# Table S10: GO terms enriched in the genes with highest DM scores in individual 18 (genotype NA18523) in LCLs. Enrichment performed using GORILLA. N - total number of genes, B - total number of genes associated with a specific GO term, n - number of genes in the top of the user's input list, b - number of genes in the intersection.
GO Term	Description	P-value	FDR q-value	Enrichment	N	B	n	b	Genes
GO:0044085	cellular component biogenesis	3.97E-05	4.59E-01	3.56	6191	48	579	16	"[LTV1  -  ltv1 homolog (s. cerevisiae), ZNF622  -  zinc finger protein 622, RPS16  -  ribosomal protein s16, GTF3A  -  general transcription factor iiia, CEBPZ  -  ccaat/enhancer binding protein (c/ebp), zeta, PEX11A  -  peroxisomal biogenesis factor 11 alpha, RPF2  -  ribosome production factor 2 homolog (s. cerevisiae), PWP1  -  pwp1 homolog (s. cerevisiae), BOP1  -  block of proliferation 1, NIP7  -  nip7, nucleolar pre-rrna processing protein, PAK1IP1  -  pak1 interacting protein 1, ARRDC1  -  arrestin domain containing 1, RPS28  -  ribosomal protein s28, TGS1  -  trimethylguanosine synthase 1, URB2  -  urb2 ribosome biogenesis 2 homolog (s. cerevisiae), SURF6  -  surfeit 6]"
GO:0016070	RNA metabolic process	8.95E-05	5.18E-01	1.45	6191	797	649	121	"[EXOSC5  -  exosome component 5, HSF1  -  heat shock transcription factor 1, SYF2  -  syf2 pre-mrna-splicing factor, HNRNPA0  -  heterogeneous nuclear ribonucleoprotein a0, PLD6  -  phospholipase d family, member 6, DRAP1  -  dr1-associated protein 1 (negative cofactor 2 alpha), BOP1  -  block of proliferation 1, PCBP1  -  poly(rc) binding protein 1, ZFP36L2  -  zfp36 ring finger protein-like 2, GTF2A2  -  general transcription factor iia, 2, 12kda, CWC22  -  cwc22 spliceosome-associated protein homolog (s. cerevisiae), UTP20  -  utp20, small subunit (ssu) processome component, homolog (yeast), GTF2A1  -  general transcription factor iia, 1, 19/37kda, NELFB  -  negative elongation factor complex member b, GTF3A  -  general transcription factor iiia, RPUSD1  -  rna pseudouridylate synthase domain containing 1, KTI12  -  kti12 homolog, chromatin associated (s. cerevisiae), TAF6L  -  taf6-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, TP53RK  -  tp53 regulating kinase, ZC3H8  -  zinc finger ccch-type containing 8, DCAF13  -  ddb1 and cul4 associated factor 13, EXOSC6  -  exosome component 6, USPL1  -  ubiquitin specific peptidase like 1, CSTF2T  -  cleavage stimulation factor, 3' pre-rna, subunit 2, 64kda, tau variant, POLR3K  -  polymerase (rna) iii (dna directed) polypeptide k, 12.3 kda, WDR18  -  wd repeat domain 18, NR1D1  -  nuclear receptor subfamily 1, group d, member 1, TAF9  -  taf9 rna polymerase ii, tata box binding protein (tbp)-associated factor, 32kda, SNRPB2  -  small nuclear ribonucleoprotein polypeptide b, BMS1  -  bms1 ribosome biogenesis factor, TAF7  -  taf7 rna polymerase ii, tata box binding protein (tbp)-associated factor, 55kda, RPP21  -  ribonuclease p/mrp 21kda subunit, SNRPD2  -  small nuclear ribonucleoprotein d2 polypeptide 16.5kda, TAF4B  -  taf4b rna polymerase ii, tata box binding protein (tbp)-associated factor, 105kda, SNRPE  -  small nuclear ribonucleoprotein polypeptide e, SNORA43  -  small nucleolar rna, h/aca box 43, QTRT1  -  queuine trna-ribosyltransferase 1, EIF4A3  -  eukaryotic translation initiation factor 4a3, NABP2  -  nucleic acid binding protein 2, HARS  -  histidyl-trna synthetase, BCDIN3D  -  bcdin3 domain containing, CTU1  -  cytosolic thiouridylase subunit 1, TAF12  -  taf12 rna polymerase ii, tata box binding protein (tbp)-associated factor, 20kda, TAF13  -  taf13 rna polymerase ii, tata box binding protein (tbp)-associated factor, 18kda, RBM15B  -  rna binding motif protein 15b, BAZ2A  -  bromodomain adjacent to zinc finger domain, 2a, IMP4  -  imp4, u3 small nucleolar ribonucleoprotein, homolog (yeast), SNORA9  -  small nucleolar rna, h/aca box 9, CDK9  -  cyclin-dependent kinase 9, LSM5  -  lsm5 homolog, u6 small nuclear rna associated (s. cerevisiae), POLR2L  -  polymerase (rna) ii (dna directed) polypeptide l, 7.6kda, CDK7  -  cyclin-dependent kinase 7, LCMT2  -  leucine carboxyl methyltransferase 2, LSM1  -  lsm1 homolog, u6 small nuclear rna associated (s. cerevisiae), E2F1  -  e2f transcription factor 1, SNORD60  -  small nucleolar rna, c/d box 60, TSEN54  -  tsen54 trna splicing endonuclease subunit, PWP1  -  pwp1 homolog (s. cerevisiae), CTIF  -  cbp80/20-dependent translation initiation factor, NOP10  -  nop10 ribonucleoprotein, MOCS3  -  molybdenum cofactor synthesis 3, SNRNP25  -  small nuclear ribonucleoprotein 25kda (u11/u12), ELAC1  -  elac ribonuclease z 1, TCEANC2  -  transcription elongation factor a (sii) n-terminal and central domain containing 2, POLR2E  -  polymerase (rna) ii (dna directed) polypeptide e, 25kda, YBEY  -  ybey metallopeptidase (putative), PARS2  -  prolyl-trna synthetase 2, mitochondrial (putative), SNORD4A  -  small nucleolar rna, c/d box 4a, SNORD68  -  small nucleolar rna, c/d box 68, WDR4  -  wd repeat domain 4, CSTF1  -  cleavage stimulation factor, 3' pre-rna, subunit 1, 50kda, C9orf156  -  chromosome 9 open reading frame 156, MAGOH  -  mago-nashi homolog, proliferation-associated (drosophila), TAF5L  -  taf5-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, RPL19  -  ribosomal protein l19, ZBTB1  -  zinc finger and btb domain containing 1, PRPF4  -  prp4 pre-mrna processing factor 4 homolog (yeast), EAF1  -  ell associated factor 1, RPF2  -  ribosome production factor 2 homolog (s. cerevisiae), FAM207A  -  family with sequence similarity 207, member a, TFB2M  -  transcription factor b2, mitochondrial, SUPV3L1  -  suppressor of var1, 3-like 1 (s. cerevisiae), SIRT7  -  sirtuin 7, UBL5  -  ubiquitin-like 5, APOBEC3G  -  apolipoprotein b mrna editing enzyme, catalytic polypeptide-like 3g, MAZ  -  myc-associated zinc finger protein (purine-binding transcription factor), UTP3  -  utp3, small subunit (ssu) processome component, homolog (s. cerevisiae), TSR3  -  tsr3, 20s rrna accumulation, homolog (s. cerevisiae), MRPL12  -  mitochondrial ribosomal protein l12, TRMT61A  -  trna methyltransferase 61 homolog a (s. cerevisiae), FASTKD5  -  fast kinase domains 5, DDX51  -  dead (asp-glu-ala-asp) box polypeptide 51, ZCRB1  -  zinc finger cchc-type and rna binding motif 1, RPL38  -  ribosomal protein l38, AURKAIP1  -  aurora kinase a interacting protein 1, RPL28  -  ribosomal protein l28, SF3B14  -  splicing factor 3b, 14 kda subunit, NPM3  -  nucleophosmin/nucleoplasmin 3, JUN  -  jun proto-oncogene, RPS16  -  ribosomal protein s16, RNASEK  -  ribonuclease, rnase k, RPS18  -  ribosomal protein s18, TFDP1  -  transcription factor dp-1, NFIL3  -  nuclear factor, interleukin 3 regulated, C10orf2  -  chromosome 10 open reading frame 2, XRN2  -  5'-3' exoribonuclease 2, TRPT1  -  trna phosphotransferase 1, TGS1  -  trimethylguanosine synthase 1, PHRF1  -  phd and ring finger domains 1, KIAA0391  -  kiaa0391, MTERF  -  mitochondrial transcription termination factor, U2AF2  -  u2 small nuclear rna auxiliary factor 2, ZNF830  -  zinc finger protein 830, TRMT13  -  trna methyltransferase 13 homolog (s. cerevisiae), SFSWAP  -  splicing factor, suppressor of white-apricot homolog (drosophila), BRF2  -  brf2, rna polymerase iii transcription initiation factor 50 kda subunit, EXOSC4  -  exosome component 4, SNORD3A  -  small nucleolar rna, c/d box 3a, RPS28  -  ribosomal protein s28, GTF3C4  -  general transcription factor iiic, polypeptide 4, 90kda, CD2BP2  -  cd2 (cytoplasmic tail) binding protein 2]"
GO:0043414	macromolecule methylation	1.55E-04	5.97E-01	2.34	6191	108	687	28	"[WDR4  -  wd repeat domain 4, WDR82  -  wd repeat domain 82, C9orf156  -  chromosome 9 open reading frame 156, PLD6  -  phospholipase d family, member 6, TFB2M  -  transcription factor b2, mitochondrial, BCDIN3D  -  bcdin3 domain containing, SIRT7  -  sirtuin 7, TGS1  -  trimethylguanosine synthase 1, WDR5B  -  wd repeat domain 5b, RBM15B  -  rna binding motif protein 15b, BAZ2A  -  bromodomain adjacent to zinc finger domain, 2a, SETD8  -  set domain containing (lysine methyltransferase) 8, RLF  -  rearranged l-myc fusion, KIAA0391  -  kiaa0391, METTL12  -  methyltransferase like 12, FAM173A  -  family with sequence similarity 173, member a, TRMT13  -  trna methyltransferase 13 homolog (s. cerevisiae), TET2  -  tet methylcytosine dioxygenase 2, BEND3  -  ben domain containing 3, TRMT61A  -  trna methyltransferase 61 homolog a (s. cerevisiae), LCMT2  -  leucine carboxyl methyltransferase 2, PRMT3  -  protein arginine methyltransferase 3, FAM173B  -  family with sequence similarity 173, member b, PWP1  -  pwp1 homolog (s. cerevisiae), C6orf211  -  chromosome 6 open reading frame 211, CARM1  -  coactivator-associated arginine methyltransferase 1, CBLL1  -  cbl proto-oncogene-like 1, e3 ubiquitin protein ligase, MGMT  -  o-6-methylguanine-dna methyltransferase]"
