# SNV cluster (all 3 check out)
Eubacterium_rectale_56927	FP929042|522870	4D	657318.4.peg.267	1.000001	0,16,65
Eubacterium_rectale_56927	FP929042|627945	4D	657318.4.peg.375	0.0231092	0,12,67
Eubacterium_rectale_56927	FP929042|631515	1D	657318.4.peg.379	-1e-06	0,11,57
# Genes
Eubacterium_rectale_56927   515619.6.peg.977
# Spiky after near antibiotic
Eubacterium_rectale_56927   657317.3.peg.2606
# Bubble in first third
Eubacterium_rectale_56927   657318.4.peg.862
# Deleted after beginning
# SNV cluster (first one just few barcodes, second one missing, must not have enough coverage)
Bacteroides_caccae_53434	NZ_AAVM02000006|21827	4D	411901.7.peg.2534	0.632153	-16,0,36
Bacteroides_caccae_53434	NZ_AAVM02000007|75170	2D	411901.7.peg.2826	-1e-06	-16,0,42
# gene cluster
Bacteroides_caccae_53434    997873.3.peg.133 
# deleted at end
Bacteroides_caccae_53434    997873.3.peg.1606 
# deleted at end
Bacteroides_caccae_53434    997873.3.peg.3412 
# deleted at end
Bacteroides_caccae_53434    997873.3.peg.3760
# gained at end
Bacteroides_caccae_53434    997873.3.peg.3761 
# gained at end
Bacteroides_caccae_53434    997873.3.peg.3765
# gained at end
Bacteroides_caccae_53434    997873.3.peg.3788
# gained at end
#
# Crossotus gene that things are linked to (SNVs don't have enough coverage to show up)
Butyrivibrio_crossotus_61674    511680.4.peg.1408 
# Crossotus, green cluster
Butyrivibrio_crossotus_61674	NZ_GG663524|1067222	2D	511680.4.peg.1408	0.24	4,7,67
Butyrivibrio_crossotus_61674	NZ_GG663524|1067227	1D	511680.4.peg.1408	0.222222	4,7,67
Butyrivibrio_crossotus_61674	NZ_GG663524|1067238	1D	511680.4.peg.1408	0.222222	4,9,70
Butyrivibrio_crossotus_61674	NZ_GG663524|1067279	2D	511680.4.peg.1408	0.0357143	4,6,65
Butyrivibrio_crossotus_61674	NZ_GG663524|1067286	1D	511680.4.peg.1408	0.037037	4,6,65
Butyrivibrio_crossotus_61674	NZ_GG663524|1067356	1D	511680.4.peg.1408	0.92	4,3,55
Butyrivibrio_crossotus_61674	NZ_GG663524|1067906	2D	511680.4.peg.1408	0.8	4,2,55
Butyrivibrio_crossotus_61674	NZ_GG663524|1068103	1D	511680.4.peg.1408	1.000001	4,7,46
Butyrivibrio_crossotus_61674	NZ_GG663524|574443	1D	511680.4.peg.1959	-1e-06	-16,0,245
# blue cluster
Butyrivibrio_crossotus_61674	NZ_GG663524|1031993	1D	511680.4.peg.1368	-9.99999999918e-07	-16,0,371
Butyrivibrio_crossotus_61674	NZ_GG663524|121012	1D	511680.4.peg.1509	0.0178571	-16,0,253
Butyrivibrio_crossotus_61674	NZ_GG663524|144189	1D	511680.4.peg.1533	-9.99999999918e-07	-16,0,222
Butyrivibrio_crossotus_61674	NZ_GG663524|378231	2D	511680.4.peg.1764	-9.99999999918e-07	-16,2,325
Butyrivibrio_crossotus_61674	NZ_GG663524|380863	1D	511680.4.peg.1767	-9.99999999918e-07	-16,55,302
Butyrivibrio_crossotus_61674	NZ_GG663524|490321	1D	511680.4.peg.1871	-9.99999999918e-07	-16,10,388
Butyrivibrio_crossotus_61674	NZ_GG663520|724	1D	511680.4.peg.402	-9.99999999918e-07	-16,70,367
Butyrivibrio_crossotus_61674	NZ_GG663522|11817	1D	511680.4.peg.875	-9.99999999918e-07	-16,0,438
Butyrivibrio_crossotus_61674	NZ_GG663519|78839	1D	511680.4.peg.91	-9.99999999918e-07	-16,0,301
# B cellulo genes
Bacteroides_cellulosilyticus_58046  1268240.3.peg.4396 
# deleted from Kuleshov (i.e. part of blue cluster)
Bacteroides_cellulosilyticus_58046  997874.3.peg.4413 
# gained after antibiotic
# Massilensius (blue cluster)
Bacteroides_massiliensis_44749	BAJE01000007|29991	1D	1121098.7.peg.1090	-1e-06	-16,4,27
Bacteroides_massiliensis_44749	BAJE01000015|58911	1D	1121098.7.peg.2027	0.99530516	-16,0,33
Bacteroides_massiliensis_44749	BAJE01000028|35357	1D	1121098.7.peg.2936	1.000001	-16,2,44
Bacteroides_massiliensis_44749	BAJE01000005|102020	1D	1121098.7.peg.868	1.000001	-16,3,39
Bacteroides_massiliensis_44749	BAJE01000005|116863	1D	1121098.7.peg.879	1.000001	-16,0,42
# Green cluster (reversion, but then still sticks around)
Bacteroides_massiliensis_44749	BAJE01000014|24103	1D	1121098.7.peg.1891	1.000001	-16,40,40
Bacteroides_massiliensis_44749	BAJE01000025|38675	1D	1121098.7.peg.2788	1.000001	-16,39,39
# Red cluster, most likely to be real
Bacteroides_massiliensis_44749	BAJE01000004|33590	1D	1121098.7.peg.633	-1e-06	-16,0,27
