sample	chromosome	pos	ref	alt	trinuc	trans	decomp_trinuc	grouped_trans	allele_frequency	caller	variant_type	status	snpEff_anno	feature	gene	id
A373R11	2L	1938632	A	T	GAG	A>T	CTC	T>A	0.321	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tRNA:G3:22BCa	intron	Wdr62	FBgn0031374
A373R11	2L	2317697	G	T	TGC	G>T	GCA	C>A	0.0735	mutect2,strelka	intron_variant	MODIFIER	CG9967	intron	eys	FBgn0031414
A373R11	2L	5885285	G	C	TGA	G>C	TCA	C>G	0.423	somaticsniper,strelka	missense_variant	MODERATE	CG43185	exon	CG43185	FBgn0262814
A373R11	2L	5885286	A	T	GAC	A>T	GTC	T>A	0.4	varscan2,somaticsniper,strelka	missense_variant	MODERATE	CG43185	exon	CG43185	FBgn0262814
A373R11	2L	10499828	T	C	GTG	T>C	GTG	T>C	0.182	somaticsniper,strelka	intron_variant	MODIFIER	Myo31DF	intron	Myo31DF	FBgn0086347
A373R11	2L	11497941	T	A	TTT	T>A	TTT	T>A	0.0877	mutect2,strelka	upstream_gene_variant	MODIFIER	spz4	intron	CG6488	FBgn0032361
A373R11	2L	18803945	T	C	GTA	T>C	GTA	T>C	0.397	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CG43814	intergenic	intergenic	intergenic
A373R11	2R	5090312	A	T	TAG	A>T	CTA	T>A	0.425	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3107	intergenic	intergenic	intergenic
A373R11	2R	5090366	T	A	TTG	T>A	TTG	T>A	0.226	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3107	intergenic	intergenic	intergenic
A373R11	2R	5636779	A	T	TAA	A>T	TTA	T>A	0.186	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG11665	intergenic	intergenic	intergenic
A373R11	2R	5636780	A	G	AAA	A>G	TTT	T>C	0.191	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG11665	intergenic	intergenic	intergenic
A373R11	2R	14221396	T	A	CTA	T>A	CTA	T>A	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	RpS23	intron	CG8468	FBgn0033913
A373R11	2R	17884664	T	A	TTG	T>A	TTG	T>A	0.143	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG30325	intron	Elk	FBgn0011589
A373R11	3L	1294551	C	T	TCT	C>T	TCT	C>T	0.149	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG32333	3UTR	CG32333	FBgn0052333
A373R11	3L	1294552	T	C	CTA	T>C	CTA	T>C	0.149	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG32333	3UTR	CG32333	FBgn0052333
A373R11	3L	1409648	G	C	AGT	G>C	ACT	C>G	0.151	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9168	intron	Ptp61F	FBgn0267487
A373R11	3L	4584100	A	C	TAC	A>C	GTA	T>G	0.269	somaticsniper,strelka	intron_variant	MODIFIER	CG42540	intron	CG42540	FBgn0260657
A373R11	3L	4642796	T	G	GTC	T>G	GTC	T>G	0.2	somaticsniper,strelka	missense_variant	MODERATE	axo	exon_20	axo	FBgn0262870
A373R11	3L	4642797	C	T	TCT	C>T	TCT	C>T	0.176	somaticsniper,strelka	synonymous_variant	LOW	axo	exon_20	axo	FBgn0262870
A373R11	3L	6276318	C	A	ACC	C>A	ACC	C>A	0.294	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	CG43168	3UTR	CG43168	FBgn0262787
A373R11	3L	9742026	A	T	TAG	A>T	CTA	T>A	0.357	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG42268	ncRNA	CR44348	FBgn0265448
A373R11	3L	9742027	G	A	AGC	G>A	GCT	C>T	0.352	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG42268	ncRNA	CR44348	FBgn0265448
A373R11	3L	16874360	T	G	TTT	T>G	TTT	T>G	0.0725	mutect2,strelka	upstream_gene_variant	MODIFIER	CG32170	intron	Lmpt	FBgn0261565
A373R11	3L	21263476	A	T	CAG	A>T	CTG	T>A	0.102	mutect2,strelka	missense_variant	MODERATE	Eip78C	exon_4	Eip78C	FBgn0004865
A373R11	3L	25503902	T	A	ATA	T>A	ATA	T>A	0.315	varscan2,strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
A373R11	3R	10918420	A	G	AAG	A>G	CTT	T>C	0.493	somaticsniper,strelka	intergenic_region	MODIFIER	CR45578-Tengl4	intergenic	intergenic	intergenic
A373R11	3R	21385533	C	A	ACG	C>A	ACG	C>A	0.235	somaticsniper,strelka	upstream_gene_variant	MODIFIER	bap	intergenic	intergenic	intergenic
A373R11	3R	25263347	G	A	TGC	G>A	GCA	C>T	0.397	mutect2,varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	Aats-gln	exon	GlnRS	FBgn0027090
A373R11	3R	30170843	C	T	GCA	C>T	GCA	C>T	0.383	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31030	intron	CG31028	FBgn0051028
A373R11	3R	30170844	A	T	CAT	A>T	ATG	T>A	0.414	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31030	intron	CG31028	FBgn0051028
A373R11	3R	30905930	C	T	GCC	C>T	GCC	C>T	0.53	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33483	intergenic	intergenic	intergenic
A373R11	3R	30905931	C	G	CCG	C>G	CCG	C>G	0.53	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33483	intergenic	intergenic	intergenic
A373R11	X	15956460	A	C	TAT	A>C	ATA	T>G	0.161	somaticsniper,strelka	downstream_gene_variant	MODIFIER	mmd	intron	mmd	FBgn0259110
A373R13	2L	2439328	T	C	TTT	T>C	TTT	T>C	0.245	varscan2,somaticsniper	intron_variant	MODIFIER	dpp	intron	dpp	FBgn0000490
A373R13	2L	3394603	T	A	ATG	T>A	ATG	T>A	0.308	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG34175	intergenic	intergenic	intergenic
A373R13	2L	3960894	G	A	CGA	G>A	TCG	C>T	0.231	varscan2,somaticsniper	intron_variant	MODIFIER	fred	intron	fred	FBgn0051774
A373R13	2L	6091525	G	T	CGT	G>T	ACG	C>A	0.154	varscan2,somaticsniper	5_prime_UTR_premature_start_codon_gain_variant	LOW	Kr-h1	5UTR	CG45075	FBgn0266445
A373R13	2L	7769066	G	A	AGT	G>A	ACT	C>T	0.237	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CG46025	intron	CG7191	FBgn0031945
A373R13	2L	9028026	C	A	ACT	C>A	ACT	C>A	0.385	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG9582	ncRNA	CR44352	FBgn0265452
