ConsDB 1.0 Tool for creating consensus genomes from variant databases.

RSEntry.RSEntry Member List

This is the complete list of members for RSEntry.RSEntry, including all inherited members.

__add__(self, rse) | RSEntry.RSEntry |
__eq__(self, rse) | RSEntry.RSEntry |
__getitem__(self, key) | RSEntry.RSEntry |
__iadd__(self, rse) | RSEntry.RSEntry |
__init__(self, chrom, rsid, pos=None) | RSEntry.RSEntry |
__len__(self) | RSEntry.RSEntry |
__repr__(self) | RSEntry.RSEntry |
__str__(self) | RSEntry.RSEntry |
add_var(self, var) | RSEntry.RSEntry |
add_var_from_args(self, pos, ref, var, major=0, minor=0, clin=[], afs=[], var_type='', pop_afs={}) | RSEntry.RSEntry |
all_vars_empty(self) | RSEntry.RSEntry |
chrom (defined in RSEntry.RSEntry) | RSEntry.RSEntry |
get_major_alleles(self) | RSEntry.RSEntry |
get_major_alleles_pop(self, pop) | RSEntry.RSEntry |
pick_major_allele(self, var_list) | RSEntry.RSEntry |
pos (defined in RSEntry.RSEntry) | RSEntry.RSEntry |
rsid (defined in RSEntry.RSEntry) | RSEntry.RSEntry |
to_vcf(self, pop=None, cons=False, is_maj=False) | RSEntry.RSEntry |
vars (defined in RSEntry.RSEntry) | RSEntry.RSEntry |