| __add__(self, rsc) | RSEntry.RSCollection | |
| __eq__(self, rsc) | RSEntry.RSCollection | |
| __getitem__(self, key) | RSEntry.RSCollection | |
| __iadd__(self, rsc) | RSEntry.RSCollection | |
| __init__(self) (defined in RSEntry.RSCollection) | RSEntry.RSCollection | |
| __len__(self) | RSEntry.RSCollection | |
| __repr__(self) | RSEntry.RSCollection | |
| __str__(self) | RSEntry.RSCollection | |
| add_entry(self, e) | RSEntry.RSCollection | |
| add_entry_from_args(self, chrom, rsid, pos, quiet=False) | RSEntry.RSCollection | |
| chr_pos_table (defined in RSEntry.RSCollection) | RSEntry.RSCollection | |
| chrom_to_int(c) | RSEntry.RSCollection | static |
| dump(self, fn, idx_file, c, rsids=['all'], old_size=0, append=False, chunksize=10000) | RSEntry.RSCollection | |
| dump_chrs(self, chrs, fp_out, store_all=False, store_maj=False) | RSEntry.RSCollection | |
| dump_full(self, fn) | RSEntry.RSCollection | |
| dump_vcf(self, fn, pop=None, cons=False, is_maj=False) | RSEntry.RSCollection | |
| entries (defined in RSEntry.RSCollection) | RSEntry.RSCollection | |
| from_1000gp(fn, index_fn, superpop_fn, quiet=False) | RSEntry.RSCollection | static |
| from_dbsnp(fn, quiet=False) | RSEntry.RSCollection | static |
| from_gnomad(fn, quiet=False) | RSEntry.RSCollection | static |
| get_by_chr(self, chrom) | RSEntry.RSCollection | |
| get_by_chr_pos(self, chrom, pos) | RSEntry.RSCollection | |
| get_by_rsid(self, rsid) | RSEntry.RSCollection | |
| get_chrom_from_filename(fn) | RSEntry.RSCollection | static |
| get_major(self, mut=True) | RSEntry.RSCollection | |
| load_from_file_by_chr_pos(fn, idx_file, c, pos, chunk_idx_dict=None, ret_chunk=False) | RSEntry.RSCollection | static |
| load_from_file_by_rsid(fn, idx_file, rsid, chunk_idx_dict=None, ret_chunk=False) | RSEntry.RSCollection | static |
| load_from_file_full(fn) | RSEntry.RSCollection | static |
| load_from_file_pops(fn, pops, cons=False) | RSEntry.RSCollection | static |
| make_chunk_idx_dict(idx_fn, key_fields=[1, 2]) | RSEntry.RSCollection | static |
| merge_files(fn_list, out_fn, c=None) | RSEntry.RSCollection | static |
| open(fn) | RSEntry.RSCollection | static |
| parse_file_line(d) | RSEntry.RSCollection | static |
| rsid_table (defined in RSEntry.RSCollection) | RSEntry.RSCollection | |
| sort_rsidx(rsidx) | RSEntry.RSCollection | static |
| sort_rsidx_line(line_split) | RSEntry.RSCollection | static |
