Type	Position	Nucl1	Freq1	Nucl2	Freq2	NumAs	NumCs	NumGs	NumTs	NumAligned	NumNaive
UNKNOWN	0	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	1	A	1.0	C	0.0	100	0	0	0	100	169225
UNKNOWN	2	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	3	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	4	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	5	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	6	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	7	A	1.0	C	0.0	100	0	0	0	100	169225
UNKNOWN	8	G	0.98	A	0.02	2	0	98	0	100	169225
UNKNOWN	9	C	0.99	T	0.01	0	99	0	1	100	169225
UNKNOWN	10	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	11	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	12	C	0.98	T	0.02	0	98	0	2	100	169225
UNKNOWN	13	A	0.95	G	0.05	95	0	5	0	100	169225
UNKNOWN	14	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	15	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	16	A	1.0	C	0.0	100	0	0	0	100	169225
UNKNOWN	17	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	18	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	19	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	20	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	21	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	22	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	23	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	24	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	25	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	26	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	27	A	1.0	C	0.0	100	0	0	0	100	169225
UNKNOWN	28	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	29	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	30	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	31	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	32	G	0.99	A	0.01	1	0	99	0	100	169225
UNKNOWN	33	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	34	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	35	G	0.54	A	0.44	44	2	54	0	100	169225
UNKNOWN	36	A	0.97	T	0.02	97	1	0	2	100	169225
UNKNOWN	37	A	0.99	G	0.01	99	0	1	0	100	169225
UNKNOWN	38	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	39	A	0.98	C	0.02	98	2	0	0	100	169225
UNKNOWN	40	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	41	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	42	T	0.99	C	0.01	0	1	0	99	100	169225
UNKNOWN	43	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	44	A	1.0	C	0.0	100	0	0	0	100	169225
UNKNOWN	45	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	46	A	0.99	G	0.01	99	0	1	0	100	169225
UNKNOWN	47	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	48	A	0.99	C	0.01	99	1	0	0	100	169225
UNKNOWN	49	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	50	C	0.98	A	0.02	2	98	0	0	100	169225
