289537	6298112,6297578,6296962,6296764,6296244,6295854,6295514,6295156,6294721,6294313,6293627,6293124,6292534,6292142,6291677,6291307,6290455,6290145	
chr7	6298597	6304662	6299273	6304337	-	Cre07.g356960.t1.1	Cre07.g356960.t1.1		6304631,6304060,6303778,6302657,6302277,6301926,6301334,6300957,6300696,6300347,6299607,6298597	6304662,6304360,6303815,6303283,6302324,6302117,6301441,6301009,6300738,6300418,6300048,6299401	
chr7	6304853	6307174	6304880	6306759	+	Cre07.g356970.t1.1	Cre07.g356970.t1.1		6304853	6307174	
chr7	6304853	6306694	6304880	6306631	+	Cre07.g356970.t2.1	Cre07.g356970.t2.1		6304853,6306607	6306419,6306694	
chr7	6307184	6312232	6307353	6311589	-	Cre07.g356980.t1.1	Cre07.g356980.t1.1		6312160,6311127,6310824,6310530,6309949,6309788,6309505,6309194,6308944,6308475,6308036,6307738,6307497,6307184	6312232,6311914,6310906,6310644,6310036,6309837,6309611,6309292,6309031,6308697,6308109,6307799,6307533,6307362	
chr7	6312423	6317267	6312510	6316298	+	Cre07.g357000.t1.2	Cre07.g357000.t1.2		6312423,6313579,6314119,6314384,6314664,6315016,6315366,6315696,6315974	6313237,6313861,6314239,6314431,6314809,6315084,6315456,6315761,6317267	
chr7	6318123	6321956	6318246	6321532	+	Cre07.g357033.t1.1	Cre07.g357033.t1.1		6318123,6318892,6319383,6319781,6320229,6320432,6320710,6320999,6321277	6318604,6319099,6319503,6319894,6320308,6320500,6320800,6321070,6321956	
chr7	6318123	6320544	6318246	6320505	+	Cre07.g357033.t2.1	Cre07.g357033.t2.1		6318123,6318892,6319383,6319781,6320229,6320432	6318604,6319099,6319503,6319894,6320308,6320544	
chr7	6323559	6324972	6324191	6324946	-	Cre07.g357100.t1.2	Cre07.g357100.t1.2		6324786,6324600,6323559	6324972,6324665,6324406	
chr7	6325193	6325834	6325251	6325708	+	CYP24	Cre07.g357150.t1.1		6325193	6325834	Cytochrome P45
chr7	6325883	6331224	6326068	6331196	+	Cre07.g357157.t1.2	Cre07.g357157.t1.2		6325883,6326384,6326680,6327034,6327367,6327642,6328241,6328828,6329193,6329475,6330170,6331001	6326281,6326493,6326752,6327090,6327466,6328039,6328438,6328920,6329259,6329936,6330666,6331224	
chr7	6331273	6335012	6331880	6334060	+	UGD1	Cre07.g357200.t1.2		6331273,6332141,6332319,6332580,6333516	6331961,6332201,6332399,6333246,6335012	Protein belonging to the UDP-glucose/GDP-mannose dehydrogenase family; found in the flagellar proteome [PMID: 15998802]
chr7	6335083	6338004	6335152	6337875	+	Cre07.g357250.t1.1	Cre07.g357250.t1.1		6335083,6335825,6336437	6335602,6336270,6338004	
chr7	6338014	6340312	6338584	6340212	-	Cre07.g357300.t1.2	Cre07.g357300.t1.2		6340017,6339680,6339258,6338942,6338014	6340312,6339748,6339305,6338980,6338662	
chr7	6340423	6344225	6340621	6343347	+	GLB1	Cre07.g357350.t1.2		6340423,6340804,6341248,6341799,6342128,6342566,6343271	6340665,6340901,6341354,6341900,6342213,6342670,6344225	homologous to bacterial glnB gene product; Arabidopsis homologue regulates Arginine biosynthesis by interacting with N-acetyl-L-glutamate kinase (PMID: 16545809)
chr7	6344283	6349244	6344404	6348508	+	Cre07.g357400.t1.1	Cre07.g357400.t1.1		6344283,6344610,6344888,6345322,6345740,6346320,6346568,6347130,6348043,6348403	6344449,6344665,6344975,6345446,6346016,6346400,6346925,6347826,6348103,6349244	
chr7	6349249	6355262	6349475	6355137	-	Cre07.g357450.t1.1	Cre07.g357450.t1.1		6355077,6354746,6354371,6354055,6353700,6353317,6353026,6352648,6352016,6351367,6350969,6350603,6350212,6349249	6355262,6354957,6354498,6354115,6353777,6353387,6353158,6352805,6352227,6351707,6351050,6350676,6350326,6350024	
chr7	6355317	6356412	6355397	6356166	-	Cre07.g357486.t1.2	Cre07.g357486.t1.2		6356156,6355317	6356412,6355684	
chr7	6356497	6366172	6357485	6365764	-	Cre07.g357500.t1.1	Cre07.g357500.t1.1		6362749,6361975,6361397,6360317,6359347,6358962,6358398,6356497	6366172,6362526,6361762,6361282,6360078,6359110,6358785,6358214	
chr7	6368755	6377151	6369097	6375932	+	Cre07.g357550.t1.2	Cre07.g357550.t1.2		6368755,6369679,6369896,6370341,6370894,6371183,6371602,6372280,6372586,6372898	6369352,6369710,6369926,6370469,6370965,6371428,6371679,6372400,6372769,6377151	
chr7	6377159	6377704	6377356	6377612	-	Cre07.g357576.t1.1	Cre07.g357576.t1.1		6377159	6377704	
chr7	6377903	6379916	6378011	6379178	+	Cre07.g357600.t1.2	Cre07.g357600.t1.2		6377903,6378174,6378577,6378854	6378092,6378316,6378667,6379916	
chr7	6379919	6382494	6380206	6382261	-	Cre07.g357650.t1.1	Cre07.g357650.t1.1		6381604,6381195,6380778,6380488,6379919	6382494,6381303,6380926,6380583,6380233	
chr7	6382645	6385146	6382738	6384979	+	Cre07.g357700.t1.1	Cre07.g357700.t1.1		6382645,6383575,6384152,6384646,6384844	6383414,6383892,6384501,6384735,6385146	
chr7	6385155	6388944	6385569	6388470	-	Cre07.g357750.t2.1	Cre07.g357750.t2.1		6388704,6388362,6388178,6387975,6387662,6387372,6387126,6386883,6386368,6385983,6385155	6388944,6388588,6388249,6388016,6387784,6387512,6387212,6386936,6386629,6386073,6385768	
chr7	6385039	6388944	6385569	6388470	-	Cre07.g357750.t1.2	Cre07.g357750.t1.2		6388704,6388362,6388178,6387975,6387662,6387372,6387126,6386883,6386368,6385983,6385039	6388944,6388588,6388249,6388016,6387784,6387512,6387212,6386936,6386629,6386073,6385768	
chr7	6388991	6391304	6389532	6391257	-	CCDA1	Cre07.g357800.t1.2		6391119,6390947,6390718,6390341,6389966,6388991	6391304,6391043,6390878,6390612,6390092,6389652	Putative protein involved in Cytochrome c assembly in the chloroplast; putative thiol-disulfide interchange protein
chr7	6391359	6392964	6392474	6392859	-	RPL22	Cre07.g357850.t1.2		6391359	6392964	Cytosolic 60S large ribosomal subunit protein L22
chr7	6393095	6394680	6393388	6393569	+	Cre07.g357876.t1.1	Cre07.g357876.t1.1		6393095	6394680	
chr7	6394765	6400419	6394864	6399222	+	Cre07.g357900.t1.2	Cre07.g357900.t1.2		6394765,6395201,6395342,6395713,6396034,6396373,6396727,6396983,6397405,6397602,6397856,6398207,6398527,6398881,6399120	6395071,6395230,6395451,6395845,6396152,6396525,6396809,6397021,6397484,6397694,6398065,6398371,6398679,6399000,6400419	
chr7	6402489	6406334	6403489	6406131	-	Cre07.g357950.t1.2	Cre07.g357950.t1.2		6405996,6405621,6404199,6403903,6402489	6406334,6405828,6405472,6404031,6403726	
chr7	6406495	6413016	6406739	6412975	+	Cre07.g358001.t1.1	Cre07.g358001.t1.1		6406495,6407057,6407292,6407458,6407654,6407916,6408133,6408394,6408548,6408697,6408963,6409201,6409439,6409799,6410110,6410356,6410735,6411372,6412474,6412719,6412975	6406757,6407164,6407378,6407530,6407808,6408054,6408264,6408434,6408598,6408780,6409118,6409352,6409673,6409997,6410259,6410645,6411303,6412363,6412588,6412867,6413016	
chr7	6413065	6421672	6413357	6421672	+	Cre07.g358050.t1.1	Cre07.g358050.t1.1		6413065,6413275,6413633,6414082,6414336,6414642,6414877,6415207,6415540,6415830,6416517,6416743,6416894,6417367,6417562,6417760,6417905,6418100,6418269,6418498,6418651,6418871,6419089,6419237,6419571,6421222,6421565	6413080,6413489,6413960,6414199,6414471,6414740,6415055,6415368,6415732,6415892,6416662,6416782,6417046,6417474,6417586,6417804,6418017,6418186,6418379,6418542,6418773,6418992,6419170,6419499,6421148,6421441,6421672	
chr8	96	2757	368	1171	+	Cre08.g358100.t1.1	Cre08.g358100.t1.1		96,304,713	242,378,2757	
chr8	4180	5445	5183	5394	-	Cre08.g358126.t1.1	Cre08.g358126.t1.1		4180	5445	
chr8	5676	6507	5735	6354	+	Cre08.g358150.t1.2	Cre08.g358150.t1.2		5676	6507	
chr8	7976	15797	8170	15282	+	Cre08.g358200.t1.1	Cre08.g358200.t1.1		7976,8410,8953,9172,9538,10197,11994,12489,13115,13424,13725,13957,14399,14719,14970	8310,8565,9027,9289,9879,11741,12266,12950,13225,13515,13731,14009,14516,14784,15797	described in AAK14340, next to MCA1 gene
chr8	7976	15797	8170	15282	+	Cre08.g358200.t2.1	Cre08.g358200.t2.1		7976,8410,8953,9172,9538,10197,11994,12489,13115,13957,14399,14719,14970	8310,8565,9027,9289,9879,11741,12266,12950,13225,14009,14516,14784,15797	described in AAK14340, next to MCA1 gene
chr8	16576	21855	16827	20888	+	MCA1	Cre08.g358250.t1.2		16576,17439,17937,18310,19334	17094,17805,18157,19107,21855	PentatricoPeptide Repeat protein, stabilizes petA mRNA
chr8	21895	22805	22544	22746	-	Cre08.g358300.t1.2	Cre08.g358300.t1.2		21895	22805	
chr8	23196	24420	23339	23592	+	Cre08.g358326.t1.1	Cre08.g358326.t1.1		23196	24420	
chr8	24556	30597	25224	30142	+	TDA1	Cre08.g358350.t1.1		24556,25586,26190,27202,27531,28175,28517,28861,29083,29902	25473,25813,27034,27392,28027,28309,28678,28965,29679,30597	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; activates translation of atpA mRNA
chr8	30644	36576	30913	36043	+	Cre08.g358400.t1.1	Cre08.g358400.t1.1		30644,31118,31454,31783,32008,32378,32600,32901,33120,33423,33806,34159,34461,34647,34801	31033,31147,31595,31871,32129,32464,32741,32978,33266,33654,34034,34324,34559,34688,36576	
chr8	30644	36767	30913	36043	+	Cre08.g358400.t2.1	Cre08.g358400.t2.1		30644,31118,31454,31783,32008,32378,32600,32901,33120,33423,33806,34159,34461,34647,34801	31033,31147,31595,31871,32129,32464,32741,32978,33266,33654,34034,34324,34559,34688,36767	
chr8	37126	39096	37234	38518	+	Cre08.g358450.t1.2	Cre08.g358450.t1.2		37126,38518	37796,39096	
chr8	39310	41085	40553	40917	-	Cre08.g358459.t1.2	Cre08.g358459.t1.2		40896,39310	41085,40700	
chr8	448627	450845	449521	449861	+	Cre08.g358500.t1.2	Cre08.g358500.t1.2		448627,449521	448886,450845	
chr8	57327	59635	57959	58917	-	Cre08.g358521.t1.1	Cre08.g358521.t1.1		57327	59635	
chr8	61389	67385	62932	67258	-	CEP5	Cre08.g358522.t1.1		67117,66939,66696,66370,66127,65857,65508,64823,64566,64007,63771,63629,63279,61389	67385,66994,66789,66483,66201,65959,65699,65256,64614,64354,63850,63670,63391,63050	Cysteine endopeptidases (EC 3.4.22), C1A family (papain-type); most similar to insect proteinases possibly involved in defense mechanisms (PMID: 10050046); contains N-terminal cathepsin propeptide inhibitor domain (I29) domain; targeted to secretory pathw
chr8	67506	71927	68114	71465	+	Cre08.g358523.t1.1	Cre08.g358523.t1.1		67506,68045,69368	67814,69065,71927	
chr8	72126	76506	72156	76025	+	Cre08.g358524.t1.1	Cre08.g358524.t1.1		72126,72665,73046,73292,73878,74260,74786,75118,75467,75842	72226,72879,73099,73480,73954,74331,74890,75212,75633,76506	
chr8	76816	81017	76943	79991	+	GPX2	Cre08.g358525.t1.1		76816,77299,77656,77950,78215,78537,78922,79376,79868	77094,77414,77676,77969,78275,78616,79042,79462,81017	Gene model is wrong: third exon must be extende by 17 nt at 3' and 4th exon by 7 nt at 5' to fit EST data; this leads to replacing AA sequence VNYPGLR by ASEUALQKVNYPGLR with Sec residued at position 100 in the corrected sequence
chr8	82148	85550	82249	84789	+	AAA1	Cre08.g358526.t1.1		82148,82469,82820,83065,83381,83871	82378,82675,82927,83182,83634,85550	ADP,ATP carrier protein; belongs to a plant-specific transporter family; most abundantly expressed isoform in a three-member family; null-allele mutant was isolated (PMID 29743196)
chr8	85646	86547	85887	86068	+	Cre08.g358527.t1.1	Cre08.g358527.t1.1		85646	86547	
chr8	86599	91455	86880	91243	-	FAP157	Cre08.g358528.t1.1		91109,90554,90034,89553,89321,88966,88621,88331,86599	91455,90668,90117,89690,89373,89175,88729,88474,87987	
chr8	91510	96825	92092	96793	-	Cre08.g358529.t1.1	Cre08.g358529.t1.1		96087,95803,95336,94953,93766,93072,92579,91510	96825,95912,95531,95095,93970,93559,92728,92407	
chr8	96963	105065	97134	104625	-	OPR113	Cre08.g358530.t1.1		102624,101805,100800,99896,98633,97807,96963	105065,102431,101663,100709,99669,98454,97437	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr8	105206	109497	105248	108505	+	Cre08.g358531.t1.1	Cre08.g358531.t1.1		105206,105418,105927,106223,106477,106810,107111,107725,108389	105321,105471,105997,106269,106555,106917,107266,107878,109497	
chr8	109546	114407	110055	113876	+	Cre08.g358532.t1.1	Cre08.g358532.t1.1		109546,110021,110353,110895,111337,111974,112359,113237,113428,113647,113840	109825,110239,110420,111000,111573,112110,112841,113255,113528,113685,114407	
chr8	114456	120705	114486	117754	+	Cre08.g358534.t1.1	Cre08.g358534.t1.1		114456,114926,115158,115413,115931,116206	114723,115066,115257,115804,116029,120705	
chr8	121924	123755	122690	123699	-	Cre08.g358535.t1.1	Cre08.g358535.t1.1		123583,123054,121924	123755,123510,122690	
chr8	123866	125467	124238	125355	+	Cre08.g358536.t1.1	Cre08.g358536.t1.1		123866,124207,124436,124760,125036,125341	123998,124376,124627,124849,125108,125467	
chr8	125474	131245	125585	130877	-	Cre08.g358537.t1.1	Cre08.g358537.t1.1		130540,129915,129355,129075,128558,128074,127553,127117,126400,126048,125474	131245,130123,129533,129183,128671,128138,127628,127241,126451,126122,125696	
chr8	131377	138883	131522	137537	+	Cre08.g358538.t1.1	Cre08.g358538.t1.1		131377,132136,132733,133109,133530,133877,134377,134929,135373,135824,136178,136647,136926,137366	131933,132215,132809,133191,133637,134023,134475,135025,135432,135880,136340,136713,137078,138883	
chr8	140980	144335	141783	144120	-	Cre08.g358539.t1.1	Cre08.g358539.t1.1		144050,143609,142582,142222,140980	144335,143766,142683,142317,141879	
chr8	145865	148721	145944	147751	+	Cre08.g358540.t1.1	Cre08.g358540.t1.1		145865,146181,146734,147212,147597	146065,146306,146946,147341,148721	
chr8	149786	154617	150486	153626	+	Cre08.g358541.t1.1	Cre08.g358541.t1.1		149786,151525,153300	151437,153199,154617	
chr8	154746	156857	155067	155684	+	Cre08.g358542.t1.1	Cre08.g358542.t1.1		154746,155358	155257,156857	
chr8	157376	169249	157403	168086	+	Cre08.g358543.t1.1	Cre08.g358543.t1.1		157376,162770	162674,169249	
chr8	198000	200241	198156	199824	+	Cre08.g358544.t1.1	Cre08.g358544.t1.1		198000,198618,199059,199239,199635	198502,198923,199145,199411,200241	
chr8	200430	203741	200501	202936	+	Cre08.g358545.t1.1	Cre08.g358545.t1.1		200430,200840,201177,201448,201741	200669,201080,201249,201579,203741	
chr8	203943	207129	205427	206826	-	Cre08.g358546.t1.1	Cre08.g358546.t1.1		206231,203943	207129,205516	
chr8	209797	214029	210730	213906	-	Cre08.g358547.t1.1	Cre08.g358547.t1.1		213880,213539,212998,212100,211061,209797	214029,213652,213084,212780,211756,210730	
chr8	228220	229781	228272	229039	+	Cre08.g358548.t1.1	Cre08.g358548.t1.1		228220,228868	228368,229781	
chr8	231120	233051	231240	232633	+	Cre08.g358549.t1.1	Cre08.g358549.t1.1		231120,232007,232601	231267,232121,233051	May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	235960	243341	236256	242415	+	Cre08.g358552.t1.1	Cre08.g358552.t1.1		235960,236671,237259,237924,238432,238866,239651,240007,240565,242313	236405,236825,237335,238088,238533,239250,239741,240244,240627,243341	May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	243390	249331	244872	247803	+	Cre08.g358553.t1.1	Cre08.g358553.t1.1		243390,244209,244834,245376,245842,246060,246769,247574	243746,244444,245085,245520,245891,246242,247250,249331	
chr8	249344	254319	250692	254025	-	Cre08.g358554.t1.1	Cre08.g358554.t1.1		253803,253339,252932,252503,252045,251534,249344	254319,253422,253052,252639,252294,251657,251170	
chr8	254420	260391	254468	259693	+	Cre08.g358555.t1.1	Cre08.g358555.t1.1		254420,254903,255763,256203,256627,257726,258117,258469,258861,259144,259480	254562,255150,255932,256326,256682,257791,258217,258566,258943,259231,260391	
chr8	260610	261491	260965	261433	+	RPS29	Cre08.g358556.t1.1		260610,260942,261146,261424	260862,261027,261245,261491	Cytosolic 40S small ribosomal subunit protein S29
chr8	260610	261491	260965	261433	+	RPS29	Cre08.g358556.t2.1		260610,260947,261146,261424	260862,261027,261245,261491	Cytosolic 40S small ribosomal subunit protein S29
chr8	262629	267049	263318	266610	-	Cre08.g358557.t1.1	Cre08.g358557.t1.1		266442,266210,265895,265619,265203,264604,263990,262629	267049,266286,265988,265699,265244,264675,264279,263586	
chr8	267240	268211	267698	268076	+	Cre08.g358558.t1.1	Cre08.g358558.t1.1		267240,267919	267727,268211	
chr8	268260	270771	268924	269492	+	Cre08.g358559.t1.1	Cre08.g358559.t1.1		268260,269329	269118,270771	
chr8	270990	278300	271373	277866	+	Cre08.g358560.t1.1	Cre08.g358560.t1.1		270990,271678,272297,272586,273172,273660,274041,274346,274887,275754,276126,276428,276756,277219,277781	271392,271867,272382,272858,273348,273849,274132,274657,275329,275910,276290,276459,277078,277407,278300	
chr8	279290	282105	279607	281248	+	Cre08.g358561.t1.1	Cre08.g358561.t1.1		279290,280034,280254,280769,281085	279838,280097,280438,280887,282105	
chr8	282115	286419	282731	286358	-	CPN20	Cre08.g358562.t1.1		286271,286006,285242,284777,283357,283074,282115	286419,286158,285319,284857,283434,283187,282791	Chaperonin
chr8	286530	300461	286768	298927	+	Cre08.g358563.t1.1	Cre08.g358563.t1.1		286530,287191,287556,288171,288634,289184,289699,290509,290787,291329,291760,292122,292639,293739,294354,297867,298334,298815	286826,287285,287627,288311,288851,289463,289866,290602,290920,291530,291866,292302,292721,293924,294494,298006,298534,300461	May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	300464	310689	301220	310380	-	FAP344	Cre08.g358564.t1.1		310245,309924,309586,309049,308621,308285,307987,307461,307242,306761,306469,306056,305655,305336,305058,303955,303347,303048,302685,302263,300464	310689,310001,309681,309126,308686,308344,308035,307592,307288,306854,306493,306116,305750,305413,305149,304078,303601,303156,302830,302328,301970	
chr8	310772	312309	311469	312191	-	Cre08.g358565.t1.1	Cre08.g358565.t1.1		312104,310772	312309,311661	
chr8	315462	323049	316018	322393	-	Cre08.g358567.t1.1	Cre08.g358567.t1.1		322569,321654,321005,320694,320489,320170,319961,319605,319244,318885,318319,317924,317493,317195,316810,316529,315462	323049,322442,321491,320903,320552,320315,320032,319800,319407,319047,318422,318143,317711,317326,316950,316612,316288	
chr8	315462	323049	316018	322393	-	Cre08.g358567.t2.1	Cre08.g358567.t2.1		322569,321654,321005,320694,320489,320170,319961,319605,319244,318885,318319,317924,317493,317195,316810,316529,315462	323049,322442,321491,320903,320552,320315,320032,319776,319407,319047,318422,318143,317711,317326,316950,316612,316288	
chr8	323454	330049	324527	329647	-	Cre08.g358568.t1.1	Cre08.g358568.t1.1		329272,329008,328659,328227,327862,327527,327031,326272,325817,325427,324871,323454	330049,329052,328774,328326,327975,327606,327219,326572,325894,325609,325020,324671	
chr8	330264	341869	330686	341601	-	Cre08.g358569.t1.1	Cre08.g358569.t1.1		341523,340905,340346,339456,338960,338622,338339,338009,337758,337377,337093,336843,336525,336159,335837,335369,334992,334662,334227,333740,333418,333140,332823,332334,331807,331029,330264	341869,341069,340419,339575,339025,338638,338411,338105,337787,337404,337143,336886,336573,336223,335884,335529,335056,334754,334333,333790,333464,333255,332923,332568,332000,331300,330741	
chr8	342320	347426	342529	346185	+	MCP23	Cre08.g358570.t1.1		342320,342827,343437,344610,345217,345562,345972	342693,342923,344111,344692,345319,345648,347426	
chr8	347579	360499	349379	359700	-	Cre08.g358571.t1.1	Cre08.g358571.t1.1		359658,359401,358867,358202,357920,357672,357323,356831,356417,355999,355683,355161,354826,354641,354403,353990,353701,353291,352927,352624,351795,351446,350614,350069,347579	360499,359544,358940,358273,357967,357761,357399,357072,356507,356144,355812,355285,354871,354665,354485,354037,353800,353403,352948,352730,351814,351566,351181,350350,349470	
chr8	361484	374195	361611	373094	+	Cre08.g358572.t1.1	Cre08.g358572.t1.1		361484,362066,362825,363141,363603,364333,366075,366447,370136,370604,371148,371523,372137,372937	361824,362197,362902,363235,363813,365715,366145,369915,370255,370753,371236,371861,372628,374195	
chr8	374584	379885	374969	378956	+	Cre08.g358573.t1.1	Cre08.g358573.t1.1		374584,375361,376080,376448,376859,377160	375023,375864,376193,376650,376950,379885	
chr8	380198	382613	382035	382306	-	Cre08.g358574.t1.1	Cre08.g358574.t1.1		380198	382613	
chr8	383064	401585	383804	401280	+	Cre08.g358575.t1.1	Cre08.g358575.t1.1		383064,390726,391384,392687,393614,394048,394323,395199,396654,397030,397450,397811,398356,398664,401280	390614,391146,392414,393166,393807,394130,394529,395368,396727,397114,397588,397986,398436,400787,401585	
chr8	401758	406273	402398	406061	-	Cre08.g358576.t1.1	Cre08.g358576.t1.1		406049,405243,404745,401758	406273,405878,404936,404363	
chr8	406404	409875	406603	409181	+	Cre08.g358577.t1.1	Cre08.g358577.t1.1		406404,406732,407339	406615,407130,409875	
chr8	409878	413373	410382	412750	-	Cre08.g358578.t1.1	Cre08.g358578.t1.1		412513,411544,409878	413373,412171,411131	
chr8	414038	419163	414789	418999	-	Cre08.g358579.t1.1	Cre08.g358579.t1.1		418911,418742,418519,417722,417328,416845,416268,415856,415528,415119,414038	419163,418824,418594,417858,417393,416910,416363,415965,415577,415310,414857	
chr8	419295	433079	419351	432172	+	CMP1	Cre08.g358580.t1.1		419295,419723,419842,420048,420422,420910,421309,421720,422573,422904,423624,423876,424326,424716,425028,425403,426021,426567,427006,427393,427710,428302,428797,429414,429771,430222,430570,430926,431285,431785,432156	419657,419769,419881,420134,420493,421036,421463,421785,422648,423043,423689,424038,424396,424859,425122,425503,426135,426705,427096,427527,427843,428411,428902,429532,429884,430289,430706,431100,431469,431918,433079	
chr8	433088	436363	433820	436190	-	Cre08.g358581.t1.1	Cre08.g358581.t1.1		436075,435801,435653,435405,434969,434335,433088	436363,435916,435662,435590,435112,434835,434188	
chr8	436558	438433	437196	437557	-	Cre08.g358582.t1.1	Cre08.g358582.t1.1		438192,436558	438433,437557	
chr8	450948	451893	451029	451615	-	Cre08.g358583.t1.1	Cre08.g358583.t1.1		450948	451893	
chr8	459820	464912	461819	464657	-	Cre08.g358600.t1.1	Cre08.g358600.t1.1		464605,464391,464194,464020,463319,462757,462249,459820	464912,464517,464281,464085,463726,463116,462392,462005	
chr8	452014	459575	452730	458498	+	FAP398	Cre08.g358616.t1.1		452014,452612,453308,453679,454172,454815,456074,456624,457082,457644,458321	452381,453071,453428,453759,454354,455679,456160,456710,457290,457823,459575	Similar to Protein Phosphatase
chr8	465044	468686	465077	468278	+	Cre08.g358650.t1.1	Cre08.g358650.t1.1		465044,465742,466343,467013,467644,468062	465457,465794,466507,467237,467765,468686	
chr8	468699	479313	468904	479146	-	Cre08.g358700.t1.2	Cre08.g358700.t1.2		477895,477629,477353,475869,475469,474964,474449,473668,473300,473081,472642,472012,471326,470745,469996,469488,468699	479313,477690,477392,476525,475675,475094,474620,474322,473528,473148,472751,472401,471880,471089,470562,469759,469229	
chr8	479368	486943	479683	486784	-	ZMYND10	Cre08.g358751.t1.1		486721,486557,486273,485865,485495,485182,484705,484258,483830,483358,482958,482468,481991,481621,481180,480751,479368	486943,486622,486329,485936,485638,485308,484810,484400,483927,483483,483023,482554,482074,481752,481407,480912,480397	
chr8	487074	493235	487252	492300	+	Cre08.g358800.t1.2	Cre08.g358800.t1.2		487074,487858,488148,488633,488943,489306,489667,490240,490577,491153,491577,491833,492277	487671,487924,488205,488672,489158,489440,490097,490369,490649,491203,491647,491987,493235	
chr8	493240	498423	494431	498147	-	FAP386	Cre08.g358850.t1.2		498060,497782,497423,497021,496666,496294,495973,495495,495115,493240	498423,497829,497512,497094,496750,496394,496031,495529,495185,494816	Cr specific protein
chr8	498608	502283	499288	502174	-	Cre08.g358900.t1.2	Cre08.g358900.t1.2		501982,501718,501440,501081,500804,500433,500058,499512,498608	502283,501767,501516,501121,500818,500528,500138,499580,499390	
chr8	502394	508918	502721	507921	+	Cre08.g358950.t1.1	Cre08.g358950.t1.1		502394,503947,504318,505210,505599,506010,506419,507011,507401,507738	503381,504003,505064,505284,505730,506112,506632,507131,507484,508918	
chr8	502394	508918	502721	507921	+	Cre08.g358950.t2.1	Cre08.g358950.t2.1		502394,503947,504318,505210,505599,506010,506419,507011,507401,507738	503357,504003,505064,505284,505730,506112,506632,507131,507484,508918	
chr8	509125	512533	509790	512394	-	Cre08.g359000.t1.2	Cre08.g359000.t1.2		512136,510954,509125	512533,511708,510700	
chr8	509125	510463	509790	510433	-	Cre08.g359000.t2.1	Cre08.g359000.t2.1		509125	510463	
chr8	512798	516833	513510	516000	-	Cre08.g359051.t1.1	Cre08.g359051.t1.1		516605,516322,515981,515558,515329,514477,512798	516833,516412,516080,515616,515413,515129,514038	
chr8	519423	527304	519732	526486	+	Cre08.g359100.t1.2	Cre08.g359100.t1.2		519423,520071,520776,521825,522378,523045,523913,524466,525302,525932,526315	519831,520151,520892,521941,522491,523125,524095,524597,525459,525983,527304	
chr8	527989	529124	528140	528527	+	Cre08.g359133.t1.1	Cre08.g359133.t1.1		527989,528527	528361,529124	
chr8	530246	533512	530956	533258	-	Cre08.g359166.t1.1	Cre08.g359166.t1.1		533224,532862,530246	533512,533089,530956	
chr8	534213	538334	534578	538001	+	Cre08.g359200.t1.1	Cre08.g359200.t1.1		534213,534799,535556,536594	534661,535270,536395,538334	
chr8	538341	541822	539174	541394	-	Cre08.g359250.t1.2	Cre08.g359250.t1.2		541252,541112,540805,540471,540212,539656,538341	541822,541171,540973,540604,540318,539730,539309	
chr8	541927	548022	542793	547557	-	PHO1	Cre08.g359300.t1.2		547919,547298,546921,546626,546352,546014,545742,545510,545159,544698,544196,543753,543491,543181,541927	548022,547583,547035,546717,546464,546160,545832,545583,545271,544899,544343,543918,543542,543288,542898	Similar to C-terminal half of 145 kDa, phosphate-deficiency inducible alkaline phosphatase, encoded by phoA, from Synechococcus sp. PCC 7942.
chr8	548901	558182	549639	558146	-	CARB1	Cre08.g359350.t1.2		558140,557555,557049,556544,556207,555752,555281,554696,554146,552091,551723,551278,550677,550155,549834,548901	558182,557803,557159,556675,556318,555816,555367,554809,554274,552201,551767,551370,550739,550265,549896,549696	Carbamoyl-phosphate synthase; acetyl-CoA carboxylase, biotin carboxylase
chr8	559083	560874	559859	560457	+	Cre08.g359400.t1.2	Cre08.g359400.t1.2		559083,559777	559656,560874	
chr8	561021	567072	562205	566796	-	Cre08.g359450.t1.2	Cre08.g359450.t1.2		566092,565415,563871,563361,561021	567072,565703,564015,563467,562940	
chr8	567289	576592	568154	576276	-	Cre08.g359500.t1.1	Cre08.g359500.t1.1		576183,575449,575042,574457,574108,573591,573239,572623,572354,572112,571645,570901,570267,569210,568596,567289	576592,575500,575174,574547,574140,573673,573305,572977,572448,572161,571745,571340,570401,569324,568741,568301	
chr8	577073	581944	577372	580334	+	Cre08.g359550.t1.1	Cre08.g359550.t1.1		577073,579920	579751,581944	
chr8	581993	590495	582379	589854	+	Cre08.g359567.t1.2	Cre08.g359567.t1.2		581993,582555,582928,585931,586740,588525	582402,582719,584716,586553,586959,590495	
chr8	581993	590495	582379	589854	+	Cre08.g359567.t2.1	Cre08.g359567.t2.1		581993,582555,582928,585934,586740,588525	582402,582719,584716,586553,586959,590495	
chr8	590693	598671	591300	596665	+	CSE22	Cre08.g359600.t1.2		590693,591937,592592,593412,593938,594370,594844,595188,595637,596066,596500	591709,592187,593215,593708,594069,594644,594910,595355,595759,596179,598671	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	599241	604902	600404	604622	-	Cre08.g359650.t1.2	Cre08.g359650.t1.2		604239,603455,603039,602388,601906,601460,600993,599241	604902,603971,603095,602443,602001,601571,601142,600686	
chr8	605057	611202	605883	610994	-	LAS1	Cre08.g359700.t1.2		610690,610163,609432,608918,608599,607906,607512,606815,606457,605057	611202,610236,609495,609068,608709,608044,607580,606966,606574,606060	lipoate biosynthesis, possible mitochondrial precursor
chr8	611324	613867	611353	613805	+	RPS9	Cre08.g359750.t1.2		611324,611668,612184,613336,613771	611381,611951,612281,613464,613867	Cytosolic 40S small ribosomal subunit protein S9
chr8	611324	614324	611353	613805	+	RPS9	Cre08.g359750.t2.1		611324,611668,612184,613336,613771	611381,611951,612281,613464,614324	Cytosolic 40S small ribosomal subunit protein S9
chr8	614327	620212	614452	620022	-	Cre08.g359800.t1.2	Cre08.g359800.t1.2		619883,619640,619193,618843,618350,617994,615346,614842,614327	620212,619746,619361,619081,618611,618109,617762,615168,614630	
chr8	620323	623104	620696	622402	+	FBB11	Cre08.g359850.t1.1		620323,621084,621399,621786,622190	620951,621261,621571,621876,623104	Conserved protein of unknown function, found in ciliated organisms; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation; Coiled-Coil Protein
chr8	623303	634583	624260	632513	+	Cre08.g359900.t1.1	Cre08.g359900.t1.1		623303,624215,624451,625028,625429,625608,625922,626522,627107,627620,630485	624099,624280,624595,625084,625485,625732,626044,626669,627276,630353,634583	
chr8	634587	637472	635136	637374	-	Cre08.g359950.t1.2	Cre08.g359950.t1.2		637287,636852,636415,636015,635695,634587	637472,636943,636451,636068,635775,635199	
chr8	637656	663282	638989	662824	-	Cre08.g360001.t1.1	Cre08.g360001.t1.1		662794,661687,659419,655566,654766,654276,652679,648716,648244,646170,644577,642713,642334,641375,640543,637656	663282,662621,661098,659346,655350,654651,654002,652609,648640,648050,645932,644348,642518,642025,641152,640392	
chr8	664489	675382	665243	674687	-	DUR1	Cre08.g360050.t1.1		674662,674332,673964,673686,673138,672615,672254,671880,671075,670766,670286,669919,669459,669146,668742,668363,667845,667450,666953,666353,665759,664489	675382,674552,674140,673751,673398,672788,672406,672017,671182,670882,670454,670022,669708,669264,668883,668460,668107,667657,667162,666655,666082,665453	urea carboxylase [EC:6.3.4.]; Allophanate hydrolase subunit 2; catalyses first reaction of ATP:urea amidolyase; homologous to C-terminus of yeast protein, whose N-terminus is homologous to DUR2, upstream divergent; in green algae, the two activities are separated at the protein level
chr8	664489	675002	665243	674687	-	DUR1	Cre08.g360050.t2.1		674662,674332,673964,673686,673138,672615,672254,671880,671075,670766,670286,669919,669459,669146,668742,668363,667845,667450,666953,666353,665759,664489	675002,674552,674140,673751,673398,672788,672406,672017,671182,670882,670454,670022,669708,669264,668883,668460,668107,667657,667162,666655,666082,665453	urea carboxylase [EC:6.3.4.]; Allophanate hydrolase subunit 2; catalyses first reaction of ATP:urea amidolyase; homologous to C-terminus of yeast protein, whose N-terminus is homologous to DUR2, upstream divergent; in green algae, the two activities are separated at the protein level
chr8	676563	681044	676675	680420	+	DUR2	Cre08.g360100.t1.2		676563,677184,677822,678278,678503,678827,679237,679818,680216	677003,677447,678040,678357,678582,678972,679364,679970,681044	allophanate hydrolase [EC:3.5.1.54]; catalyses second reaction of ATP:urea amidolyase; homologous to N-terminal domain of yeast protein, whose C-terminal domain (carboxylase activity) is homologous to DUR2, upstream divergent; in green algae, the two activities are separated at the protein level (Harris, p243)
chr8	681103	685632	681447	684706	+	Cre08.g360150.t1.1	Cre08.g360150.t1.1		681103,682834,684468	682434,684014,685632	
chr8	686320	690874	687083	690129	+	DUR3A	Cre08.g360200.t1.2		686320,687362,687697,688056,689027,689709	687159,687458,687872,688821,689510,690874	Na+/solute symporter family
chr8	691523	697721	691758	696393	+	DUR3B	Cre08.g360250.t1.2		691523,691911,692125,692385,693251,694211,694748,695102,695525,696036	691825,691937,692194,692560,694026,694530,694901,695206,695638,697721	Na+/solute symporter family
chr8	697724	701959	698287	701428	-	Cre08.g360300.t1.2	Cre08.g360300.t1.2		701313,701025,700519,700095,699328,698985,698631,697724	701959,701122,700566,700251,699898,699060,698759,698374	(SDR), linked on same scaffold to genes involved in urea/arginine metabolism
chr8	702080	708851	702290	707963	+	ADI1	Cre08.g360350.t2.1		702080,702979,703524,703724,704094,704929,705365,705695,706148,706553,706903,707238,707879	702440,703128,703604,703792,704188,705008,705408,705775,706216,706651,706952,707421,708851	arginine deiminase is part of the arginine dihydrolase pathway, allowing use of arginine as a carbon source in anaerobic conditions (PMID: 12450748)
chr8	702070	708851	702290	707963	+	ADI1	Cre08.g360350.t1.1		702070,702189,702979,703524,703724,704094,704929,705365,705695,706148,706553,706903,707238,707879	702117,702440,703128,703604,703792,704188,705008,705408,705775,706216,706651,706952,707421,708851	arginine deiminase is part of the arginine dihydrolase pathway, allowing use of arginine as a carbon source in anaerobic conditions (PMID: 12450748)
chr8	708984	721389	710139	721104	-	ERM1	Cre08.g360400.t1.1		720976,720464,720225,719884,719683,719504,719236,718796,718372,717844,716964,716575,716253,715969,715587,715305,715048,714669,714519,714326,714073,713701,713302,712952,712616,712443,712129,711772,711430,710986,710672,708984	721389,720551,720282,719937,719726,719545,719340,718912,718569,718202,717666,716727,716336,716010,715778,715372,715138,714727,714540,714361,714169,713825,713451,713122,712713,712479,712167,711890,711517,711082,710784,710472	transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration); belongs to a cluster of 4 closely linked and related Chlamydomonas ERM genes
chr8	721441	722149	721786	722054	-	Cre08.g360444.t1.2	Cre08.g360444.t1.2		721441	722149	
chr8	722250	734671	722330	732736	+	Cre08.g360450.t1.1	Cre08.g360450.t1.1		722250,722574,723131,723475,723664,724023,724818,726709,727088,727441,728928,729408,729713,730065,731136,731597,732174,732586	722440,722688,723250,723566,723850,724598,726422,726829,727152,728799,729173,729539,729905,730798,731342,731941,732293,734671	
chr8	734720	746221	734816	745543	+	ERM2	Cre08.g360500.t1.1		734720,735038,735442,735645,735887,736159,736542,736980,737316,737601,737896,738208,738398,739462,739723,740036,740314,740568,740652,740829,741076,741274,741518,741827,742117,742482,743641,743961,744208,744645,744954,745240	734826,735155,735529,735702,735960,736179,736706,737072,737438,737705,738012,738297,739213,739548,739842,740149,740381,740586,740672,740887,741097,741309,741614,741951,742266,742652,743738,743997,744365,744733,745006,746221	transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration); belongs to a cluster of 4 closely linked and related Chlamydomonas ERM genes
chr8	746224	752199	746790	751793	-	ERM3	Cre08.g360550.t1.1		752030,751134,750823,750370,749899,749361,749008,748692,748159,747944,747595,747360,746999,746224	752199,751808,750902,750490,750000,749457,749093,748791,748215,748003,747678,747426,747102,746880	fusion : ERD4 related membrane protein and copper-containing nitrite reductase. N-terminus: transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration); belongs to a cluster of 4 closely linked and related Chlamydomonas ERM genes; C-terminus: membrane-bound copper-containing nitrite reductase, bacterial type
chr8	752295	764059	752424	763859	-	Cre08.g360564.t1.2	Cre08.g360564.t1.2		763824,763439,763055,762751,762413,762175,761811,761527,760801,760583,760399,759958,759535,759136,758872,758447,757898,757228,756959,756762,756290,755881,755573,755173,754806,754510,754259,753950,753406,753052,752295	764059,763536,763102,762817,762443,762228,761915,761643,761259,760690,760445,760267,759621,759177,758949,758560,757965,757377,756995,756782,756386,756005,755623,755271,754976,754607,754295,754107,753593,753122,752904	
chr8	764864	781429	766212	781196	-	ERM4	Cre08.g360600.t1.1		781149,780887,780327,780086,779146,778349,778088,777615,777220,776801,776441,775812,775192,774612,774202,773898,773591,773094,772764,772547,772147,771720,771413,770911,770597,770222,769821,769502,769259,769032,768662,768261,767845,767422,766754,764864	781429,780967,780414,780143,779240,778816,778213,777731,777327,777081,776603,775958,775377,774755,774288,773939,773668,773249,772886,772591,772214,771869,771470,771007,770721,770371,769991,769599,769295,769070,768780,768348,767962,767528,766933,766413	transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration); belongs to a cluster of 4 closely linked and related Chlamydomonas ERM genes
chr8	782334	783939	783316	783838	-	Cre08.g360650.t1.2	Cre08.g360650.t1.2		783470,782334	783939,783316	
chr8	791110	798837	791203	798712	+	Cre08.g360700.t1.1	Cre08.g360700.t1.1		791110,791858,792769,793763,794181,794595,794969,798505	791515,792465,792892,793844,794244,794702,795371,798837	
chr8	808838	811979	808943	811430	-	Cre08.g360750.t1.1	Cre08.g360750.t1.1		811361,811051,809760,809435,808838	811979,811110,810389,809509,809090	
chr8	812487	820059	814679	819917	-	Cre08.g360801.t1.1	Cre08.g360801.t1.1		819680,818932,818362,817832,817341,816711,816074,815779,815451,812487	820059,819003,818565,817939,817472,816877,816417,815834,815551,814845	
chr8	820180	829941	820357	828532	+	Cre08.g360850.t1.2	Cre08.g360850.t1.2		820180,821059,821489,822049,822379,822737,824962,825666,826336,826890,827352,827810,828215	820783,821269,821692,822110,822479,823180,825193,825817,826699,827060,827432,827897,829941	
chr8	832485	833059	832575	833014	-	RPS15	Cre08.g360900.t1.2		832485	833059	Cytosolic 40S small ribosomal subunit protein S15
chr8	833180	838071	833271	836187	+	Cre08.g360950.t1.1	Cre08.g360950.t1.1		833180,833415,833762,834122,834770,835377,835649,836074	833318,833468,833816,834190,834859,835463,835778,838071	
chr8	837954	845319	837975	844683	-	Cre08.g361000.t1.1	Cre08.g361000.t1.1		844626,844128,843712,843277,842953,842416,841640,841288,840991,840318,839685,839286,838764,838180,837954	845319,844166,843769,843379,843002,842591,841730,841365,841055,840753,839741,839396,838864,838246,838022	
chr8	838074	845319	838159	844683	-	Cre08.g361000.t2.1	Cre08.g361000.t2.1		844626,844128,843712,843277,842953,842416,841640,841288,840991,840318,839685,839286,838764,838074	845319,844166,843769,843379,843002,842591,841730,841365,841055,840753,839741,839396,838864,838246	
chr8	845374	848079	845859	847956	-	CNX3	Cre08.g361050.t1.2		847833,847360,847134,846461,845374	848079,847695,847238,846541,846132	MoaC family; molybdopterin biosynthesis enzyme
chr8	848210	850031	848331	849048	+	Cre08.g361063.t1.2	Cre08.g361063.t1.2		848210,848524,848922	848374,848564,850031	
chr8	850034	853189	850054	853086	-	Cre08.g361100.t2.1	Cre08.g361100.t2.1		852671,852282,851924,851377,850798,850442,850111,850034	853189,852416,852004,851462,850920,850524,850169,850065	
chr8	849704	853189	849811	853086	-	Cre08.g361100.t1.2	Cre08.g361100.t1.2		852671,852282,851924,851377,850798,850442,850111,849704	853189,852416,852004,851462,850920,850524,850169,849816	
chr8	853242	860989	854527	860830	-	Cre08.g361150.t1.2	Cre08.g361150.t1.2		860698,860337,859863,859355,858895,857385,856847,856507,856072,855648,853242	860989,860413,859911,859519,859064,857496,856978,856602,856197,855731,855019	
chr8	861126	868351	861429	867481	+	ODA10	Cre08.g361200.t1.2		861126,862402,862652,862965,863380,863846,864201,864504,864901,865696,866206,866552,867067,867373	861703,862481,862708,863060,863597,863942,864293,864635,865230,865770,866280,866687,867122,868351	
chr8	861126	868651	861429	867481	+	ODA10	Cre08.g361200.t2.1		861126,862402,862652,862965,863380,863846,864201,864504,864901,865696,866206,866552,867067,867373	861703,862481,862708,863060,863597,863942,864293,864635,865230,865770,866280,866687,867122,868651	
chr8	868855	877038	869739	876726	-	Cre08.g361250.t1.1	Cre08.g361250.t1.1		876714,875342,874829,874502,873981,873277,872578,871137,870760,870186,868855	877038,876265,874939,874570,874155,873532,872740,872228,870876,870301,869893	
chr8	877149	881100	877364	880405	+	Cre08.g361300.t1.1	Cre08.g361300.t1.1		877149,878007,878443,878854,879340,879838,880178	877655,878183,878550,879056,879510,879902,881100	
chr8	881108	887668	881658	887432	-	Cre08.g361350.t1.2	Cre08.g361350.t1.2		887283,886826,886418,886100,885590,884475,883481,881108	887668,886937,886501,886152,885706,884969,884110,883213	
chr8	888006	897578	889628	897236	-	Cre08.g361400.t1.2	Cre08.g361400.t1.2		897197,896423,894817,894566,894195,893788,893391,888006	897578,897097,896161,894638,894366,893898,893512,893157	
chr8	897633	905788	898175	905587	-	Cre08.g361450.t1.2	Cre08.g361450.t1.2		905433,905102,904922,903668,903190,902778,902089,900076,897633	905788,905276,904973,904497,903250,902943,902512,901686,899859	
chr8	906249	908805	906374	908133	+	Cre08.g361500.t1.2	Cre08.g361500.t1.2		906249,907550,908000	906638,907623,908805	
chr8	908843	913168	909074	912655	-	Cre08.g361551.t1.1	Cre08.g361551.t1.1		913099,912930,912517,912127,911425,910981,910666,910201,908843	913168,913012,912679,912218,911679,911091,910768,910422,909722	
chr8	913220	917468	913796	917213	-	Cre08.g361600.t1.1	Cre08.g361600.t1.1		917024,916845,916379,915955,915460,915218,915044,914508,913220	917468,916924,916541,916046,915708,915328,915146,914696,914264	
chr8	917669	923092	917749	922172	+	Cre08.g361650.t1.1	Cre08.g361650.t1.1		917669,918080,918481,919266,919656,920078,921276,921599,922019	917902,918198,918931,919366,919904,920188,921381,921850,923092	
chr8	923139	926830	923306	925988	+	Cre08.g361700.t1.2	Cre08.g361700.t1.2		923139,923466,925775	923372,925496,926830	
chr8	926832	931118	928020	930969	-	Cre08.g361750.t1.1	Cre08.g361750.t1.1		930943,930532,929906,929589,928648,928396,926832	931118,930668,930333,929651,929304,928437,928116	
chr8	931183	935338	931913	935123	-	RPC31	Cre08.g361800.t1.2		934979,934643,934233,933462,932932,932433,931183	935338,934696,934305,933732,933008,932614,931988	
chr8	935439	937613	935535	937266	+	Cre08.g361850.t1.2	Cre08.g361850.t1.2		935439,936019,936371,936659,937107	935722,936117,936454,936864,937613	
chr8	937978	945018	938856	944450	-	Cre08.g361900.t1.2	Cre08.g361900.t1.2		944664,944429,943842,943313,943003,942525,942289,941794,941514,940928,940302,939735,937978	945018,944450,944223,943649,943071,942606,942360,941968,941589,941008,940617,939851,939534	
chr8	952849	956607	953355	953662	+	Cre08.g361925.t1.1	Cre08.g361925.t1.1		952849	956607	
chr8	956663	974818	958665	974579	-	FAP153	Cre08.g361950.t1.1		974505,974267,974043,973781,972993,972589,972416,972131,971811,971251,971014,970805,970598,970195,969986,969769,969554,969265,968955,968739,968486,968212,967411,967024,966405,966139,965864,964638,964478,963865,963617,963415,963122,962945,962694,962405,962121,961916,961386,961119,960927,960707,960361,960088,959820,959416,959174,956663	974818,974321,974138,973908,973258,972878,972481,972285,972024,971292,971135,970882,970679,970492,970107,969832,969683,969429,969109,968854,968653,968286,967703,967264,966895,966274,966026,965765,964539,964325,963737,963510,963265,963000,962814,962569,962289,962016,961795,961290,960983,960833,960503,960244,959974,959482,959277,959019	Similar to a small family of Flagellar Associated membrane Proteins and closely linked with them on Chromosome_8; null-allele mutant was isolated (PMID 29743196)
chr8	956663	974818	958665	974579	-	FAP153	Cre08.g361950.t2.1		974505,974267,974043,973781,972993,972589,972416,972131,971811,971251,971014,970805,970598,970195,969986,969769,969554,969265,968955,968739,968486,967411,967024,966405,966139,965864,964638,964478,963865,963617,963415,963122,962945,962694,962405,962121,961916,961386,961119,960927,960707,960361,960088,959820,959416,959174,956663	974818,974321,974138,973908,973258,972878,972481,972285,972024,971292,971135,970882,970679,970492,970107,969832,969683,969429,969109,968854,968653,967703,967264,966895,966274,966026,965765,964539,964325,963737,963510,963265,963000,962814,962569,962289,962016,961795,961290,960983,960833,960503,960244,959974,959482,959277,959019	Similar to a small family of Flagellar Associated membrane Proteins and closely linked with them on Chromosome_8; null-allele mutant was isolated (PMID 29743196)
chr8	975143	980358	975648	979838	-	Cre08.g361984.t1.2	Cre08.g361984.t1.2		979975,979817,979229,978701,978393,977910,977674,977161,976879,976231,975143	980358,979838,979610,979037,978461,977991,977745,977335,976954,976311,975943	
chr8	981354	996158	983407	995687	-	FAP72	Cre08.g362000.t1.2		995949,995830,995592,995387,995177,994783,994560,994338,994121,993831,993521,993302,993044,992156,991768,991149,990887,990612,989372,989212,988583,988335,988138,987845,987680,987376,987087,986803,986595,986036,985770,985590,985371,985098,984825,984557,984159,983917,981354	996158,995871,995713,995464,995258,995080,994681,994401,994250,993995,993675,993417,993211,992448,992008,991639,991022,990774,990502,989273,989049,988455,988233,987988,987735,987496,987251,986971,986698,986433,985941,985646,985497,985240,984981,984711,984225,984020,983761	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr8	996233	999358	996376	999122	-	FAP408	Cre08.g362019.t1.1		999048,998811,998587,998325,997639,997238,997043,996759,996233	999358,998865,998682,998452,997904,997527,997108,996913,996641	
chr8	1004379	1008308	1007327	1008226	-	Cre08.g362036.t1.2	Cre08.g362036.t1.2		1008220,1008090,1007615,1004379	1008308,1008130,1007787,1007401	
chr8	1016096	1034937	1016322	1034044	+	FAP49	Cre08.g362050.t1.2		1016096,1016571,1016967,1017410,1018749,1019847,1020270,1020465,1020718,1021493,1021651,1021895,1022101,1022297,1022695,1022970,1023121,1023376,1023658,1023946,1024148,1024445,1024892,1025262,1025921,1026168,1026440,1027672,1027861,1028367,1028572,1028843,1028989,1029141,1029383,1029628,1029902,1030616,1030847,1031355,1031662,1031993,1032250,1032532,1032808,1033129,1033387,1033660	1016396,1016619,1017062,1017537,1019014,1020136,1020335,1020619,1020931,1021534,1021772,1021972,1022182,1022594,1022816,1023033,1023250,1023540,1023833,1024061,1024315,1024740,1025120,1025794,1026056,1026330,1027552,1027730,1028243,1028487,1028667,1028905,1029069,1029196,1029503,1029792,1030070,1030716,1031259,1031526,1031718,1032119,1032392,1032688,1032954,1033203,1033490,1034937	Flagella Associated Membrane Protein with PAS sensory domain; found in the flagellar proteome [PMID: 15998802]; FAP153 likely is a part of FAP49.
chr8	1035576	1036917	1035732	1036313	+	Cre08.g362076.t1.1	Cre08.g362076.t1.1		1035576,1036182	1035766,1036917	
chr8	1038786	1056758	1039019	1056192	+	FAP154	Cre08.g362100.t1.1		1038786,1039276,1039689,1040341,1040792,1041170,1041592,1041788,1042055,1042793,1042951,1043236,1043442,1043631,1044033,1044314,1044465,1044720,1045003,1045294,1045496,1045793,1046193,1046561,1047240,1047488,1047760,1049000,1049143,1049689,1049879,1050101,1050241,1050488,1050760,1051012,1051292,1051586,1051816,1052316,1052600,1052784,1053072,1053312,1053669,1053951,1054187,1055805	1039045,1039321,1039784,1040468,1041057,1041459,1041657,1041942,1042268,1042834,1043072,1043313,1043523,1043928,1044154,1044377,1044594,1044884,1045178,1045409,1045663,1046088,1046433,1047105,1047375,1047650,1048896,1049046,1049561,1049809,1049974,1050163,1050321,1050543,1050880,1051176,1051460,1051689,1052183,1052487,1052656,1052910,1053214,1053468,1053815,1054025,1054290,1056758	Similar to Flagellar Associated Protein FAP154 with PAS sensory domain that was found in the flagellar proteome; null-allele passenger mutation was isolated (PMID 29743196)
chr8	1059696	1076517	1059855	1075314	+	FAP361	Cre08.g362150.t1.1		1059696,1060448,1060706,1061105,1061517,1061936,1062135,1062400,1063178,1063345,1063599,1063805,1063994,1064397,1064680,1064831,1065086,1065370,1065641,1065847,1066132,1066549,1066918,1067581,1067826,1068098,1069309,1069498,1070022,1070213,1070445,1070585,1070925,1071180,1071426,1071706,1071998,1072228,1072735,1073023,1073200,1073482,1073727,1074043,1074324,1074588,1074939	1059888,1060543,1060833,1061370,1061806,1062001,1062289,1062613,1063219,1063466,1063676,1063886,1064291,1064518,1064743,1064960,1065250,1065545,1065756,1066014,1066427,1066789,1067450,1067716,1067988,1069189,1069367,1069895,1070142,1070308,1070507,1070665,1070980,1071300,1071590,1071874,1072101,1072601,1072906,1073079,1073326,1073624,1073883,1074189,1074398,1074691,1076517	Flagellar Associated Protein with PAS sensory domain, found in the flagellar proteome
chr8	1076520	1082815	1077417	1082648	-	Cre08.g362200.t1.1	Cre08.g362200.t1.1		1080533,1079806,1079595,1076520	1082815,1080354,1079678,1079304	
chr8	1082916	1090152	1083128	1089287	+	Cre08.g362250.t1.1	Cre08.g362250.t1.1		1082916,1085011,1085963,1086200	1084826,1085832,1086046,1090152	null-allele mutant was isolated (PMID 29743196)
chr8	1090206	1095229	1090353	1094797	+	Cre08.g362300.t1.1	Cre08.g362300.t1.1		1090206,1091636,1092297,1092553	1091436,1092172,1092380,1095229	
chr8	1095356	1099527	1095503	1098150	+	Cre08.g362350.t1.1	Cre08.g362350.t1.1		1095356	1099527	
chr8	1099596	1102295	1099870	1101680	+	Cre08.g362400.t1.1	Cre08.g362400.t1.1		1099596	1102295	
chr8	1103176	1109536	1103735	1108553	+	AMYA2	Cre08.g362450.t1.2		1103176,1103675,1104072,1104550,1105062,1105356,1105788,1106241,1106586,1106944,1107301,1107665,1108068,1108369	1103342,1103930,1104326,1104788,1105155,1105505,1105913,1106368,1106763,1107129,1107435,1107844,1108138,1109536	Belongs to glycoside hydrolase family 13; catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose
chr8	1110146	1117834	1110635	1117489	+	Cre08.g362500.t1.2	Cre08.g362500.t1.2		1110146,1110573,1111078,1111325,1111707,1112037,1112529,1112710,1112984,1113328,1113793,1114439,1114812,1115123,1115524,1116096,1116490,1116721,1117107	1110471,1110914,1111149,1111515,1111864,1112341,1112595,1112848,1113204,1113631,1114276,1114588,1114925,1115360,1115840,1116251,1116576,1116932,1117834	
chr8	1117936	1121101	1118171	1120286	+	VPS37	Cre08.g362550.t1.2		1117936,1118292,1118522,1118776,1119354,1119626,1120070	1118203,1118357,1118603,1119177,1119421,1119788,1121101	Expressed Protein. Similar to the VPS37 class of Ub-binding enzymes that are components of the ESCRT-I complex involved in protein sorting at the MVB.
