Toolbox

### MultiQC Toolbox

####
Highlight Samples

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####
Rename Samples

Click here for bulk input.

Paste two columns of a tab-delimited table here (eg. from Excel).

First column should be the old name, second column the new name.

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####
Show / Hide Samples

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Show only matching samples

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#### Export Plots

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Note that additional data was saved in `multiqc_data_1` when this report was generated.

##### Choose Plots

If you use plots from MultiQC in a publication or presentation, please cite:

> MultiQC: Summarize analysis results for multiple tools and samples in a single report
> Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
> Bioinformatics (2016)
> doi: 10.1093/bioinformatics/btw354
> PMID: 27312411

#### Save Settings

You can save the toolbox settings for this report to the browser.

#### Load Settings

Choose a saved report profile from the dropdown box below:

#### About MultiQC

This report was generated using MultiQC, version 1.9

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

> MultiQC: Summarize analysis results for multiple tools and samples in a single report
> Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
> Bioinformatics (2016)
> doi: 10.1093/bioinformatics/btw354
> PMID: 27312411

#

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

Loading report..

Report generated on 2021-08-02, 13:15 based on data in:

- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Lvr_11Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Lvr_4Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/ODPE_1Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/ODPE_2Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/ODPE_3Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/ODPE_4Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Panc_1Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Panc_2Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Pnc_11Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Pnc_4Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/RVG_11Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/RVG_4Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Skin_1Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Skin_2Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Skn_11Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Skn_4Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Stom_1Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Stom_2Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/TDPE_1Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/TDPE_2Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/TDPE_3Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/TDPE_4Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Un1Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Un2Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Unext_1Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Unext_2Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Unext_3Log.final.out`
- `/home/administrator/Desktop/ExtraDrive1/Blair/VenomReg_RNA_ReMapping_July2021/STAR_mapped/Unext_4Log.final.out`

Welcome! Not sure where to start? Watch a tutorial video (6:06)

## General Statistics

Showing 28/28 rows and 2/2 columns.

Sample Name | % Aligned | M Aligned
--- | --- | ---
Lvr_11 | 65.9% | 16.6
Lvr_4 | 77.4% | 15.8
ODPE_1 | 71.3% | 13.1
ODPE_2 | 71.6% | 14.2
ODPE_3 | 70.5% | 13.0
ODPE_4 | 70.8% | 16.2
Panc_1 | 79.8% | 18.8
Panc_2 | 80.9% | 19.0
Pnc_11 | 81.9% | 20.2
Pnc_4 | 79.4% | 17.9
RVG_11 | 67.3% | 16.9
RVG_4 | 74.3% | 14.4
Skin_1 | 73.9% | 12.1
Skin_2 | 74.0% | 11.5
Skn_11 | 77.6% | 18.6
Skn_4 | 76.9% | 15.4
Stom_1 | 73.7% | 12.6
Stom_2 | 75.3% | 17.4
TDPE_1 | 70.7% | 18.0
TDPE_2 | 70.8% | 12.9
TDPE_3 | 69.7% | 15.2
TDPE_4 | 71.2% | 16.4
Un1 | 67.5% | 17.9
Un2 | 81.1% | 15.9
Unext_1 | 66.8% | 14.4
Unext_2 | 67.8% | 11.3
Unext_3 | 68.2% | 13.4
Unext_4 | 67.9% | 14.8

#### General Statistics: Columns

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort | Visible | Group | Column | Description | ID | Scale
--- | --- | --- | --- | --- | --- | ---
|| |  | STAR | % Aligned | % Uniquely mapped reads | `uniquely_mapped_percent` | None
|| |  | STAR | M Aligned | Uniquely mapped reads (millions) | `uniquely_mapped` | read_count

## STAR

STAR is an ultrafast universal RNA-seq aligner.

### Alignment Scores

loading..

### Plot Table Data

Please select two table columns.

### Regex Help

Toolbox search strings can behave as regular expressions (regexes). Click a button below to see an example of it in action. Try modifying them yourself in the text box.

    samp_1
    samp_1_edited
    samp_2
    samp_2_edited
    samp_3
    samp_3_edited
    prepended_samp_1
    tmp_samp_1_edited
    tmpp_samp_1_edited
    tmppp_samp_1_edited
    #samp_1_edited.tmp
    samp_11
    samp_11111

See regex101.com for a more heavy duty testing suite.