bpSim — bpSim • svBreaks

Generate simulated SV breakpoints acroos genomic regions (e.g. mappable regions)

bpSim(
  nSites = 1000,
  byChrom = NA,
  iterations = 10,
  intervals = system.file("extdata", "intervals.bed", package = "svBreaks")
)

Arguments

intervals	File containing genomic regions within which to simulate SNVs [Default 'data/intervals.bed]
N	Number of random breakpoints to generate [Default nrow(bp_data)]