chr8	1121156	1127025	1121266	1126481	+	Cre08.g362600.t1.2	Cre08.g362600.t1.2		1121156,1121604,1122141,1122524,1122933,1123217,1123444,1123616,1124042,1124328,1124576,1124802,1125167,1125724,1126088,1126382	1121425,1121669,1122285,1122699,1123013,1123264,1123490,1123881,1124109,1124388,1124606,1124914,1125552,1125856,1126167,1127025	could be a  class A beta-lactamase or a serine hydrolase; has homologs only in bacteria; a putative recent horizontal gene tranfer event
chr8	1127044	1138045	1127484	1137941	-	IFT140	Cre08.g362650.t1.1		1137878,1137651,1137469,1137083,1136444,1136037,1135680,1135271,1134925,1134646,1134425,1133995,1133671,1133247,1133012,1132702,1132361,1132062,1131693,1131423,1130970,1130689,1130325,1129925,1129638,1129316,1129086,1128810,1128528,1128154,1127910,1127044	1138045,1137719,1137583,1137213,1136569,1136110,1135869,1135425,1135051,1134780,1134499,1134196,1133823,1133485,1133119,1132872,1132523,1132212,1131807,1131551,1131128,1130784,1130450,1130076,1129758,1129450,1129158,1128919,1128617,1128345,1127965,1127713	Component of core of IFT-A particle
chr8	1138516	1143607	1138721	1142214	+	Cre08.g362682.t1.2	Cre08.g362682.t1.2		1138516	1143607	
chr8	1143611	1147255	1144837	1146735	-	Cre08.g362700.t1.2	Cre08.g362700.t1.2		1147099,1146530,1146295,1145804,1145481,1143611	1147255,1146754,1146379,1146044,1145532,1145217	
chr8	1147356	1151484	1147420	1151045	+	Cre08.g362750.t1.2	Cre08.g362750.t1.2		1147356,1147540,1147910,1148061,1148378,1148637,1148940,1149234,1149538,1149860,1150382,1150760	1147425,1147634,1147954,1148187,1148474,1148711,1149003,1149383,1149581,1150042,1150516,1151484	
chr8	1151576	1152408	1151724	1151932	+	Cre08.g362776.t1.1	Cre08.g362776.t1.1		1151576	1152408	
chr8	1152450	1160105	1153141	1159548	-	Cre08.g362800.t1.2	Cre08.g362800.t1.2		1159902,1159467,1159239,1158992,1158633,1158295,1157962,1157385,1156649,1156106,1155814,1155397,1154798,1154345,1153890,1153406,1152450	1160105,1159614,1159304,1159076,1158748,1158390,1158095,1157548,1157142,1156335,1155907,1155569,1155044,1154500,1154081,1153751,1153197	
chr8	1160246	1164507	1160418	1163573	+	Cre08.g362850.t1.1	Cre08.g362850.t1.1		1160246,1160763,1162219,1162599,1162844,1163078,1163510	1160523,1162020,1162364,1162674,1162933,1163205,1164507	
chr8	1164510	1166755	1165228	1166547	-	PSBP4	Cre08.g362900.t1.1		1165914,1164510	1166755,1165393	shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OEC23, 23 kDa subunit of oxygen evolving complex : PMID: 3468511); orthologous to At4g15510; targeted to thylakoid lumen by TAT pathway
chr8	1166946	1172313	1167637	1171822	+	Cre08.g362950.t1.1	Cre08.g362950.t1.1		1166946,1167873,1168222,1168501,1168830,1169226,1169517,1169771,1170188	1167731,1167979,1168332,1168627,1168981,1169315,1169594,1169972,1172313	
chr8	1173448	1179442	1174430	1179034	-	Cre08.g363000.t1.2	Cre08.g363000.t1.2		1178946,1178700,1178439,1178220,1177849,1177483,1177098,1176816,1176582,1176146,1173448	1179442,1178800,1178504,1178274,1177994,1177603,1177255,1176905,1176659,1176347,1175761	
chr8	1179803	1184380	1180006	1183571	+	Cre08.g363050.t1.2	Cre08.g363050.t1.2		1179803,1180610,1181218,1181650,1182258,1182674,1183385	1180325,1180751,1181327,1181841,1182379,1182829,1184380	
chr8	1184863	1197841	1185538	1196524	+	Cre08.g363100.t1.1	Cre08.g363100.t1.1		1184863,1186251,1186621,1186969,1187487,1187764,1188193,1188648,1189072,1189364,1189676,1190432,1190964,1191211,1191629,1191791,1192134,1192421,1192753,1193074,1193485,1193791,1193972,1194319,1194664,1195013	1185582,1186454,1186774,1187335,1187605,1188025,1188447,1188893,1189199,1189441,1190034,1190816,1191082,1191400,1191681,1191906,1192232,1192538,1192896,1193257,1193537,1193815,1194098,1194412,1194746,1197841	
chr8	1198423	1211144	1198815	1210260	+	Cre08.g363150.t1.2	Cre08.g363150.t1.2		1198423,1199243,1199619,1199965,1200563,1200878,1201285,1201755,1202191,1202476,1202820,1203229,1203838,1204113,1204600,1204866,1205182,1205344,1205568,1205728,1205998,1206328,1206632,1206978,1207344,1207639,1207953,1208296,1208621,1208989	1198835,1199446,1199775,1200331,1200684,1201139,1201512,1202000,1202318,1202553,1203024,1203379,1203963,1204371,1204718,1205055,1205234,1205422,1205604,1205826,1206115,1206471,1206812,1207030,1207368,1207701,1208019,1208389,1208703,1211144	
chr8	1211353	1214337	1211446	1214047	+	Cre08.g363200.t1.2	Cre08.g363200.t1.2		1211353,1211760,1212447,1212832,1213145,1213384,1213704	1211558,1212215,1212547,1212899,1213201,1213476,1214337	
chr8	1214357	1223902	1215178	1223735	-	Cre08.g363250.t1.1	Cre08.g363250.t1.1		1223705,1223255,1222939,1222393,1219060,1216173,1215963,1215620,1214357	1223902,1223392,1223147,1222735,1222215,1218849,1216000,1215673,1215421	
chr8	1231837	1239842	1233773	1234149	-	Cre08.g363267.t1.1	Cre08.g363267.t1.1		1239789,1231837	1239842,1234166	
chr8	1240063	1241374	1240260	1240789	+	Cre08.g363283.t1.1	Cre08.g363283.t1.1		1240063,1240446,1240641	1240304,1240499,1241374	
chr8	1243469	1247332	1244112	1247148	-	Cre08.g363300.t1.2	Cre08.g363300.t1.2		1246887,1246626,1245370,1244687,1243469	1247332,1246764,1245884,1244816,1244318	
chr8	1247443	1252172	1247672	1251844	+	Cre08.g363350.t1.1	Cre08.g363350.t1.1		1247443,1248239,1248425,1248860,1249262,1249748,1250519,1250990,1251571	1247978,1248336,1248488,1249030,1249512,1249784,1250713,1251322,1252172	
chr8	1263583	1266494	1263723	1265710	+	Cre08.g363367.t1.1	Cre08.g363367.t1.1		1263583,1264093,1264864,1265335	1263857,1264129,1265058,1266494	
chr8	1266561	1269532	1267360	1268831	-	Cre08.g363383.t1.1	Cre08.g363383.t1.1		1268539,1266561	1269532,1267360	
chr8	1269643	1273768	1269752	1271314	+	Cre08.g363400.t1.1	Cre08.g363400.t1.1		1269643,1269932,1270351,1270735,1271271	1269795,1270062,1270413,1270868,1273768	
chr8	1273893	1278546	1274147	1278055	+	Cre08.g363450.t1.2	Cre08.g363450.t1.2		1273893,1274913,1275732,1276171,1276596,1276907,1277403,1277923	1274693,1275074,1275935,1276406,1276632,1277101,1277678,1278546	
chr8	1278549	1282640	1279794	1282498	-	Cre08.g363500.t1.2	Cre08.g363500.t1.2		1282356,1281854,1281124,1280797,1280343,1278549	1282640,1281990,1281245,1280878,1280414,1279980	
chr8	1282743	1287584	1283587	1286856	+	Cre08.g363600.t1.2	Cre08.g363600.t1.2		1282743,1283064,1283439,1284163,1284584,1285056,1285525,1286040,1286684	1282879,1283193,1283971,1284345,1284730,1285127,1285645,1286202,1287584	
chr8	1287587	1293332	1287844	1293267	-	Cre08.g363650.t1.1	Cre08.g363650.t1.1		1292953,1292100,1291382,1291166,1290521,1289886,1289264,1288623,1287587	1293332,1292697,1291817,1291200,1290806,1290274,1289463,1289049,1288483	
chr8	1293433	1296570	1293531	1295929	+	Cre08.g363700.t1.1	Cre08.g363700.t1.1		1293433,1294324,1294727,1295064,1295437,1295692	1293730,1294469,1294850,1295297,1295519,1296570	
chr8	1296627	1300252	1298612	1300007	-	Cre08.g363750.t1.1	Cre08.g363750.t1.1		1299911,1299720,1299322,1298935,1296627	1300252,1299768,1299434,1298954,1298712	
chr8	1300314	1302222	1300558	1302108	-	Cre08.g363800.t1.1	Cre08.g363800.t1.1		1302093,1301868,1300846,1300314	1302222,1301912,1301677,1300617	
chr8	1302363	1320964	1302580	1320466	+	POLG1X	Cre08.g363837.t1.1		1302363,1302960,1303288,1303799,1303987,1306199,1306478,1307037,1307285,1307791,1308458,1308995,1309215,1309821,1310397,1311170,1311700,1311934,1312365,1313535,1314694,1315155,1315516,1315914,1316570,1316956,1317478,1318374,1318687,1319099,1319446,1319944	1302807,1303062,1303518,1303821,1305878,1306317,1306813,1307108,1307443,1308075,1308601,1309044,1309429,1309888,1310473,1311416,1311743,1312053,1312425,1313595,1314770,1315253,1315563,1316245,1316615,1317055,1317566,1318468,1318759,1319203,1319535,1320964	Homologous to E. coli PolI-like DNA polymerase; POLA family DNA polymerase; probably functions in mitochondria and/or chloroplast. May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	1322653	1336311	1323251	1335309	+	Cre08.g363874.t1.1	Cre08.g363874.t1.1		1322653,1323221,1324023,1324393,1325042,1325609,1326094,1326463,1327029,1327387,1327645,1328126,1330193,1330629,1331120,1331565,1332113,1332430,1333007,1333435,1333738,1334057,1334553,1335168	1322869,1323758,1324091,1324789,1325276,1325706,1326344,1326695,1327188,1327462,1327760,1328219,1330347,1330710,1331370,1331764,1332197,1332591,1333115,1333580,1333857,1334180,1334701,1336311	
chr8	1322653	1336311	1323251	1335309	+	Cre08.g363874.t2.1	Cre08.g363874.t2.1		1322653,1323221,1324023,1324393,1325042,1325609,1326097,1326463,1327029,1327387,1327645,1328126,1330193,1330629,1331120,1331565,1332113,1332430,1333007,1333435,1333738,1334057,1334553,1335168	1322869,1323758,1324091,1324789,1325276,1325706,1326344,1326695,1327188,1327462,1327760,1328219,1330347,1330710,1331370,1331764,1332197,1332591,1333115,1333580,1333857,1334180,1334701,1336311	
chr8	1339863	1350144	1340567	1348773	+	Cre08.g363950.t1.1	Cre08.g363950.t1.1		1339863,1341253,1341710,1342126,1342649,1343255,1343707,1345008,1345425,1346370	1340964,1341323,1341844,1342372,1342866,1343425,1344716,1345257,1346132,1350144	null-allele mutant was isolated (PMID 29743196)
chr8	1352644	1368009	1353513	1367765	-	Cre08.g364000.t1.1	Cre08.g364000.t1.1		1367552,1366116,1365668,1364682,1363328,1362929,1362574,1361844,1361337,1360959,1360389,1359894,1359421,1358266,1357728,1356381,1355452,1352644	1368009,1366253,1365844,1364808,1363755,1363060,1362718,1362001,1361512,1361208,1360697,1360217,1359635,1358445,1357947,1356716,1356198,1355337	
chr8	1371582	1384559	1372353	1384427	-	Cre08.g364050.t1.2	Cre08.g364050.t1.2		1384373,1384170,1383384,1382745,1382162,1381787,1381244,1380762,1375696,1375465,1374628,1373601,1373275,1372870,1371582	1384559,1384232,1383461,1382900,1382318,1381883,1381367,1380802,1375891,1375566,1375074,1374356,1373319,1372917,1372677	
chr8	1384904	1391629	1385934	1391546	-	Cre08.g364100.t1.2	Cre08.g364100.t1.2		1391432,1391157,1390806,1390480,1389490,1389166,1388784,1388301,1387684,1387202,1386741,1386200,1384904	1391629,1391202,1390921,1390548,1389596,1389251,1388878,1388477,1387788,1387317,1386888,1386313,1386051	
chr8	1393642	1407499	1394810	1406506	-	Cre08.g364151.t1.1	Cre08.g364151.t1.1		1406994,1402057,1395603,1393642	1407499,1406700,1401803,1395365	
chr8	1408416	1409899	1408762	1409826	-	Cre08.g364200.t1.1	Cre08.g364200.t1.1		1409802,1409350,1409133,1408416	1409899,1409547,1409234,1409041	
chr8	1410010	1413877	1410284	1412908	+	Cre08.g364250.t1.2	Cre08.g364250.t1.2		1410010,1410390,1410545,1410856,1411321,1412007,1412524,1412812	1410316,1410460,1410662,1411006,1411389,1412070,1412630,1413877	
chr8	1414100	1423331	1414400	1422365	+	FAP29	Cre08.g364300.t1.2		1414100,1414877,1415352,1415719,1416107,1416659,1417170,1417769,1418157,1418599,1419077,1419419,1419804,1420183,1420473,1420855,1421219,1421545,1421945,1422204	1414516,1415045,1415444,1415788,1416297,1416820,1417402,1417844,1418219,1418680,1419159,1419487,1419968,1420252,1420610,1420949,1421282,1421642,1422059,1423331	Flagellar Associated Protein, found in flagellar proteome.  Contains type A von Willebrand factor domain
chr8	1423580	1429139	1423697	1428564	+	Cre08.g364351.t1.1	Cre08.g364351.t1.1		1423580,1424429,1424880,1425509,1425914,1426514,1427143,1427548,1427948,1428369	1424047,1424658,1425016,1425556,1426133,1426650,1427190,1427742,1428082,1429139	
chr8	1429451	1439949	1432218	1439704	-	Cre08.g364400.t1.1	Cre08.g364400.t1.1		1437673,1437074,1436564,1436177,1435780,1435299,1434721,1432801,1429451	1439949,1437231,1436907,1436245,1435934,1435536,1434951,1433401,1432528	
chr8	1440662	1443629	1441371	1443435	-	NAT1	Cre08.g364450.t1.2		1443370,1443209,1442515,1442077,1441787,1440662	1443629,1443233,1442606,1442177,1441889,1441528	N-acetyltransferase-like protein
chr8	1443730	1452985	1443775	1452250	+	Cre08.g364501.t1.1	Cre08.g364501.t1.1		1443730,1444109,1444453,1444787,1445444,1445997,1446566,1446981,1448038,1448365,1449070,1450974,1451383,1451664,1452166	1443877,1444163,1444505,1445161,1445758,1446246,1446666,1447787,1448110,1448917,1450789,1451037,1451453,1451777,1452985	
chr8	1453100	1465842	1453890	1465282	+	Cre08.g364550.t1.1	Cre08.g364550.t1.1		1453100,1454433,1454935,1455443,1455834,1456472,1456906,1457465,1457831,1458257,1459470,1459803,1460338,1460665,1461132,1461379,1461744,1461975,1462168,1462533,1462852,1463288,1463682,1464189,1464449,1464672,1465146	1454163,1454723,1455059,1455528,1455910,1456627,1457249,1457597,1458040,1459188,1459527,1460075,1460427,1460880,1461194,1461441,1461818,1462034,1462329,1462595,1462985,1463468,1463774,1464251,1464503,1464732,1465842	null-allele mutant was isolated (PMID 29743196)
chr8	1465960	1472131	1466751	1471153	+	Cre08.g364600.t1.2	Cre08.g364600.t1.2		1465960,1466744,1467121,1467528,1468117,1468597,1469089,1469396,1469730,1470071,1470582,1471029	1466212,1466836,1467308,1467624,1468256,1468755,1469165,1469420,1469840,1470117,1470689,1472131	
chr8	1472139	1475329	1472487	1475236	-	Cre08.g364650.t1.1	Cre08.g364650.t1.1		1475065,1474948,1474462,1473950,1473533,1473355,1472996,1472139	1475329,1474988,1474569,1474219,1473623,1473387,1473136,1472667	
chr8	1475430	1479807	1475516	1478808	+	Cre08.g364700.t1.2	Cre08.g364700.t1.2		1475430,1476145,1476610,1477042,1477474,1477820,1478122,1478808	1475795,1476245,1476794,1477208,1477595,1477888,1478311,1479807	
chr8	1475430	1479807	1475516	1478808	+	Cre08.g364700.t2.1	Cre08.g364700.t2.1		1475430,1476145,1476610,1477042,1477474,1477820,1478125,1478808	1475795,1476245,1476794,1477208,1477595,1477888,1478311,1479807	
chr8	1481020	1481931	1481055	1481496	+	Cre08.g364726.t1.1	Cre08.g364726.t1.1		1481020,1481458	1481248,1481931	
chr8	1482360	1499328	1482786	1498139	+	Cre08.g364751.t1.1	Cre08.g364751.t1.1		1482360,1483094,1483653,1486577,1487084,1487947,1488519,1489379,1492472,1492712,1493024,1493382,1494323,1495602,1497143	1482883,1483287,1486447,1486970,1487278,1488112,1489227,1492273,1492589,1492807,1493149,1494094,1495442,1496915,1499328	Putative asic-leucine zipper (bZIP) transcription factor
chr8	1499522	1505845	1499575	1504664	+	Cre08.g364775.t1.2	Cre08.g364775.t1.2		1499522,1499828,1500186,1501124,1502403,1503668	1499611,1499953,1500895,1502243,1503440,1505845	
chr8	1507324	1520155	1507440	1519426	+	Cre08.g364800.t1.2	Cre08.g364800.t1.2		1507324,1507604,1507745,1507903,1508472,1508918,1509355,1510118,1510813,1511393,1511912,1512322,1512820,1513300,1513681,1514314,1514712,1515165,1515521,1515880,1516182,1516519,1516854,1517245,1517614,1518145,1518502,1519176	1507520,1507659,1507809,1508016,1508578,1509061,1509595,1510288,1510941,1511614,1512010,1512468,1512939,1513383,1513821,1514490,1514873,1515319,1515596,1515975,1516313,1516617,1517010,1517378,1517904,1518285,1518923,1520155	
chr8	1520604	1525535	1520729	1525359	+	AC115	Cre08.g364850.t1.1		1520604,1521129,1521508,1521921,1522311,1522987,1523290,1523567,1523941,1524305,1524657,1525239	1520861,1521254,1521660,1521971,1522388,1523049,1523367,1523629,1524025,1524376,1524928,1525535	the ac115 PSII-deficient mutant was reported to carry a mutation in this gene, but this is not supported by the genome sequence and the current annotation
chr8	1525624	1537547	1525856	1535806	+	Cre08.g364862.t1.2	Cre08.g364862.t1.2		1525624,1526004,1526789,1527397,1527814,1528223,1528551,1528950,1529256,1529645,1530095,1530617,1531040,1531492,1531870,1532230,1532455,1534237,1534545,1534931,1535274,1535629	1525925,1526456,1526898,1527502,1527895,1528323,1528675,1529013,1529464,1529795,1530184,1530730,1531213,1531578,1531923,1532317,1534031,1534309,1534615,1535113,1535393,1537547	
chr8	1542058	1545153	1543098	1544725	-	FAP316	Cre08.g364931.t1.1		1544904,1542058	1545153,1544801	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1587104	1591365	1587763	1591120	+	FAP317	Cre08.g364950.t1.1		1587104,1587885,1591120	1587782,1590307,1591365	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1587104	1590615	1587763	1589588	+	FAP317	Cre08.g364950.t2.1		1587104,1587885	1587782,1590615	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1591368	1593363	1592803	1593102	-	Cre08.g364989.t2.1	Cre08.g364989.t2.1		1592902,1591368	1593363,1592813	
chr8	1591108	1593353	1592803	1593102	-	Cre08.g364989.t1.1	Cre08.g364989.t1.1		1592902,1591108	1593353,1592813	
chr8	1546109	1557193	1547227	1556946	-	Cre08.g365000.t1.1	Cre08.g365000.t1.1		1556910,1556341,1555674,1555359,1554748,1554448,1553957,1553627,1553032,1552629,1552401,1552013,1551569,1549628,1546109	1557193,1556418,1556206,1555446,1554957,1554549,1554085,1553686,1553133,1552778,1552493,1552184,1551669,1551412,1549378	contains a calmodulin-binding domain
chr8	1594188	1597093	1596848	1597032	-	Cre08.g365027.t1.1	Cre08.g365027.t1.1		1594188	1597093	
chr8	1557525	1561343	1559342	1561152	-	FAP409	Cre08.g365050.t1.2		1561067,1557525	1561343,1560916	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1597194	1613125	1611267	1611904	+	FAP318	Cre08.g365065.t1.1		1597194,1611231	1597206,1613125	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1611201	1613125	1611267	1611904	+	FAP318	Cre08.g365065.t2.1		1611201	1613125	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1562184	1564893	1562751	1564591	-	FAP242	Cre08.g365100.t1.1		1564476,1562184	1564893,1564325	Coiled-Coil Flagellar Associated Protein, found in the flagellar proteome; Belongs to family E of Chlamydomonadales-specific proteins, all on chromosome 8; function unknown
chr8	1562184	1564753	1562751	1564561	-	FAP242	Cre08.g365100.t2.1		1564476,1562184	1564753,1564325	Coiled-Coil Flagellar Associated Protein, found in the flagellar proteome; Belongs to family E of Chlamydomonadales-specific proteins, all on chromosome 8; function unknown
chr8	1613174	1616605	1613482	1615300	+	FAP319	Cre08.g365103.t1.1		1613174,1613719,1614019	1613567,1613864,1616605	
chr8	1616694	1618395	1616884	1618048	+	CSE6	Cre08.g365141.t2.1		1616694,1617121,1617995	1616969,1617708,1618395	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1616554	1618395	1616884	1618048	+	CSE6	Cre08.g365141.t1.1		1616554,1617121,1617995	1616969,1617708,1618395	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1566224	1568832	1566433	1568244	+	FAP320	Cre08.g365150.t2.1		1566224,1566670	1566518,1568832	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1566104	1569475	1566433	1568244	+	FAP320	Cre08.g365150.t1.2		1566104,1566670	1566518,1569475	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1569524	1572835	1569832	1571643	+	FAP321	Cre08.g365200.t1.2		1569524,1570069	1569917,1572835	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1572884	1575965	1573216	1574520	+	CSE9	Cre08.g365204.t1.1		1572884,1573453,1574244	1573301,1573598,1575965	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1576014	1578372	1576102	1577913	+	FAP322	Cre08.g365205.t1.1		1576014,1576339	1576187,1578372	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1576014	1587055	1576102	1586620	+	FAP322	Cre08.g365205.t2.1		1576014,1576339,1586620	1576187,1578297,1587055	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1618564	1621147	1618751	1620562	+	FAP359	Cre08.g365300.t1.2		1618564,1618988	1618836,1621147	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr8	1621158	1624563	1621358	1624515	-	Cre08.g365351.t1.1	Cre08.g365351.t1.1		1624305,1624084,1623249,1622381,1621158	1624563,1624233,1623849,1622772,1622129	
chr8	1624760	1626373	1625458	1626183	-	PRPL31	Cre08.g365400.t1.2		1626324,1625796,1624760	1626373,1626202,1625482	imported to chloroplast; Chloroplast large ribosomal subunit protein L31
chr8	1626514	1632559	1626643	1631805	+	Cre08.g365450.t1.2	Cre08.g365450.t1.2		1626514,1627394,1627961,1628435,1628819,1629288,1629711,1630047,1630549,1631139,1631511,1631753	1626748,1627581,1628125,1628510,1628986,1629404,1629795,1630173,1630698,1631244,1631560,1632559	
chr8	1632674	1637375	1632917	1637268	+	Cre08.g365500.t1.1	Cre08.g365500.t1.1		1632674,1633385,1636412,1636907	1633229,1636159,1636530,1637375	
chr8	1637378	1641583	1638151	1641518	-	Cre08.g365550.t1.1	Cre08.g365550.t1.1		1641440,1641228,1641018,1640730,1640334,1639967,1639147,1638553,1637378	1641583,1641373,1641142,1640785,1640441,1640078,1639566,1638884,1638304	
chr8	1641648	1653683	1642356	1653590	-	Cre08.g365600.t1.2	Cre08.g365600.t1.2		1653453,1653199,1652690,1652177,1651711,1651231,1650806,1650252,1649901,1649264,1648829,1648340,1647361,1646898,1646261,1646011,1645350,1644633,1644401,1643861,1643187,1642814,1641648	1653683,1653226,1652838,1652273,1651878,1651291,1650886,1650352,1650011,1649375,1648918,1648548,1647930,1647030,1646506,1646066,1645566,1645005,1644515,1643987,1643291,1642948,1642463	Phosphomethylpyrimidine kinase/thiamine-phosphate diphosphorylase.  Most likely candidate for mutant locus THI1
chr8	1653784	1659311	1653857	1658458	+	Cre08.g365632.t1.1	Cre08.g365632.t1.1		1653784,1654395,1654785,1655191,1655792,1656069,1656556,1657129,1657675,1658404	1654040,1654532,1654888,1655320,1655863,1656146,1656655,1657209,1657760,1659311	
chr8	1659338	1661743	1659769	1661315	-	Cre08.g365664.t1.2	Cre08.g365664.t1.2		1659338	1661743	
chr8	1662601	1670554	1662672	1669710	+	SIR4	Cre08.g365692.t1.1		1662601,1664022,1664541,1665152,1665495,1666012,1666605,1667454,1669458	1663047,1664197,1664661,1665235,1665597,1666108,1666739,1667583,1670554	May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	1670587	1680812	1671223	1680735	-	Cre08.g365720.t1.1	Cre08.g365720.t1.1		1680699,1680591,1680358,1679834,1679264,1678838,1678530,1677362,1676746,1674777,1673448,1672105,1670587	1680812,1680637,1680508,1680128,1679363,1678843,1678599,1678174,1677142,1675426,1674157,1672918,1671856	
chr8	1681149	1684942	1682102	1684215	-	Cre08.g365750.t1.1	Cre08.g365750.t1.1		1683963,1683182,1681149	1684942,1683831,1682964	
chr8	1685357	1691192	1685950	1690971	-	Cre08.g365800.t1.1	Cre08.g365800.t1.1		1690788,1690499,1689507,1689134,1688900,1688363,1688094,1687638,1687304,1686582,1685357	1691192,1690571,1690201,1689230,1688936,1688473,1688164,1687732,1687387,1687007,1686271	
chr8	1691243	1701342	1692647	1700241	-	Cre08.g365825.t1.1	Cre08.g365825.t1.1		1701004,1700725,1700521,1699615,1699138,1698842,1698285,1697817,1697363,1696677,1695641,1695073,1694578,1694015,1693566,1691243	1701342,1700806,1700551,1700250,1699238,1698920,1698607,1697979,1697480,1696800,1695828,1695336,1694745,1694067,1693739,1693140	
chr8	1691243	1701342	1692647	1700241	-	Cre08.g365825.t2.1	Cre08.g365825.t2.1		1701004,1700725,1700521,1700394,1699615,1699138,1698842,1698285,1697817,1697363,1696677,1695641,1695073,1694578,1694015,1693566,1691243	1701342,1700806,1700551,1700408,1700250,1699238,1698920,1698607,1697979,1697480,1696800,1695828,1695336,1694745,1694067,1693739,1693140	
chr8	1701443	1709354	1701498	1708579	+	Cre08.g365851.t1.1	Cre08.g365851.t1.1		1701443,1702174,1702783,1703168,1706670,1707166,1707580,1708091,1708474	1701762,1702292,1702857,1703276,1706892,1707319,1707713,1708185,1709354	May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	1710379	1712537	1711095	1712466	-	LHCSR1	Cre08.g365900.t1.2		1712333,1711932,1711524,1710379	1712537,1712123,1711762,1711293	LI818r-1; involved in protection against UV-B and induced by UVR8; Low-CO2 and high-light inducible chlorophyll a/b binding protein; regulated by CCM1 [PMID: 15235119]
chr8	1714943	1724251	1715025	1723392	+	Cre08.g365950.t1.2	Cre08.g365950.t1.2		1714943,1715681,1716272,1716967,1717340,1717742,1718086,1718664,1720044,1720982,1721610,1721982,1722561,1723236	1715403,1715874,1716419,1717074,1717399,1717839,1718215,1718837,1720508,1721321,1721694,1722106,1722751,1724251	
chr8	1724416	1725834	1724502	1725546	+	Cre08.g366000.t1.2	Cre08.g366000.t1.2		1724416,1724917,1725467	1724704,1725001,1725834	
chr8	1725893	1728804	1725992	1728347	+	Cre08.g366050.t1.2	Cre08.g366050.t1.2		1725893,1726480,1727100,1727505,1727829,1728059,1728263	1726007,1726698,1727179,1727583,1727900,1728100,1728804	
chr8	1728853	1751514	1729303	1751147	+	Cre08.g366101.t1.1	Cre08.g366101.t1.1		1728853,1729582,1730002,1730400,1730756,1731034,1731651,1731827,1732470,1732935,1733309,1733813,1734207,1734744,1735174,1735463,1735753,1735980,1736360,1736737,1736960,1737218,1737562,1737889,1738127,1738410,1738817,1739191,1739466,1739814,1740230,1740587,1740871,1741350,1741704,1742082,1742375,1742847,1743331,1744059,1744458,1744900,1745469,1745857,1746201,1746454,1746761,1747028,1747290,1747702,1747979,1748240,1748488,1748744,1748993,1749243,1749509,1749825,1750156,1750303,1750583,1751000	1729372,1729757,1730133,1730528,1730837,1731248,1731708,1731937,1732592,1733000,1733402,1733919,1734308,1734944,1735272,1735561,1735851,1736078,1736461,1736781,1737010,1737304,1737660,1737987,1738222,1738508,1738915,1739247,1739510,1739912,1740328,1740685,1740972,1741451,1741748,1742132,1742461,1742948,1743531,1744166,1744559,1745067,1745600,1745955,1746299,1746552,1746847,1747129,1747388,1747800,1748077,1748341,1748586,1748839,1749021,1749312,1749610,1749923,1750200,1750455,1750840,1751514	
chr8	1751518	1763742	1751969	1763578	-	ATG16	Cre08.g366150.t1.1		1763497,1763241,1762765,1762346,1761698,1761312,1761058,1760576,1760215,1759831,1759370,1758701,1758467,1758041,1756374,1756152,1755723,1755245,1754029,1753584,1752899,1752529,1751518	1763742,1763318,1762893,1762456,1762117,1761428,1761186,1760834,1760306,1759895,1759675,1758996,1758565,1758144,1757757,1756201,1755806,1755383,1754855,1753726,1753066,1752607,1752122	Conserved protein involved in autophagy; interacts with Atg12-Atg5 conjugates to form Atg12-Atg5-Atg16 multimers, which binds to membranes and localizes to the pre-autophagosomal structure and are required for autophagy
chr8	1763943	1767713	1764372	1767467	+	Cre08.g366200.t1.1	Cre08.g366200.t1.1		1763943,1765264,1765732,1766049,1766468,1766762	1765008,1765352,1765858,1766213,1766578,1767713	
chr8	1767797	1772962	1769363	1772676	-	Cre08.g366250.t1.1	Cre08.g366250.t1.1		1772670,1772484,1767797	1772962,1772529,1772242	
chr8	1773126	1779872	1773942	1779820	-	Cre08.g366300.t1.1	Cre08.g366300.t1.1		1779787,1773126	1779872,1779162	
chr8	1779919	1785022	1781299	1784874	-	Cre08.g366350.t1.1	Cre08.g366350.t1.1		1784844,1779919	1785022,1784545	
chr8	1785413	1790429	1785774	1790092	+	RAD23	Cre08.g366400.t1.2		1785413,1786312,1786536,1787024,1787699,1788463,1789034,1789450,1789969	1786038,1786378,1786720,1787194,1787896,1788564,1789069,1789530,1790429	yeast Rad23 homolog [PMID: 17992532]
chr8	1785413	1790429	1785774	1790092	+	RAD23	Cre08.g366400.t2.1		1785413,1786312,1786536,1787024,1787699,1788463,1789450,1789969	1786038,1786378,1786720,1787194,1787896,1788564,1789530,1790429	yeast Rad23 homolog [PMID: 17992532]
chr8	1790973	1797024	1791747	1796480	+	Cre08.g366450.t1.2	Cre08.g366450.t1.2		1790973,1792476,1792763,1793542,1793767,1794298,1794670,1794980,1795297,1795487,1795750,1795985,1796334	1792140,1792571,1793412,1793570,1793898,1794367,1794754,1795045,1795342,1795583,1795815,1796187,1797024	
chr8	1805453	1810969	1805784	1810466	+	Cre08.g366500.t1.2	Cre08.g366500.t1.2		1805453,1806514,1806799,1807393,1807593,1808044,1808623,1808955,1809270,1809458,1809712,1809953,1810320	1806177,1806609,1807268,1807421,1807724,1808113,1808707,1809020,1809315,1809554,1809777,1810155,1810969	
chr8	1809233	1810969	1809263	1810466	+	Cre08.g366500.t2.1	Cre08.g366500.t2.1		1809233,1809458,1809712,1809953,1810320	1809315,1809554,1809777,1810155,1810969	
chr8	1812129	1818792	1814087	1818747	-	Cre08.g366550.t1.1	Cre08.g366550.t1.1		1818687,1815559,1812129	1818792,1818597,1815218	
chr8	1819267	1824512	1820646	1824424	-	Cre08.g366579.t1.2	Cre08.g366579.t1.2		1824352,1823812,1823533,1819267	1824512,1823885,1823618,1823261	
chr8	1824803	1830274	1825079	1829940	+	Cre08.g366600.t1.1	Cre08.g366600.t1.1		1824803,1825570,1828823	1825171,1828560,1830274	
chr8	1831343	1839225	1831572	1837311	+	Cre08.g366650.t1.1	Cre08.g366650.t1.1		1831343,1831706,1832039	1831605,1831758,1839225	
chr8	1839273	1840814	1839318	1839880	+	Cre08.g366676.t1.1	Cre08.g366676.t1.1		1839273,1839542,1839863	1839356,1839666,1840814	
chr8	1840883	1844767	1841531	1843221	+	Cre08.g366700.t1.1	Cre08.g366700.t1.1		1840883,1841410,1841787	1841141,1841615,1844767	
chr8	1851464	1856677	1851735	1855095	+	Cre08.g366750.t1.1	Cre08.g366750.t1.1		1851464,1851854,1852293,1852576,1853464,1854327	1851760,1851880,1852514,1853377,1854007,1856677	
chr8	1856824	1861675	1857216	1860480	+	Cre08.g366800.t1.1	Cre08.g366800.t1.1		1856824,1857692,1858101,1860036	1857219,1857859,1859756,1861675	
chr8	1861724	1866566	1861754	1865507	+	Cre08.g366850.t1.1	Cre08.g366850.t1.1		1861724,1862205,1864706	1861847,1864514,1866566	
chr8	1866614	1870585	1866807	1869786	+	Cre08.g366874.t1.2	Cre08.g366874.t1.2		1866614,1867140	1866834,1870585	
chr8	1870784	1875605	1871009	1874586	+	Cre08.g366900.t1.2	Cre08.g366900.t1.2		1870784,1871213,1871400,1871643,1872090	1871042,1871265,1871490,1871849,1875605	
chr8	1875654	1882575	1875732	1880103	+	Cre08.g366950.t1.2	Cre08.g366950.t1.2		1875654,1875978,1876426,1876746,1878768	1875777,1876030,1876520,1878580,1882575	
chr8	1883877	1886993	1884462	1886485	-	Cre08.g367000.t1.2	Cre08.g367000.t1.2		1886855,1886649,1883877	1886993,1886719,1886536	
chr8	1887085	1889863	1889162	1889695	-	Cre08.g367050.t1.1	Cre08.g367050.t1.1		1889500,1887085	1889863,1889366	
chr8	1890348	1895453	1891335	1895297	-	Cre08.g367100.t1.1	Cre08.g367100.t1.1		1895251,1894976,1894679,1892480,1892284,1892034,1890348	1895453,1895133,1894813,1894523,1892343,1892161,1891827	
chr8	1895528	1902193	1896236	1901718	-	MFT23	Cre08.g367150.t1.1		1902077,1901597,1901194,1900714,1900191,1899760,1899077,1898163,1897882,1897418,1896528,1895528	1902193,1901882,1901345,1900785,1900270,1899937,1899517,1898285,1897986,1897507,1896668,1896335	Permease
chr8	1895528	1902193	1896236	1901718	-	MFT23	Cre08.g367150.t2.1		1902077,1901597,1901194,1900714,1900191,1899760,1899077,1898163,1897882,1896528,1895528	1902193,1901882,1901345,1900785,1900270,1899937,1899517,1898285,1897986,1896668,1896335	Permease
chr8	1902251	1911723	1902667	1911408	-	VPS52	Cre08.g367200.t1.1		1911057,1910401,1909836,1908996,1908602,1908151,1907591,1906897,1906318,1905795,1905433,1905049,1904499,1904040,1903443,1903033,1902251	1911723,1910472,1909985,1909139,1908661,1908231,1907674,1907001,1906425,1905898,1905628,1905202,1904902,1904132,1903534,1903149,1902776	Hypothetical Conserved Protein. Similar to VPS52/SAC2, a component of the GARP (Golgi-associated retrograde protein) complex
chr8	1911844	1924552	1912153	1924167	+	FAP176	Cre08.g367250.t1.1		1911844,1912603,1913009,1913322,1913808,1914103,1914434,1914926,1915311,1915741,1916422,1916832,1917360,1917682,1918187,1918471,1919402,1919801,1920494,1920908,1921381,1921810,1922318,1922858,1923150,1923740,1924107	1912332,1912657,1913137,1913457,1913893,1914150,1914772,1915050,1915397,1916041,1916499,1917005,1917542,1917810,1918270,1919222,1919579,1920242,1920659,1921062,1921520,1922109,1922506,1922952,1923271,1923903,1924552	Flagellar Associated Protein, found in the flagellar proteome
chr8	1924614	1931315	1924850	1930472	+	Cre08.g367300.t1.1	Cre08.g367300.t1.1		1924614,1925385,1925876,1926215,1926740,1928029,1928893,1929381,1929707,1930334	1925240,1925627,1925983,1926578,1927561,1928135,1929042,1929431,1929847,1931315	ts-lethal mutant was isolated (PMID 29743196)
chr8	1931364	1936005	1931419	1935574	+	Cre08.g367350.t1.2	Cre08.g367350.t1.2		1931364,1931892,1932600,1933000,1933403,1933674,1934036,1934737,1935296	1931611,1932128,1932673,1933131,1933448,1933758,1934387,1934936,1936005	
chr8	1936019	1938229	1936797	1938174	-	LHCSR3.2	Cre08.g367400.t1.1		1938023,1937663,1937161,1936019	1938229,1937854,1937399,1936995	LHCSR3.2
chr8	1947449	1949669	1947504	1948876	+	LHCSR3.1	Cre08.g367500.t1.1		1947449,1947818,1948273,1948678	1947655,1948009,1948511,1949669	LHCSR3.1
chr8	1950529	1952701	1950649	1952042	+	FAP291	Cre08.g367550.t1.2		1950529,1950769,1950976,1951448,1951718,1951985	1950669,1950799,1951060,1951569,1951786,1952701	Flagellar Associated Protein; found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr8	1952723	1957602	1953422	1957317	-	OASTL1	Cre08.g367600.t1.2		1957314,1957009,1956507,1956007,1955689,1955346,1955012,1954701,1954330,1953920,1952723	1957602,1957085,1956585,1956165,1955782,1955444,1955052,1954823,1954414,1954024,1953535	cysteine synthase, chloroplast precursor; O-acetylserine sulfhydrylase, O-acetylserine (Thiol)-lyase
chr8	1957744	1960684	1958259	1960184	+	MUT11	Cre08.g367650.t1.2		1957744,1958106,1959422,1959739	1958000,1958840,1959508,1960684	WD40-repeat-containing protein involved in transcriptional gene silencing (AAL60198); subunit of histone methyltransferase complexes
chr8	1960688	1963523	1960938	1963250	-	Cre08.g367700.t1.1	Cre08.g367700.t1.1		1963196,1961877,1961420,1960688	1963523,1962977,1961491,1961076	
chr8	1963658	1968823	1964271	1968722	-	Cre08.g367750.t1.1	Cre08.g367750.t1.1		1968632,1968411,1968137,1967812,1967420,1966915,1966602,1966382,1965942,1965582,1965277,1964950,1964642,1963658	1968823,1968490,1968233,1967913,1967502,1967068,1966652,1966435,1966022,1965730,1965331,1965009,1964692,1964406	ts-lethal mutant block at S/M (PMID 29743196)
chr8	1968934	1973845	1969170	1973203	+	NDH2	Cre08.g367800.t1.2		1968934,1969400,1969668,1970182,1970555,1970991,1972625,1972968	1969201,1969429,1969858,1970250,1970719,1971104,1972737,1973845	probably an ADP-ribose diphosphatase
chr8	1973850	1976783	1974944	1976466	-	Cre08.g367850.t1.1	Cre08.g367850.t1.1		1976333,1975477,1973850	1976783,1976246,1975325	
chr8	1977475	1978263	1977954	1978147	-	Cre08.g367876.t1.2	Cre08.g367876.t1.2		1977475	1978263	
chr8	1983404	1987445	1983861	1985290	+	Cre08.g367900.t1.2	Cre08.g367900.t1.2		1983404,1985014,1985227	1983930,1985133,1987445	
chr8	1984634	1987445	1984968	1985290	+	Cre08.g367900.t2.1	Cre08.g367900.t2.1		1984634,1985227	1985133,1987445	
chr8	1987908	1998243	1989433	1998013	-	FAP323	Cre08.g367950.t1.1		1997827,1997408,1996751,1996223,1995510,1994912,1994326,1993389,1992576,1987908	1998243,1997497,1996874,1996407,1995593,1995064,1994481,1993556,1993075,1992374	
chr8	1998570	2000829	1999027	2000539	-	Cre08.g368000.t1.1	Cre08.g368000.t1.1		2000506,1999451,1998570	2000829,2000234,1999158	
chr8	2000978	2002243	2001353	2001561	-	Cre08.g368026.t1.1	Cre08.g368026.t1.1		2000978	2002243	
chr8	2002298	2004413	2002710	2004170	-	Cre08.g368050.t1.2	Cre08.g368050.t1.2		2004011,2003840,2003351,2002298	2004413,2003926,2003440,2003031	
chr8	2004536	2011480	2004719	2011197	+	Cre08.g368100.t1.1	Cre08.g368100.t1.1		2004536,2004969,2005132,2005491,2007992,2009479,2009674,2010773	2004807,2005030,2005316,2007855,2009386,2009541,2010584,2011480	
chr8	2011520	2013705	2011880	2012992	-	Cre08.g368150.t1.1	Cre08.g368150.t1.1		2012982,2012553,2012423,2012212,2011520	2013705,2012869,2012452,2012235,2012126	
chr8	2014126	2015167	2014240	2014952	+	Cre08.g368176.t1.1	Cre08.g368176.t1.1		2014126,2014670	2014282,2015167	
chr8	2015169	2017998	2015974	2017775	-	Cre08.g368200.t1.2	Cre08.g368200.t1.2		2017523,2017146,2015169	2017998,2017220,2016943	
chr8	2018096	2019852	2018364	2018557	+	Cre08.g368226.t1.1	Cre08.g368226.t1.1		2018096	2019852	
chr8	2020916	2025267	2021191	2024930	+	Cre08.g368250.t1.1	Cre08.g368250.t1.1		2020916,2021345,2021806,2022269,2022634,2022963,2023455,2024298,2024720	2021274,2021511,2021933,2022355,2022717,2023180,2023990,2024491,2025267	
chr8	2025269	2032705	2025778	2032623	-	HEL43	Cre08.g368300.t1.1		2031991,2031584,2031077,2030559,2029960,2029662,2029325,2028984,2028654,2028423,2028061,2027490,2027248,2027054,2026613,2026416,2026083,2025269	2032705,2031731,2031322,2030792,2030205,2029695,2029392,2029070,2028800,2028518,2028147,2027534,2027322,2027110,2026747,2026486,2026191,2025895	contains ResIII and HeliC domains
chr8	2032847	2041685	2032979	2041576	-	Cre08.g368350.t1.1	Cre08.g368350.t1.1		2041465,2040546,2040052,2039797,2039495,2039194,2038746,2038334,2038093,2037749,2037518,2037057,2036684,2036371,2036003,2035787,2035345,2034821,2034333,2033881,2033437,2032847	2041685,2041361,2040195,2039874,2039542,2039304,2038925,2038423,2038185,2037863,2037591,2037209,2036785,2036463,2036202,2035844,2035460,2035193,2034542,2034024,2033522,2033181	null-allele mutant was isolated (PMID 29743196)
chr8	2041816	2047163	2041900	2045932	+	NTR1	Cre08.g368400.t1.2		2041816,2042222,2042544,2043094,2043544,2044008,2044396,2044641,2045021,2045343,2045788	2041976,2042334,2042741,2043229,2043719,2044165,2044552,2044777,2045111,2045468,2047163	cytosolic selenoprotein; mammalian type (large TR); model is truncated due to UGA Sec codon, lacks a carboxy-terminal penultimate selenocysteine encoded by TGA (C terminal sequence Gly-Cys-Sec-Gly) [PMID: 12538901]; the sequence differs slightly from AAN32903 due to error in the latter
chr8	2047520	2050435	2047852	2050008	-	Cre08.g368450.t1.2	Cre08.g368450.t1.2		2049951,2049839,2049598,2049329,2048764,2048375,2047520	2050435,2049870,2049733,2049499,2048949,2048491,2048050	
chr8	2047520	2050143	2047852	2050008	-	Cre08.g368450.t2.1	Cre08.g368450.t2.1		2049951,2049839,2049598,2049329,2048764,2048375,2047520	2050143,2049870,2049733,2049499,2048949,2048491,2048050	
chr8	2050483	2051935	2050900	2051868	-	Cre08.g368500.t1.2	Cre08.g368500.t1.2		2051782,2051649,2050483	2051935,2051686,2051322	
chr8	2052060	2055735	2052265	2054757	+	Cre08.g368550.t1.1	Cre08.g368550.t1.1		2052060,2052564,2052866,2053147,2053366,2053763,2054011,2054611	2052365,2052691,2052932,2053175,2053467,2053788,2054369,2055735	
chr8	2077943	2081785	2078543	2081005	-	Cre08.g368600.t1.1	Cre08.g368600.t1.1		2080954,2080656,2080282,2079383,2077943	2081785,2080790,2080434,2080066,2079206	
chr8	2089806	2091757	2090296	2090980	+	Cre08.g368650.t1.2	Cre08.g368650.t1.2		2089806,2090528,2090908	2090359,2090752,2091757	
chr8	2091870	2096661	2092571	2096538	-	Cre08.g368700.t1.1	Cre08.g368700.t1.1		2095968,2095306,2094954,2094534,2094167,2093877,2093332,2092998,2091870	2096661,2095506,2095040,2094611,2094241,2093954,2093530,2093107,2092727	SET domain-containing methyltransferase; Similar to At1g143 F7A19.12, F16A14.25; putative ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [EC:2.1.1.127].  ChromoDB SDG3414
chr8	2096756	2102107	2096799	2101569	+	Cre08.g368750.t1.1	Cre08.g368750.t1.1		2096756,2097265,2097557,2098508,2099334,2100931,2101461	2097064,2097377,2097919,2099167,2100767,2101056,2102107	
chr8	2102110	2104915	2102945	2104073	-	Cre08.g368800.t1.2	Cre08.g368800.t1.2		2104530,2103695,2103469,2102110	2104915,2104095,2103552,2103143	
chr8	2102110	2105235	2102945	2104073	-	Cre08.g368800.t2.1	Cre08.g368800.t2.1		2104530,2103695,2103469,2102110	2105235,2104095,2103552,2103143	
chr8	2107426	2109912	2107569	2109328	+	Cre08.g368850.t1.2	Cre08.g368850.t1.2		2107426,2108133,2108651,2109139	2107654,2108533,2108734,2109912	
chr8	2109950	2123205	2110723	2123013	-	TSA2	Cre08.g368900.t1.2		2122961,2122771,2122251,2121894,2121371,2120897,2120343,2119820,2119387,2119056,2118541,2118224,2117856,2117399,2116823,2116281,2115771,2115231,2114627,2114154,2113751,2113258,2112724,2112342,2111920,2111521,2111163,2109950	2123205,2122857,2122321,2121967,2121446,2121103,2120522,2119887,2119428,2119140,2118654,2118337,2117980,2117549,2116911,2116432,2115829,2115377,2114698,2114224,2113868,2113398,2112807,2112422,2111988,2111610,2111237,2110921	
chr8	2109950	2123205	2110723	2123013	-	TSA2	Cre08.g368900.t2.1		2122961,2122771,2122251,2121894,2121371,2120897,2120343,2119820,2119056,2118541,2118224,2117856,2117399,2116823,2116281,2115771,2115231,2114627,2114154,2113751,2113258,2112724,2112342,2111920,2111521,2111163,2109950	2123205,2122857,2122321,2121967,2121446,2121103,2120522,2119887,2119140,2118654,2118337,2117980,2117549,2116911,2116432,2115829,2115377,2114698,2114224,2113868,2113398,2112807,2112422,2111988,2111610,2111237,2110921	
chr8	2123316	2128255	2123411	2127499	+	DHQS	Cre08.g368950.t1.2		2123316,2124296,2124666,2125181,2125650,2126030,2126437,2126942,2127358	2123875,2124392,2124794,2125279,2125747,2126132,2126610,2127067,2128255	Putative 3-dehydroquinate synthase; catalyzes conversion of 3-deoxy-arabino-heptulosonate-7-phosphate to dehydroquinate in the chorismate biosynthesis pathway. Predicted plastid location by Target-P and by homology.  Previously annotated as DHQS
chr8	2128446	2131557	2128538	2131086	+	Cre08.g369000.t1.1	Cre08.g369000.t1.1		2128446,2129131,2129522,2130005,2130243,2130562,2130954	2128868,2129315,2129678,2130034,2130377,2130681,2131557	
chr8	2131644	2133545	2132256	2132937	-	Cre08.g369050.t1.2	Cre08.g369050.t1.2		2132886,2132483,2131644	2133545,2132710,2132328	
chr8	2134666	2136591	2135289	2135978	+	Cre08.g369100.t1.2	Cre08.g369100.t1.2		2134666,2135528,2135906	2135352,2135755,2136591	
chr8	2137068	2147205	2138029	2147110	-	Cre08.g369150.t1.1	Cre08.g369150.t1.1		2147075,2146894,2146783,2146414,2145688,2145323,2144797,2144395,2143944,2143462,2142891,2142554,2141935,2141266,2140960,2140626,2140164,2139703,2139324,2138935,2138516,2137068	2147205,2146982,2146827,2146593,2145992,2145471,2144843,2144465,2144069,2143494,2142994,2142643,2142029,2141389,2141018,2140716,2140253,2139777,2139453,2138982,2138665,2138218	
chr8	2147260	2152025	2147825	2151693	-	Cre08.g369200.t1.1	Cre08.g369200.t1.1		2151597,2151300,2150077,2149525,2149039,2147260	2152025,2151431,2150994,2149986,2149149,2148785	
chr8	2152346	2156217	2152584	2155777	+	FAP400	Cre08.g369250.t1.2		2152346,2153954,2154830,2155102	2153670,2154485,2154903,2156217	Found in Cr and Volvox but not strongly conserved elsewhere
chr8	2156219	2161505	2156911	2161496	-	PFH16	Cre08.g369300.t1.2		2161395,2161196,2160722,2160093,2159648,2159329,2159038,2158519,2158049,2157555,2157296,2156219	2161505,2161305,2160834,2160203,2159718,2159392,2159091,2158652,2158070,2157658,2157326,2156983	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate; contains C-terminal ShK domain
chr8	2161552	2163463	2162202	2163285	-	Cre08.g369350.t1.1	Cre08.g369350.t1.1		2163269,2162831,2162406,2161552	2163463,2162913,2162483,2162268	
chr8	2163586	2165737	2163693	2165055	+	Cre08.g369400.t1.2	Cre08.g369400.t1.2		2163586,2164054,2164296,2164554,2164953	2163891,2164102,2164336,2164652,2165737	
chr8	2165900	2170205	2166598	2169106	-	Cre08.g369451.t1.1	Cre08.g369451.t1.1		2169512,2169077,2166885,2165900	2170205,2169171,2168569,2166648	
chr8	2170690	2171625	2171080	2171537	-	Cre08.g369500.t1.2	Cre08.g369500.t1.2		2170690	2171625	
chr8	2173028	2174985	2173566	2174240	-	Cre08.g369550.t1.2	Cre08.g369550.t1.2		2174177,2173786,2173028	2174985,2174010,2173638	
chr8	2176734	2183182	2177497	2183049	-	MFT2	Cre08.g369600.t1.1		2182852,2182310,2181773,2181447,2180828,2180349,2180099,2179389,2179110,2178710,2178186,2176734	2183182,2182421,2181898,2181501,2181210,2180426,2180140,2179731,2179219,2178811,2178315,2177904	putative MATE efflux family protein, related to Arabidopsis MATE family protein
chr8	2183327	2196318	2183441	2195540	+	Cre08.g369650.t1.1	Cre08.g369650.t1.1		2183327,2183856,2184514,2185813,2186271,2186901,2187916,2188281,2188886,2190708,2191994,2192411,2192871,2193263,2194325,2194822,2195411	2183525,2183931,2185388,2185892,2186463,2187542,2187966,2188331,2190427,2191667,2192094,2192576,2192935,2193911,2194450,2195007,2196318	
chr8	2196320	2198746	2197001	2198446	-	Cre08.g369667.t1.1	Cre08.g369667.t1.1		2198368,2196320	2198746,2197391	
chr8	2199141	2200406	2199474	2200349	-	Cre08.g369683.t1.1	Cre08.g369683.t1.1		2200331,2200003,2199141	2200406,2200071,2199867	
chr8	2200487	2204216	2201158	2203986	-	Cre08.g369700.t1.2	Cre08.g369700.t1.2		2203959,2203641,2203359,2202928,2202045,2200487	2204216,2203760,2203463,2203188,2202755,2201857	
chr8	2205580	2213456	2205923	2213201	-	Cre08.g369720.t1.1	Cre08.g369720.t1.1		2213150,2212850,2212462,2211197,2210835,2209501,2209084,2208684,2208489,2208056,2207783,2207537,2207344,2207278,2207047,2206452,2205580	2213456,2212992,2212556,2212261,2211036,2210663,2209282,2208806,2208548,2208311,2207892,2207630,2207405,2207284,2207212,2206951,2206316	
chr8	2205580	2213456	2205923	2213201	-	Cre08.g369720.t2.1	Cre08.g369720.t2.1		2213150,2212850,2212462,2211197,2210835,2209501,2209084,2208684,2208489,2208056,2207783,2207537,2207340,2207047,2206452,2205580	2213456,2212992,2212556,2212261,2211036,2210663,2209282,2208806,2208548,2208311,2207892,2207630,2207405,2207212,2206951,2206316	
chr8	2213541	2215806	2214816	2215312	-	Cre08.g369740.t1.1	Cre08.g369740.t1.1		2215246,2213541	2215806,2214966	
chr8	2214312	2215806	2214816	2215312	-	Cre08.g369740.t2.1	Cre08.g369740.t2.1		2215246,2214312	2215806,2214966	
chr8	2215997	2220202	2216556	2219817	+	DHS2	Cre08.g369800.t1.2		2215997,2217329,2217837,2218218,2218507,2218686,2219075,2219297,2219658	2216751,2217474,2217949,2218330,2218556,2218826,2219163,2219460,2220202	Transfers the aminobutyl moiety of spermidine to a specific lysine residue of eIF5A, forming deoxyhypusine (PMID: 17476569); deoxypusine will then be hydroxylated to generate the unusual aminoacid hypusine; an important mechanism controlling cell proliferation and growth (PMID: 16600425)
chr8	2220297	2230144	2220573	2229804	+	Cre08.g369850.t1.1	Cre08.g369850.t1.1		2220297,2220855,2221157,2221354,2221662,2221884,2222260,2222563,2222916,2223303,2223539,2224779,2225152,2226342,2226820,2227182,2227380,2227774,2228042,2228333,2228505,2228761,2229396	2220762,2221009,2221202,2221469,2221722,2222057,2222363,2222653,2223058,2223397,2224618,2224980,2226143,2226540,2226942,2227241,2227635,2227883,2228135,2228398,2228670,2229260,2230144	
chr8	2231527	2235253	2231756	2234572	+	Cre08.g369900.t1.2	Cre08.g369900.t1.2		2231527,2232279,2232554,2232998,2233882	2231783,2232386,2232814,2233696,2235253	
chr8	2235348	2243256	2236379	2243142	-	Cre08.g369950.t1.1	Cre08.g369950.t1.1		2242434,2241420,2239739,2238327,2237597,2237164,2235348	2243256,2242181,2241213,2239496,2237950,2237407,2237018	
chr8	2243499	2244666	2243562	2244085	-	Cre08.g369976.t1.1	Cre08.g369976.t1.1		2244210,2243977,2243499	2244666,2244094,2243691	
chr8	2245165	2255926	2247278	2255814	-	Cre08.g370000.t1.1	Cre08.g370000.t1.1		2253990,2253009,2251301,2249699,2248958,2248586,2248175,2247760,2245165	2255926,2253737,2252811,2251057,2249314,2248766,2248449,2247940,2247623	
chr8	2256617	2265813	2257616	2264630	+	Cre08.g370050.t1.1	Cre08.g370050.t1.1		2256617,2257565,2259950,2260797,2263674,2264529	2257250,2259710,2260573,2263525,2264287,2265813	
chr8	2265867	2267638	2265952	2266697	+	Cre08.g370083.t1.1	Cre08.g370083.t1.1		2265867,2266107,2266448	2265969,2266230,2267638	
chr8	2267821	2276826	2268494	2276414	-	Cre08.g370116.t1.1	Cre08.g370116.t1.1		2274290,2273533,2270351,2269553,2267821	2276826,2274156,2273298,2270145,2269312	
chr8	2281627	2291198	2281794	2289673	+	Cre08.g370150.t1.1	Cre08.g370150.t1.1		2281627,2283885,2285091,2286848,2288484,2289027,2289352	2283624,2284880,2286604,2288125,2288837,2289207,2291198	
chr8	2291200	2294968	2291767	2294612	-	Cre08.g370200.t1.2	Cre08.g370200.t1.2		2294807,2294497,2294208,2293980,2293624,2293220,2292856,2292644,2292243,2291200	2294968,2294620,2294366,2293989,2293788,2293341,2292995,2292706,2292338,2292037	
chr8	2291200	2295046	2291767	2294612	-	Cre08.g370200.t2.1	Cre08.g370200.t2.1		2294807,2294497,2294208,2293980,2293624,2293220,2292856,2292644,2292243,2291200	2295046,2294617,2294366,2293989,2293788,2293341,2292995,2292706,2292338,2292037	
chr8	2295255	2301896	2295576	2301857	-	Cre08.g370250.t1.2	Cre08.g370250.t1.2		2301705,2301285,2300821,2300694,2300406,2300107,2299288,2298885,2297977,2297385,2297017,2296625,2295881,2295255	2301896,2301423,2300961,2300729,2300465,2300184,2299697,2298974,2298568,2297747,2297082,2296681,2296462,2295729	
chr8	2295255	2301896	2295576	2301857	-	Cre08.g370250.t2.1	Cre08.g370250.t2.1		2301705,2301285,2300821,2300406,2300107,2299288,2298885,2297977,2297385,2297017,2296625,2295881,2295255	2301896,2301423,2300961,2300465,2300184,2299697,2298974,2298568,2297747,2297082,2296681,2296462,2295729	
chr8	2301951	2303212	2302030	2303083	-	Cre08.g370300.t1.2	Cre08.g370300.t1.2		2303008,2302835,2301951	2303212,2302931,2302173	
chr8	2303307	2307516	2303367	2307053	+	Cre08.g370350.t1.2	Cre08.g370350.t1.2		2303307,2303828,2304318,2304655,2305075,2305373,2305823,2306164,2306365,2306596,2306869	2303481,2303910,2304372,2304765,2305160,2305574,2305902,2306213,2306419,2306649,2307516	
chr8	2308627	2310188	2308894	2310098	+	CYCB1	Cre08.g370401.t1.1		2308627,2309098,2309227,2309665,2309918,2310083	2309016,2309167,2309601,2309733,2310004,2310188	Probable essential activator of CDKB1; ts-lethal mutations block before mitosis (PMID 29367304). v5 annotation of last exon is incorrect: chr8 2310083:2310188 (last exon in annotation) should be substituted with exon 2310321:2311564 (currently annotated as comprising 3UT of Cre08.g370450). This change is justified by EST evidence in Phytozome; by reconstruction of complete cyclin B homology; and by isolation of ts-lethal mutations in the longer exonic sequence. PMID: 29367304
chr8	2310191	2314326	2311078	2314227	-	MGE1	Cre08.g370450.t1.2		2313906,2313223,2312702,2312187,2311676,2311340,2310191	2314326,2313327,2312779,2312276,2311804,2311436,2311078	mitochondrial grpE-type co-chaperone of the HSP70 system; probable co-chaperone of the HSP70C chaperone; assists matrix Hsp70 in both protein translocation across the mitochondrial membranes and subsequent protein folding; similar to At4g26780 and At5g55200
chr8	2314457	2319468	2314697	2317864	+	Cre08.g370500.t1.1	Cre08.g370500.t1.1		2314457,2315593,2316058,2316590,2317113,2317451,2317798	2315266,2315836,2316177,2316661,2317190,2317522,2319468	
chr8	2319481	2325956	2320303	2325793	-	Cre08.g370550.t1.1	Cre08.g370550.t1.1		2325647,2325026,2324755,2324051,2323629,2323255,2322932,2322470,2321891,2321245,2321076,2320708,2319481	2325956,2325089,2324904,2324144,2323716,2323484,2323054,2322765,2322002,2321357,2321171,2320766,2320523	
chr8	2326041	2334746	2326819	2334584	-	Cre08.g370601.t1.1	Cre08.g370601.t1.1		2334533,2333853,2333358,2332709,2332227,2331839,2331378,2331010,2330751,2330279,2329850,2329329,2328924,2328535,2328274,2327729,2327349,2326041	2334746,2334293,2333507,2333081,2332364,2331919,2331446,2331128,2330820,2330397,2329976,2329420,2329034,2328610,2328326,2327877,2327487,2327038	
chr8	2334797	2339546	2335667	2339303	-	PGL2	Cre08.g370650.t1.2		2339253,2338938,2338555,2337690,2337392,2337074,2336721,2336364,2334797	2339546,2339101,2338628,2337815,2337517,2337127,2336799,2336503,2335892	
chr8	2340245	2344336	2340922	2343707	-	Cre08.g370700.t1.2	Cre08.g370700.t1.2		2343634,2343287,2342692,2342393,2341978,2341195,2340245	2344336,2343406,2342816,2342460,2342049,2341726,2340979	
chr8	2344497	2356334	2344860	2354749	+	Cre08.g370750.t1.1	Cre08.g370750.t1.1		2344497,2345530,2346202,2347924,2348683,2349898,2352338,2354264,2354670	2345298,2345798,2347528,2348271,2348991,2352059,2353897,2354440,2356334	
chr8	2344497	2356334	2344860	2354749	+	Cre08.g370750.t2.1	Cre08.g370750.t2.1		2344497,2345530,2346202,2347924,2348683,2349901,2352338,2354264,2354670	2345298,2345798,2347528,2348271,2348991,2352059,2353897,2354440,2356334	
chr8	2370260	2373856	2371573	2373743	-	UBC18	Cre08.g370850.t1.1		2373719,2373561,2373390,2373217,2372539,2372118,2370260	2373856,2373645,2373498,2373295,2372643,2372242,2371610	ts-lethal mutant was isolated (PMID 29743196)
chr8	2374998	2380967	2375607	2380635	-	Cre08.g370900.t1.1	Cre08.g370900.t1.1		2380541,2380017,2379632,2378970,2378454,2378114,2377726,2377279,2376810,2376469,2375953,2374998	2380967,2380403,2379725,2379089,2378723,2378165,2377847,2377348,2377016,2376602,2376147,2375713	
chr8	2383508	2385040	2383740	2384463	+	Cre08.g370950.t1.2	Cre08.g370950.t1.2		2383508,2383997,2384403	2383800,2384221,2385040	
chr8	2385188	2396937	2385593	2396707	-	Cre08.g371000.t1.1	Cre08.g371000.t1.1		2396617,2395814,2395551,2395088,2394643,2393923,2393367,2392928,2392387,2391950,2391537,2391154,2390677,2390116,2389741,2388429,2387230,2386379,2385970,2385188	2396937,2396123,2395618,2395195,2394846,2394391,2393581,2392974,2392453,2392052,2391670,2391228,2390718,2390226,2389809,2388716,2387974,2386859,2386098,2385801	
chr8	2397038	2410519	2397236	2409216	+	Cre08.g371052.t1.1	Cre08.g371052.t1.1		2397038,2397814,2398130,2398582,2399172,2399655,2399978,2400384,2401857,2402455,2403115,2403830,2404493,2404848,2405224,2405571,2406038,2406441,2407032,2407493,2408124	2397325,2397901,2398177,2398788,2399391,2399734,2400169,2401662,2401996,2402549,2403195,2403932,2404627,2404947,2405324,2405701,2406183,2406552,2407119,2407759,2410519	ts-lethal mutant was isolated (PMID 29743196)
chr8	2397038	2410519	2397236	2409216	+	Cre08.g371052.t2.1	Cre08.g371052.t2.1		2397038,2397817,2398130,2398582,2399172,2399655,2399978,2400384,2401857,2402455,2403115,2403830,2404493,2404848,2405224,2405571,2406038,2406441,2407032,2407493,2408124	2397325,2397901,2398177,2398788,2399391,2399734,2400169,2401662,2401996,2402549,2403195,2403932,2404627,2404947,2405324,2405701,2406183,2406552,2407119,2407759,2410519	ts-lethal mutant was isolated (PMID 29743196)
chr8	2410532	2412007	2410674	2411396	-	Cre08.g371150.t1.2	Cre08.g371150.t1.2		2411336,2410912,2410532	2412007,2411136,2410734	
chr8	2412788	2415379	2412934	2414819	+	Cre08.g371200.t1.2	Cre08.g371200.t1.2		2412788,2413213,2413584,2414316,2414611	2412967,2413275,2414011,2414444,2415379	
chr8	2415504	2417024	2416042	2416777	-	Cre08.g371250.t1.1	Cre08.g371250.t1.1		2416717,2416292,2415504	2417024,2416516,2416102	
chr8	2418228	2420609	2418314	2420355	+	Cre08.g371301.t1.1	Cre08.g371301.t1.1		2418228,2419099,2419805,2420094,2420338	2418831,2419516,2419933,2420161,2420609	null-allele mutant was isolated (PMID 29743196)
chr8	2420733	2422777	2421267	2421988	-	Cre08.g371350.t1.2	Cre08.g371350.t1.2		2421928,2421504,2420733	2422777,2421728,2421327	
chr8	2423735	2429957	2425813	2429762	-	CPL16	Cre08.g371400.t1.1		2429646,2429425,2429046,2427431,2427045,2426707,2423735	2429957,2429563,2429109,2427696,2427174,2426778,2425938	Conserved in the Plant Lineage
chr8	2430082	2433160	2430210	2432093	+	COPZ1	Cre08.g371450.t1.2		2430082,2430382,2430614,2430951,2431564,2432033	2430308,2430458,2430761,2431028,2431681,2433160	Zeta-COP, subunit of COP-I complex involved in vesicle trafficking
chr8	2430082	2433160	2430210	2432093	+	COPZ1	Cre08.g371450.t2.1		2430082,2430382,2430614,2430951,2431564,2432033	2430308,2430458,2430761,2431028,2431657,2433160	Zeta-COP, subunit of COP-I complex involved in vesicle trafficking
chr8	2433162	2434817	2433785	2434697	-	Cre08.g371500.t1.1	Cre08.g371500.t1.1		2434530,2433162	2434817,2434182	
chr8	2435422	2437047	2436400	2437015	-	Cre08.g371533.t1.1	Cre08.g371533.t1.1		2437000,2436851,2435422	2437047,2436937,2436478	
chr8	2437158	2440307	2437698	2438479	+	Cre08.g371566.t1.1	Cre08.g371566.t1.1		2437158,2437374	2437189,2440307	
chr8	2440342	2448177	2441668	2447808	-	Cre08.g371600.t1.2	Cre08.g371600.t1.2		2447715,2446964,2446454,2445735,2445226,2444734,2440342	2448177,2447182,2446526,2446039,2445333,2445066,2444440	
chr8	2448679	2452677	2449642	2452582	-	TATB	Cre08.g371650.t1.2		2452413,2452279,2452086,2451705,2450540,2449967,2448679	2452677,2452322,2452181,2451767,2450639,2450178,2449720	The TAT translocon translocates proteins with a Twin Arginine Transit peptide through the thylakoid membrane
chr8	2452798	2456199	2452828	2456160	+	Cre08.g371700.t1.1	Cre08.g371700.t1.1		2452798,2453111,2453850,2454627,2455016,2455583,2455862,2456144	2452890,2453244,2453917,2454741,2455147,2455662,2456061,2456199	
chr8	2471358	2473679	2471433	2472764	+	Cre08.g371751.t1.1	Cre08.g371751.t1.1		2471358,2471750,2472503	2471520,2472214,2473679	
chr8	2475408	2479028	2475913	2478028	+	Cre08.g371800.t1.2	Cre08.g371800.t1.2		2475408,2476295,2476540,2477172	2476159,2476438,2476958,2479028	
chr8	2481392	2483587	2481714	2482827	-	Cre08.g371801.t1.2	Cre08.g371801.t1.2		2482560,2482282,2482058,2481392	2483587,2482479,2482177,2481969	
chr8	2484628	2485649	2484991	2485502	+	Cre08.g371840.t1.1	Cre08.g371840.t1.1		2484628,2485430	2485348,2485649	
chr8	2486242	2488597	2486671	2487435	-	Cre08.g371879.t1.1	Cre08.g371879.t1.1		2487805,2487060,2486242	2488597,2487446,2486842	
chr8	2490928	2492969	2491389	2491838	+	Cre08.g371918.t1.1	Cre08.g371918.t1.1		2490928,2491705	2491481,2492969	
chr8	2494542	2509457	2495905	2509290	-	RAPTOR	Cre08.g371957.t1.1		2509194,2509050,2508662,2506207,2505861,2505417,2504931,2504345,2503981,2503559,2503100,2502640,2502121,2501680,2500969,2500543,2499944,2499416,2498845,2498129,2497538,2497162,2496437,2494542	2509457,2509115,2508890,2506325,2505983,2505545,2505032,2504542,2504103,2503640,2503194,2502768,2502195,2501811,2501127,2500845,2500078,2499491,2499123,2498658,2497694,2497309,2496593,2496157	Subunit of TORC1; TORC1 is a rapamycin-sensitive complex involved in growth control; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors
chr8	2509558	2514419	2509598	2513453	+	CGLD6	Cre08.g372000.t1.2		2509558,2510289,2510839,2511587,2511975,2512492,2512961,2513372	2509853,2510399,2510925,2511649,2512075,2512594,2513116,2514419	
chr8	2514588	2517610	2514810	2516882	+	Cre08.g372050.t1.2	Cre08.g372050.t1.2		2514588,2515172	2514960,2517610	
chr8	2518227	2522077	2519030	2521987	-	HSP70A	Cre08.g372100.t1.2		2521937,2521740,2521523,2521287,2520991,2519574,2518227	2522077,2521866,2521664,2521447,2521091,2520646,2519332	HSP70A is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; HSP70A is localized to the cytosol and to flagella; it is inducible by heat shock and light [PMID: 2779571, 1541398, 16151252, 16143837]. Found in the flagellar proteome [PMID: 15998802]
chr8	2523818	2526949	2524059	2526371	+	Cre08.g372150.t1.2	Cre08.g372150.t1.2		2523818,2524607,2524979,2525406,2525665,2526315	2524311,2524743,2525045,2525534,2525851,2526949	
chr8	2529268	2530757	2529969	2530648	-	Cre08.g372200.t1.2	Cre08.g372200.t1.2		2530618,2530404,2529268	2530757,2530487,2530119	
chr8	2530911	2541535	2532355	2541460	-	Cre08.g372250.t1.2	Cre08.g372250.t1.2		2541262,2540315,2539903,2539519,2539096,2538404,2537931,2537595,2537104,2536676,2536162,2535676,2535370,2534995,2534611,2534293,2533760,2533342,2533000,2532724,2530911	2541535,2540482,2539984,2539582,2539216,2538508,2538080,2537684,2537229,2536792,2536269,2535790,2535419,2535099,2534691,2534355,2533891,2533424,2533078,2532768,2532394	
chr8	2541656	2547297	2541920	2545968	+	Cre08.g372300.t1.2	Cre08.g372300.t1.2		2541656,2543472,2544719,2545073,2545417,2545723	2543180,2544351,2544826,2545194,2545561,2547297	
chr8	2547461	2550289	2548809	2550226	-	FAP188	Cre08.g372350.t1.1		2550127,2549968,2549778,2549466,2547461	2550289,2550036,2549813,2549570,2549271	Flagellar Associated Protein, found in the flagellar proteome
chr8	2550426	2553607	2550610	2552900	+	UBC19	Cre08.g372400.t1.2		2550426,2550948,2551379,2552020,2552393	2550667,2551025,2551531,2552088,2553607	
chr8	2553650	2556775	2555237	2556409	-	PSBQ	Cre08.g372450.t1.2		2556550,2556359,2556159,2555942,2555671,2553650	2556775,2556481,2556201,2556072,2555808,2555475	gi:131395; gi:18164
chr8	2556920	2573025	2557662	2572878	-	Cre08.g372500.t1.2	Cre08.g372500.t1.2		2572719,2572128,2571802,2571083,2570600,2570157,2569788,2568744,2568150,2567264,2566709,2566084,2565587,2565001,2564107,2562853,2562279,2561547,2561170,2560729,2560089,2559616,2558953,2558559,2557980,2556920	2573025,2572343,2571903,2571623,2570769,2570348,2569925,2568908,2568476,2567367,2566982,2566224,2565675,2565256,2564624,2563088,2562400,2561630,2561291,2560864,2560210,2559821,2559169,2558656,2558077,2557812	
chr8	2573155	2575841	2573278	2575286	+	CDKB1	Cre08.g372550.t1.1		2573155,2573649,2573808,2574009,2574335,2574595,2574869,2575163	2573475,2573700,2573897,2574182,2574445,2574704,2574986,2575841	Plant specific cyclin dependent kinase; CDKB subfamily; PSTTLRE motif; mitotic regulator; putative function in G2/M. ts lethal mutants block in G2 (PMID 25336509)
chr8	2576363	2579335	2576963	2579237	-	Cre08.g372600.t1.2	Cre08.g372600.t1.2		2577485,2576363	2579335,2577242	
chr8	2579410	2582515	2579973	2582317	-	Cre08.g372650.t1.2	Cre08.g372650.t1.2		2581802,2580684,2579410	2582515,2581638,2580456	
chr8	2584030	2587395	2584630	2587310	-	Cre08.g372716.t1.2	Cre08.g372716.t1.2		2587295,2585688,2584814,2584030	2587395,2587193,2585451,2584630	
chr8	2587443	2591125	2588303	2591023	-	Cre08.g372750.t1.1	Cre08.g372750.t1.1		2590503,2589624,2589048,2588615,2587443	2591125,2590222,2589360,2588787,2588420	
chr8	2591266	2606190	2591399	2605380	+	Cre08.g372800.t1.1	Cre08.g372800.t1.1		2591266,2591580,2592479,2592806,2594651,2594982,2595448,2595764,2596914,2597344,2597713,2598015,2598387,2598825,2599207,2599587,2600167,2600830,2601273,2601727,2601990,2602510,2602957,2603275,2603652,2604097,2605281	2591444,2592113,2592556,2592928,2594770,2595155,2595603,2596084,2597076,2597444,2597787,2598140,2598530,2598876,2599307,2599703,2600346,2600974,2601340,2601851,2602053,2602686,2603034,2603346,2603797,2604157,2606190	CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs
chr8	2608076	2610901	2608215	2610301	+	Cre08.g372850.t1.2	Cre08.g372850.t1.2		2608076,2608630,2609228,2609729,2610103	2608418,2608723,2609375,2609769,2610901	
chr8	2610920	2619635	2611752	2619535	-	VFL1	Cre08.g372900.t1.1		2618965,2617831,2617388,2616965,2616500,2616251,2615925,2615554,2615163,2614577,2614282,2613992,2613406,2613116,2612714,2612324,2610920	2619635,2618788,2617526,2617084,2616713,2616346,2616089,2615628,2615234,2614744,2614323,2614081,2613612,2613187,2612826,2612493,2612132	Mutations alter number and position of basal bodies. Protein localizes to basal bodies and probasal bodies.
chr8	2619776	2624118	2619824	2623322	+	IDS1	Cre08.g372950.t1.2		2619776,2620519,2620932,2621415,2621741,2622163,2623238	2619930,2620616,2621075,2621504,2621854,2622924,2624118	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (isopentenyl diphosphate/dimethylallyl diphosphate synthase) (ispH) (lytB) [PMID:11004185]; chloroplast precursor
chr8	2624226	2628317	2624362	2627462	+	Cre08.g373000.t1.2	Cre08.g373000.t1.2		2624226,2626420,2627447	2626201,2626716,2628317	
chr8	2629396	2653256	2629856	2652856	+	BCC3	Cre08.g373050.t1.1		2629396,2630161,2630799,2631338,2631694,2632107,2632464,2632900,2633358,2635273,2635743,2636213,2636797,2637140,2637852,2638368,2638791,2639182,2639655,2640308,2640719,2641114,2641393,2641799,2642269,2643042,2643556,2644900,2645676,2646654,2647322,2648041,2648385,2648835,2649272,2649728,2650368,2650772,2651271,2651630,2652604	2629993,2630361,2630868,2631439,2631788,2632209,2632643,2632959,2633489,2635461,2635889,2636360,2636886,2637258,2637980,2638565,2638970,2639271,2640023,2640394,2640795,2641132,2641455,2641972,2642729,2643292,2644604,2645221,2646254,2646976,2647489,2648181,2648560,2648949,2649509,2650026,2650505,2650897,2651374,2652368,2653256	Acetyl-CoA biotin carboxylase/carboxyl carrier; May contain additional coding sequence in intronic N-island PMID: 27175017; ts-lethal mutant was isolated (PMID 29743196)
chr8	2653596	2661147	2653666	2660579	+	CYP97C3	Cre08.g373100.t1.1		2653596,2653980,2654455,2655029,2655316,2655800,2656377,2656649,2656988,2657344,2657711,2658166,2658355,2659029,2659475,2659967,2660453	2653807,2654081,2654572,2655138,2655407,2655920,2656454,2656711,2657035,2657446,2657872,2658203,2658546,2659103,2659542,2660090,2661147	Probabale carotenoid hydroxylase
chr8	2661154	2665005	2661705	2664827	-	Cre08.g373150.t1.1	Cre08.g373150.t1.1		2662712,2661154	2665005,2662467	
chr8	2665182	2684155	2666173	2683441	-	Cre08.g373200.t1.2	Cre08.g373200.t1.2		2683947,2683836,2683685,2683441,2683296,2683012,2682819,2682452,2682279,2682165,2682027,2681682,2681371,2680964,2680632,2680317,2680025,2679652,2679403,2679236,2678822,2678464,2678245,2677946,2677588,2677367,2677046,2676687,2676391,2676097,2675841,2675669,2675387,2674963,2674236,2673578,2673342,2673142,2672963,2672703,2672461,2672286,2672028,2671809,2671555,2671205,2670764,2670440,2670102,2669526,2669284,2669104,2668730,2668413,2668085,2667729,2667468,2667081,2666403,2665182	2684155,2683870,2683726,2683517,2683334,2683059,2682864,2682577,2682323,2682189,2682070,2681848,2681481,2681098,2680757,2680477,2680127,2679746,2679490,2679286,2678998,2678661,2678334,2678116,2677768,2677441,2677185,2676842,2676563,2676170,2675971,2675723,2675537,2675152,2674736,2674067,2673420,2673200,2673000,2672753,2672478,2672296,2672111,2671867,2671647,2671331,2670803,2670583,2670206,2669915,2669391,2669142,2668804,2668499,2668192,2667893,2667541,2667198,2666498,2666281	null-allele passenger mutation was isolated (PMID 29743196)
chr8	2684255	2686965	2684678	2685511	-	Cre08.g373225.t1.1	Cre08.g373225.t1.1		2686708,2685457,2684255	2686965,2685526,2685107	
chr8	2688040	2690457	2688181	2689884	+	POA2	Cre08.g373250.t1.2		2688040,2688454,2689172,2689547,2689836	2688196,2688805,2689347,2689663,2690457	(PSA2) 20S proteasome alpha subunit B (type 2)
chr8	2692638	2698460	2692852	2697733	+	MAPKKK1	Cre08.g373300.t1.1		2692638,2693521,2693808,2694071,2694395,2694628,2694840,2695209,2695446,2695716,2695902,2696216,2696407,2696594,2696796,2697136	2693215,2693680,2693908,2694294,2694528,2694730,2695099,2695330,2695585,2695769,2696056,2696277,2696481,2696657,2697025,2698460	Mitogen-Activated Protein Kinase Kinase Kinase 1 (MAP Kinase Kinase Kinase 1)(MEK Kinase 1) (MEKK1). First kinase in the canonical MAP Kinase pathway
chr8	2721720	2724354	2724129	2724319	-	Cre08.g373341.t1.1	Cre08.g373341.t1.1		2721720	2724354	
chr8	2724429	2727384	2727030	2727340	-	Cre08.g373342.t1.1	Cre08.g373342.t1.1		2724429	2727384	
chr8	2727467	2730844	2730348	2730817	-	Cre08.g373343.t1.1	Cre08.g373343.t1.1		2730809,2730582,2727467	2730844,2730627,2730483	
chr8	2743245	2745806	2743791	2745317	+	Cre08.g373344.t1.1	Cre08.g373344.t1.1		2743245,2745306	2745046,2745806	
chr8	2756209	2759664	2759131	2759467	-	Cre08.g373345.t1.1	Cre08.g373345.t1.1		2759409,2756209	2759664,2759247	
chr8	2763056	2765294	2763523	2765086	-	Cre08.g373346.t1.1	Cre08.g373346.t1.1		2764984,2764910,2764534,2764201,2764045,2763056	2765294,2764919,2764855,2764482,2764142,2763990	
chr8	2782705	2785513	2783085	2785192	+	Cre08.g373347.t1.1	Cre08.g373347.t1.1		2782705,2783464,2784447,2784985	2783109,2783913,2784533,2785513	
chr8	2789939	2793734	2792690	2793704	-	Cre08.g373348.t1.1	Cre08.g373348.t1.1		2793648,2793153,2789939	2793734,2793321,2792840	
chr8	2789939	2793104	2792690	2792952	-	Cre08.g373348.t2.1	Cre08.g373348.t2.1		2792919,2789939	2793104,2792840	
chr8	2793399	2798684	2793961	2797410	-	Cre08.g373349.t1.1	Cre08.g373349.t1.1		2798094,2797782,2797283,2796808,2796473,2796210,2795930,2795695,2795185,2794966,2794664,2794249,2793399	2798684,2797874,2797472,2796902,2796512,2796276,2795984,2795789,2795366,2795097,2794707,2794412,2794019	
chr8	2793399	2797884	2793961	2797410	-	Cre08.g373349.t2.1	Cre08.g373349.t2.1		2797758,2797283,2796808,2796473,2796210,2795930,2795695,2795185,2794966,2794664,2794249,2793399	2797884,2797472,2796902,2796512,2796276,2795984,2795789,2795366,2795097,2794707,2794412,2794019	
chr8	2795149	2798684	2795279	2797410	-	Cre08.g373349.t3.1	Cre08.g373349.t3.1		2798094,2797782,2797283,2796808,2796473,2796210,2795930,2795149	2798684,2797874,2797472,2796902,2796512,2796276,2795984,2795366	
chr8	3144120	3145565	3144139	3145523	-	Cre08.g373350.t1.2	Cre08.g373350.t1.2		3144120	3145565	
chr8	2820105	2823517	2821543	2822897	+	Cre08.g373351.t1.1	Cre08.g373351.t1.1		2820105,2821375,2822456,2822892	2820894,2821723,2822726,2823517	
chr8	2824865	2826867	2825106	2826446	+	Cre08.g373352.t1.1	Cre08.g373352.t1.1		2824865,2825913,2826106,2826434	2825385,2826036,2826293,2826867	
chr8	2826889	2828414	2826911	2828097	-	Cre08.g373353.t1.1	Cre08.g373353.t1.1		2826889	2828414	
chr8	2828509	2833054	2829511	2832783	-	Cre08.g373354.t1.1	Cre08.g373354.t1.1		2831598,2831326,2831143,2830772,2830136,2828509	2833054,2831513,2831250,2831081,2830666,2830030	
chr8	2833349	2835924	2834231	2835811	-	Cre08.g373355.t1.1	Cre08.g373355.t1.1		2835710,2835315,2834556,2833349	2835924,2835406,2834998,2834270	
chr8	2835979	2842184	2838308	2842108	-	Cre08.g373356.t1.1	Cre08.g373356.t1.1		2842078,2841588,2841224,2840869,2840401,2840190,2839352,2838907,2835979	2842184,2841793,2841335,2840875,2840708,2840322,2840094,2838999,2838809	
chr8	2842345	2844419	2842984	2843973	+	Cre08.g373357.t1.1	Cre08.g373357.t1.1		2842345,2842896,2843634,2843973	2842651,2843383,2843742,2844419	
chr8	2848925	2850600	2849201	2849526	+	Cre08.g373358.t1.1	Cre08.g373358.t1.1		2848925,2849465	2849332,2850600	
chr8	2850909	2852724	2851255	2852071	-	Cre08.g373359.t1.1	Cre08.g373359.t1.1		2852034,2851815,2851632,2850909	2852724,2851977,2851760,2851574	
chr8	2853215	2854317	2853505	2854295	+	Cre08.g373360.t1.1	Cre08.g373360.t1.1		2853215	2854317	
chr8	2854319	2857304	2854353	2857022	-	Cre08.g373361.t1.1	Cre08.g373361.t1.1		2855192,2854920,2854737,2854319	2857304,2855107,2854844,2854675	
chr8	2875748	2881124	2877421	2880526	-	Cre08.g373362.t1.1	Cre08.g373362.t1.1		2880486,2879867,2879385,2878773,2878372,2878175,2875748	2881124,2880418,2879678,2879107,2878619,2878203,2877447	
chr8	2893783	2895644	2894541	2894722	+	Cre08.g373363.t1.1	Cre08.g373363.t1.1		2893783	2895644	
chr8	2896563	2900084	2896878	2899726	+	Cre08.g373364.t1.1	Cre08.g373364.t1.1		2896563,2897264,2897728,2898434,2899350,2899597	2897135,2897565,2898219,2899267,2899435,2900084	
chr8	2911360	2914292	2911948	2914111	-	Cre08.g373365.t1.1	Cre08.g373365.t1.1		2913503,2913243,2912879,2912558,2912306,2911360	2914292,2913316,2913102,2912740,2912377,2912104	
chr8	2917305	2922582	2918976	2921980	-	Cre08.g373366.t1.1	Cre08.g373366.t1.1		2921940,2921792,2921381,2920899,2920578,2919886,2919504,2919125,2917305	2922582,2921872,2921683,2921192,2920621,2920133,2919724,2919181,2919002	
chr8	3002087	3007972	3004689	3007304	-	Cre08.g373367.t1.1	Cre08.g373367.t1.1		3007241,3005997,3005227,3002087	3007972,3006088,3005709,3004768	
chr8	3010859	3013045	3012539	3012917	-	Cre08.g373368.t1.1	Cre08.g373368.t1.1		3012790,3010859	3013045,3012592	
chr8	3046356	3050817	3046876	3050730	+	Cre08.g373369.t1.1	Cre08.g373369.t1.1		3046356,3046870,3048147,3048838,3049544,3050606	3046517,3046933,3048675,3049329,3050066,3050817	
chr8	3059329	3062365	3061976	3062312	-	Cre08.g373370.t1.1	Cre08.g373370.t1.1		3062254,3059329	3062365,3062092	
chr8	3062726	3065543	3063120	3065070	+	Cre08.g373371.t1.1	Cre08.g373371.t1.1		3062726,3063489,3063772,3064093,3064387,3065046	3063177,3063578,3063960,3064209,3064839,3065543	
chr8	3074369	3076665	3075157	3076124	-	Cre08.g373372.t1.1	Cre08.g373372.t1.1		3075889,3074369	3076665,3075765	
chr8	3085726	3087260	3085872	3086672	+	Cre08.g373373.t1.1	Cre08.g373373.t1.1		3085726,3086667	3086083,3087260	
chr8	3100486	3106483	3101474	3105245	+	Cre08.g373374.t1.1	Cre08.g373374.t1.1		3100486,3101048,3101974,3102298,3102591,3102849,3103197,3103382,3103636,3103995,3104279,3104945,3105115	3100856,3101510,3102091,3102378,3102671,3102929,3103271,3103497,3103795,3104118,3104695,3104995,3106483	
chr8	3100486	3104717	3101474	3104700	+	Cre08.g373374.t2.1	Cre08.g373374.t2.1		3100486,3101048,3101974,3102298,3102591,3102849,3103197,3103382,3103636,3103995,3104279	3100856,3101510,3102091,3102378,3102671,3102929,3103271,3103497,3103795,3104118,3104717	
chr8	3106682	3108965	3107709	3108697	-	Cre08.g373375.t1.1	Cre08.g373375.t1.1		3108556,3106682	3108965,3107823	
chr8	3109636	3111047	3110293	3111009	+	Cre08.g373376.t1.1	Cre08.g373376.t1.1		3109636,3110549	3110388,3111047	
chr8	3124890	3129055	3125174	3128808	-	Cre08.g373377.t1.1	Cre08.g373377.t1.1		3128805,3127705,3126770,3125963,3125426,3124890	3129055,3128588,3127556,3126713,3125525,3125174	
chr8	3152550	3156605	3153270	3156467	-	CSU6	Cre08.g373400.t1.2		3156233,3155888,3154604,3153386,3152550	3156605,3156154,3155056,3154114,3153324	probably tranposon-derived
chr8	3160366	3161337	3160557	3161153	+	Cre08.g373407.t1.1	Cre08.g373407.t1.1		3160366,3160814	3160737,3161337	
chr8	3164860	3166085	3164978	3165492	-	Cre08.g373414.t1.1	Cre08.g373414.t1.1		3164860	3166085	
chr8	3187540	3191887	3187675	3191306	+	Cre08.g373421.t1.1	Cre08.g373421.t1.1		3187540,3188014,3188206,3188472,3190312,3191277	3187725,3188113,3188356,3189695,3190563,3191887	
chr8	3188552	3191887	3188674	3191306	+	Cre08.g373421.t2.1	Cre08.g373421.t2.1		3188552,3190312,3191277	3189695,3190563,3191887	
chr8	3193194	3195359	3193226	3194999	-	Cre08.g373428.t1.1	Cre08.g373428.t1.1		3194999,3193194	3195359,3194693	
chr8	3195480	3196617	3195545	3196156	+	Cre08.g373436.t1.1	Cre08.g373436.t1.1		3195480,3196076	3195933,3196617	
chr8	3200690	3211538	3200857	3209872	+	SBE4	Cre08.g373450.t1.1		3200690,3201044,3201341,3201927,3202453,3202948,3203350,3203630,3203902,3204342,3204665,3204905,3205748,3206271,3206729,3207077,3207880,3208264,3208657,3209156,3209743	3200972,3201146,3201506,3202102,3202711,3203080,3203443,3203702,3203952,3204391,3204719,3204979,3205788,3206409,3206761,3207145,3208002,3208323,3208752,3209314,3211538	catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position
chr8	3211610	3220381	3211849	3219811	+	Cre08.g373500.t1.1	Cre08.g373500.t1.1		3211610,3212875,3213321,3214180,3214569,3215606,3216148,3216872,3217492,3217878,3218362,3218837,3219321,3219637	3212374,3212971,3213679,3214268,3214953,3215976,3216456,3217290,3217559,3217980,3218456,3218939,3219415,3220381	
chr8	3220500	3225551	3220716	3225402	+	Cre08.g373550.t1.2	Cre08.g373550.t1.2		3220500,3221141,3221453,3221879,3222241,3222624,3222834	3220854,3221160,3221609,3221974,3222313,3222697,3225551	
chr8	3225576	3233179	3225937	3233074	-	ALB3.4	Cre08.g373583.t1.1		3233003,3231987,3230249,3229830,3228521,3228104,3227539,3226924,3226544,3225576	3233179,3232755,3230524,3229960,3228942,3228234,3227807,3227021,3226656,3226240	One of four proteins related to the Arabidopsis ALBINO3 and yeast OXA1 proteins
chr8	3225576	3233179	3225937	3233074	-	ALB3.4	Cre08.g373583.t2.1		3233003,3231987,3230249,3229830,3228521,3228104,3227539,3226924,3226544,3225576	3233179,3232752,3230524,3229960,3228942,3228234,3227807,3227021,3226656,3226240	One of four proteins related to the Arabidopsis ALBINO3 and yeast OXA1 proteins
chr8	3233280	3239157	3233452	3238489	+	Cre08.g373650.t1.1	Cre08.g373650.t1.1		3233280,3233977,3234439,3235444,3235955	3233797,3234144,3234768,3235666,3239157	
chr8	3241040	3269384	3241247	3267322	+	Cre08.g373688.t1.1	Cre08.g373688.t1.1		3241040,3243509,3244017,3244478,3244819,3245231,3245610,3248462,3251340,3251760,3252921,3253489,3253767,3254253,3254885,3259281,3259907,3260250,3260943,3261623,3264190,3267205	3243128,3243582,3244143,3244551,3244828,3245308,3248109,3251034,3251447,3252665,3253112,3253577,3253854,3254378,3254981,3259391,3259953,3260402,3261251,3263667,3266911,3269384	null-allele mutant was isolated (PMID 29743196)
chr8	3241040	3269384	3241247	3267322	+	Cre08.g373688.t2.1	Cre08.g373688.t2.1		3241040,3243509,3244017,3244478,3244819,3245231,3245610,3248462,3251340,3251760,3252921,3253489,3253767,3254253,3254885,3259281,3259907,3260250,3260943,3261623,3264190,3267208	3243128,3243582,3244143,3244551,3244828,3245308,3248109,3251034,3251447,3252665,3253112,3253577,3253854,3254378,3254981,3259391,3259953,3260402,3261251,3263667,3266911,3269384	null-allele mutant was isolated (PMID 29743196)
chr8	3269489	3277469	3270196	3277436	-	Cre08.g373726.t1.1	Cre08.g373726.t1.1		3274601,3272490,3269489	3277469,3274319,3271117	
chr8	3277570	3279642	3277598	3278796	+	Cre08.g373764.t1.1	Cre08.g373764.t1.1		3277570,3277663	3277605,3279642	
chr8	3305864	3308441	3305873	3308405	+	Cre08.g373802.t1.1	Cre08.g373802.t1.1		3305864,3306471,3307896	3306360,3307841,3308441	
chr8	3308454	3310049	3308471	3309930	-	Cre08.g373840.t1.1	Cre08.g373840.t1.1		3309756,3309327,3308716,3308454	3310049,3309435,3309047,3308474	
chr8	3310260	3315247	3310736	3314869	+	Cre08.g373878.t1.1	Cre08.g373878.t1.1		3310260,3313191,3314864	3312920,3314523,3315247	
chr8	3315294	3330889	3315996	3330730	-	Cre08.g373916.t1.1	Cre08.g373916.t1.1		3330606,3330243,3328576,3328148,3327069,3326503,3325562,3321436,3320975,3320458,3319592,3319116,3318332,3317382,3316766,3315294	3330889,3330265,3328954,3328246,3327157,3326622,3326162,3321535,3321032,3320627,3320017,3319249,3318447,3317988,3316908,3316458	
chr8	3331244	3334929	3331720	3334788	-	Cre08.g374000.t1.2	Cre08.g374000.t1.2		3334625,3334249,3333381,3332763,3332462,3331244	3334929,3334346,3333975,3333032,3332527,3332223	
chr8	3335080	3340654	3335117	3339979	+	POLD2	Cre08.g374050.t1.2		3335080,3335247,3335609,3336049,3336407,3336773,3337197,3337800,3338261,3338617,3339075,3339579	3335152,3335331,3335735,3336118,3336498,3336904,3337334,3337966,3338365,3338747,3339218,3340654	Homologous to eukaryotic DNA polymerase delta small subunit; ts-lethal mutations block in S/M (PMID 25336509)
chr8	3340740	3346621	3340839	3343718	+	Cre08.g374100.t1.1	Cre08.g374100.t1.1		3340740,3341104,3341614,3342137,3342616,3343093,3343622	3340960,3341279,3341726,3342185,3342687,3343221,3346621	
chr8	3340740	3346621	3340839	3343718	+	Cre08.g374100.t2.1	Cre08.g374100.t2.1		3340740,3341104,3341614,3342137,3342616,3343093,3343622	3340951,3341279,3341726,3342185,3342687,3343221,3346621	
chr8	3346670	3351421	3346763	3350479	+	Cre08.g374150.t1.1	Cre08.g374150.t1.1		3346670,3347380,3348110,3348489,3348844,3349360	3346993,3347500,3348186,3348701,3348910,3351421	
chr8	3351503	3364559	3353507	3364332	-	Cre08.g374200.t1.1	Cre08.g374200.t1.1		3364287,3363810,3363517,3363224,3362322,3361742,3361212,3360692,3360103,3359676,3359320,3358927,3351503	3364559,3363839,3363579,3363288,3362374,3361761,3361265,3360766,3360421,3359771,3359472,3359043,3358588	
chr8	3367482	3381316	3368162	3380836	-	SAG1	Cre08.g374250.t1.1		3381127,3380730,3379759,3379243,3378098,3377065,3376823,3376150,3375125,3374726,3374414,3373648,3373149,3369989,3369618,3369105,3367482	3381316,3380910,3380455,3379551,3378917,3377115,3376846,3376605,3375752,3374861,3374493,3374150,3373478,3372979,3369776,3369267,3368740	Sexual adhesion protein located on the flagellar surface of plus gametes [PMID: 15659633]; see AY450930; May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	3381458	3386256	3382184	3386116	-	CGL115	Cre08.g374300.t1.1		3385985,3385502,3384096,3383243,3382791,3381458	3386256,3385857,3385096,3383893,3382898,3382253	
chr8	3386759	3388806	3387552	3388776	-	Cre08.g374350.t1.2	Cre08.g374350.t1.2		3388650,3388373,3388000,3386759	3388806,3388445,3388065,3387668	
chr8	3388868	3393116	3389273	3392666	-	Cre08.g374400.t1.1	Cre08.g374400.t1.1		3392584,3392015,3391575,3391111,3390867,3390396,3389894,3388868	3393116,3392349,3391663,3391171,3390920,3390474,3390208,3389659	
chr8	3388868	3392876	3389273	3392666	-	Cre08.g374400.t2.1	Cre08.g374400.t2.1		3392584,3392015,3391575,3391111,3390867,3390396,3389894,3388868	3392876,3392349,3391663,3391171,3390920,3390474,3390208,3389659	
chr8	3393171	3394326	3393207	3394225	-	Cre08.g374436.t1.2	Cre08.g374436.t1.2		3394003,3393171	3394326,3393837	
chr8	3394427	3397258	3394702	3396931	+	Cre08.g374450.t1.1	Cre08.g374450.t1.1		3394427,3395460,3395866	3394783,3395567,3397258	
chr8	3398547	3401158	3398637	3399274	+	FDX12	Cre08.g374550.t1.2		3398547,3398847	3398690,3401158	
chr8	3401739	3406316	3402321	3406063	-	Cre08.g374600.t1.1	Cre08.g374600.t1.1		3405204,3403870,3403097,3401739	3406316,3404358,3403644,3402870	
chr8	3406807	3412416	3407360	3412265	-	DII3	Cre08.g374650.t1.1		3412186,3411672,3411323,3410862,3410561,3410198,3409567,3409174,3408820,3407981,3406807	3412416,3411784,3411526,3410972,3410620,3410314,3409687,3409262,3408915,3408052,3407570	Tetratricopeptide repeat protein associated with inner dynein arm d
chr8	3412527	3432958	3412801	3432623	+	FAP244	Cre08.g374700.t1.1		3412527,3413157,3413712,3414236,3414518,3415048,3415616,3416614,3417325,3417732,3418760,3419107,3419729,3420479,3420846,3421241,3422380,3422820,3423215,3423739,3424116,3424534,3424876,3425436,3425815,3426181,3426574,3427355,3427957,3428386,3428759,3429250,3429854,3430350,3430684,3431353,3431936	3412924,3413333,3413815,3414326,3414645,3415382,3416393,3417067,3417478,3418486,3418858,3419405,3419850,3420609,3420978,3421335,3422538,3422972,3423331,3423786,3424187,3424675,3425048,3425648,3425901,3426318,3426994,3427581,3428230,3428474,3429001,3429363,3429940,3430445,3430812,3431598,3432958	Flagellar Associated Protein, found in the flagellar proteome; May contain additional coding sequence in intronic N-island PMID: 27175017; null-allele mutant was isolated (PMID 29743196)
chr8	3434821	3441156	3435290	3440434	-	Cre08.g374750.t1.1	Cre08.g374750.t1.1		3440955,3439113,3436940,3436376,3434821	3441156,3440582,3438906,3436681,3436142	
chr8	3441297	3446548	3441512	3446097	+	Cre08.g374800.t1.2	Cre08.g374800.t1.2		3441297,3442067,3443168,3443814,3444219,3444768,3445190,3445912	3441679,3442778,3443546,3443916,3444342,3444830,3445325,3446548	
chr8	3448017	3451255	3448329	3450741	+	Cre08.g374850.t1.1	Cre08.g374850.t1.1		3448017,3450510	3450252,3451255	
chr8	3451387	3454758	3451684	3454209	+	Cre08.g374900.t1.2	Cre08.g374900.t1.2		3451387,3453936	3453757,3454758	
chr8	3458887	3462048	3459161	3461500	+	Cre08.g374926.t1.1	Cre08.g374926.t1.1		3458887,3461227	3461048,3462048	
chr8	3477507	3484178	3477863	3483305	+	Cre08.g374950.t1.1	Cre08.g374950.t1.1		3477507,3479238,3479416,3480345,3481249,3481635,3481984,3482392,3482707,3483152	3478877,3479304,3479560,3480870,3481359,3481739,3482039,3482422,3482787,3484178	
chr8	3484227	3496808	3484454	3495519	+	Cre08.g375000.t1.1	Cre08.g375000.t1.1		3484227,3485118,3485451,3485829,3486288,3486769,3487406,3487841,3488214,3488757,3489409,3492813,3493109,3493700,3494308,3494690,3495161	3484677,3485236,3485572,3485892,3486482,3486910,3487530,3487984,3488287,3489055,3492422,3492919,3493232,3494062,3494421,3494820,3496808	similar to PTP genes; protein-tyrosine phosphatase
chr8	3496861	3500320	3497858	3500205	-	FAP86	Cre08.g375050.t1.2		3500194,3500023,3499549,3499134,3498766,3498228,3496861	3500320,3500082,3499805,3499287,3498840,3498445,3497947	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr8	3503433	3509606	3503990	3509445	-	Cre08.g375084.t1.1	Cre08.g375084.t1.1		3509399,3509028,3508039,3507705,3507299,3506126,3505260,3504888,3504658,3503433	3509606,3509213,3508745,3507826,3507376,3506269,3505824,3505016,3504756,3504200	
chr8	3503433	3509606	3503990	3509445	-	Cre08.g375084.t2.1	Cre08.g375084.t2.1		3509399,3509028,3508039,3507705,3506126,3505260,3504888,3504658,3503433	3509606,3509213,3508745,3507826,3506269,3505824,3505016,3504756,3504200	
chr8	3509761	3518246	3510137	3518087	-	Cre08.g375150.t1.1	Cre08.g375150.t1.1		3517887,3517422,3516066,3515561,3515325,3514657,3514375,3514016,3513476,3513124,3511804,3511358,3510888,3509761	3518246,3517515,3516236,3515671,3515381,3514825,3514466,3514118,3513573,3513168,3512886,3511459,3511133,3510536	
chr8	3518347	3527729	3518562	3526964	+	Cre08.g375200.t1.2	Cre08.g375200.t1.2		3518347,3518818,3519454,3519952,3520439,3521048,3521308,3521644,3523108,3523578,3523867,3524316,3524848,3525535,3526243,3526585	3518638,3519137,3519535,3520082,3520477,3521173,3521365,3521714,3523248,3523692,3523969,3524577,3525161,3525645,3526401,3527729	
chr8	3518347	3527564	3518562	3526964	+	Cre08.g375200.t2.1	Cre08.g375200.t2.1		3518347,3518818,3519454,3519952,3520439,3521048,3521308,3521644,3523108,3523578,3523867,3524316,3524848,3525535,3526243,3526585	3518638,3519137,3519535,3520082,3520477,3521173,3521365,3521714,3523248,3523692,3523969,3524577,3525161,3525645,3526401,3527564	
chr8	3527817	3529498	3528877	3529229	-	MRPS19	Cre08.g375250.t1.1		3527817	3529498	
chr8	3529639	3532398	3529774	3532227	+	Cre08.g375301.t1.1	Cre08.g375301.t1.1		3529639,3531353	3531009,3532398	
chr8	3532449	3537050	3532597	3536455	+	Cre08.g375350.t1.2	Cre08.g375350.t1.2		3532449,3532724,3533258,3533894,3534290,3534692,3535990,3536368	3532630,3532927,3533653,3534111,3534370,3534935,3536115,3537050	
chr8	3537053	3543498	3538618	3542996	-	GSM1	Cre08.g375400.t1.1		3543324,3541262,3540721,3540430,3539842,3539457,3539096,3537053	3543498,3543072,3541011,3540522,3540227,3539586,3539191,3538693	Homeobox transcription factor expressed in minus gametes that interacts with the plus-specific protein GSP1 to initiated zygote development.  Lee et al. 28 [PMID: 1851927].  C. incerta accession: DQ9863
chr8	3543608	3547328	3544364	3547269	-	Cre08.g375450.t1.2	Cre08.g375450.t1.2		3547008,3546471,3545876,3545602,3545231,3544748,3543608	3547328,3546866,3546216,3545682,3545399,3544873,3544445	Possible retinol dehydrogenase
chr8	3547383	3555998	3548464	3555764	-	ATF1	Cre08.g375500.t1.2		3555296,3554654,3554202,3553620,3552994,3552395,3551805,3551393,3551051,3550574,3550112,3549611,3549242,3548756,3547383	3555998,3554758,3554299,3553769,3553063,3552466,3551924,3551583,3551159,3550669,3550199,3549753,3549351,3548888,3548611	glucosamine-6-phosphate synthase; hexosephosphate aminotransferase [EC:2.6.1.16]; contains amidotransferase and phosphosugar isomerase domains; pathway: glutamate metabolism - aminosugars metabolism; ts-lethal mutation blocks at S/M (PMID 29743196)
chr8	3556099	3560133	3556423	3559592	+	Cre08.g375550.t1.2	Cre08.g375550.t1.2		3556099,3556392,3556726,3557191,3557660,3558172,3558415,3558727,3559049,3559359	3556265,3556449,3556805,3557234,3557749,3558218,3558484,3558796,3559099,3560133	
chr8	3560143	3562748	3560220	3562703	-	Cre08.g375600.t1.2	Cre08.g375600.t1.2		3562667,3562459,3562103,3561750,3560143	3562748,3562580,3562321,3561957,3561141	
chr8	3562864	3566998	3563433	3566869	-	Cre08.g375650.t1.1	Cre08.g375650.t1.1		3566689,3566259,3565899,3565545,3565104,3564441,3563968,3562864	3566998,3566436,3566083,3565679,3565253,3564548,3564096,3563535	
chr8	3567099	3570140	3567431	3570101	+	Cre08.g375676.t1.1	Cre08.g375676.t1.1		3567099,3567514,3567786,3568127,3568360,3568987,3569933	3567454,3567620,3567949,3568294,3568681,3569645,3570140	
chr8	3570143	3573428	3571254	3573288	-	Cre08.g375700.t1.1	Cre08.g375700.t1.1		3573072,3572181,3570143	3573428,3572762,3571551	
chr8	3575939	3578730	3576060	3577589	+	Cre08.g375751.t1.1	Cre08.g375751.t1.1		3575939,3576394,3576978	3576256,3576750,3578730	
chr8	3580029	3587710	3580499	3587435	+	Cre08.g375800.t1.1	Cre08.g375800.t1.1		3580029,3580752,3581438,3581699,3582109,3582478,3582887,3584038,3584253,3584563,3584892,3585258,3585607,3586103	3580530,3581311,3581540,3581916,3582202,3582629,3583791,3584137,3584384,3584728,3585004,3585361,3586006,3587710	
chr8	3587769	3593331	3587915	3592744	+	Cre08.g375801.t1.1	Cre08.g375801.t1.1		3587769,3588245,3588622,3588882,3589768,3590234,3590567,3591021,3591620,3592162	3588054,3588495,3588691,3589556,3589902,3590291,3590693,3591492,3591987,3593331	
chr8	3594733	3598068	3595464	3597965	-	Cre08.g375850.t1.2	Cre08.g375850.t1.2		3597916,3597811,3597466,3597199,3596753,3596310,3595857,3594733	3598068,3597827,3597711,3597269,3596836,3596410,3596047,3595539	
chr8	3599009	3606087	3599117	3605279	+	EIF2X	Cre08.g375900.t1.1		3599009,3599241,3599362,3599821,3600363,3600713,3601062,3601652,3602100,3602474,3603075,3603502,3603773,3604031,3604451,3604766,3605199	3599136,3599295,3599467,3599940,3600413,3600821,3601256,3601778,3602194,3602611,3603245,3603578,3603870,3604155,3604623,3604880,3606087	contains pfam domain 08662- EIF2A eukaryotic initiation factor family. Putative eukaryotic initiation factor (eIF), possibly eIF2A.
