Processing Bacteroides_uniformis_57318...
Loading pangenome data for Bacteroides_uniformis_57318...
Done!
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Done! Loaded 3631 genes
Calculating allele freqs...
Done!
Done loading SNP freqs!
Colored=0, Total=26813
Calculating distances for 26813 snps...
Done!
SciPy hierarchical clustering...
Done!
Cluster 1 (n=5989 SNVs, 0.223362)
Cluster 2 (n=5442 SNVs, 0.202961)
Cluster 5 (n=2361 SNVs, 0.0880543)
Cluster 7 (n=3365 SNVs, 0.125499)
Cluster 12 (n=3422 SNVs, 0.127625)
Cluster 16 (n=2839 SNVs, 0.105881)
Total clustered SNVs: 23418
Total fraction clustered: 0.873382
Saving final PNG image...	Done!