A373R13	2L	10004867	C	G	GCT	C>G	GCT	C>G	0.186	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	SoYb	exon_1	CR44873	FBgn0266167
A373R13	2L	10679097	A	G	AAG	A>G	CTT	T>C	0.2	somaticsniper,strelka	synonymous_variant	LOW	CG17104	exon	CG17104	FBgn0040496
A373R13	2L	15068747	G	C	AGA	G>C	TCT	C>G	0.162	somaticsniper,strelka	missense_variant	MODERATE	vas	intron	vig	FBgn0024183
A373R13	2L	15068757	T	C	TTC	T>C	TTC	T>C	0.19	somaticsniper,strelka	missense_variant	MODERATE	vas	intron	vig	FBgn0024183
A373R13	2L	17990390	T	G	TTT	T>G	TTT	T>G	0.286	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Prosbeta5R2	intergenic	intergenic	intergenic
A373R13	2L	18352528	C	A	CCC	C>A	CCC	C>A	0.122	varscan2,strelka	downstream_gene_variant	MODIFIER	Acp36DE	intron	Fas3	FBgn0000636
A373R13	2R	5125222	A	G	AAA	A>G	TTT	T>C	0.12	mutect2,strelka	upstream_gene_variant	MODIFIER	gus	intron	gus	FBgn0026238
A373R13	2R	10692712	G	A	CGC	G>A	GCG	C>T	0.289	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	stan	intron	stan	FBgn0024836
A373R13	2R	12671499	C	A	CCT	C>A	CCT	C>A	0.238	somaticsniper,strelka	missense_variant	MODERATE	CG42708	exon	GLS	FBgn0261625
A373R13	2R	13909529	C	A	ACA	C>A	ACA	C>A	0.179	varscan2,somaticsniper	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
A373R13	2R	15232064	C	G	CCA	C>G	CCA	C>G	0.194	varscan2,somaticsniper	intron_variant	MODIFIER	Fs	exon_6	CR44370	FBgn0265508
A373R13	2R	17810777	A	C	CAT	A>C	ATG	T>G	0.211	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	grh	intron	grh	FBgn0259211
A373R13	2R	17882447	T	A	TTA	T>A	TTA	T>A	0.161	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG30325	intron	Elk	FBgn0011589
A373R13	2R	17991485	G	T	TGT	G>T	ACA	C>A	0.0909	mutect2,strelka	intron_variant	MODIFIER	dpr13	intron	dpr13	FBgn0034286
A373R13	2R	19226201	A	G	CAT	A>G	ATG	T>C	0.143	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	hppy	3UTR	hppy	FBgn0263395
A373R13	2R	20724687	C	T	ACC	C>T	ACC	C>T	0.188	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44660	intron	dpr1	FBgn0040726
A373R13	2R	20902568	A	T	TAA	A>T	TTA	T>A	0.269	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	otp	intron	otp	FBgn0015524
A373R13	2R	22460439	A	C	CAT	A>C	ATG	T>G	0.278	somaticsniper,strelka	intron_variant	MODIFIER	CG10384	intron	CG10384	FBgn0034731
A373R13	3L	2795771	C	T	ACC	C>T	ACC	C>T	0.179	somaticsniper,strelka	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A373R13	3L	6109890	T	A	ATA	T>A	ATA	T>A	0.333	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR46001	intron	Ets65A	FBgn0005658
A373R13	3L	6109891	A	G	TAT	A>G	ATA	T>C	0.333	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR46001	intron	Ets65A	FBgn0005658
A373R13	3L	6155091	A	G	AAA	A>G	TTT	T>C	0.231	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Cpr65Ax2	exon_1	CR45421	FBgn0266970
A373R13	3L	8368173	T	G	GTT	T>G	GTT	T>G	0.27	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	ImpE1	intergenic	intergenic	intergenic
A373R13	3L	10704714	C	T	ACA	C>T	ACA	C>T	0.19	somaticsniper,strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
A373R13	3L	10704715	A	C	CAT	A>C	ATG	T>G	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
A373R13	3L	11179847	G	A	GGC	G>A	GCC	C>T	0.417	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG14142	intron	GlcAT-P	FBgn0036144
A373R13	3L	12197473	T	A	TTT	T>A	TTT	T>A	0.182	somaticsniper,strelka	upstream_gene_variant	MODIFIER	thoc6	intergenic	intergenic	intergenic
A373R13	3L	12240093	G	A	TGC	G>A	GCA	C>T	0.353	somaticsniper,strelka	intron_variant	MODIFIER	app	intron	app	FBgn0260941
A373R13	3L	13334129	G	A	CGT	G>A	ACG	C>T	0.358	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CG14113	intergenic	intergenic	intergenic
A373R13	3L	18924664	G	A	TGA	G>A	TCA	C>T	0.211	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG18223	intron	CG32204	FBgn0052204
A373R13	3R	5008	A	G	AAA	A>G	TTT	T>C	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A373R13	3R	5009	A	T	AAA	A>T	TTT	T>A	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A373R13	3R	2879631	A	C	CAG	A>C	CTG	T>G	0.2	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A373R13	3R	5043350	G	A	AGC	G>A	GCT	C>T	0.148	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR43635	intergenic	intergenic	intergenic
A373R13	3R	9294995	T	C	ATT	T>C	ATT	T>C	0.538	mutect2,varscan2,somaticsniper,strelka,freebayes	3_prime_UTR_variant	MODIFIER	CG8861	3UTR	CG8861	FBgn0037676
A373R13	3R	12429457	A	G	TAA	A>G	TTA	T>C	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Pp1-87B	intergenic	intergenic	intergenic
A373R13	3R	14414025	C	A	ACC	C>A	ACC	C>A	0.192	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	natalisin	intron	cv-c	FBgn0086901
A373R13	3R	14414027	A	C	CAA	A>C	TTG	T>G	0.2	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	natalisin	intron	cv-c	FBgn0086901
A373R13	3R	16903093	T	C	GTG	T>C	GTG	T>C	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	iab-8	ncRNA	iab-8	FBgn0264857
A373R13	3R	16903099	G	A	AGT	G>A	ACT	C>T	0.154	somaticsniper,strelka	upstream_gene_variant	MODIFIER	iab-8	ncRNA	iab-8	FBgn0264857
A373R13	3R	20802220	G	T	TGA	G>T	TCA	C>A	0.147	varscan2,somaticsniper	intron_variant	MODIFIER	Syp	intron	Syp	FBgn0038826
A373R13	3R	21666841	T	A	ATA	T>A	ATA	T>A	0.19	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6353	intron	DNApol-alpha180	FBgn0259113
