/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input control /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s -d -m -b -c -r 
/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input atf2 /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s
/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input ctcf /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s
/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input foxa1 /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s
/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input lef1 /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s
/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input scrt1 /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s
/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input tcf7l2 /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s
/data5/deepro/starrseq/papers/reproducibility/1_data_download/in_house/meta_data/metadata.json input 16p12.1 /data5/deepro/starrseq/papers/reproducibility/2_dedup_align_filter/data/in_house/filtered /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/starrpeaker_data/starrpeaker_metadata_hg38.json /data5/deepro/starrseq/papers/reproducibility/4_peak_call/data/cradle_data/cradle_metadata_hg38.json -s
