Processing Bacteroides_vulgatus_57955...
Loading pangenome data for Bacteroides_vulgatus_57955...
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Done! Loaded 3361 genes
Calculating allele freqs...
Done!
Done loading SNP freqs!
Colored=0, Total=19966
Calculating distances for 19966 snps...
Done!
SciPy hierarchical clustering...
Done!
Cluster 1 (n=6734 SNVs, 0.337273)
Cluster 4 (n=4911 SNVs, 0.245968)
Cluster 35 (n=5935 SNVs, 0.297255)
Total clustered SNVs: 17580
Total fraction clustered: 0.880497
Saving final PNG image...	Done!