UNKNOWN	51	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	52	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	53	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	54	T	0.99	C	0.01	0	1	0	99	100	169225
UNKNOWN	55	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	56	C	0.99	T	0.01	0	99	0	1	100	169225
UNKNOWN	57	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	58	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	59	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	60	A	0.99	C	0.01	99	1	0	0	100	169225
UNKNOWN	61	C	0.98	G	0.02	0	98	2	0	100	169225
UNKNOWN	62	C	0.97	T	0.03	0	97	0	3	100	169225
UNKNOWN	63	T	0.99	C	0.01	0	1	0	99	100	169225
UNKNOWN	64	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	65	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	66	A	0.99	C	0.01	99	1	0	0	100	169225
UNKNOWN	67	C	0.99	T	0.01	0	99	0	1	100	169225
UNKNOWN	68	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	69	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	70	C	0.99	T	0.01	0	99	0	1	100	169225
UNKNOWN	71	C	0.99	G	0.01	0	99	1	0	100	169225
UNKNOWN	72	T	0.99	C	0.01	0	1	0	99	100	169225
UNKNOWN	73	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	74	T	0.95	C	0.05	0	5	0	95	100	169225
UNKNOWN	75	G	0.98	A	0.02	2	0	98	0	100	169225
UNKNOWN	76	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	77	A	0.98	C	0.01	98	1	0	1	100	169225
UNKNOWN	78	T	0.99	G	0.01	0	0	1	99	100	169225
UNKNOWN	79	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	80	A	0.94	C	0.05	94	5	0	1	100	169225
UNKNOWN	81	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	82	C	0.98	A	0.01	1	98	0	1	100	169225
UNKNOWN	83	A	1.0	C	0.0	100	0	0	0	100	169225
UNKNOWN	84	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	85	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	86	A	0.98	G	0.02	98	0	2	0	100	169225
UNKNOWN	87	A	0.99	G	0.01	99	0	1	0	100	169225
UNKNOWN	88	C	0.94	T	0.03	0	94	3	3	100	169225
UNKNOWN	89	C	0.94	T	0.05	1	94	0	5	100	169225
UNKNOWN	90	A	0.98	G	0.02	98	0	2	0	100	169225
UNKNOWN	91	G	0.81	C	0.17	2	17	81	0	100	169225
UNKNOWN	92	A	0.77	T	0.19	77	3	1	19	100	169225
UNKNOWN	93	T	0.91	G	0.05	4	0	5	91	100	169225
UNKNOWN	94	A	0.93	C	0.05	93	5	0	2	100	169225
UNKNOWN	95	T	0.98	A	0.01	1	0	1	98	100	169225
UNKNOWN	96	G	0.86	A	0.13	13	1	86	0	100	169225
UNKNOWN	97	G	0.58	A	0.36	36	4	58	2	100	169225
UNKNOWN	98	T	0.79	G	0.18	1	2	18	79	100	169225
UNKNOWN	99	A	0.96	T	0.03	96	0	1	3	100	169225
UNKNOWN	100	T	0.99	A	0.01	1	0	0	99	100	169225
UNKNOWN	101	A	0.98	C	0.02	98	2	0	0	100	169225
UNKNOWN	102	C	0.95	T	0.03	1	95	1	3	100	169225
UNKNOWN	103	A	0.96	C	0.03	96	3	1	0	100	169225
UNKNOWN	104	C	0.97	T	0.02	0	97	1	2	100	169225
UNKNOWN	105	T	0.99	G	0.01	0	0	1	99	100	169225
