The scripts and datasets for lineage reconstruction by using VAFs of mosaic mutations

The 6 directories are correspond to ConB23, ConC31, ConD31, ConE29, ConJ12, and ConJ12_900x, respectively.
The "*/data/data_VAF.txt" file is the mutation x tissue VAF data matrix.
The "script_for_*.ipynb" is the script (jupyter notebook) for lineage reconstruction.
The "script_for_*.html" is the html file which is exported from "script_for_*.ipynb".
The reconstructed lineage trees are saved as "*/out/lineage_step1.jpeg" and "*/out/lineage_step2.jpeg": Step1 is based on the rule R1, Step2 is based on the rule R2 (see Fig.1A in the main text).

