Input files (1): 
PARIS_U8U13_hg38pri_only.sam

Output files (6 sam and 1 log): 
PARIS_U8U13_hg38pri_onlybad.sam
PARIS_U8U13_hg38pri_onlycont.sam
PARIS_U8U13_hg38pri_onlygap1.sam
PARIS_U8U13_hg38pri_onlygapm.sam
PARIS_U8U13_hg38pri_onlyhomo.sam
PARIS_U8U13_hg38pri_onlytrans.sam
PARIS_U8U13_hg38pri_onlylog.out
