---
title: "Reading scRNA-seq preadipocyte (day-0) UMI-count-matrix "
author: Anushka Gupta
date: February 16th 2021
---

# This notebook reads in output from cellranger for scRNA-seq white and brown preadipocyte data and save as an .rds file. 
```{r}
# Load libraries
library(Seurat)

# Download UMI-count-matrix from GEO # . Update "matrix_dir" with the path to the downloaded folder on your local computer.   
mat_genes <- Read10X(data.dir = "umi_counts/preadipocytes/")
save(mat_genes,file = "rdata/umi.count.preadipocytes.rds")
```