Calculate the distance from each breakpoint to closest motif Overlay the same number of random simulated breakpoints

Calculate the distance from each breakpoint to closest motif Overlay the same number of random simulated breakpoints

distOverlay(
  ...,
  breakpoints = NA,
  feature_file = system.file("extdata", "tss_locations.txt", package = "svBreaks"),
  feature = "tss",
  from = "bps",
  lim = 10,
  byChrom = NA,
  n = 5,
  plot = TRUE,
  keep = NULL,
  position = "centre"
)