A373R13	3R	21837486	A	G	CAG	A>G	CTG	T>C	0.154	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Gr93a	intergenic	intergenic	intergenic
A373R13	3R	22732125	G	T	CGA	G>T	TCG	C>A	0.35	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	CG45049	3UTR	CG45049	FBgn0266409
A373R13	3R	23225183	A	G	AAG	A>G	CTT	T>C	0.417	somaticsniper,strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
A373R13	3R	25521036	T	C	ATA	T>C	ATA	T>C	0.2	somaticsniper,strelka	intron_variant	MODIFIER	msi	intron	msi	FBgn0011666
A373R13	3R	25566446	C	T	GCT	C>T	GCT	C>T	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	msi	intron	msi	FBgn0011666
A373R13	3R	26204753	G	C	CGT	G>C	ACG	C>G	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CR44320	ncRNA	CR44320	FBgn0265379
A373R13	3R	30255615	T	C	TTT	T>C	TTT	T>C	0.219	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG34299	intergenic	intergenic	intergenic
A373R13	3R	30360867	A	G	AAC	A>G	GTT	T>C	0.231	varscan2,somaticsniper	synonymous_variant	LOW	hdc	exon	hdc	FBgn0010113
A373R13	3R	31497837	G	A	CGT	G>A	ACG	C>T	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	mey	intergenic	intergenic	intergenic
A373R13	3R	31497838	T	C	GTA	T>C	GTA	T>C	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	mey	intergenic	intergenic	intergenic
A373R13	X	7218612	A	G	CAG	A>G	CTG	T>C	0.2	mutect2,somaticsniper	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A373R13	X	13347222	C	A	ACA	C>A	ACA	C>A	0.278	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45708	intergenic	intergenic	intergenic
A373R13	X	14503474	C	T	TCG	C>T	TCG	C>T	0.167	mutect2,varscan2	intergenic_region	MODIFIER	CG12540-CR44110	intergenic	intergenic	intergenic
A373R13	X	16636146	G	A	TGC	G>A	GCA	C>T	0.273	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG9777	intron	Rok	FBgn0026181
A373R13	X	22926416	C	A	TCC	C>A	TCC	C>A	0.233	mutect2,somaticsniper	intergenic_region	MODIFIER	CR41352-CG41106	intergenic	intergenic	intergenic
A373R1	2L	1238728	G	C	AGC	G>C	GCT	C>G	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5397	intergenic	intergenic	intergenic
A373R1	2L	1558639	G	A	TGT	G>A	ACA	C>T	0.312	mutect2,somaticsniper	intron_variant	MODIFIER	haf	intron	haf	FBgn0261509
A373R1	2L	2119941	C	T	GCA	C>T	GCA	C>T	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	dpr3-CG4259	intergenic	intergenic	intergenic
A373R1	2L	2205812	G	T	CGC	G>T	GCG	C>A	0.167	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG31668	exon_2	CG31668	FBgn0051668
A373R1	2L	3819082	C	A	TCT	C>A	TCT	C>A	0.25	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44076	intergenic	intergenic	intergenic
A373R1	2L	5795502	C	A	GCT	C>A	GCT	C>A	0.182	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CG9171	intron	CG9171	FBgn0031738
A373R1	2L	6279231	G	T	TGG	G>T	CCA	C>A	0.2	mutect2,somaticsniper	intron_variant	MODIFIER	Ddr	intron	Ddr	FBgn0053531
A373R1	2L	9103414	C	T	ACT	C>T	ACT	C>T	0.2	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44482	intergenic	intergenic	intergenic
A373R1	2L	9335207	A	C	TAT	A>C	ATA	T>G	0.3	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Eaat1	intron	Eaat1	FBgn0026439
A373R1	2L	10077534	G	T	TGT	G>T	ACA	C>A	0.6	somaticsniper,strelka	intron_variant	MODIFIER	CG44153	intron	CG44153	FBgn0265002
A373R1	2L	10279197	G	A	TGG	G>A	CCA	C>T	0.214	varscan2,strelka	synonymous_variant	LOW	CG34043	exon	CG34043	FBgn0054043
A373R1	2L	10794905	C	T	GCC	C>T	GCC	C>T	0.13	varscan2,strelka	downstream_gene_variant	MODIFIER	CG31870	intron	CG31869	FBgn0051869
A373R1	2L	11142572	C	A	GCT	C>A	GCT	C>A	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	hgo	intron	Gyc32E	FBgn0010197
A373R1	2L	11606835	G	A	CGA	G>A	TCG	C>T	0.5	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	spag4	intron	kek2	FBgn0015400
A373R1	2L	12195124	C	A	TCT	C>A	TCT	C>A	0.13	mutect2,strelka	intron_variant	MODIFIER	aret	intron	bru1	FBgn0000114
A373R1	2L	12588976	G	C	CGA	G>C	TCG	C>G	0.545	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	nub	intron	nub	FBgn0085424
A373R1	2L	13927183	A	T	CAT	A>T	ATG	T>A	0.462	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG16886	intron	Ance-3	FBgn0032536
A373R1	2L	17455354	A	C	GAT	A>C	ATC	T>G	0.429	somaticsniper,strelka	missense_variant	MODERATE	SPH93	exon	SPH93	FBgn0032638
A373R1	2L	17535781	A	T	AAC	A>T	GTT	T>A	0.22	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG15145	intergenic	intergenic	intergenic
A373R1	2L	20835178	C	A	GCT	C>A	GCT	C>A	0.143	mutect2,strelka	missense_variant	MODERATE	Oseg5	exon_2	Oseg5	FBgn0032891
A373R1	2L	21622298	A	G	AAT	A>G	ATT	T>C	0.214	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG2201	intron	CG2201	FBgn0032955
A373R1	2L	21800273	T	C	TTA	T>C	TTA	T>C	0.2	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG31612	intergenic	intergenic	intergenic
A373R1	2L	22910246	G	T	GGT	G>T	ACC	C>A	0.312	somaticsniper,strelka	intergenic_region	MODIFIER	CG17715-lt	intergenic	intergenic	intergenic
A373R1	2R	331130	T	G	TTT	T>G	TTT	T>G	0.28	mutect2,somaticsniper	intergenic_region	MODIFIER	CHR_START-CG45781	intron	CG45781	FBgn0267428
A373R1	2R	1954670	T	C	TTT	T>C	TTT	T>C	0.143	mutect2,strelka	intron_variant	MODIFIER	CG17684	intron	CG17684	FBgn0263780
A373R1	2R	2724965	T	C	GTA	T>C	GTA	T>C	0.478	somaticsniper,strelka	intergenic_region	MODIFIER	MFS17-CG41378	intergenic	intergenic	intergenic
