1) Prepare sample.info (#SampleID, Type, path_to_motif.bed)  ## sample.motif.bed is generated from ../00_BSalign_to_end_density_in_marker_region/
2) Run the program
	sh gen.mC.sh  >makefile 	 
	nohup make -j 5 all &
3) output files: sample.hyper90.EndDenistyFlanking1K.profile & sample.hyper90.EndDenistyFlanking1K.pdf
		 sample.hypo20.EndDenistyFlanking1K.profile & sample.hypo20.EndDenistyFlanking1K.pdf
