#Target	E-value	BitScore	HMM_Start	HMM_End	TargetStart	TargetEnd	HMM_Seq	Ali_Seq	Description
ARX_L343Q	Homeobox	7.9e-25	78.4	1	57	329	385	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRYRTTFTSYQLEEQERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK	
ARX_P353L	Homeobox	1.8e-26	83.7	1	57	329	385	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRYRTTFTSYQLEELERAFQKTHYLDVFTREELAMRLDLTEARVQVWFQNRRAKWRK	
ARX_P353R	Homeobox	9.2e-25	78.2	1	57	329	385	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRYRTTFTSYQLEELERAFQKTHYRDVFTREELAMRLDLTEARVQVWFQNRRAKWRK	
ARX_R332H	Homeobox	3.3e-26	82.8	1	57	329	385	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRYHTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK	
ARX_T333N	Homeobox	2.4e-26	83.2	1	57	329	385	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRYRNTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK	
CRX_E80A	Homeobox	6e-24	75.6	1	57	40	96	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPASRVQVWFKNRRAKCRQ	
CRX_R41Q	Homeobox	4.5e-24	76.0	1	57	40	96	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RQERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ	
CRX_R41W	Homeobox	4.7e-24	75.9	3	57	42	96	kRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	ERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ	
CRX_R90W	Homeobox	5.5e-23	72.5	1	57	40	96	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNWRAKCRQ	
CRX_V66I	Homeobox	1.6e-24	77.4	1	57	40	96	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRERTTFTRSQLEELEALFAKTQYPDIYAREEVALKINLPESRVQVWFKNRRAKCRQ	
ESX1_K193R	Homeobox	8.9e-26	81.4	1	57	140	196	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRARWKR	
HESX1_E149K	Homeobox	1.4e-25	80.8	1	57	109	165	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEKDRIQIWFQNRRAKLKR	
HESX1_N125S	Homeobox	6e-26	82.0	1	57	109	165	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRPRTAFTQNQIEVLESVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKR	
HESX1_R160C	Homeobox	4.9e-24	75.9	1	57	109	165	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRCAKLKR	
HOXB7_K191R	Homeobox	1.5e-23	74.3	1	57	138	194	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMRWKK	
HOXB7_M190L	Homeobox	4.2e-23	72.9	1	57	138	194	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRLKWKK	
HOXB7_R189C	Homeobox	3.4e-22	70.0	1	57	138	194	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRCMKWKK	
HOXC4_N178S	Homeobox	3.5e-24	76.3	1	57	157	213	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	KRSRTAYTRQQVLELEKEFHYSRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK	
HOXC4_R158L	Homeobox	4.2e-24	76.1	3	57	159	213	kRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	SRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK	
HOXD13_I297V	Homeobox	6.1e-20	62.7	1	57	277	333	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKKRVPYTKLQLKELENEYAVNKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK	
HOXD13_I322L	Homeobox	3.2e-19	60.4	1	57	277	333	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTLWFQNRRVKDKK	
HOXD13_N298S	Homeobox	1.4e-19	61.6	1	57	277	333	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKKRVPYTKLQLKELENEYAISKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK	
HOXD13_Q325K	Homeobox	4.2e-19	60.1	1	57	277	333	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFKNRRVKDKK	
HOXD13_Q325R	Homeobox	7.5e-19	59.3	1	57	277	333	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFRNRRVKDKK	
HOXD13_R306W	Homeobox	4e-19	60.1	1	57	277	333	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKKRVPYTKLQLKELENEYAINKFINKDKWRRISAATNLSERQVTIWFQNRRVKDKK	
HOXD13_S316C	Homeobox	2.2e-19	61.0	1	57	277	333	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLCERQVTIWFQNRRVKDKK	
ISX_R83Q	Homeobox	3.1e-25	79.7	2	57	84	139	rkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRK	
MSX2_P148H	Homeobox	8.3e-24	75.1	1	57	143	199	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKPRTHFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKR	