chr8	3606169	3608680	3606361	3608474	+	EXR1	Cre08.g375950.t1.1		3606169,3606776,3607232,3607835,3608061,3608353	3606618,3606857,3607312,3607888,3608152,3608680	UvrB domain-containing protein. Interpro IPR001943. Family includes helicase subunit of DNA excision repair complex.
chr8	3608682	3611585	3609572	3611311	-	Cre08.g376000.t1.1	Cre08.g376000.t1.1		3611212,3610718,3610443,3610108,3608682	3611585,3610821,3610496,3610183,3609632	
chr8	3611699	3613690	3612054	3613520	+	Cre08.g376050.t1.1	Cre08.g376050.t1.1		3611699,3612027,3612269,3612632,3613033,3613442	3611912,3612066,3612339,3612775,3613087,3613690	
chr8	3613693	3617538	3614470	3617424	-	Cre08.g376100.t1.2	Cre08.g376100.t1.2		3617361,3617203,3616955,3616458,3615886,3615584,3614901,3613693	3617538,3617286,3617113,3616595,3616032,3615681,3615021,3614581	
chr8	3617808	3623278	3618307	3623085	-	CGL150	Cre08.g376150.t1.1		3622914,3622488,3621987,3620514,3620052,3619708,3619187,3618766,3617808	3623278,3622508,3622067,3621641,3620186,3619740,3619309,3618970,3618411	
chr8	3617808	3623278	3618307	3623085	-	CGL150	Cre08.g376150.t2.1		3622914,3621987,3620514,3620052,3619708,3619187,3618766,3617808	3623278,3622067,3621641,3620186,3619740,3619309,3618970,3618411	
chr8	3623399	3630557	3623644	3630026	+	Cre08.g376200.t1.2	Cre08.g376200.t1.2		3623399,3623938,3624509,3624793,3625465,3625863,3626355,3626714,3627179,3627857,3628703,3629834	3623815,3624081,3624610,3625134,3625552,3626197,3626525,3626941,3627412,3628466,3629478,3630557	
chr8	3630689	3634330	3630966	3633460	+	Cre08.g376250.t1.1	Cre08.g376250.t1.1		3630689,3633304	3632892,3634330	
chr8	3634433	3636977	3635843	3636885	-	Cre08.g376300.t1.2	Cre08.g376300.t1.2		3636687,3636171,3634433	3636977,3636464,3635957	
chr8	3637201	3638725	3637941	3638620	-	ASF1	Cre08.g376350.t1.2		3637201	3638725	Anti-silencing factor, Silencing Group A, ChromDB SGA3401; homologous to yeast ASF1
chr8	3637201	3639168	3637941	3638620	-	ASF1	Cre08.g376350.t2.1		3638865,3637201	3639168,3638682	Anti-silencing factor, Silencing Group A, ChromDB SGA3401; homologous to yeast ASF1
chr8	3639369	3649368	3640149	3649275	-	Cre08.g376400.t1.1	Cre08.g376400.t1.1		3648987,3648573,3648184,3647416,3642653,3642298,3639369	3649368,3648654,3648356,3647497,3647199,3642474,3642105	
chr8	3649418	3651618	3649887	3651446	-	CPLD36	Cre08.g376450.t1.2		3651380,3650880,3650409,3649418	3651618,3651033,3650498,3650003	Conserved expressed protein; Arabidopsis homologue is predicted to be plastid localized
chr8	3651719	3654410	3651987	3654297	+	Cre08.g376500.t1.2	Cre08.g376500.t1.2		3651719,3652189,3652468,3653243,3653697,3653961,3654244	3651998,3652280,3652937,3653362,3653736,3654110,3654410	Excises oxidized bases
chr8	3654569	3655409	3654669	3654988	+	DLR1	Cre08.g376550.t1.2		3654569	3655409	LC7a component of outer arm dynein; member of LC7/Roadblock family; interacts with both the outer arm and inner arm I1/f.  Matsuo et al.'s (2008) roc63 (rhythm of chloroplast) circadian rhythm mutant locus maps here
chr8	3660606	3667458	3662775	3666951	-	CSR5	Cre08.g376650.t1.2		3666786,3666664,3665843,3665411,3664775,3664198,3663743,3663199,3660606	3667458,3666690,3666030,3665459,3664864,3664372,3663810,3663336,3662976	
chr8	3669059	3681710	3669324	3680935	+	MRCE1	Cre08.g376700.t1.2		3669059,3669431,3671297,3671829,3672277,3672582,3672922,3673350,3673789,3674385,3674813,3675183,3675774,3676263,3677535,3678088,3678887,3679349,3679742,3680133,3680729	3669342,3669622,3671404,3671970,3672427,3672697,3673010,3673462,3673907,3674489,3674895,3675317,3675842,3676326,3677667,3678212,3679041,3679422,3679832,3680364,3681710	Catalyzes the first two steps of 5'-cap addition on mRNAs: removal of the terminal 5'-phosphate and 5'-addition of a guanosine residue with formation of a 5'-ppp-5' linkage. Although the two activities are found on two separate polypeptides in yeast, they are present on one single protein in Chlamydomonas, as in humans
chr8	3682229	3689360	3682580	3689344	+	CEP7	Cre08.g376720.t1.1		3682229,3682983,3683782,3684186,3684545,3685163,3685514,3685764,3686445,3686833,3687927,3688272,3688623,3688941,3689267	3682744,3683311,3683939,3684322,3684690,3685293,3685603,3686184,3686634,3687622,3688098,3688433,3688652,3689075,3689360	Cysteine-type endopeptidase, papain type
chr8	3683659	3689360	3683686	3689344	+	CEP7	Cre08.g376720.t2.1		3683659,3683849,3684186,3684545,3685163,3685514,3685764,3686445,3686833,3687927,3688272,3688623,3688941,3689267	3683703,3683939,3684322,3684690,3685293,3685603,3686184,3686634,3687622,3688098,3688433,3688652,3689075,3689360	Cysteine-type endopeptidase, papain type
chr8	3689459	3699862	3689920	3698836	+	Cre08.g376740.t1.1	Cre08.g376740.t1.1		3689459,3690241,3690542,3691036,3691418,3691680,3691926,3692199,3692635,3693137,3693595,3693940,3694320,3694581,3694919,3696205,3696851,3697525,3698156	3690040,3690356,3690823,3691162,3691529,3691745,3691955,3692353,3692831,3693413,3693734,3694048,3694367,3694698,3695812,3696612,3697191,3697978,3699862	
chr8	3689459	3699862	3689920	3698836	+	Cre08.g376740.t2.1	Cre08.g376740.t2.1		3689459,3690241,3690542,3691036,3691418,3691680,3691926,3692199,3692635,3693137,3693595,3693940,3694320,3694581,3694919,3696205,3696851,3697525,3698159	3690040,3690356,3690823,3691162,3691529,3691745,3691955,3692353,3692831,3693413,3693734,3694048,3694367,3694698,3695812,3696612,3697191,3697978,3699862	
chr8	3700237	3712872	3700856	3712809	-	Cre08.g376800.t1.1	Cre08.g376800.t1.1		3709758,3708545,3708083,3707484,3707105,3706447,3706113,3704878,3704377,3703948,3703443,3702691,3701890,3701320,3700237	3712872,3709513,3708260,3707824,3707234,3706949,3706133,3704943,3704499,3704067,3703630,3703003,3702129,3701563,3701110	
chr8	3713013	3716124	3713199	3715363	+	Cre08.g376850.t1.2	Cre08.g376850.t1.2		3713013,3713521,3714164,3714663,3715264	3713257,3713858,3714297,3714933,3716124	
chr8	3713013	3716254	3713199	3715363	+	Cre08.g376850.t2.1	Cre08.g376850.t2.1		3713013,3713521,3714164,3714663,3715264	3713257,3713858,3714297,3714933,3716254	
chr8	3716127	3717732	3716290	3717566	-	Cre08.g376900.t1.1	Cre08.g376900.t1.1		3717519,3717364,3716646,3716405,3716127	3717732,3717441,3717151,3716526,3716290	
chr8	3716267	3717732	3716290	3717566	-	Cre08.g376900.t2.1	Cre08.g376900.t2.1		3717519,3717364,3716646,3716405,3716267	3717732,3717441,3717151,3716526,3716290	
chr8	3717857	3723352	3719231	3722878	-	MMP14	Cre08.g376950.t1.1		3723040,3722745,3722495,3721612,3721352,3719896,3717857	3723352,3722881,3722620,3722283,3721387,3721113,3719545	partial sequence similar to gametolysin (cell wall lytic enzyme, autolysin, gamete lytic enzyme, GLE); a matrix metalloproteinase
chr8	3723453	3725402	3723602	3724985	+	Cre08.g377000.t1.2	Cre08.g377000.t1.2		3723453,3723833,3724417,3724937	3723618,3723914,3724537,3725402	
chr8	3725407	3728532	3725769	3728501	-	Cre08.g377050.t1.1	Cre08.g377050.t1.1		3728356,3727939,3725407	3728532,3728144,3727545	
chr8	3728587	3732512	3729458	3732455	-	ADK6	Cre08.g377100.t1.2		3732149,3731763,3731319,3730566,3730022,3728587	3732512,3731816,3731402,3730650,3730203,3729611	Putative adenylate kinase; linked to ADK5
chr8	3732613	3740264	3732702	3739424	+	Cre08.g377150.t1.2	Cre08.g377150.t1.2		3732613,3733138,3733535,3734110,3734472,3734872,3735194,3735581,3736154,3736770,3737327,3737831,3738357,3738987,3739355	3732879,3733215,3733618,3734174,3734595,3734896,3735278,3735672,3736218,3736839,3737396,3737973,3738439,3739130,3740264	
chr8	3740573	3761284	3741528	3761038	+	Cre08.g377200.t1.1	Cre08.g377200.t1.1		3740573,3741453,3742947,3743525,3744108,3744527,3745162,3745559,3745887,3746446,3746881,3747485,3747931,3748287,3748748,3749092,3749523,3749789,3750228,3750603,3750958,3751416,3752035,3752441,3752885,3753370,3754224,3755784,3756488,3756778,3757182,3757694,3758301,3758710,3760267,3760600	3740785,3742358,3743126,3743619,3744202,3744745,3745316,3745621,3745962,3746587,3746990,3747643,3747999,3748342,3748787,3749226,3749629,3749955,3750343,3750684,3751118,3751508,3752175,3752585,3753126,3753528,3754334,3756242,3756553,3756956,3757239,3757765,3758408,3759666,3760374,3761284	SWI/SNF chromatin remodeling complex component, ChromDB CHR345; SNF2 domain-containing protein/helicase domain-containing chromatin remodeling protein
chr8	3785674	3788692	3786786	3788305	-	Cre08.g377251.t1.1	Cre08.g377251.t1.1		3788286,3785674	3788692,3787928	
chr8	3790075	3798402	3790810	3798355	-	Cre08.g377300.t1.1	Cre08.g377300.t1.1		3798145,3797453,3797089,3796542,3796088,3795666,3795111,3794339,3793870,3792602,3792222,3792016,3791458,3790075	3798402,3797914,3797204,3796836,3796222,3795771,3795275,3794840,3793951,3793519,3792293,3792101,3791815,3790963	
chr8	3798573	3807314	3799142	3806234	+	FAP180	Cre08.g377350.t1.1		3798573,3798807,3799122,3799328,3799721,3800184,3800491,3801374,3801833,3802252,3803582,3804108,3804581,3804891,3805377,3806150	3798691,3798914,3799182,3799425,3799915,3800256,3800930,3801514,3802024,3803331,3803757,3804249,3804703,3805142,3805613,3807314	Contains adenylate and gualylate kinase domains, and calmodulin binding IQ motifs and a C-terminal Dpy30 motif; linked to ADK6; found in the flagellar proteome and previously annotated as FAP18 and FAP121; null-allele passenger mutation was isolated (PMID 29743196)
chr8	3807317	3812222	3808172	3811749	-	Cre08.g377400.t1.1	Cre08.g377400.t1.1		3807317	3812222	
chr8	3812419	3827682	3813877	3827381	-	Cre08.g377450.t1.1	Cre08.g377450.t1.1		3826853,3826223,3825732,3825054,3824715,3824031,3823688,3823353,3822703,3822152,3821575,3821195,3820789,3819757,3819269,3818607,3818099,3817654,3817097,3816729,3816373,3815843,3815169,3814870,3814647,3812419	3827682,3826366,3825812,3825146,3824768,3824281,3823751,3823472,3822789,3822364,3821722,3821276,3820903,3819864,3819367,3818801,3818306,3817772,3817262,3816820,3816465,3815926,3815234,3815004,3814694,3814186	
chr8	3828027	3837002	3828634	3836255	-	Cre08.g377500.t1.2	Cre08.g377500.t1.2		3836155,3836036,3835564,3834963,3834308,3833903,3833176,3832710,3832230,3831772,3831376,3831041,3830754,3830287,3829010,3828027	3837002,3836083,3835618,3835050,3834513,3834044,3833478,3832781,3832318,3831892,3831417,3831073,3830852,3830364,3829066,3828718	
chr8	3837133	3839757	3837313	3837956	+	Cre08.g377550.t1.2	Cre08.g377550.t1.2		3837133,3837489,3837756,3837941	3837410,3837644,3837826,3839757	
chr8	3839883	3847334	3840281	3846679	+	ATG14	Cre08.g377600.t1.1		3839883,3841025,3841535,3842240,3843029,3843596,3844069,3844534,3845336,3845915,3846349	3840455,3841124,3841665,3842530,3843097,3843688,3844268,3844822,3845621,3846015,3847334	Autophagy-specific subunit of phosphatidylinositol 3-kinase complex I; Atg14 targets complex I to the phagophore assembly site (PAS); required for localizing additional ATG proteins to the PAS
chr8	3847499	3848202	3847723	3847940	-	Cre08.g377650.t1.2	Cre08.g377650.t1.2		3847499	3848202	
chr8	3848381	3853422	3849542	3853053	-	Cre08.g377700.t1.1	Cre08.g377700.t1.1		3853171,3853025,3852373,3851972,3851730,3851345,3850594,3850246,3848381	3853422,3853065,3852618,3852084,3851822,3851418,3850759,3850281,3849758	
chr8	3853533	3861394	3853713	3861209	+	Cre08.g377750.t1.1	Cre08.g377750.t1.1		3853533,3853993,3854455,3855363,3855626,3855910,3856128,3856587,3856985,3857313,3861209	3853851,3854198,3854938,3855401,3855725,3855986,3856220,3856643,3857176,3860999,3861394	
chr8	3853533	3861394	3853713	3860622	+	Cre08.g377750.t2.1	Cre08.g377750.t2.1		3853533,3853993,3854455,3855363,3855626,3855910,3856128,3856587,3856985,3857313	3853851,3854198,3854938,3855401,3855725,3855986,3856220,3856643,3857176,3861394	
chr8	3861443	3866874	3861510	3865943	+	Cre08.g377800.t1.1	Cre08.g377800.t1.1		3861443,3863520,3864072,3864158,3864740,3865371,3865760	3863257,3863692,3864112,3864659,3865130,3865585,3866874	
chr8	3867328	3873312	3867986	3873170	-	Cre08.g377850.t1.2	Cre08.g377850.t1.2		3873135,3872586,3872111,3871493,3871106,3870510,3870153,3869744,3869430,3869113,3868551,3867328	3873312,3872959,3872223,3871822,3871174,3870752,3870253,3869856,3869464,3869200,3868638,3868329	
chr8	3873473	3877320	3873525	3876307	+	Cre08.g377900.t1.2	Cre08.g377900.t1.2		3873473,3874367,3874709,3875141,3875476,3875836	3873918,3874531,3874819,3875221,3875523,3877320	
chr8	3878059	3882462	3879846	3882130	-	Cre08.g377950.t1.2	Cre08.g377950.t1.2		3882074,3881911,3881769,3881431,3881122,3880723,3880289,3878059	3882462,3881986,3881822,3881639,3881249,3880843,3880423,3880099	null-allele mutant was isolated (PMID 29743196)
chr8	3883391	3886768	3884100	3886712	-	Cre08.g378000.t1.2	Cre08.g378000.t1.2		3886597,3886443,3886228,3886014,3885773,3885443,3885016,3884387,3883391	3886768,3886529,3886319,3886071,3885842,3885579,3885296,3884710,3884208	
chr8	3886884	3888820	3887007	3888029	+	NUOP5	Cre08.g378050.t1.2		3886884,3887236,3887628,3887894	3887123,3887322,3887682,3888820	mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 16 kDa subunit precursor; gi.AAS58503 [PMID: 15450959; PMID: 15710684]; unknown evolutionary origin
chr8	3889074	3891105	3889225	3890348	+	Cre08.g378100.t1.1	Cre08.g378100.t1.1		3889074,3889499,3889755,3890258	3889361,3889546,3889957,3891105	
chr8	3891264	3899302	3891412	3898201	+	GLD2	Cre08.g378150.t1.1		3891264,3891697,3891866,3892373,3893246,3893788,3894228,3894547,3895015,3895591,3895934,3896335,3896814,3897299,3897577,3898087	3891596,3891782,3892000,3892467,3893300,3893951,3894381,3894612,3895140,3895653,3896032,3896465,3896931,3897416,3897665,3899302	
chr8	3899648	3906487	3900425	3906211	-	Cre08.g378200.t1.2	Cre08.g378200.t1.2		3906158,3905502,3904977,3904657,3904255,3903837,3903407,3903040,3902660,3902082,3901001,3899648	3906487,3905631,3905099,3904715,3904432,3903998,3903571,3903153,3902756,3902187,3901138,3900624	
chr8	3906664	3913417	3906810	3911757	+	Cre08.g378250.t1.2	Cre08.g378250.t1.2		3906664,3907026,3907565,3908175,3908823,3909724,3910513,3911374,3911673	3906939,3907082,3907649,3908287,3908906,3909843,3910626,3911505,3913417	
chr8	3906664	3913417	3906810	3911757	+	Cre08.g378250.t2.1	Cre08.g378250.t2.1		3906664,3907026,3907565,3908175,3908823,3909724,3910513,3911374,3911676	3906939,3907082,3907649,3908287,3908906,3909843,3910626,3911505,3913417	
chr8	3914754	3920805	3915079	3919419	+	Cre08.g378300.t1.1	Cre08.g378300.t1.1		3914754,3915746,3916077,3916387,3916885,3917483,3917937,3918381,3918886,3919307	3915318,3915819,3916171,3916529,3916981,3917761,3918051,3918479,3918958,3920805	
chr8	3920808	3922613	3920993	3922580	-	Cre08.g378351.t1.1	Cre08.g378351.t1.1		3922570,3922451,3922092,3920808	3922613,3922498,3922220,3921274	
chr8	3924604	3925575	3924716	3925392	+	Cre08.g378400.t1.2	Cre08.g378400.t1.2		3924604	3925575	
chr8	3924649	3926793	3924664	3926720	-	Cre08.g378417.t1.1	Cre08.g378417.t1.1		3926445,3926181,3925717,3924649	3926793,3926334,3925775,3925400	
chr8	3925648	3926793	3925712	3926720	-	Cre08.g378417.t2.1	Cre08.g378417.t2.1		3926445,3926181,3925648	3926793,3926334,3925775	
chr8	3930388	3933493	3931193	3932933	-	Cre08.g378450.t1.1	Cre08.g378450.t1.1		3933220,3931981,3930388	3933493,3932997,3931732	
chr8	3933968	3946633	3935057	3946596	-	Cre08.g378500.t1.1	Cre08.g378500.t1.1		3946307,3945676,3945372,3944582,3943938,3943135,3942646,3942059,3941266,3940614,3940165,3939588,3939146,3938593,3937330,3936825,3936336,3933968	3946633,3945842,3945425,3944734,3944092,3943360,3942740,3942233,3941546,3940782,3940284,3939779,3939229,3938685,3938253,3936965,3936393,3936055	May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	3947434	3949785	3947582	3948029	+	NUOP4	Cre08.g378550.t1.2		3947434,3947776,3947992	3947663,3947894,3949785	mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 9 kDa subunit precursor, mitochondrial [AAS58498.1, [PMID: 15450959; PMID: 15710684]; unknown evolutionary origin
chr8	3949788	3951583	3949806	3951514	-	Cre08.g378601.t1.1	Cre08.g378601.t1.1		3951393,3951258,3950867,3950561,3950210,3949788	3951583,3951304,3950965,3950748,3950259,3949806	
chr8	3951684	3954525	3951788	3953546	+	CGl131	Cre08.g378650.t1.2		3951684,3951967,3952303,3952815,3953403	3951884,3952043,3952407,3952936,3954525	
chr8	3954533	3958913	3954918	3958710	-	Cre08.g378700.t1.2	Cre08.g378700.t1.2		3958660,3957071,3956599,3956041,3955494,3954533	3958913,3958207,3956758,3956160,3955600,3955015	
chr8	3959040	3967041	3959177	3966658	+	Cre08.g378750.t1.1	Cre08.g378750.t1.1		3959040,3959928,3960298,3960634,3961204,3961901,3962718,3963125,3963565,3964121,3964505,3964937,3965193,3965633,3966254	3959356,3960023,3960376,3960750,3961299,3962017,3962837,3963273,3963646,3964306,3964652,3965011,3965290,3965762,3967041	
chr8	3967154	3970674	3967467	3968676	+	Cre08.g378800.t1.2	Cre08.g378800.t1.2		3967154,3967878,3968526	3967772,3968055,3970674	
chr8	3971164	3977103	3972250	3976851	-	RPPK1	Cre08.g378850.t1.2		3976820,3976624,3976094,3975182,3974732,3974294,3973791,3973416,3973073,3972665,3971164	3977103,3976658,3976372,3975277,3974896,3974440,3973903,3973500,3973132,3972766,3972388	ribose-phosphate pyrophosphokinase (RPPK) = phosphoribosylpyrophosphate synthetase (P-Rib-PP synthetase) (PRPP synthetase); normally highly regulated enzyme; PRPP is an essential precursor for purine and pyrimidine nucleotides
chr8	3977890	3981058	3978000	3980415	+	NUO3	Cre08.g378900.t1.2		3977890,3978232,3978347,3978539,3979184,3979784,3980214	3978103,3978266,3978442,3978673,3979295,3979941,3981058	NADH dehydrogenase subunit (Complex I) 3 precursor [=ND3], mitochondrial. gi 33943533 gb AAQ55461.1  [=ND3; NAD3] [PMID: 15710684; PMID: 15450959]
chr8	3981244	3985855	3981640	3985589	+	Cre08.g378950.t1.1	Cre08.g378950.t1.1		3981244,3981817,3982078,3982758,3984698,3984976,3985367	3981716,3981958,3982459,3984478,3984812,3985131,3985855	
chr8	3987118	3989143	3988312	3989105	-	Cre08.g379000.t1.2	Cre08.g379000.t1.2		3988986,3988812,3987118	3989143,3988867,3988431	
chr8	3989244	3993455	3989315	3992451	+	Cre08.g379050.t1.1	Cre08.g379050.t1.1		3989244,3989478,3989896,3990470,3990718,3991800	3989347,3989585,3990271,3990568,3991446,3993455	
chr8	3996238	4007023	3998906	4006525	-	Cre08.g379100.t1.1	Cre08.g379100.t1.1		4006778,4006382,4005903,4004989,4000401,3996238	4007023,4006697,4006221,4005111,4003050,3999763	
chr8	4003203	4007023	4004274	4006525	-	Cre08.g379100.t2.1	Cre08.g379100.t2.1		4006778,4006382,4005903,4004989,4003203	4007023,4006697,4006221,4005111,4004295	
chr8	4008040	4009835	4008588	4009804	-	Cre08.g379150.t1.2	Cre08.g379150.t1.2		4008040	4009835	
chr8	4009946	4010980	4010101	4010379	+	Cre08.g379163.t1.1	Cre08.g379163.t1.1		4009946,4010267	4010199,4010980	
chr8	4015660	4020055	4016955	4019961	-	Cre08.g379175.t1.1	Cre08.g379175.t1.1		4019925,4019610,4018886,4017637,4015660	4020055,4019735,4018981,4017767,4017055	
chr8	4020450	4022285	4021044	4022260	-	Cre08.g379187.t1.1	Cre08.g379187.t1.1		4020450	4022285	
chr8	4028670	4035345	4029970	4035162	-	CPLD18	Cre08.g379200.t1.1		4034955,4034502,4033953,4033489,4032625,4031901,4030652,4028670	4035345,4034633,4034126,4033563,4032750,4031996,4030782,4030070	contains a HExxH motif typical of Zn-binding metalloproteases, embedded in a transmembrane segment as in RseP
chr8	4035446	4047383	4035509	4045800	+	Cre08.g379300.t1.1	Cre08.g379300.t1.1		4035446,4036250,4036957,4038135,4038626,4039674,4040024,4040552,4041231,4041754,4042527,4042956,4044749	4035687,4036451,4037019,4038218,4038721,4039767,4040194,4040720,4041387,4042041,4042603,4044615,4047383	
chr8	4047406	4053565	4048620	4053502	-	TPT1	Cre08.g379350.t1.1		4053285,4052702,4052434,4052099,4051267,4050798,4050188,4049672,4049187,4047406	4053565,4052799,4052556,4052200,4051389,4050896,4050328,4049743,4049316,4048715	
chr8	4053686	4060073	4053818	4058331	+	Cre08.g379400.t1.1	Cre08.g379400.t1.1		4053686	4060073	
chr8	4060466	4071942	4060594	4071266	+	Cre08.g379450.t1.1	Cre08.g379450.t1.1		4060466,4061191,4061653,4062163,4062894,4063801,4064374,4064831,4065220,4065914,4066500,4067187,4068002,4068414,4069138,4069396,4069908,4070267	4060954,4061360,4061812,4062481,4063542,4063908,4064455,4064907,4065315,4066010,4066579,4067310,4068112,4068941,4069254,4069756,4070050,4071942	
chr8	4073406	4085114	4073801	4083824	+	Cre08.g379500.t1.1	Cre08.g379500.t1.1		4073406,4074157,4074862,4075202,4075640,4075994,4076618,4077054,4077592,4078369,4078780,4079234,4079689,4080025,4080505,4080885,4081764,4082297,4082637,4083047	4074047,4074263,4075024,4075309,4075751,4076149,4076874,4077232,4077733,4078513,4078859,4079407,4079751,4080190,4080683,4081424,4081965,4082370,4082759,4085114	
chr8	4086056	4091870	4086261	4090704	+	PHT4	Cre08.g379550.t1.1		4086056,4086429,4086857,4087237,4087725,4088478,4088793,4089225,4089689,4090077,4090593	4086332,4086483,4087054,4087532,4088093,4088589,4088918,4089362,4089779,4090234,4091870	related to putative Arabidopsis sodium, phosphate major facilitator superfamily of transporters
chr8	4086086	4091870	4086862	4090704	+	PHT4	Cre08.g379550.t2.1		4086086,4086429,4086857,4087237,4087725,4088478,4088793,4089225,4089689,4090077,4090593	4086332,4086483,4087054,4087532,4088093,4088589,4088918,4089362,4089779,4090234,4091870	related to putative Arabidopsis sodium, phosphate major facilitator superfamily of transporters
chr8	4091890	4092715	4092236	4092426	-	Cre08.g379576.t1.1	Cre08.g379576.t1.1		4091890	4092715	
chr8	4093260	4104805	4095883	4104025	-	Cre08.g379600.t1.1	Cre08.g379600.t1.1		4103968,4103691,4103036,4102518,4099238,4098179,4096854,4096540,4093260	4104805,4103851,4103279,4102736,4102284,4099075,4096983,4096692,4096171	
chr8	4105757	4109255	4106764	4109194	-	TIC20	Cre08.g379650.t1.2		4109031,4108913,4108637,4107920,4107297,4105757	4109255,4108962,4108847,4108041,4107451,4106843	Similar to Tic20 from Pisum sativum (AAC64607); has three predicted transmembrane domains; sequence alignment implies localisation within the inner membrane of chloroplast and interactions with Tic22 and Tic110; TargetP prediction: chloroplast (0.985; confidence: 1); predicted mature protein starts at residue A75; predicted mature protein region has significant alignment with cyanobacterial proteins: Anabaena variabilis ATCC 29413: ABA21696; Nostoc sp. PCC 7120: BAB76503. [PMID: 15242632; PMID: 11910011; PMID: 9817756; PMID: 16092526]
chr8	4109376	4113837	4109575	4113190	+	PHM1	Cre08.g379700.t1.2		4109376,4110574,4111022,4111467,4111820,4112283,4112626,4113048	4110354,4110760,4111112,4111582,4111926,4112355,4112735,4113837	
chr8	4113840	4115425	4113863	4115019	-	Cre08.g379750.t1.2	Cre08.g379750.t1.2		4114808,4114500,4114218,4113954,4113840	4115425,4114592,4114326,4114008,4113908	
chr8	4116786	4133677	4117218	4132872	+	Cre08.g379800.t1.2	Cre08.g379800.t1.2		4116786,4117573,4117867,4118303,4118721,4119049,4119543,4119793,4120119,4120565,4120738,4121053,4121383,4121719,4122162,4122491,4122964,4123546,4123888,4124347,4124984,4125334,4125879,4126419,4126833,4127251,4127708,4127987,4128339,4128679,4128938,4129494,4129943,4130276,4130620,4130942,4131190,4131477,4131767,4132096,4132533	4117269,4117638,4118008,4118473,4118782,4119248,4119612,4119875,4120388,4120619,4120877,4121191,4121565,4121928,4122254,4122731,4123379,4123779,4124177,4124805,4125101,4125669,4126090,4126563,4126935,4127600,4127821,4128101,4128449,4128781,4129135,4129742,4130084,4130414,4130798,4131043,4131294,4131584,4131850,4132302,4133677	null-allele passenger mutation was isolated (PMID 29743196)
chr8	4133680	4143525	4135156	4143389	-	Cre08.g379850.t1.2	Cre08.g379850.t1.2		4143162,4142548,4141943,4139988,4137558,4136168,4135855,4135536,4133680	4143525,4142650,4142227,4141746,4139882,4137263,4135969,4135694,4135360	
chr8	4143620	4152275	4144367	4151674	-	Cre08.g379900.t1.1	Cre08.g379900.t1.1		4152015,4151027,4150651,4150217,4149699,4149377,4148856,4147762,4147238,4146834,4146486,4146237,4145695,4145299,4144699,4143620	4152275,4151824,4150732,4150338,4149776,4149560,4148904,4148564,4147354,4146887,4146561,4146328,4145873,4145449,4144762,4144438	
chr8	4152376	4157217	4152872	4156710	+	PFH17	Cre08.g379950.t1.1		4152376,4152734,4153497,4153916,4154285,4154502,4154855,4155249,4155541,4155930,4156502	4152484,4153146,4153599,4154001,4154331,4154555,4155010,4155267,4155648,4156029,4157217	Procollagen-proline dioxygenase homolog, requires Fe2+ and ascorbate
chr8	4157610	4164543	4158262	4163789	+	UMM7	Cre08.g380000.t1.2		4157610,4158210,4158921,4159344,4160138,4160742,4161110,4161571,4162231,4162649	4157761,4158709,4159076,4159433,4160251,4160848,4161274,4161968,4162367,4164543	UbiE/COQ5 methyltransferase family
chr8	4169146	4170591	4169796	4170112	+	Cre08.g380100.t1.2	Cre08.g380100.t1.2		4169146	4170591	
chr8	4169486	4170591	4169796	4170112	+	Cre08.g380100.t2.1	Cre08.g380100.t2.1		4169486	4170591	
chr8	4170610	4192245	4171595	4190968	-	Cre08.g380151.t1.1	Cre08.g380151.t1.1		4192029,4190040,4189551,4188802,4188188,4186578,4186111,4185621,4185123,4184841,4184151,4183805,4183265,4182704,4182242,4181879,4181363,4180943,4180118,4179554,4178797,4178106,4177212,4176848,4176448,4175899,4175190,4174217,4173709,4173171,4170610	4192245,4191030,4189665,4188940,4188506,4187833,4186191,4185755,4185254,4184918,4184389,4183931,4183333,4182877,4182321,4181978,4181600,4181040,4180566,4179749,4179205,4178404,4177758,4176954,4176503,4175975,4175542,4174849,4173807,4173441,4172974	
chr8	4192720	4199141	4192867	4198695	+	SHKD1	Cre08.g380201.t1.1		4192720,4193661,4194335,4195050,4195483,4195962,4196507,4196950,4197420,4197892,4198488	4193169,4193773,4194441,4195137,4195649,4196052,4196616,4197027,4197640,4198108,4199141	(EC:4.2.1.1 -- 1.1.1.25); fusion protein similar to that described for tomato [PMID: 11299368]; predicted mitochondrial by Target-P, but plastidic by homology
chr8	4199540	4201612	4199772	4200767	+	CP12	Cre08.g380250.t1.2		4199540,4200293,4200751	4200012,4200432,4201612	small Intrinsically Unstructured Polypeptide, associating with GAPDH and PRK and modifying their enzymatic properties; chloroplast-targeted [PMID: 8980547, PMID: 12492483, PMID: 12846565]
chr8	4201990	4204375	4202055	4203884	+	MSRA3	Cre08.g380300.t1.1		4201990,4202426,4202813,4203354,4203786	4202152,4202602,4202889,4203516,4204375	catalyzes the thioredoxin-dependent reduction of L-methionine (S)-S-oxide in oxidized proteins
chr8	4204430	4207521	4204515	4207488	+	Cre08.g380350.t1.2	Cre08.g380350.t1.2		4204430,4205110,4205419,4206457,4206838,4207283	4204654,4205237,4206249,4206527,4207044,4207521	
chr8	4207524	4210829	4208636	4210800	-	MAD2	Cre08.g380400.t1.2		4210702,4210492,4210285,4209945,4209644,4209298,4208976,4207524	4210829,4210622,4210405,4210005,4209686,4209352,4209042,4208687	Similar to MAD2 mitotic spindle assembly checkpoint protein
chr8	4210930	4216980	4211178	4215249	+	Cre08.g380452.t1.1	Cre08.g380452.t1.1		4210930,4211902,4212218,4212639,4212827,4212970,4213125,4213305,4213540,4213765,4214737,4214949	4211395,4211946,4212544,4212751,4212890,4213046,4213193,4213456,4213614,4213965,4214761,4216980	
chr8	4217051	4220389	4217480	4220120	-	Cre08.g380500.t1.2	Cre08.g380500.t1.2		4219706,4218812,4218449,4218051,4217051	4220389,4219370,4218552,4218105,4217788	
chr8	4220620	4229761	4220864	4228853	+	Cre08.g380550.t1.2	Cre08.g380550.t1.2		4220620,4221528,4222055,4222418,4222909,4223318,4224567,4226328,4226820,4227306,4227734,4228218,4228712	4221143,4221569,4222125,4222492,4223028,4223458,4224588,4226395,4226947,4227452,4227788,4228329,4229761	
chr8	4229870	4238225	4230045	4235941	+	Cre08.g380600.t1.1	Cre08.g380600.t1.1		4229870,4230214,4230432,4230559,4230672,4231104,4231393,4232556,4232851,4233210,4233656,4234094,4234336,4234883,4235639	4230144,4230346,4230476,4230585,4230778,4231150,4231444,4232636,4232915,4233311,4233785,4234186,4234546,4235551,4238225	
chr8	4238330	4243101	4238682	4242951	+	Cre08.g380650.t1.1	Cre08.g380650.t1.1		4238330,4239904,4240455,4240976,4241854,4242486	4239306,4240109,4240586,4241585,4242234,4243101	
chr8	4243150	4247451	4243333	4245811	+	Cre08.g380700.t1.2	Cre08.g380700.t1.2		4243150,4243663,4244029,4245117,4245613	4243453,4243689,4244076,4245179,4247451	
chr8	4247500	4250801	4248871	4249394	+	Cre08.g380763.t1.2	Cre08.g380763.t1.2		4247500,4248047,4248815	4247760,4248551,4250801	
chr8	4247500	4250801	4248871	4249394	+	Cre08.g380763.t2.1	Cre08.g380763.t2.1		4247500,4247812,4248047,4248815	4247760,4247944,4248551,4250801	
chr8	4251040	4254138	4251236	4253307	+	Cre08.g380800.t1.1	Cre08.g380800.t1.1		4251040,4251570,4252120,4252573,4253094	4251359,4251596,4252167,4252635,4254138	
chr8	4251040	4254401	4251236	4253307	+	Cre08.g380800.t2.1	Cre08.g380800.t2.1		4251040,4251570,4252120,4252573,4253094	4251359,4251596,4252167,4252635,4254401	
chr8	4255660	4259088	4255929	4257721	+	Cre08.g380850.t1.2	Cre08.g380850.t1.2		4255660,4256410	4255995,4259088	
chr8	4263020	4266414	4263449	4265539	+	Cre08.g380950.t1.2	Cre08.g380950.t1.2		4263020,4263964	4263515,4266414	
chr8	4269400	4273164	4269445	4271690	+	Cre08.g381000.t1.2	Cre08.g381000.t1.2		4269400,4270544	4270387,4273164	
chr8	4273331	4281819	4274026	4281727	-	CEP8	Cre08.g381050.t1.1		4281615,4280829,4280415,4279656,4279313,4278984,4278306,4278003,4277505,4277075,4276710,4276068,4275555,4275111,4274525,4273331	4281819,4281376,4280570,4280127,4279392,4279079,4278340,4278046,4277644,4277115,4276805,4276241,4275798,4275332,4274722,4274149	Cysteine-type endopeptidase, papain type
chr8	4282603	4285869	4284238	4285533	-	Cre08.g381075.t1.1	Cre08.g381075.t1.1		4285527,4282603	4285869,4285123	
chr8	4287076	4290379	4288632	4290044	-	Cre08.g381100.t1.1	Cre08.g381100.t1.1		4290038,4287076	4290379,4289634	
chr8	4291593	4295289	4293243	4295016	-	Cre08.g381150.t1.2	Cre08.g381150.t1.2		4294950,4291593	4295289,4294551	
chr8	4295737	4299464	4297405	4299193	-	Cre08.g381200.t1.1	Cre08.g381200.t1.1		4299127,4295737	4299464,4298728	
chr8	4299914	4303609	4301546	4303264	-	Cre08.g381250.t1.2	Cre08.g381250.t1.2		4303258,4299914	4303609,4302860	
chr8	4304094	4307819	4305763	4307483	-	Cre08.g381300.t1.2	Cre08.g381300.t1.2		4307477,4304094	4307819,4307077	
chr8	4308423	4312120	4310099	4311797	-	Cre08.g381350.t1.2	Cre08.g381350.t1.2		4311788,4308423	4312120,4311398	
chr8	4312310	4317401	4312469	4316799	+	Cre08.g381400.t1.2	Cre08.g381400.t1.2		4312310	4317401	
chr8	4317407	4326249	4319061	4326101	-	OPR35	Cre08.g381450.t1.2		4326078,4325826,4325467,4324970,4324348,4323796,4323157,4322148,4321731,4320762,4320199,4319844,4319362,4317407	4326249,4325889,4325657,4325134,4324438,4323894,4323391,4322221,4321817,4320928,4320390,4319889,4319439,4319145	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; two alternative transcripts starting with either MEIVASRawrs.. or by MPASLKHWawrs..
chr8	4317407	4326249	4319061	4326151	-	OPR35	Cre08.g381450.t2.1		4326131,4325826,4325467,4324970,4324348,4323796,4323157,4322148,4321731,4320762,4320199,4319844,4319362,4317407	4326249,4325889,4325657,4325134,4324438,4323894,4323391,4322221,4321817,4320928,4320390,4319889,4319439,4319145	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; two alternative transcripts starting with either MEIVASRawrs.. or by MPASLKHWawrs..
chr8	4326380	4330951	4326604	4330106	+	Cre08.g381483.t1.1	Cre08.g381483.t1.1		4326380,4327162,4327682,4328426,4329212,4329849	4326751,4327250,4327880,4328719,4329413,4330951	
chr8	4331000	4335481	4331098	4334705	+	Cre08.g381516.t1.1	Cre08.g381516.t1.1		4331000,4331427,4331916,4332548,4332913,4333379,4333822,4334468	4331193,4331505,4332029,4332649,4333077,4333529,4333964,4335481	
chr8	4335503	4340679	4337479	4340315	-	Cre08.g381550.t1.2	Cre08.g381550.t1.2		4339954,4339754,4339533,4338950,4338579,4338188,4335503	4340679,4339801,4339602,4339069,4338645,4338214,4337608	
chr8	4341194	4345839	4342752	4345183	-	Cre08.g381600.t1.2	Cre08.g381600.t1.2		4345535,4344843,4344542,4344124,4343650,4343199,4341194	4345839,4345255,4344589,4344193,4343772,4343292,4342917	
chr8	4346005	4351849	4346445	4351561	-	Cre08.g381650.t1.1	Cre08.g381650.t1.1		4351232,4350476,4349814,4349427,4349095,4348383,4348079,4347601,4347186,4346005	4351849,4351006,4349880,4349533,4349161,4348445,4348162,4347678,4347296,4346577	
chr8	4352330	4362500	4352571	4361086	+	Cre08.g381702.t1.1	Cre08.g381702.t1.1		4352330,4353536,4353895,4354245,4354737,4355140,4355715,4356061,4356703,4357503,4357990,4359028,4360094,4360549,4360891	4353138,4353681,4353996,4354316,4354815,4355181,4355835,4356119,4356820,4357595,4358087,4359203,4360185,4360628,4362500	
chr8	4366457	4369628	4366842	4368314	+	Cre08.g381750.t1.1	Cre08.g381750.t1.1		4366457,4366994,4367514,4367834,4368119	4366917,4367044,4367579,4368013,4369628	
chr8	4373361	4377016	4374134	4376704	-	Cre08.g381800.t1.1	Cre08.g381800.t1.1		4376799,4376575,4376187,4375463,4374837,4374607,4373361	4377016,4376704,4376270,4375576,4374914,4374672,4374266	
chr8	4377210	4380066	4378725	4379593	-	Cre08.g381850.t1.2	Cre08.g381850.t1.2		4379805,4377210	4380066,4379628	
chr8	4380596	4389096	4381261	4388950	-	Cre08.g381900.t1.2	Cre08.g381900.t1.2		4388439,4387778,4387095,4386259,4385399,4385104,4384726,4384269,4384046,4383575,4383237,4382914,4382166,4380596	4389096,4388204,4387202,4386545,4386084,4385148,4384809,4384311,4384098,4383734,4383313,4382987,4382306,4381796	
chr8	4389197	4404408	4390502	4403133	+	TAR1	Cre08.g381950.t1.2		4389197,4389851,4392365,4393010,4393421,4393902,4394275,4394697,4395379,4395905,4396343,4397078,4397604,4398042,4399256,4399754,4401474	4389441,4391899,4392488,4393090,4393590,4393998,4394390,4394916,4395531,4395999,4396625,4397230,4397698,4398855,4399513,4401178,4404408	Dual-specificity regulated protein kinase; regulator of triacylglycerol accumulation; its mutation abolishes storage lipid accumulation in S and N starvation; shows conserved functional features of the DYRK family (ATP anchor, phosphate anchor, catalytic loop, cation-binding site, activation loop); residues 495 to 830 are 47% identical to yeast Yak1p
chr8	4404598	4410166	4406877	4409657	-	Cre08.g381983.t1.1	Cre08.g381983.t1.1		4409652,4408307,4407671,4407194,4404598	4410166,4409508,4408242,4407556,4407015	
chr8	4404598	4410166	4406877	4409657	-	Cre08.g381983.t2.1	Cre08.g381983.t2.1		4409652,4408307,4407671,4407218,4404598	4410166,4409508,4408242,4407556,4407015	
chr8	4410407	4414462	4410824	4414050	+	Cre08.g382050.t1.1	Cre08.g382050.t1.1		4410407,4410703,4411135,4411853,4412614,4413171,4413468	4410557,4410971,4411722,4412374,4412979,4413242,4414462	
chr8	4415847	4424008	4416142	4423116	+	Cre08.g382100.t1.2	Cre08.g382100.t1.2		4415847,4416351,4418261,4418774,4419074,4419820,4420234,4420570,4420876,4421175,4421406,4421793,4422160,4422425,4422786	4416237,4418103,4418559,4418876,4419643,4419984,4420404,4420656,4420996,4421281,4421542,4421894,4422255,4422608,4424008	
chr8	4424187	4433457	4424299	4433100	+	Cre08.g382150.t1.1	Cre08.g382150.t1.1		4424187,4424733,4425540,4425775,4425969,4426535,4426880,4427210,4427522,4427836,4428104,4428471,4429054,4429583,4430122,4430619,4431285,4431736,4432044,4432341,4432731	4424583,4425360,4425647,4425858,4426334,4426759,4427008,4427329,4427590,4427964,4428231,4428785,4429278,4429913,4430313,4431092,4431485,4431867,4432124,4432466,4433457	
chr8	4433607	4441418	4433724	4439982	+	Cre08.g382200.t1.1	Cre08.g382200.t1.1		4433607,4434096,4435491,4435911,4436647,4437042,4437433,4437774,4438099,4438331,4438692,4439093,4439322,4439652	4433825,4435260,4435756,4436361,4436811,4437224,4437519,4437894,4438205,4438467,4438793,4439188,4439505,4441418	
chr8	4433607	4440827	4433724	4439982	+	Cre08.g382200.t2.1	Cre08.g382200.t2.1		4433607,4434096,4435491,4435911,4436647,4437042,4437433,4437774,4438099,4438331,4438692,4439093,4439322,4439652	4433825,4435260,4435756,4436361,4436811,4437224,4437519,4437894,4438205,4438467,4438793,4439188,4439505,4440827	
chr8	4442237	4451112	4442471	4448826	+	Cre08.g382250.t1.2	Cre08.g382250.t1.2		4442237,4442814,4443909,4444487,4445004,4445643,4446087,4446389,4446681,4446937,4447187,4447472,4447901,4448186,4448496	4442599,4443724,4444300,4444803,4445493,4445807,4446266,4446475,4446801,4447043,4447323,4447573,4447996,4448369,4451112	
chr8	4451197	4453888	4451335	4453248	+	CCB4	Cre08.g382300.t1.2		4451197,4452109,4452691,4453074	4451932,4452201,4452747,4453888	involved in heme c covalent linkage to cyt b6; conserved in plant lineage and diatoms (organisms performing oxygenic photosynthesis). The protein is localized to the chloroplast and homologous to CCB2. PMID: 17535914
chr8	4453891	4458523	4454914	4458283	-	EZY14	Cre08.g382350.t1.2		4458009,4457331,4456772,4456256,4455704,4455359,4453891	4458523,4457587,4456889,4456353,4455852,4455463,4455182	Triose phosphate transporter family protein, possibly also a multidrug resistance efflux transporter; Early zygote expressed protein; activated upon fus mating [PMID: 1848763]
chr8	4459729	4465086	4461156	4464987	-	Cre08.g382400.t1.1	Cre08.g382400.t1.1		4464081,4459729	4465086,4463883	null-allele mutant was isolated (PMID 29743196)
chr8	4465787	4469156	4466082	4467409	+	Cre08.g382450.t1.2	Cre08.g382450.t1.2		4465787,4466799,4467061	4466522,4466895,4469156	
chr8	4469887	4471166	4470557	4470771	-	Cre08.g382476.t1.1	Cre08.g382476.t1.1		4471073,4469887	4471166,4470866	
chr8	4471219	4471826	4471243	4471568	-	RPS25	Cre08.g382500.t1.2		4471219	4471826	Cytosolic 40S small ribosomal subunit protein S25
chr8	4476507	4486209	4476737	4485234	+	Cre08.g382515.t1.1	Cre08.g382515.t1.1		4476507,4477514,4478108,4478945,4479416,4479857,4480753,4481021,4481665,4482097,4482959,4483273,4484082,4484527,4485050	4476902,4477638,4478472,4479042,4479490,4479955,4480830,4481316,4481721,4482241,4483060,4483457,4484175,4484669,4486209	
chr8	4486507	4491018	4486533	4490439	+	Cre08.g382530.t1.1	Cre08.g382530.t1.1		4486507,4487296,4490154	4486956,4487859,4491018	
chr8	4491401	4492776	4492325	4492578	-	Cre08.g382545.t1.1	Cre08.g382545.t1.1		4491401	4492776	
chr8	4492915	4501196	4493492	4501095	-	ELG39	Cre08.g382560.t1.1		4501008,4500747,4500550,4500013,4499198,4498597,4498097,4497388,4497137,4496592,4496106,4495763,4494510,4492915	4501196,4500794,4500662,4500085,4499692,4498759,4498179,4497584,4497191,4496669,4496174,4495864,4494626,4494083	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr8	4501317	4504448	4501387	4503846	+	Cre08.g382575.t1.1	Cre08.g382575.t1.1		4501317,4501842,4502371,4502964,4503369,4503722	4501535,4502078,4502609,4503050,4503421,4504448	
chr8	4504541	4512796	4505392	4512465	-	Cre08.g382590.t1.1	Cre08.g382590.t1.1		4512382,4511861,4511055,4510422,4509906,4509569,4508950,4507313,4506908,4506676,4506278,4505752,4504541	4512796,4511939,4511234,4510598,4509985,4509668,4509048,4507387,4506991,4506795,4506365,4505849,4505521	
chr8	4504541	4512796	4505392	4512465	-	Cre08.g382590.t2.1	Cre08.g382590.t2.1		4512382,4511861,4511055,4510422,4509906,4509569,4508950,4507313,4506908,4506278,4505752,4504541	4512796,4511939,4511234,4510598,4509985,4509668,4509048,4507387,4506991,4506365,4505849,4505521	
chr8	4513207	4514978	4513489	4514957	+	Cre08.g382605.t1.1	Cre08.g382605.t1.1		4513207,4513683,4514424,4514786	4513531,4513982,4514489,4514978	
chr8	4518840	4526686	4518848	4525667	+	Cre08.g382620.t1.1	Cre08.g382620.t1.1		4518840,4519498,4520150,4520583,4521070,4521352,4521681,4522112,4522558,4522958,4523668,4524217,4524557,4525055	4519067,4519635,4520275,4520708,4521195,4521480,4521806,4522237,4522695,4523083,4523723,4524268,4524703,4526686	
chr8	4526735	4535836	4527093	4535475	+	UBQ4	Cre08.g382650.t1.1		4526735,4527947,4528635,4529017,4529842,4530232,4530638,4531041,4531578,4532130,4532791,4533162,4533565,4534183,4535364	4527627,4528042,4528772,4529232,4529907,4530306,4530800,4531117,4531664,4532253,4532843,4533313,4533799,4534332,4535836	Contains two ubiquitin domains in tandem
chr8	4536105	4539148	4536340	4538327	+	Cre08.g382689.t1.2	Cre08.g382689.t1.2		4536105,4537132,4537624,4538162	4536972,4537288,4537920,4539148	null-allele passenger mutation was isolated (PMID 29743196)
chr8	4539195	4542156	4539479	4541044	+	UBQ3	Cre08.g382700.t1.1		4539195,4539668,4540341,4540879	4539522,4540026,4540637,4542156	Post-translationally modifies proteins to tag them for proteasome-mediated degradation, internalization etc..; contains two ubiquitin domains in tandem. Discussed by Wang et al. 28 [PMID: 184935] as ubiquitin, XP_17244
chr8	4542205	4544526	4542697	4544046	+	Cre08.g382716.t1.1	Cre08.g382716.t1.1		4542205,4542533,4542942,4544046	4542388,4542700,4543851,4544526	
chr8	4542205	4544526	4542697	4544046	+	Cre08.g382716.t2.1	Cre08.g382716.t2.1		4542205,4542533,4542942,4543522,4544046	4542388,4542700,4543135,4543851,4544526	
chr8	4544855	4548452	4545001	4547743	+	Cre08.g382750.t1.1	Cre08.g382750.t1.1		4544855,4545182	4545041,4548452	
chr8	4548983	4557157	4550035	4556854	-	Cre08.g382800.t1.2	Cre08.g382800.t1.2		4557002,4556503,4556273,4555732,4555337,4554160,4553897,4553524,4553022,4552483,4551961,4551348,4550928,4550459,4548983	4557157,4556873,4556308,4555893,4555473,4554268,4553993,4553714,4553180,4552638,4552038,4551485,4551071,4550634,4550162	
chr8	4557299	4559254	4558421	4559218	-	Cre08.g382825.t1.1	Cre08.g382825.t1.1		4559067,4557299	4559254,4558939	
chr8	4559355	4561628	4559407	4560233	+	LYR2	Cre08.g382850.t1.2		4559355,4559612,4560173	4559490,4559774,4561628	Similar to yeast ISD11, which forms a complex with the cys desulfurase NFS1; localized to mitochondria
chr8	4561695	4565956	4562144	4565657	+	Cre08.g382900.t1.1	Cre08.g382900.t1.1		4561695,4562434,4563316,4564062,4564703,4565507	4562208,4563032,4563411,4564501,4565141,4565956	
chr8	4566005	4568565	4566081	4567813	+	Cre08.g382950.t1.2	Cre08.g382950.t1.2		4566005,4566616,4567115,4567509,4567780	4566213,4566758,4567197,4567561,4568565	
chr8	4569535	4580571	4571077	4578845	+	Cre08.g383000.t1.1	Cre08.g383000.t1.1		4569535,4570381,4570824,4574568,4574837,4575264	4570086,4570531,4573802,4574617,4575047,4580571	
chr8	4569535	4580571	4571077	4578845	+	Cre08.g383000.t2.1	Cre08.g383000.t2.1		4569535,4570381,4570745,4574568,4574837,4575264	4570086,4570531,4573802,4574617,4575047,4580571	
chr8	4580909	4584444	4581579	4584389	-	Cre08.g383050.t1.1	Cre08.g383050.t1.1		4584217,4583812,4583213,4582898,4582628,4582414,4582043,4580909	4584444,4583940,4583342,4583012,4582714,4582473,4582099,4581648	
chr8	4584545	4587686	4584739	4586962	+	FAP324	Cre08.g383101.t1.1		4584545,4584878,4585504,4586074,4586833	4584783,4585046,4585569,4586154,4587686	May contain additional coding sequence in intronic N-island (Tulin & Cross, G3: GENES, GENOMES, GENETICS?July 1, 2016?vol. 6?no. 7?1899-1910;https://doi.org/10.1534/g3.116.029207)
chr8	4587689	4590154	4588026	4590047	-	Cre08.g383150.t1.2	Cre08.g383150.t1.2		4589883,4588570,4587689	4590154,4588705,4588251	contains similarity to N-acetyl-transferase 5 that catalyzes the first step of melatonin biosynthesis
chr8	4590255	4601638	4590416	4601087	+	Cre08.g383200.t1.2	Cre08.g383200.t1.2		4590255,4590539,4590991,4592054,4592366,4592733,4598246,4598517,4599112,4599541,4600010,4600408,4600979	4590439,4590710,4591850,4592165,4592428,4598020,4598276,4598793,4599197,4599719,4600094,4600833,4601638	
chr8	4601702	4604454	4603205	4604419	-	Cre08.g383250.t1.2	Cre08.g383250.t1.2		4604127,4603647,4601702	4604454,4603771,4603394	
chr8	4604565	4606757	4604609	4606514	+	Cre08.g383300.t1.2	Cre08.g383300.t1.2		4604565,4604856,4605172,4605980,4606386	4604668,4604926,4605396,4606123,4606757	
chr8	4607885	4610616	4608221	4609937	+	Cre08.g383350.t1.1	Cre08.g383350.t1.1		4607885,4608483,4608708,4608958,4609183,4609372,4609628,4609853	4608243,4608566,4608760,4608999,4609250,4609434,4609694,4610616	
chr8	4610619	4620664	4611143	4620306	-	SRR11	Cre08.g383400.t1.1		4620206,4619609,4619124,4618588,4617996,4617392,4616784,4616183,4615478,4614882,4614143,4613363,4612012,4610619	4620664,4620046,4619314,4618819,4618412,4617829,4617185,4616617,4615894,4615322,4614589,4613875,4613189,4611875	
chr8	4620739	4628784	4621764	4628478	-	Cre08.g383450.t1.1	Cre08.g383450.t1.1		4628064,4627529,4627110,4626799,4626363,4625508,4624610,4624118,4623644,4623108,4622594,4620739	4628784,4627753,4627199,4626847,4626575,4625959,4625194,4624243,4623715,4623238,4622694,4622171	
chr8	4630125	4642764	4630402	4640406	+	Cre08.g383500.t1.1	Cre08.g383500.t1.1		4630125,4630745,4631881,4635657,4639332,4640016	4630520,4631535,4635408,4638959,4639739,4642764	
chr8	4644495	4652226	4644720	4651621	+	Cre08.g383550.t1.2	Cre08.g383550.t1.2		4644495,4645433,4645729,4646270,4646653,4647010,4647361,4647691,4648020,4648363,4648773,4649310,4649881,4651496	4644927,4645512,4645789,4646368,4646711,4647138,4647463,4647771,4648064,4648438,4649074,4649458,4649963,4652226	
chr8	4652295	4661742	4652350	4660894	+	SRR21	Cre08.g383600.t1.1		4652295,4652566,4653237,4653916,4654455,4655169,4655737,4656427,4657033,4657680,4658401,4660180	4652432,4652985,4653674,4654317,4654883,4655585,4656171,4656852,4657461,4658135,4660043,4661742	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr8	4661859	4668094	4662205	4667967	-	Cre08.g383650.t1.2	Cre08.g383650.t1.2		4667812,4667517,4666992,4666679,4666329,4665980,4665526,4664906,4664359,4663776,4662985,4661859	4668094,4667599,4667081,4666791,4666409,4666085,4665605,4665185,4664627,4664171,4663515,4662718	
chr8	4668265	4680986	4668387	4680067	+	Cre08.g383702.t1.1	Cre08.g383702.t1.1		4668265,4668996,4669873,4670337,4670748,4671250,4671807,4672476,4672936,4673519,4673802,4674844,4675332,4675710,4676109,4676714,4677124,4677750,4678319,4678879,4679285,4679842	4668666,4669438,4670003,4670404,4670858,4671341,4671942,4672642,4673279,4673574,4674415,4675081,4675467,4675780,4676369,4676815,4677180,4677875,4678384,4678956,4679398,4680986	
chr8	4680993	4684324	4682187	4684202	-	Cre08.g383750.t1.1	Cre08.g383750.t1.1		4684066,4683629,4683142,4682848,4682441,4680993	4684324,4683768,4683361,4683012,4682616,4682241	
chr8	4680993	4684324	4682187	4684202	-	Cre08.g383750.t2.1	Cre08.g383750.t2.1		4684066,4683629,4683142,4682848,4682441,4680993	4684324,4683768,4683298,4683012,4682616,4682241	
chr8	4686100	4692538	4686258	4692431	+	Cre08.g383800.t1.1	Cre08.g383800.t1.1		4686100,4686934,4687186,4687675,4688152,4688462,4689057,4689452,4689974,4690369,4691342,4691713,4692374	4686399,4687038,4687345,4687784,4688220,4688758,4689106,4689582,4690125,4690926,4691457,4691914,4692538	
chr8	4692585	4694762	4693128	4694560	+	Cre08.g383850.t1.1	Cre08.g383850.t1.1		4692585,4693037,4693612,4694122	4692917,4693476,4694049,4694762	
chr8	4692585	4694762	4693128	4694560	+	Cre08.g383850.t2.1	Cre08.g383850.t2.1		4692585,4693037,4694146	4692917,4693476,4694762	
chr8	4698977	4701858	4699107	4701310	+	Cre08.g383900.t1.1	Cre08.g383900.t1.1		4698977	4701858	
chr8	4702487	4705511	4702590	4704934	+	Cre08.g383950.t1.1	Cre08.g383950.t1.1		4702487,4704241,4704535	4704060,4704345,4705511	
chr8	4705721	4715546	4706185	4715272	-	CYP771A1	Cre08.g384000.t1.1		4714996,4714467,4713804,4709067,4708524,4708126,4707637,4707271,4707017,4706650,4705721	4715546,4714535,4713933,4713419,4708669,4708233,4707777,4707332,4707125,4706724,4706326	cytochrome P450, unknown function
chr8	4715727	4718708	4716065	4717976	+	Cre08.g384050.t1.2	Cre08.g384050.t1.2		4715727,4716428,4716824,4717611,4717871	4716095,4716478,4717307,4717618,4718708	
chr8	4719481	4723726	4721326	4723691	-	Cre08.g384100.t1.1	Cre08.g384100.t1.1		4722167,4721878,4719481	4723726,4721982,4721674	
chr8	4725228	4732926	4727489	4732559	-	Cre08.g384150.t1.1	Cre08.g384150.t1.1		4732758,4732469,4729672,4729160,4728856,4728536,4725228	4732926,4732566,4732323,4729267,4728943,4728651,4727639	
chr8	4733066	4743758	4733196	4743189	+	Cre08.g384200.t1.2	Cre08.g384200.t1.2		4733066,4733688,4734087,4734393,4734604,4734896,4735794,4736060,4736466,4737056,4737490,4738553,4738900,4739348,4739694,4740129,4740565,4740986,4741270,4742211,4742773,4743148	4733428,4733749,4734146,4734464,4734658,4735020,4735871,4736110,4736546,4737166,4737621,4738624,4739052,4739458,4739813,4740370,4740754,4741075,4741990,4742326,4742860,4743758	null-allele mutant was isolated (PMID 29743196)
chr8	4743807	4748218	4743979	4746150	+	Cre08.g384250.t1.2	Cre08.g384250.t1.2		4743807,4743898,4744230,4744458,4744787,4745049,4745352,4745820	4743821,4744036,4744270,4744545,4744896,4745092,4745524,4748218	
chr8	4749127	4787370	4777328	4786789	+	Cre08.g384285.t1.1	Cre08.g384285.t1.1		4749127,4749531,4777306,4777941,4779958,4785163	4749352,4749621,4777737,4779673,4780593,4787370	
chr8	4749127	4787370	4777328	4786789	+	Cre08.g384285.t2.1	Cre08.g384285.t2.1		4749127,4749535,4777306,4777941,4779958,4785163	4749352,4749621,4777737,4779673,4780593,4787370	
chr8	4787417	4806098	4787568	4805883	+	Cre08.g384320.t1.1	Cre08.g384320.t1.1		4787417,4787901,4788549,4788823,4789859,4790129,4790767,4791142,4792694,4793039,4793674,4795691,4798341,4799533,4799848,4800818,4802628,4804322,4804592,4805883	4787671,4787991,4788639,4788961,4789945,4790263,4790901,4791232,4792890,4793470,4795406,4798153,4799342,4799712,4800627,4802389,4803631,4804408,4804726,4806098	
chr8	4787417	4806098	4787568	4805883	+	Cre08.g384320.t2.1	Cre08.g384320.t2.1		4787417,4787901,4788549,4788823,4789859,4790129,4790767,4791142,4792728,4793062,4793674,4795691,4798341,4799533,4799848,4800818,4802628,4804322,4804592,4805883	4787671,4787991,4788639,4788961,4789945,4790263,4790901,4791232,4792890,4793470,4795406,4798153,4799342,4799712,4800627,4802389,4803631,4804408,4804726,4806098	
chr8	4810678	4814186	4810855	4813894	-	Cre08.g384355.t1.1	Cre08.g384355.t1.1		4813822,4813015,4812452,4812010,4810678	4814186,4813747,4812585,4812093,4811344	May contain additional coding sequence in intronic N-island PMID: 27175017
chr8	4814317	4831811	4814407	4831377	+	POLQ2	Cre08.g384390.t1.1		4814317,4817439,4817662,4817966,4818561,4819033,4819497,4820248,4820780,4821246,4821656,4822400,4822652,4823301,4823778,4824238,4824591,4824963,4825464,4825762,4826734,4827131,4828654,4829034,4829587,4830123,4830678	4817221,4817530,4817726,4818258,4818691,4819359,4819935,4820392,4820930,4821319,4822035,4822452,4823050,4823397,4823945,4824335,4824777,4825301,4825571,4826520,4826906,4828328,4828916,4829367,4829942,4830456,4831811	Homologous to eukaryotic DNA polymerase theta.  Involved in DNA repair; a class A polymerase; null-allele mutant was isolated (PMID 29743196)
chr8	4831904	4834876	4832407	4834537	-	Cre08.g384500.t1.2	Cre08.g384500.t1.2		4834503,4834129,4833826,4833238,4831904	4834876,4834286,4833912,4833413,4832924	
chr8	4835140	4840906	4836842	4840780	-	Cre08.g384550.t1.1	Cre08.g384550.t1.1		4840454,4839894,4838901,4838489,4838210,4837871,4835140	4840906,4839981,4839794,4838542,4838308,4837936,4837652	
chr8	4841137	4846998	4841982	4844704	+	Cre08.g384600.t1.2	Cre08.g384600.t1.2		4841137,4841950,4842205,4842540,4842869,4843538,4844012,4844580	4841872,4842054,4842267,4842650,4843253,4843658,4844179,4846998	
chr8	4847551	4852526	4848653	4852071	-	Cre08.g384628.t1.1	Cre08.g384628.t1.1		4847551	4852526	
chr8	4853740	4856335	4854570	4856280	-	Cre08.g384650.t1.2	Cre08.g384650.t1.2		4856148,4855584,4855258,4854968,4853740	4856335,4855839,4855397,4855045,4854657	
chr8	4856400	4859825	4856606	4859548	-	DMA3	Cre08.g384700.t1.1		4859515,4859250,4858974,4858523,4858240,4858010,4857726,4857212,4856400	4859825,4859393,4859051,4858576,4858296,4858054,4857832,4857286,4856988	Putative DNA methylase, N-6 adenine-specific; possibly a ribosomal L11 methyltransferase
chr8	4859949	4865606	4860475	4864694	+	AMA3	Cre08.g384750.t1.1		4859949,4860437,4861123,4861553,4861797,4862189,4862621,4862914,4863171,4863606,4864188,4864576	4860059,4860767,4861384,4861613,4861875,4862318,4862700,4863001,4863255,4863750,4864353,4865606	Belongs to glycoside hydrolase family 13; catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose
chr8	4866566	4871357	4866717	4869530	+	Cre08.g384800.t1.2	Cre08.g384800.t1.2		4866566,4867194,4867349,4868216,4868742,4869014,4869304	4867005,4867220,4867865,4868396,4868814,4869105,4871357	
chr8	4871467	4874585	4871856	4874552	-	Cre08.g384850.t1.1	Cre08.g384850.t1.1		4874231,4873825,4873187,4872873,4872472,4872084,4871467	4874585,4873944,4873240,4872984,4872575,4872209,4871928	contains SH3 domain
chr8	4874967	4886135	4875335	4886085	-	Cre08.g384864.t1.2	Cre08.g384864.t1.2		4885980,4885855,4885514,4885037,4884504,4884125,4883717,4883403,4882966,4882121,4881773,4881381,4880311,4879872,4879165,4878611,4878126,4877615,4877068,4876608,4876040,4874967	4886135,4885888,4885744,4885195,4884651,4884228,4883860,4883561,4883131,4882568,4881868,4881567,4880416,4880004,4879558,4878847,4878314,4877858,4877254,4876863,4876348,4875901	
chr8	4886273	4890097	4886374	4889329	+	FAP356	Cre08.g384900.t1.2		4886273,4886529,4886959,4887455,4887843,4888340,4888883,4889224	4886407,4886608,4887117,4887587,4887898,4888538,4889020,4890097	Similar to MAP3K delta-1 Protein Kinase
chr8	4890100	4893205	4891307	4892638	-	Cre08.g384950.t1.2	Cre08.g384950.t1.2		4892985,4892832,4892261,4890100	4893205,4892906,4892714,4891974	
chr8	4894716	4905271	4895157	4902411	+	Cre08.g385000.t1.2	Cre08.g385000.t1.2		4894716,4895382,4898906,4899253,4899698,4900177,4900641,4901324,4901880	4895260,4898642,4899045,4899523,4899831,4900398,4901121,4901688,4905271	
chr8	4906426	4913322	4906854	4911775	+	Cre08.g385050.t1.1	Cre08.g385050.t1.1		4906426,4907401,4907614,4907856,4908482,4909049,4909314,4909789,4910112,4910473,4910793,4911119	4907217,4907522,4907756,4907953,4908569,4909120,4909505,4909862,4910292,4910606,4910892,4913322	Mitogen-Activated Protein Kinase 2; downstream kinase in the canonical MAP kinase pathway
chr8	4913879	4916815	4914409	4916498	-	EFH5	Cre08.g385100.t1.2		4916399,4916088,4915056,4914684,4913879	4916815,4916137,4915134,4914749,4914457	
chr8	4916916	4926057	4917170	4924898	+	Cre08.g385150.t1.1	Cre08.g385150.t1.1		4916916,4917388,4917781,4920072,4923074,4923477,4924268,4924688	4917215,4917544,4919894,4922858,4923229,4924087,4924532,4926057	
chr8	4926428	4927448	4927082	4927347	-	SMP3	Cre08.g385200.t1.1		4926428	4927448	putative small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E)
chr8	4927591	4933664	4927824	4933151	+	Cre08.g385250.t1.1	Cre08.g385250.t1.1		4927591,4927963,4928212,4928528,4929679,4930061,4930349,4930729,4931168,4931471,4931801,4932091,4932549,4932950	4927889,4928066,4928312,4929505,4929823,4930211,4930500,4930907,4931290,4931628,4931902,4932313,4932689,4933664	
chr8	4933729	4936595	4933958	4936361	-	HLM14	Cre08.g385300.t1.2		4936221,4936052,4935872,4935453,4934836,4933729	4936595,4936127,4935942,4935687,4935024,4934654	Contains SET domain.  ChromoDB SDG3410
chr8	4936652	4941095	4937487	4941000	-	Cre08.g385350.t1.1	Cre08.g385350.t1.1		4940812,4940180,4940049,4939860,4936652	4941095,4940222,4940093,4939910,4939713	
chr8	4941390	4944795	4941976	4944436	-	Cre08.g385400.t1.2	Cre08.g385400.t1.2		4943818,4943541,4942874,4941390	4944795,4943636,4943260,4942603	
chr8	4941390	4944795	4941976	4944436	-	Cre08.g385400.t2.1	Cre08.g385400.t2.1		4943818,4943541,4943117,4941390	4944795,4943636,4943260,4942603	
chr8	4944896	4947917	4945052	4947401	+	Cre08.g385450.t1.2	Cre08.g385450.t1.2		4944896,4945560,4946067,4946442,4946660,4947041	4945330,4945827,4946237,4946464,4946747,4947917	
chr8	4947926	4953985	4949180	4953414	-	AMYA1	Cre08.g385500.t1.2		4953404,4953052,4952479,4952149,4951793,4951389,4951075,4950722,4950237,4949957,4949555,4947926	4953985,4953122,4952535,4952276,4951853,4951467,4951204,4950868,4950342,4950101,4949720,4949298	Belongs to glycoside hydrolase family 13; catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose
chr8	4947926	4954205	4949180	4953414	-	AMYA1	Cre08.g385500.t2.1		4953404,4953052,4952479,4952149,4951793,4951389,4951075,4950722,4950237,4949957,4949555,4947926	4954205,4953122,4952535,4952276,4951853,4951467,4951204,4950868,4950342,4950101,4949720,4949298	Belongs to glycoside hydrolase family 13; catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose
chr8	4954270	4958075	4954859	4957742	-	Cre08.g385550.t1.1	Cre08.g385550.t1.1		4957026,4956625,4954270	4958075,4956709,4956422	
chr8	4958266	4961453	4958603	4961286	+	Cre08.g385600.t1.1	Cre08.g385600.t1.1		4958266,4958888,4959522,4959758,4960066,4960374,4961039	4958648,4958956,4959626,4959907,4960127,4960586,4961453	
chr8	4958266	4961453	4958603	4961286	+	Cre08.g385600.t2.1	Cre08.g385600.t2.1		4958266,4958888,4959522,4959758,4960066,4961039	4958648,4958956,4959626,4959907,4960127,4961453	
chr8	4961786	4966307	4961842	4965532	+	Cre08.g385650.t1.2	Cre08.g385650.t1.2		4961786,4962132,4962471,4962813,4963345,4963672,4963973,4964367,4964782,4965025,4965453	4961923,4962221,4962565,4962966,4963410,4963749,4964074,4964501,4964910,4965095,4966307	
chr8	4967191	4969795	4969330	4969550	-	Cre08.g385675.t1.1	Cre08.g385675.t1.1		4967191	4969795	
chr8	4971566	4977357	4972659	4976979	+	SNAPG1	Cre08.g385700.t1.2		4971566,4972174,4972920,4973381,4974027,4974467,4974815,4975843,4976820	4972102,4972830,4973018,4973483,4974144,4974603,4974947,4975912,4977357	Gamma-SNAP, adaptor protein connecting NSF to cis-SNARE complex; hypothetical conserved protein.
