ConsDB 1.0 Tool for creating consensus genomes from variant databases.

Here is a list of all documented class members with links to the class documentation for each member:

### - _ -

- __add__() : RSEntry.RSCollection , RSEntry.RSEntry , RSEntry.RSEntry.RSVar , SlimRSCollection.BitRSCollection
- __eq__() : RSEntry.RSCollection , RSEntry.RSEntry , RSEntry.RSEntry.RSVar , SlimRSCollection.BitRSCollection
- __getitem__() : RSEntry.RSCollection , RSEntry.RSEntry , SlimRSCollection.BitRSCollection
- __iadd__() : RSEntry.RSCollection , RSEntry.RSEntry , RSEntry.RSEntry.RSVar , SlimRSCollection.BitRSCollection
- __init__() : RSEntry.RSEntry , RSEntry.RSEntry.RSVar
- __len__() : RSEntry.RSCollection , RSEntry.RSEntry , SlimRSCollection.BitRSCollection
- __repr__() : RSEntry.RSCollection , RSEntry.RSEntry , RSEntry.RSEntry.RSVar
- __str__() : RSEntry.RSCollection , RSEntry.RSEntry , RSEntry.RSEntry.RSVar

### - a -

- add_entry() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- add_entry_from_args() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- add_entry_line() : SlimRSCollection.BitRSCollection
- add_var() : RSEntry.RSEntry
- add_var_from_args() : RSEntry.RSEntry
- af() : RSEntry.RSEntry.RSVar
- all_vars_empty() : RSEntry.RSEntry

### - c -

- calc_afs() : RSEntry.RSEntry.RSVar
- calc_pop_afs() : RSEntry.RSEntry.RSVar
- chrom_to_int() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection

### - d -

- decode_bit() : SlimRSCollection.BitRSCollection
- dump() : RSEntry.RSCollection
- dump_chrs() : RSEntry.RSCollection
- dump_full() : RSEntry.RSCollection
- dump_vcf() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection

### - e -

- encode_bit() : SlimRSCollection.BitRSCollection

### - f -

- filter_vcf() : SlimRSCollection.BitRSCollection
- from_1000gp() : RSEntry.RSCollection
- from_dbsnp() : RSEntry.RSCollection
- from_gnomad() : RSEntry.RSCollection

### - g -

- get_by_chr() : RSEntry.RSCollection
- get_by_chr_pos() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- get_by_rsid() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- get_chrom_from_filename() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- get_major() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- get_major_alleles() : RSEntry.RSEntry
- get_major_alleles_pop() : RSEntry.RSEntry

### - i -

- is_empty() : RSEntry.RSEntry.RSVar
- is_major() : RSEntry.RSEntry.RSVar

### - l -

- load_from_file_by_chr_pos() : RSEntry.RSCollection
- load_from_file_by_rsid() : RSEntry.RSCollection
- load_from_file_full() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- load_from_file_pop() : SlimRSCollection.BitRSCollection
- load_from_file_pops() : RSEntry.RSCollection

### - m -

- make_chunk_idx_dict() : RSEntry.RSCollection
- merge_files() : RSEntry.RSCollection

### - o -

- open() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection

### - p -

- parse_file_line() : RSEntry.RSCollection
- pick_major_allele() : RSEntry.RSEntry
- pop_af() : RSEntry.RSEntry.RSVar

### - s -

- sort_rsidx() : RSEntry.RSCollection , SlimRSCollection.BitRSCollection
- sort_rsidx_line() : RSEntry.RSCollection

### - t -

- to_vcf() : RSEntry.RSEntry

### - v -

- var_code() : RSEntry.RSEntry.RSVar
- var_list_to_vcf() : SlimRSCollection.BitRSCollection