A373R1	2R	2724982	G	A	AGT	G>A	ACT	C>T	0.353	somaticsniper,strelka	intergenic_region	MODIFIER	MFS17-CG41378	intergenic	intergenic	intergenic
A373R1	2R	4777587	A	C	TAA	A>C	TTA	T>G	0.32	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43281	intergenic	intergenic	intergenic
A373R1	2R	4897470	C	T	TCA	C>T	TCA	C>T	0.238	somaticsniper,strelka	intron_variant	MODIFIER	CG44102	intron	CG44102	FBgn0264911
A373R1	2R	5306634	A	T	AAC	A>T	GTT	T>A	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	sxc	intergenic	intergenic	intergenic
A373R1	2R	5306640	T	A	TTA	T>A	TTA	T>A	0.364	somaticsniper,strelka	upstream_gene_variant	MODIFIER	sxc	intergenic	intergenic	intergenic
A373R1	2R	5421241	A	T	TAA	A>T	TTA	T>A	0.375	mutect2,somaticsniper	intron_variant	MODIFIER	laccase2	intron	laccase2	FBgn0259247
A373R1	2R	10563340	C	A	CCT	C>A	CCT	C>A	0.4	somaticsniper,strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
A373R1	2R	12173157	A	C	CAA	A>C	TTG	T>G	0.294	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Oda	intron	Oda	FBgn0014184
A373R1	2R	12319776	G	T	AGT	G>T	ACT	C>A	0.222	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13163	intergenic	intergenic	intergenic
A373R1	2R	13588212	T	G	TTC	T>G	TTC	T>G	0.417	somaticsniper,strelka	intron_variant	MODIFIER	CG6191	intron	CG45088	FBgn0266489
A373R1	2R	14070912	C	G	ACA	C>G	ACA	C>G	0.4	somaticsniper,strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
A373R1	2R	14119661	A	T	CAC	A>T	GTG	T>A	0.333	mutect2,strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
A373R1	2R	14520012	G	T	AGC	G>T	GCT	C>A	0.16	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cpr51A	intergenic	intergenic	intergenic
A373R1	2R	15642480	G	C	TGA	G>C	TCA	C>G	0.188	varscan2,somaticsniper	intron_variant	MODIFIER	CG42524	intron	CG42524	FBgn0260429
A373R1	2R	16245719	C	A	TCT	C>A	TCT	C>A	0.294	somaticsniper,strelka	upstream_gene_variant	MODIFIER	krimp	intron	CngA	FBgn0261612
A373R1	2R	17166247	G	C	CGG	G>C	CCG	C>G	0.4	somaticsniper,strelka	synonymous_variant	LOW	CG10953	exon	CG10953	FBgn0034204
A373R1	2R	19150354	T	C	TTT	T>C	TTT	T>C	0.125	mutect2,strelka	upstream_gene_variant	MODIFIER	ena	intron	ena	FBgn0000578
A373R1	2R	21213402	C	A	CCA	C>A	CCA	C>A	0.129	mutect2,strelka	missense_variant	MODERATE	CG4302	exon	CG4302	FBgn0027073
A373R1	2R	22278268	T	C	TTT	T>C	TTT	T>C	0.259	somaticsniper,strelka	intron_variant	MODIFIER	dve	intron	dve	FBgn0020307
A373R1	2R	23737156	C	A	TCC	C>A	TCC	C>A	0.167	mutect2,somaticsniper,strelka	missense_variant	MODERATE	egl	exon_4	egl	FBgn0000562
A373R1	2R	23793464	G	T	TGA	G>T	TCA	C>A	0.222	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15800	intron	CG9850	FBgn0034903
A373R1	2R	24227203	A	G	TAT	A>G	ATA	T>C	0.208	varscan2,somaticsniper	intron_variant	MODIFIER	CG30419	intron	CG30419	FBgn0050419
A373R1	3L	286310	G	A	TGC	G>A	GCA	C>T	0.333	mutect2,somaticsniper	intron_variant	MODIFIER	RhoGEF3	intron	RhoGEF3	FBgn0264707
A373R1	3L	604042	A	T	AAC	A>T	GTT	T>A	0.24	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG13893	intergenic	intergenic	intergenic
A373R1	3L	1188738	C	A	GCT	C>A	GCT	C>A	0.16	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13912	intergenic	intergenic	intergenic
A373R1	3L	1440123	A	G	GAA	A>G	TTC	T>C	0.235	somaticsniper,strelka	upstream_gene_variant	MODIFIER	SA-2	intron	Ptp61F	FBgn0267487
A373R1	3L	1862730	T	C	TTG	T>C	TTG	T>C	0.231	mutect2,strelka	upstream_gene_variant	MODIFIER	R	intergenic	intergenic	intergenic
A373R1	3L	2555998	T	C	ATA	T>C	ATA	T>C	0.294	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	msn	3UTR	msn	FBgn0010909
A373R1	3L	2555999	A	C	TAC	A>C	GTA	T>G	0.294	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	msn	3UTR	msn	FBgn0010909
A373R1	3L	2828529	C	T	TCC	C>T	TCC	C>T	0.308	varscan2,somaticsniper	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A373R1	3L	4656913	A	C	GAC	A>C	GTC	T>G	0.2	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45830	intron	axo	FBgn0262870
A373R1	3L	5077959	A	G	TAC	A>G	GTA	T>C	0.273	varscan2,strelka	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
A373R1	3L	5291964	T	C	CTA	T>C	CTA	T>C	0.273	varscan2,somaticsniper	intergenic_region	MODIFIER	shep-CR45741	intergenic	intergenic	intergenic
A373R1	3L	5414069	G	C	CGG	G>C	CCG	C>G	0.222	mutect2,somaticsniper	intergenic_region	MODIFIER	Ir64a-CG34391	intergenic	intergenic	intergenic
A373R1	3L	8845641	G	T	AGG	G>T	CCT	C>A	0.25	somaticsniper,strelka	intron_variant	MODIFIER	dally	ncRNA	CR45823	FBgn0267473
A373R1	3L	8845642	G	T	GGA	G>T	TCC	C>A	0.25	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	dally	ncRNA	CR45823	FBgn0267473
A373R1	3L	8845652	T	G	ATG	T>G	ATG	T>G	0.211	somaticsniper,strelka	intron_variant	MODIFIER	dally	ncRNA	CR45823	FBgn0267473
A373R1	3L	10905044	G	T	GGA	G>T	TCC	C>A	0.375	somaticsniper,strelka	intergenic_region	MODIFIER	Aps-CR45248	intergenic	intergenic	intergenic
A373R1	3L	11196314	T	A	CTT	T>A	CTT	T>A	0.444	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG7607	intron	GlcAT-P	FBgn0036144
A373R1	3L	13641692	C	A	CCG	C>A	CCG	C>A	0.211	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A373R1	3L	16474933	G	C	AGC	G>C	GCT	C>G	0.214	somaticsniper,strelka	intron_variant	MODIFIER	CG33158	intron	aos	FBgn0004569