chr8	4977360	4978505	4977476	4978460	-	CHK1	Cre08.g385750.t1.2		4978274,4977634,4977360	4978505,4978184,4977476	glucokinase (carbohydrate kinase) (partial sequence)
chr8	4978559	4984395	4978885	4984166	-	Cre08.g385800.t1.1	Cre08.g385800.t1.1		4984105,4983577,4980952,4980521,4979589,4979325,4978559	4984395,4983776,4983282,4980613,4980317,4979420,4979062	
chr8	4984563	4988695	4984965	4988573	-	CDKC1	Cre08.g385850.t1.2		4988239,4988053,4987752,4986999,4986456,4986078,4985619,4984563	4988695,4988162,4987951,4987105,4986552,4986246,4985866,4985350	Plant specific CDKC ortholog; PITAIRE motif
chr8	4988816	4990137	4988894	4989486	+	Cre08.g385900.t1.2	Cre08.g385900.t1.2		4988816,4989383	4989118,4990137	
chr8	4990186	4992747	4990226	4992720	+	Cre08.g385950.t1.1	Cre08.g385950.t1.1		4990186,4991065,4991362,4992244,4992603	4990229,4991157,4992075,4992339,4992747	
chr8	4992806	4998780	4993109	4998119	+	Cre08.g385951.t1.2	Cre08.g385951.t1.2		4992806,4993290,4993529,4993741,4994273,4995809,4996341,4996596,4997905	4993189,4993375,4993600,4993949,4995630,4996172,4996445,4997734,4998780	
chr8	5000002	5014607	5000002	5014394	+	Cre08.g386000.t1.1	Cre08.g386000.t1.1		5000002,5000318,5000666,5001372,5001850,5002238,5002703,5003076,5003778,5004120,5004422,5004877,5005195,5005517,5005833,5006179,5006820,5007161,5007954,5008287,5008677,5008856,5009073,5009342,5009691,5010076,5010840,5011869,5012498,5013819,5014225	5000154,5000422,5001136,5001479,5002014,5002577,5002911,5003662,5003926,5004297,5004607,5005025,5005372,5005699,5005981,5006602,5006968,5007821,5008121,5008432,5008742,5008912,5009150,5009508,5009894,5010646,5011711,5012321,5013611,5014062,5014607	
chr8	5000002	5014607	5000002	5014394	+	Cre08.g386000.t2.1	Cre08.g386000.t2.1		5000002,5000318,5000666,5001372,5001850,5002238,5002703,5003076,5003778,5004120,5004422,5004877,5005195,5005517,5005833,5006179,5006820,5007161,5007954,5008287,5008677,5008856,5009076,5009342,5009691,5010076,5010840,5011869,5012498,5013819,5014225	5000154,5000422,5001136,5001479,5002014,5002577,5002911,5003662,5003926,5004297,5004607,5005025,5005372,5005699,5005981,5006602,5006968,5007821,5008121,5008432,5008742,5008912,5009150,5009508,5009894,5010646,5011711,5012321,5013611,5014062,5014607	
chr8	5014656	5017507	5014764	5016619	+	Cre08.g386050.t1.2	Cre08.g386050.t1.2		5014656,5014867,5015195,5015575,5015828,5016265	5014786,5015053,5015354,5015628,5015956,5017507	
chr8	5018031	5023635	5018548	5023382	-	CYP744A5P	Cre08.g386100.t1.1		5023366,5021991,5021693,5021144,5020908,5020592,5020331,5020017,5019478,5019158,5018929,5018694,5018031	5023635,5023225,5021935,5021299,5020978,5020769,5020396,5020084,5019584,5019217,5018960,5018780,5018548	null-allele mutant was isolated (PMID 29743196)
chr8	5018031	5023635	5018548	5023382	-	CYP744A5P	Cre08.g386100.t2.1		5023366,5022587,5022401,5021991,5021693,5021144,5020908,5020592,5020331,5020017,5019478,5019158,5018929,5018694,5018031	5023635,5023225,5022493,5022307,5021935,5021299,5020978,5020769,5020396,5020084,5019584,5019217,5018960,5018780,5018548	null-allele mutant was isolated (PMID 29743196)
chr8	5018031	5023635	5018548	5023382	-	CYP744A5P	Cre08.g386100.t3.1		5023366,5022587,5022401,5021991,5021693,5021144,5020908,5020631,5020331,5020017,5019478,5019158,5018929,5018694,5018031	5023635,5023225,5022493,5022307,5021935,5021299,5020978,5020769,5020396,5020084,5019584,5019217,5018960,5018780,5018548	null-allele mutant was isolated (PMID 29743196)
chr9	7372	8275	7766	7992	-	Cre09.g386107.t2.1	Cre09.g386107.t2.1		7372	8275	
chr9	4734	8275	5558	7992	-	Cre09.g386107.t1.1	Cre09.g386107.t1.1		7053,4734	8275,5558	
chr9	10448	21685	11167	21429	-	Cre09.g386113.t1.1	Cre09.g386113.t1.1		21325,21117,20922,20667,20388,20033,19869,19404,19178,18962,18264,17987,17687,17152,16629,16328,16015,15662,15320,15035,14750,14204,13698,13453,13111,12907,12556,12041,11663,10448	21685,21195,21020,20744,20483,20095,19920,19552,19235,19047,18333,18087,17751,17308,17020,16499,16058,15719,15439,15114,14875,14294,13958,13497,13230,12976,12735,12102,11764,11536	
chr9	21760	27385	22320	26755	-	Cre09.g386119.t1.1	Cre09.g386119.t1.1		26704,26548,26082,25815,25525,25362,25139,24788,24396,21760	27385,26581,26113,25940,25593,25411,25200,24963,24595,22320	
chr9	23680	27385	24430	26755	-	Cre09.g386119.t2.1	Cre09.g386119.t2.1		26704,26548,26082,25815,25525,25362,25139,24788,23680	27385,26581,26113,25940,25593,25411,25200,24963,24595	
chr9	21760	23005	22095	22618	-	Cre09.g386125.t1.1	Cre09.g386125.t1.1		22585,21760	23005,22320	
chr9	27796	30617	28030	29879	+	Cre09.g386131.t1.1	Cre09.g386131.t1.1		27796,28290,28459,28796,29567	28194,28367,28623,29273,30617	
chr9	30838	36145	31334	36017	-	Cre09.g386137.t1.1	Cre09.g386137.t1.1		35656,35222,34796,34059,33077,32226,31994,31681,30838	36145,35471,35007,34126,33205,32416,32125,31831,31463	
chr9	38686	41839	38962	41094	+	Cre09.g386143.t1.1	Cre09.g386143.t1.1		38686,40081,40325,40884	39889,40233,40717,41839	
chr9	43886	47477	44807	45629	+	Cre09.g386149.t1.1	Cre09.g386149.t1.1		43886,44661,45098,45506	44299,44867,45172,47477	
chr9	43886	47477	44807	45629	+	Cre09.g386149.t2.1	Cre09.g386149.t2.1		43886,44721,45098,45506	44299,44867,45172,47477	
chr9	45616	47477	46039	46283	+	Cre09.g386155.t1.1	Cre09.g386155.t1.1		45616,45969	45630,47477	
chr9	53436	57227	53479	56793	+	Cre09.g386161.t1.1	Cre09.g386161.t1.1		53436,53763,54063,54257,55936,56230,56499,56679	53682,53921,54087,54304,55976,56362,56558,57227	
chr9	58587	61175	59087	60712	-	Cre09.g386167.t1.1	Cre09.g386167.t1.1		60609,60421,59681,58587	61175,60509,59820,59424	
chr9	65846	66887	66219	66424	+	Cre09.g386173.t1.1	Cre09.g386173.t1.1		65846	66887	
chr9	66966	72537	67127	71955	+	OPR36	Cre09.g386200.t1.1		66966,67238,67402,67580,67799,68149,68609,68915,69376,69809,70863,71517,71838	67144,67283,67494,67662,67999,68444,68763,69109,69479,69935,71356,71658,72537	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr9	73286	76229	73735	75976	+	Cre09.g386250.t1.2	Cre09.g386250.t1.2		73286,73926,74219,75053,75456,75780	73738,74070,74307,75192,75587,76229	
chr9	76260	78255	77004	78025	-	CSB34	Cre09.g386300.t1.2		77485,77243,76260	78255,77353,77127	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr9	78660	81105	79424	81060	-	Cre09.g386350.t1.1	Cre09.g386350.t1.1		80134,79890,79673,78660	81105,79926,79699,79481	
chr9	81152	88529	81555	88428	-	FAP124	Cre09.g386400.t1.2		88208,87941,87443,87060,86582,86256,85675,85470,85027,84745,84417,84013,83559,83110,82837,82499,81888,81152	88529,88041,87808,87143,86695,86354,86015,85539,85208,84865,84545,84136,83908,83290,82934,82661,82225,81660	Flagellar Associated Protein, found in the flagellar proteome as FAP124; related to Ubiquitin-activating enzyme E1
chr9	92360	93915	92714	93490	-	Cre09.g386450.t1.2	Cre09.g386450.t1.2		93079,92360	93915,92903	
chr9	94026	95617	94249	94982	+	Cre09.g386476.t1.1	Cre09.g386476.t1.1		94026,94548	94256,95617	
chr9	96596	100047	96939	99510	+	Cre09.g386500.t1.2	Cre09.g386500.t1.2		96596,97417,98432,98991	96942,98352,98809,100047	
chr9	101961	105995	102768	105649	-	Cre09.g386550.t1.2	Cre09.g386550.t1.2		105589,105420,104869,104508,104308,103991,103767,103413,103179,101961	105995,105462,105089,104744,104394,104187,103869,103611,103301,102986	
chr9	109660	115105	111122	115009	-	Cre09.g386600.t1.1	Cre09.g386600.t1.1		114822,114480,114094,113586,113367,113065,112706,112212,111965,109660	115105,114722,114215,113668,113451,113138,112877,112460,112066,111725	
chr9	109660	115105	111122	114661	-	Cre09.g386600.t2.1	Cre09.g386600.t2.1		114822,114480,114094,113586,113367,113065,112706,112212,111965,109660	115105,114719,114215,113668,113451,113138,112877,112460,112066,111725	
chr9	119290	121703	120103	121579	-	ANT1	Cre09.g386650.t1.2		121549,121229,121030,120487,119290	121703,121456,121111,120828,120348	Adenine Nucleotide Translocator 1, mitochondrial; ADP,ATP carrier protein (ADP/ATP translocase) (Adenine nucleotide translocator) [gi:113465, PMID: 8455552]
chr9	119290	121975	120103	121579	-	ANT1	Cre09.g386650.t2.1		121549,121229,121030,120487,119290	121975,121456,121111,120828,120348	Adenine Nucleotide Translocator 1, mitochondrial; ADP,ATP carrier protein (ADP/ATP translocase) (Adenine nucleotide translocator) [gi:113465, PMID: 8455552]
chr9	122080	126093	122717	125959	-	KIN13-1	Cre09.g386700.t1.2		125683,125447,125201,124711,123804,123435,122958,122080	126093,125593,125281,125001,124386,123637,123242,122795	kinesin-13 family.  Identified by Piao et al. (29) [PMID: 19264963] as being in the kinesin-13 family; Similar to mammalan Kinesin Kif2 (peptide is unique to this kinesin)
chr9	127020	129295	127617	128976	-	Cre09.g386730.t1.1	Cre09.g386730.t1.1		128973,127020	129295,128106	
chr9	131006	138736	131243	138507	+	Cre09.g386731.t1.1	Cre09.g386731.t1.1		131006,131361,131963,132494,133020,133491,134103,134382,134918,135131,136144,136465,137202,137547,137874	131301,131724,132083,132604,133123,133580,134242,134605,134991,135254,136215,136755,137282,137735,138736	May contain additional coding sequence in intronic N-island PMID: 27175017
chr9	138856	145049	139102	144316	+	Cre09.g386732.t1.1	Cre09.g386732.t1.1		138856,139248,139620,139979,140255,142426	139173,139523,139873,140135,142184,145049	
chr9	147346	151963	148145	151198	+	Cre09.g386733.t1.1	Cre09.g386733.t1.1		147346,148253,148975,149546,150034,150450,150993,151172	148185,148786,149268,149880,150281,150670,151049,151963	
chr9	152566	157068	153413	156700	+	Cre09.g386734.t1.1	Cre09.g386734.t1.1		152566,152815,153011,153361,153689,153971,154230,154501,154668,155649,156191,156570	152754,152907,153240,153597,153864,154096,154312,154585,154839,155799,156355,157068	
chr9	157089	161355	157328	161262	-	DLA1	Cre09.g386735.t1.1		161173,161043,160911,160460,160046,159812,159555,159268,159070,158682,158340,158029,157705,157089	161355,161104,160963,160801,160111,159896,159637,159397,159167,158930,158490,158192,157815,157517	Dihydrolipoamide acetyltransferase, probably mitochondrial; EC 2.3.1.12); E2 component of pyruvate dehydrogenase complex; null-allele mutant was isolated (PMID 29743196)
chr9	161486	170097	162285	169911	+	FAP44	Cre09.g386736.t1.1		161486,164123,164460,164896,167275,168510,169003,169593	163960,164310,164775,167099,168370,168811,169329,170097	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; part of tether complex that constrains inner arm I1/f
chr9	170100	172402	171286	172334	-	Cre09.g386737.t1.1	Cre09.g386737.t1.1		170100	172402	
chr9	172460	173305	172716	173215	-	Cre09.g386738.t1.1	Cre09.g386738.t1.1		173156,173012,172460	173305,173087,172860	
chr9	173360	174005	173647	173903	-	Cre09.g386739.t1.1	Cre09.g386739.t1.1		173360	174005	
chr9	178020	180525	179683	180141	-	Cre09.g386740.t1.1	Cre09.g386740.t1.1		180090,179883,178020	180525,179969,179752	
chr9	183728	186899	186490	186683	-	Cre09.g386741.t1.1	Cre09.g386741.t1.1		183728	186899	
chr9	191266	193530	191931	192151	+	Cre09.g386742.t1.1	Cre09.g386742.t1.1		191266,191582,191799	191461,191668,193530	
chr9	197343	199865	197785	198790	+	Cre09.g386743.t1.1	Cre09.g386743.t1.1		197343,197984,198209,198496	197872,198055,198316,199865	
chr9	201293	203919	201527	203287	+	Cre09.g386744.t1.1	Cre09.g386744.t1.1		201293,202270,202626,202924	201620,202530,202775,203919	null-allele passenger mutation was isolated (PMID 29743196)
chr9	204108	205502	205024	205394	-	Cre09.g386745.t1.1	Cre09.g386745.t1.1		205174,204108	205502,205074	
chr9	206103	212494	206438	211695	+	Cre09.g386746.t1.1	Cre09.g386746.t1.1		206103,206636,207494,207960,208195,208588,209330,210851,211139,211390,211661	206558,206794,207553,208048,208418,208792,209497,210977,211258,211511,212494	
chr9	212497	213662	212725	213350	-	Cre09.g386747.t1.1	Cre09.g386747.t1.1		212497	213662	
chr9	213787	216232	215663	216024	-	Cre09.g386748.t1.1	Cre09.g386748.t1.1		213787	216232	
chr9	216443	217894	216783	217682	+	Cre09.g386749.t1.1	Cre09.g386749.t1.1		216443,217559	217089,217894	
chr9	264243	268808	264468	268192	+	HSP90A	Cre09.g386750.t1.2		264243,265234,265605,265955,266307,266701,267349,267925	265014,265387,265713,266053,266547,267082,267668,268808	HSP90A is one of 3 HSP90 genes in Chlamydomonas; HSP90A is localized to the cytosol; PMID: 16143837 and 15995001
chr9	218025	219522	219038	219408	-	Cre09.g386751.t1.1	Cre09.g386751.t1.1		219188,218025	219522,219058	
chr9	220103	221604	220246	220992	+	Cre09.g386752.t1.1	Cre09.g386752.t1.1		220103,220607,220870	220277,220717,221604	
chr9	222818	223812	223085	223597	-	Cre09.g386753.t1.1	Cre09.g386753.t1.1		223362,222818	223812,223085	
chr9	224633	226294	224808	225694	+	Cre09.g386754.t1.1	Cre09.g386754.t1.1		224633,225061,225327	224969,225204,226294	
chr9	226347	227582	227363	227529	-	Cre09.g386755.t1.1	Cre09.g386755.t1.1		226347	227582	
chr9	229623	231892	230075	231416	-	Cre09.g386756.t1.1	Cre09.g386756.t1.1		231560,231286,230888,230597,230258,229623	231892,231444,231102,230727,230420,230129	
chr9	234073	236365	234140	235874	+	Cre09.g386757.t1.1	Cre09.g386757.t1.1		234073,235839	234465,236365	
chr9	236787	243322	237283	243252	-	ALS1	Cre09.g386758.t1.1		243162,243033,242883,242723,242124,241476,240809,240357,239699,238965,238169,237883,236787	243322,243079,242952,242768,242308,241625,240921,240481,239907,239115,238638,237984,237577	Acetolactate synthase, large subunit (EC 2.2.1.6); (acetohydroxy acid synthase, large subunit); precursor, expected plastidic by homology, and predicted plastidic by Target-P.  Previously annotated as ALSL1.  Can be mutated to herbicide resistance.  Requi
chr9	244742	248312	245333	247798	-	Cre09.g386759.t1.1	Cre09.g386759.t1.1		246934,246430,245937,244742	248312,246633,246163,245745	
chr9	3098290	3101585	3098850	3101408	-	Cre09.g386800.t1.2	Cre09.g386800.t1.2		3101577,3100256,3099594,3098290	3101585,3101416,3099992,3099294	
chr9	3116006	3122090	3116068	3120081	+	Cre09.g386838.t1.1	Cre09.g386838.t1.1		3116006,3117309,3118112,3118452,3118704,3118905,3119276,3119490	3117209,3118021,3118389,3118629,3118823,3119144,3119398,3122090	
chr9	3116006	3122090	3116068	3120081	+	Cre09.g386838.t2.1	Cre09.g386838.t2.1		3116006,3117309,3118112,3118452,3118704,3118905,3119333,3119490	3117209,3118021,3118389,3118629,3118823,3119144,3119398,3122090	
chr9	3093726	3098240	3093809	3097758	+	Cre09.g386850.t1.1	Cre09.g386850.t1.1		3093726,3094403,3094658,3095055,3095295,3095641,3096073,3096399,3096844,3097350,3097671	3093980,3094498,3094863,3095141,3095371,3095801,3096095,3096641,3096882,3097461,3098240	
chr9	3093726	3098240	3093809	3097758	+	Cre09.g386850.t2.1	Cre09.g386850.t2.1		3093726,3094403,3094658,3095055,3095295,3095641,3096073,3096399,3096844,3097350,3097671	3093980,3094498,3094863,3095141,3095371,3095801,3096095,3096626,3096882,3097461,3098240	
chr9	3122625	3127275	3123055	3127200	-	Cre09.g386875.t1.1	Cre09.g386875.t1.1		3127197,3126891,3126098,3125949,3125747,3125591,3123969,3122625	3127275,3127109,3126735,3125988,3125849,3125661,3124119,3123888	
chr9	3090876	3093673	3090924	3092895	+	RAB18	Cre09.g386900.t1.2		3090876,3091152,3091414,3091772,3092016,3092393,3092710	3090996,3091245,3091491,3091828,3092137,3092474,3093673	Expressed Protein. Similar to the RabC/Rab18 family of small GTP-ases; One of 3 C-type Rabs.
chr9	3127456	3133016	3127633	3132120	+	Cre09.g386912.t1.1	Cre09.g386912.t1.1		3127456,3127922,3128237,3128857,3129048,3129380,3129676,3129864,3130397,3130595,3131052,3131435,3132006	3127751,3128028,3128286,3128922,3129058,3129401,3129742,3129987,3130428,3130690,3131149,3131504,3133016	
chr9	3133020	3136085	3133557	3135713	-	Cre09.g386949.t1.1	Cre09.g386949.t1.1		3135583,3135238,3134825,3134544,3134254,3133020	3136085,3135282,3134958,3134691,3134360,3133788	
chr9	3088805	3090765	3090137	3090711	-	Cre09.g386950.t1.1	Cre09.g386950.t1.1		3088805	3090765	
chr9	3136140	3139691	3137750	3139650	-	Cre09.g386986.t1.1	Cre09.g386986.t1.1		3139526,3139245,3139008,3138726,3138297,3136140	3139691,3139289,3139141,3138873,3138403,3137960	
chr9	3137267	3139691	3137750	3139650	-	Cre09.g386986.t2.1	Cre09.g386986.t2.1		3139526,3139245,3139008,3138726,3138297,3137267	3139691,3139289,3139141,3138873,3138403,3137960	
chr9	3082370	3087388	3083724	3087049	-	CGL34	Cre09.g387000.t1.2		3086899,3086091,3085562,3085133,3082370	3087388,3086627,3085705,3085237,3084651	
chr9	3140016	3150455	3141017	3150294	-	Cre09.g387023.t1.1	Cre09.g387023.t1.1		3150237,3149776,3142617,3142365,3142111,3141777,3140016	3150455,3149842,3149621,3142431,3142220,3141864,3141549	
chr9	3077885	3082362	3078014	3081714	+	FRK1	Cre09.g387050.t1.2		3077885,3078569,3078824,3079268,3079814,3080168,3080523,3080765,3081166,3081504	3078228,3078672,3078937,3079531,3079937,3080256,3080605,3080879,3081273,3082362	
chr9	3150592	3155429	3151284	3154391	+	Cre09.g387060.t1.1	Cre09.g387060.t1.1		3150592,3151022,3151268,3152047,3152817,3153271,3153539,3153846	3150919,3151074,3151786,3152598,3153073,3153366,3153644,3155429	
chr9	3155440	3159775	3155512	3159637	-	Cre09.g387097.t1.1	Cre09.g387097.t1.1		3158756,3158225,3157722,3157496,3157200,3156087,3155440	3159775,3158509,3157886,3157544,3157329,3156976,3155893	
chr9	3074442	3077750	3074910	3077722	-	CGL12	Cre09.g387100.t1.1		3077629,3077446,3077261,3076880,3076514,3075941,3075630,3075224,3074442	3077750,3077547,3077374,3076942,3076588,3076081,3075701,3075415,3074955	
chr9	3159869	3162965	3160346	3162747	-	Cre09.g387134.t1.1	Cre09.g387134.t1.1		3162663,3162481,3162187,3161894,3161635,3161440,3161206,3160919,3160676,3159869	3162965,3162546,3162351,3162001,3161702,3161482,3161263,3160955,3160733,3160442	
chr9	3066830	3073425	3068546	3073020	-	HSF1	Cre09.g387150.t1.2		3072976,3072787,3072519,3071825,3071465,3070707,3069944,3069432,3066830	3073425,3072849,3072618,3072124,3071604,3070861,3070564,3069721,3069239	There are two HSF genes in genome; involved in stress response regulation
chr9	3163069	3167065	3163595	3166937	-	RHM1	Cre09.g387171.t1.1		3166901,3166644,3166358,3166212,3165954,3165643,3165233,3164874,3164605,3164188,3163802,3163069	3167065,3166742,3166393,3166264,3166070,3165742,3165355,3164936,3164667,3164307,3163879,3163640	ts-lethal mutant has fragile cell membrane when poked with a needle at restrictive temperature (PMID 29743196)
chr9	3163069	3167185	3163595	3166937	-	RHM1	Cre09.g387171.t2.1		3166901,3166644,3166358,3166212,3165954,3165643,3165233,3164874,3164605,3164188,3163802,3163069	3167185,3166742,3166393,3166264,3166070,3165742,3165355,3164936,3164667,3164307,3163879,3163640	ts-lethal mutant has fragile cell membrane when poked with a needle at restrictive temperature (PMID 29743196)
chr9	3057490	3065785	3058919	3065514	-	CYG28	Cre09.g387200.t1.1		3065427,3065097,3064801,3064408,3063857,3063466,3063171,3062853,3062440,3062107,3061894,3061692,3061483,3061160,3061004,3060796,3057490	3065785,3065205,3064849,3064546,3063992,3063543,3063295,3062939,3062549,3062287,3061953,3061733,3061577,3061392,3061032,3060883,3060691	similar to guanylyl cyclase beta-3 [Apis mellifera]
chr9	3167587	3172865	3168808	3172723	-	Cre09.g387208.t1.1	Cre09.g387208.t1.1		3172434,3172024,3170736,3170229,3169661,3167587	3172865,3172115,3171707,3170357,3169972,3169522	
chr9	3173055	3182369	3173820	3182331	-	Cre09.g387245.t1.1	Cre09.g387245.t1.1		3182082,3181541,3181141,3180644,3180207,3179666,3179130,3178680,3178235,3177332,3176821,3176458,3176007,3175715,3175346,3174907,3174422,3173055	3182369,3181612,3181209,3180787,3180351,3179811,3179274,3178817,3178323,3177423,3176967,3176646,3176085,3175846,3175405,3174976,3174527,3174046	
chr9	3052666	3057462	3052787	3056560	+	CSR3	Cre09.g387250.t1.1		3052666,3052964,3053398,3054066,3054687,3055195,3055633,3055993,3056250,3056496	3052898,3053106,3053521,3054253,3054818,3055306,3055786,3056057,3056323,3057462	
chr9	3182534	3186069	3182969	3185940	-	Cre09.g387282.t1.1	Cre09.g387282.t1.1		3185850,3185441,3184988,3184065,3183587,3183303,3182534	3186069,3185713,3185116,3184583,3183725,3183403,3183062	
chr9	3048936	3052613	3049293	3052260	+	Cre09.g387300.t1.1	Cre09.g387300.t1.1		3048936,3049258,3050354,3050820,3051343,3051685,3052039,3052247	3049101,3050085,3050518,3051188,3051523,3051879,3052135,3052613	
chr9	3186180	3189521	3186307	3188990	+	Cre09.g387319.t1.1	Cre09.g387319.t1.1		3186180,3187042,3187387,3187679,3188285,3188677	3186640,3187169,3187483,3187877,3188459,3189521	
chr9	3040386	3048745	3041262	3047434	+	CYG30	Cre09.g387350.t1.2		3040386,3041251,3041782,3042001,3042269,3042886,3043456,3043693,3044024,3044306,3044516,3044894,3045091,3045497,3045688,3046051,3046231,3046442	3040894,3041379,3041809,3042077,3042331,3043002,3043527,3043835,3044117,3044415,3044696,3044953,3045132,3045591,3045920,3046079,3046318,3048745	similar to guanylyl cyclase beta-3 [Apis mellifera]
chr9	3189524	3192959	3190007	3192851	-	Cre09.g387356.t1.1	Cre09.g387356.t1.1		3192746,3190800,3190478,3189524	3192959,3192005,3190567,3190187	
chr9	3193010	3199249	3193716	3199123	-	Cre09.g387393.t1.1	Cre09.g387393.t1.1		3198921,3198589,3198422,3197978,3197537,3196835,3196487,3195832,3195604,3195173,3194711,3194241,3193010	3199249,3198722,3198497,3198063,3197626,3196990,3196614,3195942,3195636,3195254,3194868,3194388,3194040	
chr9	3011840	3038275	3012203	3038063	-	POLZ1	Cre09.g387400.t1.1		3037874,3037654,3037227,3036932,3036259,3036083,3035791,3035369,3034435,3023571,3023318,3021257,3020970,3020144,3019741,3019391,3019025,3018667,3018296,3017905,3017413,3017074,3016544,3016074,3015738,3015388,3015137,3014876,3014491,3014003,3013543,3013225,3013039,3011840	3038275,3037711,3037518,3037043,3036756,3036168,3035863,3035548,3035193,3034280,3023376,3023231,3021073,3020789,3019932,3019580,3019136,3018787,3018406,3017965,3017756,3017169,3016708,3016145,3015833,3015480,3015232,3014961,3014627,3014130,3013699,3013289,3013088,3012681	Homologous to eukaryotic DNA polymerase zeta.  Involved in bypass synthesis/translesion synthesis/mutagenic DNA replication; a class B polymerase
chr9	3199350	3202891	3199856	3200904	+	Cre09.g387430.t1.1	Cre09.g387430.t1.1		3199350,3200322,3200854	3200096,3200658,3202891	
chr9	3199350	3202891	3199856	3200904	+	Cre09.g387430.t2.1	Cre09.g387430.t2.1		3199350,3199766,3200322,3200854	3199597,3200096,3200658,3202891	
chr9	3199350	3202891	3199856	3200691	+	Cre09.g387430.t3.1	Cre09.g387430.t3.1		3199350,3200322	3200096,3202891	
chr9	3007447	3011785	3009392	3011736	-	OPR37	Cre09.g387450.t1.1		3011686,3011317,3010747,3009989,3007447	3011785,3011518,3010925,3010560,3009823	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; next to OPR38
chr9	3203305	3205789	3203818	3205339	-	Cre09.g387467.t1.1	Cre09.g387467.t1.1		3205602,3205477,3205145,3204849,3204570,3204174,3203305	3205789,3205525,3205356,3204988,3204707,3204466,3204025	
chr9	2995809	3000225	2996090	2998270	+	OPR38	Cre09.g387500.t1.2		2995809,2996471,2996778,2997121,2997857	2996149,2996681,2996953,2997692,3000225	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain; next to OPR37
chr9	3004203	3006818	3006258	3006699	-	Cre09.g387502.t1.1	Cre09.g387502.t1.1		3006551,3004203	3006818,3006284	
chr9	3206062	3207799	3206541	3207745	-	Cre09.g387504.t1.1	Cre09.g387504.t1.1		3207637,3207346,3207115,3206062	3207799,3207477,3207198,3206883	
chr9	3207920	3212075	3208192	3211095	+	Cre09.g387541.t1.1	Cre09.g387541.t1.1		3207920,3208463,3208730,3209311	3208334,3208621,3209092,3212075	
chr9	2991309	2995710	2991381	2995088	+	CGL142	Cre09.g387550.t1.1		2991309,2991496,2991682,2992189,2992410,2992772,2992986,2993420,2993734,2994117,2994396,2994961	2991414,2991597,2992053,2992245,2992550,2992852,2993169,2993558,2993921,2994225,2994839,2995710	
chr9	3212140	3216061	3212288	3215100	+	Cre09.g387578.t1.1	Cre09.g387578.t1.1		3212140,3212423,3212807,3213085,3213522,3213825,3214097,3214296,3214506	3212343,3212610,3212915,3213216,3213681,3213932,3214141,3214347,3216061	
chr9	2983039	2991258	2983149	2990871	+	Cre09.g387600.t1.2	Cre09.g387600.t1.2		2983039,2983241,2983448,2987451,2987711,2988888,2989080,2989343,2989554,2989930,2990222,2990468,2990769	2983158,2983358,2987244,2987558,2988767,2988974,2989219,2989402,2989790,2990088,2990317,2990611,2991258	null-allele mutant was isolated (PMID 29743196)
chr9	3216110	3219791	3216251	3219193	+	Cre09.g387615.t1.1	Cre09.g387615.t1.1		3216110,3216381,3216743,3217070,3217399,3217749,3218035,3218280,3218536	3216324,3216550,3216842,3217192,3217558,3217856,3218079,3218331,3219791	
chr9	2978346	2982558	2978481	2982441	-	Cre09.g387650.t1.2	Cre09.g387650.t1.2		2982255,2981862,2981569,2981310,2980833,2980152,2979853,2979516,2979263,2978346	2982558,2982087,2981680,2981418,2981111,2980678,2980069,2979681,2979396,2979159	
chr9	3219794	3223989	3220413	3223640	-	Cre09.g387652.t1.1	Cre09.g387652.t1.1		3223596,3223413,3222962,3222513,3222304,3222011,3221582,3221271,3220984,3220722,3219794	3223989,3223497,3223203,3222584,3222384,3222116,3221705,3221344,3221118,3220850,3220434	
chr9	3224100	3236841	3224476	3236388	+	FAP76	Cre09.g387689.t1.1		3224100,3224817,3225050,3225528,3226030,3226275,3226625,3226952,3227345,3227891,3228324,3228726,3229415,3229818,3230239,3230757,3231125,3231622,3232333,3232941,3233396,3233840,3234296,3234733,3235099,3235430,3236388	3224596,3224891,3225205,3225707,3226125,3226402,3226771,3227144,3227672,3228065,3228480,3229124,3229536,3229938,3230481,3230915,3231256,3232080,3232671,3233084,3233589,3234026,3234575,3234885,3235202,3236213,3236841	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr9	2975239	2978122	2975607	2977752	+	Cre09.g387700.t1.2	Cre09.g387700.t1.2		2975239,2975890,2976348,2976762,2977265,2977598	2975660,2976124,2976542,2976905,2977389,2978122	
chr9	3236845	3241559	3237522	3241412	-	AST1	Cre09.g387726.t1.1		3241408,3241221,3240595,3240224,3239839,3239353,3238959,3238673,3238346,3237872,3236845	3241559,3241309,3240690,3240416,3239969,3239568,3239110,3238718,3238435,3238001,3237677	Putative aspartate aminotransferase (EC 2.6.1.1); no organelle targeting sequence predicted by Target-P, but plastidic by homology, Found in the mitochondrial proteomic survey
chr9	2963969	2975015	2964495	2974315	+	Cre09.g387750.t1.1	Cre09.g387750.t1.1		2963969,2964476,2964756,2965227,2965497,2965831,2966111,2967886,2968279,2972016,2972793,2973051,2973445,2973751,2973937	2964149,2964568,2964925,2965322,2965574,2965950,2967460,2968141,2971814,2972558,2972845,2973189,2973542,2973793,2975015	
chr9	3241660	3247271	3241853	3246744	+	Cre09.g387763.t1.1	Cre09.g387763.t1.1		3241660,3241982,3242418,3242769,3242987,3243320,3243868,3244250,3244643,3245065,3245375,3245677,3245892,3246357	3241874,3242020,3242570,3242832,3243018,3243411,3243952,3244324,3244751,3245163,3245442,3245704,3246034,3247271	
chr9	2960759	2963680	2960817	2963095	+	FER1	Cre09.g387800.t1.2		2960759,2960977,2961466,2961776,2962248,2962635,2962972	2960885,2961067,2961572,2961911,2962328,2962778,2963680	ferritin, chloroplast precursor, pre-apoferritin gi 20530724 gb AF503338
chr9	3247282	3252149	3247766	3252087	-	Cre09.g387801.t1.1	Cre09.g387801.t1.1		3251967,3251677,3251347,3250848,3250566,3250353,3249888,3249571,3249175,3248850,3248497,3247282	3252149,3251816,3251423,3250917,3250640,3250410,3249934,3249690,3249289,3248938,3248626,3248204	
chr9	3252250	3253931	3252336	3253401	+	Cre09.g387838.t1.1	Cre09.g387838.t1.1		3252250,3252709,3252973,3253320	3252435,3252765,3253065,3253931	
chr9	2952309	2960384	2952662	2959339	+	RWP13	Cre09.g387850.t1.2		2952309,2953262,2953637,2953930,2955170,2958160	2952827,2953438,2953725,2954815,2957947,2960384	putative RWP-RK domain transcription factor [PMID: 15785851]
chr9	3253979	3256301	3254103	3255385	+	Cre09.g387875.t1.1	Cre09.g387875.t1.1		3253979,3254248,3254703,3255000,3255331	3254117,3254518,3254845,3255096,3256301	
chr9	2942339	2952250	2942614	2950992	+	Cre09.g387900.t1.1	Cre09.g387900.t1.1		2942339,2942807,2943524,2944352,2945937,2947768,2950892	2942699,2943267,2944226,2945787,2947596,2950765,2952250	
chr9	3256350	3264828	3256355	3264154	+	FAP139	Cre09.g387912.t1.1		3256350,3256985,3257649,3257903,3258180,3258484,3259096,3259600,3260242,3260452,3260743,3261208,3261427	3256397,3257332,3257780,3257959,3258305,3258600,3259278,3259826,3260296,3260572,3260984,3261309,3264828	
chr9	3267000	3270940	3267228	3270189	+	Cre09.g387949.t1.1	Cre09.g387949.t1.1		3267000,3267443,3267694,3268149,3268518,3269153,3269481,3269936,3270130	3267354,3267494,3267902,3268265,3268953,3269262,3269648,3269978,3270940	
chr9	2929319	2938960	2929518	2936499	+	Cre09.g387950.t1.1	Cre09.g387950.t1.1		2929319,2930199,2930723,2930987,2931243,2931686,2931909,2932152,2932386,2932525,2932754,2933075,2933534,2933962,2935007,2935349,2935591,2935803,2936040,2936430	2929647,2930351,2930800,2931080,2931274,2931775,2931944,2932170,2932411,2932596,2932793,2933284,2933779,2934926,2935207,2935441,2935672,2935843,2936243,2938960	
chr9	2939429	2942280	2940209	2941124	+	Cre09.g387951.t1.1	Cre09.g387951.t1.1		2939429,2940076,2940704,2940947	2939472,2940239,2940805,2942280	
chr9	3272264	3274079	3273240	3274041	-	Cre09.g387986.t2.1	Cre09.g387986.t2.1		3273410,3272264	3274079,3273240	
chr9	3270814	3274079	3271770	3274041	-	Cre09.g387986.t1.1	Cre09.g387986.t1.1		3273410,3272445,3270814	3274079,3273240,3271770	
chr9	2924140	2929100	2924335	2927301	+	CDKD1	Cre09.g388000.t1.2		2924140,2924698,2924969,2925202,2925524,2925748,2926045,2926445,2926789,2927212	2924413,2924763,2925076,2925326,2925581,2925813,2926157,2926607,2926984,2929100	Cyclin dependent kinase activating kinase; homologous to plant CDKD and animal CDK7 subfamilies; DPTLARE motif.  Putative CAK function
chr9	3270974	3272199	3271259	3271479	-	Cre09.g388023.t1.1	Cre09.g388023.t1.1		3271988,3270974	3272199,3271770	
chr9	2920409	2924028	2920874	2923886	-	Cre09.g388050.t1.2	Cre09.g388050.t1.2		2923856,2923399,2923129,2922915,2922482,2921857,2921368,2920409	2924028,2923779,2923263,2922965,2922757,2922258,2921636,2921214	
chr9	3275988	3282739	3276329	3282530	-	VDR1	Cre09.g388060.t1.1		3282218,3281532,3280870,3280569,3280244,3279968,3279754,3279460,3279187,3278912,3278287,3277901,3277635,3277383,3277115,3276793,3275988	3282739,3281985,3281379,3280694,3280338,3280054,3279803,3279598,3279254,3278987,3278404,3278059,3277710,3277464,3277174,3276862,3276520	null-allele mutant was isolated (PMID 29743196)
chr9	3283219	3289789	3283678	3289536	-	OEP80	Cre09.g388097.t1.1		3289299,3288956,3288744,3288374,3287893,3287395,3287026,3286746,3286291,3285928,3285638,3285166,3284895,3284217,3283219	3289789,3289003,3288791,3288466,3287976,3287487,3287193,3286862,3286470,3286027,3285755,3285318,3284985,3284355,3283965	chloroplast outer envelope protein homologous to TOC75
chr9	2915533	2920318	2915828	2920208	-	Cre09.g388100.t1.1	Cre09.g388100.t1.1		2920160,2919995,2919839,2918500,2917051,2916867,2916127,2915533	2920318,2920069,2919918,2919705,2918311,2916956,2916777,2915978	
chr9	3289990	3294595	3290517	3293445	+	Cre09.g388134.t1.1	Cre09.g388134.t1.1		3289990,3290438,3290950,3291299,3291753	3290326,3290639,3291152,3291480,3294595	
chr9	2913539	2915530	2913677	2914602	+	MRPL36	Cre09.g388150.t1.2		2913539,2913975,2914218,2914511	2913700,2914062,2914396,2915530	
chr9	3294950	3298297	3295331	3298013	+	Cre09.g388171.t1.1	Cre09.g388171.t1.1		3294950,3295562,3296057,3296612,3296847,3297124,3297449,3297779	3295419,3295676,3296129,3296680,3296906,3297219,3297538,3298297	
chr9	2910204	2913438	2910629	2912769	-	RPL10	Cre09.g388200.t1.1		2913381,2912608,2911884,2911577,2911127,2910204	2913438,2912774,2912025,2911672,2911239,2910810	Cytosolic 60S large ribosomal subunit protein L10
chr9	3298469	3301281	3298534	3300844	+	Cre09.g388208.t1.1	Cre09.g388208.t1.1		3298469,3298786,3299137,3299309,3299602,3299940,3300374,3300692	3298605,3298880,3299197,3299392,3299743,3300140,3300467,3301281	
chr9	3301284	3303129	3301594	3303103	-	Cre09.g388245.t1.1	Cre09.g388245.t1.1		3302962,3302750,3302514,3301284	3303129,3302813,3302626,3302320	
chr9	3303184	3305929	3303542	3305728	-	MRPS18	Cre09.g388282.t1.1		3305502,3304820,3304482,3304079,3303184	3305929,3305229,3304574,3304182,3303780	
chr9	3306030	3310931	3306132	3309984	+	Cre09.g388319.t1.1	Cre09.g388319.t1.1		3306030,3306546,3306767,3307074,3307351,3307775,3308288,3309222	3306220,3306641,3306834,3307196,3307509,3308029,3308422,3310931	
chr9	2888111	2893452	2888203	2892824	+	MMP11	Cre09.g388350.t1.1		2888111,2888446,2888715,2889143,2889471,2889752,2889999,2890292,2890526,2891182,2891474,2891755,2892046,2892266,2892552	2888354,2888571,2888962,2889305,2889549,2889820,2890161,2890342,2890891,2891211,2891605,2891921,2892130,2892353,2893452	belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoproteins (cell wall glycoproteins) with a hydroxyproline-rich (HR) domain [PMID: 12034745]
chr9	2893511	2896174	2894033	2895690	+	PHC32	Cre09.g388351.t1.1		2893511,2894016,2894657	2893709,2894584,2896174	
chr9	2896312	2901488	2897540	2900587	-	Cre09.g388352.t1.1	Cre09.g388352.t1.1		2900727,2900508,2899606,2899274,2898028,2896312	2901488,2900595,2900339,2899416,2898946,2897777	
chr9	2901591	2904798	2902241	2903973	-	PHC34	Cre09.g388353.t1.1		2904303,2901591	2904798,2903990	
chr9	2905893	2909768	2906932	2908655	-	PHC33	Cre09.g388355.t1.1		2908985,2905893	2909768,2908672	belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain
chr9	3310934	3318859	3311460	3318665	-	TBC2	Cre09.g388356.t1.1		3318644,3318160,3316876,3316356,3316020,3315577,3315192,3314757,3314317,3313762,3313513,3313050,3312686,3311839,3310934	3318859,3318471,3317808,3316535,3316111,3315685,3315358,3314916,3314424,3313883,3313627,3313241,3312784,3312429,3311607	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; activates translation of psbC mRNA
chr9	2881411	2888032	2881656	2887356	+	RAT2	Cre09.g388372.t1.2		2881411,2882234,2882741,2883144,2883698,2884034,2884469,2885685,2885980,2886708	2882018,2882602,2882987,2883468,2883822,2884299,2885569,2885823,2886525,2888032	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; stabilizes tscA mRNA to allow psaA trans-splicing
chr9	3319110	3326331	3319356	3325742	+	ELG13	Cre09.g388393.t1.1		3319110,3319691,3319934,3320350,3320710,3321131,3321453,3321816,3322140,3322544,3323122,3323583,3324052,3324547,3324977,3325314,3325642	3319468,3319756,3320031,3320459,3320806,3321237,3321670,3321903,3322273,3322713,3323253,3323707,3324124,3324736,3325107,3325453,3326331	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr9	2878205	2881300	2879102	2881093	-	RAT1	Cre09.g388400.t1.2		2880952,2880701,2880509,2880248,2879911,2879599,2879348,2878205	2881300,2880832,2880568,2880324,2879967,2879665,2879395,2879189	thylakoid membrane protein necessary for 3' end maturation of tscA mRNA, hence for psaA trans-splicing of exons 1 and 2 (PMID: 16115062); has homologues of unknown function in a broad range of organisms; reported similarity to NAD+ binding domain of PARP is dubious
chr9	3326333	3333409	3326963	3333314	-	Cre09.g388430.t1.1	Cre09.g388430.t1.1		3333205,3333027,3332624,3332233,3331073,3330827,3330449,3328766,3328442,3327915,3326333	3333409,3333116,3332867,3332446,3332074,3330880,3330631,3330223,3328555,3328256,3326990	
chr9	2871838	2878192	2872049	2878163	+	ELG29	Cre09.g388450.t1.1		2871838,2873006,2873327,2873707,2874020,2874389,2874759,2875262,2875663,2876217,2876466,2876784,2877125,2877330,2877643,2877857	2872828,2873122,2873513,2873879,2874208,2874616,2875002,2875351,2875803,2876303,2876577,2876959,2877204,2877489,2877720,2878192	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr9	3333578	3339901	3333714	3339558	+	Cre09.g388467.t1.1	Cre09.g388467.t1.1		3333578,3333833,3334004,3334292,3334976,3335369,3335699,3336099,3336624,3336805,3337223,3337854,3338230,3338628,3339082,3339546	3333717,3333916,3334066,3334375,3335047,3335413,3335778,3336240,3336700,3336971,3337320,3337980,3338279,3338722,3339211,3339901	
chr9	2866461	2871730	2866745	2871540	-	Cre09.g388500.t1.2	Cre09.g388500.t1.2		2871045,2870755,2870250,2869506,2868936,2868557,2868204,2867939,2867578,2867293,2866461	2871730,2870826,2870480,2869949,2869211,2868622,2868305,2868031,2867784,2867412,2867144	
chr9	3340034	3346489	3341874	3346138	-	Cre09.g388504.t1.1	Cre09.g388504.t1.1		3343130,3340034	3346489,3342835	
chr9	3346939	3349540	3347153	3348915	+	Cre09.g388541.t1.1	Cre09.g388541.t1.1		3346939,3348342	3347843,3349540	
chr9	2863961	2866414	2864028	2866013	+	MRPL21	Cre09.g388550.t1.2		2863961,2865063,2865518,2865842	2864706,2865239,2865604,2866414	
chr9	3349589	3350840	3349709	3350516	+	Cre09.g388578.t1.1	Cre09.g388578.t1.1		3349589,3350063,3350354	3349737,3350148,3350840	
chr9	2847735	2863820	2848425	2863456	-	Cre09.g388600.t1.1	Cre09.g388600.t1.1		2863591,2863420,2862592,2861894,2860240,2859085,2858270,2849391,2847735	2863820,2863468,2863074,2862112,2861588,2860096,2858896,2857874,2849190	
chr9	3350889	3354830	3350901	3354431	+	Cre09.g388615.t1.1	Cre09.g388615.t1.1		3350889,3351004,3351380,3351682,3351931,3352165,3352571,3352915,3353130,3353494,3353717,3353916,3354314	3350923,3351080,3351464,3351791,3351969,3352323,3352655,3352981,3353199,3353568,3353795,3354031,3354830	
chr9	2840925	2847680	2842343	2847603	-	CYG29	Cre09.g388650.t1.1		2847585,2847492,2847103,2846917,2846517,2846265,2845948,2845535,2845234,2844959,2844673,2844200,2843927,2843601,2843438,2843218,2840925	2847680,2847531,2847180,2846966,2846621,2846327,2846047,2845648,2845355,2845045,2844782,2844440,2844063,2843833,2843466,2843305,2843056	C-terminal domain similar to guanylyl cyclase beta-3 [Apis mellifera]
chr9	3354939	3358630	3354984	3358315	+	Cre09.g388652.t1.1	Cre09.g388652.t1.1		3354939	3358630	
chr9	3358633	3366318	3360116	3366036	-	Cre09.g388689.t1.1	Cre09.g388689.t1.1		3365738,3365166,3364627,3364272,3362957,3362676,3362185,3361979,3361705,3361497,3361243,3360893,3360705,3358633	3366318,3365473,3364869,3364472,3363997,3362785,3362302,3362077,3361780,3361569,3361339,3360942,3360765,3360482	
chr9	2830931	2840888	2831188	2839360	+	Cre09.g388700.t1.1	Cre09.g388700.t1.1		2830931,2832662,2833224,2833615,2838286,2838687,2838912,2839288	2832424,2833118,2833405,2838129,2838483,2838758,2839085,2840888	
chr9	3366453	3372150	3366591	3371120	+	Cre09.g388726.t1.1	Cre09.g388726.t1.1		3366453,3366888,3367571,3367887,3368060,3368271,3368656,3370127,3370387,3370641,3370844,3371009	3366809,3366936,3367704,3367968,3368171,3368391,3368707,3370217,3370448,3370706,3370858,3372150	
chr9	3366453	3369750	3366591	3368717	+	Cre09.g388726.t2.1	Cre09.g388726.t2.1		3366453,3366888,3367571,3367887,3368060,3368271,3368656	3366809,3366936,3367704,3367968,3368171,3368391,3369750	
chr9	3366453	3369650	3366591	3368656	+	Cre09.g388726.t3.1	Cre09.g388726.t3.1		3366453,3366888,3367571,3367887,3368060,3368271,3368478,3368656	3366809,3366936,3367704,3367968,3368171,3368391,3368534,3369650	
chr9	3369799	3372150	3369884	3371120	+	Cre09.g388726.t4.1	Cre09.g388726.t4.1		3369799,3370127,3370387,3370641,3370844,3371009	3369911,3370217,3370448,3370706,3370858,3372150	
chr9	2824325	2830821	2824651	2830454	-	TEF21	Cre09.g388750.t1.2		2830240,2829823,2829277,2828861,2828553,2828197,2827774,2827455,2827168,2826791,2826549,2826081,2825701,2824963,2824325	2830821,2829977,2829479,2829009,2828659,2828338,2827916,2827523,2827242,2826935,2826658,2826117,2825816,2825067,2824804	Putative phosphoinositide phosphatase, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr9	3373489	3377999	3373835	3376922	+	Cre09.g388763.t1.1	Cre09.g388763.t1.1		3373489,3374076,3374909,3375226,3375425,3375703,3376134,3376448	3373895,3374585,3375021,3375279,3375511,3376018,3376259,3377999	
chr9	2819531	2824322	2819737	2824013	+	GDH1	Cre09.g388800.t1.2		2819531,2820144,2820343,2820616,2821031,2821431,2821760,2822069,2822328,2822514,2822966,2823262,2823654,2823880	2819875,2820182,2820372,2820705,2821077,2821563,2821889,2822199,2822387,2822631,2823075,2823414,2823688,2824322	glutamate dehydrogenase (EC 1.4.1.2); predicted by Target-P and iPSORT to be mitochondrial
chr9	3380223	3387084	3380747	3386976	-	Cre09.g388801.t1.1	Cre09.g388801.t1.1		3386933,3385888,3385739,3385466,3385203,3384941,3383969,3383758,3383238,3383032,3382787,3382571,3382317,3382003,3381604,3381416,3381133,3380223	3387084,3386631,3385778,3385514,3385349,3385087,3384121,3383874,3383591,3383091,3382903,3382620,3382421,3382153,3381904,3381485,3381282,3381048	
chr9	3387209	3389101	3387250	3388436	+	Cre09.g388838.t1.1	Cre09.g388838.t1.1		3387209,3387342,3387625,3388239	3387261,3387412,3388098,3389101	
chr9	2803531	2812669	2803634	2811697	+	FAP329	Cre09.g388850.t1.1		2803531,2803831,2804189,2804545,2804700,2805198,2805672,2806106,2806496,2806867,2807260,2807559,2807877,2808241,2808593,2809013,2809354,2809842,2810225,2810726,2811141,2811459	2803727,2804007,2804254,2804604,2804742,2805355,2805797,2806299,2806659,2807078,2807400,2807684,2808012,2808381,2808711,2809168,2809677,2810024,2810536,2810935,2811268,2812669	Related to plant potential calcium-transporting ATPase 9, plasma membrane-type (Ca(2+)-ATPase isoform 9); found in the flagellar proteome [PMID: 15998802]
chr9	2812798	2818180	2813149	2817436	-	Cre09.g388852.t1.1	Cre09.g388852.t1.1		2817387,2816564,2816320,2815519,2815359,2813455,2812798	2818180,2817081,2816384,2816056,2815437,2815043,2813245	
chr9	3389149	3397342	3389223	3395097	+	Cre09.g388875.t1.1	Cre09.g388875.t1.1		3389149,3389893,3390023,3390184,3390341,3390528,3390767,3390925,3391186,3391338,3391598,3392112,3392951,3393272,3393576,3393795,3394002,3394332,3394493,3394658,3394989	3389592,3389908,3390073,3390233,3390365,3390639,3390815,3390976,3391230,3391453,3391858,3392783,3393082,3393427,3393677,3393867,3394174,3394356,3394517,3394784,3397342	
chr9	2799101	2803439	2799331	2802704	+	TEH10	Cre09.g388900.t1.2		2799101,2799509,2799843,2800672,2800970,2801283,2801700,2802068,2802352,2802681	2799373,2799588,2800448,2800765,2801062,2801522,2801756,2802231,2802518,2803439	
chr9	3397353	3398948	3398059	3398740	-	Cre09.g388912.t1.1	Cre09.g388912.t1.1		3398202,3397353	3398948,3398059	
chr9	3399013	3404688	3400605	3404377	-	Cre09.g388949.t1.1	Cre09.g388949.t1.1		3404247,3403939,3403784,3402573,3401894,3401391,3401013,3399013	3404688,3404009,3403837,3403499,3402298,3401676,3401119,3400656	
chr9	3404789	3411210	3404890	3410832	+	Cre09.g388986.t1.1	Cre09.g388986.t1.1		3404789,3405315,3405923,3406352,3406925,3407302,3407763,3408080,3408368,3409116,3410076,3410689	3404971,3405665,3406199,3406771,3407085,3407502,3407840,3408253,3408753,3409923,3410238,3411210	
chr9	2788483	2791870	2789571	2791503	-	Cre09.g389000.t1.1	Cre09.g389000.t1.1		2791470,2791181,2790773,2790398,2790011,2788483	2791870,2791306,2790937,2790487,2790148,2789703	
chr9	2791925	2798980	2792230	2798744	-	Cre09.g389001.t1.1	Cre09.g389001.t1.1		2798168,2797971,2797526,2796952,2796608,2796261,2795176,2794748,2794102,2793172,2792797,2792582,2791925	2798980,2798027,2797809,2797268,2796707,2796387,2795958,2794906,2794527,2793916,2792944,2792655,2792409	
chr9	3411214	3415818	3411486	3415563	-	Cre09.g389023.t1.1	Cre09.g389023.t1.1		3415137,3414856,3414378,3414023,3413232,3412893,3412581,3411214	3415818,3414954,3414541,3414146,3413760,3412984,3412778,3412305	
chr9	2774441	2788457	2775013	2787278	+	MAW4	Cre09.g389050.t1.1		2774441,2775480,2775829,2776069,2776400,2776590,2776790,2777085,2777308,2777527,2777934,2778358,2778634,2778858,2779078,2779363,2779624,2779925,2780228,2780620,2780945,2781413,2782941,2783513,2784033,2784403,2784719,2785351,2785641,2786329	2775176,2775642,2775924,2776180,2776429,2776690,2776948,2777173,2777345,2777654,2778061,2778510,2778730,2778890,2779218,2779461,2779787,2780013,2780382,2780731,2781064,2782762,2783254,2783686,2784165,2784475,2785069,2785448,2786089,2788457	Contains a predicted C-terminal transmembrane domain.
chr9	3416429	3422460	3416845	3421998	+	Cre09.g389060.t1.1	Cre09.g389060.t1.1		3416429,3418312,3418646,3418948,3419132,3419514,3419887,3420181,3420903,3421341,3421569,3421833	3418045,3418429,3418790,3418964,3419400,3419678,3419997,3420447,3421055,3421428,3421636,3422460	
chr9	2769851	2773742	2769928	2773192	+	CNX5	Cre09.g389089.t1.2		2769851,2770292,2770540,2770831,2771216,2771651,2772009,2772330,2772728,2773092	2770013,2770317,2770599,2770979,2771468,2771722,2772115,2772404,2772790,2773742	Pfam3473, MOSC domain; COG3217
chr9	3422533	3425408	3423142	3425167	-	Cre09.g389097.t1.1	Cre09.g389097.t1.1		3423429,3422533	3425408,3423192	
chr9	2767750	2769730	2768322	2769635	-	GOT1	Cre09.g389100.t1.2		2769598,2769427,2769253,2768897,2767750	2769730,2769518,2769333,2769076,2768403	SFT2-like conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments
chr9	3425569	3430460	3426225	3430240	+	Cre09.g389134.t1.1	Cre09.g389134.t1.1		3425569,3426896,3427145,3427297,3427678,3428068,3428333,3428555,3428867,3429248,3429579,3429967	3426720,3427002,3427158,3427438,3427873,3428150,3428375,3428665,3429097,3429400,3429734,3430460	
chr9	2760761	2767662	2761092	2766674	+	FAP93	Cre09.g389150.t1.2		2760761,2761305,2761644,2762230,2762595,2762910,2763540,2764049,2764501	2761122,2761432,2761938,2762345,2762726,2763332,2763818,2764336,2767662	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr9	3430509	3431660	3430582	3431478	+	Cre09.g389171.t1.1	Cre09.g389171.t1.1		3430509,3430970,3431442	3430786,3431098,3431660	
chr9	2757749	2760622	2758011	2760309	-	UMM8	Cre09.g389200.t1.1		2760026,2759798,2759596,2759217,2758889,2757749	2760622,2759892,2759637,2759378,2759038,2758704	UbiE/COQ5 methyltransferase family; possible phosphoethanolamine N-methyltransferase
chr9	3431662	3435268	3433004	3435083	-	Cre09.g389208.t1.1	Cre09.g389208.t1.1		3434937,3434285,3433948,3433659,3433333,3431662	3435268,3434448,3434066,3433709,3433431,3433106	
chr9	3435379	3442760	3435621	3442237	+	Cre09.g389245.t1.1	Cre09.g389245.t1.1		3435379,3435890,3436175,3436468,3436753,3437145,3437526,3437779,3438223,3438541,3439109,3440001,3440260	3435669,3435942,3436223,3436616,3436970,3437222,3437638,3437978,3438406,3438960,3439858,3440060,3442760	
chr9	2753401	2757653	2753540	2756884	+	AOF1	Cre09.g389250.t1.2		2753401,2753944,2754367,2754776,2755265,2755740,2756650	2753675,2754144,2754571,2755062,2755462,2755841,2757653	
chr9	3443000	3446775	3443277	3446502	+	FAP114	Cre09.g389282.t1.1		3443000,3443460,3443663,3443989,3445331,3445588,3445884,3446113,3446364	3443366,3443546,3443745,3444092,3445441,3445689,3445988,3446154,3446775	also known as C1a-32; forms the C1a projection, with PF6, C1a-86, C1a-34, C1a-18, and calmodulin;  similar to C1a-34; may play a role in modulating both inner and outer dynein arm activity
chr9	2748218	2753260	2748486	2752725	-	Cre09.g389300.t1.1	Cre09.g389300.t1.1		2753129,2752948,2752387,2752072,2751799,2751151,2750504,2750274,2749236,2748783,2748218	2753260,2753023,2752790,2752218,2751917,2751691,2751058,2750376,2750093,2749098,2748653	
chr9	3447493	3450858	3448788	3450058	-	Cre09.g389319.t1.1	Cre09.g389319.t1.1		3450588,3449916,3449455,3447493	3450858,3450379,3449789,3449307	
chr9	2745021	2748212	2745408	2747798	+	Cre09.g389350.t1.1	Cre09.g389350.t1.1		2745021,2747023,2747220,2747673	2746869,2747123,2747575,2748212	
chr9	3450969	3456248	3451212	3455601	+	Cre09.g389356.t1.1	Cre09.g389356.t1.1		3450969,3451744,3452243,3452656,3453073,3453429,3453966,3454270,3454592,3455024,3455498	3451582,3451883,3452437,3452823,3453189,3453594,3454063,3454363,3454716,3455190,3456248	
chr9	3456253	3458078	3456508	3457942	-	Cre09.g389393.t1.1	Cre09.g389393.t1.1		3457815,3457333,3456902,3456253	3458078,3457727,3457038,3456686	
chr9	2739465	2744550	2740145	2744375	-	Cre09.g389400.t1.1	Cre09.g389400.t1.1		2744189,2743758,2743421,2743075,2742358,2741959,2741217,2740919,2740597,2739465	2744550,2743822,2743531,2743165,2742804,2742109,2741533,2741056,2740716,2740319	
chr9	3458193	3465158	3458325	3464653	+	Cre09.g389430.t1.1	Cre09.g389430.t1.1		3458193,3458957,3459486,3459910,3460229,3460568,3460985,3461613,3462013,3462441,3463559,3463757,3464086,3464602	3458478,3459079,3459590,3460025,3460321,3460658,3461046,3461763,3462161,3462526,3463614,3463839,3464266,3465158	
chr9	2727631	2739456	2727717	2738072	+	Cre09.g389450.t1.2	Cre09.g389450.t1.2		2727631,2728346,2728642,2729041,2729467,2729983,2730416,2730913,2731868,2732308,2733810,2734830,2735083,2735374,2735825,2736174,2736460,2737917	2727966,2728420,2728790,2729312,2729659,2730193,2730772,2731734,2732154,2733637,2734600,2734883,2735158,2735516,2735974,2736332,2737712,2739456	
chr9	3465349	3472500	3466188	3471350	+	OPR8	Cre09.g389467.t1.1		3465349,3465698,3465910,3468678,3471194	3465593,3465758,3468495,3470990,3472500	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 158 codons at 5'-end: MLLGKCGLGLQTPRTEPAAVVEVWSLRASPPTLSNGAVGAICSRRECIKINSLSQRLDAAAEALARQPPLVVGQAASGGPPRSGSSWRGHGLGTGGGSSSSSSGSGSTGGGSSRHDGSLDDLQQTSALLWDRRHSHAAASTSSAATAGTAYNPDIGDR
chr9	2719271	2725093	2719451	2724693	+	Cre09.g389500.t1.1	Cre09.g389500.t1.1		2719271,2719668,2720489,2720869,2721228,2721654,2721917,2722391,2722715,2723549,2723953,2724304,2724581	2719568,2720297,2720673,2720965,2721448,2721735,2722066,2722549,2723289,2723699,2724023,2724357,2725093	null-allele mutant was isolated (PMID 29743196)
chr9	2719271	2725093	2719451	2724693	+	Cre09.g389500.t2.1	Cre09.g389500.t2.1		2719271,2719668,2720489,2720869,2721228,2721654,2721917,2722394,2722715,2723549,2723953,2724304,2724581	2719568,2720297,2720673,2720965,2721448,2721735,2722066,2722549,2723289,2723699,2724023,2724357,2725093	null-allele mutant was isolated (PMID 29743196)
chr9	2725955	2727480	2727278	2727450	-	Cre09.g389503.t1.1	Cre09.g389503.t1.1		2725955	2727480	
chr9	3472953	3475438	3473489	3475266	-	Cre09.g389504.t1.1	Cre09.g389504.t1.1		3475128,3474745,3474532,3474390,3474043,3473718,3472953	3475438,3474908,3474602,3474409,3474256,3473872,3473528	
chr9	3475592	3482328	3475870	3482216	-	OPR9	Cre09.g389541.t1.1		3482032,3481741,3481149,3480294,3479963,3479642,3478569,3477987,3477580,3477286,3476699,3476303,3476064,3475592	3482328,3481833,3481618,3480905,3480043,3479758,3479393,3478289,3477775,3477461,3477122,3476466,3476111,3475924	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; contains a C-terminal RAP domain
chr9	2715761	2719212	2716002	2718582	+	DNJ13	Cre09.g389550.t1.1		2715761,2716149,2716313,2716561,2716909,2717360,2717610,2717868,2718403	2716026,2716247,2716374,2716687,2717068,2717520,2717723,2718207,2719212	DnaJ-like protein; probably cytosolic, since homologs in Arabidopsis (Q9LH49 and Q9FL54) are predicted to be cytosolic; contains J-domain (pfam226) at N-terminus
chr9	3482850	3485438	3483121	3485306	-	PSBP5	Cre09.g389578.t1.1		3485173,3484869,3484485,3484124,3483870,3483450,3482850	3485438,3484973,3484628,3484349,3483999,3483565,3483224	Shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OEC23, 23 kDa subunit of oxygen evolving complex : PMID: 3468511); orthologous to At3g05410; targeted to thylakoid lumen by TAT pathway, but absence of AXA cleavage site
chr9	2705585	2715630	2707665	2715526	-	Cre09.g389600.t1.1	Cre09.g389600.t1.1		2715503,2715325,2714686,2714099,2713835,2713626,2713438,2711901,2707884,2705585	2715630,2715368,2715206,2714489,2713938,2713712,2713485,2713271,2711755,2707717	
chr9	3485579	3490221	3485729	3489835	+	MAC1	Cre09.g389615.t1.1		3485579,3487149,3487497,3487829,3488119,3488918,3489355,3489637	3486956,3487364,3487598,3487989,3488716,3489195,3489523,3490221	repressed in low iron and differentially phosphorylated in response to iron availability
chr9	2695760	2705034	2696544	2704132	+	Cre09.g389650.t1.1	Cre09.g389650.t1.1		2695760,2696067,2696231,2696751,2697286,2697513,2697741,2697950,2699855,2704065	2695977,2696107,2696604,2697141,2697389,2697599,2697788,2699713,2703909,2705034	
chr9	3490293	3492858	3490760	3492421	-	Cre09.g389652.t1.1	Cre09.g389652.t1.1		3492365,3492110,3491698,3490293	3492858,3492270,3491886,3491548	
chr9	3492913	3496817	3493491	3496793	-	ASD1	Cre09.g389689.t1.1		3496640,3496514,3496348,3495914,3495639,3495011,3494694,3494228,3493966,3492913	3496817,3496569,3496413,3496001,3495710,3495148,3494795,3494407,3494054,3493660	
chr9	2689250	2695537	2689740	2693818	+	MFT24	Cre09.g389700.t1.2		2689250,2690809,2691077,2691713,2692093,2692834,2693341,2693749	2690583,2690960,2691278,2691901,2692537,2693026,2693518,2695537	Major facilitator superfamily MFS-1 sugar transporter with Spinster-like transmembrane topology
chr9	3496939	3507957	3497183	3507653	+	Cre09.g389726.t1.1	Cre09.g389726.t1.1		3496939,3497350,3497654,3497905,3498132,3498497,3500696,3502931,3504931,3505312,3505660,3506046	3497257,3497398,3497785,3498027,3498351,3500573,3502744,3504788,3505174,3505472,3505885,3507957	
chr9	2686340	2688911	2686691	2688182	+	Cre09.g389750.t1.1	Cre09.g389750.t1.1		2686340,2686922,2687238	2686786,2687046,2688911	
chr9	3508027	3513438	3508412	3513248	-	HPAT4	Cre09.g389763.t1.1		3513128,3512997,3512816,3512660,3512364,3512066,3511556,3511313,3510983,3510631,3510394,3509478,3509178,3508998,3508800,3508027	3513438,3513030,3512847,3512717,3512452,3512155,3511887,3511415,3511111,3510760,3510494,3509547,3509341,3509069,3508850,3508589	GT8 family
chr9	3513573	3516983	3513708	3516261	+	Cre09.g389801.t2.1	Cre09.g389801.t2.1		3513573,3514006,3514238,3515838,3516132	3513924,3514128,3514402,3515906,3516983	
chr9	3513543	3516811	3513708	3516261	+	Cre09.g389801.t1.1	Cre09.g389801.t1.1		3513543,3514006,3514238,3515838,3516132	3513924,3514128,3514402,3515906,3516811	
chr9	272153	273304	272186	273120	+	Cre09.g389809.t1.1	Cre09.g389809.t1.1		272153,272732	272260,273304	
chr9	3517199	3526648	3517833	3524203	+	Cre09.g389838.t1.1	Cre09.g389838.t1.1		3517199,3517470,3517806,3518009,3519141,3519374,3520318,3520500,3520691,3521588,3521894,3522537	3517322,3517723,3517887,3518928,3519216,3520221,3520371,3520575,3521301,3521761,3522358,3526648	
chr9	2672210	2678477	2672401	2676596	+	Cre09.g389850.t1.1	Cre09.g389850.t1.1		2672210,2672860	2672610,2678477	
chr9	2678573	2685989	2679171	2685220	-	Cre09.g389851.t1.1	Cre09.g389851.t1.1		2683456,2682558,2682249,2681209,2680249,2678573	2685989,2683280,2682377,2682105,2681154,2680014	
chr9	3526944	3537675	3527436	3535993	+	PDE7	Cre09.g389875.t1.1		3526944,3527901,3528363,3528596,3528919,3529274,3529632,3530059,3530407,3530880,3531226,3531698,3533529,3533885,3534256,3534924,3535172,3535463,3535846	3527496,3528032,3528406,3528716,3529074,3529353,3529773,3530099,3530703,3530986,3531386,3533370,3533688,3534082,3534440,3535050,3535230,3535577,3537675	Cyclic nucleotide phosphodiesterase similar to calmodulin dependent phosphodiesterase from Bos taurus AAA92555.1
chr9	2665670	2670101	2665783	2669581	+	HRP4	Cre09.g389900.t1.1		2665670,2666093,2666629,2667145,2667432,2667732,2668927,2669426	2665969,2666368,2667025,2667226,2667494,2668449,2669098,2670101	partial sequence similar to hydroxyproline-rich glycoprotein family in Arabidopsis thaliana; Genbank entry NM_113865
chr9	2670110	2672049	2670462	2672002	-	Cre09.g389902.t1.1	Cre09.g389902.t1.1		2671163,2670953,2670736,2670110	2672049,2670989,2670792,2670462	
chr9	3537924	3546155	3538046	3545524	+	Cre09.g389912.t1.1	Cre09.g389912.t1.1		3537924,3538348,3538786,3539085,3539401,3539776,3540111,3540446,3540648,3541297,3541630,3541839,3542141,3542523,3543073,3543341,3543754,3544164,3544955,3545371	3538097,3538546,3538865,3539155,3539589,3539836,3540204,3540522,3540978,3541376,3541665,3541880,3542254,3542837,3543154,3543610,3543947,3544253,3545080,3546155	
chr9	3546158	3549703	3547676	3549396	-	Cre09.g389949.t1.1	Cre09.g389949.t1.1		3549377,3549032,3548651,3546158	3549703,3549182,3548915,3548519	
chr9	2661054	2665569	2661647	2665334	-	OAT1	Cre09.g389950.t1.2		2665298,2664964,2664305,2663842,2663359,2663025,2662829,2662321,2662041,2661054	2665569,2665034,2664863,2663981,2663535,2663155,2662902,2662599,2662143,2661823	similar to O-acetyltransferase-related protein of Arabidopsis thaliana; Genbank entry AY136339
chr9	3550158	3557553	3551278	3556560	-	Cre09.g389986.t1.1	Cre09.g389986.t1.1		3556980,3556696,3556542,3556392,3556061,3555794,3555416,3555035,3554317,3553786,3550158	3557553,3556740,3556589,3556448,3556212,3555902,3555598,3555172,3554793,3554157,3553600	
chr9	3550158	3557553	3551278	3556560	-	Cre09.g389986.t2.1	Cre09.g389986.t2.1		3556980,3556696,3556542,3556392,3556061,3555794,3555416,3555035,3554317,3553786,3550158	3557553,3556743,3556589,3556448,3556212,3555902,3555598,3555172,3554793,3554157,3553600	
chr9	2649270	2661051	2649405	2660811	+	Cre09.g390000.t1.2	Cre09.g390000.t1.2		2649270,2649687,2650251,2650610,2650948,2651997,2652215,2652596,2652975,2653294,2653653,2653913,2654232,2654639,2655108,2655473,2655850,2656208,2656624,2656902,2657181,2657643,2658205,2658829,2659308,2659564,2659951,2660318	2649564,2649794,2650344,2650764,2651817,2652057,2652372,2652760,2653082,2653388,2653737,2654005,2654354,2654818,2655344,2655598,2655934,2656340,2656750,2656958,2657303,2657797,2658547,2659023,2659398,2659765,2660091,2661051	SNF2-related helicase.  ChromDB CHR349; null-allele mutant was isolated (PMID 29743196)
chr9	3562194	3569138	3562808	3567084	+	CRR1	Cre09.g390023.t1.1		3562194,3562798,3563083,3565210,3566000	3562426,3562908,3564965,3565841,3569138	Copper responsive regulator 1; SBP domain containing, ankyrin repeats [gi:63145978; PMID: 16352720]
chr9	2647124	2649139	2647879	2649096	-	MOL1	Cre09.g390050.t1.2		2648864,2648560,2648267,2647124	2649139,2648636,2648353,2647981	
chr9	3569854	3574854	3569981	3574326	+	RAA4	Cre09.g390060.t1.1		3569854,3570465,3571112,3571548,3572032,3574080	3570194,3570931,3571411,3571851,3573933,3574854	Necessary for trans-splicing of psaA mRNA; no similarity to known proteins
chr9	3575016	3585203	3575985	3584979	-	Cre09.g390097.t1.1	Cre09.g390097.t1.1		3584733,3584210,3583744,3583456,3583037,3582703,3582178,3581795,3581515,3581174,3580145,3579887,3579695,3579369,3579120,3578817,3578149,3577767,3577560,3577370,3577023,3576724,3575016	3585203,3584367,3584034,3583577,3583256,3582868,3582567,3582058,3581664,3581377,3581040,3579981,3579751,3579501,3579218,3578976,3578682,3577961,3577628,3577437,3577205,3576901,3576546	
chr9	2645220	2647111	2645285	2646374	+	Cre09.g390100.t1.1	Cre09.g390100.t1.1		2645220,2645689,2646040,2646305	2645475,2645792,2646111,2647111	
chr9	3585533	3594363	3586467	3593913	-	Cre09.g390134.t1.1	Cre09.g390134.t1.1		3593817,3593335,3592990,3592684,3592392,3592088,3591581,3590702,3590302,3589802,3589593,3589412,3589146,3588909,3588575,3588157,3587852,3587644,3587463,3587108,3586751,3585533	3594363,3593492,3593106,3592848,3592513,3592264,3591868,3591402,3590558,3590188,3589663,3589471,3589278,3588995,3588704,3588435,3588025,3587712,3587530,3587290,3587030,3586563	
chr9	2634646	2641399	2637473	2640900	-	Cre09.g390150.t1.1	Cre09.g390150.t1.1		2641103,2634646	2641399,2640916	
chr9	2642154	2645119	2644420	2645085	-	Cre09.g390152.t1.1	Cre09.g390152.t1.1		2645061,2642154	2645119,2644966	
chr9	3595164	3602175	3595925	3599632	+	Cre09.g390171.t1.1	Cre09.g390171.t1.1		3595164,3596531,3596767,3597197,3597463,3597792,3597962,3598170,3598729	3596305,3596642,3597062,3597340,3597661,3597842,3598005,3598398,3602175	
chr9	2630090	2634501	2630115	2634406	+	Cre09.g390200.t1.1	Cre09.g390200.t1.1		2630090,2631419,2631887,2632162,2632429,2633776,2634037	2631012,2631480,2631962,2632236,2632542,2633856,2634501	
chr9	3602274	3615494	3602369	3614246	+	Cre09.g390208.t1.1	Cre09.g390208.t1.1		3602274,3602750,3603016,3603421,3603832,3604156,3604605,3604995,3605288,3605608,3606026,3606889,3607284,3607768,3608004,3608522,3608817,3609834,3610271,3610606,3610901,3611259,3611477,3611738,3612108,3612509,3612689,3613734	3602581,3602812,3603027,3603475,3603918,3604287,3604733,3605080,3605430,3605847,3606110,3607018,3607409,3607842,3608312,3608659,3609632,3609951,3610332,3610701,3610978,3611300,3611539,3611896,3612194,3612576,3613557,3615494	null-allele mutant was isolated (PMID 29743196)
chr9	3615541	3616855	3615622	3616367	+	Cre09.g390245.t1.1	Cre09.g390245.t1.1		3615541	3616855	
chr9	2622450	2630041	2622797	2628577	+	Cre09.g390250.t1.1	Cre09.g390250.t1.1		2622450,2623700,2624330	2622947,2623832,2630041	
chr9	3616858	3621193	3617400	3621162	-	Cre09.g390282.t1.1	Cre09.g390282.t1.1		3621156,3621034,3620891,3620551,3620288,3619752,3619331,3618992,3618443,3617923,3616858	3621193,3621083,3620963,3620690,3620381,3619902,3619440,3619049,3618645,3618012,3617640	
chr9	2608217	2622309	2610367	2621506	-	Cre09.g390300.t1.1	Cre09.g390300.t1.1		2622078,2620998,2619889,2617189,2616193,2615488,2615138,2614756,2613834,2613477,2613147,2612846,2612312,2611887,2611654,2611305,2610941,2608217	2622309,2621731,2620861,2619650,2617010,2615778,2615194,2614923,2614526,2613555,2613234,2612905,2612516,2611982,2611764,2611369,2611023,2610543	
chr9	3623524	3637475	3624023	3637129	+	Cre09.g390319.t1.1	Cre09.g390319.t1.1		3623524,3623984,3625063,3625275,3625598,3625819,3626021,3626294,3626575,3627218,3627585,3627850,3628160,3628434,3628843,3629255,3629443,3629775,3630059,3630522,3630884,3631159,3631614,3631992,3632793,3633113,3633387,3633744,3634441,3634668,3635100,3635428,3636073,3636379	3623860,3624752,3625126,3625438,3625690,3625863,3626110,3626341,3627080,3627431,3627707,3627999,3628299,3628723,3628979,3629337,3629596,3629940,3630369,3630673,3630995,3631456,3631780,3632156,3632945,3633252,3633545,3634263,3634536,3634910,3635226,3635867,3636186,3637475	
chr9	2602454	2607869	2603377	2607771	-	Cre09.g390350.t1.1	Cre09.g390350.t1.1		2607333,2606884,2606614,2605916,2605323,2604978,2604681,2604363,2602454	2607869,2606980,2606728,2606095,2605511,2605065,2604770,2604484,2604089	
chr9	3637478	3644653	3637618	3644415	-	Cre09.g390356.t1.1	Cre09.g390356.t1.1		3644313,3643127,3639986,3639714,3639340,3639181,3638954,3638703,3638365,3638102,3637885,3637478	3644653,3644187,3641478,3639837,3639541,3639243,3639010,3638807,3638559,3638257,3637916,3637787	
chr9	3642024	3642895	3642094	3642632	+	Cre09.g390393.t2.1	Cre09.g390393.t2.1		3642024	3642895	
chr9	3641784	3642895	3642094	3642632	+	Cre09.g390393.t1.1	Cre09.g390393.t1.1		3641784	3642895	
chr9	2599494	2602189	2599949	2602050	-	Cre09.g390400.t1.1	Cre09.g390400.t1.1		2601369,2601020,2599494	2602189,2601178,2600654	
chr9	3644754	3647775	3645037	3647679	+	Cre09.g390430.t1.1	Cre09.g390430.t1.1		3644754,3645340,3646371,3646637,3647097,3647557	3645047,3646142,3646421,3646758,3647314,3647775	
chr9	2593673	2598029	2593979	2597877	-	Cre09.g390450.t1.2	Cre09.g390450.t1.2		2597449,2596542,2595965,2595413,2595051,2594465,2593673	2598029,2597064,2596281,2595767,2595314,2594836,2594180	
chr9	3647778	3652222	3648387	3652170	-	CGL66	Cre09.g390467.t1.1		3651991,3651436,3651140,3650880,3650543,3650160,3649660,3649251,3648787,3647778	3652222,3651620,3651315,3650999,3650629,3650327,3649914,3649456,3649069,3648537	
chr9	2589680	2593631	2589914	2592802	+	Cre09.g390500.t1.2	Cre09.g390500.t1.2		2589680,2592406	2592086,2593631	
chr9	3652838	3654333	3653438	3654303	-	Cre09.g390504.t1.1	Cre09.g390504.t1.1		3652838	3654333	
chr9	3654748	3658223	3655443	3658081	-	Cre09.g390541.t1.1	Cre09.g390541.t1.1		3657841,3657465,3657226,3656491,3654748	3658223,3657631,3657334,3657039,3656289	
chr9	2585332	2589623	2585794	2589414	+	Cre09.g390550.t1.1	Cre09.g390550.t1.1		2585332,2585690,2585930,2586493,2588509,2589170	2585397,2585799,2586005,2586582,2588630,2589623	
chr9	2585332	2589623	2586543	2589414	+	Cre09.g390550.t2.1	Cre09.g390550.t2.1		2585332,2585690,2586493,2588509,2589170	2585397,2585777,2586582,2588630,2589623	
chr9	3658278	3667693	3659070	3667189	-	FAP11	Cre09.g390578.t1.1		3666793,3666568,3666185,3665765,3665251,3664861,3664310,3663950,3663551,3663071,3662646,3662262,3661866,3661371,3661030,3660591,3660113,3658278	3667693,3666687,3666374,3665900,3665409,3665031,3664604,3664081,3663715,3663325,3662869,3662376,3662066,3661664,3661239,3660785,3660262,3659877	with Similarity to TRP Channels
chr9	2574890	2578771	2574923	2577531	+	Cre09.g390600.t1.1	Cre09.g390600.t1.1		2574890,2575187,2575572,2575814,2576205,2576607,2577378	2575007,2575258,2575601,2575864,2576294,2576732,2578771	
chr9	2579244	2580139	2579556	2580040	-	Cre09.g390603.t1.1	Cre09.g390603.t1.1		2579244	2580139	
chr9	2580284	2583971	2581220	2583906	-	Cre09.g390604.t1.1	Cre09.g390604.t1.1		2583831,2583538,2583220,2582861,2582493,2582011,2581509,2580284	2583971,2583664,2583286,2582951,2582585,2582130,2581631,2581265	May contain additional coding sequence PMID: 27175017; null-allele mutant was isolated (PMID 29743196)
chr9	3667844	3672182	3668044	3670561	+	FAP12	Cre09.g390615.t1.1		3667844,3668316,3668620,3668862,3669221,3669589	3668074,3668423,3668688,3668950,3669404,3672182	triacylglycerol lipase
chr9	3672028	3673723	3673340	3673620	-	Cre09.g390652.t1.1	Cre09.g390652.t1.1		3672028	3673723	
chr9	3672438	3673723	3673340	3673620	-	Cre09.g390652.t2.1	Cre09.g390652.t2.1		3672438	3673723	
chr9	3672438	3674033	3673340	3673620	-	Cre09.g390652.t3.1	Cre09.g390652.t3.1		3672438	3674033	
chr9	2571100	2572801	2571206	2572763	+	Cre09.g390678.t1.2	Cre09.g390678.t1.2		2571100,2571507,2572418,2572692,2572754	2571378,2571987,2572523,2572700,2572801	
chr9	3673854	3674718	3674116	3674375	+	Cre09.g390689.t1.1	Cre09.g390689.t1.1		3673854	3674718	
chr9	2560694	2570999	2560818	2570957	-	Cre09.g390700.t1.1	Cre09.g390700.t1.1		2570865,2570282,2568214,2567468,2567047,2566699,2566121,2565275,2564037,2563356,2562873,2562231,2561627,2561259,2560694	2570999,2570429,2569841,2567959,2567116,2566855,2566381,2565886,2565077,2563712,2562982,2562428,2561698,2561291,2561028	null-allele mutant was isolated (PMID 29743196)
chr9	3674742	3676630	3676063	3676262	-	Cre09.g390726.t1.1	Cre09.g390726.t1.1		3676537,3674742	3676630,3676277	
chr9	2552184	2560640	2552526	2560505	-	ELG24	Cre09.g390750.t1.1		2560445,2560152,2559639,2559047,2558561,2558191,2557828,2557275,2556870,2556460,2555744,2555283,2554744,2554352,2553972,2553485,2553027,2552184	2560640,2560277,2559785,2559272,2558700,2558297,2557915,2557528,2556974,2556560,2555964,2555375,2554892,2554459,2554012,2553561,2553172,2552818	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr9	3677136	3680273	3678028	3679968	-	FAP354	Cre09.g390763.t1.1		3679957,3679847,3679640,3679484,3679301,3679007,3678453,3677136	3680273,3679881,3679779,3679566,3679403,3679108,3678521,3678127	Similar to RAB2 in mammals
chr9	2549535	2551939	2549707	2551654	-	Cre09.g390800.t1.2	Cre09.g390800.t1.2		2551534,2551127,2550669,2550091,2549535	2551939,2551243,2550868,2550244,2549803	
chr9	3680426	3692303	3680872	3691785	-	Cre09.g390801.t1.1	Cre09.g390801.t1.1		3692142,3691461,3691027,3690696,3690194,3689675,3689251,3689051,3688681,3688314,3687853,3687551,3687226,3686858,3686507,3686240,3685881,3685527,3685076,3684720,3684362,3683868,3683336,3683038,3682730,3682497,3681856,3681395,3680426	3692303,3691849,3691080,3690744,3690341,3689780,3689380,3689094,3688779,3688400,3687932,3687643,3687313,3687010,3686569,3686339,3686023,3685648,3685154,3684867,3684539,3683975,3683447,3683088,3682789,3682568,3681971,3681594,3681165	
chr9	3692604	3697325	3693888	3694401	+	Cre09.g390838.t1.1	Cre09.g390838.t1.1		3692604,3692898,3693840,3694214	3692643,3693029,3694022,3697325	
chr9	2540420	2548905	2540536	2548511	+	Cre09.g390850.t1.1	Cre09.g390850.t1.1		2540420,2541442,2542219,2542743,2543574,2544045,2544404,2544712,2545049,2545578,2546064,2546605,2547483,2547964	2540758,2541600,2542362,2542839,2543691,2544159,2544468,2544796,2545152,2545665,2546153,2546729,2547599,2548905	
chr9	3697634	3699802	3698045	3699434	+	Cre09.g390875.t1.1	Cre09.g390875.t1.1		3697634,3698367,3698652,3698954	3698271,3698419,3698711,3699802	
chr9	2533954	2540279	2535056	2539972	-	Cre09.g390900.t1.1	Cre09.g390900.t1.1		2539753,2539230,2538848,2537411,2533954	2540279,2539373,2539090,2538568,2537276	
chr9	3699852	3708133	3700707	3707966	-	Cre09.g390912.t1.1	Cre09.g390912.t1.1		3707874,3707630,3707325,3706992,3706503,3706187,3705759,3704778,3704410,3703869,3702456,3701323,3701042,3699852	3708133,3707757,3707489,3707155,3706752,3706369,3706012,3705591,3704652,3704250,3703705,3702295,3701135,3700788	
chr9	3708231	3710074	3708365	3709400	+	FAP140	Cre09.g390949.t1.1		3708231,3708850,3709206	3708458,3709078,3710074	
chr9	2523560	2533951	2524411	2531543	+	Cre09.g390957.t1.2	Cre09.g390957.t1.2		2523560,2524361,2526067,2526489,2526999,2528438,2529276	2523920,2524498,2526111,2526600,2527986,2528832,2533951	
chr9	3710284	3718653	3710509	3717165	+	Cre09.g390986.t1.1	Cre09.g390986.t1.1		3710284,3711206,3711662,3712363,3712728,3713133,3713479,3713979,3714496,3714825,3715153,3715528,3715874,3716279,3716599,3717088	3710773,3711340,3711795,3712518,3712835,3713187,3713547,3714121,3714620,3714949,3715251,3715602,3715978,3716342,3716784,3718653	
chr9	2516077	2523273	2516280	2522217	+	Cre09.g391000.t1.1	Cre09.g391000.t1.1		2516077,2516779,2517168,2517424,2517977,2518742,2519326,2520022,2520397,2521074,2521332,2521691,2522069	2516586,2516879,2517209,2517553,2518161,2518834,2519384,2520095,2520488,2521166,2521386,2521812,2523273	
chr9	3720064	3722435	3720341	3721290	+	Cre09.g391023.t1.1	Cre09.g391023.t1.1		3720064	3722435	
chr9	2497272	2515436	2497406	2514550	+	CYA9	Cre09.g391050.t1.1		2497272,2497742,2497970,2498215,2498446,2498836,2499229,2499569,2499892,2500217,2500521,2500960,2501347,2501692,2502196,2503063,2503484,2503836,2504335,2507309,2510501,2510698,2511027	2497557,2497837,2498075,2498290,2498664,2499070,2499401,2499733,2500060,2500338,2500724,2501153,2501543,2502100,2502517,2503340,2503717,2504229,2507188,2510367,2510569,2510867,2515436	possible guanylate or adenylate cyclase
chr9	3722657	3724152	3723575	3724055	-	Cre09.g391060.t1.1	Cre09.g391060.t1.1		3723667,3722657	3724152,3723586	
chr9	3724563	3727803	3724696	3727752	+	RPL24	Cre09.g391097.t1.1		3724563,3724800,3725357,3726481,3727650	3724705,3724859,3725554,3726633,3727803	Component of cytosolic 80S ribosome and 60S large subunit
chr9	3724593	3727802	3725359	3727752	+	RPL24	Cre09.g391097.t2.1		3724593,3725357,3726481,3727650	3724859,3725554,3726633,3727802	Component of cytosolic 80S ribosome and 60S large subunit
chr9	2483282	2488153	2483310	2487383	+	Cre09.g391100.t1.2	Cre09.g391100.t1.2		2483282,2483516,2484034,2484208,2484581,2484966,2485370,2485877,2486250,2486542,2487149	2483429,2483676,2484065,2484407,2484662,2485040,2485468,2485964,2486407,2486847,2488153	
chr9	3728463	3732104	3729077	3731762	+	Cre09.g391134.t1.1	Cre09.g391134.t1.1		3728463,3729073,3729324	3728716,3729171,3732104	
chr9	2478042	2482696	2478628	2481509	+	Cre09.g391150.t1.1	Cre09.g391150.t1.1		2478042,2478605,2478713,2479106,2479526,2479941,2480212,2480596,2480992,2481420	2478319,2478634,2478874,2479419,2479769,2480048,2480460,2480826,2481289,2482696	ts-lethal mutation block at S/M (PMID 29743196)
chr9	3732107	3736352	3733127	3735955	-	Cre09.g391171.t1.1	Cre09.g391171.t1.1		3736175,3735871,3735446,3735075,3734678,3734232,3732107	3736352,3735973,3735621,3735168,3734767,3734376,3733984	
chr9	3736453	3738170	3736470	3737190	+	PSRP4	Cre09.g391208.t1.1		3736453,3737007	3736698,3738170	Plastid-specific ribosomal protein 4, imported to chloroplast; Chloroplast ribosomal protein Plastid-Specific Ribosomal Protein 4; Chloroplast small ribosomal subunit protein Plastid-Specific Ribosomal Protein 4. This is a different protein from plastid r
chr9	3739567	3746012	3740966	3745981	-	ATG1	Cre09.g391245.t1.1		3745735,3745391,3744970,3744550,3744219,3743922,3742477,3741408,3739567	3746012,3745430,3745088,3744649,3744358,3744013,3743667,3742356,3741260	Protein serine/threonine kinase; required for vesicle formation in autophagy; structurally required for phagophore assembly site formation; during autophagy forms a complex with Atg13 and Atg17
chr9	3746147	3750916	3746793	3750630	-	XYT1	Cre09.g391282.t1.1		3750435,3750009,3749639,3749190,3748720,3748224,3747759,3747067,3746147	3750916,3750082,3749708,3749408,3748922,3748407,3747935,3747285,3746874	involved in N-glycosylation
chr9	3751053	3756934	3751311	3756609	+	Cre09.g391319.t1.1	Cre09.g391319.t1.1		3751053,3752393,3752763,3753266,3753744,3754742,3755093,3755395,3755658	3752325,3752452,3753020,3753484,3754379,3754804,3755172,3755518,3756934	
chr9	2454852	2457620	2454999	2457083	+	Cre09.g391350.t1.2	Cre09.g391350.t1.2		2454852,2455437,2455760,2456335,2456720	2455268,2455617,2456276,2456528,2457620	
chr9	2454852	2459903	2454999	2457083	+	Cre09.g391350.t2.1	Cre09.g391350.t2.1		2454852,2455437,2455760,2456335,2456720	2455268,2455617,2456276,2456528,2459903	
chr9	2459905	2464611	2460463	2463848	-	Cre09.g391352.t1.1	Cre09.g391352.t1.1		2463702,2463341,2461347,2461011,2459905	2464611,2463521,2463198,2461204,2460826	
chr9	2472046	2477751	2473313	2477352	-	Cre09.g391353.t1.1	Cre09.g391353.t1.1		2477170,2476655,2476371,2475861,2472046	2477751,2476663,2476451,2476051,2475712	
chr9	3768547	3776562	3771104	3776446	-	Cre09.g391356.t1.1	Cre09.g391356.t1.1		3776434,3776263,3773771,3773565,3772520,3768547	3776562,3776301,3776035,3773612,3772911,3772383	
chr9	3768547	3776712	3771104	3776266	-	Cre09.g391356.t2.1	Cre09.g391356.t2.1		3776697,3776263,3773771,3773565,3772520,3768547	3776712,3776301,3776035,3773612,3772911,3772383	
chr9	2444472	2451993	2444925	2451151	+	Cre09.g391370.t1.2	Cre09.g391370.t1.2		2444472,2444793	2444642,2451993	
chr9	3776767	3781802	3777644	3781693	-	Cre09.g391393.t1.1	Cre09.g391393.t1.1		3781532,3781289,3780420,3779560,3779234,3776767	3781802,3781369,3781076,3780306,3779518,3777644	
chr9	2438002	2444379	2438215	2442966	+	Cre09.g391400.t1.1	Cre09.g391400.t1.1		2438002,2442691,2442891	2442623,2442767,2444379	
chr9	3782473	3784184	3782612	3783805	+	Cre09.g391430.t1.1	Cre09.g391430.t1.1		3782473,3783230	3782787,3784184	
chr9	2433372	2436978	2433648	2436553	+	HCP1	Cre09.g391450.t1.2		2433372,2434081,2434713,2435492,2435832,2436263	2433854,2434513,2435315,2435632,2436093,2436978	Prismane/CO dehydrogenase family
chr9	3784234	3786724	3784408	3785997	+	Cre09.g391467.t1.1	Cre09.g391467.t1.1		3784234,3785190,3785673,3785997	3784945,3785521,3785754,3786724	
chr9	2422172	2432813	2422312	2431704	+	ATG9	Cre09.g391500.t1.1		2422172,2422696,2423565,2424393,2424888,2425682,2426153,2426489,2426675,2427110,2427569,2427874,2428290	2422377,2423172,2423985,2424512,2425455,2425874,2426245,2426567,2426721,2427230,2427677,2428013,2432813	Transmembrane protein involved in forming autophagic vesicles; cycles between the phagophore assembly site (PAS) and other cytosolic punctate structures, not found in autophagosomes; may be involved in membrane delivery to the PAS
chr9	3786773	3790138	3787012	3787181	+	Cre09.g391504.t1.1	Cre09.g391504.t1.1		3786773	3790138	
chr9	3792640	3797642	3793787	3797396	-	Cre09.g391541.t1.1	Cre09.g391541.t1.1		3797266,3797082,3795208,3794915,3794538,3794237,3792640	3797642,3797182,3796713,3795028,3794693,3794311,3793955	
chr9	2420562	2422003	2421322	2421745	+	Cre09.g391550.t1.2	Cre09.g391550.t1.2		2420562,2421588	2421372,2422003	
chr9	3798623	3805147	3798902	3804618	+	Cre09.g391578.t1.1	Cre09.g391578.t1.1		3798623,3798895,3799372,3801896,3803101,3803438	3798775,3799205,3801734,3802830,3803203,3805147	
chr9	2406356	2420461	2407394	2420193	-	MEP1	Cre09.g391600.t1.1		2410008,2409428,2408815,2406356	2420461,2409739,2408919,2408618	null-allele mutant was isolated (PMID 29743196)
chr9	3805277	3807912	3805921	3807312	-	Cre09.g391615.t1.1	Cre09.g391615.t1.1		3807227,3806774,3805277	3807912,3806968,3806526	
chr9	2402530	2406301	2403248	2406158	-	HCP4	Cre09.g391650.t1.2		2405946,2405281,2404489,2404164,2403703,2402530	2406301,2405713,2405091,2404304,2403964,2403538	Prismane/CO dehydrogenase family
chr9	3808102	3816232	3808290	3815977	-	Cre09.g391652.t1.1	Cre09.g391652.t1.1		3815853,3815366,3814761,3814341,3813939,3813684,3813191,3812409,3811971,3811522,3811129,3810472,3810057,3809644,3809071,3808102	3816232,3815439,3815065,3814395,3814073,3813783,3813397,3812890,3812081,3811659,3811226,3810739,3810181,3809749,3809425,3808742	
chr9	3816575	3819644	3818646	3819194	+	Cre09.g391689.t1.1	Cre09.g391689.t1.1		3816575,3818539,3819194	3817236,3819002,3819644	
chr9	2396902	2402102	2397450	2400326	+	Cre09.g391700.t1.2	Cre09.g391700.t1.2		2396902,2397304,2398232,2398618,2399530,2399983	2397142,2398029,2398321,2399319,2399822,2402102	
chr9	3819689	3822327	3820385	3822182	-	Cre09.g391726.t1.1	Cre09.g391726.t1.1		3822148,3821656,3821227,3820902,3819689	3822327,3821711,3821455,3820993,3820604	
chr9	2390112	2396538	2390470	2393765	+	Cre09.g391753.t1.2	Cre09.g391753.t1.2		2390112,2390700,2390952	2390593,2390778,2396538	
chr9	3826423	3827294	3826555	3826989	+	Cre09.g391763.t1.1	Cre09.g391763.t1.1		3826423,3826705	3826610,3827294	
chr9	3827440	3832874	3827685	3832010	+	VSP4	Cre09.g391801.t1.1		3827440,3828055,3828196,3828648,3829034,3829240,3829822,3830230	3827745,3828109,3828308,3828855,3829101,3829662,3830015,3832874	Hydroxyproline rich glycoprotein VSP4; (SP)n-repeats, extracellular matrix protein (cell wall protein); resembles VSP6 [PMID: 7689882, Genbank entry AY036106]
chr9	3832877	3836782	3833516	3836367	-	Cre09.g391838.t1.1	Cre09.g391838.t1.1		3836648,3836246,3835984,3835709,3835378,3834990,3834658,3834454,3833783,3832877	3836782,3836385,3836069,3835729,3835478,3835176,3834874,3834529,3834185,3833615	
chr9	3837433	3845564	3837716	3844743	+	Cre09.g391875.t1.1	Cre09.g391875.t1.1		3837433,3839575,3842277,3843372,3843998,3844614	3839309,3839670,3843175,3843622,3844269,3845564	
chr9	3841623	3845564	3842067	3844743	+	Cre09.g391875.t2.1	Cre09.g391875.t2.1		3841623,3842277,3843372,3843998,3844614	3842130,3843175,3843622,3844269,3845564	
chr9	2372812	2374206	2372906	2373720	+	TRXh2	Cre09.g391900.t1.1		2372812,2373080,2373233,2373585	2372987,2373103,2373334,2374206	This protein was previously named Ch1 [PMID: 2439, PMID: 2191628, PMID: 11538123, PMID: 7632918]. mRNA level regulated by light, circadian clock and heavy metals [PMID: 11898433; PMID: 1436225, PMID: 1398712, PMID: 11538123
chr9	2374262	2380243	2374515	2379862	+	Cre09.g391901.t1.1	Cre09.g391901.t1.1		2374262,2374619,2375188	2374550,2374790,2380243	
chr9	3846213	3853486	3847153	3852575	+	Cre09.g391912.t1.1	Cre09.g391912.t1.1		3846213,3846949,3847098,3847815,3848025,3848245	3846882,3846982,3847177,3847822,3848039,3853486	
chr9	3858613	3864236	3858696	3863425	+	Cre09.g391949.t1.1	Cre09.g391949.t1.1		3858613,3858897,3859031,3860144,3860760,3861017,3861474,3861808,3862213,3862617,3862965,3863278	3858822,3858946,3859299,3860332,3860825,3861225,3861622,3861916,3862371,3862667,3863060,3864236	
chr9	3864283	3870764	3864433	3868385	+	Cre09.g391986.t1.1	Cre09.g391986.t1.1		3864283,3864710,3864980,3865441,3865843,3866192,3866525,3867012,3867287,3867723,3868199	3864506,3864792,3865137,3865696,3866010,3866353,3866754,3867097,3867462,3867818,3870764	
chr9	2355931	2371562	2356086	2370838	+	Cre09.g392000.t1.1	Cre09.g392000.t1.1		2355931,2356443,2357204,2357528,2357774,2358109,2358886,2359360,2359748,2360073,2360543,2360934,2361370,2361964,2362669,2363011,2363541,2364024,2364302,2364706,2365505,2365870,2366624,2367074,2367697,2368271,2368770,2369172,2369732,2370048,2370717	2356239,2356655,2357283,2357617,2357901,2358227,2358942,2359444,2359835,2360121,2360637,2361075,2361493,2362132,2362726,2363154,2363686,2364084,2364389,2365004,2365537,2366062,2366688,2367370,2367800,2368414,2368866,2369267,2369815,2370154,2371562	
chr9	2355931	2371562	2356086	2370838	+	Cre09.g392000.t2.1	Cre09.g392000.t2.1		2355931,2356443,2357204,2357528,2357774,2358109,2358886,2359360,2359748,2360073,2360543,2360934,2361370,2361964,2362669,2363011,2363541,2364024,2364302,2364706,2365505,2365870,2366624,2367074,2367697,2368271,2369172,2369732,2370048,2370717	2356239,2356655,2357283,2357617,2357901,2358227,2358942,2359444,2359835,2360121,2360637,2361075,2361493,2362132,2362726,2363154,2363686,2364084,2364389,2365004,2365537,2366062,2366688,2367370,2367800,2368367,2369267,2369815,2370154,2371562	
chr9	3870873	3876539	3871188	3874457	+	CSV2	Cre09.g392023.t1.1		3870873,3871710,3872357	3871258,3872182,3876539	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr9	2351230	2355750	2352607	2355329	-	Cre09.g392050.t1.1	Cre09.g392050.t1.1		2355218,2354865,2354619,2354232,2353871,2353053,2351230	2355750,2354963,2354692,2354484,2353963,2353526,2352706	
chr9	2351230	2355750	2352607	2355329	-	Cre09.g392050.t2.1	Cre09.g392050.t2.1		2355218,2354865,2354619,2354232,2353871,2353053,2351230	2355750,2354963,2354692,2354481,2353963,2353526,2352706	
chr9	3877781	3885142	3878231	3883836	+	ZIP4	Cre09.g392060.t1.1		3877781,3878205,3878655,3879113,3879853,3880277,3880617,3880811,3881220,3881602,3883325,3883713	3878080,3878313,3878767,3879368,3880015,3880397,3880643,3880882,3881294,3881649,3883381,3885142	Related to bacterial zupT homologs; appears as CrZIP11 in PMID: 15710683; PMID: 16766055
chr9	3877781	3885142	3878231	3883836	+	ZIP4	Cre09.g392060.t2.1		3877781,3878205,3878655,3879119,3879853,3880277,3880617,3880811,3881220,3881602,3883325,3883713	3878080,3878313,3878767,3879368,3880015,3880397,3880643,3880882,3881294,3881649,3883381,3885142	Related to bacterial zupT homologs; appears as CrZIP11 in PMID: 15710683; PMID: 16766055
chr9	3885295	3887290	3885738	3886999	-	Cre09.g392097.t1.1	Cre09.g392097.t1.1		3886846,3886361,3885295	3887290,3886603,3886035	
chr9	2344795	2347830	2347510	2347745	-	Cre09.g392105.t1.2	Cre09.g392105.t1.2		2344795	2347830	
chr9	2347931	2350071	2348283	2349148	+	Cre09.g392106.t1.1	Cre09.g392106.t1.1		2347931,2348664,2348959	2348577,2348720,2350071	
chr9	3887481	3892196	3887589	3891867	+	Cre09.g392134.t1.1	Cre09.g392134.t1.1		3887481,3888058,3888433,3888672,3888953,3889480,3889912,3890260,3890593,3891011,3891396,3891756	3887850,3888133,3888474,3888706,3889121,3889609,3890038,3890334,3890685,3891118,3891461,3892196	
chr9	3892251	3896472	3892444	3896133	+	Cre09.g392171.t1.1	Cre09.g392171.t1.1		3892251,3893714,3894331,3894879,3895545	3893475,3894086,3894699,3895139,3896472	
chr9	3896482	3904670	3898817	3904531	-	Cre09.g392208.t1.1	Cre09.g392208.t1.1		3904400,3903819,3903426,3902005,3901482,3900711,3899658,3899255,3896482	3904670,3903915,3903617,3903230,3901839,3901328,3900582,3899397,3899015	
chr9	3904755	3906560	3905792	3906402	-	DPM3	Cre09.g392245.t1.1		3906294,3906004,3904755	3906560,3906111,3905846	
chr9	2303201	2308877	2303725	2307801	+	OTU5	Cre09.g392250.t1.1		2303201,2304178,2305098,2305772,2306110,2306495,2307079,2307326	2303883,2304761,2305291,2305834,2306226,2306578,2307143,2308877	Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr9	2308925	2312620	2309630	2312218	-	Cre09.g392251.t1.1	Cre09.g392251.t1.1		2311592,2311199,2310488,2310096,2308925	2312620,2311401,2310650,2310298,2309716	
chr9	2313297	2317608	2314462	2317597	-	Cre09.g392252.t1.1	Cre09.g392252.t1.1		2317570,2316963,2316556,2315895,2313297	2317608,2317135,2316735,2316138,2315554	
chr9	3906671	3926612	3906774	3925845	+	DHC2	Cre09.g392282.t1.1		3906671,3906937,3907133,3907517,3907833,3908191,3908490,3908717,3909294,3909940,3910324,3910682,3911018,3911533,3911897,3912265,3912601,3912942,3913315,3913791,3914360,3914605,3914947,3915957,3917287,3918188,3918535,3918894,3920318,3921311,3922180,3922821,3923296,3923706,3924581,3925554	3906826,3907052,3907242,3907668,3908041,3908340,3908570,3909160,3909753,3910123,3910507,3910810,3911326,3911733,3912127,3912447,3912749,3913179,3913642,3914131,3914451,3914815,3915770,3917130,3917956,3918341,3918660,3920103,3920860,3921835,3922508,3923137,3923589,3924373,3925399,3926612	Flagellar inner arm dynein heavy chain, dynein d (monomeric).  Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]
chr9	2299208	2303100	2300328	2303009	-	Cre09.g392300.t1.1	Cre09.g392300.t1.1		2302840,2302535,2301876,2301250,2300804,2299208	2303100,2302670,2302233,2301666,2300954,2300555	Related to GCN5
chr9	3926996	3933142	3927035	3931639	+	VSP6	Cre09.g392319.t1.1		3926996,3927345,3927733,3927906,3928210,3928551,3929313,3929607,3930917,3931154,3931589	3927098,3927539,3927795,3928018,3928306,3929149,3929450,3930771,3930994,3931448,3933142	Hydroxyproline rich glycoprotein Vsp6; (SP)n-repeats, extracellular matrix protein (cell wall protein); resembles VSP4 [PMID: 7689882, Genbank AF382191]
chr9	2295674	2298530	2296922	2298401	-	CGLD37	Cre09.g392350.t1.2		2298379,2298170,2297918,2297750,2297418,2297149,2295674	2298530,2298237,2298039,2297796,2297513,2297244,2296984	Conserved in the Green Lineage and Diatoms
chr9	2295674	2298530	2296922	2298401	-	CGLD37	Cre09.g392350.t2.1		2298379,2298170,2297918,2297750,2297418,2297164,2295674	2298530,2298237,2298039,2297796,2297513,2297244,2296984	Conserved in the Green Lineage and Diatoms
chr9	3933155	3936600	3933715	3936117	-	Cre09.g392356.t1.1	Cre09.g392356.t1.1		3936388,3935436,3935030,3933155	3936600,3936175,3935170,3934819	
chr9	3937408	3941220	3937902	3940237	-	Cre09.g392393.t1.1	Cre09.g392393.t1.1		3940441,3939583,3939312,3937408	3941220,3940294,3939383,3939081	
chr9	2290801	2293712	2290909	2293339	+	SEC24C	Cre09.g392400.t1.1		2290801,2291003,2291716,2292320,2293209	2290961,2291462,2292084,2292415,2293712	Hypothetical Conserved Protein. Similar to SEC24 component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex.