MSX2_R172H	Homeobox	3.3e-23	73.2	1	57	143	199	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKPRTPFTTSQLLALERKFRQKQYLSIAEHAEFSSSLNLTETQVKIWFQNRRAKAKR	
NKX2-5_K183E	Homeobox	2.6e-22	70.4	1	57	139	195	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVEIWFQNRRYKCKR	
NKX2-5_R161P	Homeobox	3.9e-23	73.0	1	57	139	195	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKPRVLFSQAQVYELERRFKQQPYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKR	
NKX2-5_R190C	Homeobox	4.5e-21	66.4	1	57	139	195	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRCYKCKR	
NKX2-5_T178M	Homeobox	4.3e-22	69.6	1	57	139	195	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLMSTQVKIWFQNRRYKCKR	
NKX2-8_A94T	Homeobox	7.3e-22	68.9	1	57	85	141	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	KKRRVLFSKTQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKR	
PBX4_R215Q	Homeobox	5.1e-20	63.0	1	57	211	270	rrkRttftkeqleeLeelFe...enrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRKRQNFSKQATEVLNEYFYshlNNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKK	
PHOX2B_Q143R	Homeobox	5.6e-25	78.9	1	57	99	155	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVRVWFQNRRAKFRK	
PHOX2B_R100L	Homeobox	5.3e-25	79.0	4	57	102	155	RttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK	
PHOX2B_R141G	Homeobox	4e-25	79.3	1	57	99	155	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEAGVQVWFQNRRAKFRK	
PHOX2B_R141Q	Homeobox	5.9e-26	82.0	1	57	99	155	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEAQVQVWFQNRRAKFRK	
PITX2_L100Q	Homeobox	1.4e-22	71.2	1	57	86	142	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRQRTHFTSQQLQEQEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK	
PITX2_R108H	Homeobox	3.3e-25	79.6	1	57	86	142	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRQRTHFTSQQLQELEATFQRNHYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK	
PITX2_R130W	Homeobox	3.4e-24	76.4	1	57	86	142	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVWVWFKNRRAKWRK	
PITX2_T114P	Homeobox	1.2e-24	77.8	1	57	86	142	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRQRTHFTSQQLQELEATFQRNRYPDMSPREEIAVWTNLTEARVRVWFKNRRAKWRK	
PROP1_R112Q	Homeobox	2.6e-25	79.9	1	57	70	126	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEAQIQVWFQNRRAKQRK	
PROP1_R99Q	Homeobox	1.2e-23	74.6	1	57	70	126	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRHRTTFSPVQLEQLESAFGRNQYPDIWAQESLARDTGLSEARIQVWFQNRRAKQRK	
SIX6_H141N	Homeobox	6.7e-15	46.6	5	56	133	184	ttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek	HCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDR	
SIX6_T165A	Homeobox	2.4e-14	44.8	5	56	133	184	ttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek	HCFKERTRHLLREWYLQDPYPNPSKKRELAQAAGLTPTQVGNWFKNRRQRDR	
VAX2_L139M	Homeobox	4.5e-24	76.0	1	57	103	159	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQMNLSETQVKVWFQNRRTKQKK	
VENTX_E101K	Homeobox	1.7e-22	71.0	2	57	93	148	rkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RVRTAFTMKQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKR	
VENTX_R143C	Homeobox	3.3e-21	66.8	2	57	93	148	rkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRCMKHKR	
VSX1_G160D	Homeobox	1.7e-25	80.5	1	57	165	221	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRK	
VSX1_Q175H	Homeobox	2e-24	77.1	1	57	165	221	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRHRTVFTAHHLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRK	
VSX1_R166Q	Homeobox	5.9e-25	78.8	1	57	165	221	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RQHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRK	
VSX2_R200P	Homeobox	5.3e-24	75.7	1	57	149	205	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRPAKWRK	
VSX2_R200Q	Homeobox	1.9e-24	77.2	1	57	149	205	rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk	RRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRQAKWRK	