UNKNOWN	106	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	107	G	0.98	C	0.01	0	1	98	1	100	169225
UNKNOWN	108	G	0.95	A	0.03	3	1	95	1	100	169225
UNKNOWN	109	T	0.99	C	0.01	0	1	0	99	100	169225
UNKNOWN	110	C	0.98	T	0.02	0	98	0	2	100	169225
UNKNOWN	111	C	0.97	T	0.02	0	97	1	2	100	169225
UNKNOWN	112	G	0.98	A	0.01	1	1	98	0	100	169225
UNKNOWN	113	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	114	C	0.99	A	0.01	1	99	0	0	100	169225
UNKNOWN	115	A	0.99	G	0.01	99	0	1	0	100	169225
UNKNOWN	116	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	117	G	0.99	C	0.01	0	1	99	0	100	169225
UNKNOWN	118	C	0.99	T	0.01	0	99	0	1	100	169225
UNKNOWN	119	T	0.98	C	0.02	0	2	0	98	100	169225
UNKNOWN	120	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	121	C	0.99	A	0.01	1	99	0	0	100	169225
UNKNOWN	122	A	0.98	G	0.02	98	0	2	0	100	169225
UNKNOWN	123	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	124	G	0.99	A	0.01	1	0	99	0	100	169225
UNKNOWN	125	A	0.98	G	0.02	98	0	2	0	100	169225
UNKNOWN	126	A	1.0	C	0.0	100	0	0	0	100	169225
UNKNOWN	127	A	0.97	G	0.03	97	0	3	0	100	169225
UNKNOWN	128	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	129	G	0.99	C	0.01	0	1	99	0	100	169225
UNKNOWN	130	C	0.99	G	0.01	0	99	1	0	100	169225
UNKNOWN	131	G	0.98	A	0.01	1	1	98	0	100	169225
UNKNOWN	132	C	0.99	T	0.01	0	99	0	1	100	169225
UNKNOWN	133	T	0.99	G	0.01	0	0	1	99	100	169225
UNKNOWN	134	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	135	G	0.99	A	0.01	1	0	99	0	100	169225
UNKNOWN	136	A	0.98	C	0.01	98	1	1	0	100	169225
UNKNOWN	137	G	0.99	T	0.01	0	0	99	1	100	169225
UNKNOWN	138	T	0.99	G	0.01	0	0	1	99	100	169225
UNKNOWN	139	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	140	G	0.96	T	0.03	0	1	96	3	100	169225
UNKNOWN	141	C	0.99	T	0.01	0	99	0	1	100	169225
UNKNOWN	142	T	1.0	A	0.0	0	0	0	100	100	169225
UNKNOWN	143	T	0.98	C	0.01	0	1	1	98	100	169225
UNKNOWN	144	G	1.0	A	0.0	0	0	100	0	100	169225
UNKNOWN	145	G	0.99	T	0.01	0	0	99	1	100	169225
UNKNOWN	146	T	0.96	A	0.02	2	1	1	96	100	169225
UNKNOWN	147	G	0.73	T	0.17	5	5	73	17	100	169225
UNKNOWN	148	A	0.87	G	0.09	87	2	9	2	100	169225
UNKNOWN	149	T	0.96	G	0.04	0	0	4	96	100	169225
UNKNOWN	150	A	0.72	T	0.18	72	0	10	18	100	169225
UNKNOWN	151	T	0.99	A	0.01	1	0	0	99	100	169225
UNKNOWN	152	A	0.98	G	0.02	98	0	2	0	100	169225
UNKNOWN	153	A	0.85	G	0.15	85	0	15	0	100	169225
UNKNOWN	154	G	0.95	A	0.03	3	1	95	1	100	169225
UNKNOWN	155	C	0.74	T	0.21	4	74	1	21	100	169225
UNKNOWN	156	A	0.93	G	0.07	93	0	7	0	100	169225
UNKNOWN	157	G	0.94	C	0.03	1	3	94	2	100	169225
UNKNOWN	158	T	0.98	C	0.01	0	1	1	98	100	169225
UNKNOWN	159	G	0.57	A	0.24	24	17	57	2	100	169225
UNKNOWN	160	G	0.93	A	0.03	3	3	93	1	100	169225
UNKNOWN	161	T	0.98	A	0.01	1	0	1	98	100	169225
UNKNOWN	162	G	0.99	A	0.01	1	0	99	0	100	169225
UNKNOWN	163	G	0.99	A	0.01	1	0	99	0	100	169225