chr9	3942021	3946523	3942738	3945314	+	Cre09.g392430.t1.1	Cre09.g392430.t1.1		3942021,3943115,3943503,3943847,3944406,3944824,3945182	3942892,3943248,3943624,3943928,3944593,3944980,3946523	
chr9	3946525	3947710	3947272	3947563	-	ATX1	Cre09.g392467.t1.1		3947507,3946525	3947710,3947429	
chr9	2271340	2277600	2272567	2277348	-	Cre09.g392500.t1.2	Cre09.g392500.t1.2		2277318,2276588,2276102,2275238,2274851,2274193,2273748,2272981,2271340	2277600,2276741,2276274,2275285,2274923,2274330,2273821,2273185,2272695	
chr9	2277741	2279057	2278208	2279044	+	Cre09.g392503.t1.1	Cre09.g392503.t1.1		2277741,2278531,2279037	2278248,2278669,2279057	
chr9	2289273	2290745	2289302	2290142	+	SEC24C	Cre09.g392504.t1.1		2289273,2289491,2289902	2289377,2289601,2290745	May contain additional coding sequence PMID: 27175017
chr9	3947811	3954082	3948331	3953842	+	Cre09.g392505.t1.1	Cre09.g392505.t1.1		3947811,3948148,3948309,3948741,3948981,3949194,3949424,3951439,3951710,3952032,3952741,3953117,3953320	3948073,3948181,3948550,3948814,3949020,3949227,3951267,3951488,3951842,3952595,3952901,3953198,3954082	null-allele passenger mutation was isolated (PMID 29743196)
chr9	3954091	3962710	3954818	3962661	-	Cre09.g392542.t1.1	Cre09.g392542.t1.1		3962431,3962240,3961875,3961301,3961065,3960640,3960382,3960169,3959860,3959172,3955964,3955665,3954091	3962710,3962339,3962081,3961372,3961143,3960758,3960495,3960273,3960032,3959671,3959044,3955831,3955484	
chr9	3962851	3966022	3962948	3965456	+	OPR10	Cre09.g392579.t1.1		3962851,3963060,3963228,3963388,3965276	3962979,3963114,3963300,3965115,3966022	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr9	3966041	3968313	3966354	3968272	-	Cre09.g392616.t1.1	Cre09.g392616.t1.1		3968140,3967904,3967623,3967421,3966919,3966651,3966041	3968313,3968026,3967727,3967480,3967251,3966714,3966434	
chr9	2253471	2259052	2253589	2258668	+	MOT39	Cre09.g392650.t1.2		2253471,2253826,2254317,2254865,2255302,2255739,2256046,2256465,2256728,2257019,2257608,2258327,2258590	2253646,2253900,2254424,2254918,2255363,2255834,2256160,2256503,2256787,2257220,2257949,2258385,2259052	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr9	2259305	2264740	2260724	2264294	-	Cre09.g392652.t1.1	Cre09.g392652.t1.1		2264060,2263058,2262275,2261821,2259305	2264740,2263883,2262888,2261988,2261441	
chr9	2265031	2268146	2265770	2267625	+	Cre09.g392653.t2.1	Cre09.g392653.t2.1		2265031,2266053,2266421,2266699,2267487	2265921,2266180,2266519,2266926,2268146	
chr9	2264861	2266002	2265293	2265972	+	Cre09.g392653.t1.1	Cre09.g392653.t1.1		2264861,2265778	2265459,2266002	
chr9	2268321	2271322	2268533	2271048	+	Cre09.g392654.t1.1	Cre09.g392654.t1.1		2268321,2268828,2269091,2269354,2269546,2269868,2270224,2270602	2268628,2268921,2269181,2269385,2269606,2269914,2270353,2271322	
chr9	3968451	3979706	3968694	3979303	+	Cre09.g392655.t1.1	Cre09.g392655.t1.1		3968451,3969014,3969389,3969851,3970338,3971212,3971574,3971901,3972137,3972335,3972554,3972821,3973001,3973186,3975232,3975586,3976100,3977142,3977318,3977554,3978172,3978435,3978654,3979008	3968863,3969090,3969674,3970176,3971075,3971364,3971755,3972012,3972235,3972490,3972580,3972916,3973098,3975124,3975465,3975978,3976627,3977198,3977434,3977619,3978315,3978542,3978772,3979706	
chr9	3981454	3983250	3981788	3983131	-	MAGOH	Cre09.g392692.t1.1		3983038,3982904,3982694,3981454	3983250,3982953,3982754,3982031	null-allele mutant was isolated (PMID 29743196)
chr9	2249249	2253370	2249899	2253136	-	CGL39	Cre09.g392700.t1.2		2252989,2252342,2251884,2251342,2251009,2250560,2249249	2253370,2252498,2252095,2251635,2251071,2250628,2250103	
chr9	2249419	2253370	2249899	2253136	-	CGL39	Cre09.g392700.t2.1		2252989,2252342,2251884,2251342,2251009,2250560,2249419	2253370,2252498,2252095,2251635,2251071,2250628,2250103	
chr9	3983561	3988182	3983708	3987310	+	Cre09.g392729.t1.1	Cre09.g392729.t1.1		3983561,3984220,3984467,3985146,3985419,3985853,3986363,3986675,3987091	3984002,3984282,3984898,3985282,3985536,3986017,3986486,3986964,3988182	
chr9	2242024	2248484	2243959	2248169	-	Cre09.g392750.t1.2	Cre09.g392750.t1.2		2248097,2247917,2247766,2247276,2246895,2246495,2245936,2245630,2245336,2244422,2242024	2248484,2248024,2247792,2247329,2247092,2246587,2246077,2245702,2245423,2244640,2244052	
chr9	3988795	3993010	3989317	3992900	-	Cre09.g392766.t1.1	Cre09.g392766.t1.1		3992784,3992578,3992349,3991941,3991634,3991328,3990962,3990808,3990472,3989974,3989700,3988795	3993010,3992672,3992390,3992027,3991839,3991523,3991164,3990830,3990671,3990264,3989808,3989540	
chr9	3988795	3993010	3989317	3991482	-	Cre09.g392766.t2.1	Cre09.g392766.t2.1		3992784,3992578,3992349,3991634,3991328,3990962,3990808,3990472,3989974,3989700,3988795	3993010,3992672,3992390,3991836,3991523,3991164,3990830,3990671,3990264,3989808,3989540	
chr9	3988795	3993010	3989317	3991482	-	Cre09.g392766.t3.1	Cre09.g392766.t3.1		3992784,3992578,3992349,3991634,3991328,3990962,3990808,3990472,3989974,3989700,3988795	3993010,3992672,3992390,3991839,3991523,3991164,3990830,3990671,3990264,3989808,3989540	
chr9	3988795	3993010	3989317	3991482	-	Cre09.g392766.t4.1	Cre09.g392766.t4.1		3992784,3992578,3992349,3991634,3991328,3990962,3990808,3990472,3989974,3989700,3988795	3993010,3992672,3992390,3992027,3991523,3991164,3990830,3990671,3990264,3989808,3989540	
chr9	2237201	2242022	2237372	2241540	+	Cre09.g392800.t1.1	Cre09.g392800.t1.1		2237201,2237580,2238167,2238580,2238896,2239734	2237446,2237778,2238256,2238677,2239517,2242022	
chr9	3993141	3994412	3993279	3993779	+	Cre09.g392803.t1.1	Cre09.g392803.t1.1		3993141,3993644	3993405,3994412	
chr9	3999911	4000733	4000225	4000469	+	Cre09.g392840.t1.1	Cre09.g392840.t1.1		3999911	4000733	
chr9	4000071	4000733	4000225	4000469	+	Cre09.g392840.t2.1	Cre09.g392840.t2.1		4000071	4000733	
chr9	2224845	2237050	2224942	2236800	-	Cre09.g392850.t1.1	Cre09.g392850.t1.1		2234397,2232806,2232226,2230191,2229908,2229625,2229198,2228886,2228582,2227878,2227479,2224845	2237050,2234266,2232666,2232062,2229985,2229732,2229422,2228981,2228646,2228376,2227709,2227252	
chr9	276607	291842	277046	291107	-	FMG2	Cre09.g392867.t1.1		290950,289906,287920,287463,283318,282139,280941,278260,276607	291842,290853,289794,287804,287328,283215,282038,280831,278136	Flagella membrane protein, major form;  highly expressed in Chlamydomonas during vegetative growth (and likely even in gametes)
chr9	4005336	4008170	4007390	4007559	-	Cre09.g392877.t1.1	Cre09.g392877.t1.1		4005336	4008170	
chr9	2209431	2224762	2209684	2224516	+	Cre09.g392900.t1.1	Cre09.g392900.t1.1		2209431,2210695,2211090,2211369,2211712,2211993,2212790,2213240,2213476,2214018,2214573,2215560,2216224,2216712,2217106,2217442,2217780,2218242,2218760,2219432,2220117,2220591,2221114,2221452,2222757	2210440,2210904,2211218,2211557,2211855,2212473,2212941,2213292,2213740,2214365,2215310,2215795,2216371,2216810,2217219,2217527,2217899,2218482,2219052,2219883,2220300,2220744,2221310,2222507,2224762	null-allele mutant was isolated (PMID 29743196)
chr9	4008830	4010295	4008988	4009816	-	Cre09.g392914.t1.1	Cre09.g392914.t1.1		4009809,4009266,4008830	4010295,4009563,4009118	
chr9	4008830	4009585	4008988	4009556	-	Cre09.g392914.t2.1	Cre09.g392914.t2.1		4009266,4008830	4009585,4009118	
chr9	2205955	2209330	2206779	2209281	-	Cre09.g392950.t1.2	Cre09.g392950.t1.2		2209094,2208775,2208416,2208014,2207707,2207197,2205955	2209330,2208899,2208508,2208123,2207853,2207347,2206881	
chr9	4009730	4011255	4010695	4011224	-	Cre09.g392951.t1.1	Cre09.g392951.t1.1		4011078,4010812,4009730	4011255,4010919,4010695	
chr9	4016826	4019325	4017103	4019234	-	Cre09.g392988.t1.1	Cre09.g392988.t1.1		4018979,4017437,4016826	4019325,4018483,4017310	
chr9	2200445	2205860	2201933	2205719	-	CSR6	Cre09.g393000.t1.1		2205695,2205069,2204890,2204479,2204199,2203816,2203562,2203311,2202937,2202677,2202371,2200445	2205860,2205137,2204922,2204591,2204247,2203905,2203594,2203461,2203004,2202814,2202502,2202005	
chr9	4020459	4022685	4021121	4022244	-	Cre09.g393025.t1.1	Cre09.g393025.t1.1		4022209,4021474,4021223,4020459	4022685,4021948,4021392,4021125	
chr9	2191895	2200090	2192109	2199971	-	Cre09.g393050.t1.2	Cre09.g393050.t1.2		2199899,2199539,2199084,2198704,2197888,2197550,2197093,2196455,2195000,2194564,2193589,2192922,2191895	2200090,2199634,2199152,2198790,2198457,2197648,2197182,2196709,2195464,2194663,2193965,2193257,2192718	
chr9	4023979	4032535	4026089	4032443	-	Cre09.g393062.t1.1	Cre09.g393062.t1.1		4032089,4031725,4031123,4028118,4027272,4026820,4023979	4032535,4031829,4031371,4031000,4027889,4027061,4026627	null-allele mutant was isolated (PMID 29743196)
chr9	4032666	4034447	4033043	4033446	+	Cre09.g393099.t1.1	Cre09.g393099.t1.1		4032666,4033336	4033104,4034447	
chr9	4032666	4034447	4033043	4033653	+	Cre09.g393099.t2.1	Cre09.g393099.t2.1		4032666,4033336,4033653	4033104,4033571,4034447	
chr9	2185961	2191671	2186501	2190422	+	Cre09.g393100.t1.1	Cre09.g393100.t1.1		2185961,2186244,2186922,2187288,2188153,2188512,2188948,2190185	2186140,2186554,2186996,2187771,2188251,2188622,2189859,2191671	
chr9	4035656	4040150	4035980	4039683	+	Cre09.g393136.t1.1	Cre09.g393136.t1.1		4035656,4036837,4037217,4037578,4037997,4038321,4039533	4036664,4036935,4037330,4037634,4038087,4039321,4040150	
chr9	2173636	2185319	2175088	2184236	+	FOX1	Cre09.g393150.t1.2		2173636,2174968,2175648,2176077,2176338,2176681,2177030,2177329,2177708,2178079,2178486,2178895,2179254,2179669,2180062,2180453,2180734,2181050,2181508,2181925,2182334,2182676,2183029,2183429,2183719,2184074	2174407,2175391,2175725,2176148,2176442,2176797,2177131,2177418,2177832,2178172,2178582,2179054,2179365,2179788,2180223,2180579,2180834,2181229,2181661,2182099,2182508,2182862,2183201,2183533,2183871,2185319	(FLP1); iron-deficiency inducible; plasma membrane localized [PMID: 12481087]
chr9	4040225	4041798	4040725	4041764	-	ELI2	Cre09.g393173.t1.1		4041581,4040225	4041798,4041070	A homolog of ELIP (early light-inducible protein) gene which was originally identified as transiently expressed during the early phase of greening in etiolated pea seedlings [PMID: 6692824]. It has three TMH, whose sequences are closely related to LHC proteins
chr9	2164134	2173135	2164997	2172815	-	HSP70C	Cre09.g393200.t1.2		2172770,2172575,2172345,2171871,2171559,2170216,2169900,2169588,2168784,2168337,2168020,2167731,2167269,2166883,2166567,2166197,2165799,2165384,2164134	2173135,2172624,2172429,2171975,2171648,2170266,2170017,2169649,2168958,2168513,2168123,2167808,2167385,2167026,2166680,2166310,2165867,2165512,2165162	HSP70C is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; HSP70C is localized to mitochondria; it is inducible by heat shock and light; PMID: 2779571, 16143837
chr9	4041850	4043445	4042906	4043364	-	Cre09.g393210.t1.1	Cre09.g393210.t1.1		4043248,4042991,4041850	4043445,4043121,4042923	
chr9	4043566	4049277	4043641	4049256	+	Cre09.g393247.t1.1	Cre09.g393247.t1.1		4043566,4044527,4045366,4045713,4046093,4049242	4043744,4045029,4045465,4045856,4049092,4049277	
chr9	2159560	2164085	2160030	2163981	-	Cre09.g393250.t1.1	Cre09.g393250.t1.1		2163574,2163234,2162510,2162219,2161980,2161651,2161121,2160720,2160375,2159560	2164085,2163360,2162696,2162316,2162084,2161710,2161341,2160801,2160494,2160195	
chr9	4049280	4052565	4049315	4051956	-	RLS8	Cre09.g393284.t1.1		4050441,4049967,4049463,4049280	4052565,4050077,4049598,4049398	Member of a family of proteins related to Volvox carteri RegA, which is a putative transcription repressor (PMID: 9895312) containing a SAND domain (IPR000770 SAND; PF01342). See also: PMID: 16720695 and PMID: 16622701.
chr9	2153926	2159557	2154639	2159334	+	Cre09.g393300.t1.2	Cre09.g393300.t1.2		2153926,2154756,2154995,2155241,2155609,2155905,2156714,2157024,2157527,2158051,2158643,2159238	2154690,2154806,2155047,2155379,2155736,2156520,2156812,2157134,2157606,2158390,2158741,2159557	
chr9	4052630	4061745	4053481	4061593	-	CSR12	Cre09.g393321.t1.1		4061523,4061246,4060775,4060237,4059833,4059396,4059014,4058698,4058466,4058204,4057730,4057080,4054492,4054020,4052630	4061745,4061371,4060905,4060472,4059926,4059445,4059065,4058732,4058546,4058291,4057864,4057163,4054685,4054265,4053542	
chr9	2151386	2153511	2151534	2152540	+	Cre09.g393350.t1.2	Cre09.g393350.t1.2		2151386,2151767	2151541,2153511	
chr9	4061906	4065907	4062220	4064909	+	Cre09.g393358.t1.1	Cre09.g393358.t1.1		4061906,4062419,4062870,4063274,4063756,4064351,4064633	4062338,4062716,4062935,4063376,4063896,4064434,4065907	
chr9	4065992	4075785	4066623	4075634	-	Cre09.g393395.t1.1	Cre09.g393395.t1.1		4075236,4074964,4074143,4073865,4073348,4072911,4072139,4071691,4071251,4068118,4065992	4075785,4075045,4074724,4074018,4073448,4073008,4072542,4071965,4071532,4071091,4067894	
chr9	2145641	2151285	2146473	2151219	-	VTE4	Cre09.g393400.t1.2		2151054,2150491,2150082,2149791,2149458,2148818,2148192,2147890,2147383,2145641	2151285,2150578,2150155,2149817,2149553,2148877,2148280,2148080,2147443,2146639	gamma-tocopherol methyltransferase, chloroplast precursor (EC 2.1.1.95) (TMT)
chr9	4076200	4080165	4076606	4079767	-	Cre09.g393432.t1.1	Cre09.g393432.t1.1		4079439,4077039,4076200	4080165,4079248,4076804	
chr9	2137519	2145365	2138460	2145129	-	FAP233	Cre09.g393450.t1.1		2145074,2144643,2143926,2143313,2142806,2141457,2138847,2137519	2145365,2144797,2144309,2143816,2142927,2142491,2141031,2138583	Flagellar Associated Protein, found in the flagellar proteome; null-allele mutant was isolated (PMID 29743196)
chr9	4080345	4083175	4080550	4082599	+	Cre09.g393469.t1.1	Cre09.g393469.t1.1		4080345,4081897	4081735,4083175	
chr9	4083849	4088064	4083956	4087170	+	HCP3	Cre09.g393506.t1.1		4083849,4084409,4084642,4085183,4085502,4086181,4086422,4086880	4084180,4084455,4085024,4085332,4085954,4086321,4086683,4088064	Prismane/CO dehydrogenase family
chr9	4088070	4092385	4089192	4092247	-	HCP2	Cre09.g393543.t1.1		4092028,4091884,4091336,4091028,4090406,4090041,4089679,4088070	4092385,4091950,4091718,4091177,4090858,4090181,4089940,4089482	Prismane/CO dehydrogenase family
chr9	2124650	2128985	2124971	2128843	-	Cre09.g393550.t1.1	Cre09.g393550.t1.1		2128516,2128217,2127942,2127594,2127086,2126500,2126098,2125637,2125383,2124650	2128985,2128331,2127975,2127664,2127222,2126695,2126224,2125761,2125438,2125088	
chr9	2129106	2137517	2129220	2137048	+	Cre09.g393551.t1.1	Cre09.g393551.t1.1		2129106,2129484,2130063,2131044,2131469,2131767,2132260,2133284,2133633,2134125,2134646,2135085,2135514,2136035,2136486	2129312,2129782,2130727,2131127,2131540,2131914,2132399,2133422,2133768,2134304,2134856,2135164,2135631,2136156,2137517	May contain additional coding sequence in intronic N-island PMID: 27175017
chr9	4093476	4098387	4093688	4097231	+	Cre09.g393580.t1.1	Cre09.g393580.t1.1		4093476,4093962,4094592,4094865,4095057,4095714,4096023,4096396,4096731,4097180	4093808,4094383,4094628,4094876,4095385,4095844,4096228,4096473,4096889,4098387	
chr9	2121799	2124595	2122567	2124558	-	Cre09.g393600.t1.2	Cre09.g393600.t1.2		2124471,2124317,2124136,2123816,2123422,2123064,2121799	2124595,2124403,2124239,2123905,2123527,2123176,2122667	
chr9	4098436	4109467	4098713	4108608	+	Cre09.g393617.t1.1	Cre09.g393617.t1.1		4098436,4098699,4107414,4107684,4107936	4098547,4106987,4107572,4107788,4109467	
chr9	2111476	2121661	2111793	2119629	+	Cre09.g393650.t1.2	Cre09.g393650.t1.2		2111476,2112122,2112464,2112800,2113087,2113388,2113814,2114091,2114551,2114828,2115211,2115644,2116042,2116529,2116857,2117203,2117563,2117910,2118183,2118511,2118872,2119154,2119398	2111880,2112256,2112556,2112850,2113147,2113518,2113890,2114232,2114671,2114946,2115344,2115814,2116140,2116574,2116988,2117370,2117680,2117968,2118320,2118639,2119027,2119240,2121661	
chr9	4109535	4117955	4110724	4116394	-	Cre09.g393654.t1.1	Cre09.g393654.t1.1		4117242,4116539,4114804,4114552,4114164,4109535	4117955,4116735,4116484,4114584,4114259,4113817	
chr9	4118747	4126285	4119618	4126184	-	KDG4	Cre09.g393691.t1.1		4126011,4125895,4125521,4125298,4124972,4124384,4124004,4123507,4123081,4122730,4122481,4122047,4120537,4120177,4118747	4126285,4125929,4125582,4125385,4125036,4124538,4124136,4123599,4123187,4122850,4122548,4122183,4121913,4120345,4119802	Similarity to ceramide kinase [Mus musculus] and diacylglycerol kinase [Arabidopsis thaliana]
chr9	2105436	2110682	2105638	2109443	+	MMP3	Cre09.g393700.t1.1		2105436,2106153,2106609,2106958,2107234,2107739,2108060,2108470,2108746	2105729,2106412,2106821,2107053,2107575,2107893,2108114,2108504,2110682	Matrix Metalloprotease -like protein. Homology to MMP1 and MMP2
chr9	4126416	4131707	4126525	4131638	+	Cre09.g393728.t1.1	Cre09.g393728.t1.1		4126416,4127012,4127341,4127752,4128269,4128582,4128955,4129552,4129999,4130532,4130831,4131076,4131548	4126716,4127090,4127467,4127990,4128370,4128669,4129304,4129692,4130298,4130633,4130919,4131310,4131707	
chr9	2102386	2105348	2102416	2105231	+	Cre09.g393750.t1.1	Cre09.g393750.t1.1		2102386,2102671,2103179,2103704,2104796,2105231	2102533,2102784,2103520,2104585,2105050,2105348	
chr9	2103116	2105348	2103166	2105033	+	Cre09.g393750.t3.1	Cre09.g393750.t3.1		2103116,2103704,2104796	2103520,2104585,2105348	
chr9	2103116	2105348	2103166	2105231	+	Cre09.g393750.t4.1	Cre09.g393750.t4.1		2103116,2103704,2104796,2105231	2103520,2104585,2105050,2105348	
chr9	2102386	2103067	2102416	2103019	+	Cre09.g393750.t2.1	Cre09.g393750.t2.1		2102386,2102671,2102905	2102533,2102784,2103067	
chr9	4131710	4134695	4132880	4134616	-	LMR1	Cre09.g393765.t1.1		4134468,4134121,4133630,4131710	4134695,4134375,4133761,4132954	similar to Volvox carteri clone A chitinase [PMID: 9596636, Genbank entry AF058716]; contains two LysM-domains which are found in a variety of enzymes involved in bacterial cell wall degradation; the domain may have a general peptidoglycan binding function
chr9	2099553	2102285	2099680	2102254	-	Cre09.g393800.t1.1	Cre09.g393800.t1.1		2101717,2101342,2100716,2100281,2099553	2102285,2101533,2100846,2100461,2100040	
chr9	4134796	4138524	4134950	4137172	+	Cre09.g393802.t1.1	Cre09.g393802.t1.1		4134796,4135100,4135388,4135711	4135027,4135208,4135567,4138524	
chr9	4138576	4145037	4138589	4144496	+	Cre09.g393839.t1.1	Cre09.g393839.t1.1		4138576,4139628	4139466,4145037	
chr9	2089366	2099547	2090720	2098608	+	MAPKKK2	Cre09.g393850.t1.1		2089366,2089651,2089990,2090217,2090502,2091014,2091431,2091640,2091908,2092313,2092660,2093113,2093288,2094267,2095658,2096149,2096515,2096856,2097342,2097700,2097996,2098479	2089580,2089766,2090081,2090400,2090857,2091245,2091528,2091769,2092047,2092502,2092920,2093179,2094144,2095533,2095904,2096365,2096694,2097126,2097475,2097879,2098328,2099547	Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329), MOT23; identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr9	4145500	4148285	4145892	4148174	-	Cre09.g393876.t1.1	Cre09.g393876.t1.1		4148121,4147717,4147399,4147055,4146379,4145500	4148285,4148043,4147510,4147302,4146920,4146161	
chr9	2083313	2088201	2083376	2087228	+	GCH2	Cre09.g393900.t1.2		2083313,2083791,2084007,2084295,2084861,2085620,2086018,2086488,2086800,2087093	2083694,2083859,2084043,2084446,2084980,2085715,2086203,2086728,2086816,2088201	Putative bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase, riboflavin (vitamin B2) biosynthesis; RIBA.  Catalyzes the first committed step in riboflavin biosynthesis
chr9	2083313	2088201	2083376	2087228	+	GCH2	Cre09.g393900.t2.1		2083313,2083791,2084007,2084295,2084861,2085620,2086018,2087093	2083694,2083859,2084043,2084446,2084980,2085715,2086203,2088201	Putative bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase, riboflavin (vitamin B2) biosynthesis; RIBA.  Catalyzes the first committed step in riboflavin biosynthesis
chr9	4148396	4151453	4148489	4150918	+	Cre09.g393913.t1.1	Cre09.g393913.t1.1		4148396,4148711,4148969,4149643	4148603,4148766,4149356,4151453	
chr9	2073140	2080445	2074037	2080111	-	FHL2	Cre09.g393950.t1.2		2080025,2079620,2078957,2078443,2077891,2077361,2077067,2076655,2076086,2075671,2075111,2074645,2074362,2073140	2080445,2079788,2079328,2078585,2077984,2077408,2077127,2076791,2076203,2075750,2075215,2074740,2074425,2074147	Similar to AAA domain of FtsH protease, but lacks peptidase domain; may function with Tic214 (Ycf2) in the TIC translocon
chr9	2081159	2083135	2081327	2082800	-	Cre09.g393953.t1.1	Cre09.g393953.t1.1		2082797,2081686,2081159	2083135,2081834,2081418	null-allele mutant was isolated (PMID 29743196)
chr9	2081159	2083135	2082309	2082800	-	Cre09.g393953.t2.1	Cre09.g393953.t2.1		2082797,2081159	2083135,2082531	null-allele mutant was isolated (PMID 29743196)
chr9	4151736	4154318	4151978	4153589	+	FAP106	Cre09.g393954.t1.1		4151736,4152219,4152478,4153006,4153457	4152056,4152357,4152752,4153104,4154318	enkurin
chr9	4154320	4165975	4155173	4165876	-	Cre09.g393991.t1.1	Cre09.g393991.t1.1		4165124,4156333,4156009,4155711,4154320	4165975,4164856,4156131,4155815,4155584	null-allele mutant was isolated (PMID 29743196)
chr9	2071346	2073117	2071547	2072574	+	Cre09.g394000.t1.2	Cre09.g394000.t1.2		2071346	2073117	
chr9	4166080	4177345	4167839	4177100	-	Cre09.g394028.t1.1	Cre09.g394028.t1.1		4168760,4168481,4168157,4166080	4177345,4168609,4168261,4168037	
chr9	2066386	2071027	2066647	2070387	+	CPLD19	Cre09.g394050.t1.2		2066386,2067124,2067664,2068157,2068620,2068831,2069344,2070041	2066727,2067259,2067753,2068309,2068670,2068937,2069535,2071027	Conserved in the Plant Lineage and Diatoms
chr9	4181276	4183051	4181467	4182678	+	Cre09.g394065.t1.1	Cre09.g394065.t1.1		4181276,4181806,4182120,4182482,4182645	4181561,4181968,4182279,4182526,4183051	
chr9	4181276	4183597	4181467	4182678	+	Cre09.g394065.t2.1	Cre09.g394065.t2.1		4181276,4181806,4182120,4182482,4182645	4181561,4181968,4182279,4182526,4183597	
chr9	2062840	2066245	2064076	2066091	-	AP1S1	Cre09.g394100.t1.2		2066088,2065769,2065012,2064666,2062840	2066245,2066022,2065115,2064718,2064139	Expressed Protein. Sigma1-Adaptin. Clathrin Adaptor Complex Subunit, putative member of AP-1 complex
chr9	4186261	4190894	4186298	4190309	+	GUK2	Cre09.g394102.t1.1		4186261,4186836,4187052,4187364,4187735,4188216,4188775,4189117,4189397,4189714,4190075	4186562,4186916,4187141,4187521,4187882,4188561,4188902,4189186,4189509,4189860,4190894	contains a guanylate kinase and an Enoyl-(Acyl carrier protein) reductase domain
chr9	4191491	4196872	4191851	4195382	+	Cre09.g394139.t1.1	Cre09.g394139.t1.1		4191491,4192254,4192607,4192840,4193496,4193863,4194218,4194520,4195007,4195274	4192091,4192345,4192634,4193243,4193697,4193974,4194272,4194610,4195102,4196872	
chr9	2051171	2062505	2051736	2061268	-	RAA1	Cre09.g394150.t1.1		2062271,2059456,2058898,2058357,2058037,2057547,2056944,2056271,2056003,2055666,2055352,2054991,2054447,2053665,2053326,2052851,2052474,2051171	2062505,2061928,2059125,2058746,2058148,2057854,2057193,2056818,2056062,2055746,2055422,2055107,2054720,2054236,2053509,2052978,2052561,2052294	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; necessary for trans-splicing of psaA mRNA
chr9	4196921	4202062	4197236	4201760	+	Cre09.g394176.t1.1	Cre09.g394176.t1.1		4196921,4200178,4200518,4201015,4201753	4199954,4200336,4200622,4201667,4202062	
chr9	2043435	2049685	2044012	2049232	-	FAP102	Cre09.g394200.t1.1		2049171,2048774,2048259,2047647,2044271,2043435	2049685,2048928,2048642,2048150,2047540,2044129	Flagellar Associated Protein, found in the flagellar proteome; Redox-sensitive
chr9	4202098	4204011	4202591	4203763	-	DLT4	Cre09.g394213.t1.1		4203716,4203482,4203083,4202769,4202098	4204011,4203615,4203152,4202832,4202639	Associated with Inner Arm Dynein I1/f and Cytoplasmic Dynein 1b
chr9	2039857	2042695	2040994	2042479	-	Cre09.g394250.t1.2	Cre09.g394250.t1.2		2041912,2041430,2039857	2042695,2041720,2041246	
chr9	4204211	4208300	4204747	4207459	+	PF16	Cre09.g394251.t1.1		4204211,4204931,4205092,4205287,4206073,4206633,4207006	4204843,4205001,4205188,4205706,4206295,4206811,4208300	
chr9	4210295	4214370	4211645	4213703	-	Cre09.g394288.t1.1	Cre09.g394288.t1.1		4213583,4213196,4210295	4214370,4213270,4212875	
chr9	4216201	4219737	4216674	4217826	+	ELIP3	Cre09.g394325.t1.1		4216201,4217026,4217308,4217768	4216857,4217119,4217566,4219737	belongs to chlorophyll A-B binding protein superfamily
chr9	2023630	2038215	2024182	2037969	-	NUP155	Cre09.g394350.t1.2		2037732,2037519,2037045,2036436,2036144,2035696,2035144,2034810,2034325,2033849,2033494,2033049,2032638,2032279,2031707,2031199,2030622,2030171,2029748,2029255,2028581,2028109,2027673,2027291,2027022,2026549,2026137,2025538,2025043,2024445,2023630	2038215,2037578,2037095,2036494,2036239,2035864,2035263,2034956,2034478,2034176,2033597,2033267,2032825,2032326,2032007,2031500,2030983,2030306,2029853,2029397,2028733,2028381,2027872,2027411,2027068,2026651,2026244,2025843,2025309,2024773,2024282	Similar to nuclear pore protein NUP155
chr9	4220771	4227870	4220964	4227593	-	Cre09.g394362.t1.1	Cre09.g394362.t1.1		4227510,4227155,4226518,4222546,4220771	4227870,4227220,4226909,4226281,4222399	
chr9	4228584	4235580	4229056	4235332	-	Cre09.g394399.t1.1	Cre09.g394399.t1.1		4235013,4234676,4234007,4233492,4230927,4230665,4230164,4229510,4228584	4235580,4234827,4234378,4233673,4231213,4230806,4230390,4229898,4229365	
chr9	2005206	2023627	2005976	2021588	+	Cre09.g394400.t1.1	Cre09.g394400.t1.1		2005206,2006732,2007011,2007390,2008011,2008426,2008711,2010528,2011162,2011609,2012111,2015155,2015421,2016818,2017060,2017361,2017713,2018145,2018468,2018883,2019281,2019562,2020267,2020500,2021023	2006606,2006838,2007170,2007755,2008127,2008555,2010206,2010638,2011344,2011923,2014831,2015200,2016649,2016886,2017097,2017451,2017835,2018256,2018595,2018955,2019345,2019721,2020289,2020618,2023627	
chr9	4237297	4242982	4237393	4241600	+	Cre09.g394436.t1.1	Cre09.g394436.t1.1		4237297,4237700,4237997,4238481,4238814,4239228,4239805,4240143,4240395,4240761	4237576,4237792,4238222,4238566,4239006,4239392,4240016,4240253,4240578,4242982	
chr9	2001392	2005087	2003141	2005007	-	Cre09.g394450.t1.2	Cre09.g394450.t1.2		2004974,2004575,2004278,2003822,2001392	2005087,2004828,2004429,2003947,2003317	has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran; also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran
chr9	4243439	4250404	4245072	4250162	-	LCI9	Cre09.g394473.t1.1		4250142,4249827,4249507,4249156,4248738,4248371,4247899,4247619,4247203,4246688,4246213,4245888,4245478,4243439	4250404,4249894,4249571,4249357,4248860,4248468,4248052,4247704,4247391,4246867,4246341,4246019,4245662,4245214	Low-CO2 inducible protein, containing starch-binding domain of CBM_20 (pfam00686) found in glycoside hydrolases. Because Chlamydomonas cells develop pyrenoids under low-CO2 conditions, which are surrounded by a typical starch sheath, Lci9 may function in
chr9	4251387	4258170	4253220	4257803	-	Cre09.g394510.t1.1	Cre09.g394510.t1.1		4257780,4257031,4256539,4255951,4255486,4255099,4254662,4254248,4253888,4253609,4251387	4258170,4257498,4256697,4256215,4255581,4255158,4254856,4254400,4253974,4253707,4253418	
chr9	4258809	4264009	4259054	4262503	+	Cre09.g394547.t1.1	Cre09.g394547.t1.1		4258809,4259164,4259355,4259559,4259979,4260336,4260769,4261269,4261700,4262042,4262311	4259074,4259234,4259422,4259723,4260110,4260582,4260977,4261505,4261825,4262140,4264009	
chr9	1996927	2000917	1998172	2000462	-	RPPK2	Cre09.g394550.t1.2		2000265,1999866,1999503,1999064,1996927	2000917,2000181,1999673,1999223,1998375	ribose-phosphate pyrophosphokinase (RPPK) = phosphoribosylpyrophosphate synthetase (P-Rib-PP synthetase) (PRPP synthetase); normally a highly regulated enzyme; PRPP is an essential precursor for purines and for histidine
chr9	4264035	4267240	4264414	4267093	-	Cre09.g394584.t1.1	Cre09.g394584.t1.1		4267012,4266311,4265770,4265379,4264880,4264035	4267240,4266860,4266065,4265510,4264996,4264705	Probable methyltransferase activity; related to glucose inhibited division protein
chr9	1992640	1996057	1993289	1995866	-	Cre09.g394600.t1.2	Cre09.g394600.t1.2		1994336,1993808,1992640	1996057,1993909,1993595	
chr9	4268951	4283640	4269166	4282649	+	Cre09.g394621.t1.1	Cre09.g394621.t1.1		4268951,4269393,4269708,4270097,4270811,4271401,4271905,4272390,4273617,4273883,4274204,4274528,4275052,4275569,4275935,4276348,4276755,4277079,4277770,4278182,4278685,4279152,4279641,4279952,4281041,4281356	4269302,4269496,4269813,4270239,4270994,4271525,4272145,4273309,4273676,4273990,4274311,4274734,4275281,4275698,4276061,4276424,4276853,4277162,4277874,4278307,4278831,4279301,4279709,4280254,4281109,4283640	
chr9	4268951	4283640	4269166	4282649	+	Cre09.g394621.t2.1	Cre09.g394621.t2.1		4268951,4269393,4269708,4270097,4270811,4271401,4271905,4272390,4273617,4273883,4274204,4274528,4275052,4275569,4275935,4276348,4276755,4277079,4277770,4278182,4278685,4279152,4279641,4279952,4281041,4281356	4269302,4269496,4269813,4270239,4270994,4271525,4272145,4273309,4273676,4273990,4274311,4274734,4275281,4275698,4276061,4276424,4276853,4277162,4277874,4278307,4278831,4279301,4279709,4280050,4281109,4283640	
chr9	4283645	4287700	4284004	4287314	-	LCI28	Cre09.g394658.t1.1		4287123,4286646,4286357,4286035,4285516,4285174,4284987,4284549,4283645	4287700,4286745,4286428,4286103,4285620,4285219,4285042,4284746,4284232	Contains Aldo/keto reductase family (pfam00248.12). This family includes a number of K+ ion channel beta chain regulatory domains - these are reported to have oxidoreductase activity. Low-CO2 inducible gene revealed by cDNA array analyses. Acclimation to
chr9	4287801	4294318	4287891	4294096	+	Cre09.g394695.t1.1	Cre09.g394695.t1.1		4287801,4288389,4289092,4289498,4289832,4290519,4290897,4291380,4291660,4291963,4292386,4292741	4288225,4288892,4289293,4289639,4290342,4290673,4291069,4291471,4291793,4292141,4292600,4294318	
chr9	1981473	1989494	1981909	1989128	-	RNZ1	Cre09.g394700.t1.1		1988537,1987469,1986981,1986471,1986074,1985711,1985171,1984810,1984391,1984078,1983685,1982259,1981473	1989494,1988406,1987038,1986639,1986160,1985886,1985350,1984919,1984547,1984184,1983841,1983316,1981909	contains SAP domain; may be tRNase Z, involved in 3'-end maturation of tRNA
chr9	1989598	1992203	1989689	1990509	+	Cre09.g394701.t1.1	Cre09.g394701.t1.1		1989598,1990431	1990100,1992203	
chr9	4294394	4304640	4294978	4304307	-	CEP131	Cre09.g394732.t1.1		4304288,4304114,4303797,4303602,4302505,4301485,4299269,4298901,4298520,4298138,4297779,4297391,4296975,4296754,4296397,4296118,4295697,4295367,4294394	4304640,4304216,4303998,4303643,4303416,4302297,4301311,4299116,4298785,4298243,4297970,4297564,4297202,4296815,4296526,4296258,4295969,4295513,4295164	Identified by comparative genomics as being present only in organisms having motile (MOT) cilia; BBSome Regulator
chr9	1977038	1981327	1978308	1981130	-	PRPS1	Cre09.g394750.t1.2		1980590,1980344,1979840,1979575,1979368,1978590,1977038	1981327,1980442,1979983,1979646,1979439,1978818,1978463	imported to chloroplast; Chloroplast Small Ribosomal Subunit Protein S1.  This is a polyribonucleotide nucleotidyltransferase (see PNK series)
chr9	4304761	4309354	4304839	4308535	+	Cre09.g394769.t1.1	Cre09.g394769.t1.1		4304761,4305201,4305442,4305696,4305996,4306372,4306762,4307102,4307476,4308172	4305089,4305267,4305502,4305784,4306110,4306573,4306886,4307211,4307842,4309354	
chr9	1973048	1977029	1973244	1976475	+	MCP16	Cre09.g394800.t1.1		1973048,1973637,1974098,1974444,1975485,1975762,1976040,1976271	1973433,1973744,1974170,1975179,1975550,1975837,1976078,1977029	possible ADP,ATP carrier protein
chr9	4309401	4313862	4309425	4313249	+	Cre09.g394806.t1.1	Cre09.g394806.t1.1		4309401,4310682,4311131	4310434,4310875,4313862	null-allele mutant was isolated (PMID 29743196)
chr9	4313866	4317625	4314565	4317358	-	Cre09.g394843.t1.1	Cre09.g394843.t1.1		4316982,4315025,4313866	4317625,4316596,4314744	
chr9	1965178	1972927	1965890	1972797	-	TEF24	Cre09.g394850.t1.2		1972763,1972587,1971719,1970676,1970203,1969783,1969290,1968888,1968583,1968305,1967870,1967365,1966290,1965178	1972927,1972641,1971873,1970742,1970375,1969853,1969532,1969001,1968669,1968416,1967980,1967417,1966361,1966004	LrgB-like protein, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]
chr9	4317741	4326432	4317970	4325601	+	Cre09.g394880.t1.1	Cre09.g394880.t1.1		4317741,4318532,4319403,4319629,4320166,4321300,4321909,4322325,4323897,4324315,4324739,4325100,4325406	4318109,4318921,4319449,4319836,4320395,4321428,4321998,4322452,4323982,4324503,4324905,4325147,4326432	
chr9	1950422	1964607	1951065	1964181	-	Cre09.g394900.t1.1	Cre09.g394900.t1.1		1964047,1963692,1963191,1962964,1962736,1962481,1962106,1961877,1961305,1960880,1960271,1960059,1959842,1959473,1959065,1957541,1957278,1956937,1956646,1956469,1956247,1955935,1955647,1950422	1964607,1963815,1963294,1963050,1962766,1962581,1962274,1961925,1961564,1961100,1960368,1960150,1959909,1959653,1959301,1958949,1957422,1957131,1956804,1956527,1956340,1956027,1955778,1955490	Contains a periplasmic binding protein-like II domain and bacterial extracellular solute-binding (family 1) domain and a Class III nucleotidyl cyclase domain; may be involved in solute transport and early steps of a signal transduction cascade
chr9	4327466	4332170	4328368	4331816	-	Cre09.g394917.t1.1	Cre09.g394917.t1.1		4331508,4331108,4330840,4330217,4329939,4329437,4329049,4328732,4327466	4332170,4331183,4330945,4330305,4330031,4329538,4329198,4328812,4328515	
chr9	4332259	4335880	4332787	4335629	-	Cre09.g394954.t1.1	Cre09.g394954.t1.1		4335115,4334407,4333965,4333662,4333229,4332259	4335880,4334490,4334046,4333757,4333343,4332931	
chr9	4336171	4344142	4337323	4343487	+	Cre09.g394991.t1.1	Cre09.g394991.t1.1		4336171,4337236,4339019,4340618,4341522,4341940,4342268,4342615,4343095,4343374	4336875,4338669,4340516,4341213,4341708,4342011,4342363,4342845,4343152,4344142	
chr9	1944978	1950419	1945016	1950011	+	Cre09.g395000.t1.2	Cre09.g395000.t1.2		1944978,1945295,1945810,1946258,1947581,1948046,1948239,1948706,1949073,1949352,1949632,1949863	1945120,1945613,1945965,1946671,1947811,1948099,1948394,1948773,1949084,1949406,1949717,1950419	
chr9	4344163	4348670	4344959	4348388	-	Cre09.g395028.t1.1	Cre09.g395028.t1.1		4347825,4347253,4346628,4345935,4345640,4344163	4348670,4347382,4346732,4346270,4345681,4345070	
chr9	1932292	1944877	1932848	1944411	-	Cre09.g395050.t1.1	Cre09.g395050.t1.1		1943918,1937956,1935297,1934993,1934389,1933811,1932292	1944877,1943660,1937777,1935096,1934509,1934154,1933554	
chr9	4349224	4352240	4351902	4352131	-	Cre09.g395065.t1.1	Cre09.g395065.t1.1		4349224	4352240	
chr9	1929036	1932289	1929116	1931134	+	MKP4	Cre09.g395100.t1.2		1929036,1929500,1929881,1930114,1930589,1931050	1929272,1929530,1929985,1930336,1930721,1932289	DSP4 (Dual Specificity Protein Phosphatase 4) Dephosphorylates and inactivates MAP kinases; Dephosphorylates phosphotyrosine, phosphoserine, and phosphothreonine residues; linked to related MKP3
chr9	4352296	4357540	4352467	4355931	-	Cre09.g395102.t1.1	Cre09.g395102.t1.1		4356861,4354087,4353753,4352296	4357540,4355998,4353770,4353596	null-allele mutant was isolated (PMID 29743196)
chr9	4358714	4364599	4359293	4364418	-	Cre09.g395139.t1.1	Cre09.g395139.t1.1		4364266,4363989,4363645,4363329,4363029,4362549,4362008,4360344,4359962,4359649,4358714	4364599,4364052,4363747,4363452,4363083,4362693,4362185,4361478,4360116,4359714,4359483	
chr9	1926428	1928989	1926578	1927955	+	MKP3	Cre09.g395150.t1.2		1926428,1926683,1927008,1927372,1927714	1926598,1926753,1927112,1927594,1928989	MKP4
chr9	4366140	4367861	4366165	4367500	+	Cre09.g395176.t2.1	Cre09.g395176.t2.1		4366140,4366761,4367027,4367485	4366437,4366829,4367162,4367861	
chr9	4365540	4367861	4365963	4367500	+	Cre09.g395176.t1.1	Cre09.g395176.t1.1		4365540,4366340,4366761,4367027,4367485	4366091,4366437,4366833,4367162,4367861	
chr9	1919148	1926359	1919469	1925154	+	Cre09.g395200.t1.1	Cre09.g395200.t1.1		1919148,1920031,1920512,1921123,1921685,1921970,1922258,1922846,1923206,1923677,1923965,1924734	1919610,1920189,1920613,1921246,1921818,1922012,1922502,1922944,1923487,1923733,1924519,1926359	
chr9	4368090	4369269	4368221	4368830	+	Cre09.g395213.t1.1	Cre09.g395213.t1.1		4368090,4368416,4368755	4368283,4368491,4369269	
chr9	1912132	1918707	1913091	1918373	-	FAP36	Cre09.g395250.t1.1		1918495,1918286,1917314,1916917,1916452,1915980,1915342,1914973,1914455,1914139,1913773,1913340,1912132	1918707,1918378,1917400,1916967,1916526,1916111,1915419,1915065,1914757,1914322,1913891,1913474,1913205	Alanine rich protein, found in flagellar proteome; MOT5; identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr9	4369336	4375839	4370549	4374794	-	Cre09.g395251.t1.1	Cre09.g395251.t1.1		4375399,4375168,4373367,4371848,4371490,4371005,4369336	4375839,4375205,4374909,4372796,4371642,4371187,4370696	
chr9	4375940	4383481	4377215	4382741	+	Cre09.g395288.t1.1	Cre09.g395288.t1.1		4375940,4377177,4377472,4378045,4378431,4378988,4379341,4379564,4380058,4380654,4381053,4381482,4381936,4382289,4382565	4375973,4377374,4377714,4378185,4378541,4379135,4379409,4379706,4380310,4380747,4381110,4381577,4382031,4382379,4383481	Sodium:hydrogen antiporter NhaD.  Previously annotated as NHAD1
chr9	1900878	1906749	1901416	1906071	+	Cre09.g395300.t1.2	Cre09.g395300.t1.2		1900878,1901216,1901903,1902427,1903315,1903611,1903950,1904320,1904676,1905121,1905407,1905987	1901108,1901692,1902205,1902498,1903451,1903680,1904129,1904422,1904770,1905163,1905495,1906749	
chr9	4383602	4386079	4384364	4385910	-	Cre09.g395325.t1.1	Cre09.g395325.t1.1		4385586,4384806,4383602	4386079,4384865,4384487	
chr9	1898098	1900571	1898481	1900027	+	ASA9	Cre09.g395350.t1.1		1898098,1898731,1898855,1899046,1899520,1899976	1898600,1898752,1898933,1899060,1899569,1900571	Mitochondrial ATP synthase associated protein 9; part of peripheral stalk involed in dimerization; found in mitochondrial membrane proteome (ObsMass=998 kDa) and in soluble fraction (< 25kDa) by Atteia et al; appears resistant to NaOH and NaCl extraction; N-terminal Met removed, N-terminally acetylated; unknown function; also found in thylakoid proteome (Allmer, Naumann, Markert, Zhang and Hippler)
chr9	4386180	4395175	4386301	4394530	+	Cre09.g395362.t1.1	Cre09.g395362.t1.1		4386180,4386578,4387149,4387705,4388170,4388676,4389688,4390069,4390426,4391045,4391737,4392558,4393151,4393596	4386356,4386778,4387189,4387806,4388298,4389328,4389769,4390125,4390576,4391316,4392085,4392670,4393206,4395175	
chr9	4395390	4399171	4395471	4398749	+	Cre09.g395399.t1.1	Cre09.g395399.t1.1		4395390,4397436,4398125	4397212,4397818,4399171	
chr9	1891415	1897997	1893017	1897537	-	Cre09.g395400.t1.1	Cre09.g395400.t1.1		1896830,1896223,1895782,1894794,1891415	1897997,1896539,1895906,1895552,1894637	
chr9	4399244	4405589	4399906	4405505	-	Cre09.g395436.t1.1	Cre09.g395436.t1.1		4405338,4405080,4404700,4403655,4403215,4402956,4402573,4402134,4401558,4401095,4400404,4399244	4405589,4405163,4404757,4403737,4403266,4403027,4402692,4402229,4401870,4401202,4400909,4400098	
chr9	1886542	1891107	1887206	1890816	-	Cre09.g395450.t1.2	Cre09.g395450.t1.2		1890711,1890252,1889948,1889540,1889143,1888680,1888229,1887790,1886542	1891107,1890508,1890139,1889726,1889315,1888899,1888411,1887968,1887540	
chr9	1886542	1891107	1887206	1890816	-	Cre09.g395450.t2.1	Cre09.g395450.t2.1		1890711,1890257,1889948,1889540,1889143,1888680,1888229,1887790,1886542	1891107,1890508,1890126,1889726,1889315,1888899,1888411,1887968,1887540	
chr9	4405740	4411771	4405841	4410373	+	Cre09.g395473.t1.1	Cre09.g395473.t1.1		4405740,4406089,4406395,4406904,4407860,4408129,4408677,4409408,4409794,4410268	4405948,4406161,4406742,4407267,4407948,4408380,4408925,4409469,4409902,4411771	
chr9	1878873	1885978	1879641	1885778	-	HEATR2	Cre09.g395500.t1.2		1885091,1884635,1884143,1883300,1882949,1881665,1881395,1880864,1880418,1880038,1878873	1885978,1884769,1884283,1883949,1883006,1882645,1881460,1881175,1880575,1880095,1879788	
chr9	4412880	4420518	4413606	4419873	+	Cre09.g395510.t1.1	Cre09.g395510.t1.1		4412880,4414931,4416243,4417800,4419176,4419817	4414172,4415990,4417250,4419095,4419341,4420518	
chr9	4420537	4426749	4422869	4426509	-	Cre09.g395547.t1.1	Cre09.g395547.t1.1		4426146,4425862,4424241,4423820,4420537	4426749,4425896,4425510,4424029,4423289	
chr9	4420791	4426749	4422869	4426509	-	Cre09.g395547.t2.1	Cre09.g395547.t2.1		4426146,4425862,4424241,4423820,4420791	4426749,4425896,4425510,4424029,4423289	
chr9	4420974	4426749	4422869	4426509	-	Cre09.g395547.t3.1	Cre09.g395547.t3.1		4426146,4425862,4424241,4423820,4420974	4426749,4425896,4425510,4424029,4423289	
chr9	1874139	1878870	1874347	1878590	+	Cre09.g395550.t1.1	Cre09.g395550.t1.1		1874139,1874772,1875175,1875603,1875867,1876560,1876839,1877201,1877504	1874527,1874861,1875261,1875640,1876011,1876618,1876899,1877299,1878870	
chr9	4426798	4440439	4427572	4439705	-	Cre09.g395584.t1.1	Cre09.g395584.t1.1		4440219,4439567,4438960,4438564,4437975,4437486,4437130,4428117,4426798	4440439,4439976,4439094,4438660,4438075,4437540,4437207,4436920,4427668	
chr9	1865093	1873968	1865722	1873775	-	Cre09.g395600.t1.1	Cre09.g395600.t1.1		1873570,1873253,1872817,1872509,1871857,1871400,1870812,1870481,1870081,1869576,1868917,1868647,1867989,1867703,1867284,1865093	1873968,1873303,1872948,1872585,1872030,1871502,1870918,1870639,1870210,1869692,1869092,1868761,1868449,1867789,1867433,1866100	
chr9	4440540	4446251	4440671	4445595	+	Cre09.g395621.t1.1	Cre09.g395621.t1.1		4440540,4441341,4441595,4441873,4442426,4442794,4443220,4445595	4441057,4441440,4441684,4442136,4442611,4442919,4444109,4446251	ts-lethal mutant was isolated (PMID 29743196)
chr9	1864240	1865038	1864394	1864788	-	Cre09.g395646.t1.2	Cre09.g395646.t1.2		1864930,1864240	1865038,1864797	
chr9	1860872	1864097	1861679	1863968	-	Cre09.g395650.t1.1	Cre09.g395650.t1.1		1863830,1863369,1863020,1862224,1860872	1864097,1863560,1863092,1862319,1861825	
chr9	4448026	4459369	4450659	4458885	-	Cre09.g395658.t1.1	Cre09.g395658.t1.1		4458879,4458443,4458139,4457522,4457188,4456657,4456288,4453160,4448026	4459369,4458524,4458224,4457668,4457292,4456863,4456497,4455954,4452973	
chr9	4460724	4470539	4461912	4469763	-	Cre09.g395695.t1.1	Cre09.g395695.t1.1		4469642,4469054,4468577,4467359,4466968,4466585,4464648,4460724	4470539,4469184,4468723,4467463,4467174,4466794,4466338,4464364	
chr9	1855913	1860758	1856067	1860635	-	Cre09.g395700.t1.1	Cre09.g395700.t1.1		1860047,1859760,1859456,1859075,1858747,1858344,1857860,1857499,1857144,1856753,1856398,1855913	1860758,1859831,1859504,1859173,1858805,1858442,1858019,1857581,1857260,1856851,1856510,1856119	
chr9	4471130	4476451	4471298	4474613	+	Cre09.g395732.t1.1	Cre09.g395732.t1.1		4471130,4471513,4471740,4472024,4472305	4471416,4471651,4471806,4472121,4476451	
chr9	1845139	1855900	1846049	1855130	+	Cre09.g395750.t1.1	Cre09.g395750.t1.1		1845139,1846023,1846233,1846443,1847255,1847593,1848001,1848378,1848641,1848930,1849272,1849616,1849981,1850366,1850663,1850981,1851700,1852116,1852610,1852910,1853329,1853847,1854124,1854557,1855024	1845908,1846159,1846308,1846989,1847382,1847814,1848186,1848494,1848715,1849055,1849465,1849732,1850141,1850508,1850786,1851520,1851932,1852404,1852730,1853131,1853655,1853928,1854373,1854818,1855900	
chr9	4476657	4497579	4477380	4497035	-	FAP177	Cre09.g395769.t1.1		4497385,4496978,4496285,4495847,4495345,4495020,4494592,4494216,4493907,4493473,4493044,4492718,4492256,4491749,4491373,4491038,4490765,4490301,4489910,4489563,4489212,4488991,4488689,4488121,4487819,4487500,4487139,4486778,4486303,4485285,4484611,4483998,4483757,4483175,4482573,4482351,4481847,4481233,4480990,4480692,4480298,4479894,4479645,4479421,4479127,4478839,4478559,4478116,4477712,4476657	4497579,4497113,4496447,4495975,4495488,4495111,4494816,4494305,4494039,4493744,4493262,4492888,4492435,4491973,4491546,4491151,4490846,4490530,4490113,4489712,4489418,4489062,4488839,4488509,4487933,4487705,4487258,4486949,4486524,4486055,4485081,4484477,4483818,4483568,4483052,4482412,4482246,4481697,4481069,4480856,4480499,4480093,4479698,4479477,4479280,4478987,4478642,4478250,4477915,4477518	
chr9	4476657	4497579	4477380	4496963	-	FAP177	Cre09.g395769.t2.1		4497385,4496945,4496285,4495847,4495345,4495020,4494592,4494216,4493907,4493473,4493044,4492718,4492256,4491749,4491373,4491038,4490765,4490301,4489910,4489563,4489212,4488991,4488689,4488121,4487819,4487500,4487139,4486778,4486303,4485285,4484611,4483998,4483757,4483175,4482573,4482351,4481847,4481233,4480990,4480692,4480298,4479894,4479645,4479421,4479127,4478839,4478559,4478116,4477712,4476657	4497579,4497113,4496447,4495975,4495488,4495111,4494816,4494305,4494039,4493744,4493262,4492888,4492435,4491973,4491546,4491151,4490846,4490530,4490113,4489712,4489418,4489062,4488839,4488509,4487933,4487705,4487258,4486949,4486524,4486055,4485081,4484477,4483818,4483568,4483052,4482412,4482246,4481697,4481069,4480856,4480499,4480093,4479698,4479477,4479280,4478987,4478642,4478250,4477915,4477518	
chr9	1841979	1844898	1842803	1844822	-	Cre09.g395800.t1.2	Cre09.g395800.t1.2		1844816,1844622,1844424,1844029,1843515,1843173,1841979	1844898,1844702,1844478,1844151,1843591,1843259,1842863	
chr9	4498012	4502839	4498172	4502262	-	Cre09.g395806.t1.1	Cre09.g395806.t1.1		4502389,4501863,4501619,4501374,4501171,4500520,4500082,4499760,4499447,4499126,4498804,4498012	4502839,4502301,4501722,4501500,4501228,4500860,4500291,4499862,4499592,4499194,4498881,4498598	
chr9	4503899	4509299	4505149	4509021	-	Cre09.g395843.t1.1	Cre09.g395843.t1.1		4508958,4507720,4507071,4506598,4506273,4503899	4509299,4508751,4507485,4506918,4506467,4506147	
chr9	1838109	1841806	1838569	1840845	+	Cre09.g395850.t1.2	Cre09.g395850.t1.2		1838109,1838770	1838669,1841806	
chr9	4509770	4514425	4510290	4514283	-	Cre09.g395880.t1.1	Cre09.g395880.t1.1		4514274,4513419,4511903,4511495,4511163,4509770	4514425,4513961,4512808,4511622,4511262,4510971	
chr9	1832609	1837931	1832777	1836735	+	CSV3	Cre09.g395900.t1.2		1832609,1833027,1833546,1833904,1834537,1834995,1835238	1832913,1833315,1833696,1834197,1834693,1835083,1837931	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr9	4514550	4517923	4514670	4517563	+	Cre09.g395917.t1.1	Cre09.g395917.t1.1		4514550,4515319,4516857,4517452	4514835,4516503,4516994,4517923	
chr9	296143	299474	296671	298744	+	Cre09.g395925.t1.1	Cre09.g395925.t1.1		296143,297019	296911,299474	
chr9	1828148	1832062	1828239	1831204	+	AOX1	Cre09.g395950.t1.2		1828148,1828794,1829230,1829553,1829989,1830397,1830639,1831082	1828395,1829075,1829293,1829693,1830101,1830456,1830783,1832062	alternative oxidase, mitochondrial precursor see gi 9027543 gb AAC05743.2 [9027543], [PMID: 11405094]
chr9	4519790	4521206	4519853	4520295	+	Cre09.g395954.t1.1	Cre09.g395954.t1.1		4519790,4520295	4520185,4521206	
chr9	4522020	4522400	4522095	4522351	+	Cre09.g395991.t1.1	Cre09.g395991.t1.1		4522020	4522400	
chr9	1821982	1827398	1822905	1826837	-	NRT2.3	Cre09.g396000.t1.2		1826672,1826126,1825852,1825467,1825005,1824560,1824234,1823820,1823469,1821982	1827398,1826303,1825986,1825621,1825183,1824738,1824328,1824028,1823595,1823202	high affinity nitrite transporter and low affinity nitrate transporter (system III), also called NAR5; [PMID: 11289304]
chr9	4522524	4529139	4523049	4528731	-	Cre09.g396028.t1.1	Cre09.g396028.t1.1		4528572,4527940,4527439,4526938,4526512,4526100,4525858,4524839,4524190,4523729,4522524	4529139,4528285,4527635,4527214,4526717,4526322,4525907,4524951,4524412,4523974,4523481	
chr9	1812029	1821372	1812263	1820226	+	Cre09.g396050.t1.1	Cre09.g396050.t1.1		1812029,1813125,1813798,1814248,1814793,1815225,1815722,1816187,1816640,1817094,1817542,1817872,1818592,1819685,1820160	1812675,1813211,1813913,1814322,1814903,1815299,1815805,1816249,1816751,1817218,1817604,1818267,1819391,1819742,1821372	
chr9	4529342	4537299	4531431	4536965	-	ALK5	Cre09.g396065.t1.1		4536669,4533682,4533476,4533163,4532840,4532211,4531672,4529342	4537299,4536439,4533520,4533243,4532911,4532507,4532007,4531464	
chr9	1809519	1811468	1809623	1810963	+	PHC15	Cre09.g396100.t1.2		1809519,1809911,1810316,1810745	1809643,1810082,1810433,1811468	Pherophorin-C15 (PHC15) [PMID: 16367971]; belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain.