GO:0006351	"transcription, DNA-templated"	2.19E-04	6.32E-01	1.98	6191	173	670	37	"[TAF9  -  taf9 rna polymerase ii, tata box binding protein (tbp)-associated factor, 32kda, TAF7  -  taf7 rna polymerase ii, tata box binding protein (tbp)-associated factor, 55kda, TAF4B  -  taf4b rna polymerase ii, tata box binding protein (tbp)-associated factor, 105kda, HSF1  -  heat shock transcription factor 1, TAF5L  -  taf5-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, JUN  -  jun proto-oncogene, TEFM  -  transcription elongation factor, mitochondrial, NPM3  -  nucleophosmin/nucleoplasmin 3, ZBTB1  -  zinc finger and btb domain containing 1, EAF1  -  ell associated factor 1, TFDP1  -  transcription factor dp-1, DRAP1  -  dr1-associated protein 1 (negative cofactor 2 alpha), TFB2M  -  transcription factor b2, mitochondrial, NFIL3  -  nuclear factor, interleukin 3 regulated, NABP2  -  nucleic acid binding protein 2, C10orf2  -  chromosome 10 open reading frame 2, SIRT7  -  sirtuin 7, GTF2A2  -  general transcription factor iia, 2, 12kda, TAF12  -  taf12 rna polymerase ii, tata box binding protein (tbp)-associated factor, 20kda, TAF13  -  taf13 rna polymerase ii, tata box binding protein (tbp)-associated factor, 18kda, NELFB  -  negative elongation factor complex member b, GTF2A1  -  general transcription factor iia, 1, 19/37kda, BAZ2A  -  bromodomain adjacent to zinc finger domain, 2a, PHRF1  -  phd and ring finger domains 1, CDK9  -  cyclin-dependent kinase 9, POLR2L  -  polymerase (rna) ii (dna directed) polypeptide l, 7.6kda, CDK7  -  cyclin-dependent kinase 7, GTF3A  -  general transcription factor iiia, MRPL12  -  mitochondrial ribosomal protein l12, E2F1  -  e2f transcription factor 1, PWP1  -  pwp1 homolog (s. cerevisiae), ZC3H8  -  zinc finger ccch-type containing 8, GTF3C4  -  general transcription factor iiic, polypeptide 4, 90kda, TCEANC2  -  transcription elongation factor a (sii) n-terminal and central domain containing 2, POLR2E  -  polymerase (rna) ii (dna directed) polypeptide e, 25kda, USPL1  -  ubiquitin specific peptidase like 1, POLR3K  -  polymerase (rna) iii (dna directed) polypeptide k, 12.3 kda]"
GO:0097659	nucleic acid-templated transcription	2.43E-04	5.62E-01	1.96	6191	174	670	37	"[TAF9  -  taf9 rna polymerase ii, tata box binding protein (tbp)-associated factor, 32kda, TAF7  -  taf7 rna polymerase ii, tata box binding protein (tbp)-associated factor, 55kda, TAF4B  -  taf4b rna polymerase ii, tata box binding protein (tbp)-associated factor, 105kda, HSF1  -  heat shock transcription factor 1, TAF5L  -  taf5-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, NPM3  -  nucleophosmin/nucleoplasmin 3, TEFM  -  transcription elongation factor, mitochondrial, JUN  -  jun proto-oncogene, ZBTB1  -  zinc finger and btb domain containing 1, EAF1  -  ell associated factor 1, TFDP1  -  transcription factor dp-1, DRAP1  -  dr1-associated protein 1 (negative cofactor 2 alpha), TFB2M  -  transcription factor b2, mitochondrial, NFIL3  -  nuclear factor, interleukin 3 regulated, NABP2  -  nucleic acid binding protein 2, C10orf2  -  chromosome 10 open reading frame 2, SIRT7  -  sirtuin 7, GTF2A2  -  general transcription factor iia, 2, 12kda, TAF12  -  taf12 rna polymerase ii, tata box binding protein (tbp)-associated factor, 20kda, TAF13  -  taf13 rna polymerase ii, tata box binding protein (tbp)-associated factor, 18kda, GTF2A1  -  general transcription factor iia, 1, 19/37kda, NELFB  -  negative elongation factor complex member b, BAZ2A  -  bromodomain adjacent to zinc finger domain, 2a, PHRF1  -  phd and ring finger domains 1, CDK9  -  cyclin-dependent kinase 9, POLR2L  -  polymerase (rna) ii (dna directed) polypeptide l, 7.6kda, CDK7  -  cyclin-dependent kinase 7, GTF3A  -  general transcription factor iiia, MRPL12  -  mitochondrial ribosomal protein l12, E2F1  -  e2f transcription factor 1, PWP1  -  pwp1 homolog (s. cerevisiae), ZC3H8  -  zinc finger ccch-type containing 8, GTF3C4  -  general transcription factor iiic, polypeptide 4, 90kda, TCEANC2  -  transcription elongation factor a (sii) n-terminal and central domain containing 2, POLR2E  -  polymerase (rna) ii (dna directed) polypeptide e, 25kda, USPL1  -  ubiquitin specific peptidase like 1, POLR3K  -  polymerase (rna) iii (dna directed) polypeptide k, 12.3 kda]"
GO:0006390	mitochondrial transcription	2.70E-04	5.20E-01	5.84	6191	7	908	6	"[TFB2M  -  transcription factor b2, mitochondrial, POLRMT  -  polymerase (rna) mitochondrial (dna directed), C10orf2  -  chromosome 10 open reading frame 2, TEFM  -  transcription elongation factor, mitochondrial, SLC25A33  -  solute carrier family 25 (pyrimidine nucleotide carrier), member 33, MRPL12  -  mitochondrial ribosomal protein l12]"
GO:0034660	ncRNA metabolic process	2.80E-04	4.62E-01	1.72	6191	309	641	55	"[WDR4  -  wd repeat domain 4, EXOSC5  -  exosome component 5, C9orf156  -  chromosome 9 open reading frame 156, PLD6  -  phospholipase d family, member 6, RPF2  -  ribosome production factor 2 homolog (s. cerevisiae), FAM207A  -  family with sequence similarity 207, member a, TFB2M  -  transcription factor b2, mitochondrial, BOP1  -  block of proliferation 1, SIRT7  -  sirtuin 7, GTF2A2  -  general transcription factor iia, 2, 12kda, UTP20  -  utp20, small subunit (ssu) processome component, homolog (yeast), GTF2A1  -  general transcription factor iia, 1, 19/37kda, UTP3  -  utp3, small subunit (ssu) processome component, homolog (s. cerevisiae), TSR3  -  tsr3, 20s rrna accumulation, homolog (s. cerevisiae), GTF3A  -  general transcription factor iiia, TRMT61A  -  trna methyltransferase 61 homolog a (s. cerevisiae), RPUSD1  -  rna pseudouridylate synthase domain containing 1, KTI12  -  kti12 homolog, chromatin associated (s. cerevisiae), DDX51  -  dead (asp-glu-ala-asp) box polypeptide 51, TP53RK  -  tp53 regulating kinase, ZC3H8  -  zinc finger ccch-type containing 8, DCAF13  -  ddb1 and cul4 associated factor 13, EXOSC6  -  exosome component 6, USPL1  -  ubiquitin specific peptidase like 1, WDR18  -  wd repeat domain 18, TAF9  -  taf9 rna polymerase ii, tata box binding protein (tbp)-associated factor, 32kda, BMS1  -  bms1 ribosome biogenesis factor, RPP21  -  ribonuclease p/mrp 21kda subunit, NPM3  -  nucleophosmin/nucleoplasmin 3, RPS16  -  ribosomal protein s16, QTRT1  -  queuine trna-ribosyltransferase 1, EIF4A3  -  eukaryotic translation initiation factor 4a3, NABP2  -  nucleic acid binding protein 2, XRN2  -  5'-3' exoribonuclease 2, TRPT1  -  trna phosphotransferase 1, HARS  -  histidyl-trna synthetase, BCDIN3D  -  bcdin3 domain containing, CTU1  -  cytosolic thiouridylase subunit 1, TAF13  -  taf13 rna polymerase ii, tata box binding protein (tbp)-associated factor, 18kda, IMP4  -  imp4, u3 small nucleolar ribonucleoprotein, homolog (yeast), KIAA0391  -  kiaa0391, CDK9  -  cyclin-dependent kinase 9, POLR2L  -  polymerase (rna) ii (dna directed) polypeptide l, 7.6kda, CDK7  -  cyclin-dependent kinase 7, TRMT13  -  trna methyltransferase 13 homolog (s. cerevisiae), LCMT2  -  leucine carboxyl methyltransferase 2, TSEN54  -  tsen54 trna splicing endonuclease subunit, EXOSC4  -  exosome component 4, NOP10  -  nop10 ribonucleoprotein, MOCS3  -  molybdenum cofactor synthesis 3, RPS28  -  ribosomal protein s28, GTF3C4  -  general transcription factor iiic, polypeptide 4, 90kda, POLR2E  -  polymerase (rna) ii (dna directed) polypeptide e, 25kda, YBEY  -  ybey metallopeptidase (putative), PARS2  -  prolyl-trna synthetase 2, mitochondrial (putative)]"
GO:0001738	morphogenesis of a polarized epithelium	2.88E-04	4.16E-01	93.8	6191	3	44	2	"[ACTG1  -  actin, gamma 1, LAMA5  -  laminin, alpha 5]"
GO:0090304	nucleic acid metabolic process	2.93E-04	3.77E-01	1.35	6191	1087	652	154	"[EXOSC5  -  exosome component 5, RTEL1  -  regulator of telomere elongation helicase 1, HSF1  -  heat shock transcription factor 1, SYF2  -  syf2 pre-mrna-splicing factor, ORC1  -  origin recognition complex, subunit 1, HNRNPA0  -  heterogeneous nuclear ribonucleoprotein a0, PLD6  -  phospholipase d family, member 6, DRAP1  -  dr1-associated protein 1 (negative cofactor 2 alpha), BOP1  -  block of proliferation 1, PCBP1  -  poly(rc) binding protein 1, ZFP36L2  -  zfp36 ring finger protein-like 2, GTF2A2  -  general transcription factor iia, 2, 12kda, CWC22  -  cwc22 spliceosome-associated protein homolog (s. cerevisiae), UTP20  -  utp20, small subunit (ssu) processome component, homolog (yeast), GTF2A1  -  general transcription factor iia, 1, 19/37kda, NELFB  -  negative elongation factor complex member b, KRBA2  -  krab-a domain containing 2, GTF3A  -  general transcription factor iiia, RPUSD1  -  rna pseudouridylate synthase domain containing 1, KTI12  -  kti12 homolog, chromatin associated (s. cerevisiae), RCHY1  -  ring finger and chy zinc finger domain containing 1, e3 ubiquitin protein ligase, TAF6L  -  taf6-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, OTUB1  -  otu domain, ubiquitin aldehyde binding 1, TP53RK  -  tp53 regulating kinase, ZC3H8  -  zinc finger ccch-type containing 8, DCAF13  -  ddb1 and cul4 associated factor 13, EXOSC6  -  exosome component 6, USPL1  -  ubiquitin specific peptidase like 1, CSTF2T  -  cleavage stimulation factor, 3' pre-rna, subunit 2, 64kda, tau variant, POLR3K  -  polymerase (rna) iii (dna directed) polypeptide k, 12.3 kda, WDR18  -  wd repeat domain 18, NR1D1  -  nuclear receptor subfamily 1, group d, member 1, TAF9  -  taf9 rna polymerase ii, tata box binding protein (tbp)-associated factor, 32kda, SNRPB2  -  small nuclear ribonucleoprotein polypeptide b, BMS1  -  bms1 ribosome biogenesis factor, TAF7  -  taf7 rna polymerase ii, tata box binding protein (tbp)-associated factor, 55kda, RPP21  -  ribonuclease p/mrp 21kda subunit, SNRPD2  -  small nuclear ribonucleoprotein d2 polypeptide 16.5kda, TAF4B  -  taf4b rna polymerase ii, tata box binding protein (tbp)-associated factor, 105kda, SNRPE  -  small nuclear ribonucleoprotein polypeptide e, MCMBP  -  minichromosome maintenance complex binding protein, SNORA43  -  small nucleolar rna, h/aca box 43, JMY  -  junction mediating and regulatory protein, p53 cofactor, NTHL1  -  nth endonuclease iii-like 1 (e. coli), QTRT1  -  queuine trna-ribosyltransferase 1, EIF4A3  -  eukaryotic translation initiation factor 4a3, NABP2  -  nucleic