getData

Function to clean cnv files

getData(
  ...,

    infile = "/Users/Nick_curie/Desktop/parserTest/filtered_231018/summary/merged/all_bps_mech.txt",
  attach_info = system.file("extdata", "samples_names_conversion.txt", package =
    "svBreaks"),
  gene_lengths_file = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
  expression_data = system.file("extdata", "isc_genes_rnaSeq.txt", package =
    "svBreaks"),
  expression_source = "flygut"
)

Arguments

infile	File to process [Required]

Value

Dataframe