ConsDB 1.0 Tool for creating consensus genomes from variant databases.

SlimRSCollection.BitRSCollection Member List

This is the complete list of members for SlimRSCollection.BitRSCollection, including all inherited members.

__add__(self, rsc) | SlimRSCollection.BitRSCollection |
__add__(self, rsc) | SlimRSCollection.BitRSCollection |
__eq__(self, rsc) | SlimRSCollection.BitRSCollection |
__eq__(self, rsc) | SlimRSCollection.BitRSCollection |
__getitem__(self, key) | SlimRSCollection.BitRSCollection |
__getitem__(self, key) | SlimRSCollection.BitRSCollection |
__iadd__(self, rsc) | SlimRSCollection.BitRSCollection |
__iadd__(self, rsc) | SlimRSCollection.BitRSCollection |
__init__(self) (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection |
__init__(self) (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection |
__len__(self) | SlimRSCollection.BitRSCollection |
__len__(self) | SlimRSCollection.BitRSCollection |
add_entry(self, rsidx, e) | SlimRSCollection.BitRSCollection |
add_entry(self, rsidx, e) | SlimRSCollection.BitRSCollection |
add_entry_from_args(self, chrom, rsid, pos, silent=False) | SlimRSCollection.BitRSCollection |
add_entry_from_args(self, chrom, rsid, pos, quiet=False) | SlimRSCollection.BitRSCollection |
add_entry_line(self, e) | SlimRSCollection.BitRSCollection |
add_entry_line(self, e) | SlimRSCollection.BitRSCollection |
BASE_ENC (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection | static
chr_pos_table (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection |
chrom_to_int(c) | SlimRSCollection.BitRSCollection | static
decode_bit(bit_code) | SlimRSCollection.BitRSCollection | static
decode_bit(bit_code) | SlimRSCollection.BitRSCollection | static
dump_vcf(self, fn, cons=False, is_maj=False, append=False) | SlimRSCollection.BitRSCollection |
encode_bit(var_list) | SlimRSCollection.BitRSCollection | static
encode_bit(var_list) | SlimRSCollection.BitRSCollection | static
entries (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection |
filter_vcf(rsc_dir, fn_in, fn_out, pop=None, log_fn=None, quiet=False) | SlimRSCollection.BitRSCollection | static
filter_vcf(rsc_dir, fn_in, fn_out, pop=None, log_fn=None, cons=False, keep_samps=False, quiet=False) | SlimRSCollection.BitRSCollection | static
get_by_chr_pos(self, chrom, pos) | SlimRSCollection.BitRSCollection |
get_by_chr_pos(self, chrom, pos) | SlimRSCollection.BitRSCollection |
get_by_rsid(self, rsid) | SlimRSCollection.BitRSCollection |
get_by_rsid(self, rsid) | SlimRSCollection.BitRSCollection |
get_chrom_from_filename(fn) | SlimRSCollection.BitRSCollection | static
get_chrom_from_filename(fn) | SlimRSCollection.BitRSCollection | static
get_major(self, mut=True) | SlimRSCollection.BitRSCollection |
get_major(self, mut=True) | SlimRSCollection.BitRSCollection |
load_from_file_full(fn, quiet=False) | SlimRSCollection.BitRSCollection | static
load_from_file_full(fn, quiet=False) | SlimRSCollection.BitRSCollection | static
load_from_file_pop(fn, pop, quiet=False) | SlimRSCollection.BitRSCollection | static
load_from_file_pop(fn, pop, quiet=False) | SlimRSCollection.BitRSCollection | static
open(fn) | SlimRSCollection.BitRSCollection | static
open(fn) | SlimRSCollection.BitRSCollection | static
rsid_table (defined in SlimRSCollection.BitRSCollection) | SlimRSCollection.BitRSCollection |
sort_rsidx(rsidx) | SlimRSCollection.BitRSCollection | static
var_list_to_vcf(rsidx, var_list, cons=False) | SlimRSCollection.BitRSCollection | static