| __add__(self, rsc) | SlimRSCollection.BitRSCollection | |
| __add__(self, rsc) | SlimRSCollection.BitRSCollection | |
| __eq__(self, rsc) | SlimRSCollection.BitRSCollection | |
| __eq__(self, rsc) | SlimRSCollection.BitRSCollection | |
| __getitem__(self, key) | SlimRSCollection.BitRSCollection | |
| __getitem__(self, key) | SlimRSCollection.BitRSCollection | |
| __iadd__(self, rsc) | SlimRSCollection.BitRSCollection | |
| __iadd__(self, rsc) | SlimRSCollection.BitRSCollection | |
| __init__(self) (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection | |
| __init__(self) (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection | |
| __len__(self) | SlimRSCollection.BitRSCollection | |
| __len__(self) | SlimRSCollection.BitRSCollection | |
| add_entry(self, rsidx, e) | SlimRSCollection.BitRSCollection | |
| add_entry(self, rsidx, e) | SlimRSCollection.BitRSCollection | |
| add_entry_from_args(self, chrom, rsid, pos, silent=False) | SlimRSCollection.BitRSCollection | |
| add_entry_from_args(self, chrom, rsid, pos, quiet=False) | SlimRSCollection.BitRSCollection | |
| add_entry_line(self, e) | SlimRSCollection.BitRSCollection | |
| add_entry_line(self, e) | SlimRSCollection.BitRSCollection | |
| BASE_ENC (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection | static |
| chr_pos_table (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection | |
| chrom_to_int(c) | SlimRSCollection.BitRSCollection | static |
| decode_bit(bit_code) | SlimRSCollection.BitRSCollection | static |
| decode_bit(bit_code) | SlimRSCollection.BitRSCollection | static |
| dump_vcf(self, fn, cons=False, is_maj=False, append=False) | SlimRSCollection.BitRSCollection | |
| encode_bit(var_list) | SlimRSCollection.BitRSCollection | static |
| encode_bit(var_list) | SlimRSCollection.BitRSCollection | static |
| entries (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection | |
| filter_vcf(rsc_dir, fn_in, fn_out, pop=None, log_fn=None, quiet=False) | SlimRSCollection.BitRSCollection | static |
| filter_vcf(rsc_dir, fn_in, fn_out, pop=None, log_fn=None, cons=False, keep_samps=False, quiet=False) | SlimRSCollection.BitRSCollection | static |
| get_by_chr_pos(self, chrom, pos) | SlimRSCollection.BitRSCollection | |
| get_by_chr_pos(self, chrom, pos) | SlimRSCollection.BitRSCollection | |
| get_by_rsid(self, rsid) | SlimRSCollection.BitRSCollection | |
| get_by_rsid(self, rsid) | SlimRSCollection.BitRSCollection | |
| get_chrom_from_filename(fn) | SlimRSCollection.BitRSCollection | static |
| get_chrom_from_filename(fn) | SlimRSCollection.BitRSCollection | static |
| get_major(self, mut=True) | SlimRSCollection.BitRSCollection | |
| get_major(self, mut=True) | SlimRSCollection.BitRSCollection | |
| load_from_file_full(fn, quiet=False) | SlimRSCollection.BitRSCollection | static |
| load_from_file_full(fn, quiet=False) | SlimRSCollection.BitRSCollection | static |
| load_from_file_pop(fn, pop, quiet=False) | SlimRSCollection.BitRSCollection | static |
| load_from_file_pop(fn, pop, quiet=False) | SlimRSCollection.BitRSCollection | static |
| open(fn) | SlimRSCollection.BitRSCollection | static |
| open(fn) | SlimRSCollection.BitRSCollection | static |
| rsid_table (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection | |
| sort_rsidx(rsidx) | SlimRSCollection.BitRSCollection | static |
| var_list_to_vcf(rsidx, var_list, cons=False) | SlimRSCollection.BitRSCollection | static |