acid binding protein 2, HUS1  -  hus1 checkpoint homolog (s. pombe), HARS  -  histidyl-trna synthetase, BCDIN3D  -  bcdin3 domain containing, CTU1  -  cytosolic thiouridylase subunit 1, TAF12  -  taf12 rna polymerase ii, tata box binding protein (tbp)-associated factor, 20kda, TAF13  -  taf13 rna polymerase ii, tata box binding protein (tbp)-associated factor, 18kda, RBM15B  -  rna binding motif protein 15b, BAZ2A  -  bromodomain adjacent to zinc finger domain, 2a, IMP4  -  imp4, u3 small nucleolar ribonucleoprotein, homolog (yeast), SNORA9  -  small nucleolar rna, h/aca box 9, CDK9  -  cyclin-dependent kinase 9, LSM5  -  lsm5 homolog, u6 small nuclear rna associated (s. cerevisiae), POLR2L  -  polymerase (rna) ii (dna directed) polypeptide l, 7.6kda, CDK7  -  cyclin-dependent kinase 7, TET2  -  tet methylcytosine dioxygenase 2, EME2  -  essential meiotic structure-specific endonuclease subunit 2, LCMT2  -  leucine carboxyl methyltransferase 2, LSM1  -  lsm1 homolog, u6 small nuclear rna associated (s. cerevisiae), E2F1  -  e2f transcription factor 1, SNORD60  -  small nucleolar rna, c/d box 60, TSEN54  -  tsen54 trna splicing endonuclease subunit, PWP1  -  pwp1 homolog (s. cerevisiae), CTIF  -  cbp80/20-dependent translation initiation factor, NOP10  -  nop10 ribonucleoprotein, SNRNP25  -  small nuclear ribonucleoprotein 25kda (u11/u12), MOCS3  -  molybdenum cofactor synthesis 3, ELAC1  -  elac ribonuclease z 1, TCEANC2  -  transcription elongation factor a (sii) n-terminal and central domain containing 2, POLR2E  -  polymerase (rna) ii (dna directed) polypeptide e, 25kda, MGMT  -  o-6-methylguanine-dna methyltransferase, YBEY  -  ybey metallopeptidase (putative), PARS2  -  prolyl-trna synthetase 2, mitochondrial (putative), SNORD4A  -  small nucleolar rna, c/d box 4a, SNORD68  -  small nucleolar rna, c/d box 68, WDR4  -  wd repeat domain 4, CSTF1  -  cleavage stimulation factor, 3' pre-rna, subunit 1, 50kda, C9orf156  -  chromosome 9 open reading frame 156, MAGOH  -  mago-nashi homolog, proliferation-associated (drosophila), TAF5L  -  taf5-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, RPL19  -  ribosomal protein l19, ZBTB1  -  zinc finger and btb domain containing 1, PRPF4  -  prp4 pre-mrna processing factor 4 homolog (yeast), EAF1  -  ell associated factor 1, SMC3  -  structural maintenance of chromosomes 3, RPF2  -  ribosome production factor 2 homolog (s. cerevisiae), FAM207A  -  family with sequence similarity 207, member a, TFB2M  -  transcription factor b2, mitochondrial, SUPV3L1  -  suppressor of var1, 3-like 1 (s. cerevisiae), FANCF  -  fanconi anemia, complementation group f, SIRT7  -  sirtuin 7, SIRT1  -  sirtuin 1, UBL5  -  ubiquitin-like 5, C19orf40  -  chromosome 19 open reading frame 40, APOBEC3G  -  apolipoprotein b mrna editing enzyme, catalytic polypeptide-like 3g, ZBTB48  -  zinc finger and btb domain containing 48, MAZ  -  myc-associated zinc finger protein (purine-binding transcription factor), UTP3  -  utp3, small subunit (ssu) processome component, homolog (s. cerevisiae), TSR3  -  tsr3, 20s rrna accumulation, homolog (s. cerevisiae), MRPL12  -  mitochondrial ribosomal protein l12, TRMT61A  -  trna methyltransferase 61 homolog a (s. cerevisiae), FASTKD5  -  fast kinase domains 5, ZCRB1  -  zinc finger cchc-type and rna binding motif 1, DDX51  -  dead (asp-glu-ala-asp) box polypeptide 51, RPL38  -  ribosomal protein l38, RTFDC1  -  replication termination factor 2 domain containing 1, RAD9A  -  rad9 homolog a (s. pombe), AURKAIP1  -  aurora kinase a interacting protein 1, RPL28  -  ribosomal protein l28, LONP1  -  lon peptidase 1, mitochondrial, SF3B14  -  splicing factor 3b, 14 kda subunit, GRWD1  -  glutamate-rich wd repeat containing 1, NPM3  -  nucleophosmin/nucleoplasmin 3, JUN  -  jun proto-oncogene, UBE2B  -  ubiquitin-conjugating enzyme e2b, RPS16  -  ribosomal protein s16, RNASEK  -  ribonuclease, rnase k, RPS18  -  ribosomal protein s18, TFDP1  -  transcription factor dp-1, NFIL3  -  nuclear factor, interleukin 3 regulated, C10orf2  -  chromosome 10 open reading frame 2, RHNO1  -  rad9-hus1-rad1 interacting nuclear orphan 1, TRPT1  -  trna phosphotransferase 1, XRN2  -  5'-3' exoribonuclease 2, SESN2  -  sestrin 2, TGS1  -  trimethylguanosine synthase 1, CDK2AP1  -  cyclin-dependent kinase 2 associated protein 1, POLE4  -  polymerase (dna-directed), epsilon 4, accessory subunit, PHRF1  -  phd and ring finger domains 1, KIAA0391  -  kiaa0391, U2AF2  -  u2 small nuclear rna auxiliary factor 2, MTERF  -  mitochondrial transcription termination factor, ZNF830  -  zinc finger protein 830, TRMT13  -  trna methyltransferase 13 homolog (s. cerevisiae), BEND3  -  ben domain containing 3, SFSWAP  -  splicing factor, suppressor of white-apricot homolog (drosophila), BRF2  -  brf2, rna polymerase iii transcription initiation factor 50 kda subunit, EXOSC4  -  exosome component 4, XRCC3  -  x-ray repair complementing defective repair in chinese hamster cells 3, RBX1  -  ring-box 1, e3 ubiquitin protein ligase, COPS7A  -  cop9 signalosome subunit 7a, SNORD3A  -  small nucleolar rna, c/d box 3a, UBE2V2  -  ubiquitin-conjugating enzyme e2 variant 2, RPS28  -  ribosomal protein s28, GTF3C4  -  general transcription factor iiic, polypeptide 4, 90kda, CD2BP2  -  cd2 (cytoplasmic tail) binding protein 2, PNKP  -  polynucleotide kinase 3'-phosphatase, UBE2N  -  ubiquitin-conjugating enzyme e2n]"
