Package: XCIR
Type: Package
Title: XCI-inference
Version: 1.1.6
Author: Renan Sauteraud, Dajiang Liu
Maintainer: Renan Sauteraud <rxs575@psu.edu>
Description: Models and tools for subject level analysis of X chromosome
  inactivation (XCI) and XCI-escape inference.
License: GPL-2
LazyData: TRUE
biocViews: StatisticalMethod, RNASeq, Sequencing, Coverage
VignetteBuilder: knitr
URL: https://github.com/SRenan/XCIR
BugReports: https://github.com/SRenan/XCIR/issues
Depends:
  methods
Imports:
  stats,
  utils,
  tools,
  data.table,
  Biostrings,
  IRanges,
  VariantAnnotation,
  seqminer,
  ggplot2,
  biomaRt,
  readxl,
  S4Vectors
Suggests:
  knitr,
  rmarkdown
RoxygenNote: 7.1.0