A373R1	3L	19264100	A	T	AAG	A>T	CTT	T>A	0.35	varscan2,somaticsniper	splice_region_variant&intron_variant	LOW	CG9666	intron	CG9666	FBgn0036856
A373R1	3L	19444015	A	G	AAC	A>G	GTT	T>C	0.222	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR45732	intron	CG33062	FBgn0053062
A373R1	3L	19464395	C	G	ACG	C>G	ACG	C>G	0.267	varscan2,strelka	missense_variant	MODERATE	CG14095	exon	CG14095	FBgn0036870
A373R1	3L	19561482	G	A	GGA	G>A	TCC	C>T	0.273	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CR44677	intergenic	intergenic	intergenic
A373R1	3L	21736406	C	T	ACG	C>T	ACG	C>T	0.19	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14569	intergenic	intergenic	intergenic
A373R1	3L	25445989	C	T	GCT	C>T	GCT	C>T	0.154	somaticsniper,strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
A373R1	3L	26726573	C	G	CCG	C>G	CCG	C>G	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A373R1	3L	27131315	T	G	TTG	T>G	TTG	T>G	0.308	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45181	intergenic	intergenic	intergenic
A373R1	3R	232446	G	A	TGG	G>A	CCA	C>T	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A373R1	3R	232457	G	C	TGT	G>C	ACA	C>G	0.22	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A373R1	3R	232458	T	G	GTT	T>G	GTT	T>G	0.22	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A373R1	3R	8733279	T	C	TTG	T>C	TTG	T>C	0.111	mutect2,varscan2	missense_variant	MODERATE	CG8202	exon_5	CG8202	FBgn0037622
A373R1	3R	9818689	T	A	TTA	T>A	TTA	T>A	0.222	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44035	intergenic	intergenic	intergenic
A373R1	3R	13763582	A	G	TAG	A>G	CTA	T>C	0.2	mutect2,somaticsniper	3_prime_UTR_variant	MODIFIER	CG34383	3UTR	CG34383	FBgn0085412
A373R1	3R	15427451	T	G	GTG	T>G	GTG	T>G	0.156	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6118	intron	CG6118	FBgn0038339
A373R1	3R	16172381	G	T	GGG	G>T	CCC	C>A	0.174	somaticsniper,strelka	missense_variant	MODERATE	CG8925	exon_1	CG8925	FBgn0038404
A373R1	3R	17209751	G	T	AGC	G>T	GCT	C>A	0.238	somaticsniper,strelka	intergenic_region	MODIFIER	Mur89F-CG31262	intergenic	intergenic	intergenic
A373R1	3R	17919260	T	C	GTA	T>C	GTA	T>C	0.533	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	Rim	intergenic	intergenic	intergenic
A373R1	3R	18816141	C	T	GCG	C>T	GCG	C>T	0.389	somaticsniper,strelka	intron_variant	MODIFIER	CG18208	intron	CG18208	FBgn0038653
A373R1	3R	19953343	C	A	GCT	C>A	GCT	C>A	0.182	mutect2,varscan2	downstream_gene_variant	MODIFIER	CG4783	intron	Hs6st	FBgn0038755
A373R1	3R	20459357	A	C	TAG	A>C	CTA	T>G	0.615	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
A373R1	3R	21974584	T	C	CTT	T>C	CTT	T>C	0.182	somaticsniper,strelka	intron_variant	MODIFIER	Eip93F	intron	Eip93F	FBgn0264490
A373R1	3R	22655764	T	A	CTG	T>A	CTG	T>A	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	wake	intron	wake	FBgn0266418
A373R1	3R	25035920	C	A	GCG	C>A	GCG	C>A	0.136	mutect2,varscan2,strelka	missense_variant	MODERATE	CG6422	exon_8	CG6422	FBgn0039261
A373R1	3R	25136454	A	T	GAG	A>T	CTC	T>A	0.333	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	Bili	3UTR	Bili	FBgn0039282
A373R1	3R	25384050	C	A	CCA	C>A	CCA	C>A	0.174	mutect2,somaticsniper	missense_variant	MODERATE	CG31437	exon	CG31437	FBgn0051437
A373R1	3R	26399651	G	T	TGT	G>T	ACA	C>A	0.19	mutect2,varscan2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	ppk15	intergenic	intergenic	intergenic
A373R1	3R	27993113	T	C	CTC	T>C	CTC	T>C	0.444	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	betaTub97EF	intergenic	intergenic	intergenic
A373R1	3R	28164561	A	G	CAT	A>G	ATG	T>C	0.216	mutect2,somaticsniper	intron_variant	MODIFIER	CG34354	intron	CG34354	FBgn0085383
A373R1	3R	30788017	G	T	TGA	G>T	TCA	C>A	0.182	mutect2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	zfh1	3UTR	zfh1	FBgn0004606
A373R1	3R	31910559	A	G	GAG	A>G	CTC	T>C	0.158	mutect2,strelka	intron_variant	MODIFIER	heph	intron	heph	FBgn0011224
A373R1	X	371377	C	A	TCC	C>A	TCC	C>A	0.333	mutect2,strelka	downstream_gene_variant	MODIFIER	yar	intron	CG32816	FBgn0052816
A373R1	X	691230	G	A	CGA	G>A	TCG	C>T	0.438	mutect2,somaticsniper	intron_variant	MODIFIER	sdk	intron	sdk	FBgn0021764
A373R1	X	884155	A	T	CAA	A>T	TTG	T>A	0.4	mutect2,strelka	intron_variant	MODIFIER	CG43867	intron	CG43867	FBgn0264449
A373R1	X	1152978	G	T	GGA	G>T	TCC	C>A	0.176	mutect2,strelka	intergenic_region	MODIFIER	CG14628-eIF4E-7	intergenic	intergenic	intergenic
A373R1	X	2680777	A	G	AAC	A>G	GTT	T>C	0.25	varscan2,strelka	missense_variant	MODERATE	HLH3B	exon	HLH3B	FBgn0011276
A373R1	X	2854886	C	A	GCT	C>A	GCT	C>A	0.294	freebayes	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A373R1	X	3835572	C	A	GCA	C>A	GCA	C>A	0.143	mutect2,strelka	upstream_gene_variant	MODIFIER	ec	intron	ec	FBgn0000542
A373R1	X	7241742	G	A	TGT	G>A	ACA	C>T	0.294	freebayes	3_prime_UTR_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A373R1	X	8061182	C	G	GCC	C>G	GCC	C>G	0.333	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	mys	intron	fs(1)h	FBgn0004656
A373R1	X	8221229	G	T	GGA	G>T	TCC	C>A	0.222	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	sdt	intron	sdt	FBgn0261873
A373R1	X	9659269	G	A	CGG	G>A	CCG	C>T	0.944	mutect2,varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	CG3106	exon	CG3106	FBgn0030148
A373R1	X	9905539	T	A	TTA	T>A	TTA	T>A	0.308	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG1986	intergenic	intergenic	intergenic
