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   				README -- 4_TE_Analysis
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# All scripts ran with R version 4.1.2 (2021-11-01)

*** All R package versions indicated in cognate scripts ***
	
	1. Ovarian differential TE expression using LRT with DESeq2
		- 1_Ovary_TE_DGE.R
		
	2. Testicular differential TE expression using LRT with DESeq2
		- 2_Testes_TE_DGE.R
		
	3. Plotting TE counts as a fraction of transcriptomes
		- 3_Fractional_TE_Analysis.R
		
	
