***********************************
CHANGES IN VERSION 2.0.2

NEW FEATURES

   o  Remove option add in version 2.0.1: The peaks for which the percentage of the intronic last exon on the last exon exceeds the indicated threshold are kept.

   o  Add replicate option for the automate differential analysis part that takes into account the replicates

***********************************
CHANGES IN VERSION 2.0.1

NEW FEATURES

   o  Add a new option: The peaks for which the percentage of the intronic last exon on the last exon exceeds the indicated threshold are kept.

   o  Add Lexogen option

   o  Migration of all scripts Debian -> CentOS 

***********************************
CHANGES IN VERSION 2.0.0

NEW FEATURES

   o Change the workflow order. 

   o Integrate a trimming and mapping step in this workflow. A complete workflow which input file is fastq.gz format.

***********************************
CHANGES IN VERSION 0.5.0

NEW FEATURES

   o Integrate differential analysis

   o New parameters in configuration file, names COMPARE_SAMPLES, to define the group for differential analysis

***********************************
CHANGES IN VERSION 0.4.0

NEW FEATURES

   o Merge multi samples. Add COMBINE_SAMPLE option in configuration file

   o Add sphinx documentation

***********************************
CHANGES IN VERSION 0.3.0

BUG FIXES

   o Fix bug in getFlankingRegions if the region is larger/smaller than the chromosome size

NEW FEATURES

   o Merge multi samples. If -l is used, all samples are combined before annotation

SIGNIFICANT USER-VISIBLE CHANGES

   o Change the workflow order. Annotation is performed after combining multiple samples
 
***********************************
CHANGES IN VERSION 0.2.0

NEW FEATURES
   
   o Complete workflow from fastq files to list of filtered peaks