A373R1	X	10209631	A	G	CAC	A>G	GTG	T>C	0.294	freebayes	5_prime_UTR_variant	MODIFIER	CG15309	exon_1	CG15309	FBgn0030183
A373R1	X	14303256	G	T	CGT	G>T	ACG	C>A	0.294	freebayes	intergenic_region	MODIFIER	CR44963-betaNACtes2	intergenic	intergenic	intergenic
A373R1	X	14380906	A	G	GAC	A>G	GTC	T>C	0.3	somaticsniper,strelka	missense_variant	MODERATE	betaNACtes4	exon	betaNACtes4	FBgn0030566
A373R1	X	14982171	C	A	TCC	C>A	TCC	C>A	0.111	mutect2,strelka	intron_variant	MODIFIER	eag	intron	eag	FBgn0000535
A373R1	X	15507803	G	T	CGC	G>T	GCG	C>A	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	mir-283	intron	Gmap	FBgn0027287
A373R1	X	15546046	G	T	CGA	G>T	TCG	C>A	0.25	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CR44354	intron	Ac13E	FBgn0022710
A373R1	X	15548207	C	A	TCA	C>A	TCA	C>A	0.444	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44353	intron	Ac13E	FBgn0022710
A373R1	X	15698364	G	T	TGA	G>T	TCA	C>A	0.273	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG8128	5UTR	CG8128	FBgn0030668
A373R1	X	16788550	C	A	TCT	C>A	TCT	C>A	0.286	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG9609	intron	Sap30	FBgn0030788
A373R1	X	16820912	G	T	AGA	G>T	TCT	C>A	0.4	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44129	intron	CG4829	FBgn0030796
A373R1	X	17710002	G	T	CGA	G>T	TCG	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG8173	intergenic	intergenic	intergenic
A373R1	X	18287895	G	T	TGA	G>T	TCA	C>A	0.2	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR15061	intergenic	intergenic	intergenic
A373R1	X	18385782	T	C	ATT	T>C	ATT	T>C	0.375	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	betaCOP	intergenic	intergenic	intergenic
A373R1	X	18445663	C	A	GCT	C>A	GCT	C>A	0.231	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG32547	exon	CG32547	FBgn0052547
A373R1	X	19594995	T	G	TTT	T>G	TTT	T>G	0.25	mutect2,somaticsniper,strelka	synonymous_variant	LOW	CG14205	exon_8	CG14205	FBgn0031034
A373R1	X	19861359	C	A	CCA	C>A	CCA	C>A	0.211	mutect2,somaticsniper,strelka	synonymous_variant	LOW	CG15618	exon_6	CG15618	FBgn0031077
A373R1	X	21179514	G	T	AGC	G>T	GCT	C>A	0.3	mutect2,varscan2,somaticsniper,strelka	intergenic_region	MODIFIER	CR32511-CR45506	intergenic	intergenic	intergenic
A373R1	X	22785755	C	A	GCC	C>A	GCC	C>A	0.3	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CR44997	ncRNA	CR44997	FBgn0266348
A373R3	2L	502027	A	T	GAT	A>T	ATC	T>A	0.292	varscan2,somaticsniper	intron_variant	MODIFIER	ush	exon_1	CR46259	FBgn0267992
A373R3	2L	1238728	G	C	AGC	G>C	GCT	C>G	0.24	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5397	intergenic	intergenic	intergenic
A373R3	2L	5715433	T	G	GTT	T>G	GTT	T>G	0.182	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG14007	3UTR	CG14007	FBgn0031731
A373R3	2L	6799328	A	C	TAT	A>C	ATA	T>G	0.25	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	nrv2	ncRNA	CR43610	FBgn0263585
A373R3	2L	7021570	T	C	ATG	T>C	ATG	T>C	0.175	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Pcp	intron	ade3	FBgn0000053
A373R3	2L	9173862	C	A	ACA	C>A	ACA	C>A	0.357	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	tai	intron	tai	FBgn0041092
A373R3	2L	9874728	G	C	TGT	G>C	ACA	C>G	0.222	somaticsniper,strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
A373R3	2L	10724761	T	A	TTT	T>A	TTT	T>A	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6443	intron	CG6431	FBgn0032289
A373R3	2L	13554896	G	A	CGA	G>A	TCG	C>T	0.235	somaticsniper,strelka	intron_variant	MODIFIER	kuz	intron	kuz	FBgn0259984
A373R3	2L	17790567	T	C	ATA	T>C	ATA	T>C	0.346	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43419	intron	CadN2	FBgn0262018
A373R3	2L	18528346	T	A	CTG	T>A	CTG	T>A	0.242	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CR44903	intron	CG10211	FBgn0032685
A373R3	2L	20591685	G	A	AGA	G>A	TCT	C>T	0.176	varscan2,somaticsniper	intron_variant	MODIFIER	CR44909	ncRNA	CR44909	FBgn0266214
A373R3	2L	22213349	G	A	AGG	G>A	CCT	C>T	0.407	mutect2,varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	Ir40a	exon_3	Ir40a	FBgn0259683
A373R3	2R	8154135	C	T	ACG	C>T	ACG	C>T	0.229	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44068	intron	kermit	FBgn0010504
A373R3	2R	8627688	A	T	AAT	A>T	ATT	T>A	0.217	somaticsniper,strelka	upstream_gene_variant	MODIFIER	beta3GalTII	intergenic	intergenic	intergenic
A373R3	2R	8796766	T	A	TTC	T>A	TTC	T>A	0.526	varscan2,strelka	upstream_gene_variant	MODIFIER	sns	intergenic	intergenic	intergenic
A373R3	2R	9870324	T	A	GTG	T>A	GTG	T>A	0.312	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	cbx	exon_1	cbx	FBgn0011241
A373R3	2R	11041872	C	G	TCG	C>G	TCG	C>G	0.333	varscan2,somaticsniper	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
A373R3	2R	11373538	C	A	CCA	C>A	CCA	C>A	0.0755	varscan2,strelka	upstream_gene_variant	MODIFIER	Tapdelta	intergenic	intergenic	intergenic
A373R3	2R	13568318	T	C	TTC	T>C	TTC	T>C	0.308	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG42807	intergenic	intergenic	intergenic
A373R3	2R	16360746	C	T	TCA	C>T	TCA	C>T	0.422	mutect2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	CG6262	exon_3	CG6262	FBgn0034121
A373R3	2R	20440749	A	T	TAT	A>T	ATA	T>A	0.2	somaticsniper,strelka	intron_variant	MODIFIER	CG12484	intron	CG12484	FBgn0086604