UNKNOWN	164	A	0.98	G	0.02	98	0	2	0	100	169225
UNKNOWN	165	A	0.99	G	0.01	99	0	1	0	100	169225
UNKNOWN	166	G	0.85	T	0.09	5	1	85	9	100	169225
UNKNOWN	167	C	0.87	T	0.08	1	87	4	8	100	169225
UNKNOWN	168	A	0.51	T	0.47	51	1	1	47	100	169225
UNKNOWN	169	C	0.98	A	0.01	1	98	0	1	100	169225
UNKNOWN	170	A	0.96	G	0.03	96	1	3	0	100	169225
UNKNOWN	171	G	0.78	T	0.18	2	2	78	18	100	169225
UNKNOWN	172	G	0.75	T	0.19	3	3	75	19	100	169225
UNKNOWN	173	C	0.98	A	0.01	1	98	0	1	100	169225
UNKNOWN	174	T	0.99	A	0.01	1	0	0	99	100	169225
UNKNOWN	175	A	0.99	T	0.01	99	0	0	1	100	169225
UNKNOWN	176	T	0.99	A	0.01	1	0	0	99	100	169225
UNKNOWN	177	A	0.98	C	0.01	98	1	1	0	100	169225
UNKNOWN	178	A	0.99	C	0.01	99	1	0	0	100	169225
UNKNOWN	179	C	0.91	T	0.09	0	91	0	9	100	169225
UNKNOWN	180	C	1.0	A	0.0	0	100	0	0	100	169225
UNKNOWN	181	C	0.98	A	0.01	1	98	0	1	100	169225
UNKNOWN	182	A	0.97	C	0.02	97	2	1	0	100	169225
UNKNOWN	183	G	0.98	C	0.02	0	2	98	0	100	169225
UNKNOWN	184	C	0.5	G	0.48	2	50	48	0	100	169225
UNKNOWN	185	C	0.99	G	0.01	0	99	1	0	100	169225
UNKNOWN	186	C	0.97	A	0.02	2	97	0	1	100	169225
UNKNOWN	187	T	0.98	A	0.01	1	0	1	98	100	169225
UNKNOWN	188	G	0.98	A	0.02	2	0	98	0	100	169225
UNKNOWN	189	A	0.98	T	0.01	98	0	1	1	100	169225
UNKNOWN	190	A	0.99	C	0.01	99	1	0	0	100	169225
UNKNOWN	191	A	0.98	C	0.01	98	1	0	1	100	169225
UNKNOWN	192	T	0.98	C	0.02	0	2	0	98	100	169225
UNKNOWN	193	C	0.97	G	0.02	0	97	2	1	100	169225
UNKNOWN	194	C	0.99	G	0.01	0	99	1	0	100	169225
UNKNOWN	195	C	0.99	G	0.01	0	99	1	0	100	169225
UNKNOWN	196	G	0.99	T	0.01	0	0	99	1	100	169225
UNKNOWN	197	G	0.93	C	0.04	3	4	93	0	100	169225
UNKNOWN	198	C	0.98	A	0.01	1	98	0	1	100	169225
UNKNOWN	199	T	0.97	C	0.02	0	2	1	97	100	169225
UNKNOWN	200	C	0.98	A	0.01	1	98	0	1	100	169225
UNKNOWN	201	A	0.97	G	0.02	97	1	2	0	100	169225
UNKNOWN	202	G	0.97	T	0.02	0	1	97	2	100	169225
UNKNOWN	203	C	0.98	A	0.02	2	98	0	0	100	169225
UNKNOWN	204	A	0.98	T	0.02	98	0	0	2	100	169225
UNKNOWN	205	T	0.95	C	0.04	0	4	1	95	100	169225
UNKNOWN	206	C	0.98	A	0.02	2	98	0	0	100	169225
UNKNOWN	207	A	0.98	C	0.02	98	2	0	0	100	169225
UNKNOWN	208	C	0.98	A	0.01	1	98	1	0	100	169225
UNKNOWN	209	C	0.95	A	0.02	2	95	1	2	100	169225
UNKNOWN	210	A	0.97	C	0.02	97	2	1	0	100	169225
UNKNOWN	211	A	0.97	G	0.03	97	0	3	0	100	169225
UNKNOWN	212	G	0.99	C	0.01	0	1	99	0	100	169225
UNKNOWN	213	G	0.97	A	0.03	3	0	97	0	100	169225
UNKNOWN	214	A	0.97	C	0.02	97	2	1	0	100	169225
UNKNOWN	215	C	0.96	A	0.04	4	96	0	0	100	169225
UNKNOWN	216	A	0.95	G	0.04	95	0	4	1	100	169225
UNKNOWN	217	A	0.97	C	0.03	97	3	0	0	100	169225
UNKNOWN	218	C	0.96	T	0.02	1	96	1	2	100	169225
UNKNOWN	219	T	0.93	C	0.05	1	5	1	93	100	169225
UNKNOWN	220	C	0.97	A	0.02	2	97	1	0	100	169225
UNKNOWN	221	C	0.96	A	0.02	2	96	1	1	100	169225
UNKNOWN	222	A	0.98	G	0.02	98	0	2	0	100	169225