chr9	4537349	4543826	4538701	4543559	-	Cre09.g396102.t1.1	Cre09.g396102.t1.1		4543373,4542976,4541936,4541694,4541127,4540721,4540297,4539909,4539270,4537349	4543826,4543071,4542520,4541740,4541408,4540817,4540390,4539999,4539381,4538770	null-allele mutant was isolated (PMID 29743196)
chr9	4543940	4554787	4544070	4553554	+	Cre09.g396139.t1.1	Cre09.g396139.t1.1		4543940,4544766,4545519,4546017,4546378,4547065,4547359,4548205,4548685,4549055,4549467,4549815,4550235,4551646,4551933,4552294,4552780,4553188	4544472,4545266,4545737,4546060,4546539,4547158,4547903,4548457,4548783,4549150,4549547,4549922,4550322,4551716,4552031,4552413,4552965,4554787	
chr9	1798113	1805928	1798726	1805752	-	Cre09.g396150.t1.1	Cre09.g396150.t1.1		1805698,1804866,1804409,1803988,1803546,1803112,1802623,1802425,1802296,1802037,1801691,1801346,1800920,1800511,1800176,1799691,1799233,1798113	1805928,1805524,1804467,1804079,1803740,1803215,1802748,1802445,1802365,1802081,1801738,1801398,1800992,1800630,1800405,1799839,1799471,1798834	
chr9	1798113	1805928	1798726	1805752	-	Cre09.g396150.t2.1	Cre09.g396150.t2.1		1805698,1804866,1804409,1803988,1803546,1803112,1802623,1802429,1802296,1802037,1801691,1801346,1800920,1800511,1800176,1799691,1799233,1798113	1805928,1805524,1804467,1804079,1803740,1803215,1802748,1802445,1802351,1802081,1801738,1801398,1800992,1800630,1800405,1799839,1799471,1798834	
chr9	4554804	4556609	4556087	4556316	-	Cre09.g396176.t1.1	Cre09.g396176.t1.1		4554804	4556609	
chr9	1790264	1797348	1792780	1796956	-	CSV4	Cre09.g396200.t1.2		1796796,1796383,1795499,1795087,1790264	1797348,1796479,1795958,1795329,1794946	Belongs to a family of 14 genes, sometimes found in pairs or clusters, with homologs only in Gonium; function unknown
chr9	4556780	4559169	4556817	4558485	+	PSBO	Cre09.g396213.t1.1		4556780,4556952,4557245,4557625,4558058,4558359	4556867,4557042,4557505,4557840,4558189,4559169	Chloroplast precursor
chr9	1784769	1789900	1785029	1788233	+	VTE5	Cre09.g396250.t1.2		1784769,1785677,1785997,1786243,1786928,1787351,1787923	1785548,1785744,1786053,1786330,1786994,1787504,1789900	related to VTE5 in Arabidopsis, PMID: 16361393
chr9	4560350	4569672	4560424	4568975	+	GSR2	Cre09.g396252.t1.1		4560350,4560612,4561052,4561533,4562302,4562903,4563290,4564074,4564360,4564708,4565843,4566173,4566626,4567196,4567588,4568004,4568386,4568927	4560452,4560668,4561168,4561588,4562405,4562975,4563382,4564115,4564452,4564827,4566014,4566240,4566710,4567311,4567701,4568078,4568469,4569672	Glutathione reductase (GR) (Grase).  Previously annotated as GSHR2
chr9	4569674	4576189	4570411	4575806	-	Cre09.g396289.t1.1	Cre09.g396289.t1.1		4576061,4574234,4573932,4573602,4573066,4572778,4572463,4572086,4571595,4571153,4570776,4569674	4576189,4575920,4574028,4573719,4573201,4572827,4572517,4572207,4571868,4571277,4570877,4570511	
chr9	1777394	1784638	1778073	1784544	-	PPX1	Cre09.g396300.t1.2		1784097,1783850,1783136,1782818,1782376,1782040,1781812,1781391,1780949,1780406,1780005,1778932,1778547,1777394	1784638,1783894,1783277,1782867,1782461,1782108,1781870,1781460,1781102,1780552,1780148,1779024,1778643,1778162	Protoporphyrinogen oxidase, chloroplast precursor (PPO I) [GI:3928794; PMID: 9862501; PMID: 16306143]; Protoporphyrinogen IX oxidase isozyme I (PPX I); similar to Bacillus subtilis HEMY type protoporphyrinogen oxidase; [PMID: 1459957, PMID: 7928957]
chr9	4576343	4584359	4577812	4584037	-	Cre09.g396326.t1.1	Cre09.g396326.t1.1		4584285,4583934,4582368,4581489,4580812,4579822,4579343,4576343	4584359,4584054,4583593,4581543,4581161,4580119,4579472,4579172	
chr9	1771772	1776108	1773160	1775584	-	Cre09.g396350.t1.2	Cre09.g396350.t1.2		1775955,1774663,1774098,1771772	1776108,1775738,1774415,1773913	
chr9	4584519	4586890	4584770	4586339	+	TIM14	Cre09.g396363.t1.1		4584519,4584892,4585437,4585983,4586253	4584773,4585020,4585520,4586025,4586890	TIM14, subunit of the presequence translocase-associated protein import complex (TIM23), which drives the completion of protein transport into the mitochondrial matrix. Also named PAM18
chr9	1768589	1771640	1768717	1770618	+	UBQ2	Cre09.g396400.t1.2		1768589,1769198,1769826,1770205,1770591	1768820,1769315,1769957,1770286,1771640	post-translationally modifies protein to tag them for proteasome-mediated degradation, internalization etc..; contains two ubiquitin domains in tandem
chr9	4586970	4590701	4587195	4589948	+	Cre09.g396401.t1.1	Cre09.g396401.t1.1		4586970,4587929,4588537,4588924,4589373	4587499,4588046,4588667,4589049,4590701	Siroheme synthase [Includes: Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) Uroporphyrinogen III methylase) (UROM); Precorrin-2 dehydrogenase; Sirohydrochlorin ferrochelatase]; formerly SUMT1--renamed UPM1 by the advice of Sam Beale.
chr9	4591594	4604249	4593080	4604140	-	Cre09.g396438.t1.1	Cre09.g396438.t1.1		4604107,4603796,4603295,4602969,4602711,4602133,4601728,4601186,4600638,4600284,4599688,4599191,4598182,4597873,4597477,4597035,4596426,4596088,4595853,4595533,4595170,4594724,4591594	4604249,4604037,4603608,4603001,4602802,4602222,4601873,4601312,4600814,4600411,4600051,4599424,4598982,4597986,4597764,4597145,4596899,4596189,4595934,4595632,4595374,4594906,4594460	
chr9	1763603	1768478	1764657	1768357	-	APT3	Cre09.g396450.t1.1		1768154,1767904,1767543,1766912,1766517,1766069,1763603	1768478,1767979,1767668,1767353,1766604,1766165,1765800	Acid phosphatase.  Previously annotated as GOX15 as a galactose oxidase, for which there is some structural similarlity
chr9	1756083	1763498	1756773	1763335	-	GOX15	Cre09.g396451.t1.1		1763227,1762508,1762233,1761928,1761763,1761515,1761313,1760956,1760687,1760475,1760224,1759989,1759354,1759022,1758758,1758340,1757954,1757497,1757181,1756083	1763498,1762677,1762280,1761977,1761788,1761555,1761363,1761036,1760747,1760511,1760329,1760047,1759523,1759132,1758794,1758495,1758042,1757633,1757289,1756953	The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate of the Chlamydomonas isoforms is uncertain; belongs to a family of 20 genes more related to each other than to their higher plant homologues, contain the kelch repeat and a C-terminal domain of unknown function (E-set domains of sugar-utilizing enzymes); contains N-terminal hydroxyproline-rich domain
chr9	4604310	4611079	4605304	4610590	-	Cre09.g396475.t1.1	Cre09.g396475.t1.1		4610783,4610143,4609688,4608772,4608275,4606448,4606171,4605796,4604310	4611079,4610703,4609984,4609485,4608619,4608070,4606269,4605846,4605556	
chr9	1752155	1755928	1752947	1755878	-	HAD3	Cre09.g396500.t1.1		1755800,1755659,1755344,1754936,1754489,1754104,1753700,1753337,1752155	1755928,1755703,1755409,1755056,1754583,1754183,1753826,1753468,1753073	
chr9	4612515	4617139	4613982	4616710	-	OPR12	Cre09.g396512.t1.1		4616653,4616316,4616058,4615719,4614962,4614681,4614369,4612515	4617139,4616570,4616114,4615850,4615531,4614821,4614527,4614216	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr9	4617612	4620159	4618232	4619469	-	Cre09.g396549.t1.1	Cre09.g396549.t1.1		4619735,4617612	4620159,4619501	
chr9	1747239	1751854	1748104	1750271	+	Cre09.g396550.t1.2	Cre09.g396550.t1.2		1747239,1747876	1747424,1751854	
chr9	1745439	1747190	1745981	1746231	+	Cre09.g396586.t1.2	Cre09.g396586.t1.2		1745439	1747190	
chr9	4620631	4624969	4621626	4624775	-	Cre09.g396587.t1.1	Cre09.g396587.t1.1		4624727,4624494,4624187,4623885,4623611,4623265,4622810,4622487,4622048,4620631	4624969,4624607,4624213,4623924,4623693,4623374,4622909,4622499,4622185,4621784	
chr9	4620631	4624969	4622049	4624775	-	Cre09.g396587.t2.1	Cre09.g396587.t2.1		4624727,4624494,4624187,4623885,4623611,4623265,4622815,4620631	4624969,4624607,4624213,4623924,4623693,4623374,4622909,4622192	
chr9	4620631	4624969	4622481	4624775	-	Cre09.g396587.t3.1	Cre09.g396587.t3.1		4624727,4624494,4624187,4623885,4623611,4623265,4622810,4620631	4624969,4624607,4624213,4623924,4623693,4623374,4622909,4622499	
chr9	1740957	1745328	1741826	1745013	-	HYDA2	Cre09.g396600.t1.1		1744847,1744699,1744309,1743857,1743532,1743196,1742922,1742496,1742149,1740957	1745328,1744770,1744457,1744020,1743663,1743304,1743044,1742768,1742338,1741966	Chloroplast Fe-hydrogenase (= HYDA2); corresponds to GI:18026272 [PMID: 12823545]
chr9	4625024	4631349	4625991	4631017	-	Cre09.g396624.t1.1	Cre09.g396624.t1.1		4630919,4630453,4629144,4628802,4628376,4628005,4626326,4625024	4631349,4630645,4629938,4628929,4628499,4628106,4627777,4626090	
chr9	1728553	1739846	1730333	1739599	-	PAT2	Cre09.g396650.t1.2		1739519,1738970,1738628,1738285,1738050,1737743,1736307,1735994,1735373,1735049,1734731,1734374,1734083,1733849,1733564,1733244,1731526,1731253,1730957,1730692,1728553	1739846,1739236,1738700,1738419,1738133,1737805,1736419,1736137,1735580,1735150,1734846,1734497,1734139,1733942,1733670,1733366,1731624,1731351,1731035,1730756,1730480	Putative phosphate acetyltransferase (EC 2.3.1.8); phosphotransacetylase; similarity to prokaryotic phosphate acetyltransferase (e.g., Desulfovibrio GenBank AAS975). Acclimation to changing CO2 concentrations and light intensities was studied by Yamano
chr9	4631434	4644629	4632261	4644452	-	DIV39	Cre09.g396661.t1.1		4644283,4643740,4642956,4642490,4642255,4641443,4641110,4640864,4638907,4638793,4637537,4636877,4631434	4644629,4643846,4643633,4642834,4642341,4642132,4641274,4640964,4640716,4638822,4638673,4637428,4636743	ts-lethal mutations block in S/M (PMID 25336509)
chr9	1728553	1729508	1729176	1729499	-	CSB35	Cre09.g396694.t1.1		1729415,1728553	1729508,1729299	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr9	4645300	4661671	4645911	4659350	+	Cre09.g396698.t1.1	Cre09.g396698.t1.1		4645300,4646097,4646348,4646724,4646917,4647204,4647520,4648009,4648330,4648621,4649091,4649732,4650051,4650575,4650877,4651146,4653448,4653822,4654581,4654832,4656636,4657120	4646027,4646178,4646634,4646808,4647003,4647372,4647785,4648178,4648428,4648896,4649448,4649816,4650368,4650688,4650998,4653310,4653685,4654412,4654694,4656492,4656989,4661671	
chr9	1723585	1728328	1724444	1728153	-	ACK1	Cre09.g396700.t1.2		1727981,1727477,1727053,1726857,1726497,1726125,1725813,1725479,1725205,1724946,1724632,1723585	1728328,1727811,1727200,1726907,1726572,1726206,1725843,1725627,1725282,1725002,1724718,1724474	Acetate Kinase; Acetokinase; Potential N-terminal organelle targeting sequence
chr9	4661674	4666139	4662228	4665495	-	Cre09.g396735.t1.1	Cre09.g396735.t1.1		4665691,4665316,4665094,4664703,4664109,4663759,4663151,4662712,4661674	4666139,4665570,4665130,4664771,4664234,4663817,4663361,4662962,4662379	
chr9	4661674	4666024	4662228	4665495	-	Cre09.g396735.t2.1	Cre09.g396735.t2.1		4665691,4665316,4665094,4664703,4664109,4663759,4663151,4662712,4661674	4666024,4665570,4665130,4664771,4664234,4663817,4663361,4662962,4662379	
chr9	1712533	1723538	1713457	1723091	-	CSE18	Cre09.g396750.t1.1		1723253,1722575,1722124,1721697,1721401,1720937,1720568,1720377,1720144,1719848,1719511,1719060,1718716,1718466,1718037,1717731,1717439,1717153,1716544,1715988,1715708,1715050,1714735,1714397,1714082,1712533	1723538,1723105,1722301,1721868,1721455,1721062,1720657,1720424,1720194,1720004,1719659,1719364,1718848,1718531,1718185,1717881,1717498,1717215,1717082,1716129,1715776,1715612,1714801,1714492,1714159,1713832	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr9	1712533	1723538	1713457	1723091	-	CSE18	Cre09.g396750.t2.1		1723253,1722575,1722124,1721697,1721401,1720937,1720568,1720377,1720144,1719848,1719511,1719060,1718716,1718466,1718037,1717731,1717439,1717153,1716544,1715988,1715708,1715050,1714735,1714397,1714082,1712533	1723538,1723105,1722301,1721868,1721455,1721062,1720657,1720424,1720194,1719893,1719659,1719364,1718848,1718531,1718185,1717881,1717498,1717215,1717082,1716129,1715776,1715612,1714801,1714492,1714159,1713832	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr9	1712533	1723538	1713457	1723091	-	CSE18	Cre09.g396750.t3.1		1723253,1722575,1722124,1721697,1721401,1720937,1720568,1720377,1720144,1719848,1719511,1719255,1719091,1718716,1718466,1718037,1717731,1717439,1717153,1716544,1715988,1715708,1715050,1714735,1714397,1714082,1712533	1723538,1723105,1722301,1721868,1721455,1721062,1720657,1720424,1720194,1720004,1719659,1719364,1719150,1718848,1718531,1718185,1717881,1717498,1717215,1717082,1716129,1715776,1715612,1714801,1714492,1714159,1713832	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr9	4667357	4674289	4668871	4673969	-	Cre09.g396772.t1.1	Cre09.g396772.t1.1		4673872,4673733,4673506,4673079,4672791,4672507,4672198,4671793,4671166,4670820,4667357	4674289,4673772,4673647,4673282,4672907,4672626,4672263,4671948,4671498,4670932,4670591	null-allele mutant was isolated (PMID 29743196)
chr9	1708075	1712524	1708366	1711388	+	CSE19	Cre09.g396800.t1.1		1708075,1708972,1709466,1709887,1710207,1710608,1711046	1708609,1709172,1709618,1709966,1710273,1710772,1712524	Belongs to family E of Chlamydomonadale-specific proteins, found in clusters, mostly on chromosome 8 and carrying two Ser/Pro-rich domains; function unknown but members have been found in the flagellar proteome
chr9	4678915	4680920	4679888	4680757	-	Cre09.g396809.t1.1	Cre09.g396809.t1.1		4680581,4678915	4680920,4680231	
chr9	4680975	4683620	4681461	4683364	-	Cre09.g396846.t1.1	Cre09.g396846.t1.1		4683287,4682331,4682041,4680975	4683620,4682991,4682118,4681881	
chr9	1704689	1708020	1704825	1707261	+	Cre09.g396850.t1.2	Cre09.g396850.t1.2		1704689,1705219,1705678,1706077,1706526,1707132	1705062,1705287,1705779,1706153,1706655,1708020	
chr9	4684405	4688230	4686478	4686806	-	Cre09.g396883.t1.1	Cre09.g396883.t1.1		4687959,4687559,4684405	4688230,4687752,4687178	
chr9	1699803	1704588	1700325	1704169	-	Cre09.g396900.t1.2	Cre09.g396900.t1.2		1704001,1703492,1703185,1702945,1702500,1702111,1701657,1701178,1700708,1699803	1704588,1703653,1703257,1703032,1702644,1702224,1701779,1701339,1700866,1700523	AtNUDIX19 ortholog, possibly involved in pyridine metabolism
chr9	4688351	4695312	4688612	4694639	+	Cre09.g396920.t1.1	Cre09.g396920.t1.1		4688351,4688708,4690163,4690393,4690595,4690925,4691495,4691844,4692146,4692503,4692699,4692943,4693372,4693732,4694082,4694540	4688621,4690063,4690204,4690455,4690708,4691356,4691718,4691999,4692305,4692574,4692839,4693128,4693559,4693867,4694216,4695312	
chr9	1693499	1699554	1694014	1697783	+	Cre09.g396950.t1.1	Cre09.g396950.t1.1		1693499,1694836,1695449,1695961,1696466,1696887,1697326	1694422,1695058,1695699,1696320,1696726,1697119,1699554	Conserved expressed permease of the major facilitator superfamily; probable sodium-dependent phosphate transporter
chr9	4695315	4702670	4695565	4702350	-	Cre09.g396957.t1.1	Cre09.g396957.t1.1		4701746,4698935,4698664,4697811,4697098,4695315	4702670,4701506,4698742,4698506,4697536,4697028	
chr9	4702791	4708062	4702920	4707790	+	Cre09.g396994.t1.1	Cre09.g396994.t1.1		4702791,4703159,4703339,4703764,4704040,4704418,4704674,4705060,4705490,4705728,4706318,4706585,4706851,4707257,4707649	4702962,4703219,4703439,4703816,4704147,4704477,4704853,4705237,4705522,4706117,4706413,4706656,4706969,4707446,4708062	
chr9	1671392	1690451	1671528	1689535	+	Cre09.g397000.t1.1	Cre09.g397000.t1.1		1671392,1671870,1672341,1672854,1673079,1673358,1673555,1673732,1673958,1674194,1674496,1675259,1675541,1675747,1676069,1676311,1676581,1676853,1677086,1677308,1677517,1677827,1678554,1678940,1679219,1679601,1680265,1681148,1682312,1683625,1683791,1684988,1685227,1685607,1685858,1686237,1686451,1686684,1686935,1687588,1687924,1688152,1688443,1688743,1688948,1689506	1671611,1671942,1672474,1672905,1673237,1673408,1673609,1673817,1674016,1674326,1674746,1675412,1675645,1675895,1676183,1676447,1676725,1676997,1677158,1677383,1677689,1678371,1678816,1679068,1679467,1680148,1680956,1682101,1683534,1683705,1684306,1685123,1685453,1685675,1686124,1686296,1686564,1686770,1687459,1687815,1688037,1688319,1688604,1688789,1689381,1690451	
chr9	1691156	1692978	1692561	1692763	-	Cre09.g397002.t1.1	Cre09.g397002.t1.1		1691156	1692978	
chr9	4708111	4714302	4708531	4712923	+	Cre09.g397031.t1.1	Cre09.g397031.t1.1		4708111,4708290,4708464,4708865,4709175,4709427,4709731,4710200,4710618,4710868,4711429,4711687,4711921,4712324,4712752	4708224,4708347,4708561,4708917,4709282,4709486,4709946,4710365,4710650,4711188,4711524,4711758,4712039,4712513,4714302	
chr9	1649752	1669100	1649970	1667820	+	Cre09.g397050.t1.1	Cre09.g397050.t1.1		1649752,1650665,1651269,1651561,1651840,1652037,1652214,1652440,1652677,1652805,1652979,1653743,1654025,1654235,1654558,1654800,1655070,1655343,1655578,1655799,1656011,1656335,1656972,1657426,1657705,1658084,1658807,1659546,1659847,1660870,1662357,1662508,1663224,1663459,1663835,1664085,1664468,1664637,1664987,1665268,1665954,1666314,1666535,1666795,1667049,1667220,1667788	1650096,1650798,1651320,1651719,1651890,1652091,1652299,1652498,1652743,1652813,1653229,1653896,1654129,1654383,1654672,1654936,1655214,1655487,1655650,1655874,1656183,1656855,1657291,1657554,1657953,1658694,1659105,1659707,1660659,1662197,1662437,1663089,1663359,1663679,1663903,1664351,1664527,1664750,1665073,1665870,1666205,1666427,1666702,1666947,1667095,1667668,1669100	
chr9	1669972	1671269	1670062	1670291	+	Cre09.g397052.t1.1	Cre09.g397052.t1.1		1669972	1671269	
chr9	4714305	4717470	4714755	4717302	-	Cre09.g397068.t1.1	Cre09.g397068.t1.1		4715697,4714305	4717470,4715277	
chr9	1645302	1647713	1646769	1647037	+	Cre09.g397095.t1.2	Cre09.g397095.t1.2		1645302,1646660	1645686,1647713	
chr9	1647968	1649621	1648466	1649476	-	Cre09.g397098.t1.1	Cre09.g397098.t1.1		1649355,1648735,1647968	1649621,1648761,1648597	
chr9	1640176	1645117	1640984	1644880	-	Cre09.g397100.t1.2	Cre09.g397100.t1.2		1644660,1644181,1644003,1643599,1643324,1642889,1641846,1641281,1640176	1645117,1644213,1644029,1643797,1643419,1643061,1642710,1641567,1640984	
chr9	4717525	4724110	4717845	4724073	-	Cre09.g397105.t1.1	Cre09.g397105.t1.1		4723998,4723820,4723583,4723351,4723130,4722640,4722316,4721916,4721467,4721139,4720524,4720083,4719610,4718946,4718371,4717525	4724110,4723874,4723620,4723416,4723182,4722747,4722375,4722062,4721605,4721231,4720739,4720178,4719687,4719064,4718590,4717989	
chr9	4724250	4744100	4724897	4743883	-	Cre09.g397142.t1.1	Cre09.g397142.t1.1		4742551,4741670,4741337,4740878,4740442,4739743,4739271,4738657,4738313,4737645,4737340,4736992,4736492,4736166,4735505,4735057,4734708,4734196,4733560,4732845,4732379,4732040,4731687,4731343,4730790,4730270,4729751,4729444,4728914,4728179,4727947,4727610,4724250	4744100,4741925,4741470,4741065,4740492,4739926,4739345,4738785,4738378,4737830,4737420,4737089,4736582,4736228,4735619,4735153,4734758,4734277,4733748,4732898,4732483,4732134,4731753,4731447,4730919,4730529,4729925,4729505,4729051,4728660,4728073,4727747,4726514	Transient potential receptor channel
chr9	1635782	1640132	1636277	1639535	+	Cre09.g397150.t1.1	Cre09.g397150.t1.1		1635782,1637188,1637403,1637705,1639017	1637042,1637262,1637486,1638821,1640132	
chr9	4744201	4749539	4744402	4749140	+	OPR13	Cre09.g397179.t1.1		4744201,4744563,4745198,4745495,4746432,4747028,4747355,4747973	4744477,4744816,4745345,4745632,4746722,4747144,4747480,4749539	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr9	1630379	1635681	1630798	1635489	-	CCT6	Cre09.g397200.t1.2		1635291,1634767,1634538,1633874,1633043,1632571,1632240,1631850,1631612,1631285,1630379	1635681,1634833,1634635,1634125,1633179,1632703,1632446,1632033,1631700,1631371,1630990	T-complex protein 1, zeta subunit (TCP-1-zeta) (CCT-zeta) (TCPF); subunit of cytosolic chaperonin complex; ts-lethal mutation block at S/M (29743196)
chr9	4749601	4757454	4749947	4756570	+	Cre09.g397216.t1.1	Cre09.g397216.t1.1		4749601,4750101,4750544,4750941,4751288,4751742,4752255,4752535,4753024,4753436,4753920,4754386,4755249,4755645,4756145,4756492	4749998,4750164,4750647,4750993,4751395,4751804,4752331,4752604,4753168,4753516,4754216,4754592,4755367,4755882,4756207,4757454	null-allele mutant was isolated (PMID 29743196)
chr9	1623842	1629056	1624139	1627533	+	FAD5A	Cre09.g397250.t1.2		1623842,1625025,1625321,1625631,1626151,1626516,1626811,1627066,1627407	1624291,1625166,1625431,1625864,1626276,1626638,1626915,1627191,1629056	MGDG specific palmitate delta-7 desaturase
chr9	4757501	4762082	4757564	4761745	+	Cre09.g397253.t1.1	Cre09.g397253.t1.1		4757501,4758055,4758403,4758834,4759558,4759945,4760587,4760999,4761416,4761655	4757808,4758134,4758538,4759148,4759661,4760196,4760805,4761214,4761541,4762082	
chr9	4762110	4765390	4762814	4765251	-	Cre09.g397290.t1.1	Cre09.g397290.t1.1		4763613,4762110	4765390,4763318	
chr9	1617062	1623216	1617207	1622677	+	Cre09.g397300.t1.2	Cre09.g397300.t1.2		1617062,1617396,1617727,1618011,1618545,1618918,1619409,1620187,1620811,1621064,1621509,1621893,1622511	1617276,1617590,1617877,1618288,1618661,1619278,1619974,1620579,1620920,1621189,1621620,1622227,1623216	
chr9	4765725	4806170	4766507	4805942	-	Cre09.g397327.t1.1	Cre09.g397327.t1.1		4805716,4805372,4804888,4804282,4803860,4803275,4802941,4802498,4802023,4800666,4800073,4799534,4799182,4798562,4798167,4796444,4795981,4795572,4794593,4794311,4793997,4793522,4793130,4792465,4792139,4791348,4790298,4788817,4788404,4787156,4785786,4785493,4785189,4784777,4784386,4783292,4782441,4781308,4780956,4780062,4779866,4779461,4779053,4778596,4778292,4777735,4777195,4775464,4774873,4774063,4773439,4772618,4771189,4769952,4769487,4769043,4768626,4768234,4767728,4767223,4766844,4765725	4806170,4805430,4804980,4804329,4803931,4803564,4803019,4802668,4802172,4800851,4800337,4799749,4799375,4798850,4798287,4796708,4796256,4795778,4795078,4794363,4794131,4793760,4793357,4793018,4792243,4791925,4790926,4789467,4788613,4788056,4786932,4785636,4785291,4784880,4784439,4784085,4783062,4782130,4781076,4780486,4779900,4779586,4779111,4778667,4778349,4778124,4777536,4777038,4775268,4774635,4773831,4773236,4772446,4770665,4769741,4769152,4768726,4768431,4768126,4767483,4767029,4766645	
chr9	1606736	1616561	1607374	1616428	-	XPD3	Cre09.g397350.t1.1		1615729,1615458,1615032,1614686,1614394,1614040,1613791,1613024,1612679,1612249,1611766,1611520,1611034,1610736,1610421,1610180,1606736	1616561,1615613,1615160,1614765,1614505,1614144,1613899,1613534,1612831,1612345,1611885,1611591,1611186,1610822,1610543,1610299,1610032	Rad3-like ATP-dependent DNA helicase, probably mitochondrial; similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).Similar to Arabidopsis At1g21730; null-allele mutant was isolated (PMID 29743196)
chr9	4807515	4811740	4807748	4811528	-	Cre09.g397364.t1.1	Cre09.g397364.t1.1		4811521,4810834,4810400,4807515	4811740,4811362,4810622,4810226	
chr9	1603812	1606723	1603852	1606128	+	Cre09.g397400.t1.2	Cre09.g397400.t1.2		1603812,1604280,1604752,1605684,1605993	1604007,1604484,1605264,1605806,1606723	Possble protochlorophyllide reductase or retinol/estradiol 17beta dehydrogenase
chr9	4811861	4814863	4811965	4814382	+	Cre09.g397401.t1.1	Cre09.g397401.t1.1		4811861,4813731	4813495,4814863	
chr9	4816151	4820022	4816352	4818858	+	Cre09.g397438.t1.1	Cre09.g397438.t1.1		4816151,4818180	4817984,4820022	
chr9	1589346	1600751	1589969	1600532	-	Cre09.g397450.t1.1	Cre09.g397450.t1.1		1600342,1600189,1599137,1594212,1589346	1600751,1600253,1600025,1598995,1594094	
chr9	4820421	4828432	4820922	4825520	+	Cre09.g397475.t1.1	Cre09.g397475.t1.1		4820421,4821970,4822415	4821143,4822045,4828432	null-allele mutant was isolated (PMID 29743196)
chr9	1588132	1589233	1588177	1589059	+	Cre09.g397500.t1.2	Cre09.g397500.t1.2		1588132,1588506,1588962	1588184,1588752,1589233	
chr9	4829191	4835010	4829531	4833764	+	Cre09.g397512.t1.1	Cre09.g397512.t1.1		4829191,4829775,4830547,4831042,4831480,4831767,4832357,4832776,4833290	4829553,4829862,4830653,4831167,4831604,4831868,4832458,4832976,4835010	
chr9	4835161	4842266	4835494	4840713	+	Cre09.g397549.t1.1	Cre09.g397549.t1.1		4835161,4837866,4838530,4839021,4839445,4840401	4837480,4838171,4838627,4839124,4839551,4842266	
chr9	1577176	1587991	1579480	1587900	-	Cre09.g397550.t1.1	Cre09.g397550.t1.1		1587767,1587564,1586982,1581010,1579871,1577176	1587991,1587625,1587342,1586866,1580864,1579660	
chr9	4843161	4859141	4843522	4856148	+	Cre09.g397586.t1.1	Cre09.g397586.t1.1		4843161,4843879,4844397,4845360,4846058,4846398,4848033,4848636,4850234,4850844,4851884,4852574,4853102,4853834,4854088,4856132	4843681,4844009,4844892,4845680,4846126,4847674,4848116,4850007,4850551,4851659,4852283,4852671,4853260,4853883,4855632,4859141	
chr9	4859324	4863310	4860467	4862818	-	Cre09.g397623.t1.1	Cre09.g397623.t1.1		4862749,4862436,4861817,4861466,4861081,4860765,4859324	4863310,4862478,4862133,4861546,4861150,4860825,4860489	
chr9	4864244	4867680	4865256	4867341	-	Cre09.g397660.t1.1	Cre09.g397660.t1.1		4867269,4867121,4866503,4866214,4865904,4865593,4864244	4867680,4867169,4866959,4866289,4865997,4865659,4865329	
chr9	4867855	4872029	4868626	4872006	-	RPL4	Cre09.g397697.t1.1		4871688,4871274,4870984,4869696,4869296,4868913,4867855	4872029,4871393,4871125,4869949,4869463,4869056,4868713	Component of cytosolic 80S ribosome and 60S large subunit
chr9	1551112	1562743	1551560	1561294	+	Cre09.g397700.t1.1	Cre09.g397700.t1.1		1551112,1551833,1552082,1552820,1559596,1561213	1551750,1551894,1552553,1559474,1561105,1562743	
chr9	1562990	1564651	1563700	1563866	-	Cre09.g397701.t1.1	Cre09.g397701.t1.1		1564410,1562990	1564651,1564037	
chr9	1564946	1576601	1565913	1575693	-	Cre09.g397702.t1.1	Cre09.g397702.t1.1		1575824,1575396,1574790,1574605,1573888,1566133,1564946	1576601,1575716,1574898,1574687,1574451,1573743,1565988	
chr9	4872845	4880100	4873778	4880064	-	Cre09.g397734.t1.1	Cre09.g397734.t1.1		4880022,4879880,4879694,4879386,4878843,4878314,4878087,4877457,4876965,4876591,4876117,4875623,4875202,4874656,4874176,4872845	4880100,4879938,4879796,4879438,4878897,4878366,4878146,4877714,4877115,4876623,4876209,4875838,4875414,4874771,4874365,4873919	
chr9	4880551	4894842	4880827	4894068	+	OPR117	Cre09.g397771.t1.1		4880551,4882350,4883132,4883546,4883894,4884442,4885918,4889423,4889968,4892702,4893036	4881979,4882765,4883197,4883612,4884066,4885852,4889274,4889599,4892523,4892908,4894842	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein
chr9	1538012	1540021	1538269	1538591	+	Cre09.g397800.t1.2	Cre09.g397800.t1.2		1538012,1538237,1538441	1538172,1538311,1540021	
chr9	1540132	1549813	1540535	1548353	+	Cre09.g397803.t1.1	Cre09.g397803.t1.1		1540132,1540844,1541019,1541462,1541736,1547675	1540686,1540875,1541324,1541573,1547512,1549813	
chr9	4894935	4899830	4895899	4899478	-	Cre09.g397808.t1.1	Cre09.g397808.t1.1		4899339,4898940,4898622,4898366,4898000,4896376,4896025,4894935	4899830,4899022,4898669,4898443,4898068,4897686,4896256,4895899	
chr9	4900925	4907332	4901082	4907330	-	Cre09.g397845.t1.1	Cre09.g397845.t1.1		4907059,4906374,4905924,4905518,4905096,4904707,4903745,4903219,4902742,4901799,4900925	4907332,4906522,4906157,4905624,4905291,4904766,4904320,4903316,4902897,4902342,4901505	
chr9	1530039	1537130	1530820	1536037	+	Cre09.g397850.t1.2	Cre09.g397850.t1.2		1530039,1532146,1532491,1532865,1533885,1534186,1534676,1535085,1535558	1530970,1532289,1532691,1533678,1534062,1534450,1534854,1535269,1537130	
chr9	4962346	4971182	4962398	4970588	+	Cre09.g397882.t1.1	Cre09.g397882.t1.1		4962346,4963172,4963594,4964133,4964658,4965126,4965580,4967122,4967715,4968643	4962888,4963227,4963680,4964201,4964723,4965272,4966653,4967241,4968292,4971182	
chr9	1522556	1529918	1523148	1529409	+	Cre09.g397900.t1.2	Cre09.g397900.t1.2		1522556,1523131,1523489,1523972,1524322,1524899,1525320,1525766,1526168,1526475,1526800,1527223,1527596,1528008,1528246,1528452,1528834,1529168	1522811,1523316,1523651,1524075,1524436,1524978,1525411,1525877,1526248,1526576,1526937,1527312,1527711,1528085,1528315,1528576,1528926,1529918	
chr9	4971231	4974084	4971258	4972427	+	Cre09.g397919.t1.1	Cre09.g397919.t1.1		4971231,4972145	4971786,4974084	
chr9	1520263	1522458	1521187	1522425	-	Cre09.g397950.t1.1	Cre09.g397950.t1.1		1522202,1521644,1520263	1522458,1521790,1521384	
chr9	4974095	4982590	4974586	4982539	-	ELG40	Cre09.g397956.t1.1		4982461,4982325,4981960,4981400,4980796,4980173,4979518,4979199,4978766,4978008,4977607,4977153,4976583,4976150,4975839,4974095	4982590,4982386,4982096,4981622,4980889,4980273,4979578,4979303,4978870,4978109,4977689,4977195,4976618,4976273,4975938,4975502	Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]
chr9	4982645	4989540	4983494	4989183	-	FAP201	Cre09.g397993.t1.1		4989356,4989177,4988836,4988257,4987535,4987089,4986436,4985948,4985834,4985425,4984835,4984478,4982645	4989540,4989249,4988946,4988361,4987599,4987200,4986474,4986052,4985845,4985503,4984970,4984562,4983647	
chr9	4982645	4989540	4983494	4989183	-	FAP201	Cre09.g397993.t2.1		4989356,4989177,4988836,4988257,4987535,4987089,4986436,4985948,4985425,4984835,4984478,4982645	4989540,4989249,4988946,4988361,4987599,4987200,4986474,4986052,4985503,4984970,4984562,4983647	
chr9	4989641	4999852	4989877	4997989	+	Cre09.g398030.t1.1	Cre09.g398030.t1.1		4989641,4990475,4991331,4992326,4992776,4994661,4995189,4995483,4996706,4997046,4997403,4997896	4990139,4990958,4992054,4992554,4994328,4994780,4995269,4996443,4996826,4997149,4997473,4999852	
chr9	1497050	1510868	1498041	1510778	-	Cre09.g398050.t1.1	Cre09.g398050.t1.1		1510603,1510442,1509650,1509346,1499960,1498505,1497050	1510868,1510509,1510177,1509505,1509236,1499807,1498308	
chr9	1510985	1517078	1511882	1516878	-	Cre09.g398051.t1.1	Cre09.g398051.t1.1		1517020,1515554,1510985	1517078,1516894,1515484	
chr9	5005900	5014305	5006823	5014088	-	FKB62	Cre09.g398067.t1.1		5014015,5013859,5012979,5012625,5012029,5011670,5011068,5010772,5010359,5009978,5009595,5009267,5008969,5008358,5008004,5007522,5005900	5014305,5013923,5013057,5012711,5012171,5011787,5011226,5010860,5010467,5010057,5009699,5009347,5009042,5008469,5008087,5007611,5007087	Contains 3 N-terminal FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin) domains and C-terminal TPR repeats, probably nuclear-localized  [PMID: 15701785]; orthologue of AT3G54010 (PASTICCINO 1)
chr9	1476029	1488384	1476589	1486951	+	Cre09.g398100.t1.1	Cre09.g398100.t1.1		1476029,1476296,1477301,1478057,1478235,1478696,1479002,1479359,1479651,1480524,1481339,1481636,1481809,1482019,1482346,1482646,1482865,1483267,1484012,1484350,1484948,1485223,1485509,1485768	1476178,1477064,1477836,1478093,1478353,1478833,1479130,1479500,1480358,1481144,1481463,1481661,1481828,1482080,1482415,1482715,1483044,1483873,1484089,1484731,1485040,1485347,1485606,1488384	
chr9	5014666	5022110	5015235	5019338	+	Cre09.g398104.t1.1	Cre09.g398104.t1.1		5014666,5015016,5015840,5016337,5016624,5017198,5017702,5018177,5018647,5019173	5014906,5015321,5015903,5016414,5016680,5017328,5017825,5018251,5018739,5022110	
chr9	5023890	5031615	5024207	5031273	-	Cre09.g398141.t1.1	Cre09.g398141.t1.1		5023890	5031615	null-allele mutant was isolated (PMID 29743196)
chr9	1472239	1475860	1472387	1475049	+	EYA1	Cre09.g398150.t1.1		1472239,1473785,1474569	1473650,1474357,1475860	EYA domain protein, transcription factor and metal-dependent Tyrosine phosphatase, belonging to Haloacid dehalogenase superfamily; in animals, mutation results in eyes being absent; has homologs in all algae, including those without eyespot
chr9	5035466	5036029	5035681	5035859	+	Cre09.g398178.t1.1	Cre09.g398178.t1.1		5035466	5036029	
chr9	1464293	1472128	1465280	1471890	-	Cre09.g398200.t1.2	Cre09.g398200.t1.2		1471823,1471523,1471167,1470902,1470541,1470223,1469860,1469637,1469259,1468895,1468402,1467994,1467652,1467129,1466896,1466528,1465593,1464293	1472128,1471597,1471306,1470984,1470613,1470303,1469955,1469695,1469415,1468975,1468530,1468120,1467850,1467273,1466943,1466599,1466321,1465280	
chr9	1464293	1472128	1465280	1471890	-	Cre09.g398200.t2.1	Cre09.g398200.t2.1		1471823,1471523,1471167,1470902,1470541,1470223,1469860,1469637,1469259,1468895,1468402,1467994,1467652,1467129,1466896,1466528,1465593,1464293	1472128,1471597,1471306,1470984,1470613,1470303,1469955,1469695,1469415,1468975,1468530,1468120,1467847,1467273,1466943,1466599,1466321,1465280	
chr9	5036060	5038765	5036869	5038739	-	Cre09.g398215.t1.1	Cre09.g398215.t1.1		5037870,5037360,5036060	5038765,5037483,5037007	
chr9	1457793	1462368	1458227	1461996	-	Cre09.g398250.t1.1	Cre09.g398250.t1.1		1461981,1461425,1461112,1460804,1460536,1460167,1459856,1459356,1459024,1458772,1458438,1457793	1462368,1461822,1461173,1460975,1460687,1460359,1459914,1459736,1459195,1458911,1458621,1458345	
chr9	5038866	5043407	5038931	5042615	+	Cre09.g398252.t1.1	Cre09.g398252.t1.1		5038866,5039452,5040002,5040536,5040963,5041769,5042165,5042439	5039143,5039579,5040122,5040644,5041075,5041859,5042219,5043407	
chr9	5043586	5049407	5043731	5048054	+	Cre09.g398289.t1.1	Cre09.g398289.t1.1		5043586,5044031,5044756,5045625,5046125,5046678,5047164,5047866	5043951,5044169,5044825,5045696,5046224,5046782,5047268,5049407	
chr9	1454549	1457790	1454682	1457756	+	Cre09.g398300.t1.1	Cre09.g398300.t1.1		1454549,1455045,1455288,1455471,1455871,1456208,1456512,1456867,1457074,1457237,1457474,1457698	1454973,1455172,1455376,1455621,1455991,1456352,1456597,1456950,1457115,1457338,1457607,1457790	
chr9	5050310	5052165	5051064	5052087	-	Cre09.g398326.t1.1	Cre09.g398326.t1.1		5051904,5050310	5052165,5051769	
chr9	1446312	1454418	1446600	1454278	-	Cre09.g398350.t1.2	Cre09.g398350.t1.2		1454170,1453855,1453516,1453116,1452956,1452620,1452316,1452092,1451895,1451661,1451342,1451085,1450923,1450717,1450490,1450230,1449983,1449727,1449537,1449278,1448934,1448695,1448251,1448044,1447843,1447511,1447136,1446312	1454418,1454049,1453590,1453280,1453028,1452827,1452481,1452127,1452000,1451748,1451466,1451224,1450957,1450792,1450560,1450341,1450070,1449805,1449593,1449365,1449070,1448794,1448439,1448116,1447912,1447649,1447309,1446783	
chr9	5052250	5053625	5052633	5053362	-	Cre09.g398363.t1.1	Cre09.g398363.t1.1		5053250,5052898,5052250	5053625,5053039,5052664	
chr9	1436049	1446304	1436221	1445867	+	Cre09.g398400.t1.2	Cre09.g398400.t1.2		1436049,1436564,1437359,1437838,1438379,1438829,1439150,1439831,1440318,1440929,1441668,1442172,1442675,1443461,1443921,1444272,1444439,1444637,1444868,1445093,1445392,1445682	1436369,1436972,1437660,1438190,1438653,1439064,1439671,1440072,1440773,1441438,1441949,1442506,1442783,1443757,1444135,1444365,1444529,1444763,1444909,1445213,1445482,1446304	C-terminal 350 AA similar to transient receptor potential Ca2+ channel, involved in Ca2+ homeostasis, but N-terminal region has no similarity in databases; additional transmembrane helix at pos 1189-1211; member of a family of at least 8 TRP proteins
chr9	5054540	5058005	5056888	5057908	-	Cre09.g398401.t1.1	Cre09.g398401.t1.1		5057725,5054540	5058005,5057590	
chr9	5058090	5061185	5058843	5060767	-	Cre09.g398438.t1.1	Cre09.g398438.t1.1		5060756,5060299,5059933,5059054,5058090	5061185,5060431,5060010,5059513,5058843	
chr9	1432719	1434759	1432872	1434376	+	Cre09.g398450.t1.1	Cre09.g398450.t1.1		1432719,1434110,1434316	1433629,1434135,1434759	
chr9	5061610	5063655	5062516	5063539	-	Cre09.g398475.t1.1	Cre09.g398475.t1.1		5063356,5061610	5063655,5063221	
chr9	1429073	1432568	1429733	1432351	-	Cre09.g398500.t1.1	Cre09.g398500.t1.1		1432474,1431894,1431286,1431031,1430311,1429073	1432568,1432386,1431454,1431167,1430915,1430177	
chr9	5063730	5083495	5064474	5083384	-	Cre09.g398512.t1.1	Cre09.g398512.t1.1		5083201,5082068,5080397,5078610,5074631,5072015,5070338,5067310,5065836,5063730	5083495,5083066,5081151,5079361,5075202,5072766,5071089,5068049,5066590,5064474	
chr9	5078390	5083495	5079361	5083384	-	Cre09.g398512.t2.1	Cre09.g398512.t2.1		5083201,5082068,5080397,5078390	5083495,5083066,5081151,5079361	
chr9	5083580	5089265	5084314	5089150	-	Cre09.g398549.t1.1	Cre09.g398549.t1.1		5088686,5088023,5087020,5086269,5083580	5089265,5088155,5087252,5086922,5084314	
chr9	1404023	1410328	1404531	1410200	-	Cre09.g398550.t1.2	Cre09.g398550.t1.2		1409936,1408885,1408710,1408413,1408184,1407913,1407654,1407451,1406688,1406436,1406156,1405863,1405650,1405381,1405210,1404950,1404023	1410328,1409796,1408760,1408532,1408289,1408031,1407790,1407523,1407314,1406535,1406232,1406020,1405698,1405458,1405266,1405097,1404806	
chr9	1418279	1419473	1418490	1418873	+	Cre09.g398554.t1.1	Cre09.g398554.t1.1		1418279,1418809	1418594,1419473	
chr9	1421809	1423017	1422034	1422417	+	Cre09.g398555.t1.1	Cre09.g398555.t1.1		1421809,1422353	1422138,1423017	
chr9	1427459	1429070	1428718	1428884	+	Cre09.g398556.t1.1	Cre09.g398556.t1.1		1427459,1428278,1428564	1428019,1428347,1429070	
chr9	5089390	5095285	5091568	5095243	-	Cre09.g398586.t1.1	Cre09.g398586.t1.1		5095215,5094702,5094395,5093734,5093030,5092405,5089390	5095285,5094834,5094414,5094231,5093148,5092551,5092270	
chr9	5095406	5097827	5095734	5097226	+	Cre09.g398623.t1.1	Cre09.g398623.t1.1		5095406,5096272,5097193	5095745,5096407,5097827	
chr9	1347519	1354860	1347668	1354502	+	Cre09.g398650.t1.2	Cre09.g398650.t1.2		1347519,1348098,1348433,1348961,1349278,1349618,1349991,1350404,1350710,1351271,1351625,1352164,1352644,1353022,1353254,1353581,1354007,1354390	1347833,1348253,1348504,1349071,1349430,1349706,1350187,1350510,1350841,1351456,1351899,1352344,1352709,1353084,1353366,1353695,1354107,1354860	null-allele mutant was isolated (PMID 29743196)
chr9	1357673	1359458	1358612	1358805	-	Cre09.g398652.t1.1	Cre09.g398652.t1.1		1357673	1359458	
chr9	5098006	5100517	5098139	5098548	+	Cre09.g398660.t1.1	Cre09.g398660.t1.1		5098006	5100517	
chr9	5100716	5101617	5100823	5101271	+	Cre09.g398697.t1.1	Cre09.g398697.t1.1		5100716,5101169	5101006,5101617	
chr9	1336542	1341913	1336683	1341301	+	CPLD27	Cre09.g398700.t1.2		1336542,1337242,1337906,1338508,1339351,1339670,1340135,1340621,1340924,1341231	1336845,1337352,1338014,1338698,1339467,1339763,1340228,1340693,1341015,1341913	Cyclopropane-fatty-acyl-phospholipid synthase.  Plant-lineage-and-diatoms conserved expressed protein related to putative coclaurine N-methyltransferase; this protein is found in the eyespot proteome.  Previously annotated as CPLD27
chr9	1341916	1343301	1342389	1343057	-	Cre09.g398702.t1.1	Cre09.g398702.t1.1		1343038,1341916	1343301,1342649	
chr9	5102766	5104957	5102862	5104692	+	Cre09.g398734.t1.1	Cre09.g398734.t1.1		5102766,5103112,5103739,5103990	5102878,5103230,5103855,5104957	
chr9	1327706	1335241	1329201	1334292	-	Cre09.g398750.t1.2	Cre09.g398750.t1.2		1334668,1334466,1333510,1333110,1332473,1331847,1331462,1331063,1330658,1330256,1329808,1327706	1335241,1334557,1334309,1333236,1332985,1332260,1331503,1331215,1330693,1330342,1329895,1329575	null-allele passenger mutation was isolated (PMID 29743196)
chr9	5111316	5112737	5111446	5112469	+	Cre09.g398771.t1.1	Cre09.g398771.t1.1		5111316,5111764	5111629,5112737	
chr9	1326132	1327651	1326652	1327648	-	CSB36	Cre09.g398800.t1.2		1327120,1326891,1326132	1327651,1327001,1326775	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr9	5113530	5126415	5113938	5126230	-	Cre09.g398808.t1.1	Cre09.g398808.t1.1		5126170,5126000,5125840,5125423,5125165,5124891,5123927,5123431,5123095,5122721,5122161,5121009,5120579,5120245,5119846,5119356,5118894,5118358,5117808,5117408,5116725,5116279,5115477,5114941,5114479,5113530	5126415,5126105,5125877,5125572,5125272,5125044,5124708,5123520,5123217,5122945,5122490,5121944,5120776,5120334,5119929,5119615,5118996,5118474,5118056,5117563,5116841,5116443,5116064,5115022,5114636,5114088	
chr9	5127226	5130062	5127620	5129174	+	Cre09.g398845.t1.1	Cre09.g398845.t1.1		5127226,5127964,5128347,5128820,5129064	5127682,5128075,5128444,5128884,5130062	
chr9	1320386	1325791	1321213	1325684	-	Cre09.g398850.t1.2	Cre09.g398850.t1.2		1325618,1325486,1325364,1325210,1325049,1324840,1324236,1323954,1323684,1323304,1322877,1322479,1322131,1321757,1321514,1320386	1325791,1325549,1325420,1325274,1325114,1324903,1324657,1324063,1323724,1323478,1322986,1322563,1322182,1321831,1321600,1321318	
chr9	5130206	5134760	5130626	5134146	+	DLI1	Cre09.g398882.t1.1		5130206,5130872,5131170,5131681,5132059,5132385,5132767,5133103,5133404,5133694,5133975	5130726,5130966,5131337,5131764,5132189,5132465,5132925,5133263,5133478,5133752,5134760	
chr9	1317412	1320328	1317764	1319733	+	GP1	Cre09.g398900.t1.1		1317412,1317710,1319229,1319447	1317527,1319069,1319305,1320328	Vegetative cell wall protein gp1, chaotrope-soluble [PMID: 11258910, Genbank entry AF309494]
chr9	5135016	5138927	5135202	5138630	+	Cre09.g398919.t1.1	Cre09.g398919.t1.1		5135016,5135373,5135561,5135978	5135242,5135430,5135789,5138927	
chr9	1311952	1313353	1312138	1313122	+	CSB37	Cre09.g398950.t1.2		1311952,1312773,1312999	1312654,1312883,1313353	CSB family member have highly similar sequences and show various degrees of N-terminal truncation; C-terminal part similar to transposase DNA-binding domain; is probably part of a (truncated) repeat element
chr9	5138935	5146185	5139531	5145843	-	Cre09.g398956.t1.1	Cre09.g398956.t1.1		5145736,5145392,5145040,5143166,5141537,5138935	5146185,5145471,5145209,5144846,5143096,5141120	
chr9	301133	302586	301615	301989	+	Cre09.g398983.t1.1	Cre09.g398983.t1.1		301133,301984	301826,302586	
chr9	5146346	5150707	5146451	5149557	+	Cre09.g398993.t1.1	Cre09.g398993.t1.1		5146346,5147111,5147442,5147764,5148005,5148267,5148542,5148840,5149109,5149338	5146612,5147337,5147592,5147863,5148059,5148334,5148699,5148956,5149151,5150707	4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27); (4HPPD) (HPD) (HPPDase)
chr9	1307036	1311601	1307598	1311538	-	Cre09.g399000.t1.1	Cre09.g399000.t1.1		1311529,1310975,1310709,1310533,1310168,1309829,1309516,1309324,1308800,1308475,1308255,1307939,1307036	1311601,1311058,1310747,1310602,1310254,1309947,1309572,1309434,1309007,1308569,1308287,1307995,1307637	possibly 3-oxoacyl-[acyl-carrier-protein] reductase
chr9	5150756	5154417	5150870	5153850	+	Cre09.g399030.t1.1	Cre09.g399030.t1.1		5150756,5151345,5151676,5152056,5152399,5152538,5152831,5153129,5153396,5153631	5151031,5151571,5151826,5152155,5152453,5152605,5152988,5153245,5153438,5154417	4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase)
chr9	1304052	1307023	1304303	1306613	+	Cre09.g399050.t1.1	Cre09.g399050.t1.1		1304052,1304524,1305080,1305445,1305911,1306375	1304327,1304837,1305230,1305579,1306026,1307023	
chr9	5154883	5161755	5155382	5159759	+	Cre09.g399067.t1.1	Cre09.g399067.t1.1		5154883,5155346,5155661,5155965,5156327,5156681,5157105,5157319,5159618	5155185,5155582,5155733,5156041,5156354,5156782,5157152,5159349,5161755	
chr9	5154883	5161755	5155382	5159759	+	Cre09.g399067.t2.1	Cre09.g399067.t2.1		5154883,5155346,5155661,5155965,5156327,5156681,5157108,5157319,5159618	5155185,5155582,5155733,5156041,5156354,5156782,5157152,5159349,5161755	
chr9	1300672	1303963	1300960	1303531	+	Cre09.g399073.t1.2	Cre09.g399073.t1.2		1300672,1301673,1302086,1302500,1302965,1303353	1301128,1301869,1302236,1302634,1303080,1303963	
chr9	1293180	1300521	1293748	1300258	-	OPR42	Cre09.g399100.t1.1		1300163,1299996,1298458,1297691,1296656,1296184,1294915,1293180	1300521,1300047,1299900,1298224,1297378,1296411,1296069,1294771	octotricoPeptide (octatricoPeptide) Repeat (OPR) Protein; CDS should be extended by 38 codons at 5'-end: MLPSAGSGLARTGLASPASSALSWVQSQHVVPLPPHHR
chr9	5161903	5167086	5162168	5165704	+	Cre09.g399104.t1.1	Cre09.g399104.t1.1		5161903,5162743,5163020,5163399,5163810,5164370,5164924,5165374	5162343,5162775,5163061,5163679,5163903,5164541,5165173,5167086	
chr9	5167123	5173472	5167850	5172611	-	Cre09.g399141.t1.1	Cre09.g399141.t1.1		5173262,5172570,5172116,5171411,5171015,5170369,5169957,5169610,5169190,5168792,5168258,5167123	5173472,5172671,5172278,5171548,5171117,5170554,5170126,5169757,5169275,5168888,5168339,5167941	
chr9	1287007	1292421	1287602	1292087	-	Cre09.g399150.t1.2	Cre09.g399150.t1.2		1292037,1291038,1290523,1290125,1289350,1289079,1288730,1288367,1288018,1287007	1292421,1291861,1290612,1290316,1289810,1289138,1288785,1288457,1288121,1287795	
chr9	5173653	5179102	5174086	5178991	-	CSN5	Cre09.g399178.t1.1		5178827,5178470,5178077,5177855,5177404,5176464,5175965,5175425,5174965,5174508,5173653	5179102,5178536,5178178,5177899,5177493,5176558,5176108,5175515,5175032,5174649,5174200	Similar to COP signalosome subunit CSN5
chr9	1282482	1286993	1282809	1286757	+	Cre09.g399200.t1.2	Cre09.g399200.t1.2		1282482,1283376,1283683,1284086,1284406,1284804,1284943,1285261,1285687,1286029,1286383,1286718	1282812,1283414,1283752,1284172,1284524,1284860,1285053,1285471,1285781,1286061,1286439,1286993	possibly 3-oxoacyl-[acyl-carrier-protein] reductase; null-allele mutant was isolated (PMID 29743196)
chr9	5179233	5189974	5179450	5189618	+	FAP341	Cre09.g399215.t1.1		5179233,5179754,5180881,5181642,5182093,5182599,5183269,5183720,5184176,5184478,5184821,5185254,5185588,5186036,5186415,5186879,5187296,5187846,5188227,5188635,5189204	5179589,5180502,5181045,5181803,5182245,5182771,5183365,5183899,5184259,5184548,5184939,5185467,5185717,5186106,5186567,5187036,5187438,5188004,5188348,5189049,5189974	
chr9	1279822	1282435	1279993	1282063	+	KIR1	Cre09.g399250.t1.2		1279822,1280394,1280792,1281159,1281718,1282006	1280210,1280536,1280833,1281248,1281792,1282435	Related to a series of bacterial genes among which is a putative Ketosteroid isomerase-related protein of Ralstonia; however, it is impossible to find a similarity with the well-characterized delta5-3-ketosteroid isomerase of Pseudomonas putida or Comamonas testosteroni, so this may be a case of erroneous annotation in Ralstonia that spread into COG; is probably targeted to the thylakoid lumen (based on alignment and RR motif), like the related gene KIR2, the cTP is very similar to that of PSBP, PSBQ, HIS5 and ULP1
chr9	5190023	5195332	5190699	5195041	+	Cre09.g399252.t1.1	Cre09.g399252.t1.1		5190023,5191501,5191941,5192251,5192594,5192951,5193316,5193655,5194059,5194353,5194698	5191353,5191597,5192070,5192367,5192740,5193005,5193455,5193742,5194148,5194456,5195332	
chr9	5195633	5203719	5196111	5201663	+	Cre09.g399289.t1.1	Cre09.g399289.t1.1		5195633,5196637,5197026,5197400,5197730,5198031,5199047,5199556,5200116,5200417,5200769	5196153,5196811,5197171,5197539,5197835,5198697,5199351,5199823,5200180,5200557,5203719	
chr9	1276182	1279707	1276307	1279003	+	FKB17-1	Cre09.g399300.t1.2		1276182,1276579,1277215,1277768,1278273,1278922	1276428,1276677,1277264,1277860,1278446,1279707	FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Immunophilin); possibly targeted to thylakoid lumen (presence of a RR motif); [PMID: 15701785]
chr9	5204063	5208112	5204941	5207932	-	MCP3	Cre09.g399326.t1.1		5207845,5207620,5207391,5207006,5206569,5205998,5205714,5205312,5204063	5208112,5207666,5207500,5207169,5206719,5206070,5205772,5205475,5205007	
chr9	1269748	1275941	1272608	1275420	-	Cre09.g399350.t1.1	Cre09.g399350.t1.1		1275387,1274413,1269748	1275941,1275275,1274238	
chr9	5208263	5215052	5208790	5214062	+	Cre09.g399363.t1.1	Cre09.g399363.t1.1		5208263	5215052	
chr9	1258513	1269209	1260275	1269009	-	FAP199	Cre09.g399400.t1.1		1268996,1268217,1267720,1265730,1265272,1264877,1264443,1263974,1263534,1263056,1262615,1262324,1261849,1261552,1258513	1269209,1268573,1267857,1265838,1265511,1265005,1264685,1264093,1263776,1263184,1262857,1262509,1262183,1261630,1261299	Putative triacylglycerol lipase
chr9	1258513	1269209	1259225	1269009	-	FAP199	Cre09.g399400.t2.1		1268996,1268217,1267720,1265730,1265272,1264877,1264443,1263974,1263534,1263056,1262615,1262324,1261849,1261552,1259485,1258513	1269209,1268573,1267857,1265838,1265511,1265005,1264685,1264093,1263776,1263184,1262857,1262509,1262183,1261630,1261299,1259225	Putative triacylglycerol lipase
chr9	5215453	5223494	5215866	5223069	+	Cre09.g399402.t1.1	Cre09.g399402.t1.1		5215453,5215839,5216061,5216271,5216807,5217052,5217305,5217492,5217854,5218110,5218468,5218720,5218990,5219309,5219640,5219968,5221267,5221512,5221872,5222195,5222808	5215595,5215932,5216108,5216373,5216864,5217154,5217330,5217572,5217995,5218190,5218527,5218796,5219093,5219366,5219763,5220066,5221307,5221563,5221942,5222396,5223494	
chr9	5215453	5223494	5215866	5223069	+	Cre09.g399402.t2.1	Cre09.g399402.t2.1		5215453,5215833,5216061,5216271,5216807,5217052,5217305,5217492,5217854,5218110,5218468,5218720,5218990,5219309,5219640,5219968,5221267,5221512,5221872,5222195,5222808	5215595,5215932,5216108,5216373,5216864,5217154,5217330,5217572,5217995,5218190,5218527,5218796,5219093,5219366,5219763,5220066,5221307,5221563,5221942,5222396,5223494	
chr9	5223497	5226802	5224175	5226755	-	Cre09.g399439.t1.1	Cre09.g399439.t1.1		5226712,5226408,5225936,5225573,5225240,5224682,5223497	5226802,5226623,5226201,5225752,5225405,5225013,5224364	
chr9	1251136	1258131	1251650	1257870	-	Cre09.g399450.t1.2	Cre09.g399450.t1.2		1257813,1257230,1256822,1256097,1255758,1255546,1254731,1254111,1253755,1253220,1252190,1251136	1258131,1257282,1257058,1256467,1255864,1255626,1255309,1254614,1253871,1253500,1253014,1251966	
chr9	5226857	5231642	5227039	5231464	-	Cre09.g399476.t1.1	Cre09.g399476.t1.1		5231310,5229555,5229382,5228760,5228476,5228126,5227813,5227507,5226857	5231642,5231117,5229434,5229293,5228650,5228334,5227910,5227582,5227351	
chr9	5231833	5234991	5231983	5233845	+	Cre09.g399513.t1.1	Cre09.g399513.t1.1		5231833,5233166,5233555,5233767	5232994,5233373,5233634,5234991	null-allele mutant was isolated (PMID 29743196)
chr9	1239632	1245623	1239883	1243854	+	Cre09.g399550.t1.2	Cre09.g399550.t1.2		1239632,1240362,1240695,1241160,1241472,1241863,1242211,1242572,1242829,1243665	1240008,1240464,1240851,1241214,1241628,1241942,1242352,1242640,1243335,1245623	null-allele mutant was isolated (PMID 29743196)
chr9	1245626	1251081	1247901	1249387	-	Cre09.g399551.t1.1	Cre09.g399551.t1.1		1250350,1249370,1245626	1251081,1249486,1249180	
chr9	5235190	5239232	5236311	5239010	-	LCR1	Cre09.g399552.t1.1		5238918,5238761,5238501,5237938,5235190	5239232,5238798,5238528,5238377,5237735	Myb-DNA binding transcriptional factor induced under low CO2 stress condition [PMID: 15155888]; regulates CO2-responsive genes, Cah1, Lci1, and Lci6; regulated by CCM1 [PMID: 15235119]
chr9	5239287	5243632	5241742	5243470	-	Cre09.g399589.t1.1	Cre09.g399589.t1.1		5243416,5243001,5242581,5239287	5243632,5243193,5242761,5242256	
chr9	1230646	1232021	1230947	1231320	-	Cre09.g399600.t1.2	Cre09.g399600.t1.2		1230646	1232021	
chr9	1237424	1239511	1237784	1239416	-	Cre09.g399601.t1.1	Cre09.g399601.t1.1		1239239,1237424	1239511,1239047	
chr9	5243763	5249874	5243793	5248439	+	Cre09.g399626.t1.1	Cre09.g399626.t1.1		5243763,5244130,5244700,5245012,5245557,5245957,5246246,5246551,5247155,5247358,5247661,5247957,5248274	5243940,5244321,5244807,5245322,5245693,5246054,5246329,5246730,5247250,5247447,5247785,5248020,5249874	
chr9	1226948	1230581	1228390	1230345	-	Cre09.g399650.t1.1	Cre09.g399650.t1.1		1230131,1229561,1229148,1226948	1230581,1229602,1229177,1228821	
chr9	1226948	1230581	1228809	1230345	-	Cre09.g399650.t2.1	Cre09.g399650.t2.1		1230131,1229561,1226948	1230581,1229602,1229177	
chr9	5249877	5269772	5250223	5269393	-	FXL7	Cre09.g399663.t1.1		5269277,5268727,5268412,5268249,5267592,5267364,5266997,5266763,5266137,5265912,5265592,5265204,5264762,5264418,5264055,5263726,5263409,5262798,5262472,5262174,5261931,5261610,5261210,5260389,5259966,5259551,5259284,5259038,5258825,5258481,5258066,5256628,5256353,5256133,5255825,5255324,5255070,5254722,5254272,5253837,5252981,5252483,5252191,5252015,5251818,5251461,5251142,5250759,5249877	5269772,5268794,5268445,5268304,5267642,5267437,5267146,5266825,5266243,5266014,5265684,5265338,5264878,5264543,5264201,5263820,5263558,5262942,5262613,5262319,5261992,5261742,5261387,5260597,5260130,5259721,5259359,5259159,5258920,5258617,5258226,5257821,5256516,5256237,5255941,5255376,5255125,5254848,5254393,5254003,5253529,5252710,5252292,5252081,5251858,5251619,5251221,5250876,5250520	FixL like homolog 7 (FXL). PAS region shows high identity to Rhizobial FixL proteins.
chr9	5249877	5269772	5250223	5269393	-	FXL7	Cre09.g399663.t2.1		5269277,5268727,5268412,5268262,5267795,5267592,5267364,5266997,5266763,5266137,5265912,5265592,5265204,5264762,5264418,5264055,5263726,5263409,5262798,5262472,5262174,5261931,5261610,5261210,5260389,5259966,5259551,5259284,5259038,5258825,5258481,5258066,5256628,5256353,5256133,5255825,5255324,5255070,5254722,5254272,5253837,5252981,5252483,5252191,5252015,5251818,5251461,5251142,5250759,5249877	5269772,5268794,5268445,5268304,5267807,5267642,5267437,5267146,5266825,5266243,5266014,5265684,5265338,5264878,5264543,5264201,5263820,5263558,5262942,5262613,5262319,5261992,5261742,5261387,5260597,5260130,5259721,5259359,5259159,5258920,5258617,5258226,5257821,5256516,5256237,5255941,5255376,5255125,5254848,5254393,5254003,5253529,5252710,5252292,5252081,5251858,5251619,5251221,5250876,5250520	FixL like homolog 7 (FXL). PAS region shows high identity to Rhizobial FixL proteins.
chr9	5269822	5275868	5270898	5275651	-	Cre09.g399701.t1.1	Cre09.g399701.t1.1		5275639,5275108,5274832,5274397,5274221,5273406,5273135,5272983,5272789,5272560,5272107,5271889,5271698,5271292,5269822	5275868,5275278,5274912,5274708,5274295,5274005,5273257,5273012,5272857,5272668,5272399,5271951,5271754,5271516,5271003	
chr9	5275973	5281344	5276492	5280986	+	Cre09.g399738.t1.1	Cre09.g399738.t1.1		5275973,5276434,5276963,5277441,5278225,5278498,5278828,5279520,5280054,5280431,5280810	5276332,5276736,5277280,5277581,5278346,5278663,5279045,5279806,5280208,5280646,5281344	
chr9	5299013	5300274	5299117	5300258	+	Cre09.g399775.t1.1	Cre09.g399775.t1.1		5299013	5300274	
chr9	5315677	5319792	5316144	5319153	-	Cre09.g399812.t1.1	Cre09.g399812.t1.1		5318213,5316456,5315677	5319792,5318032,5316306	
chr9	5320817	5324812	5323719	5324059	-	Cre09.g399849.t1.1	Cre09.g399849.t1.1		5324014,5320817	5324812,5323854	
chr9	5361002	5367027	5361213	5366487	-	Cre09.g399886.t1.1	Cre09.g399886.t1.1		5366480,5363126,5361002	5367027,5366290,5363069	
chr9	1167146	1169357	1167179	1169046	+	Cre09.g399900.t3.1	Cre09.g399900.t3.1		1167146,1167937,1168488,1168917	1167669,1168010,1168691,1169357	
chr9	1166976	1169357	1167212	1169046	+	Cre09.g399900.t1.2	Cre09.g399900.t1.2		1166976,1167937,1168488,1168917	1167669,1168010,1168691,1169357	
chr9	1166976	1168517	1167212	1168488	+	Cre09.g399900.t2.1	Cre09.g399900.t2.1		1166976,1167937,1168488	1167669,1168063,1168517	
chr9	1169380	1176145	1169402	1176039	-	Cre09.g399907.t1.1	Cre09.g399907.t1.1		1175705,1173923,1173517,1172220,1171937,1171626,1171121,1170760,1170095,1169380	1176145,1174865,1173613,1173064,1172033,1171758,1171380,1170890,1170173,1169564	
chr9	1176269	1182045	1177225	1181695	-	Cre09.g399908.t1.1	Cre09.g399908.t1.1		1181653,1181110,1176269	1182045,1181412,1180699	
chr9	1183112	1183983	1183202	1183490	+	Cre09.g399909.t1.1	Cre09.g399909.t1.1		1183112,1183369	1183273,1183983	
chr9	1184102	1188305	1184630	1187352	+	Cre09.g399910.t1.1	Cre09.g399910.t1.1		1184102,1184619	1184376,1188305	
chr9	1191042	1195297	1191220	1194629	+	CDC20	Cre09.g399911.t1.1		1191042,1191406,1191980,1192270,1192738,1193139,1193504,1193964,1194395	1191334,1191765,1192064,1192363,1192903,1193243,1193656,1194065,1195297	CDC20 homolog. Activator and specificity subunit for anaphase promoting complex. Subunit 1 of Anaphase Promoting Complex. Cell cycle regulated E3 ubiquitin ligase. Related to fizzy/cdh1 proteins; ts-lethal mutant arrests with 2C DNA content and fails to initiate cleavage plane and complete mitosis (PMID 29743196)
chr9	1195305	1212081	1196737	1211983	-	Cre09.g399912.t1.1	Cre09.g399912.t1.1		1211936,1211638,1211214,1210868,1210563,1210240,1209565,1209244,1208862,1208067,1207689,1207538,1206750,1206291,1206031,1205710,1205307,1205099,1204408,1204081,1203581,1203251,1203046,1202846,1202548,1202288,1202049,1201624,1201334,1200954,1200541,1200153,1198792,1198532,1198243,1197891,1197610,1197326,1195305	1212081,1211718,1211301,1210882,1210605,1210334,1209966,1209369,1208978,1208639,1207780,1207592,1207337,1206377,1206072,1205787,1205419,1205162,1204512,1204193,1203686,1203294,1203103,1202902,1202587,1202333,1202127,1201674,1201432,1201124,1200642,1200185,1198949,1198619,1198363,1197997,1197710,1197404,1196920	
chr9	1212246	1218171	1213763	1218061	-	SSA8	Cre09.g399914.t1.1		1217875,1216460,1215887,1215615,1215168,1214222,1212246	1218171,1217683,1216101,1215741,1215247,1214402,1213883	identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA)
chr9	1218302	1220485	1218519	1219366	+	Cre09.g399915.t1.1	Cre09.g399915.t1.1		1218302,1218997,1219278	1218643,1219099,1220485	
chr9	1220551	1223021	1220965	1222639	-	Cre09.g399916.t1.1	Cre09.g399916.t1.1		1222028,1220551	1223021,1221365	
chr9	5375338	5381209	5375716	5381026	+	Cre09.g399923.t1.1	Cre09.g399923.t1.1		5375338,5379095	5378921,5381209	
chr9	1160532	1166355	1161389	1166060	-	Cre09.g399950.t1.2	Cre09.g399950.t1.2		1165967,1165223,1164810,1164529,1163914,1163452,1162883,1162601,1162217,1161935,1160532	1166355,1165340,1164864,1164604,1163994,1163550,1162968,1162697,1162301,1162026,1161572	null-allele mutant was isolated (PMID 29743196)
chr9	5391745	5403687	5392364	5402954	-	Cre09.g399960.t1.1	Cre09.g399960.t1.1		5402005,5400928,5398679,5398118,5397208,5391745	5403687,5401731,5400135,5398564,5397874,5396926	
chr9	5404178	5408129	5404268	5408027	+	Cre09.g399997.t1.1	Cre09.g399997.t1.1		5404178,5406558	5406384,5408129	
chr9	1149330	1159705	1150143	1159501	-	Cre09.g400000.t1.1	Cre09.g400000.t1.1		1157947,1157540,1156906,1153826,1153243,1152610,1152229,1151697,1151180,1149330	1159705,1157635,1157043,1155498,1153392,1152783,1152359,1152025,1151301,1150891	
chr9	5408242	5417107	5408609	5416552	-	Cre09.g400034.t1.1	Cre09.g400034.t1.1		5413344,5408242	5417107,5413027	
chr9	1144864	1148045	1145273	1147715	-	Cre09.g400050.t1.1	Cre09.g400050.t1.1		1147612,1147124,1145965,1144864	1148045,1147346,1146850,1145828	
chr9	5435342	5437097	5435364	5437013	-	Cre09.g400071.t1.1	Cre09.g400071.t1.1		5436981,5435342	5437097,5436895	
chr9	1142509	1144365	1142629	1143264	+	Cre09.g400100.t1.1	Cre09.g400100.t1.1		1142509,1142840	1142688,1144365	
chr9	5448278	5450279	5449062	5450160	+	Cre09.g400108.t1.1	Cre09.g400108.t1.1		5448278,5449344,5449521	5449139,5449443,5450279	
chr9	5453849	5456417	5454305	5456031	-	Cre09.g400145.t1.1	Cre09.g400145.t1.1		5455365,5454516,5453849	5456417,5454930,5454385	
chr9	1137450	1142385	1138103	1141873	-	Cre09.g400150.t1.1	Cre09.g400150.t1.1		1141807,1141138,1140649,1139821,1139203,1138840,1137450	1142385,1141455,1140801,1140097,1139411,1139007,1138304	
chr9	5456778	5463759	5457248	5463650	+	Cre09.g400182.t1.1	Cre09.g400182.t1.1		5456778,5460630,5462234	5460456,5462017,5463759	
chr9	1132018	1137385	1133498	1137010	-	Cre09.g400200.t1.1	Cre09.g400200.t1.1		1136977,1136683,1132018	1137385,1136862,1136435	
chr9	5472082	5476197	5472448	5476152	-	Cre09.g400219.t1.1	Cre09.g400219.t1.1		5476122,5475980,5475461,5474883,5474568,5474144,5472082	5476197,5476048,5475602,5474956,5474683,5474210,5473399	
chr9	1127636	1132007	1127946	1130233	+	Cre09.g400250.t1.1	Cre09.g400250.t1.1		1127636,1128938,1129418	1128435,1129211,1132007	
chr9	5476252	5478667	5477148	5478439	-	Cre09.g400256.t1.1	Cre09.g400256.t1.1		5478302,5478038,5476252	5478667,5478087,5477771	
chr9	5478768	5483519	5479209	5482860	+	Cre09.g400293.t1.1	Cre09.g400293.t1.1		5478768,5479191,5480046,5480397,5480615,5481057,5481587,5482098,5482586	5478912,5479569,5480147,5480420,5480733,5481228,5481895,5482213,5483519	
chr9	1122196	1126685	1122322	1124668	+	Cre09.g400300.t1.1	Cre09.g400300.t1.1		1122196,1123072,1123544	1122859,1123345,1126685	
chr9	1101306	1122147	1101540	1121710	+	Cre09.g400312.t1.1	Cre09.g400312.t1.1		1101306,1102017,1102591,1102880,1103241,1103545,1103881,1104478,1104840,1105154,1105719,1106083,1106766,1111523,1112057,1112449,1112803,1113331,1113831,1114556,1115025,1115237,1115526,1115970,1116669,1117023,1117295,1117919,1118555,1118917,1119237,1119513,1119875,1120911,1121143,1121347	1101603,1102441,1102641,1102959,1103294,1103682,1104200,1104553,1104979,1105489,1105790,1106544,1107017,1111840,1112116,1112573,1113140,1113575,1114269,1114825,1115089,1115375,1115846,1116503,1116836,1117093,1117673,1118158,1118680,1119042,1119277,1119600,1120221,1120949,1121172,1122147	
chr9	5483547	5492037	5485179	5491479	-	ALK6	Cre09.g400330.t1.1		5491763,5491424,5491232,5491024,5490550,5489624,5489289,5489002,5488593,5487672,5487183,5486460,5483547	5492037,5491564,5491337,5491161,5490781,5489747,5489383,5489067,5488697,5488343,5487464,5486969,5486166	null-allele mutant was isolated (PMID 29743196)
chr9	5483547	5492037	5485179	5491479	-	ALK6	Cre09.g400330.t2.1		5491763,5491424,5491232,5491024,5490550,5489624,5489289,5489002,5488593,5487696,5487183,5486460,5483547	5492037,5491564,5491337,5491161,5490781,5489747,5489383,5489067,5488697,5488343,5487464,5486969,5486166	null-allele mutant was isolated (PMID 29743196)
chr9	5492148	5496668	5492279	5496099	+	Cre09.g400367.t1.1	Cre09.g400367.t1.1		5492148,5492743,5493183,5493446,5493914,5494272,5494829,5495235,5495561,5495925	5492472,5492870,5493282,5493568,5493966,5494366,5494928,5495309,5495632,5496668	Homologue of S. cerevisiae RCL1, which is an RNA terminal phosphate cyclase-like protein involved in the 35S pre-rRNA precursor processing at sites A0, A1, and A2; Yeast Rcl1 does not possess detectable RNA cyclase activity.