GO:0005981	regulation of glycogen catabolic process	3.27E-04	3.78E-01	87.82	6191	3	47	2	"[PPP1R3D  -  protein phosphatase 1, regulatory subunit 3d, PPP1R3B  -  protein phosphatase 1, regulatory subunit 3b]"
GO:0022613	ribonucleoprotein complex biogenesis	3.34E-04	3.51E-01	3.33	6191	45	579	14	"[LTV1  -  ltv1 homolog (s. cerevisiae), RPS16  -  ribosomal protein s16, ZNF622  -  zinc finger protein 622, GTF3A  -  general transcription factor iiia, CEBPZ  -  ccaat/enhancer binding protein (c/ebp), zeta, RPF2  -  ribosome production factor 2 homolog (s. cerevisiae), PWP1  -  pwp1 homolog (s. cerevisiae), BOP1  -  block of proliferation 1, NIP7  -  nip7, nucleolar pre-rrna processing protein, PAK1IP1  -  pak1 interacting protein 1, RPS28  -  ribosomal protein s28, TGS1  -  trimethylguanosine synthase 1, URB2  -  urb2 ribosome biogenesis 2 homolog (s. cerevisiae), SURF6  -  surfeit 6]"
GO:0046483	heterocycle metabolic process	5.08E-04	4.89E-01	1.27	6191	1361	734	205	"[POP1  -  processing of precursor 1, ribonuclease p/mrp subunit (s. cerevisiae), EXOSC5  -  exosome component 5, HSF1  -  heat shock transcription factor 1, SCD5  -  stearoyl-coa desaturase 5, THEM4  -  thioesterase superfamily member 4, HNRNPA0  -  heterogeneous nuclear ribonucleoprotein a0, PLD6  -  phospholipase d family, member 6, COX10  -  cytochrome c oxidase assembly homolog 10 (yeast), ZFP36L2  -  zfp36 ring finger protein-like 2, PMM2  -  phosphomannomutase 2, DDX12P  -  dead/h (asp-glu-ala-asp/his) box polypeptide 12, pseudogene, PMM1  -  phosphomannomutase 1, CWC22  -  cwc22 spliceosome-associated protein homolog (s. cerevisiae), ENO1  -  enolase 1, (alpha), RLF  -  rearranged l-myc fusion, ALYREF  -  aly/ref export factor, OTUB1  -  otu domain, ubiquitin aldehyde binding 1, BLVRA  -  biliverdin reductase a, ZC3H8  -  zinc finger ccch-type containing 8, EXOSC6  -  exosome component 6, USPL1  -  ubiquitin specific peptidase like 1, NR1D1  -  nuclear receptor subfamily 1, group d, member 1, SNRPB2  -  small nuclear ribonucleoprotein polypeptide b, RPP21  -  ribonuclease p/mrp 21kda subunit, SNRPD2  -  small nuclear ribonucleoprotein d2 polypeptide 16.5kda, SNRPE  -  small nuclear ribonucleoprotein polypeptide e, MCMBP  -  minichromosome maintenance complex binding protein, QTRT1  -  queuine trna-ribosyltransferase 1, NABP2  -  nucleic acid binding protein 2, HUS1  -  hus1 checkpoint homolog (s. pombe), RBM15B  -  rna binding motif protein 15b, IMP4  -  imp4, u3 small nucleolar ribonucleoprotein, homolog (yeast), LSM5  -  lsm5 homolog, u6 small nuclear rna associated (s. cerevisiae), POLR2L  -  polymerase (rna) ii (dna directed) polypeptide l, 7.6kda, C1QBP  -  complement component 1, q subcomponent binding protein, TET2  -  tet methylcytosine dioxygenase 2, ADK  -  adenosine kinase, MUT  -  methylmalonyl coa mutase, EME2  -  essential meiotic structure-specific endonuclease subunit 2, MVD  -  mevalonate (diphospho) decarboxylase, SNORD60  -  small nucleolar rna, c/d box 60, GNAI3  -  guanine nucleotide binding protein (g protein), alpha inhibiting activity polypeptide 3, E2F1  -  e2f transcription factor 1, NOP10  -  nop10 ribonucleoprotein, FZR1  -  fizzy/cell division cycle 20 related 1 (drosophila), ELAC1  -  elac ribonuclease z 1, TCEANC2  -  transcription elongation factor a (sii) n-terminal and central domain containing 2, POLR2E  -  polymerase (rna) ii (dna directed) polypeptide e, 25kda, SNORD4A  -  small nucleolar rna, c/d box 4a, SNORD68  -  small nucleolar rna, c/d box 68, TYMP  -  thymidine phosphorylase, CSTF1  -  cleavage stimulation factor, 3' pre-rna, subunit 1, 50kda, RPL19  -  ribosomal protein l19, RPF2  -  ribosome production factor 2 homolog (s. cerevisiae), SUPV3L1  -  suppressor of var1, 3-like 1 (s. cerevisiae), FANCF  -  fanconi anemia, complementation group f, UBL5  -  ubiquitin-like 5, C19orf40  -  chromosome 19 open reading frame 40, APOBEC3G  -  apolipoprotein b mrna editing enzyme, catalytic polypeptide-like 3g, ZBTB48  -  zinc finger and btb domain containing 48, HK2  -  hexokinase 2, TSR3  -  tsr3, 20s rrna accumulation, homolog (s. cerevisiae), UTP3  -  utp3, small subunit (ssu) processome component, homolog (s. cerevisiae), MRPL12  -  mitochondrial ribosomal protein l12, TRMT61A  -  trna methyltransferase 61 homolog a (s. cerevisiae), FASTKD5  -  fast kinase domains 5, DDX51  -  dead (asp-glu-ala-asp) box polypeptide 51, EXTL2  -  exostosin-like glycosyltransferase 2, RPL38  -  ribosomal protein l38, ABCB6  -  atp-binding cassette, sub-family b (mdr/tap), member 6, AURKAIP1  -  aurora kinase a interacting protein 1, CBLL1  -  cbl proto-oncogene-like 1, e3 ubiquitin protein ligase, RPL28  -  ribosomal protein l28, LONP1  -  lon peptidase 1, mitochondrial, ALOX5  -  arachidonate 5-lipoxygenase, NPM3  -  nucleophosmin/nucleoplasmin 3, TEFM  -  transcription elongation factor, mitochondrial, LIAS  -  lipoic acid synthetase, JUN  -  jun proto-oncogene, MACROD1  -  macro domain containing 1, UBE2B  -  ubiquitin-conjugating enzyme e2b, RPS16  -  ribosomal protein s16, BUD13  -  bud13 homolog (s. cerevisiae), ERH  -  enhancer of rudimentary homolog (drosophila), RPS18  -  ribosomal protein s18, UCKL1  -  uridine-cytidine kinase 1-like 1, CDK2AP1  -  cyclin-dependent kinase 2 associated protein 1, SNIP1  -  smad nuclear interacting protein 1, MTERF  -  mitochondrial transcription termination factor, ZNF830  -  zinc finger protein 830, RBX1  -  ring-box 1, e3 ubiquitin protein ligase, SRD5A1  -  steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1), RPS28  -  ribosomal protein s28, UBE2V2  -  ubiquitin-conjugating enzyme e2 variant 2, GTF3C4  -  general transcription factor iiic, polypeptide 4, 90kda, CD2BP2  -  cd2 (cytoplasmic tail) binding protein 2, UBE2N  -  ubiquitin-conjugating enzyme e2n, PAICS  -  phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase, RTEL1  -  regulator of telomere elongation helicase 1, SYF2  -  syf2 pre-mrna-splicing factor, ORC1  -  origin recognition complex, subunit 1, PNPO  -  pyridoxamine 5'-phosphate oxidase, DRAP1  -  dr1-associated protein 1 (negative cofactor 2 alpha), DNPH1  -  2'-deoxynucleoside 5'-phosphate n-hydrolase 1, BOP1  -  block of proliferation 1, PCBP1  -  poly(rc) binding protein 1, PCCB  -  propionyl coa carboxylase, beta polypeptide, GTF2A2  -  general transcription factor iia, 2, 12kda, UTP20  -  utp20, small subunit (ssu) processome component, homolog (yeast), GTF2A1  -  general transcription factor iia, 1, 19/37kda, NELFB  -  negative elongation factor complex member b, KRBA2  -  krab-a domain containing 2, GTF3A  -  general transcription factor iiia, RPUSD1  -  rna pseudouridylate synthase domain containing 1, RCHY1  -  ring finger and chy zinc finger domain containing 1, e3 ubiquitin protein ligase, KTI12  -  kti12 homolog, chromatin associated (s. cerevisiae), TAF6L  -  taf6-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, SMG6  -  smg6 nonsense mediated mrna decay factor, RAB23  -  rab23, member ras oncogene family, TP53RK  -  tp53 regulating kinase, DCAF13  -  ddb1 and cul4 associated factor 13, POLR3K  -  polymerase (rna) iii (dna directed) polypeptide k, 12.3 kda, CSTF2T  -  cleavage stimulation factor, 3' pre-rna, subunit 2, 64kda, tau variant, WDR18  -  wd repeat domain 18, TAF9  -  taf9 rna polymerase ii, tata box binding protein (tbp)-associated factor, 32kda, BMS1  -  bms1 ribosome biogenesis factor, TAF7  -  taf7 rna polymerase ii, tata box binding protein (tbp)-associated factor, 55kda, SCD  -  stearoyl-coa desaturase (delta-9-desaturase), TAF4B  -  taf4b rna polymerase ii, tata box binding protein (tbp)-associated factor, 105kda, SNORA43  -  small nucleolar rna, h/aca box 43, PDHB  -  pyruvate dehydrogenase (lipoamide) beta, CTU2  -  cytosolic thiouridylase subunit 2 homolog (s. pombe), JMY  -  junction mediating and regulatory protein, p53 cofactor, NTHL1  -  nth endonuclease iii-like 1 (e. coli), EIF4A3  -  eukaryotic translation initiation factor 4a3, RHOA  -  ras homolog family member a, HARS  -  histidyl-trna synthetase, BCDIN3D  -  bcdin3 domain containing, CTU1  -  cytosolic thiouridylase subunit 1, TAF12  -  taf12 rna polymerase ii, tata box binding protein (tbp)-associated factor, 20kda, TAF13  -  taf13 rna polymerase ii, tata box binding protein (tbp)-associated factor, 18kda, BAZ2A  -  bromodomain adjacent to zinc finger domain, 2a, SNORA9  -  small nucleolar rna, h/aca box 9, CDK9  -  cyclin-dependent kinase 9, CDK7  -  cyclin-dependent kinase 7, LCMT2  -  leucine carboxyl methyltransferase 2, LSM1  -  lsm1 homolog, u6 small nuclear rna associated (s. cerevisiae), TSEN54  -  tsen54 trna splicing endonuclease subunit, PWP1  -  pwp1 homolog (s. cerevisiae), CTIF  -  cbp80/20-dependent translation initiation factor, MOCS3  -  molybdenum cofactor synthesis 3, SNRNP25  -  small nuclear ribonucleoprotein 25kda (u11/u12), MGMT  -  o-6-methylguanine-dna methyltransferase, YBEY  -  ybey metallopeptidase (putative), PARS2  -  prolyl-trna