Fig. 4EF. Output numbers divided by input numbers are used in Fig. 4E to calculate assignment of alignments to DGs. DGs numbers divided by 100 are used in Fig. 4F to calculate fraction of assembled DGs. 

cliques core=5
t_o,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9
input,5335,5335,5335,5335,5335,5335,5335,5335,5335
output,4935,5100,5136,5107,4579,2902,3025,3983,5007
DGs,74,82,87,90,94,105,323,1021,989

cliques core=10
t_o,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9
input,5335,5335,5335,5335,5335,5335,5335,5335,5335
output,4815,4946,5106,5189,5141,4027,2515,3768,4724
DGs,66,75,83,89,91,96,146,730,1267

cliques core=15
t_o,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9
input,5335,5335,5335,5335,5335,5335,5335,5335,5335
output,4510,4855,4964,5133,5143,4826,2811,3447,4500
DGs,56,68,77,86,90,94,103,502,1404

spectral core=5 t_eig=5
t_o,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9
input,5335,5335,5335,5335,5335,5335,5335,5335,5335
output,5320,5324,5318,5322,5320,5333,5335,5209,2470
DGs,94,109,124,145,153,171,102,140,819

spectral core=5 t_o=0.5
t_eig,1,2,3,4,5,6,7,8,9
input,5335,5335,5335,5335,5335,5335,5335,5335,5335
output,5320,5320,5320,5320,5320,5320,5320,5322,5322
DGs,159,157,153,153,153,153,153,153,153