chr9	1097516	1100933	1097595	1100535	+	Cre09.g400400.t1.1	Cre09.g400400.t1.1		1097516,1097884,1098395,1099294,1099746,1100217,1100451	1097709,1098027,1098511,1099389,1099849,1100334,1100933	
chr9	5496953	5500652	5497247	5499658	+	Cre09.g400404.t1.1	Cre09.g400404.t1.1		5496953,5497872,5498255,5498708,5499544	5497562,5497988,5498395,5499244,5500652	
chr9	5500667	5507242	5501323	5507122	-	Cre09.g400441.t1.1	Cre09.g400441.t1.1		5507024,5506663,5506313,5505992,5505623,5505378,5504937,5504554,5504012,5502668,5500667	5507242,5506746,5506391,5506138,5505700,5505464,5505001,5504639,5504172,5502778,5502448	
chr9	1080737	1095985	1081956	1095851	-	Cre09.g400450.t1.1	Cre09.g400450.t1.1		1095550,1095166,1094729,1093768,1092864,1092603,1092149,1091621,1091127,1090814,1090164,1089724,1089275,1088768,1088201,1087598,1087029,1086740,1086255,1085897,1085407,1084997,1084661,1084145,1083756,1083137,1080737	1095985,1095257,1094796,1094281,1092972,1092657,1092283,1091861,1091244,1090956,1090532,1089954,1089413,1089091,1088595,1088035,1087224,1086825,1086431,1085992,1085541,1085033,1084818,1084353,1083826,1083471,1082481	
chr9	1080737	1095985	1081956	1095851	-	Cre09.g400450.t2.1	Cre09.g400450.t2.1		1095550,1095166,1094729,1093768,1092864,1092603,1092149,1091621,1091127,1090814,1090164,1089724,1089275,1088768,1088201,1087598,1087029,1086740,1086255,1085897,1085407,1084997,1084661,1084145,1083756,1083137,1080737	1095985,1095257,1094796,1094230,1092972,1092657,1092283,1091861,1091244,1090956,1090532,1089954,1089413,1089091,1088595,1088035,1087224,1086825,1086431,1085992,1085541,1085033,1084818,1084353,1083826,1083471,1082481	
chr9	1080737	1095985	1081956	1095851	-	Cre09.g400450.t3.1	Cre09.g400450.t3.1		1095550,1095166,1094729,1093768,1092864,1092603,1092149,1091621,1091127,1090814,1090164,1089724,1089275,1088768,1088201,1087598,1087029,1086740,1086255,1085897,1085407,1084997,1084661,1084145,1083756,1083137,1080737	1095985,1095257,1094796,1094230,1092972,1092657,1092283,1091861,1091244,1090956,1090532,1089954,1089413,1089091,1088595,1088035,1087224,1086822,1086431,1085992,1085541,1085033,1084818,1084353,1083826,1083471,1082481	
chr9	5507383	5516754	5507538	5515952	+	DIV31	Cre09.g400478.t1.1		5507383,5507609,5507752,5508229,5509363,5509777,5510035,5510430,5510924,5511401,5511704,5512006,5512488,5512941,5513270,5513832,5514232,5514605,5514944,5515224,5515484,5515820	5507544,5507651,5507954,5508514,5509543,5509849,5510159,5510693,5511018,5511500,5511772,5512129,5512598,5513018,5513510,5514005,5514374,5514690,5515091,5515301,5515585,5516754	ts-lethal mutants block initiation of DNA replication (PMID 25336509)
chr9	1074966	1080636	1075068	1080125	+	Cre09.g400500.t1.1	Cre09.g400500.t1.1		1074966,1075411,1075728,1076344,1077212,1077591,1077900,1078177,1078523,1078941,1079180,1079471,1079874	1075252,1075559,1076030,1076784,1077394,1077638,1077991,1078267,1078645,1079001,1079258,1079568,1080636	null-allele passenger mutation was isolated (PMID 29743196)
chr9	1073456	1074917	1073758	1074834	+	Cre09.g400515.t1.2	Cre09.g400515.t1.2		1073456,1074237,1074799	1073828,1074536,1074917	
chr9	5516827	5519882	5517670	5519719	-	Cre09.g400516.t1.1	Cre09.g400516.t1.1		5519464,5518959,5518462,5516827	5519882,5519120,5518608,5518126	
chr9	1065166	1072807	1065308	1072396	+	NOA1	Cre09.g400550.t1.2		1065166,1065531,1066251,1066902,1067140,1067535,1067896,1068415,1068751,1069572,1069870,1070390,1070783,1071107,1071843	1065322,1066068,1066577,1066943,1067277,1067637,1068049,1068500,1069241,1069694,1070144,1070574,1070841,1071378,1072807	NO-associated; carries a GTPase domain, homologue in Arabidopsis appears necessary for synthesis of nitric oxide, but does not carry out the reaction (PMID: 17030145)
chr9	5520743	5541454	5521126	5540423	+	TOR1	Cre09.g400553.t1.1		5520743,5521561,5521785,5522126,5522501,5522995,5523357,5523869,5524380,5524799,5525156,5525592,5526165,5526545,5526938,5527308,5527635,5528106,5528637,5529096,5529585,5530044,5530374,5531269,5531728,5532325,5532854,5533274,5533865,5534223,5534784,5535309,5535643,5536110,5536553,5536953,5537446,5537982,5538453,5539028,5539591,5540210	5521365,5521621,5521946,5522329,5522694,5523116,5523479,5524128,5524484,5524883,5525380,5525743,5526351,5526721,5527137,5527406,5527802,5528304,5528848,5529313,5529873,5530157,5530889,5531430,5531958,5532591,5533025,5533491,5534014,5534498,5534914,5535417,5535849,5536287,5536698,5537123,5537604,5538181,5538594,5539321,5539929,5541454	Homologue of TOR, a PI3K-like protein kinase with a role in the regulation of protein synthesis and cellular organization.  Ataxia telangiectasia mutated (ATR) -related.  Characterized by Diaz-Troya et al. 2008 [PMID: 18039939, 18670193]; ts-lethal mutant was isolated (PMID 29743196)
chr9	5520743	5541454	5521126	5540423	+	TOR1	Cre09.g400553.t2.1		5520743,5521561,5521785,5522126,5522501,5522995,5523357,5523896,5524380,5524799,5525156,5525592,5526165,5526545,5526938,5527308,5527635,5528106,5528637,5529096,5529585,5530044,5530374,5531269,5531728,5532325,5532854,5533274,5533865,5534223,5534784,5535309,5535643,5536110,5536553,5536953,5537446,5537982,5538453,5539028,5539591,5540210	5521365,5521621,5521946,5522329,5522694,5523116,5523479,5524128,5524484,5524883,5525380,5525743,5526351,5526721,5527137,5527406,5527802,5528304,5528848,5529313,5529873,5530157,5530889,5531430,5531958,5532591,5533025,5533491,5534014,5534498,5534914,5535417,5535849,5536287,5536698,5537123,5537604,5538181,5538594,5539321,5539929,5541454	Homologue of TOR, a PI3K-like protein kinase with a role in the regulation of protein synthesis and cellular organization.  Ataxia telangiectasia mutated (ATR) -related.  Characterized by Diaz-Troya et al. 2008 [PMID: 18039939, 18670193]; ts-lethal mutant was isolated (PMID 29743196)
chr9	5543403	5548412	5544710	5548191	-	Cre09.g400590.t1.1	Cre09.g400590.t1.1		5547889,5547493,5547229,5546865,5546355,5546169,5545427,5545147,5543403	5548412,5547593,5547314,5546956,5546422,5546242,5545830,5545207,5544878	
chr9	1059665	1064955	1060017	1064222	-	Cre09.g400600.t1.1	Cre09.g400600.t1.1		1063640,1063205,1063074,1062663,1062395,1062251,1061760,1061361,1060601,1059665	1064955,1063352,1063111,1063014,1062417,1062306,1062024,1061539,1060785,1060451	
chr9	5548813	5552046	5549218	5550969	+	Cre09.g400627.t1.1	Cre09.g400627.t1.1		5548813,5549712,5549842,5550067,5550585	5549626,5549769,5549943,5550359,5552046	
chr9	1053374	1057032	1053715	1057014	-	RPS6	Cre09.g400650.t1.2		1056876,1056612,1055195,1054313,1053994,1053374	1057032,1056747,1055390,1054387,1054131,1053779	Cytosolic 40S small ribosomal subunit protein S6
chr9	5552067	5558352	5552777	5557928	-	Cre09.g400664.t1.1	Cre09.g400664.t1.1		5557876,5557708,5557451,5555982,5555451,5554898,5554451,5553110,5552067	5558352,5557750,5557595,5557284,5555752,5555295,5554581,5554155,5552900	
chr9	1049806	1052181	1050076	1051554	+	Cre09.g400700.t1.1	Cre09.g400700.t1.1		1049806,1050452,1050804,1051386	1050275,1050621,1051169,1052181	
chr9	5559273	5561814	5559936	5561558	+	Cre09.g400701.t1.1	Cre09.g400701.t1.1		5559273,5560369,5560763,5561434	5560027,5560611,5561225,5561814	
chr9	5561864	5566044	5562382	5564755	+	Cre09.g400738.t1.1	Cre09.g400738.t1.1		5561864,5562189,5563066,5563557,5563904,5564314,5564561	5562035,5562589,5563221,5563679,5564089,5564404,5566044	
chr9	1040456	1049705	1041403	1047962	+	AMT5	Cre09.g400750.t1.2		1040456,1041386,1041995,1042313,1042755,1043196,1044338,1044649,1044970,1045170,1045615,1046004,1046296,1046720,1047090,1047644	1041019,1041574,1042042,1042332,1042903,1043371,1044464,1044811,1045030,1045302,1045657,1046076,1046394,1046794,1047266,1049705	belongs to AMT1 family (Amt1;5 or Amt1.5); two different splicing variants have been found for this gene, this one is AMT1Ea, the longer one (AY542492)
chr9	5566047	5567052	5566287	5566943	-	ISCA1	Cre09.g400775.t1.1		5566843,5566732,5566579,5566047	5567052,5566766,5566645,5566409	SufA/IscA homolog; very distantly related to ISCA2
chr9	1023976	1037136	1024143	1035354	+	Cre09.g400800.t1.2	Cre09.g400800.t1.2		1023976,1024314,1024794,1025171,1025612,1026089,1026473,1026817,1027146,1028304,1028792,1029300,1029754,1030273,1031647,1032262,1032646,1033000,1033404,1033839,1034092,1034466,1034708,1035261	1024234,1024495,1024873,1025315,1025832,1026225,1026543,1026914,1027269,1028594,1028988,1029412,1030029,1031415,1032028,1032448,1032792,1033137,1033521,1033972,1034240,1034575,1035003,1037136	
chr9	5567163	5573724	5567384	5573151	+	Cre09.g400812.t1.1	Cre09.g400812.t1.1		5567163,5567660,5567998,5568345,5568840,5569204,5569469,5569716,5570081,5570721,5571062,5572251,5572606,5572854	5567431,5567778,5568074,5568506,5568899,5569272,5569576,5569892,5570407,5570834,5571749,5572282,5572683,5573724	
chr9	5575293	5587858	5575926	5585360	+	Cre09.g400849.t1.1	Cre09.g400849.t1.1		5575293,5576230,5576398,5576851,5577928,5579177,5580703,5581460,5581847,5582569,5582917,5583206,5583443,5583791,5584327,5584610,5585179	5576112,5576315,5576614,5577731,5578960,5580511,5581224,5581537,5582161,5582686,5583095,5583278,5583546,5584049,5584379,5584728,5587858	null-allele mutant was isolated (PMID 29743196)
chr9	967871	1009998	968075	1009998	+	CTL4	Cre09.g400850.t1.1		967871,968330,968766,969178,969558,969861,970341,970772,971113,971551,971853,972176,972609,972988,973337,973753,974095,974521,974879,975211,975546,975880,976351,976657,977017,977273,977587,977999,978309,978835,979673,979907,980155,980422,980748,981043,981417,981901,982410,982834,983055,983322,983623,983999,984272,984662,985789,986023,986379,986732,987048,987350,987674,988744,989399,989872,990374,990766,991258,991576,991890,992443,993529,994712,995539,995974,998548,998835,999328,1000315,1000571,1000975,1001290,1002557,1003892,1004225,1005285,1005573,1005909,1006190,1006394,1006818,1007215,1007806,1008526,1008965,1009241,1009537	968142,968480,968860,969325,969667,970042,970476,970949,971276,971708,972001,972414,972764,973120,973512,973912,974240,974672,974984,975368,975735,976194,976466,976816,977114,977402,977798,978108,978681,979379,979754,979990,980296,980554,980857,981209,981692,982179,982666,982915,983129,983469,983758,984108,984447,985528,985873,986152,986565,986952,987153,987419,988563,989143,989651,989979,990542,990944,991347,991668,992213,993349,994553,995363,995805,998388,998679,999146,1000083,1000463,1000826,1001097,1002426,1003705,1004050,1005132,1005366,1005729,1005982,1006226,1006529,1006977,1007625,1008254,1008742,1009075,1009390,1009998	Contains multiple carbohydrate binding domains: H-lectin, WSC, C-type lectin, PAN/APPLE-like; has many homologs in Chlamydomonas and Volvox; formerly annotated as putative polycystin cation channel
chr9	1015540	1023835	1015884	1023435	-	Cre09.g400851.t1.1	Cre09.g400851.t1.1		1023367,1022174,1021810,1021388,1020559,1019832,1018727,1018437,1018146,1017162,1016935,1015540	1023835,1022738,1021941,1021543,1021206,1020288,1019326,1018597,1018238,1017989,1016997,1016748	
chr9	5595897	5606492	5596051	5606377	-	Cre09.g400886.t1.1	Cre09.g400886.t1.1		5606206,5605992,5605647,5604289,5603427,5602693,5602108,5601498,5600447,5599649,5599158,5598528,5598111,5597704,5597380,5597083,5596565,5596322,5595897	5606492,5606134,5605857,5605460,5604021,5603328,5602527,5601867,5601141,5599815,5599335,5598818,5598231,5597912,5597452,5597186,5596883,5596372,5596200	
chr9	952707	960390	955552	960333	-	Cre09.g400900.t1.2	Cre09.g400900.t1.2		959987,959566,959344,959078,958678,958201,957819,957408,957239,956909,952707	960390,959871,959430,959250,958854,958386,958037,957648,957311,957040,956747	
chr9	5606547	5615562	5607037	5614835	-	FAP28	Cre09.g400923.t1.1		5615363,5614798,5614569,5613848,5613399,5612671,5612064,5611874,5611610,5611386,5610962,5610562,5610328,5609929,5609652,5609330,5609002,5608720,5608419,5607658,5606547	5615562,5614882,5614616,5614311,5613494,5613130,5612417,5611929,5611700,5611441,5611173,5610709,5610402,5610040,5609728,5609396,5609108,5608785,5608508,5607743,5607455	
chr9	944781	952652	945146	951486	+	NCT2	Cre09.g400950.t1.2		944781,944969,945776,946250,946662,947118,947472,947899,948536,948807,949427,949715,950292,950649,951010	944856,945158,945829,946363,946744,947184,947528,948058,948617,949184,949529,949898,950368,950748,952652	major facilitator superfamily
chr9	5615624	5621412	5616036	5621111	-	Cre09.g400960.t1.1	Cre09.g400960.t1.1		5620377,5620062,5619534,5619156,5618796,5618341,5617791,5617150,5616795,5616459,5615624	5621412,5620149,5619638,5619211,5618933,5618485,5617977,5617226,5616874,5616543,5616129	
chr9	5621549	5627465	5621675	5626556	+	Cre09.g400997.t1.1	Cre09.g400997.t1.1		5621549,5622315,5622913,5623437,5623941,5624669,5624964,5625337,5625989,5626421	5621891,5622578,5623107,5623555,5624058,5624722,5625072,5625711,5626065,5627465	
chr9	939611	944712	939711	943737	+	SNE3	Cre09.g401000.t1.1		939611,942696	942057,944712	NAD-dependent epimerase/dehydratase (probably a UDP-glucose 4-epimerase); belongs to a family of proteins which utilise NAD as a cofactor and use nucleotide-sugar substrates for a variety of chemical reactions
chr9	933501	939552	933738	938940	+	UXE	Cre09.g401022.t1.2		933501,934556,934987,935533,935897,936370,936740,937150,937658,938421,938864	933758,934677,935093,935665,935991,936486,936833,937275,937821,938506,939552	UDP-Arabinose synthesis enzyme, localized to Golgi
chr9	5627770	5631432	5628305	5631341	-	Cre09.g401034.t1.1	Cre09.g401034.t1.1		5630066,5629977,5629303,5627770	5631432,5630007,5629733,5628995	
chr9	919731	933374	919829	932995	+	Cre09.g401050.t1.1	Cre09.g401050.t1.1		919731,920377,920909,921278,921819,922298,922568,922936,923357,923664,923936,924321,924738,924980,925559,926022,926658,926978,927390,927683,928396,928770,929373,929731,930061,930367,930577,930888,931297,931622,931983,932336	919976,920604,920997,921508,922053,922355,922744,923075,923480,923759,924099,924570,924898,925354,925675,926197,926796,927088,927505,927836,928506,929189,929484,929843,930188,930450,930715,931016,931420,931698,932148,933374	
chr9	5631507	5635472	5632473	5635278	-	Cre09.g401071.t1.1	Cre09.g401071.t1.1		5633900,5633282,5631507	5635472,5633685,5632953	
chr9	915183	919470	915895	919112	-	Cre09.g401100.t1.2	Cre09.g401100.t1.2		919041,918848,918716,918522,918079,917568,917206,916732,916271,915183	919470,918946,918764,918559,918245,917663,917281,916818,916405,915998	
chr9	5635614	5638362	5636498	5638325	-	Cre09.g401108.t1.1	Cre09.g401108.t1.1		5637370,5635614	5638362,5637097	
chr9	5638897	5644712	5639723	5644534	-	Cre09.g401145.t1.1	Cre09.g401145.t1.1		5644408,5643621,5643328,5642619,5642043,5641290,5640931,5640390,5638897	5644712,5643757,5643371,5642663,5642200,5641406,5641101,5640611,5640080	null-allele mutant was isolated (PMID 29743196)
chr9	912368	915080	913191	914937	-	Cre09.g401150.t1.1	Cre09.g401150.t1.1		914821,914452,914071,913748,913318,912368	915080,914533,914144,913844,913532,913191	
chr9	912368	915080	913183	914937	-	Cre09.g401150.t2.1	Cre09.g401150.t2.1		914821,914452,914071,913748,913318,912368	915080,914533,914144,913844,913532,913183	
chr9	5645223	5652994	5645454	5652465	+	CGL153	Cre09.g401182.t1.1		5645223,5645794,5647554,5647962,5648420,5648772,5649495,5650046,5650376,5650753,5651365,5651771,5652330	5645595,5647216,5647671,5648098,5648521,5649141,5649758,5650189,5650544,5650926,5651486,5651924,5652994	
chr9	5653017	5656082	5653899	5655452	-	Cre09.g401219.t1.1	Cre09.g401219.t1.1		5654282,5653017	5656082,5654007	
chr9	5656373	5660496	5656406	5660009	+	Cre09.g401256.t1.1	Cre09.g401256.t1.1		5656373,5656781,5657672,5658304,5658725,5659044,5659211,5659467,5659894	5656659,5656908,5657866,5658433,5658804,5659103,5659239,5659595,5660496	
chr9	5660544	5672822	5661753	5672517	-	SULTR3	Cre09.g401293.t1.1		5672494,5672240,5672055,5671762,5671507,5671332,5671009,5670743,5670235,5669892,5669549,5669140,5668708,5668244,5667720,5667305,5666769,5666256,5665678,5665140,5664759,5664496,5664136,5663427,5663162,5662638,5660544	5672822,5672325,5672130,5671843,5671538,5671377,5671106,5670839,5670368,5670100,5669595,5669207,5668738,5668416,5667877,5667396,5666935,5666363,5665834,5665269,5664814,5664552,5664318,5663636,5663242,5662802,5662476	
chr9	896658	901869	896881	899271	+	Cre09.g401300.t1.2	Cre09.g401300.t1.2		896658,896999,897232,897683,898290,898697,899020	896932,897040,897318,897746,898421,898774,901869	
chr9	901880	905167	903879	904526	-	Cre09.g401301.t1.1	Cre09.g401301.t1.1		905034,904445,901880	905167,904590,904125	
chr9	5672887	5676192	5673710	5676028	-	Cre09.g401330.t1.1	Cre09.g401330.t1.1		5675979,5675782,5675415,5674998,5674718,5674221,5672887	5676192,5675867,5675513,5675150,5674813,5674388,5673791	
chr9	892523	896557	893027	896526	-	Cre09.g401350.t1.2	Cre09.g401350.t1.2		896411,896135,895866,895501,895194,893385,892523	896557,896253,895929,895577,895280,893488,893175	
chr9	5676530	5681892	5677120	5681754	-	Cre09.g401367.t1.1	Cre09.g401367.t1.1		5681616,5680859,5679683,5679050,5678778,5678250,5677552,5676530	5681892,5681218,5680444,5679412,5678816,5678419,5677654,5677177	
chr9	888018	892080	888426	891886	+	Cre09.g401400.t1.2	Cre09.g401400.t1.2		888018,889706,890420,891253	889445,889970,890686,892080	
chr9	5683371	5686236	5684618	5686181	-	Cre09.g401404.t1.1	Cre09.g401404.t1.1		5686046,5683371	5686236,5685653	
chr9	5686311	5689246	5686420	5688458	-	Cre09.g401441.t1.1	Cre09.g401441.t1.1		5686311	5689246	
chr9	881429	887137	883433	886293	-	Cre09.g401450.t1.1	Cre09.g401450.t1.1		886830,886493,884462,883687,881429	887137,886601,886323,884224,883494	null-allele mutant was isolated (PMID 29743196)
chr9	5689351	5692836	5689510	5692713	-	Cre09.g401478.t1.1	Cre09.g401478.t1.1		5692647,5692016,5691644,5691054,5690534,5690148,5689351	5692836,5692558,5691765,5691081,5690617,5690219,5689846	
chr9	877520	881257	877696	881018	-	BSD3	Cre09.g401500.t1.1		880010,878582,877520	881257,879531,878270	3-beta-hydroxy-delta5-steroid dehydrogenase
chr9	5692937	5699106	5693064	5697586	+	Cre09.g401515.t1.1	Cre09.g401515.t1.1		5692937,5693521,5693856,5694355,5695033,5695876,5696516,5697014,5697443	5693307,5693558,5693979,5694492,5695104,5695947,5696701,5697182,5699106	
chr9	866148	876289	866184	875001	+	Cre09.g401550.t1.1	Cre09.g401550.t1.1		866148,866626,866854,867681,867997,868428,868935,869572,870000,870310,870584,870882,871185,871622,871912,872213,872673,873070,873435,873627,873991,874845	866352,866676,867360,867762,868093,868517,869001,869657,870045,870366,870652,870934,871257,871733,871967,872299,872792,873151,873466,873680,874437,876289	
chr9	876292	877367	876702	877030	-	Cre09.g401551.t1.1	Cre09.g401551.t1.1		877208,876292	877367,877098	3-beta-hydroxy-delta5-steroid dehydrogenase
chr9	5699477	5704450	5699549	5704216	+	Cre09.g401552.t1.1	Cre09.g401552.t1.1		5699477,5702710,5703192	5702131,5702769,5704450	
chr9	5702287	5704450	5702513	5704216	+	Cre09.g401552.t2.1	Cre09.g401552.t2.1		5702287,5702710,5703192	5702533,5702769,5704450	
chr9	5705577	5710128	5705617	5709401	+	Cre09.g401589.t1.1	Cre09.g401589.t1.1		5705577	5710128	
chr9	864278	866101	864441	865796	+	Cre09.g401600.t1.2	Cre09.g401600.t1.2		864278,864729,865105,865405,865701	864476,864832,865167,865539,866101	
chr9	5710647	5716309	5710716	5714461	+	Cre09.g401626.t1.1	Cre09.g401626.t1.1		5710647	5716309	
chr9	859464	863877	860363	863241	-	Cre09.g401650.t1.2	Cre09.g401650.t1.2		863607,863103,862663,862157,861840,861547,861026,860742,859464	863877,863394,862814,862223,861872,861597,861154,860807,860546	
chr9	5716311	5722076	5716975	5721724	-	Cre09.g401663.t1.1	Cre09.g401663.t1.1		5721259,5720953,5720262,5719984,5719322,5718868,5718476,5717868,5717428,5716311	5722076,5721009,5720345,5720042,5719454,5718903,5718556,5717969,5717492,5717009	
chr9	848818	859357	849373	859256	-	Cre09.g401700.t1.2	Cre09.g401700.t1.2		859153,858481,857916,857357,856923,856395,856092,855663,855228,854736,854434,854112,853644,853177,852765,852416,851828,851239,850649,850015,849631,848818	859357,858817,858247,857721,857150,856539,856215,855750,855305,854981,854485,854217,853709,853260,852888,852504,851954,851442,851032,850192,849731,849448	
chr9	5722197	5727281	5722434	5726414	+	Cre09.g401701.t1.1	Cre09.g401701.t1.1		5722197,5722926,5723653,5724175,5724697,5725311,5725835,5726348	5722565,5723169,5723745,5724318,5724784,5725467,5725997,5727281	
chr9	5727499	5730968	5727772	5730490	+	Cre09.g401738.t1.1	Cre09.g401738.t1.1		5727499,5727997,5728373,5728865,5729305,5729728,5730083,5730419	5727822,5728008,5728416,5728968,5729418,5729797,5730163,5730968	
chr9	843532	848307	844005	848189	-	Cre09.g401750.t1.1	Cre09.g401750.t1.1		848134,847816,847531,847136,846812,846578,846188,845688,845158,844749,844329,843532	848307,848009,847653,847216,846915,846637,846286,845792,845170,844916,844459,844102	
chr9	5731027	5732218	5731139	5731326	+	Cre09.g401775.t1.1	Cre09.g401775.t1.1		5731027	5732218	
chr9	834782	843067	835282	842918	-	Cre09.g401800.t1.1	Cre09.g401800.t1.1		841720,841317,840925,836129,834782	843067,841477,841044,840688,836005	
chr9	5732337	5753738	5732504	5752909	+	Cre09.g401812.t1.1	Cre09.g401812.t1.1		5732337,5732791,5733414,5733822,5734643,5734988,5735522,5736548,5737105,5737540,5737715,5738303,5738875,5739286,5739612,5739966,5740352,5740733,5741247,5741541,5742624,5743040,5743471,5743792,5744074,5744713,5745099,5745424,5745685,5746022,5746344,5746859,5748866,5749515,5749840,5751242,5752044,5752391,5752764	5732642,5733216,5733585,5734446,5734746,5735069,5736235,5736770,5737173,5737614,5738130,5738495,5739036,5739447,5739689,5740157,5740464,5741063,5741321,5742403,5742809,5743234,5743684,5743927,5744387,5744874,5745269,5745535,5745816,5746166,5746712,5748500,5749279,5749726,5751073,5751838,5752196,5752458,5753738	
chr9	5732337	5753532	5732504	5752909	+	Cre09.g401812.t2.1	Cre09.g401812.t2.1		5732337,5732791,5733414,5733822,5734643,5734988,5735522,5736548,5737105,5737540,5737715,5738303,5738875,5739286,5739612,5739966,5740352,5740733,5741247,5741541,5742624,5743040,5743471,5743792,5744074,5744713,5745099,5745424,5745685,5746022,5746344,5746859,5748866,5749515,5749840,5751242,5752044,5752391,5752764	5732642,5733216,5733585,5734446,5734746,5735069,5736235,5736770,5737173,5737614,5738130,5738495,5739036,5739447,5739689,5740157,5740464,5741063,5741321,5742403,5742809,5743234,5743684,5743927,5744387,5744874,5745269,5745535,5745816,5746166,5746712,5748500,5749279,5749726,5751073,5751838,5752196,5752458,5753532	
chr9	5754587	5760898	5754620	5758946	+	Cre09.g401849.t1.1	Cre09.g401849.t1.1		5754587,5757833	5757383,5760898	
chr9	826688	834761	827113	834141	+	Cre09.g401850.t1.1	Cre09.g401850.t1.1		826688,828214,828509,828822,833418	827972,828374,828628,833288,834761	
chr9	5760934	5765996	5761525	5765898	-	Cre09.g401886.t1.1	Cre09.g401886.t1.1		5765712,5765060,5764610,5764051,5763665,5763239,5762865,5762284,5761916,5760934	5765996,5765182,5764782,5764143,5763806,5763338,5762949,5762389,5761960,5761591	
chr9	812648	825305	814079	824665	+	Cre09.g401900.t1.2	Cre09.g401900.t1.2		812648,813946,814685,815060,815619,816014,816385,816679,816993,817354,817677,818157,818782,819247,819711,820090,820320,820701,821169,821686,822157,822655,823284,823606,823975,824511	813446,814265,814792,815200,815724,816112,816537,816779,817085,817479,817775,818282,819057,819412,819796,820193,820417,820976,821329,821790,822409,823041,823423,823722,824144,825305	
chr9	5766217	5774633	5766292	5773646	+	Cre09.g401923.t1.1	Cre09.g401923.t1.1		5766217,5766400,5766770,5767316,5767813,5768150,5768436,5769056,5769525,5769931,5770477,5770822,5771321,5771633,5772018,5772450,5772910	5766307,5766539,5766896,5767443,5767879,5768201,5768589,5769201,5769635,5770028,5770578,5770896,5771392,5771698,5772140,5772511,5774633	
chr9	803041	812547	803574	812406	-	Cre09.g401950.t1.1	Cre09.g401950.t1.1		812247,811856,811345,811010,810573,810311,810000,809671,809275,809094,808631,808206,805695,803041	812547,811939,811458,811061,810697,810403,810083,809744,809356,809165,808714,808316,807908,805557	
chr9	5774639	5778992	5776019	5778881	-	Cre09.g401960.t1.1	Cre09.g401960.t1.1		5778827,5778410,5778036,5777696,5777297,5777038,5776697,5776292,5774639	5778992,5778490,5778246,5777861,5777443,5777068,5776780,5776363,5776088	
chr9	5779041	5783246	5779566	5782919	-	Cre09.g401997.t1.1	Cre09.g401997.t1.1		5783157,5782895,5782432,5782112,5781650,5781260,5780960,5780465,5780244,5779041	5783246,5783047,5782596,5782194,5781733,5781342,5781020,5780570,5780315,5779713	
chr9	5783347	5790058	5783447	5789750	+	Cre09.g402034.t1.1	Cre09.g402034.t1.1		5783347,5783693,5784116,5785019,5785552,5785883,5786795,5787245,5787623,5788217,5788637,5789135	5783585,5783824,5784257,5785074,5785635,5785938,5786848,5787336,5787732,5788295,5788824,5790058	
chr9	302695	305612	305395	305582	-	Cre09.g402041.t1.1	Cre09.g402041.t1.1		302695	305612	
chr9	774972	787987	775618	787512	-	Cre09.g402050.t1.1	Cre09.g402050.t1.1		787385,787256,786863,786366,784357,776375,774972	787987,787296,787135,786456,786230,784006,776197	
chr9	788112	801627	788701	801325	-	CLV4	Cre09.g402051.t1.1		801291,800423,799708,799430,799091,798714,798260,797862,797300,796847,796313,795834,795300,793845,793400,792980,792568,792052,791547,791032,790658,789665,788112	801627,800691,799759,799512,799174,798800,798382,798010,797406,796908,796426,795941,795509,794841,793497,793087,792708,792107,791709,791380,790730,790186,789101	
chr9	5790078	5792596	5790587	5792120	-	Cre09.g402071.t1.1	Cre09.g402071.t1.1		5791321,5790078	5792596,5790874	
chr9	771648	774117	772342	773771	-	Cre09.g402100.t1.2	Cre09.g402100.t1.2		773663,773446,773254,772949,771648	774117,773513,773335,773019,772397	
chr9	5792794	5817036	5793170	5816843	-	Cre09.g402108.t1.1	Cre09.g402108.t1.1		5816761,5816187,5814709,5812371,5811585,5810322,5809914,5808957,5808492,5807574,5807073,5806765,5805940,5805473,5804222,5803656,5802950,5802067,5801264,5800888,5800552,5800205,5799722,5799196,5798493,5798045,5797617,5797068,5796154,5795703,5794179,5793688,5792794	5817036,5816503,5815964,5814074,5812164,5811325,5810100,5809759,5808798,5808005,5807282,5806819,5806419,5805747,5805289,5803823,5803407,5802685,5801909,5801010,5800651,5800322,5799899,5799333,5798619,5798102,5797712,5797097,5796870,5795816,5795363,5793865,5793274	C-terminal domain PF12166 found as an extracellular domain in Piezo, FAM38 mechanosensitive non-specific cation channel proteins; may be involved in locolazing R-RAS to the ER
chr9	5817707	5820358	5817768	5819548	+	Cre09.g402145.t1.1	Cre09.g402145.t1.1		5817707,5818521,5819031,5819403	5818231,5818682,5819130,5820358	
chr9	769414	771427	769802	771305	-	Cre09.g402150.t1.1	Cre09.g402150.t1.1		771113,769414	771427,770777	
chr9	5820363	5831496	5820825	5831113	-	Cre09.g402182.t1.1	Cre09.g402182.t1.1		5831044,5829703,5829232,5828176,5827667,5827342,5825903,5825427,5824040,5822856,5822493,5822189,5821896,5820363	5831496,5830930,5829553,5828254,5827699,5827389,5826946,5825743,5825096,5823728,5822550,5822289,5821968,5821385	
chr9	766138	768519	766267	767243	+	Cre09.g402200.t1.1	Cre09.g402200.t1.1		766138,766996,767238	766683,767051,768519	
chr9	765292	766037	765451	765960	-	Cre09.g402212.t1.2	Cre09.g402212.t1.2		765697,765292	766037,765451	
chr9	5832519	5833964	5832907	5833925	-	LCI3	Cre09.g402219.t1.1		5833865,5833266,5832519	5833964,5833346,5832985	Regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145].
chr9	5832519	5834176	5832907	5833925	-	LCI3	Cre09.g402219.t2.1		5833865,5833266,5832519	5834176,5833346,5832985	Regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145].
chr9	5834011	5851746	5835733	5851459	-	Cre09.g402256.t1.1	Cre09.g402256.t1.1		5851430,5851238,5850011,5849567,5849031,5848193,5847800,5847272,5846903,5846319,5846044,5845338,5844940,5844263,5843879,5843305,5842973,5842545,5841835,5841393,5840959,5840346,5839910,5839609,5839071,5837757,5837375,5836694,5836245,5834011	5851746,5851306,5850331,5849664,5849287,5848694,5847936,5847406,5847016,5846404,5846145,5845454,5845096,5844528,5843963,5843430,5843056,5842677,5842419,5841580,5841097,5840569,5840110,5839783,5839307,5837932,5837431,5836902,5836372,5835885	
chr9	5834230	5851746	5835733	5851459	-	Cre09.g402256.t2.1	Cre09.g402256.t2.1		5851430,5851238,5850011,5849567,5849031,5848193,5847800,5847272,5846903,5846319,5846044,5845338,5844940,5844263,5843879,5843305,5842973,5842545,5841835,5841393,5840959,5840346,5839910,5839609,5839071,5837757,5837375,5836694,5836245,5834230	5851746,5851306,5850331,5849664,5849287,5848694,5847936,5847406,5847016,5846404,5846145,5845454,5845096,5844528,5843963,5843430,5843056,5842677,5842419,5841580,5841097,5840569,5840110,5839783,5839307,5837932,5837431,5836902,5836372,5835885	
chr9	5852560	5856157	5854667	5854917	-	Cre09.g402293.t1.1	Cre09.g402293.t1.1		5855597,5852560	5856157,5855212	
chr9	761298	762302	761426	761891	+	ASA8	Cre09.g402300.t1.2		761298,761871	761676,762302	Mitochondrial ATP synthase associated protein 8; part of peripheral stalk involed in dimerization
chr9	762392	765197	762989	765153	-	Cre09.g402304.t1.1	Cre09.g402304.t1.1		764837,764757,764581,764299,764201,763946,763723,763322,762392	765197,764774,764663,764357,764217,764005,763864,763517,763163	null-allele mutant was isolated (PMID 29743196)
chr9	762392	765197	762989	765153	-	Cre09.g402304.t2.1	Cre09.g402304.t2.1		764837,764757,764581,764306,763946,763723,763322,762392	765197,764774,764663,764357,764005,763864,763517,763163	null-allele mutant was isolated (PMID 29743196)
chr9	762392	765197	762989	765153	-	Cre09.g402304.t3.1	Cre09.g402304.t3.1		764837,764581,764306,763946,763723,763322,762392	765197,764663,764357,764005,763864,763517,763163	null-allele mutant was isolated (PMID 29743196)
chr9	5857764	5871987	5859810	5871818	-	Cre09.g402330.t1.1	Cre09.g402330.t1.1		5871731,5870888,5870537,5870220,5869627,5869353,5869110,5868761,5868188,5867197,5865961,5865676,5864506,5863445,5863015,5862475,5862066,5860137,5857764	5871987,5871589,5870605,5870408,5869680,5869402,5869187,5868885,5868289,5867926,5866972,5865762,5865336,5864365,5863226,5862850,5862149,5860271,5859939	
chr9	758212	761197	759044	760997	-	Cre09.g402350.t1.2	Cre09.g402350.t1.2		760847,760619,760319,759404,758212	761197,760757,760383,759484,759164	
chr9	5872052	5875477	5873442	5875249	-	Cre09.g402367.t1.1	Cre09.g402367.t1.1		5874218,5873872,5872052	5875477,5873929,5873493	
chr9	751918	756259	752245	755314	+	Cre09.g402400.t1.1	Cre09.g402400.t1.1		751918,752470,752896,754017,754268	752248,752604,753820,754064,756259	
chr9	756608	758199	756825	757950	+	Cre09.g402402.t1.1	Cre09.g402402.t1.1		756608,757333	756997,758199	
chr9	5875793	5880827	5877389	5880312	-	Cre09.g402404.t1.1	Cre09.g402404.t1.1		5880309,5879311,5878799,5878412,5877942,5875793	5880827,5879391,5878870,5878518,5878057,5877487	
chr9	5880938	5885869	5881481	5885851	+	Cre09.g402441.t1.1	Cre09.g402441.t1.1		5880938,5881293,5882128,5882316,5882779,5883121,5883503,5884982,5885366,5885737	5881134,5881577,5882169,5882420,5882835,5883182,5884619,5885049,5885471,5885869	
chr9	747408	751809	747677	751378	+	Cre09.g402450.t1.2	Cre09.g402450.t1.2		747408,748616,749113,749630,749980,750574,750936,751293	748160,748736,749222,749701,750099,750693,751069,751809	
chr9	5885872	5894857	5886677	5894541	-	Cre09.g402478.t1.1	Cre09.g402478.t1.1		5894444,5892477,5892136,5891721,5890478,5889931,5887972,5887598,5887264,5885872	5894857,5894095,5892240,5892004,5891489,5890008,5888847,5887702,5887332,5886875	
chr9	741798	747199	742084	746675	+	ATPVA2	Cre09.g402500.t1.2		741798,742485,742794,743096,743461,743776,744102,744576,744929,745128,745338,745608,745870,746188,746576	742276,742697,742904,743317,743643,743928,744359,744808,745007,745231,745489,745762,746052,746439,747199	Vacuolar proton pump subunit 1; Vacuolar H+-ATPase V0 sector, subunit A
chr9	5895388	5910059	5895746	5908883	+	AMX1	Cre09.g402515.t1.1		5895388,5895917,5897366,5897870,5898438,5898905,5899246,5899605,5899913,5900993,5901530,5901730,5904436,5904727,5905106,5905474,5905884,5906204,5906594,5907239,5907674,5908173,5908492,5908857	5895762,5896032,5897530,5897917,5898535,5899009,5899395,5899662,5899986,5901100,5901578,5901812,5904513,5904816,5905182,5905508,5905976,5906267,5906691,5907388,5907742,5908268,5908648,5910059	Contains PTS1 canonical sequence
chr9	5910485	5912187	5911385	5912160	-	NUO11	Cre09.g402552.t1.1		5912069,5910485	5912187,5911978	Mitochondrial NADH-ubiquinone oxidoreductase (Complex I) subunit, mitochondrial; 4L.gi|28932861|gb|AAO61142.1|; NADH-ubiquinone oxidoreductase subunit 4L/subunit 11/chain K (=NAD4L, NUOK [PMID: 15710684; PMID: 15450959]
chr9	5912798	5927769	5913002	5927705	+	Cre09.g402589.t1.1	Cre09.g402589.t1.1		5912798,5913417,5913657,5913937,5914165,5914894,5915700,5916018,5916793,5917669,5918774,5922782,5923069,5923990,5924690,5924964,5926510,5927063,5927640	5913186,5913484,5913792,5913989,5914644,5915387,5915799,5916456,5917445,5918599,5922334,5922936,5923756,5924477,5924834,5926230,5926804,5927345,5927769	null-allele mutant was isolated (PMID 29743196)
chr9	716778	721330	716816	720590	+	Cre09.g402600.t1.1	Cre09.g402600.t1.1		716778,717422,717783,718204,718822,719575	717103,717538,717867,718464,719156,721330	
chr9	721342	733457	723607	733225	-	Cre09.g402601.t1.1	Cre09.g402601.t1.1		732459,726981,725007,724447,721342	733457,732223,726728,724752,723901	
chr9	733602	739827	734850	739444	-	Cre09.g402602.t1.1	Cre09.g402602.t1.1		739420,733602	739827,739101	null-allele mutant was isolated (PMID 29743196)
chr9	5927829	5933059	5928684	5931385	+	Cre09.g402626.t1.1	Cre09.g402626.t1.1		5927829,5928611,5929162,5929733,5930221,5930637,5931359	5928559,5928973,5929455,5930067,5930468,5930857,5933059	
chr9	713778	716721	714001	716152	+	Cre09.g402650.t1.2	Cre09.g402650.t1.2		713778,714467,715145,715759,716089	714179,714606,715341,715861,716721	
chr9	5933092	5937817	5934462	5937473	-	Cre09.g402663.t1.1	Cre09.g402663.t1.1		5937345,5937073,5936593,5936239,5935596,5935165,5933092	5937817,5937129,5936803,5936457,5936095,5935435,5934945	
chr9	705668	713623	706009	713360	-	Cre09.g402700.t1.2	Cre09.g402700.t1.2		713266,712735,712318,711995,711563,711234,710857,710341,709416,709002,708565,707474,707122,705668	713623,712792,712455,712078,711653,711406,710916,710437,710210,709058,708662,708062,707198,706829	
chr9	5937928	5940754	5937956	5940126	+	Cre09.g402701.t1.1	Cre09.g402701.t1.1		5937928,5938756,5938970,5939342,5939717,5939985	5938564,5938829,5939208,5939536,5939788,5940754	
chr9	5938719	5940754	5939031	5940126	+	Cre09.g402701.t2.1	Cre09.g402701.t2.1		5938719,5938970,5939342,5939717,5939985	5938829,5939208,5939536,5939788,5940754	
chr9	5940818	5945251	5941025	5943854	+	Cre09.g402738.t1.1	Cre09.g402738.t1.1		5940818,5941235,5941613,5942067,5943443	5941070,5941300,5941695,5943291,5945251	
chr9	697454	705665	697563	705462	+	COG2	Cre09.g402750.t1.2		697454,697885,698121,698635,698948,699455,700125,700687,701345,702726,703533,704491,704929	697716,697944,698231,698691,699028,699658,700432,700880,701539,703198,704030,704626,705665	Conserved Hypothetical Protein. Similar to COG2, component of oligomeric golgi complex 2, involved in vesicle tethering and other Golgi functions
chr9	5945542	5956937	5947020	5956502	-	Cre09.g402775.t1.1	Cre09.g402775.t1.1		5956283,5955917,5955388,5954969,5954158,5953496,5953202,5952780,5952327,5951905,5951330,5950767,5950461,5950034,5949399,5948903,5947730,5945542	5956937,5956036,5955450,5955067,5954250,5953621,5953293,5952891,5952439,5951992,5951430,5950881,5950565,5950139,5949581,5949145,5947784,5947324	
chr9	692994	697405	693368	696872	+	Cre09.g402800.t1.1	Cre09.g402800.t1.1		692994,693972,694771,695258,695614,696818	693614,694298,694915,695342,695818,697405	
chr9	5957031	5959637	5958149	5959243	-	Cre09.g402812.t1.1	Cre09.g402812.t1.1		5959371,5959197,5958542,5957031	5959637,5959268,5958692,5958267	
chr9	5960658	5963899	5960699	5963737	+	Cre09.g402849.t1.1	Cre09.g402849.t1.1		5960658,5961126,5961541,5962101,5962410,5962809,5963136,5963728	5960819,5961167,5961685,5962156,5962525,5962858,5963269,5963899	
chr9	5991389	5993477	5991458	5992691	+	Cre09.g402886.t1.1	Cre09.g402886.t1.1		5991389,5991652,5991816,5992293,5992598	5991473,5991723,5991911,5992400,5993477	
chr9	684524	692945	684621	690103	+	Cre09.g402900.t1.1	Cre09.g402900.t1.1		684524,688473,688724,690001	688233,688537,689756,692945	
chr9	5993492	6000517	5994103	6000377	-	Cre09.g402923.t1.1	Cre09.g402923.t1.1		6000003,5998906,5998360,5997843,5997524,5997282,5996706,5996215,5995875,5995330,5994980,5994667,5994519,5993492	6000517,5998975,5998496,5997971,5997613,5997313,5996816,5996364,5995923,5995641,5995046,5994723,5994557,5994259	
chr9	679031	684353	679613	684221	-	CGL21	Cre09.g402950.t1.1		684136,683598,682922,682384,682092,681820,681399,681139,680770,680258,679031	684353,683705,683250,682444,682201,681906,681454,681199,680925,680344,679811	
chr9	6001232	6002827	6002617	6002795	-	Cre09.g402960.t1.1	Cre09.g402960.t1.1		6001232	6002827	
chr9	6005462	6009507	6005591	6009461	-	Cre09.g402997.t1.1	Cre09.g402997.t1.1		6009093,6008837,6008286,6008045,6007788,6006333,6005937,6005462	6009507,6008949,6008413,6008121,6007872,6007350,6006133,6005675	
chr9	673718	678973	674279	678617	-	PAP9	Cre09.g403000.t1.1		678772,677397,677031,676463,675952,675518,675066,673718	678973,678648,677133,676645,676086,675622,675156,674650	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; conserved in green algae
chr9	6009586	6011806	6009660	6011280	+	Cre09.g403034.t1.1	Cre09.g403034.t1.1		6009586,6010059,6010448,6010866,6011143	6009843,6010193,6010522,6010944,6011806	
chr9	670032	673663	670786	673523	-	DSP6	Cre09.g403050.t1.1		673353,672936,672609,672174,671732,671316,670032	673663,673044,672677,672263,671817,671381,671090	MAP Kinase Phosphatase 6 (Mitogen-Activated Protein Kinase Phosphatase 6, Dual Specificity Protein Phosphatase 6) (DSP6); Dephosphorylates phosphotyrosine, phosphoserine, and phosphothreonine residues; probably chloroplast targeted
chr9	6011926	6014562	6012445	6013392	+	Cre09.g403071.t1.1	Cre09.g403071.t1.1		6011926,6012972	6012484,6014562	
chr9	6015086	6027069	6015386	6026313	+	Cre09.g403108.t1.1	Cre09.g403108.t1.1		6015086,6019195,6019810,6020186,6020711,6021173,6023724,6024340,6024862,6025428,6026057	6018912,6019300,6019888,6020272,6020868,6021515,6023794,6024433,6025072,6025533,6027069	May contain additional coding sequence in intronic N-island PMID: 27175017
chr9	6048446	6053224	6048727	6052734	+	Cre09.g403145.t1.1	Cre09.g403145.t1.1		6048446,6049087,6050092,6050620,6051052,6051559,6052111,6052518	6048810,6049411,6050216,6050715,6051145,6051687,6052209,6053224	
chr9	659606	663815	659895	661962	+	PWR9	Cre09.g403150.t1.1		659606,660170,660519	659938,660351,663815	Belongs to a family of 14 Chlamydomonas genes with similarity to DUF506 proteins (plant-specific, unknown function); contains pfam04720: PDDEXK_6, distant homologues of the PD-(D/E)XK nuclease superfamily; the PWR family name comes from the perfectly conserved PWR motif shared between the Chlamydomonas and plant proteins; many genes in the family show clustering on chromosomes 3, 14 and 16; there is no obvious organelle targeting sequence
chr9	663894	667605	664295	665515	+	Cre09.g403151.t1.1	Cre09.g403151.t1.1		663894,664646	664368,667605	
chr9	6053340	6071465	6054171	6071355	-	Cre09.g403182.t1.1	Cre09.g403182.t1.1		6071187,6070928,6070362,6069894,6069579,6068903,6068522,6068101,6067572,6066932,6066464,6065703,6065472,6064930,6064289,6063780,6063213,6062637,6062138,6061602,6061231,6060820,6060222,6059624,6059261,6058971,6058562,6058138,6057817,6057422,6056864,6056575,6055996,6055235,6054789,6053340	6071465,6071110,6070467,6069949,6069725,6069130,6068608,6068235,6067799,6067102,6066703,6065963,6065525,6065037,6064470,6063952,6063357,6062754,6062293,6061744,6061429,6060915,6060406,6059804,6059416,6059030,6058664,6058276,6057888,6057539,6057041,6056660,6056157,6055383,6054885,6054486	ts-lethal mutant was isolated (PMID 29743196)
chr9	654815	659503	655652	658945	-	FAP198	Cre09.g403200.t1.2		658936,658808,658646,658322,657891,657404,656905,656266,654815	659503,658846,658723,658383,657966,657496,657011,656356,655790	Conserved uncharacterized Flagellar Associated Protein; cyt-b5 -like domain in the N terminal part of the protein; found in the flagellar proteome; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr9	654815	659303	655652	658945	-	FAP198	Cre09.g403200.t2.1		658936,658808,658646,658322,657891,657404,656905,656266,654815	659303,658846,658723,658383,657966,657496,657011,656356,655790	Conserved uncharacterized Flagellar Associated Protein; cyt-b5 -like domain in the N terminal part of the protein; found in the flagellar proteome; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation
chr9	6071586	6075025	6071824	6074139	+	RPB5	Cre09.g403219.t1.1		6071586,6072725,6073197,6073652,6074028	6072013,6072775,6073387,6073718,6075025	
chr9	648038	654133	649298	653457	-	Cre09.g403250.t1.1	Cre09.g403250.t1.1		653372,651016,650794,650417,650099,649855,649440,648038	654133,653126,650838,650569,650278,649971,649745,649316	
chr9	6075029	6078135	6075806	6077924	-	Cre09.g403256.t1.1	Cre09.g403256.t1.1		6077501,6077091,6075029	6078135,6077192,6076772	
chr9	6078726	6082149	6079003	6081426	+	Cre09.g403293.t1.1	Cre09.g403293.t1.1		6078726,6079163,6079819,6080232,6080615,6080908,6081292	6079091,6079294,6079881,6080318,6080702,6080978,6082149	Putative 5-Formyltetrahydrofolate cycloligase (5,10-methenytetrahydrofolate synthetase), probably mitochondrial protein, metabolism of tetrahydrofolate-bound one-carbon units.  Possibly mitochondrial
chr9	642072	648035	642472	647173	+	Cre09.g403300.t1.2	Cre09.g403300.t1.2		642072,642867,643068,643626,644038,644657,645059,645431,645875,646162,646592,647117	642583,642912,643326,643782,644294,644807,645301,645558,645959,646212,646724,648035	
chr9	6086050	6087395	6086920	6087104	-	Cre09.g403330.t1.1	Cre09.g403330.t1.1		6086050	6087395	
chr9	634468	641963	637158	641799	-	Cre09.g403350.t1.1	Cre09.g403350.t1.1		641742,641352,641088,640676,638933,634468	641963,641561,641132,640963,640486,638724	
chr9	6087490	6099635	6090424	6099593	-	Cre09.g403367.t1.1	Cre09.g403367.t1.1		6097909,6096673,6096436,6095741,6092699,6091319,6090675,6087490	6099635,6097724,6096471,6096313,6095476,6092554,6090894,6090477	
chr9	629634	634390	630434	632945	+	Cre09.g403400.t1.1	Cre09.g403400.t1.1		629634,630303,630801,631105,631412,632117	629821,630668,630951,631233,631827,634390	
chr9	6099720	6102549	6100311	6102506	-	Cre09.g403404.t1.1	Cre09.g403404.t1.1		6102263,6101310,6100504,6099720	6102549,6102070,6101120,6100311	
chr9	6112550	6114235	6113153	6113854	-	Cre09.g403441.t1.1	Cre09.g403441.t1.1		6113510,6112550	6114235,6113292	
chr9	624026	629043	625250	627789	-	Cre09.g403450.t1.2	Cre09.g403450.t1.2		628361,627537,627216,626941,626342,624026	629043,627912,627366,627069,626772,626129	
chr9	612134	618205	612979	617420	+	Cre09.g403500.t1.2	Cre09.g403500.t1.2		612134,612859,613727,614031,614328,614964,617420	612407,613231,613877,614159,614755,616531,618205	
chr9	606874	610203	606978	609179	+	FVS1	Cre09.g403550.t1.2		606874,607303,607667,607981,608366,609007	607086,607527,607829,608087,608736,610203	Oxoglutarate/iron-dependent oxygenase
chr9	606874	610203	606978	609179	+	FVS1	Cre09.g403550.t2.1		606874,607303,607667,607981,608366,609007	607086,607527,607829,608087,608703,610203	Oxoglutarate/iron-dependent oxygenase
chr9	597274	606720	597964	606214	+	Cre09.g403600.t1.1	Cre09.g403600.t1.1		597274,598422,598904,599384,599829,600184,600617,600953,601293,601838,603163,604072,604458,605019	598100,598575,599129,599521,599882,600344,600766,601166,601598,602927,603797,604275,604828,606720	
chr9	589254	597024	589960	594557	+	Cre09.g403650.t1.1	Cre09.g403650.t1.1		589254,589876,590564,590863,593087,593385,593726,593983,594536	589684,590288,590687,592795,593239,593564,593842,594300,597024	
chr9	579424	583535	580771	582812	+	Cre09.g403700.t1.1	Cre09.g403700.t1.1		579424,580286,580760,581176,581511,582156,582695	580097,580358,581081,581328,581878,582530,583535	
chr9	572384	577627	572558	575526	+	HAD6	Cre09.g403750.t1.1		572384,573049,573434,573805,574165,574785,575448	572866,573154,573491,573944,574584,574916,577627	
chr9	550864	570503	551406	570395	-	DHC14	Cre09.g403800.t1.2		570252,570094,569934,569585,569213,568623,567970,566934,566132,565693,565166,564850,564325,563784,563384,562798,562469,562020,560727,559179,558464,557663,557399,556768,556245,555931,554741,553996,552681,550864	570503,570172,570026,569744,569412,569021,568437,567577,566702,565947,565498,564985,564710,564176,563626,563214,562620,562315,561853,560557,558952,558168,557523,557316,556562,556071,555796,554583,553754,552393	Possibly involved in circadian rhythms
chr9	546691	550403	547094	550125	-	Cre09.g403850.t1.1	Cre09.g403850.t1.1		547761,547359,546691	550403,547511,547232	
chr9	540944	544965	541028	543754	+	FAP294	Cre09.g403900.t1.2		540944,541779,542068,542388,543013,543409	541239,541820,542088,542683,543144,544965	Flagellar Associated Coiled-Coil Protein, found in the flagellar proteome; transcript upregulated during flagellar regeneration [PMID: 157384]
chr9	532369	535813	533410	535097	-	Cre09.g403950.t1.2	Cre09.g403950.t1.2		535062,534392,534141,533736,532369	535813,534536,534257,534044,533452	
chr9	536550	537773	537268	537437	-	Cre09.g403954.t1.1	Cre09.g403954.t1.1		536550	537773	
chr9	537907	540003	538959	539861	-	Cre09.g403955.t1.1	Cre09.g403955.t1.1		539606,539187,537907	540003,539212,539113	
chr9	528230	531929	528812	531723	-	CPLD59	Cre09.g404000.t1.1		531647,531058,530571,530196,529792,529465,529102,528230	531929,531174,530617,530339,529917,529521,529155,528839	Conserved in the Plant Lineage and Diatoms
chr9	513690	528221	513801	526589	+	Cre09.g404050.t1.1	Cre09.g404050.t1.1		513690,514211,514662,514943,515266,515463,515890,516308,516516,516931,517416,517642,518220,518549,519253,519560,519953,521073,522287,522930,523386,523926,524341,524638,524845,525126,525384	513892,514394,514725,515059,515367,515704,516053,516366,516725,517053,517497,518043,518329,519040,519372,519730,520816,522156,522778,523069,523581,524012,524372,524705,524900,525185,528221	
chr9	505760	513641	505971	512921	+	CLV3	Cre09.g404100.t1.2		505760,506114,506487,506770,507631,508205,508740,509077,509443,509841,510317,510755,511230,511797,512169,512504	506025,506314,506587,506893,507804,508460,508828,509240,509620,509999,510440,510902,511343,511893,512243,513641	
chr9	488057	493569	489490	493453	-	Cre09.g404200.t1.1	Cre09.g404200.t1.1		493327,493093,491778,491142,488057	493569,493234,492976,491252,490816	
chr9	495000	503449	495905	503280	-	PHC30	Cre09.g404201.t1.1		503233,502819,502357,501495,501136,500406,499437,498645,498271,498013,497762,497445,497066,496721,496495,496129,495000	503449,503020,502660,502003,501258,500890,500123,499326,498453,498081,497869,497563,497192,496860,496539,496257,495966	belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain. (partial sequence, codes only for the N-terminal domain and a part of the HR-domain; reason: sequence gap)
chr9	469654	487759	470208	487541	-	CEP9	Cre09.g404250.t1.1		487395,486921,486309,486078,485720,485427,484020,483774,482889,482081,481216,480520,480136,479507,479202,478866,478544,478162,476955,476684,476359,476034,475750,474830,474527,474239,473922,473424,472198,471611,470665,469654	487759,487002,486546,486205,485886,485521,484170,483783,483645,482788,481947,481055,480392,479937,479318,479026,478707,478381,477037,476834,476476,476249,475927,475401,474592,474417,474057,473755,473225,472041,471475,470515	Cysteine-type endopeptidase, papain type, with LysM, FTP-lectin, EGF and SRCR (Scavenger receptor cysteine-rich) domains
chr9	457490	466877	457784	466631	+	Cre09.g404350.t1.2	Cre09.g404350.t1.2		457490,457989,458271,458743,459000,459283,459723,460380,460725,461039,461501,461847,462400,463213,463548,464238,464551,465006,465384,465725,466104,466373	457838,458101,458409,458841,459062,459369,460188,460530,460845,461152,461698,462250,462724,463374,463943,464442,464819,465206,465576,465886,466207,466877	Homolog of exportin 4, involved in mRNA transport between the nucleus and cytoplasmi
chr9	466934	469179	467614	469089	-	Cre09.g404351.t1.1	Cre09.g404351.t1.1		468959,468828,468384,468156,467834,466934	469179,468895,468464,468210,467993,467660	
chr9	455235	457379	455800	456864	-	Cre09.g404400.t1.2	Cre09.g404400.t1.2		457115,456615,456176,455235	457379,456961,456322,455902	ChromDB HCP341; Putative histone deacetylase protein; possible SAP18 homolog
chr9	449510	455102	450650	454602	-	MCP24	Cre09.g404450.t1.1		453514,453205,452806,452544,452170,451721,451024,449510	455102,453337,452880,452643,452319,451936,451532,450719	
chr9	432360	444991	432840	444128	+	SFI1	Cre09.g404500.t1.1		432360,432973,433306,433619,434704,435108,435405,435658,435895,436181,436452,436708,437168,437674,438059,438360,438699,439027,439344,439540,439923,440216,440472,440807,441023,441807,442185,443133,443413	432899,433136,433480,434566,434992,435305,435529,435772,436070,436339,436574,436986,437560,437925,438203,438578,438938,439234,439396,439790,440030,440322,440598,440870,441685,442061,442988,443302,444991	Related to yeast spindle pole body protein SFI1. Contains at least 19 recognizable SFI repeat sequences, which in the yeast protein act as centrin-binding sequences.
chr9	446470	449501	446759	449394	+	Cre09.g404503.t1.1	Cre09.g404503.t1.1		446470,447624,448236,449341	447562,448081,448880,449501	
chr9	447026	449501	447110	449394	+	Cre09.g404503.t2.1	Cre09.g404503.t2.1		447026,447624,448236,449341	447562,448081,448880,449501	
chr9	427664	431209	428357	431142	-	Cre09.g404550.t1.2	Cre09.g404550.t1.2		430823,430461,429758,429428,428976,428802,427664	431209,430573,430079,429611,429125,428898,428534	
chr9	431266	432179	431563	431873	-	Cre09.g404552.t1.1	Cre09.g404552.t1.1		431266	432179	
chr9	417724	424829	418317	424700	-	Cre09.g404650.t1.2	Cre09.g404650.t1.2		424285,424025,423731,423418,423018,422669,422400,422046,421489,421142,420658,420301,420018,419489,419203,418892,418581,417724	424829,424128,423856,423555,423143,422827,422473,422232,421851,421281,420788,420458,420106,419664,419321,418990,418728,418406	
chr9	414317	417379	416661	417217	-	Cre09.g404700.t1.1	Cre09.g404700.t1.1		417052,414317	417379,416952	
chr9	406341	412599	406499	412269	-	SRR2	Cre09.g404750.t1.1		412198,411944,411359,411038,410189,409937,409521,409122,408855,408519,408289,408005,407051,406775,406341	412599,412046,411680,411153,410711,410027,409629,409227,408945,408630,408394,408127,407894,406898,406628	Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912)
chr9	396084	402919	396332	402709	-	Cre09.g404800.t1.1	Cre09.g404800.t1.1		402481,402094,401774,401411,401087,400753,400423,400002,399758,399408,398915,398644,398423,398198,397895,397440,397102,396537,396084	402919,402311,401888,401545,401232,400906,400523,400160,399821,399448,399261,398765,398487,398283,397965,397547,397221,396733,396441	
chr9	393460	396051	393665	394562	+	Cre09.g404850.t1.1	Cre09.g404850.t1.1		393460,393745,394080	393681,393816,396051	
chr9	380704	385649	381546	385203	-	Cre09.g404900.t1.1	Cre09.g404900.t1.1		385384,385071,384904,384618,384227,383840,383560,383115,382740,382349,381894,380704	385649,385234,384939,384664,384391,384043,383626,383286,382893,382590,381976,381636	
chr9	385704	387069	386084	386889	-	Cre09.g404903.t1.1	Cre09.g404903.t1.1		386799,385704	387069,386174	
chr9	387530	392411	387847	391656	+	Cre09.g404904.t1.1	Cre09.g404904.t1.1		387530,389517,390832,391065	389164,390182,390948,392411	
chr9	375955	378959	376898	378848	-	Cre09.g404950.t1.2	Cre09.g404950.t1.2		378709,378541,377755,375955	378959,378615,378360,376898	
chr9	367370	373235	367427	372760	+	Cre09.g405000.t1.2	Cre09.g405000.t1.2		367370,368373,368996,370325,371063,371474,371937	368050,368667,370054,370744,371206,371607,373235	
chr9	373820	375911	374791	375478	+	Cre09.g405002.t1.1	Cre09.g405002.t1.1		373820,374021,375430	373934,375022,375911	
chr9	363974	366599	364576	366444	-	ATPVD2	Cre09.g405050.t1.2		366071,365756,365273,364869,363974	366599,365844,365381,364960,364723	V-ATPase D subunit; Vacuolar proton pump D subunit; Vacuolar H+-ATPase V1 sector, subunit D
chr9	351233	353930	352127	353542	+	Cre09.g405100.t2.1	Cre09.g405100.t2.1		351233,352092,352446,352831	352003,352365,352561,353930	null-allele mutant was isolated (PMID 29743196)
chr9	351203	353930	352127	353542	+	Cre09.g405100.t1.1	Cre09.g405100.t1.1		351203,351898,352092,352446,352831	351805,352003,352365,352561,353930	null-allele mutant was isolated (PMID 29743196)
chr9	356596	357509	356628	356800	-	Cre09.g405104.t1.1	Cre09.g405104.t1.1		356596	357509	
chr9	359244	359799	359413	359696	-	Cre09.g405105.t1.1	Cre09.g405105.t1.1		359244	359799	
chr9	360937	362619	361462	362536	-	Cre09.g405106.t1.1	Cre09.g405106.t1.1		362423,360937	362619,361586	
chr9	6120610	6127495	6121592	6127429	-	PUS1	Cre09.g405150.t1.1		6127054,6126607,6126110,6125694,6125269,6124821,6124460,6124084,6123688,6123020,6122584,6120610	6127495,6126675,6126205,6125808,6125345,6124898,6124547,6124115,6123737,6123115,6122644,6122081	tRNA pseudouridine synthase-like protein, putative precursor form possibly targeted to the mitochondria.
chr9	6127595	6131197	6127763	6130320	+	MRPL13	Cre09.g405200.t1.2		6127595,6127953,6128339,6128948,6129328,6129623,6129987	6127859,6127994,6128462,6129060,6129378,6129697,6131197	
chr9	6131244	6133956	6131395	6132522	+	Cre09.g405250.t1.2	Cre09.g405250.t1.2		6131244,6131551,6131798,6132366	6131459,6131651,6131995,6133956	
chr9	6131276	6133705	6131395	6132522	+	Cre09.g405250.t2.1	Cre09.g405250.t2.1		6131276,6131551,6131798,6132366	6131459,6131651,6131995,6133705	
chr9	6133960	6136225	6134301	6136088	-	Cre09.g405300.t1.2	Cre09.g405300.t1.2		6136001,6135545,6135175,6134671,6133960	6136225,6135629,6135268,6134807,6134381	
chr9	6133960	6135605	6134301	6135558	-	Cre09.g405300.t2.1	Cre09.g405300.t2.1		6135545,6135175,6134671,6133960	6135605,6135268,6134807,6134381	
chr9	6136575	6138815	6137075	6138652	-	Cre09.g405350.t2.1	Cre09.g405350.t2.1		6138552,6138393,6138158,6137658,6136575	6138815,6138475,6138264,6137805,6137240	
chr9	6136350	6138815	6137075	6138652	-	Cre09.g405350.t1.2	Cre09.g405350.t1.2		6138552,6138393,6138158,6137658,6136350	6138815,6138475,6138264,6137805,6137240	
chr9	6138864	6140515	6139322	6140351	-	PFP3	Cre09.g405400.t1.2		6140264,6139928,6138864	6140515,6140040,6139521	
chr9	6140607	6143457	6140699	6142072	+	Cre09.g405450.t1.2	Cre09.g405450.t1.2		6140607,6140889,6141483,6141982	6140793,6141048,6141528,6143457	
chr9	6143460	6146395	6143529	6146322	-	MLD1	Cre09.g405500.t1.1		6146115,6145958,6145406,6145026,6144703,6144298,6143986,6143704,6143460	6146395,6145990,6145556,6145075,6144781,6144377,6144062,6143764,6143559	Identified by proteomic analysis of lipid droplet fractions; necessary for normal oil body formation; induced during nitrogen starvation
chr9	6146650	6151055	6147892	6151026	-	TIM21	Cre09.g405550.t1.2		6150923,6150740,6150406,6149816,6149172,6148809,6148318,6146650	6151055,6150831,6150504,6149935,6149313,6148897,6148356,6148021	Mitochondrial import inner membrane translocase subunit of 21 kDa
chr9	6151109	6153095	6151419	6152896	-	SFT1	Cre09.g405600.t1.2		6152876,6152697,6152527,6152004,6151109	6153095,6152805,6152583,6152150,6151455	Expressed protein. Similar to SFT1-like Qc-SNAREs found in animals, fungi and plants involved in intra-Golgi vesicle transport.
chr9	6153150	6156735	6153615	6156469	-	Cre09.g405650.t1.2	Cre09.g405650.t1.2		6156291,6155626,6155296,6154649,6154047,6153150	6156735,6155987,6155350,6155028,6154337,6153774	
chr9	6158605	6164239	6158915	6163780	+	Cre09.g405701.t1.1	Cre09.g405701.t1.1		6158605,6159264,6159594,6160029,6162538	6159068,6159358,6159732,6161522,6164239	
chr9	6164295	6169922	6164609	6168534	+	CAH8	Cre09.g405750.t1.1		6164295,6165455,6166130,6166641,6166981,6167186,6167658,6168030,6168442	6164752,6165563,6166252,6166743,6167045,6167296,6167715,6168227,6169922	from cDNA data; null-allele mutant was isolated (PMID 29743196)
chr9	6170205	6170916	6170289	6170506	+	Cre09.g405776.t1.1	Cre09.g405776.t1.1		6170205	6170916	
chr9	6170986	6174774	6171801	6174569	-	Cre09.g405800.t1.2	Cre09.g405800.t1.2		6174485,6174305,6173878,6173604,6173084,6172782,6172288,6170986	6174774,6174388,6173920,6173635,6173182,6172828,6172356,6171937	
chr9	6174883	6180003	6174979	6179405	+	NUO7	Cre09.g405850.t1.1		6174883,6175113,6175284,6175984,6176452,6176793,6177207,6177689,6178118,6178486,6178897,6179312	6175025,6175206,6175483,6176048,6176582,6176923,6177397,6177835,6178210,6178560,6179034,6180003	NADH:ubiquinone oxidoreductase 49 kD subunit, mitochondrial. gi 34328792 gb AAQ63700.1 ; NADH:ubiquinone oxidoreductase (Complex I) subunit. =nad7. gi 34328792 gb AAQ63700.1  [PMID: 15710684; PMID: 15450959]
chr9	6180085	6193274	6180727	6192328	+	Cre09.g405900.t1.1	Cre09.g405900.t1.1		6180085,6180721,6181035,6181332,6182491,6183452,6183791,6184082,6186767,6187048,6190196	6180500,6180793,6181157,6182301,6183138,6183578,6183857,6186565,6186835,6190033,6193274	
chr9	6193640	6196414	6195144	6195918	-	Cre09.g405950.t1.2	Cre09.g405950.t1.2		6196180,6195764,6193640	6196414,6196017,6195389	
chr9	6198277	6203994	6198865	6203527	-	BPL1	Cre09.g406000.t1.1		6203395,6202763,6202432,6201987,6201629,6201083,6200046,6199426,6198277	6203994,6202978,6202507,6202072,6201691,6201192,6200256,6199631,6198938	Biotin-acetyl-CoA-carboxylase ligase, biotin/lipoate A/B protein ligase; Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase (Holocarboxylase synthetase)
chr9	6204115	6212666	6204219	6211420	+	PYR7	Cre09.g406050.t1.2		6204115,6204423,6204581,6205124,6205493,6206273,6207000,6207455,6207917,6208478,6208973,6209545,6209997,6210504,6210904,6211317	6204346,6204502,6204667,6205174,6205606,6206381,6207130,6207544,6208046,6208634,6209111,6209686,6210087,6210615,6211028,6212666	CTP synthase (UTP-ammonia lyase); CTPS or PYRG; URA7 and URA8 in yeast; contains a stretch of 9 His residues.  ts lethal mutations isolated (PMID 25336509)
chr9	6212859	6218234	6213364	6218035	-	Cre09.g406100.t1.2	Cre09.g406100.t1.2		6217192,6214234,6212859	6218234,6216777,6213835	
chr9	6218344	6221924	6219495	6221679	-	Cre09.g406150.t1.1	Cre09.g406150.t1.1		6221352,6220729,6220309,6219827,6218344	6221924,6221138,6220425,6219928,6219583	null-allele passenger mutation was isolated (PMID 29743196)
chr9	6222395	6231156	6222669	6230473	+	PRORS1	Cre09.g406200.t1.2		6222395,6223729,6224096,6224932,6225365,6225888,6226412,6226824,6227189,6227671,6228009,6228388,6228743,6229145,6229692,6230300	6222873,6223861,6224202,6225010,6225441,6225998,6226553,6226879,6227281,6227769,6228113,6228453,6228809,6229206,6229803,6231156	
chr9	6231159	6236364	6231664	6236117	-	Cre09.g406250.t1.1	Cre09.g406250.t1.1		6231874,6231159	6236364,6231664	
chr9	6237369	6243304	6238028	6243277	-	Cre09.g406300.t1.2	Cre09.g406300.t1.2		6242973,6242669,6241805,6241415,6240523,6239782,6239048,6238595,6237369	6243304,6242764,6242149,6241485,6240693,6240111,6239320,6238691,6238222	
chr9	6243429	6248144	6243831	6247825	-	Cre09.g406350.t1.1	Cre09.g406350.t1.1		6247704,6247335,6247008,6246513,6246207,6245723,6245150,6243429	6248144,6247387,6247068,6246592,6246342,6245808,6245269,6244653	
chr9	6250674	6262754	6251207	6262465	-	CTP3	Cre09.g406400.t1.1		6262357,6261355,6260267,6259883,6259303,6258768,6258281,6257858,6257374,6256698,6256159,6254901,6253244,6252933,6251833,6250674	6262754,6261956,6261099,6260032,6259399,6258877,6258383,6258098,6257511,6256832,6256287,6255149,6254017,6253000,6252553,6251447	P-type ATPase superfamily, membrane protein, related to copper transporting P-type ATPases (HMA)
chr9	6262865	6267036	6263110	6267004	+	Cre09.g406416.t1.1	Cre09.g406416.t1.1		6262865,6263643,6264350,6264881,6265352,6266221,6266753	6263206,6264027,6264417,6265031,6265396,6266574,6267036	
chr9	6270769	6273884	6270849	6273627	-	Cre09.g406432.t1.1	Cre09.g406432.t1.1		6273554,6273268,6272426,6272110,6271616,6271351,6270769	6273884,6273423,6272551,6272262,6271891,6271467,6271001	
chr9	6270769	6273884	6270849	6273627	-	Cre09.g406432.t2.1	Cre09.g406432.t2.1		6273554,6273268,6272426,6272152,6271616,6271351,6270769	6273884,6273423,6272551,6272262,6271891,6271467,6271001	
chr9	6270769	6273044	6270849	6272794	-	Cre09.g406432.t3.1	Cre09.g406432.t3.1		6272773,6272426,6272110,6271616,6271351,6270769	6273044,6272486,6272262,6271891,6271467,6271001	
chr9	6273225	6275701	6273600	6274190	+	Cre09.g406448.t1.1	Cre09.g406448.t1.1		6273225,6274103	6273783,6275701	
chr9	6276295	6287446	6276447	6286834	+	Cre09.g406500.t1.1	Cre09.g406500.t1.1		6276295,6276987,6280133,6280708,6281250,6282084,6283030,6285046,6285703,6286768	6276819,6279923,6280290,6280894,6281813,6282704,6284748,6285275,6285799,6287446	
chr9	6276295	6287446	6276447	6286281	+	Cre09.g406500.t2.1	Cre09.g406500.t2.1		6276295,6276987,6280133,6280708,6281250,6282084,6283030,6285046,6285703,6286215	6276819,6279923,6280290,6280894,6281813,6282704,6284748,6285275,6285799,6287446	
chr9	6287495	6293486	6287575	6292926	+	RPP40	Cre09.g406550.t1.2		6287495,6288061,6288707,6289175,6289732,6290135,6291170,6291773,6292438,6292698	6287779,6288141,6288842,6289242,6289767,6290221,6291590,6291858,6292500,6293486	Involved in tRNA 5'-end maturation; identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr9	6293593	6300320	6295628	6300255	-	Cre09.g406600.t1.1	Cre09.g406600.t1.1		6300134,6299675,6299024,6298596,6298089,6297737,6297284,6296810,6296213,6293593	6300320,6299707,6299136,6298698,6298141,6297795,6297432,6296967,6296344,6295772	
chr9	6303075	6308033	6303739	6307413	+	Cre09.g406625.t1.1	Cre09.g406625.t1.1		6303075,6303984,6304287,6304679,6304917,6305776,6306370,6307413	6303845,6304136,6304412,6304765,6305036,6305923,6306503,6308033	
chr9	6308039	6317824	6308589	6317584	-	Cre09.g406650.t1.2	Cre09.g406650.t1.2		6317575,6315643,6314951,6314498,6311152,6310263,6309693,6309215,6308039	6317824,6317265,6315073,6314549,6313944,6310887,6309747,6309334,6308892	null-allele passenger mutation was isolated (PMID 29743196)
chr9	6317879	6334154	6319116	6333378	-	Cre09.g406700.t1.1	Cre09.g406700.t1.1		6333305,6332987,6331767,6331429,6331165,6330919,6330546,6329933,6329316,6328925,6328335,6328022,6327717,6326973,6326330,6325978,6325431,6324924,6324554,6324217,6323701,6323076,6322473,6322027,6321409,6320172,6317879	6334154,6333135,6332801,6331540,6331259,6330983,6330640,6330076,6329425,6329075,6328381,6328138,6327776,6327284,6326404,6326122,6325524,6324999,6324643,6324389,6323828,6323329,6322737,6322276,6321716,6321179,6319358	
chr9	6334304	6341868	6334793	6341812	-	Cre09.g406750.t1.1	Cre09.g406750.t1.1		6341785,6340964,6340418,6340175,6339486,6339141,6338858,6337709,6337218,6336428,6335668,6335285,6334304	6341868,6341533,6340455,6340239,6339947,6339220,6338932,6338621,6337417,6336853,6335710,6335426,6335067	
chr9	6334304	6341868	6334793	6341812	-	Cre09.g406750.t2.1	Cre09.g406750.t2.1		6341785,6340964,6340418,6340175,6339511,6339141,6338858,6337709,6337218,6336428,6335668,6335285,6334304	6341868,6341533,6340455,6340239,6339947,6339209,6338932,6338621,6337417,6336853,6335710,6335426,6335067	
chr9	6341979	6344291	6342200	6343874	+	SPC18	Cre09.g406800.t1.1		6341979,6342377,6342714,6343122,6343762	6342282,6342444,6342911,6343210,6344291	18 kDa subunit of the ER signal peptidase; involved in processing signal peptides from ER-targeted proteins
chr9	6344739	6353251	6345199	6352257	+	CDH1	Cre09.g406851.t1.1		6344739,6345403,6345724,6346139,6346602,6348613,6349263,6349896,6350280,6351478,6352093	6345241,6345483,6345779,6346289,6346724,6348786,6349388,6350012,6350405,6351595,6353251	Activator and specificity factor for anaphase promoting complex. Cell cycle regulated E3 ubiquitin ligase. Related to CCS52 family from plants. Similar to CDC2/CCS52/fizzy related/Cdh1 family.