A373R3	2R	20759554	T	A	TTG	T>A	TTG	T>A	0.224	varscan2,somaticsniper	intergenic_region	MODIFIER	CG34202-CR44665	intergenic	intergenic	intergenic
A373R3	2R	22213843	G	A	CGA	G>A	TCG	C>T	0.212	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3264	intron	ari-2	FBgn0025186
A373R3	2R	23006049	A	C	CAC	A>C	GTG	T>G	0.286	varscan2,somaticsniper	intron_variant	MODIFIER	twi	intron	twi	FBgn0003900
A373R3	2R	23825550	C	A	ACG	C>A	ACG	C>A	0.173	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG4763	intron	CG5549	FBgn0034911
A373R3	2R	24221695	G	T	GGA	G>T	TCC	C>A	0.15	varscan2,somaticsniper	intron_variant	MODIFIER	CG30419	intron	CG30419	FBgn0050419
A373R3	3L	3802483	G	A	GGC	G>A	GCC	C>T	0.136	mutect2,strelka	upstream_gene_variant	MODIFIER	IntS10	intron	CG32264	FBgn0052264
A373R3	3L	5217215	A	G	CAA	A>G	TTG	T>C	0.2	varscan2,somaticsniper	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
A373R3	3L	9017711	T	C	CTA	T>C	CTA	T>C	0.375	varscan2,somaticsniper	intron_variant	MODIFIER	Doc2	intron	Doc2	FBgn0035956
A373R3	3L	11318406	T	C	CTA	T>C	CTA	T>C	0.312	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR44361	intergenic	intergenic	intergenic
A373R3	3L	12691940	A	G	GAT	A>G	ATC	T>C	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	mirr	intergenic	intergenic	intergenic
A373R3	3L	18313354	G	T	GGC	G>T	GCC	C>A	0.375	mutect2,somaticsniper	intergenic_region	MODIFIER	grim-rpr	intergenic	intergenic	intergenic
A373R3	3R	1393409	G	A	GGG	G>A	CCC	C>T	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R3	3R	10685367	C	T	TCT	C>T	TCT	C>T	0.258	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14688	intergenic	intergenic	intergenic
A373R3	3R	11291330	T	G	TTT	T>G	TTT	T>G	0.211	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	CR31386	ncRNA	CR31386	FBgn0051386
A373R3	3R	12283470	C	G	ACA	C>G	ACA	C>G	0.159	varscan2,somaticsniper	intron_variant	MODIFIER	svp	intron	svp	FBgn0003651
A373R3	3R	18191466	C	G	ACA	C>G	ACA	C>G	0.208	varscan2,somaticsniper	splice_region_variant&intron_variant	LOW	CG14313	intron	CG14313	FBgn0038579
A373R3	3R	21179673	G	A	GGT	G>A	ACC	C>T	0.184	somaticsniper,strelka	upstream_gene_variant	MODIFIER	SNF4Agamma	intron	SNF4Agamma	FBgn0264357
A373R3	3R	22594715	A	G	CAC	A>G	GTG	T>C	0.174	varscan2,somaticsniper	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
A373R3	3R	22594720	T	C	ATA	T>C	ATA	T>C	0.154	varscan2,somaticsniper	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
A373R3	3R	26476480	A	G	AAT	A>G	ATT	T>C	0.158	varscan2,somaticsniper	intron_variant	MODIFIER	plum	intron	plum	FBgn0039431
A373R3	3R	28068004	C	T	TCT	C>T	TCT	C>T	0.243	varscan2,somaticsniper	intron_variant	MODIFIER	CG34362	intron	CG34362	FBgn0085391
A373R3	3R	29329225	C	A	TCG	C>A	TCG	C>A	0.273	varscan2,somaticsniper	intergenic_region	MODIFIER	Cnx99A-CR45547	intergenic	intergenic	intergenic
A373R3	X	2790705	G	A	AGC	G>A	GCT	C>T	0.111	mutect2,strelka	3_prime_UTR_variant	MODIFIER	w	3UTR	w	FBgn0003996
A373R3	X	3779323	C	A	TCT	C>A	TCT	C>A	0.235	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
A373R3	X	8878400	G	A	AGA	G>A	TCT	C>T	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Moe	intron	Moe	FBgn0011661
A373R3	X	10401805	A	G	TAG	A>G	CTA	T>C	0.368	varscan2,somaticsniper	intron_variant	MODIFIER	flw	intron	flw	FBgn0000711
A373R3	X	10401807	T	G	GTT	T>G	GTT	T>G	0.316	varscan2,somaticsniper	intron_variant	MODIFIER	flw	intron	flw	FBgn0000711
A373R5	2L	960850	G	A	AGA	G>A	TCT	C>T	0.158	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG4341	intergenic	intergenic	intergenic
A373R5	2L	1615465	C	A	ACA	C>A	ACA	C>A	0.19	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31935	intergenic	intergenic	intergenic
A373R5	2L	12225515	T	G	ATT	T>G	ATT	T>G	0.2	somaticsniper,strelka	intron_variant	MODIFIER	aret	intron	bru1	FBgn0000114
A373R5	2L	14387869	C	G	TCG	C>G	TCG	C>G	0.222	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	elB	intergenic	intergenic	intergenic
A373R5	2L	15334684	C	G	TCC	C>G	TCC	C>G	0.278	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	esg	exon	esg	FBgn0001981
A373R5	2L	16853109	A	C	AAG	A>C	CTT	T>G	0.194	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31810	intergenic	intergenic	intergenic
A373R5	2L	19648070	G	C	TGT	G>C	ACA	C>G	0.368	somaticsniper,strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
A373R5	2L	20909431	C	A	GCA	C>A	GCA	C>A	0.35	somaticsniper,strelka	intron_variant	MODIFIER	sky	intron	sky	FBgn0032901
A373R5	2R	13028350	C	T	CCA	C>T	CCA	C>T	0.28	varscan2,somaticsniper	intergenic_region	MODIFIER	Su(z)2-CG13323	intergenic	intergenic	intergenic
A373R5	2R	13028355	G	A	CGT	G>A	ACG	C>T	0.292	varscan2,somaticsniper	intergenic_region	MODIFIER	Su(z)2-CG13323	intergenic	intergenic	intergenic
A373R5	2R	13342972	T	C	GTG	T>C	GTG	T>C	0.154	varscan2,somaticsniper	intron_variant	MODIFIER	CR44206	ncRNA	CR44206	FBgn0265104
A373R5	2R	14042259	T	C	ATT	T>C	ATT	T>C	0.136	mutect2,strelka	intron_variant	MODIFIER	mam	intron	mam	FBgn0002643
A373R5	2R	15605866	T	C	GTG	T>C	GTG	T>C	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	CG8204-CG42524	intergenic	intergenic	intergenic
A373R5	2R	17175758	T	G	TTT	T>G	TTT	T>G	0.0811	mutect2,varscan2	intergenic_region	MODIFIER	CG10953-CR44387	intergenic	intergenic	intergenic