UNKNOWN	223	A	0.97	G	0.03	97	0	3	0	100	169225
UNKNOWN	224	G	0.97	A	0.02	2	1	97	0	100	169225
UNKNOWN	225	A	0.96	G	0.03	96	1	3	0	100	169225
UNKNOWN	226	G	0.96	A	0.02	2	2	96	0	100	169225
UNKNOWN	227	C	0.98	A	0.01	1	98	0	1	100	169225
UNKNOWN	228	C	0.97	A	0.02	2	97	1	0	100	169225
UNKNOWN	229	A	0.99	T	0.01	99	0	0	1	100	169225
UNKNOWN	230	A	0.96	G	0.03	96	1	3	0	100	169225
UNKNOWN	231	G	0.91	A	0.05	5	0	91	4	100	169225
UNKNOWN	232	T	0.95	C	0.05	0	5	0	95	100	169225
UNKNOWN	233	C	0.97	T	0.03	0	97	0	3	100	169225
UNKNOWN	234	T	0.97	C	0.03	0	3	0	97	100	169225
UNKNOWN	235	C	0.97	T	0.03	0	97	0	3	100	169225
UNKNOWN	236	T	0.97	C	0.02	0	2	1	97	100	169225
UNKNOWN	237	C	0.97	T	0.03	0	97	0	3	100	169225
UNKNOWN	238	T	0.95	G	0.03	1	1	3	95	100	169225
UNKNOWN	239	G	0.97	T	0.02	1	0	97	2	100	169225
UNKNOWN	240	T	0.97	C	0.03	0	3	0	97	100	169225
UNKNOWN	241	C	0.97	A	0.02	2	97	0	1	100	169225
UNKNOWN	242	A	0.96	C	0.02	96	2	1	1	100	169225
UNKNOWN	243	C	0.94	A	0.02	2	94	2	2	100	169225
UNKNOWN	244	T	0.96	G	0.03	1	0	3	96	100	169225
UNKNOWN	245	G	0.96	A	0.03	3	1	96	0	100	169225
UNKNOWN	246	A	0.97	G	0.02	97	0	2	1	100	169225
UNKNOWN	247	G	0.97	C	0.03	0	3	97	0	100	169225
UNKNOWN	248	C	0.96	A	0.02	2	96	1	1	100	169225
UNKNOWN	249	A	0.97	G	0.02	97	1	2	0	100	169225
UNKNOWN	250	G	0.97	C	0.02	0	2	97	1	100	169225
UNKNOWN	251	C	0.98	G	0.02	0	98	2	0	100	169225
UNKNOWN	252	C	0.92	G	0.04	2	92	4	2	100	169225
UNKNOWN	253	T	0.96	C	0.02	0	2	2	96	100	169225
UNKNOWN	254	G	0.97	A	0.03	3	0	97	0	100	169225
UNKNOWN	255	A	0.95	C	0.05	95	5	0	0	100	169225
UNKNOWN	256	C	0.98	A	0.02	2	98	0	0	100	169225
UNKNOWN	257	A	0.95	C	0.02	95	2	2	1	100	169225
UNKNOWN	258	C	0.96	A	0.02	2	96	1	1	100	169225
UNKNOWN	259	C	0.97	T	0.02	1	97	0	2	100	169225
UNKNOWN	260	T	0.95	G	0.04	0	1	4	95	100	169225
UNKNOWN	261	G	0.97	A	0.02	2	0	97	1	100	169225
UNKNOWN	262	A	0.96	G	0.03	96	1	3	0	100	169225
UNKNOWN	263	G	0.99	C	0.01	0	1	99	0	100	169225
UNKNOWN	264	G	0.97	A	0.02	2	0	97	1	100	169225
UNKNOWN	265	A	0.97	C	0.03	97	3	0	0	100	169225
UNKNOWN	266	C	0.97	A	0.02	2	97	0	1	100	169225
UNKNOWN	267	T	0.91	A	0.05	5	2	2	91	100	169225
UNKNOWN	268	C	0.96	A	0.03	3	96	0	1	100	169225
UNKNOWN	269	A	0.91	G	0.07	91	2	7	0	100	169225
UNKNOWN	270	G	0.97	C	0.02	1	2	97	0	100	169225
UNKNOWN	271	C	0.97	A	0.01	1	97	1	1	100	169225
UNKNOWN	272	C	0.97	A	0.03	3	97	0	0	100	169225
UNKNOWN	273	A	0.96	C	0.02	96	2	0	2	100	169225
UNKNOWN	274	C	0.97	A	0.03	3	97	0	0	100	169225
UNKNOWN	275	A	0.97	C	0.02	97	2	0	1	100	169225
UNKNOWN	276	T	0.97	A	0.02	2	1	0	97	100	169225
UNKNOWN	277	A	0.97	C	0.02	97	2	1	0	100	169225
UNKNOWN	278	C	0.93	T	0.04	3	93	0	4	100	169225
UNKNOWN	279	T	0.94	C	0.04	2	4	0	94	100	169225
UNKNOWN	280	A	0.94	C	0.03	94	3	3	0	100	169225
UNKNOWN	281	C	0.96	T	0.03	1	96	0	3	100	169225
UNKNOWN	282	T	0.95	G	0.04	1	0	4	95	100	169225