chr9	6353439	6357960	6353504	6357511	+	Cre09.g406900.t1.2	Cre09.g406900.t1.2		6353439,6354311,6355775,6356287,6356614,6357407	6353663,6354434,6355934,6356394,6357011,6357960	
chr9	6357973	6364208	6358425	6363909	-	Cre09.g406950.t1.1	Cre09.g406950.t1.1		6363888,6362320,6361613,6361093,6360335,6359638,6357973	6364208,6363630,6362066,6361362,6360798,6359741,6359239	
chr9	6364353	6369068	6364970	6369023	-	Cre09.g406983.t1.1	Cre09.g406983.t1.1		6368897,6368265,6367750,6367278,6366823,6366544,6365437,6364353	6369068,6368348,6367889,6367372,6366989,6366615,6365538,6365021	
chr9	6414113	6415742	6414328	6415633	-	Cre09.g407016.t1.1	Cre09.g407016.t1.1		6415578,6415279,6414968,6414113	6415742,6415458,6415049,6414419	
chr9	6417251	6427088	6417619	6426702	-	MMP24	Cre09.g407050.t1.2		6426647,6426419,6424860,6424477,6423898,6423052,6422520,6421844,6421487,6421218,6420874,6420282,6419833,6419462,6418838,6418483,6418102,6417251	6427088,6426478,6425146,6424549,6424001,6423163,6422695,6422023,6421589,6421279,6420926,6420381,6419979,6419598,6418891,6418594,6418261,6417765	Matrix metalloproteinase belonging to the M11 peptidase family
chr9	6430969	6435144	6431140	6434601	+	MRPS5	Cre09.g407100.t1.1		6430969,6431404,6431706,6432194,6432508,6432971,6433539,6434045,6434460	6431311,6431457,6431786,6432342,6432661,6433036,6433691,6434182,6435144	
chr9	6430969	6435144	6431140	6434601	+	MRPS5	Cre09.g407100.t2.1		6430969,6431404,6431739,6432194,6432508,6432971,6433539,6434045,6434460	6431311,6431457,6431786,6432342,6432661,6433036,6433691,6434182,6435144	
chr9	6435289	6442630	6435342	6441738	+	Cre09.g407110.t1.1	Cre09.g407110.t1.1		6435289,6435655,6436317,6436865,6437457,6437922,6438788,6439015,6439339,6441657	6435567,6435725,6436570,6436952,6437581,6438034,6438829,6439210,6440981,6442630	
chr9	6443264	6450998	6444526	6450219	-	Cre09.g407120.t1.2	Cre09.g407120.t1.2		6448728,6443264	6450998,6448540	
chr9	6451150	6460268	6451893	6460176	-	Cre09.g407150.t1.1	Cre09.g407150.t1.1		6460071,6459962,6459613,6459316,6458669,6458272,6457808,6457446,6456980,6456431,6455351,6454932,6453767,6453129,6452409,6451150	6460268,6459997,6459663,6459363,6458873,6458430,6458038,6457516,6457234,6456564,6456208,6455010,6454491,6453327,6452750,6452151	
chr9	6460369	6469508	6460621	6468712	+	Cre09.g407200.t1.2	Cre09.g407200.t1.2		6460369,6461232,6462084,6462584,6462920,6463232,6463790,6464479,6465017,6465491,6465882,6466476,6466943,6467274,6467564,6468173,6468502	6460901,6461303,6462196,6462631,6462997,6463294,6463909,6464547,6465118,6465580,6466139,6466586,6466997,6467340,6467618,6468307,6469508	Phytoene dehydrogenase
chr9	6469569	6472457	6469697	6471370	+	FAP270	Cre09.g407250.t1.2		6469569,6469850,6470461,6471294	6469761,6470015,6470604,6472457	Hypothetical Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome
chr9	6469569	6472457	6469697	6471370	+	FAP270	Cre09.g407250.t2.1		6469569,6469675,6469850,6470461,6471294	6469594,6469761,6470015,6470604,6472457	Hypothetical Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome
chr9	6477193	6485558	6477928	6485320	-	Cre09.g407300.t1.1	Cre09.g407300.t1.1		6485129,6484752,6484311,6483618,6483105,6482551,6482183,6481839,6481476,6481261,6480061,6479759,6478844,6477193	6485558,6484908,6484386,6483960,6483262,6482737,6482242,6481906,6481510,6481335,6480138,6479894,6478917,6478156	
chr9	6485768	6489988	6486140	6489922	-	Cre09.g407350.t1.1	Cre09.g407350.t1.1		6489625,6489178,6488825,6488539,6488066,6487719,6487292,6486961,6486577,6485768	6489988,6489226,6488898,6488583,6488185,6487778,6487371,6487033,6486687,6486296	Related to GCN5; a SOUL heme-binding protein with chaperonin Cpn6 conserved site.  May have acetyl-CoA carboxylase activity
chr9	6490043	6494818	6490420	6494637	-	Cre09.g407373.t1.2	Cre09.g407373.t1.2		6494589,6494248,6493806,6493083,6492487,6490043	6494818,6494321,6493920,6493229,6492566,6491978	
chr9	6494873	6498338	6495060	6498032	-	Cre09.g407400.t1.1	Cre09.g407400.t1.1		6497981,6497124,6496758,6494873	6498338,6497870,6496850,6496590	
chr9	6498459	6503640	6498870	6502211	+	Cre09.g407450.t1.2	Cre09.g407450.t1.2		6498459,6499235,6499572,6500237,6500773,6501184,6501679,6502067	6498990,6499392,6499976,6500453,6500835,6501267,6501846,6503640	
chr9	6504481	6510318	6506857	6510040	-	Cre09.g407501.t1.2	Cre09.g407501.t1.2		6509992,6509828,6509539,6509096,6504481	6510318,6509903,6509698,6509201,6508840	
chr9	6510759	6517290	6510945	6516480	+	Cre09.g407550.t1.2	Cre09.g407550.t1.2		6510759,6511062,6511343,6511736,6512233,6512746,6513317,6514288,6514523,6515923,6516321	6510963,6511139,6511512,6511917,6512536,6513145,6514056,6514333,6515599,6515979,6517290	
chr9	6517339	6520690	6517543	6520184	+	Cre09.g407600.t1.2	Cre09.g407600.t1.2		6517339,6518076,6519180,6519731,6520025	6517642,6518219,6519419,6519796,6520690	Belongs to TenA family, with homology to Neurospora THI-4 protein involved in the condensation of pyrimidine and thiazole precursors (PMID: 8662211)
chr9	6520693	6523738	6521606	6523613	-	Cre09.g407650.t1.2	Cre09.g407650.t1.2		6523573,6523324,6522979,6522452,6522041,6520693	6523738,6523403,6523147,6522543,6522097,6521738	
chr9	6523869	6529029	6524027	6527906	+	CEP1	Cre09.g407700.t1.2		6523869,6524998,6525325,6525983,6526433,6526792,6527316,6527789	6524531,6525045,6525531,6526091,6526584,6527013,6527462,6529029	Cysteine endopeptidases (EC 3.4.22), C1A family (papain-type); similar to protease component of protease-inhibitor complex of Zea mays BAA88898.1; contains N-terminal cathepsin propeptide inhibitor domain (I29) and C-terminal granulin (Cys-rich) domain
chr9	6530291	6531830	6530421	6531274	+	CGL130	Cre09.g407750.t1.2		6530291,6530585,6530790,6531223	6530469,6530692,6530909,6531830	
chr9	6531878	6541309	6532033	6540639	+	AKC1	Cre09.g407801.t1.1		6531878,6533372,6533929,6534262,6534570,6535294,6535679,6536979,6537382,6538231,6538916,6539489,6540010,6540579	6532289,6533511,6534003,6534297,6534665,6535394,6535769,6537054,6537515,6538302,6538994,6539619,6540078,6541309	Conserved expressed protein related to ABC1/COQ8 putative ser/thr kinase; ABC1 kinase family protein of unknown function; similar to Arabidopsis At5g52000 associated with plastoglobules
chr9	6541352	6545097	6542323	6544995	-	Cre09.g407850.t1.2	Cre09.g407850.t1.2		6544866,6544533,6543928,6543461,6543160,6542907,6541352	6545097,6544595,6544051,6543499,6543208,6542978,6542723	
chr9	6545258	6551539	6545533	6550504	+	Cre09.g407900.t1.2	Cre09.g407900.t1.2		6545258,6545891,6546593,6546899,6547301,6547644,6548006,6548498,6549197,6549631,6550363	6545635,6546016,6546689,6546991,6547391,6547780,6548092,6548581,6549345,6549756,6551539	
chr9	6551678	6555128	6552500	6554488	+	Cre09.g407950.t1.2	Cre09.g407950.t1.2		6551678,6552277,6552861,6553076,6553635,6553882,6554364	6551850,6552742,6552896,6553270,6553695,6554054,6555128	
chr9	6555418	6558624	6555617	6558238	+	Cre09.g408000.t1.1	Cre09.g408000.t1.1		6555418,6556358,6556670,6557171,6557532,6558105	6555841,6556393,6556873,6557231,6557704,6558624	
chr9	6558858	6565209	6559058	6564967	+	Cre09.g408051.t1.1	Cre09.g408051.t1.1		6558858,6559774,6560670,6561145,6561451,6562510,6563191,6563831,6564433	6559569,6559889,6560717,6561207,6561541,6562610,6563268,6564112,6565209	May contain additional coding sequence in intronic N-island PMID: 27175017
chr9	6565415	6569577	6566058	6569487	-	Cre09.g408100.t1.2	Cre09.g408100.t1.2		6569346,6568744,6568249,6567941,6567622,6566760,6565415	6569577,6568878,6568358,6568001,6567688,6567183,6566194	
chr9	6570188	6571817	6570752	6571574	-	Cre09.g408150.t1.2	Cre09.g408150.t1.2		6571545,6570188	6571817,6571407	
chr9	6572158	6574719	6573264	6574607	-	SRS4	Cre09.g408200.t1.2		6574541,6574417,6573966,6573542,6572158	6574719,6574468,6574028,6573839,6573388	putative SR (serine/arginine rich) protein; Similar to Arabidopsis splicing factor RSZp22 (RSZP22); contains Pfam profiles PF00076: RNA recognition motif. (RRM, RBD, or RNP domain) and PF00098: Zinc knuckle. Belongs to human 9G8 protein family
chr9	6574848	6581969	6574910	6581524	+	EEF1A2	Cre09.g408250.t1.1		6574848,6575442,6576058,6576845,6577263,6577728,6578642,6579238,6579620,6580081,6580812,6581290	6575111,6575648,6576180,6576952,6577475,6578297,6578833,6579342,6579662,6580133,6580961,6581969	EF-1-alpha
chr9	6582138	6584200	6582259	6583638	+	Cre09.g408300.t1.2	Cre09.g408300.t1.2		6582138,6582683,6583046,6583369,6583614	6582295,6582802,6583104,6583396,6584200	
chr9	6586968	6592409	6587827	6590495	+	Cre09.g408350.t1.2	Cre09.g408350.t1.2		6586968,6587746,6588386,6589599,6590228	6587502,6588015,6588581,6589907,6592409	
chr9	6592542	6597907	6593971	6597554	-	Cre09.g408400.t1.1	Cre09.g408400.t1.1		6592542	6597907	, contains MYND zinc-finger domain
chr9	6599092	6602767	6599415	6602477	-	Cre09.g408428.t1.2	Cre09.g408428.t1.2		6602207,6601437,6600997,6600663,6600107,6599092	6602767,6601856,6601134,6600815,6600262,6599826	
chr9	6602928	6611533	6603389	6610976	+	Cre09.g408464.t1.1	Cre09.g408464.t1.1		6602928,6604213,6604506,6605032,6605510,6606069,6606521,6606961,6607204,6607526,6607901,6608719,6609246,6609664,6610019,6610726	6603665,6604285,6604590,6605169,6605592,6606152,6606613,6607038,6607249,6607640,6608000,6608910,6609355,6609750,6610143,6611533	
chr9	6611586	6617837	6612330	6617712	-	Cre09.g408500.t1.1	Cre09.g408500.t1.1		6617633,6616759,6616306,6615888,6615294,6614835,6614155,6613757,6613375,6613031,6611586	6617837,6616973,6616411,6615951,6615384,6614928,6614329,6613857,6613460,6613162,6612636	
chr9	6618178	6622029	6618347	6621633	+	Cre09.g408550.t1.2	Cre09.g408550.t1.2		6618178,6618578,6619075,6619480,6619948,6620330,6620780,6621202	6618436,6618629,6619196,6619624,6620043,6620461,6620888,6622029	
chr9	6622076	6624920	6622301	6624266	+	Cre09.g408600.t1.2	Cre09.g408600.t1.2		6622076,6622927,6623325,6623761,6624128	6622559,6623129,6623466,6623859,6624920	
chr9	6626181	6627397	6626401	6626678	-	Cre09.g408626.t1.1	Cre09.g408626.t1.1		6626181	6627397	
chr9	6627528	6639702	6628245	6636751	+	Cre09.g408650.t1.1	Cre09.g408650.t1.1		6627528,6628150,6629525,6630163,6630926,6635084,6635582,6635988,6636712	6627784,6628983,6629731,6630555,6634945,6635380,6635716,6636518,6639702	
chr9	6640008	6649469	6640406	6649379	+	Cre09.g408676.t1.1	Cre09.g408676.t1.1		6640008,6644708,6646617	6644312,6646532,6649469	
chr9	6649612	6651917	6650398	6651839	-	Cre09.g408700.t1.2	Cre09.g408700.t1.2		6651547,6651227,6650962,6649612	6651917,6651273,6651010,6650655	
chr9	6652009	6654439	6652507	6653774	+	Cre09.g408750.t1.2	Cre09.g408750.t1.2		6652009,6652501,6653049,6653298,6653659	6652305,6652651,6653155,6653393,6654439	
chr9	6654442	6657627	6655492	6657372	-	Cre09.g408800.t1.2	Cre09.g408800.t1.2		6657342,6656698,6656253,6655790,6654442	6657627,6656868,6656289,6655869,6655555	
chr9	6657731	6665406	6657830	6665397	+	Cre09.g408825.t1.1	Cre09.g408825.t1.1		6657731,6658443,6658751,6659162,6659516,6660201,6661117,6661653,6661964,6662322,6662748,6664631,6665268	6657896,6658520,6658866,6659314,6659594,6660263,6661245,6661727,6662044,6662432,6663761,6664747,6665406	
chr9	6702038	6709599	6702065	6708908	+	Cre09.g408851.t1.1	Cre09.g408851.t1.1		6702038,6702417,6703054,6703310,6703772,6704217,6705166,6705506,6705837,6706349,6706682,6707643,6708052,6708399,6708842	6702095,6702533,6703101,6703417,6703888,6704303,6705224,6705586,6705993,6706452,6706784,6707737,6708106,6708497,6709599	May contain additional coding sequence PMID: 27175017
chr9	6702038	6709599	6702065	6708908	+	Cre09.g408851.t2.1	Cre09.g408851.t2.1		6702038,6703054,6703310,6703772,6704217,6705166,6705506,6705837,6706349,6706682,6707643,6708052,6708399,6708842	6702095,6703101,6703417,6703888,6704303,6705224,6705586,6705993,6706452,6706784,6707737,6708106,6708497,6709599	May contain additional coding sequence PMID: 27175017
chr9	6710091	6716884	6710643	6716669	-	Cre09.g408900.t1.2	Cre09.g408900.t1.2		6715929,6715148,6714719,6714090,6713422,6712757,6712329,6711655,6711086,6710091	6716884,6715596,6714951,6714438,6713785,6712862,6712403,6711935,6711272,6710829	
chr9	6716985	6734506	6717328	6733331	+	Cre09.g408950.t1.1	Cre09.g408950.t1.1		6716985,6717984,6721651,6722002,6722840,6723784,6725903,6726482,6727488,6727810,6728397,6728980,6729996,6730557,6730893,6731250,6731819	6717505,6721379,6721783,6722588,6723507,6725743,6726163,6727240,6727623,6728216,6728688,6729425,6730354,6730656,6730987,6731430,6734506	
chr9	6734509	6737774	6734662	6737459	-	Cre09.g409000.t1.1	Cre09.g409000.t1.1		6737217,6735655,6735393,6734509	6737774,6736810,6735497,6735172	
chr9	6737875	6742084	6738691	6741938	-	OTU6	Cre09.g409050.t1.2		6741883,6741569,6741318,6740868,6740539,6740046,6739677,6739330,6738965,6737875	6742084,6741678,6741437,6741162,6740684,6740191,6739738,6739484,6739048,6738754	Conserved expressed organelle-targeted protein.  Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila.
chr9	6742185	6746552	6742350	6745784	+	UROS1	Cre09.g409100.t1.2		6742185,6742672,6743310,6743908,6744373,6744880,6745173,6745622	6742405,6742861,6743427,6743988,6744471,6744933,6745301,6746552	
chr9	6746915	6747904	6746998	6747596	+	QCR10	Cre09.g409150.t1.2		6746915,6747269,6747545	6747031,6747364,6747904	Subunit 10 of mitochondrial Complex III (ubiquinol:cytochrome c oxidoreductase) [PMID: 15710684]; homolog of human QCRXI, bovine subunit 6.4 kD and yeast QCR10)
chr9	6748087	6752574	6749057	6752351	-	Cre09.g409200.t1.2	Cre09.g409200.t1.2		6752127,6751862,6751428,6750797,6748087	6752574,6751951,6751551,6750952,6750629	Putative pre-mRNA splicing factor related to Cwf21 splicing factor and serine/arginine repetitive matrix (SRRM2) protein
chr9	6752679	6759646	6752730	6758988	+	GTR24	Cre09.g409250.t1.2		6752679,6752989,6753593,6754095,6756013,6756727,6757148,6757537,6758269,6758724	6752757,6753298,6753824,6755353,6756191,6756830,6757308,6757971,6758531,6759646	glycosyl transferase; ceramide glucosyltransferase
chr9	6759695	6766259	6759831	6765538	+	Cre09.g409300.t1.2	Cre09.g409300.t1.2		6759695,6760060,6760475,6760971,6761264,6761576,6761896,6762136,6762547,6762877,6763295,6763615,6764002,6764364,6764880,6765312	6759927,6760160,6760589,6761029,6761327,6761657,6761925,6762248,6762653,6763009,6763354,6763695,6764139,6764567,6764995,6766259	null-allele passenger mutation was isolated (PMID 29743196)
chr9	6766785	6770654	6769411	6769595	-	Cre09.g409325.t1.1	Cre09.g409325.t1.1		6769908,6766785	6770654,6769796	
chr9	6771241	6782454	6772328	6782137	-	RLI1	Cre09.g409350.t1.2		6782063,6781883,6781701,6780089,6779693,6779339,6778744,6777409,6776232,6775828,6775409,6775095,6774740,6774388,6773906,6773391,6772844,6771241	6782454,6781941,6781786,6780186,6779810,6779392,6778818,6777498,6776378,6775973,6775562,6775202,6774802,6774489,6773989,6773492,6772997,6772471	Essential Fe-S protein required for ribosome biogenesis and translation initiation. ABC-type ATPase.
chr9	6782875	6789716	6783024	6788818	+	Cre09.g409426.t1.1	Cre09.g409426.t1.1		6782875,6783423,6783693,6784495,6785047,6786003,6787311,6787709	6783144,6783471,6783778,6784635,6785839,6786952,6787389,6789716	null-allele passenger mutation was isolated (PMID 29743196)
chr9	6789719	6794324	6790934	6794096	-	Cre09.g409500.t1.2	Cre09.g409500.t1.2		6794015,6793700,6793427,6793140,6791785,6791408,6789719	6794324,6793804,6793451,6793261,6791880,6791634,6791277	
chr9	6794435	6798626	6794465	6798129	+	Cre09.g409550.t1.1	Cre09.g409550.t1.1		6794435,6795207,6795411,6795815,6796434,6796989	6794721,6795288,6795633,6796028,6796735,6798626	
chr9	6798667	6802144	6799562	6801924	-	Cre09.g409600.t1.1	Cre09.g409600.t1.1		6801711,6801072,6800231,6798667	6802144,6801320,6800289,6799878	
chr9	6802275	6805440	6802346	6803551	+	Cre09.g409650.t1.2	Cre09.g409650.t1.2		6802275,6802620,6803357	6802522,6802873,6805440	
chr9	6805597	6809104	6806019	6809040	-	Cre09.g409700.t1.2	Cre09.g409700.t1.2		6808954,6808648,6808138,6807650,6807158,6806715,6806366,6805597	6809104,6808738,6808212,6807724,6807253,6806759,6806563,6806085	
chr9	6818865	6821856	6818954	6819405	+	Cre09.g409728.t1.2	Cre09.g409728.t1.2		6818865	6821856	
chr9	6828915	6836280	6829411	6835545	+	CAX2	Cre09.g409750.t1.1		6828915,6829314,6829992,6831354,6832009,6832560,6833144,6833410,6834041,6834430,6835110,6835446	6829210,6829597,6830087,6831474,6832081,6832697,6833195,6833537,6834076,6834537,6835257,6836280	CAX family of Cation antiporters, membrane protein. Putative Ca2+/H+ antiporter [PMID: 15710683], related to fungi and plants Ca2+/H+ antiporters (CAX); related to yeast VCX1 (or Manganese resistance 1)
chr9	6836439	6846094	6837320	6845666	-	Cre09.g409801.t1.1	Cre09.g409801.t1.1		6845609,6844531,6844088,6843124,6842857,6842543,6842085,6841847,6841322,6840935,6840482,6840044,6839725,6839368,6838819,6838277,6836439	6846094,6845273,6844229,6843211,6842974,6842614,6842177,6841943,6841422,6841025,6840552,6840208,6839779,6839493,6838905,6838447,6837818	
chr9	6846215	6847648	6846328	6847224	+	Cre09.g409850.t1.2	Cre09.g409850.t1.2		6846215,6847062	6846697,6847648	
chr9	6848947	6852664	6850837	6852056	-	PHC57	Cre09.g409901.t1.1		6852036,6851893,6848947	6852664,6851981,6851670	
chr9	6852825	6855906	6852949	6855554	+	Cre09.g409951.t1.1	Cre09.g409951.t1.1		6852825,6853298,6853886,6854147,6854493,6854929,6855248	6853211,6853437,6853933,6854248,6854568,6855008,6855906	Involved in 16S rRNA processing
chr9	6856625	6861866	6856831	6861315	+	Cre09.g410000.t1.1	Cre09.g410000.t1.1		6856625,6856987,6857434,6857803,6858221,6858929,6859276,6860249,6860586	6856836,6857115,6857466,6857909,6858285,6858973,6859857,6860341,6861866	
chr9	6861869	6873004	6863554	6872817	-	Cre09.g410050.t1.2	Cre09.g410050.t1.2		6872451,6871181,6870846,6870449,6870260,6870028,6869577,6869301,6868615,6868319,6867686,6867345,6866970,6866451,6866150,6865869,6865506,6865026,6864621,6864261,6861869	6873004,6871292,6870892,6870556,6870301,6870116,6869685,6869420,6868783,6868443,6868183,6867451,6867211,6866701,6866260,6865997,6865568,6865139,6864805,6864348,6864097	High homology to bacterial genes; related to Cation-transporting ATPase pma1
chr9	6873155	6875716	6873408	6874528	+	Cre09.g410087.t1.2	Cre09.g410087.t1.2		6873155,6874314	6873443,6875716	
chr9	6876445	6885326	6876827	6884700	+	Cre09.g410100.t1.2	Cre09.g410100.t1.2		6876445,6876820,6877465,6877808,6878061,6878314,6878500,6878809,6879083,6879476,6879835,6880109,6880839,6881094,6881618,6882016,6882280,6882738,6883050,6883416,6883753,6884163	6876604,6877184,6877576,6877854,6878168,6878355,6878588,6878917,6879202,6879644,6879959,6880606,6880945,6881335,6881910,6882126,6882408,6882800,6883163,6883600,6883840,6885326	Related to probable cation-transporting ATPase F and related to Cation-transporting ATPase pma1. Note relationship to bacterial homologs (gram positives and cyanobacteria)
chr9	6886095	6891156	6887504	6889923	+	Cre09.g410150.t1.1	Cre09.g410150.t1.1		6886095,6887007,6887499,6887813,6888042,6888462,6889035,6889504	6886790,6887139,6887601,6887863,6888217,6888665,6889269,6891156	
chr9	6891893	6899369	6892671	6898793	-	Cre09.g410200.t1.2	Cre09.g410200.t1.2		6899125,6898735,6898232,6897883,6897343,6896844,6896493,6896217,6895418,6891893	6899369,6898878,6898324,6897937,6897542,6897106,6896583,6896281,6895795,6895068	
chr9	6899488	6901926	6899638	6901037	+	Cre09.g410250.t1.1	Cre09.g410250.t1.1		6899488,6900164,6900983	6899662,6900652,6901926	
chr9	6902580	6917221	6902766	6916554	+	Cre09.g410300.t1.1	Cre09.g410300.t1.1		6902580,6902935,6903217,6903511,6904169,6904724,6905848,6906884,6907521,6908503,6909186,6910059,6911043,6911622,6912269,6912899,6913512,6913802,6914333,6914694,6915789	6902843,6902999,6903330,6903752,6904245,6905506,6906619,6907283,6908219,6908882,6909769,6910147,6911122,6911696,6912692,6913147,6913669,6914036,6914394,6914762,6917221	
chr9	6917620	6927259	6919673	6924740	+	Cre09.g410332.t1.2	Cre09.g410332.t1.2		6917620,6918687,6919275,6919437,6920512,6921015,6921446,6922097,6922368	6918339,6918769,6919319,6920257,6920611,6921071,6921572,6922168,6927259	
chr9	6927401	6931179	6927649	6930977	-	Cre09.g410350.t1.1	Cre09.g410350.t1.1		6930155,6929259,6928632,6927401	6931179,6929922,6929048,6928278	
chr9	6931300	6934776	6931935	6933553	+	Cre09.g410400.t1.1	Cre09.g410400.t1.1		6931300,6931779	6931531,6934776	
chr9	6937372	6942427	6937469	6939902	+	ROC15	Cre09.g410450.t1.2		6937372,6938611,6939278	6938322,6939029,6942427	Myb-like transcription factor, involved in light resetting of the circadian clock; mutant has long period (LP) phenotype
chr9	6942584	6958299	6942815	6957680	-	PAP11	Cre09.g410500.t1.1		6958105,6957382,6956991,6956477,6956332,6955237,6954604,6954244,6953478,6952951,6952511,6952013,6951242,6950537,6949836,6948687,6948083,6947572,6947192,6945933,6944968,6942584	6958299,6957753,6957170,6956592,6956367,6955927,6954713,6954353,6954018,6953022,6952567,6952291,6951688,6950841,6950205,6949376,6948184,6947685,6947365,6946963,6945738,6944448	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; conserved in green algae
chr9	6942584	6958299	6942815	6957680	-	PAP11	Cre09.g410500.t2.1		6958105,6957382,6956991,6956477,6955237,6954604,6954244,6953478,6952951,6952511,6952013,6951242,6950537,6949836,6948687,6948083,6947572,6947192,6945933,6944968,6942584	6958299,6957753,6957170,6956592,6955927,6954713,6954353,6954018,6953022,6952567,6952291,6951688,6950841,6950205,6949376,6948184,6947685,6947365,6946963,6945738,6944448	Non-canonical poly(A) polymerase (ncPAP) with PAP/25A core domain; conserved in green algae
chr9	6964434	6966989	6965633	6966870	-	Cre09.g410600.t1.1	Cre09.g410600.t1.1		6966570,6964434	6966989,6966419	
chr9	6958405	6971138	6958531	6970390	+	HIS1	Cre09.g410650.t1.2		6958405,6960890,6961719,6962042,6962758,6963227,6968083,6968650,6969175,6969675,6970243	6958733,6960984,6961778,6962234,6962876,6963316,6968208,6968708,6969256,6969797,6971138	performs the first step in the histidine biosynthesis pathway, the condensation of ATP with PRPP to form phosphoribosyl-ATP; the HIS1 gene contains within one of its internal introns a gene for a Protein phosphatase 2C, encoded on the other strand
chr9	6958405	6964431	6958531	6964382	+	HIS1	Cre09.g410650.t2.1		6958405,6960890,6961719,6962042,6962758,6963227,6964301	6958733,6960984,6961778,6962234,6962876,6963316,6964431	performs the first step in the histidine biosynthesis pathway, the condensation of ATP with PRPP to form phosphoribosyl-ATP; the HIS1 gene contains within one of its internal introns a gene for a Protein phosphatase 2C, encoded on the other strand
chr9	6967090	6971138	6967749	6970390	+	HIS1	Cre09.g410650.t3.1		6967090,6968083,6968650,6969175,6969675,6970243	6967758,6968208,6968708,6969256,6969797,6971138	performs the first step in the histidine biosynthesis pathway, the condensation of ATP with PRPP to form phosphoribosyl-ATP; the HIS1 gene contains within one of its internal introns a gene for a Protein phosphatase 2C, encoded on the other strand
chr9	6972202	6977667	6973800	6977530	-	MDY5	Cre09.g410700.t1.2		6977499,6977286,6977124,6976838,6976591,6976032,6975225,6974587,6972202	6977667,6977428,6977216,6976969,6976725,6976268,6975317,6974780,6973990	Malate dehydrogenase [NADP], possibly plastidic (NADP-MDH); GI:1969739; Found in the flagellar proteome
chr9	6978922	6984869	6980060	6984396	-	NII1	Cre09.g410750.t1.2		6983979,6983392,6983012,6982649,6982213,6981383,6981105,6980839,6980500,6978922	6984869,6983697,6983137,6982776,6982342,6981683,6981157,6980928,6980622,6980156	nitrite reductase structural gene (Nii1) [GI:3776043, PMID: 9737004]
chr9	6986662	6990589	6987442	6990203	-	NRT2.2	Cre09.g410800.t1.2		6990114,6989597,6988852,6988158,6987749,6986662	6990589,6989790,6989320,6988640,6987961,6987536	high affinity nitrate transporter (system II) also called NAR4; needs NAR2 to function in vitro [PMID: 11289304]
chr9	6991287	6995219	6992395	6995064	-	NRT2.1	Cre09.g410850.t1.2		6994930,6994528,6993876,6993174,6992728,6991287	6995219,6994721,6994344,6993656,6992940,6992498	
chr9	6995340	6997448	6995515	6996663	+	NAR2	Cre09.g410900.t1.2		6995340,6995795,6996306	6995627,6996105,6997448	collaborates with upstream NAR3/4 (NRT2;1/2) to build High Affinity Nitrate/nitrite Transport systems (PMID: 18310352); is found within the gene cluster for mitrate/nitrite assimilation
chr9	6998940	7006736	6999536	7005849	+	NIT1	Cre09.g410950.t1.2		6998940,7000139,7000865,7001409,7001793,7002036,7002431,7002705,7003043,7003558,7003900,7004390,7004710,7005019,7005404,7005641	6999809,7000447,7001016,7001520,7001862,7002167,7002564,7002829,7003331,7003661,7004162,7004508,7004862,7005125,7005502,7006736	E.C. 1.6.6.3, converts nitrate to nitrite, the first step in nitrate assimilation; this cytosolic enzyme contains a molybdopterin (MoCo) binding domain, a dimerization domain, a cytochrome B5, a FAD-binding and a NAD-binding domain [PMID: 2475871]; NIT1 (NIA1) is part of a gene cluster involved in nitrate assimilation [PMID: 8413188] and controlled by nitrate, ammonium and the NIT2 gene [PMID: 8111016]; the strain used in genome sequencing is a 137c derivative and contains nit1-137, a C>A point mutation at position 407053 changing a conserved H (involved in heme binding) to Q; it prevents both diaphorase activity and assembly of the enzyme, hence inter molecular complementation [PMID: 3442823]
chr9	7009624	7017965	7011012	7017579	-	Cre09.g411050.t1.1	Cre09.g411050.t1.1		7017107,7009624	7017965,7015856	
chr9	7018106	7020073	7018326	7019896	+	RPS10	Cre09.g411100.t1.2		7018106,7018232,7018554,7018901,7019528,7019818	7018135,7018378,7018701,7019054,7019617,7020073	Cytosolic 40S small ribosomal subunit protein S10
chr9	7018106	7020073	7018326	7019896	+	RPS10	Cre09.g411100.t2.1		7018106,7018317,7018554,7018901,7019528,7019818	7018135,7018378,7018701,7019054,7019617,7020073	Cytosolic 40S small ribosomal subunit protein S10
chr9	7020080	7026195	7020418	7026085	-	Cre09.g411150.t1.1	Cre09.g411150.t1.1		7024828,7024467,7023116,7022172,7021824,7021351,7020080	7026195,7024558,7024103,7022291,7022009,7021494,7020796	
chr9	7032207	7035704	7032900	7035656	-	TEF5	Cre09.g411200.t1.2		7035481,7035308,7035015,7034623,7033733,7033335,7032207	7035704,7035391,7035151,7034751,7033921,7033413,7033028	
chr9	7035780	7039045	7036359	7039007	-	Cre09.g411250.t1.1	Cre09.g411250.t1.1		7037504,7037002,7035780	7039045,7037107,7036598	
chr9	7039146	7043337	7039389	7042449	+	Cre09.g411300.t1.1	Cre09.g411300.t1.1		7039146,7039559,7039687,7040201,7040684,7041093,7041525,7041930	7039405,7039596,7039878,7040296,7040791,7041193,7041564,7043337	
chr9	7043456	7050477	7043707	7048943	+	Cre09.g411350.t1.1	Cre09.g411350.t1.1		7043456,7044001,7044741	7043717,7044444,7050477	
chr9	7050500	7053185	7051038	7053114	-	DAP1	Cre09.g411400.t1.2		7052485,7052084,7051791,7051458,7050500	7053185,7052151,7051915,7051532,7051086	
chr9	7053840	7059715	7054223	7059523	-	MOT45	Cre09.g411450.t1.2		7059457,7059198,7058781,7058331,7057553,7057105,7056291,7055939,7055424,7053840	7059715,7059284,7059068,7058442,7057647,7057172,7056612,7056079,7055521,7054974	similarity with Pre-rRNA processing protein with Pfam PIH1/Nop17 domain; May be required either for nucleolar retention or correct assembly of the C/D box snoRNP; identified by comparative genomics as being present only in organisms having motile cilia; mutated in pf13
chr9	7059836	7064312	7060058	7063378	+	URN4	Cre09.g411500.t1.1		7059836,7060439,7061008,7061583,7061952,7062426,7062962	7060239,7060698,7061351,7061726,7062059,7062553,7064312	
chr9	7059836	7064312	7060058	7063378	+	URN4	Cre09.g411500.t2.1		7059836,7060439,7061008,7061952,7062426,7062962	7060239,7060698,7061351,7062059,7062553,7064312	
chr9	7064366	7077384	7064816	7075391	+	Cre09.g411525.t1.1	Cre09.g411525.t1.1		7064366,7064814,7065374,7068159,7069365,7069998,7070126,7071571,7072248,7072511,7072911,7073649,7073950,7074104,7075285	7064586,7064871,7067949,7069181,7069814,7070027,7070516,7071881,7072328,7072589,7073523,7073686,7073978,7074243,7077384	
chr9	7064366	7077384	7064816	7075391	+	Cre09.g411525.t2.1	Cre09.g411525.t2.1		7064366,7065374,7068159,7069365,7069998,7070126,7071571,7072248,7072511,7072911,7073649,7073950,7074104,7075285	7064871,7067949,7069181,7069814,7070027,7070516,7071881,7072328,7072589,7073523,7073686,7073978,7074243,7077384	
chr9	7064366	7077384	7064816	7075391	+	Cre09.g411525.t3.1	Cre09.g411525.t3.1		7064366,7064814,7065377,7068159,7069365,7069998,7070126,7071571,7072248,7072511,7072911,7073649,7073950,7074104,7075285	7064586,7064871,7067949,7069181,7069814,7070027,7070516,7071881,7072328,7072589,7073523,7073686,7073978,7074243,7077384	
chr9	7077976	7088377	7078313	7086430	+	Cre09.g411600.t1.1	Cre09.g411600.t1.1		7077976,7078447,7078961,7079398,7079707,7079984,7080340	7078365,7078570,7078998,7079425,7079770,7080106,7088377	
chr9	7089296	7092687	7089744	7092666	+	Cre09.g411633.t1.1	Cre09.g411633.t1.1		7089296,7090197,7091080,7091690,7092247,7092630	7089960,7090814,7091139,7092019,7092378,7092687	
chr9	7092766	7096279	7093150	7093334	+	Cre09.g411666.t1.1	Cre09.g411666.t1.1		7092766	7096279	
chr9	7097190	7102145	7098184	7101879	-	Cre09.g411700.t1.1	Cre09.g411700.t1.1		7101728,7101416,7097190	7102145,7101514,7101198	
chr9	7102300	7106085	7103059	7105866	-	Cre09.g411751.t1.1	Cre09.g411751.t1.1		7105814,7105507,7104832,7104306,7103884,7102300	7106085,7105599,7105338,7104487,7104135,7103503	
chr9	7106186	7109814	7106551	7109384	+	Cre09.g411800.t1.1	Cre09.g411800.t1.1		7106186,7106519,7107377,7107630,7108751	7106413,7107079,7107439,7108523,7109814	
chr9	7106186	7109814	7106551	7109384	+	Cre09.g411800.t2.1	Cre09.g411800.t2.1		7106186,7106519,7107377,7107630,7108751	7106423,7107079,7107439,7108523,7109814	
chr9	7110030	7115735	7110840	7115401	-	Cre09.g411850.t1.1	Cre09.g411850.t1.1		7115369,7115210,7114992,7114717,7114495,7114202,7113822,7112796,7112170,7111064,7110030	7115735,7115288,7115062,7114749,7114535,7114300,7114042,7113677,7112310,7111987,7110855	
chr9	7115804	7116825	7116364	7116641	-	Cre09.g411876.t1.1	Cre09.g411876.t1.1		7115804	7116825	
chr9	7117084	7123025	7117718	7122670	-	SHMT3	Cre09.g411900.t1.1		7122561,7122366,7122167,7121885,7121435,7120233,7119798,7119269,7119019,7118526,7118165,7117084	7123025,7122451,7122214,7121995,7121579,7120397,7119894,7119428,7119105,7118660,7118299,7117904	Glycine/serine hydroxymethyltransferase-like protein (by homology to Arabidopsis gene AT4G32520)
chr9	7123993	7135445	7126100	7134509	-	Cre09.g411950.t1.1	Cre09.g411950.t1.1		7134683,7134503,7133816,7133344,7132920,7132377,7131814,7131085,7129169,7128739,7128183,7123993	7135445,7134512,7133859,7133431,7133045,7132599,7132007,7131579,7130850,7129000,7128452,7128002	
chr9	7138686	7149431	7138795	7147100	+	Cre09.g411975.t1.1	Cre09.g411975.t1.1		7138686,7138991,7139322,7141939,7142730,7143142,7145121,7147032	7138922,7139025,7141649,7142563,7142947,7144942,7146683,7149431	null-allele mutant was isolated (PMID 29743196)
chr9	7149906	7155467	7150140	7154689	+	Cre09.g412000.t1.1	Cre09.g412000.t1.1		7149906,7150918,7151316,7152017,7152602,7152970,7153375,7153794,7154575	7150497,7151031,7151385,7152140,7152669,7153062,7153448,7153922,7155467	
chr9	7156046	7162797	7156359	7162148	+	Cre09.g412050.t1.1	Cre09.g412050.t1.1		7156046,7157139,7157467,7158351,7161664,7161995	7156606,7157326,7157991,7161298,7161769,7162797	
chr9	7163422	7165425	7164039	7165259	-	PSAF	Cre09.g412100.t1.2		7164980,7164718,7164482,7163422	7165425,7164888,7164655,7164099	Chloroplast precursor; donnor side subunit, involved in plastocyanin docking
chr9	7168236	7179337	7168369	7178509	+	PPR11	Cre09.g412150.t1.1		7168236,7168774,7169224,7169507,7169801,7170389,7170839,7171467,7171922,7172540,7173068,7173440,7173930,7174279,7174712,7175184,7175550,7175959,7177327,7177820,7178302	7168628,7169024,7169304,7169664,7169948,7170457,7170943,7171630,7172054,7172824,7173193,7173523,7174059,7174379,7174824,7175241,7175690,7176033,7177413,7177939,7179337	
chr9	7179820	7191195	7180471	7190867	-	Cre09.g412175.t1.1	Cre09.g412175.t1.1		7189304,7188506,7188188,7187916,7187464,7187161,7186695,7186520,7185999,7185472,7185043,7184521,7183959,7183553,7183146,7181276,7179820	7191195,7188702,7188275,7188005,7187510,7187221,7186783,7186574,7186324,7185610,7185149,7184596,7184051,7183615,7183241,7182876,7180964	
chr9	7192000	7198281	7192479	7197876	+	Cre09.g412201.t1.1	Cre09.g412201.t1.1		7192000,7192359,7196282	7192083,7196102,7198281	null-allele passenger mutation was isolated (PMID 29743196)
chr9	7195660	7198281	7195689	7197876	+	Cre09.g412201.t2.1	Cre09.g412201.t2.1		7195660,7196282	7196102,7198281	null-allele passenger mutation was isolated (PMID 29743196)
chr9	7198287	7202959	7198983	7202835	-	Cre09.g412250.t1.1	Cre09.g412250.t1.1		7202658,7202117,7201833,7201214,7200563,7200231,7199807,7198287	7202959,7202317,7201871,7201339,7200746,7200266,7199840,7199419	
chr9	7203014	7206879	7203573	7206490	-	TIM16	Cre09.g412300.t1.2		7206487,7205855,7205449,7205141,7204715,7204166,7203825,7203014	7206879,7205942,7205507,7205185,7204771,7204225,7203899,7203651	TIM16, subunit of the presequence translocase-associated protein import complex (TIM23), which drives the completion of protein transport into the mitochondrial matrix. Also named PAM16
chr9	7207010	7218491	7207350	7217365	+	Cre09.g412350.t1.2	Cre09.g412350.t1.2		7207010,7207593,7207998,7208977,7209349,7209631,7210146,7210526,7210949,7211314,7211696,7212028,7212478,7213031,7214261,7214683,7215444,7216114,7216896,7217272	7207401,7207694,7208669,7209088,7209419,7209703,7210309,7210630,7211047,7211496,7211870,7212156,7212611,7213969,7214452,7214816,7215636,7216246,7216951,7218491	
chr9	7207010	7218491	7207350	7217365	+	Cre09.g412350.t2.1	Cre09.g412350.t2.1		7207010,7207593,7207998,7208977,7209349,7209631,7210146,7210526,7210949,7211314,7211696,7212028,7212478,7214261,7214683,7215444,7216114,7216896,7217272	7207401,7207694,7208669,7209088,7209419,7209703,7210309,7210630,7211047,7211496,7211870,7212156,7212611,7214452,7214816,7215636,7216246,7216951,7218491	
chr9	7218727	7221999	7218816	7220904	+	Cre09.g412400.t1.1	Cre09.g412400.t1.1		7218727,7219159,7219467,7220339,7220780	7219032,7219231,7219573,7220388,7221999	
chr9	7223136	7232179	7223437	7231536	-	RAD21	Cre09.g412450.t1.1		7231443,7231008,7230809,7230414,7230182,7229842,7229478,7227653,7227428,7226973,7226486,7224404,7223943,7223136	7232179,7231148,7230849,7230568,7230258,7229952,7229630,7229234,7227468,7227273,7226749,7226187,7224163,7223759	kleisin, RAD21 homolog; forms with SMC1, SMC3 and SCC3/SA/STAG the cohesin complex that holds siter chromatids together during S phase, allowing repair by homologous recombination
chr9	7238140	7242061	7238287	7241067	+	Cre09.g412500.t1.2	Cre09.g412500.t1.2		7238140,7238677,7238878,7239091,7239327,7239986,7240272,7240815,7241067	7238528,7238709,7238931,7239150,7239817,7240141,7240616,7240845,7242061	
chr9	7238140	7242111	7238287	7241120	+	Cre09.g412500.t2.1	Cre09.g412500.t2.1		7238140,7238677,7238878,7239091,7239327,7239986,7240272,7240815,7241120	7238528,7238709,7238931,7239150,7239817,7240141,7240616,7240845,7242111	
chr9	7242370	7249703	7242430	7249272	+	Cre09.g412550.t1.1	Cre09.g412550.t1.1		7242370,7243128,7243603,7243808,7244228,7244636,7244959,7245305,7245569,7245837,7246128,7246460,7246998,7247555,7247908,7248259,7248809	7242787,7243246,7243659,7243826,7244322,7244707,7245019,7245315,7245626,7245938,7246235,7246543,7247303,7247722,7248042,7248356,7249703	null-allele mutant was isolated (PMID 29743196)
chr9	7242370	7249703	7242591	7249272	+	Cre09.g412550.t2.1	Cre09.g412550.t2.1		7242370,7242738,7243128,7243603,7243808,7244228,7244636,7244959,7245305,7245569,7245837,7246128,7246460,7246998,7247555,7247908,7248259,7248809	7242625,7242787,7243246,7243659,7243826,7244322,7244707,7245019,7245315,7245626,7245938,7246235,7246543,7247303,7247722,7248042,7248356,7249703	null-allele mutant was isolated (PMID 29743196)
chr9	7250675	7268099	7252769	7267414	-	CYG52	Cre09.g412600.t1.1		7267678,7264981,7264754,7264197,7263910,7263495,7263228,7262738,7262394,7261941,7261481,7261090,7260935,7260670,7259312,7257160,7256705,7256265,7256089,7255588,7250675	7268099,7267514,7264815,7264401,7263945,7263566,7263305,7262929,7262523,7262069,7261608,7261181,7260977,7260774,7260382,7259022,7256973,7256366,7256154,7255897,7255226	Guanylate cyclase domain similar to that of NPR2 protein [Homo sapiens]
chr9	7268184	7273219	7269308	7273194	-	Cre09.g412650.t1.1	Cre09.g412650.t1.1		7268184	7273219	
chr9	7273274	7276229	7274117	7274578	-	Cre09.g412676.t1.1	Cre09.g412676.t1.1		7275447,7274542,7273274	7276229,7274599,7274279	
chr9	7276618	7279469	7277354	7279335	-	Cre09.g412700.t1.1	Cre09.g412700.t1.1		7279159,7278962,7278494,7276618	7279469,7279027,7278700,7278249	
chr9	7279600	7292578	7279855	7291595	+	Cre09.g412750.t1.2	Cre09.g412750.t1.2		7279600,7280127,7280647,7280930,7281447,7281869,7282419,7282748,7283009,7283534,7284145,7284428,7284917,7285284,7285615,7285985,7286499,7287029,7287629,7288205,7288650,7289349,7289631,7289746,7290517,7290861,7291460	7279909,7280189,7280773,7281015,7281539,7281988,7282498,7282823,7283158,7283983,7284235,7284654,7285081,7285424,7285767,7286290,7286808,7287311,7287878,7288342,7288757,7289355,7289649,7289844,7290682,7291133,7292578	May contain additional coding sequence in intronic N-island PMID: 27175017
chr9	7293470	7298421	7293500	7297461	+	Cre09.g412787.t1.1	Cre09.g412787.t1.1		7293470	7298421	
chr9	7298430	7304319	7298914	7304215	-	CGL88	Cre09.g412803.t1.2		7304019,7303792,7303369,7302991,7302411,7301959,7301455,7301074,7300567,7300158,7299590,7298430	7304319,7303874,7303531,7303061,7302516,7302086,7301578,7301240,7300643,7300217,7299665,7299043	
chr9	7304374	7311879	7305021	7311572	-	Cre09.g412850.t1.1	Cre09.g412850.t1.1		7311524,7310398,7309600,7309275,7308488,7307788,7307186,7306579,7306322,7305635,7304374	7311879,7311384,7309983,7309396,7308977,7308252,7307353,7306983,7306375,7305912,7305340	
chr9	7311980	7316721	7312157	7316688	+	HSP70F	Cre09.g412880.t1.1		7311980,7313019,7313448,7313683,7313979,7314433,7314856,7315722,7316335,7316577	7312741,7313082,7313557,7313872,7314164,7314541,7315417,7316166,7316373,7316721	HSP70F is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; it clusters together with HSP70D between chloroplast and mitochondrial HSP70s and contains an N-terminal extension, thus might be targeted to an organelle
chr9	7316724	7318699	7316748	7317010	-	Cre09.g412910.t1.1	Cre09.g412910.t1.1		7318691,7317616,7316724	7318699,7318405,7317347	
chr9	7316724	7319369	7316748	7317010	-	Cre09.g412910.t2.1	Cre09.g412910.t2.1		7319167,7317616,7316724	7319369,7318405,7317347	
chr9	7318824	7326829	7321273	7326322	-	Cre09.g412940.t1.1	Cre09.g412940.t1.1		7325211,7322889,7321515,7318824	7326829,7325075,7322819,7321404	
chr9	7327106	7331839	7327529	7331187	-	Cre09.g413000.t1.1	Cre09.g413000.t1.1		7329745,7329324,7329008,7328674,7328304,7327877,7327106	7331839,7329396,7329085,7328784,7328354,7327911,7327590	
chr9	7331940	7342521	7332133	7341363	+	Cre09.g413050.t1.1	Cre09.g413050.t1.1		7331940,7332896,7334188,7335046,7335554,7336188,7336562,7337289,7337751,7338234,7338605,7339122,7339774,7340121,7340549,7340796	7332752,7332972,7334553,7335349,7335714,7336286,7336660,7337526,7337895,7338339,7338670,7339244,7339826,7340193,7340614,7342521	Basic-leucine zipper (bZIP) transcription factor
chr9	7342570	7345121	7342593	7342882	+	Cre09.g413075.t1.1	Cre09.g413075.t1.1		7342570	7345121	
chr9	7347870	7354415	7348197	7353978	-	Cre09.g413100.t1.1	Cre09.g413100.t1.1		7353590,7353378,7353093,7352718,7348741,7348480,7347870	7354415,7353505,7353193,7352784,7348925,7348630,7348323	
chr9	7362836	7365170	7363560	7364911	+	Cre09.g413114.t1.2	Cre09.g413114.t1.2		7362836,7363460,7363970,7364401,7364911	7363361,7363855,7364302,7364796,7365170	
chr9	7362836	7365170	7363560	7364911	+	Cre09.g413114.t2.1	Cre09.g413114.t2.1		7362836,7363460,7363970,7364401,7364911	7363361,7363822,7364302,7364796,7365170	
chr9	7362836	7365170	7363560	7364911	+	Cre09.g413114.t3.1	Cre09.g413114.t3.1		7362836,7363460,7363970,7364401,7364911	7363361,7363822,7364110,7364796,7365170	
chr9	7365516	7368465	7365871	7367001	+	Cre09.g413123.t1.1	Cre09.g413123.t1.1		7365516,7366146,7366530,7366880	7366041,7366212,7366711,7368465	
chr9	7367391	7368445	7367615	7367793	-	Cre09.g413132.t1.1	Cre09.g413132.t1.1		7367391	7368445	
chr9	7372560	7375165	7373333	7374583	-	Cre09.g413141.t1.1	Cre09.g413141.t1.1		7373731,7373523,7372560	7375165,7373564,7373333	
chr9	7391376	7396630	7391731	7395567	+	Cre09.g413150.t1.1	Cre09.g413150.t1.1		7391376,7394874,7395252	7394717,7395010,7396630	
chr9	7397020	7407665	7398644	7407299	-	Cre09.g413200.t1.1	Cre09.g413200.t1.1		7407261,7407156,7406955,7406481,7406022,7405713,7404848,7404426,7404129,7398898,7397020	7407665,7407180,7407053,7406633,7406120,7405727,7405493,7404697,7404236,7403865,7398695	Serine/Threonine Protein Kinase Homolog 22, hypothetical; null-allele mutant was isolated (PMID 29743196)
chr9	7397020	7407665	7398644	7407299	-	Cre09.g413200.t2.1	Cre09.g413200.t2.1		7407261,7407156,7406955,7406481,7406022,7405713,7404848,7404426,7404129,7398898,7397020	7407665,7407180,7407053,7406633,7406120,7405727,7405493,7404697,7404233,7403865,7398695	Serine/Threonine Protein Kinase Homolog 22, hypothetical; null-allele mutant was isolated (PMID 29743196)
chr9	7408986	7413847	7409135	7412899	+	Cre09.g413250.t1.2	Cre09.g413250.t1.2		7408986,7409377,7409591,7409862,7410288,7410476,7410631,7410796,7411126,7411357,7411689,7412147,7412592	7409287,7409467,7409617,7409894,7410344,7410495,7410705,7410901,7411183,7411535,7411799,7412208,7413847	
chr9	7413890	7416425	7414925	7415809	-	Cre09.g413300.t1.2	Cre09.g413300.t1.2		7416079,7415774,7415387,7413890	7416425,7415838,7415461,7415103	
chr9	7416566	7421217	7416778	7419833	+	Cre09.g413350.t1.1	Cre09.g413350.t1.1		7416566,7417236,7417513,7417824,7418519,7419031	7416997,7417353,7417615,7418067,7418916,7421217	null-allele mutant was isolated (PMID 29743196)
chr9	7421220	7432095	7422452	7431726	-	Cre09.g413400.t1.1	Cre09.g413400.t1.1		7431537,7431010,7430532,7430159,7429564,7429255,7428951,7428665,7428371,7427833,7427329,7427032,7426554,7426288,7426021,7425746,7425268,7424819,7424365,7424063,7423730,7423226,7423044,7421220	7432095,7431093,7430720,7430302,7429767,7429420,7429064,7428757,7428444,7427982,7427442,7427184,7426638,7426409,7426072,7425855,7425546,7425155,7424585,7424183,7423856,7423580,7423103,7422863	
chr9	7432196	7433087	7432275	7432531	+	Cre09.g413425.t1.1	Cre09.g413425.t1.1		7432196	7433087	
chr9	7433466	7438021	7433730	7436693	+	Cre09.g413450.t1.1	Cre09.g413450.t1.1		7433466,7434637,7434870,7435215,7435416,7435617,7435818,7436019,7436274,7436475	7434525,7434738,7435083,7435280,7435481,7435682,7435883,7436084,7436339,7438021	
chr9	7440316	7443077	7440789	7442743	+	Cre09.g413475.t1.1	Cre09.g413475.t1.1		7440316,7441718,7442357,7442636	7440820,7441812,7442399,7443077	
chr9	7443166	7446519	7443605	7445629	+	Cre09.g413500.t1.1	Cre09.g413500.t1.1		7443166,7443726,7444072,7444289,7444464,7444646,7444900,7445474	7443647,7443939,7444217,7444413,7444535,7444754,7444981,7446519	
chr9	7446796	7450167	7446886	7447274	+	Cre09.g413533.t1.1	Cre09.g413533.t1.1		7446796,7447066	7446921,7450167	
chr9	7450536	7454997	7450811	7454197	+	Cre09.g413566.t1.1	Cre09.g413566.t1.1		7450536,7451213,7451751,7452503	7451105,7451659,7452348,7454997	
chr9	7457656	7461247	7457853	7460842	+	Cre09.g413600.t1.1	Cre09.g413600.t1.1		7457656,7458023,7458604,7459230,7459721,7460081,7460426,7460751	7457924,7458072,7459039,7459449,7459876,7460214,7460569,7461247	
chr9	7461330	7470005	7462696	7469804	-	Cre09.g413650.t1.1	Cre09.g413650.t1.1		7468628,7468273,7467744,7467536,7467242,7466924,7466731,7466427,7465887,7465465,7465005,7464320,7463929,7463646,7463288,7463076,7462845,7461330	7470005,7468467,7468118,7467619,7467364,7467094,7466768,7466553,7466082,7465754,7465346,7464804,7464115,7463775,7463509,7463152,7462936,7462703	
chr9	7472736	7475677	7472971	7475538	+	Cre09.g413700.t1.1	Cre09.g413700.t1.1		7472736,7473071,7473399,7473577,7473843,7474151,7474359,7474702,7475267	7472974,7473264,7473481,7473656,7473956,7474257,7474455,7474796,7475677	
chr9	7475726	7479339	7476018	7479031	+	Cre09.g413750.t1.1	Cre09.g413750.t1.1		7475726,7476193,7476353,7476606,7476961,7477146,7477367,7477570,7477897,7478277,7478531,7478869	7476126,7476268,7476468,7476749,7477026,7477208,7477456,7477734,7478115,7478394,7478679,7479339	similar to 4-aminobutyrate aminotransferase
chr9	7479386	7486027	7479599	7485314	+	Cre09.g413800.t1.1	Cre09.g413800.t1.1		7479386,7479878,7480132,7480330,7480680,7480893,7481127,7481391,7481645,7481959,7482288,7482450,7482798,7483060,7483249,7483556,7483911,7484236,7484477,7484663,7485062	7479686,7479981,7480214,7480396,7480759,7480967,7481177,7481509,7481728,7482066,7482300,7482542,7482890,7483138,7483380,7483683,7484011,7484335,7484527,7484793,7486027	
chr9	7486041	7491635	7486312	7491438	-	Cre09.g413850.t1.2	Cre09.g413850.t1.2		7491360,7491170,7490857,7490545,7490132,7488799,7488343,7488138,7487668,7487302,7487105,7486041	7491635,7491289,7490922,7490584,7490276,7488899,7488552,7488196,7487763,7487444,7487200,7486445	
chr9	7493183	7497407	7493413	7496902	+	Cre09.g413900.t1.2	Cre09.g413900.t1.2		7493183,7493560,7493834,7494013,7494220,7494514,7494719,7495006,7495309,7495538,7495789,7496106,7496334,7496716	7493494,7493619,7493924,7494073,7494276,7494555,7494752,7495144,7495455,7495609,7495855,7496171,7496514,7497407	
chr9	7497410	7508575	7497621	7508148	-	EFH6	Cre09.g413950.t1.1		7508050,7507219,7507038,7506824,7506574,7506371,7506195,7505956,7505699,7505415,7505244,7504969,7504769,7504516,7504184,7503786,7502940,7502586,7502419,7502118,7501931,7501245,7500461,7499385,7497410	7508575,7507906,7507106,7506925,7506720,7506478,7506251,7506062,7505825,7505471,7505294,7505088,7504856,7504646,7504288,7504058,7503683,7502857,7502516,7502320,7501993,7501769,7501143,7500341,7499248	
chr9	7510562	7514585	7511344	7514176	-	HPT1	Cre09.g414000.t1.2		7514116,7513800,7513326,7513059,7512694,7512344,7512223,7511885,7511646,7510562	7514585,7513907,7513422,7513152,7512733,7512595,7512258,7511993,7511712,7511450	UbiA prenyltransferase family protein involved in vitamin E biosynthesis
chr9	7515066	7519418	7515260	7519120	+	Cre09.g414050.t1.2	Cre09.g414050.t1.2		7515066,7516477,7516723,7517057,7517301,7517781,7518017,7518303,7518495,7518937	7515530,7516567,7516799,7517125,7517468,7517858,7518106,7518368,7518770,7519418	ChromoDB RUVBL341
chr9	7521036	7523919	7521285	7523682	+	Cre09.g414100.t1.2	Cre09.g414100.t1.2		7521036,7521448,7521661,7521908,7522243,7522553,7522842,7523038,7523406	7521361,7521560,7521769,7522110,7522448,7522748,7522929,7523102,7523919	
chr9	7524036	7529629	7524405	7528558	+	Cre09.g414150.t1.1	Cre09.g414150.t1.1		7524036,7524671,7524853,7524982,7525157,7525344,7525650,7525853,7526109,7526310,7527500,7528010,7528372	7524456,7524780,7524891,7525050,7525278,7525413,7525673,7525931,7526188,7526371,7527695,7528184,7529629	
chr9	7524176	7529629	7524405	7528558	+	Cre09.g414150.t3.1	Cre09.g414150.t3.1		7524176,7524671,7524853,7524982,7525157,7525344,7525650,7525853,7526109,7526310,7527500,7528010,7528372	7524456,7524780,7524891,7525050,7525278,7525413,7525673,7525931,7526188,7526371,7527695,7528184,7529629	
chr9	7524036	7530100	7524405	7528558	+	Cre09.g414150.t2.1	Cre09.g414150.t2.1		7524036,7524671,7524853,7524982,7525157,7525344,7525650,7525853,7526109,7526310,7527500,7528010,7528372	7524456,7524780,7524891,7525050,7525278,7525413,7525673,7525931,7526188,7526371,7527695,7528184,7530100	
chr9	7530923	7533987	7531362	7533823	-	VPS26	Cre09.g414200.t1.2		7533820,7533588,7533392,7532968,7532655,7532380,7531994,7531758,7530923	7533987,7533749,7533509,7533079,7532769,7532448,7532124,7531862,7531510	Expressed Protein. Similar to VPS26, a component of Retromer Coat complex involved in endosomal to Golgi trafficking.
chr9	7534122	7537689	7534244	7537443	+	ALG8	Cre09.g414250.t1.1		7534122,7534532,7535060,7535332,7535716,7536238,7536612,7536957	7534402,7534685,7535118,7535582,7536017,7536462,7536836,7537689	adds glucose to Man 8 on N-glycans
chr9	7537693	7545427	7538148	7544784	-	Cre09.g414300.t1.2	Cre09.g414300.t1.2		7544948,7544781,7544627,7544448,7544207,7543994,7543726,7543489,7543265,7542863,7542597,7542325,7542165,7541930,7541191,7540984,7540589,7540428,7540168,7539895,7539694,7539342,7539064,7538874,7538546,7537693	7545427,7544805,7544706,7544477,7544266,7544048,7543756,7543592,7543322,7542913,7542689,7542383,7542209,7542056,7541218,7541048,7540681,7540496,7540220,7539995,7539800,7539442,7539144,7538937,7538703,7538403	
chr9	7545898	7552634	7546296	7551925	+	Cre09.g414350.t1.1	Cre09.g414350.t1.1		7545898,7546480,7546776,7547095,7547383,7547714,7548032,7548342,7548492,7548685,7548959,7549524,7549783,7550080,7551044,7551256,7551478	7546341,7546644,7546910,7547217,7547539,7547847,7548157,7548394,7548567,7548798,7549349,7549658,7549967,7550944,7551132,7551348,7552634	
chr9	7570418	7575509	7570833	7573979	+	CYCD4	Cre09.g414416.t1.1		7570418,7570831,7572059,7572418,7572640,7572836,7573178	7570695,7571096,7572293,7572489,7572711,7573051,7575509	D type cyclin. Contains LXCXE motif that binds to retinoblastoma related proteins.
chr9	7577408	7578027	7577548	7577744	-	Cre09.g414482.t1.1	Cre09.g414482.t1.1		7577408	7578027	
chr9	7578718	7582536	7579400	7582186	+	CSR7	Cre09.g414550.t1.2		7578718,7579626,7579847,7580169,7580406,7581134,7581437,7581692,7581883,7582114	7579511,7579694,7580056,7580258,7581036,7581201,7581574,7581737,7581962,7582536	
chr9	7582588	7588599	7582651	7587578	+	Cre09.g414600.t1.1	Cre09.g414600.t1.1		7582588,7582792,7584633,7585137,7585457,7585785,7586161,7586377,7586544,7586870,7587239	7582705,7584382,7585033,7585322,7585663,7585907,7586229,7586421,7586686,7586951,7588599	
chr9	7588648	7591441	7588935	7590881	+	Cre09.g414626.t1.1	Cre09.g414626.t1.1		7588648,7589288,7590538,7590881	7588997,7590267,7590666,7591441	
chr9	7592071	7601737	7593726	7601545	-	Cre09.g414650.t1.1	Cre09.g414650.t1.1		7601539,7601316,7600917,7600782,7600575,7600234,7599935,7599447,7599056,7596594,7595092,7592071	7601737,7601438,7601017,7600824,7600673,7600322,7600126,7599648,7599142,7598841,7596452,7594971	
chr9	7603838	7604739	7603937	7604271	+	Cre09.g414700.t1.2	Cre09.g414700.t1.2		7603838	7604739	
chr9	7604838	7611389	7605217	7611270	+	ELG33	Cre09.g414750.t1.1		7604838,7605421,7605612,7606413,7606705,7607109,7607421,7607673,7607848,7608207,7608852,7609171,7609303,7609608,7609773,7609908,7610072,7610612,7610852,7611056	7605265,7605513,7605719,7606576,7606745,7607320,7607548,7607747,7608060,7608351,7609006,7609197,7609411,7609686,7609796,7609957,7610198,7610709,7610976,7611389	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr9	7611438	7615809	7611575	7615413	+	Cre09.g414800.t1.2	Cre09.g414800.t1.2		7611438,7611877,7612149,7612482,7613016,7613329,7613559,7613790,7614047,7614637,7614989,7615236	7611745,7611966,7612292,7612762,7613165,7613415,7613631,7613871,7614403,7614768,7615081,7615809	
chr9	7611438	7615959	7611575	7615413	+	Cre09.g414800.t2.1	Cre09.g414800.t2.1		7611438,7611877,7612149,7612482,7613016,7613329,7613559,7613790,7614047,7614637,7614989,7615236	7611745,7611966,7612292,7612762,7613165,7613415,7613631,7613871,7614403,7614768,7615081,7615959	
chr9	7616008	7621214	7616079	7620295	+	Cre09.g414850.t2.1	Cre09.g414850.t2.1		7616008,7616227,7616566,7616807,7617221,7617578,7618056,7620148	7616121,7616466,7616706,7617013,7617477,7617784,7618260,7621214	
chr9	7615858	7621214	7615952	7620295	+	Cre09.g414850.t1.1	Cre09.g414850.t1.1		7615858,7616109,7616227,7616566,7616807,7617221,7617578,7618056,7620148	7615957,7616130,7616466,7616706,7617013,7617477,7617784,7618260,7621214	
chr9	7622768	7631007	7623457	7630950	-	ELG41	Cre09.g414900.t1.1		7630893,7630711,7630395,7630099,7629852,7629684,7629421,7628831,7628426,7628165,7627550,7627084,7626895,7626718,7626386,7626130,7625937,7625523,7625355,7625014,7624801,7624519,7624147,7623970,7622768	7631007,7630813,7630423,7630216,7629943,7629753,7629563,7628934,7628498,7628335,7627647,7627142,7626946,7626780,7626432,7626202,7626010,7625698,7625378,7625150,7624861,7624635,7624245,7624037,7623824	putative terminal arabinosyl transferase on HRGP,  GT47 family; null-allele mutant was isolated (PMID 29743196)
chr9	7631108	7634219	7631905	7633609	+	Cre09.g414951.t1.1	Cre09.g414951.t1.1		7631108,7632267,7633083,7633345	7632024,7632275,7633164,7634219	
chr9	7634222	7635827	7634995	7635760	-	Cre09.g415001.t1.1	Cre09.g415001.t1.1		7635531,7634222	7635827,7635426	
chr9	7635928	7637029	7636356	7637002	+	Cre09.g415050.t3.1	Cre09.g415050.t3.1		7635928,7636526,7636790	7636404,7636655,7637029	
chr9	7635888	7637368	7636642	7637343	+	Cre09.g415050.t1.2	Cre09.g415050.t1.2		7635888,7636526,7636790,7637315	7636404,7636655,7636997,7637368	
chr9	7635888	7637029	7636642	7637002	+	Cre09.g415050.t2.1	Cre09.g415050.t2.1		7635888,7636526,7636790	7636404,7636655,7637029	
chr9	7637032	7638976	7637244	7638828	-	ELG25	Cre09.g415100.t1.1		7638771,7638589,7638225,7637977,7637730,7637562,7637032	7638976,7638691,7638301,7638097,7637821,7637631,7637441	belongs to the family of exostosin-like glycosyltransferases
chr9	7639068	7643089	7639783	7641543	+	Cre09.g415150.t1.2	Cre09.g415150.t1.2		7639068,7639760,7641017,7641279	7639611,7639902,7641098,7643089	
chr9	7643092	7649257	7643474	7649104	-	NOM1	Cre09.g415200.t1.1		7648768,7648397,7648251,7647051,7646613,7646280,7645955,7645662,7645218,7644844,7644437,7644193,7643870,7643092	7649257,7648672,7648286,7648030,7646718,7646437,7646102,7645752,7645511,7645082,7644691,7644279,7644001,7643660	
chr9	7649309	7650377	7649595	7650241	-	Cre09.g415240.t1.2	Cre09.g415240.t1.2		7649309	7650377	
chr9	7650478	7652563	7650956	7652306	+	Cre09.g415250.t1.2	Cre09.g415250.t1.2		7650478,7651126,7651390,7651699,7652042	7651004,7651255,7651597,7651792,7652563	
chr9	7652592	7655537	7653190	7655250	-	Cre09.g415300.t1.1	Cre09.g415300.t1.1		7655203,7655083,7654907,7654736,7654592,7654389,7654002,7653799,7652592	7655537,7655112,7654978,7654799,7654640,7654492,7654279,7653881,7653573	
chr9	7658088	7659499	7658124	7658821	+	Cre09.g415350.t1.2	Cre09.g415350.t1.2		7658088	7659499	
chr9	7659678	7672189	7660159	7671787	+	Cre09.g415400.t1.1	Cre09.g415400.t1.1		7659678,7660141,7660784,7661150,7661482,7661944,7662172,7662453,7662745,7663155,7663447,7663780,7664087,7664469,7664674,7664901,7665188,7666111,7666332,7666639,7667165,7667439,7667881,7668229,7668982,7669675,7670406,7670991	7660016,7660696,7661009,7661346,7661636,7662052,7662293,7662672,7663044,7663245,7663648,7663984,7664362,7664548,7664770,7664997,7665987,7666211,7666501,7667054,7667335,7667783,7668075,7668879,7669164,7670235,7670893,7672189	
chr9	7673038	7680269	7673254	7679897	+	KIN17-1	Cre09.g415450.t1.2		7673038,7673419,7674166,7674352,7674575,7674892,7675146,7675357,7675663,7675938,7676185,7676436,7676805,7677105,7677269,7677517,7677748,7678099,7678324,7678597,7678830,7679090,7679459,7679756	7673353,7673541,7674215,7674442,7674649,7674968,7675188,7675503,7675780,7675996,7676299,7676619,7676952,7677164,7677331,7677619,7677914,7678185,7678481,7678669,7678982,7679120,7679571,7680269	kinesin-17 family, a novel family (PMID: 16481395); appears as molecular marker KIN3 in the map-based cloning kit developed by Rymarquis et al. [PMID: 15665247]; peptides shared with FLA8  FLA10 and other kinesins
chr9	7680272	7684767	7680426	7684565	-	TCA1	Cre09.g415500.t1.1		7682993,7682688,7682272,7681696,7681443,7681154,7680720,7680272	7684767,7682840,7682597,7682107,7681565,7681339,7681070,7680615	Required for translation of the chloroplast petA RNA (see PMID: 11560891 & PMID: 17494733)
chr9	7684878	7688704	7685030	7688493	+	ASA2	Cre09.g415550.t1.2		7684878,7685325,7685501,7685768,7686112,7686385,7686679,7686927,7687208,7687481,7687826,7688110,7688465	7685073,7685352,7685615,7685823,7686277,7686537,7686822,7687043,7687327,7687686,7687973,7688270,7688704	Mitochondrial F1 ATP synthase associated 45.5 kDa protein; specific to Chlorophyceae; part of peripheral stalk involed in dimerization; a degenerated OctotricoPeptide (octatricopeptide) Repeat (OPR) protein
chr9	7688722	7693657	7690783	7693567	-	Cre09.g415600.t1.1	Cre09.g415600.t1.1		7693392,7693125,7692690,7692435,7692157,7691883,7691417,7691044,7688722	7693657,7693303,7692862,7692548,7692237,7691970,7691585,7691314,7690865	
chr9	7689542	7693657	7690783	7693567	-	Cre09.g415600.t2.1	Cre09.g415600.t2.1		7693392,7693125,7692690,7692435,7692157,7691883,7691417,7691044,7689542	7693657,7693303,7692862,7692548,7692237,7691970,7691585,7691314,7690865	
chr9	7696582	7700717	7697667	7700582	-	FAP351	Cre09.g415650.t2.1		7700498,7700349,7699998,7699720,7699278,7698835,7698463,7698221,7698031,7696582	7700717,7700425,7700162,7699903,7699577,7699165,7698711,7698332,7698149,7697888	with Sperm-tail PG-rich repeat
chr9	7696532	7701967	7697667	7700582	-	FAP351	Cre09.g415650.t1.2		7701702,7700498,7700349,7699998,7699720,7699278,7698835,7698463,7698221,7698031,7696532	7701967,7700637,7700425,7700162,7699903,7699577,7699165,7698711,7698332,7698149,7697888	with Sperm-tail PG-rich repeat
chr9	7702059	7704127	7702142	7703740	+	CAH3	Cre09.g415700.t1.2		7702059,7702255,7702510,7702808,7703244,7703538	7702193,7702435,7702691,7702955,7703412,7704127	Carbonic anhydrase, carbonate dehydratase (EC 4.2.1.1) precursor, alpha type; located in thylakoid lumen (TAT pathway); identical to CRU73856; PSII associated, involved in photosynthesis and CO2 concentration; [PMID: 9482718]
chr9	7707645	7711169	7707812	7710804	+	MFT8	Cre09.g415750.t1.2		7707645,7707989,7708252,7708976,7709408,7709757	7707862,7708076,7708857,7709063,7709559,7711169	related to bacterial putative permeases
chr9	7711175	7716297	7711639	7716202	-	Cre09.g415800.t1.2	Cre09.g415800.t1.2		7716096,7715796,7715542,7715114,7714780,7714542,7714139,7713438,7713086,7712295,7711946,7711175	7716297,7715867,7715616,7715421,7714944,7714641,7714346,7713981,7713241,7712550,7712151,7711726	
chr9	7716413	7718809	7716512	7718531	+	CAG3	Cre09.g415850.t1.2		7716413,7716768,7717422,7717770,7717956,7718167,7718385	7716693,7716992,7717547,7717852,7718024,7718275,7718809	NADH:ubiquinone oxidoreductase (Complex I) subunit related to gamma carbonic anhydrase; identical to AY463241 (GCLP1) and identical to AY538681(mitochondrial complex I subunit).
chr9	7718812	7722067	7718837	7721974	-	MOT20	Cre09.g415900.t1.2		7721933,7721686,7721302,7721077,7720807,7720487,7720122,7719922,7719087,7718812	7722067,7721736,7721442,7721173,7720924,7720581,7720290,7719995,7719124,7719012	identified by comparative genomics as being present only in organisms having motile (MOT) cilia
chr9	7723956	7725961	7724558	7725904	-	PRPL6	Cre09.g415950.t1.2		7725748,7725611,7725441,7725302,7725040,7723956	7725961,7725664,7725511,7725362,7725144,7724735	imported to chloroplast; Chloroplast large ribosomal subunit protein L6
chr9	7726054	7731243	7726101	7730155	+	Cre09.g416000.t1.2	Cre09.g416000.t1.2		7726054,7726315,7726785,7726985,7727189,7727573,7727895,7728368,7728703,7728972,7729367,7729628,7729990	7726166,7726720,7726869,7727046,7727382,7727783,7728206,7728527,7728827,7729254,7729433,7729769,7731243	U4/U6-associated splicing factor in the snRNP family; identified in the eyespot phosphoproteome by Wagner et al. 28 [PMID: 1865559], predicted protein with similarity to an Ostreococcus protein
chr9	7731381	7735817	7731482	7735498	+	AGS1	Cre09.g416050.t1.2		7731381,7731669,7732050,7732244,7732599,7732984,7733319,7733795,7734191,7734695,7735055,7735378	7731489,7731806,7732135,7732356,7732757,7733098,7733450,7733909,7734299,7734849,7735131,7735817	argininosuccinate synthase (EC 6.3.4.5); similar to prokaryotic argininosuccinate synthases, such as that from Magnetococcus (GenBank EAN29055); Target-P predicts organelle (weakly mitochondrial) targeting. This corresponds to the C. reinhardtii ARG8 locus: Loppes, R., and Heindricks, R. (1986) Arch. Microbiol. 143, 348-352.
chr9	7735844	7739561	7736273	7739407	-	DNJ11	Cre09.g416100.t1.2		7739401,7739137,7738822,7738459,7738221,7737728,7737543,7737216,7736899,7736509,7735844	7739561,7739325,7738938,7738602,7738333,7737736,7737594,7737396,7737056,7736601,7736357	DnaJ-like protein; probably cytosolic; similar to rice Q8SV9, Xenopus Q7ZXQ8, and Arabidopsis Q9M2L3; contain J-domain (pfam226) in the middle of the protein
chr9	7741724	7744121	7741747	7743277	+	ASA7	Cre09.g416150.t1.2		7741724,7741967,7742298,7742708,7743179	7741860,7742143,7742394,7742846,7744121	Mitochondrial ATP synthase associated protein 7; part of peripheral stalk involed in dimerization; unknown evolutionary origin; previously identified as NUOP6, a component of complex I, but now known to belong to complex V [PMID: 15450959, PMID: 15710684, PMID: 11744727]
chr9	7744642	7749093	7744833	7748289	+	MBB1	Cre09.g416200.t1.2		7744642,7745274,7745448,7745692,7746095,7746387,7746595,7746875,7747172,7747562,7748073	7745193,7745365,7745569,7745882,7746256,7746475,7746709,7746946,7747384,7747918,7749093	TetratrichoPeptide Repeat (TPR) protein; binds psbB and psbH 5'-UTR, stabilizing them against exonucleolytic attack
chr9	7750652	7760153	7750740	7759657	+	MYO2	Cre09.g416250.t1.1		7750652,7751285,7751659,7751985,7752255,7752566,7752807,7753163,7753553,7753824,7754071,7754330,7754812,7755064,7755319,7755590,7755845,7756111,7756430,7756719,7757170,7757910,7759011,7759367	7750991,7751391,7751784,7752067,7752416,7752682,7752986,7753288,7753652,7753942,7754193,7754546,7754912,7755206,7755472,7755696,7755950,7756311,7756580,7757029,7757316,7758828,7759157,7760153	Similar to V. carteri myoB; null-allele mutant was isolated (PMID 29743196)
chr9	7760863	7767502	7760979	7766678	+	Cre09.g416300.t1.1	Cre09.g416300.t1.1		7760863,7761223,7761524,7761998,7762253,7762436,7762649,7762808,7762975,7763216,7763456,7763629,7763815,7764032,7764209,7764516,7764746,7765009,7765218,7765478,7765708,7765942,7766293	7761079,7761345,7761648,7762072,7762287,7762492,7762688,7762881,7763046,7763276,7763466,7763696,7763903,7764104,7764240,7764602,7764790,7765091,7765338,7765645,7765833,7766033,7767502	
chr9	7767506	7770631	7768031	7770012	-	Cre09.g416309.t1.1	Cre09.g416309.t1.1		7769939,7769393,7769119,7768932,7768605,7768281,7767506	7770631,7769715,7769248,7769011,7768664,7768438,7768137	
chr9	7797822	7802173	7797853	7800565	+	Cre09.g416350.t1.2	Cre09.g416350.t1.2		7797822,7798060,7798363,7798684,7798930,7799258,7799465,7799689,7800059,7800450	7797886,7798237,7798443,7798799,7799013,7799342,7799535,7799814,7800174,7802173	ChromoDB NFA341
chr9	7802276	7809008	7803156	7808921	-	Cre09.g416400.t1.1	Cre09.g416400.t1.1		7808717,7808520,7808240,7807274,7806880,7806601,7806218,7805829,7805464,7805193,7804750,7804517,7804255,7803918,7803411,7802276	7809008,7808632,7808396,7807929,7807135,7806792,7806440,7805994,7805575,7805333,7804915,7804589,7804333,7804132,7803545,7803274	
chr9	7809711	7813141	7810337	7813018	-	Cre09.g416450.t1.2	Cre09.g416450.t1.2		7812758,7812615,7812407,7812288,7812038,7811669,7811130,7810935,7810774,7809711	7813141,7812666,7812534,7812346,7812222,7811921,7811273,7811000,7810839,7810678	
chr9	7813949	7815694	7814590	7815429	-	CGL151	Cre09.g416500.t1.2		7815378,7815221,7814973,7813949	7815694,7815300,7815024,7814713	
chr9	7817056	7823941	7818302	7823731	-	MBO2	Cre09.g416550.t1.2		7823572,7823419,7822999,7822623,7822334,7822085,7821209,7820873,7820581,7820141,7819846,7819397,7818991,7818685,7817056	7823941,7823469,7823318,7822770,7822465,7822195,7821609,7821059,7820750,7820292,7819963,7819631,7819209,7818803,7818543	Coiled-coil flagellar protein; mbo2 (move backward only) mutants are defective in the production of the ciliary waveform; Coiled-Coil Flagellar Protein
chr9	7824356	7826851	7825283	7826825	-	Cre09.g416583.t1.1	Cre09.g416583.t1.1		7826720,7826329,7826049,7825801,7824356	7826851,7826598,7826246,7825923,7825550	
chr9	7826976	7828251	7827568	7828187	-	Cre09.g416616.t1.1	Cre09.g416616.t1.1		7826976	7828251	
chr9	7829946	7833701	7830554	7833620	-	Cre09.g416650.t1.2	Cre09.g416650.t1.2		7833493,7833364,7833143,7832858,7832688,7832584,7832457,7832210,7831948,7831835,7831747,7831571,7831383,7829946	7833701,7833425,7833264,7832900,7832799,7832598,7832525,7832357,7832074,7831878,7831765,7831658,7831456,7830629	
chr9	7838445	7840968	7838731	7840312	+	Cre09.g416700.t1.1	Cre09.g416700.t1.1		7838445,7838858,7839173,7839409,7839672,7839976,7840273	7838790,7838928,7839317,7839472,7839779,7840044,7840968	
chr9	7844892	7849853	7845054	7849029	+	CCT2	Cre09.g416750.t1.2		7844892,7845156,7845305,7845553,7845781,7846186,7846815,7847046,7847409,7847660,7847983,7848376,7848690,7848945	7845054,7845221,7845370,7845664,7845909,7846322,7846865,7847261,7847541,7847827,7848180,7848485,7848800,7849853	T-complex protein 1, beta subunit (TCP-1-beta) (CCT-beta) (TCPB); subunit of cytosolic chaperonin complex
chr9	7849856	7852452	7850609	7852363	-	Cre09.g416800.t1.2	Cre09.g416800.t1.2		7852232,7852048,7851828,7851339,7851143,7850874,7849856	7852452,7852133,7851967,7851416,7851202,7850939,7850690	
chr9	7852572	7861973	7852821	7860494	+	Cre09.g416850.t1.2	Cre09.g416850.t1.2		7852572,7853698,7853914,7854310,7855082,7855411,7855654,7856029,7856416,7856677,7857048,7857461,7857813,7858362,7858499	7853562,7853778,7854132,7854939,7855274,7855538,7855769,7856274,7856555,7856794,7857171,7857600,7857989,7858386,7861973	
chr9	7862360	7865511	7863290	7865076	-	Cre09.g416900.t1.1	Cre09.g416900.t1.1		7865036,7864650,7864395,7864057,7863606,7863405,7862360	7865511,7864792,7864542,7864293,7863897,7863500,7863290	
chr9	7868122	7871618	7868341	7870809	+	MKP1	Cre09.g416950.t1.1		7868122,7868740,7869167,7869517,7869772,7870125,7870325,7870724	7868666,7869065,7869380,7869674,7870035,7870230,7870508,7871618	Map Kinase Phosphatase 1 (Dual Specificity Protein Phosphatase)(DSP1); dephosphorylates and inactivates MAP kinases
chr9	7877132	7881431	7877769	7881037	-	Cre09.g417000.t1.2	Cre09.g417000.t1.2		7880780,7880615,7880187,7879680,7879480,7879031,7878373,7878072,7877132	7881431,7880696,7880406,7879747,7879581,7879191,7878399,7878142,7877960	
chr9	7890666	7891827	7891060	7891562	+	Cre09.g417013.t1.1	Cre09.g417013.t1.1		7890666,7891316	7891147,7891827	
chr9	7891976	7893507	7892339	7892868	+	Cre09.g417025.t1.1	Cre09.g417025.t1.1		7891976,7892174	7892094,7893507	
chr9	7894106	7895034	7894355	7894614	+	Cre09.g417037.t1.1	Cre09.g417037.t1.1		7894106	7895034	
chr9	7895297	7901225	7895925	7901031	-	Cre09.g417050.t2.1	Cre09.g417050.t2.1		7900958,7900678,7900418,7900220,7900073,7899812,7899656,7899331,7899130,7898900,7898733,7898516,7898307,7898037,7897784,7897627,7897367,7897067,7896793,7896605,7896427,7895297	7901225,7900800,7900542,7900294,7900107,7899868,7899695,7899404,7899201,7898960,7898743,7898602,7898376,7898141,7897867,7897671,7897449,7897181,7896960,7896730,7896524,7896310	
chr9	7895189	7901225	7895925	7901031	-	Cre09.g417050.t1.1	Cre09.g417050.t1.1		7900958,7900678,7900418,7900220,7900073,7899812,7899656,7899331,7899130,7898900,7898733,7898516,7898307,7898037,7897784,7897627,7897367,7897067,7896793,7896605,7896427,7895189	7901225,7900800,7900542,7900294,7900107,7899868,7899695,7899404,7899201,7898960,7898743,7898602,7898376,7898141,7897867,7897671,7897449,7897181,7896960,7896730,7896524,7896310	
chr9	7901470	7904405	7903012	7904289	-	Cre09.g417076.t1.1	Cre09.g417076.t1.1		7904228,7901470	7904405,7903320	
chr9	7904536	7906109	7904667	7905289	+	Cre09.g417100.t1.1	Cre09.g417100.t1.1		7904536	7906109	
chr9	7906771	7911464	7906995	7911097	+	CAT1	Cre09.g417150.t1.2		7906771,7907310,7907535,7907722,7907929,7908236,7908579,7909294,7909530,7909855,7910226,7910503,7910737,7911001	7907010,7907423,7907633,7907781,7908063,7908367,7908807,7909351,7909681,7909916,7910356,7910608,7910829,7911464	mono-functional, haem-containing catalase (EC:1.11.1.6) involved in detoxification of H2O2; located in the mitochondrion, according to proteomic survey, but lacks a targeting peptide; has been found to be reduced and inhibited by thioredoxin (PMID: 15123830); null-allele mutant was isolated (PMID 29743196)
chr9	7911470	7912045	7911561	7911739	-	Cre09.g417176.t1.1	Cre09.g417176.t1.1		7911470	7912045	
chr9	7912780	7916315	7913498	7916129	-	Cre09.g417200.t1.2	Cre09.g417200.t1.2		7916042,7915679,7915347,7915139,7914788,7914594,7914066,7912780	7916315,7915744,7915422,7915239,7914941,7914685,7914324,7913926	
chr9	7916474	7929250	7916708	7928257	+	ELG27	Cre09.g417250.t1.1		7916474,7916870,7917077,7917232,7917463,7917758,7917943,7920235,7920465,7920689,7921140,7921336,7921502,7921748,7922117,7922277,7924515,7924702,7925075,7925503,7925686,7925848,7926143,7927177,7927380,7927610,7927721,7927923	7916771,7916975,7917111,7917279,7917583,7917852,7918012,7920377,7920568,7920761,7921245,7921403,7921599,7921858,7922176,7922326,7924555,7924825,7925183,7925569,7925709,7925984,7926203,7927234,7927495,7927651,7927788,7929250	putative terminal arabinosyl transferase on HRGP,  GT47 family
chr9	7936256	7940317	7936601	7939522	+	Cre09.g417350.t1.1	Cre09.g417350.t1.1		7936256,7937053,7938169,7938414,7938541,7939336	7936891,7937190,7938297,7938472,7938590,7940317	
chr9	7940555	7947595	7941127	7947544	-	Cre09.g417400.t1.1	Cre09.g417400.t1.1		7947145,7946885,7946805,7944317,7943968,7943535,7943118,7941452,7940555	7947595,7946999,7946815,7946711,7944185,7943811,7943479,7943061,7941127	
chr9	7940555	7947595	7942206	7947544	-	Cre09.g417400.t2.1	Cre09.g417400.t2.1		7947145,7946885,7946805,7944317,7943968,7943535,7943118,7940555	7947595,7946999,7946815,7946711,7944185,7943811,7943479,7943061	
chr9	7947660	7952245	7947711	7951819	-	Cre09.g417401.t1.2	Cre09.g417401.t1.2		7952189,7951771,7951446,7951297,7951077,7949843,7949223,7947660	7952245,7951943,7951713,7951359,7951217,7950927,7949573,7949124	
chr9	7947660	7952245	7947711	7951819	-	Cre09.g417401.t2.1	Cre09.g417401.t2.1		7952201,7951771,7951446,7951297,7951077,7949843,7949223,7947660	7952245,7951943,7951710,7951359,7951217,7950927,7949573,7949124	
chr9	7947660	7952245	7947711	7951819	-	Cre09.g417401.t3.1	Cre09.g417401.t3.1		7952189,7951771,7951446,7951297,7951077,7949843,7949223,7947660	7952245,7951943,7951710,7951359,7951217,7950927,7949573,7949124	
