Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)

Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)

bpAllGenes(
  ...,
  gene_lengths_in = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
  affected_genes = system.file("extdata", "all_genes_filtered.txt", package =
    "svBreaks"),
  n = 3,
  genome_length = 118274340,
  outfile = NULL
)