synthetase 2, mitochondrial (putative), WDR4  -  wd repeat domain 4, UCK1  -  uridine-cytidine kinase 1, C9orf156  -  chromosome 9 open reading frame 156, RRP9  -  ribosomal rna processing 9, small subunit (ssu) processome component, homolog (yeast), MAGOH  -  mago-nashi homolog, proliferation-associated (drosophila), TAF5L  -  taf5-like rna polymerase ii, p300/cbp-associated factor (pcaf)-associated factor, 65kda, ZBTB1  -  zinc finger and btb domain containing 1, PRPF4  -  prp4 pre-mrna processing factor 4 homolog (yeast), EAF1  -  ell associated factor 1, SMC3  -  structural maintenance of chromosomes 3, NME3  -  nme/nm23 nucleoside diphosphate kinase 3, FAM207A  -  family with sequence similarity 207, member a, TFB2M  -  transcription factor b2, mitochondrial, SIRT7  -  sirtuin 7, SIRT1  -  sirtuin 1, ENPP4  -  ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative), MAZ  -  myc-associated zinc finger protein (purine-binding transcription factor), ATP5J  -  atp synthase, h+ transporting, mitochondrial fo complex, subunit f6, ZCRB1  -  zinc finger cchc-type and rna binding motif 1, ATP5E  -  atp synthase, h+ transporting, mitochondrial f1 complex, epsilon subunit, RTFDC1  -  replication termination factor 2 domain containing 1, SLC26A2  -  solute carrier family 26 (anion exchanger), member 2, RAD9A  -  rad9 homolog a (s. pombe), NT5C  -  5', 3'-nucleotidase, cytosolic, SF3B14  -  splicing factor 3b, 14 kda subunit, GRWD1  -  glutamate-rich wd repeat containing 1, GPX1  -  glutathione peroxidase 1, RNASEK  -  ribonuclease, rnase k, TFDP1  -  transcription factor dp-1, NFIL3  -  nuclear factor, interleukin 3 regulated, C10orf2  -  chromosome 10 open reading frame 2, RHNO1  -  rad9-hus1-rad1 interacting nuclear orphan 1, XRN2  -  5'-3' exoribonuclease 2, TRPT1  -  trna phosphotransferase 1, DHFR  -  dihydrofolate reductase, SESN2  -  sestrin 2, TGS1  -  trimethylguanosine synthase 1, POLE4  -  polymerase (dna-directed), epsilon 4, accessory subunit, PHRF1  -  phd and ring finger domains 1, KIAA0391  -  kiaa0391, U2AF2  -  u2 small nuclear rna auxiliary factor 2, TRMT13  -  trna methyltransferase 13 homolog (s. cerevisiae), BEND3  -  ben domain containing 3, SFSWAP  -  splicing factor, suppressor of white-apricot homolog (drosophila), EXOSC4  -  exosome component 4, BRF2  -  brf2, rna polymerase iii transcription initiation factor 50 kda subunit, XRCC3  -  x-ray repair complementing defective repair in chinese hamster cells 3, COPS7A  -  cop9 signalosome subunit 7a, SNORD3A  -  small nucleolar rna, c/d box 3a, PNKP  -  polynucleotide kinase 3'-phosphatase]"
GO:0032259	methylation	5.25E-04	4.67E-01	2.13	6191	127	687	30	"[WDR4  -  wd repeat domain 4, WDR82  -  wd repeat domain 82, C9orf156  -  chromosome 9 open reading frame 156, PLD6  -  phospholipase d family, member 6, TFB2M  -  transcription factor b2, mitochondrial, BCDIN3D  -  bcdin3 domain containing, COMTD1  -  catechol-o-methyltransferase domain containing 1, TGS1  -  trimethylguanosine synthase 1, SIRT7  -  sirtuin 7, WDR5B  -  wd repeat domain 5b, RBM15B  -  rna binding motif protein 15b, BAZ2A  -  bromodomain adjacent to zinc finger domain, 2a, SETD8  -  set domain containing (lysine methyltransferase) 8, RLF  -  rearranged l-myc fusion, KIAA0391  -  kiaa0391, METTL12  -  methyltransferase like 12, FAM173A  -  family with sequence similarity 173, member a, TRMT13  -  trna methyltransferase 13 homolog (s. cerevisiae), TET2  -  tet methylcytosine dioxygenase 2, BEND3  -  ben domain containing 3, TRMT61A  -  trna methyltransferase 61 homolog a (s. cerevisiae), LCMT2  -  leucine carboxyl methyltransferase 2, PRMT3  -  protein arginine methyltransferase 3, FAM173B  -  family with sequence similarity 173, member b, C6orf211  -  chromosome 6 open reading frame 211, PWP1  -  pwp1 homolog (s. cerevisiae), CARM1  -  coactivator-associated arginine methyltransferase 1, METTL23  -  methyltransferase like 23, CBLL1  -  cbl proto-oncogene-like 1, e3 ubiquitin protein ligase, MGMT  -  o-6-methylguanine-dna methyltransferase]"
GO:0044262	cellular carbohydrate metabolic process	6.18E-04	5.11E-01	11.55	6191	57	47	5	"[PPP1R3D  -  protein phosphatase 1, regulatory subunit 3d, GNPTG  -  n-acetylglucosamine-1-phosphate transferase, gamma subunit, B3GNT9  -  udp-glcnac:betagal beta-1,3-n-acetylglucosaminyltransferase 9, HK2  -  hexokinase 2, PPP1R3B  -  protein phosphatase 1, regulatory subunit 3b]"
GO:0018023	peptidyl-lysine trimethylation	7.39E-04	5.70E-01	5.63	6191	18	428	7	"[FAM173B  -  family with sequence similarity 173, member b, PWP1  -  pwp1 homolog (s. cerevisiae), WDR82  -  wd repeat domain 82, METTL12  -  methyltransferase like 12, FAM173A  -  family with sequence similarity 173, member a, TET2  -  tet methylcytosine dioxygenase 2, BEND3  -  ben domain containing 3]"