A373R5	2R	20605932	C	A	ACA	C>A	ACA	C>A	0.273	somaticsniper,strelka	splice_region_variant	LOW	bl	3UTR	HnRNP-K	FBgn0267791
A373R5	2R	21962291	G	C	CGT	G>C	ACG	C>G	0.225	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ppk9	intergenic	intergenic	intergenic
A373R5	3L	1686836	G	T	TGC	G>T	GCA	C>A	0.242	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG7991	intron	CG7991	FBgn0035260
A373R5	3L	1942626	C	A	CCC	C>A	CCC	C>A	0.312	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	Mfap1	exon	Mfap1	FBgn0035294
A373R5	3L	2221376	C	T	TCT	C>T	TCT	C>T	0.282	somaticsniper,strelka	intergenic_region	MODIFIER	CG15878-Oseg2	intergenic	intergenic	intergenic
A373R5	3L	3796728	G	T	CGG	G>T	CCG	C>A	0.205	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG32264	intron	CG32264	FBgn0052264
A373R5	3L	4565597	A	C	AAT	A>C	ATT	T>G	0.308	somaticsniper,strelka	intron_variant	MODIFIER	CG42540	intron	CG42540	FBgn0260657
A373R5	3L	5572199	A	G	CAG	A>G	CTG	T>C	0.162	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	snmRNA:357	intron	Msr-110	FBgn0015766
A373R5	3L	5965063	C	A	TCC	C>A	TCC	C>A	0.157	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG10479	intergenic	intergenic	intergenic
A373R5	3L	8553132	C	G	TCT	C>G	TCT	C>G	0.0566	mutect2,strelka	upstream_gene_variant	MODIFIER	rhea	intron	rhea	FBgn0260442
A373R5	3L	8689100	T	G	GTT	T>G	GTT	T>G	0.216	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44526	intergenic	intergenic	intergenic
A373R5	3L	9916049	T	C	TTT	T>C	TTT	T>C	0.158	varscan2,somaticsniper	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
A373R5	3L	10700825	G	A	CGC	G>A	GCG	C>T	0.225	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	NijA	intergenic	intergenic	intergenic
A373R5	3L	16539743	A	T	TAT	A>T	ATA	T>A	0.207	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG13033	intron	CG43373	FBgn0263131
A373R5	3L	20491397	T	A	TTC	T>A	TTC	T>A	0.206	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6020	intron	ZnT77C	FBgn0037000
A373R5	3L	21776723	G	A	GGG	G>A	CCC	C>T	0.333	somaticsniper,strelka	non_coding_transcript_exon_variant	MODIFIER	CR45958	ncRNA	CR45958	FBgn0267620
A373R5	3R	7444194	C	T	GCC	C>T	GCC	C>T	0.0833	mutect2,strelka	downstream_gene_variant	MODIFIER	CG14598	intergenic	intergenic	intergenic
A373R5	3R	8167712	C	T	TCA	C>T	TCA	C>T	0.231	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	grn	intron	grn	FBgn0001138
A373R5	3R	8167715	C	T	TCA	C>T	TCA	C>T	0.231	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	grn	intron	grn	FBgn0001138
A373R5	3R	10108158	C	T	GCA	C>T	GCA	C>T	0.19	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3940	intron	Fmr1	FBgn0028734
A373R5	3R	10108159	A	G	CAT	A>G	ATG	T>C	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3940	intron	Fmr1	FBgn0028734
A373R5	3R	14038026	A	T	AAA	A>T	TTT	T>A	0.174	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9922	intergenic	intergenic	intergenic
A373R5	3R	14095361	C	A	TCA	C>A	TCA	C>A	0.185	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Npc2b	intron	CCHa1	FBgn0038199
A373R5	3R	15141956	C	A	GCT	C>A	GCT	C>A	0.154	mutect2,varscan2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	GlyS	3UTR	GlyS	FBgn0266064
A373R5	3R	16117305	T	G	ATG	T>G	ATG	T>G	0.05	mutect2,strelka	intron_variant	MODIFIER	Sb	intron	Sb	FBgn0003319
A373R5	3R	17064603	G	C	TGT	G>C	ACA	C>G	0.171	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	Dad	intron	Dad	FBgn0020493
A373R5	3R	20673240	A	T	CAT	A>T	ATG	T>A	0.316	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45024	intergenic	intergenic	intergenic
A373R5	3R	21290288	G	A	GGC	G>A	GCC	C>T	0.203	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	SIFaR	intron	SIFaR	FBgn0038880
A373R5	3R	22925986	A	G	CAT	A>G	ATG	T>C	0.206	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR46088	intron	klg	FBgn0017590
A373R5	3R	24709994	T	C	ATG	T>C	ATG	T>C	0.209	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	slo	3UTR	slo	FBgn0003429
A373R5	3R	25314646	A	C	TAT	A>C	ATA	T>G	0.333	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG10559	3UTR	CG10559	FBgn0039323
A373R5	3R	26619387	A	C	GAG	A>C	CTC	T>G	0.216	somaticsniper,strelka	synonymous_variant	LOW	TwdlM	exon	TwdlM	FBgn0039434
A373R5	3R	26619402	A	C	GAG	A>C	CTC	T>G	0.273	somaticsniper,strelka	synonymous_variant	LOW	TwdlM	exon	TwdlM	FBgn0039434
A373R5	3R	26676436	G	C	AGC	G>C	GCT	C>G	0.259	varscan2,somaticsniper	intron_variant	MODIFIER	beat-VII	intron	beat-VII	FBgn0250908
A373R5	3R	28302079	G	A	AGG	G>A	CCT	C>T	0.222	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR46103	intergenic	intergenic	intergenic
A373R5	3R	28302089	G	A	GGC	G>A	GCC	C>T	0.286	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR46103	intergenic	intergenic	intergenic
A373R5	3R	28302111	G	T	CGA	G>T	TCG	C>A	0.308	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR46103	intergenic	intergenic	intergenic
A373R5	X	3317161	T	C	TTG	T>C	TTG	T>C	0.214	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG10793	ncRNA	CR44886	FBgn0266180
A373R5	X	4050673	C	T	CCC	C>T	CCC	C>T	0.364	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR45482	intergenic	intergenic	intergenic
A373R5	X	7298275	A	G	TAT	A>G	ATA	T>C	0.6	somaticsniper,strelka	intron_variant	MODIFIER	CR44357	intron	CG1677	FBgn0029941
A373R5	X	19776493	G	A	GGC	G>A	GCC	C>T	0.286	mutect2,strelka	3_prime_UTR_variant	MODIFIER	vfl	3UTR	zld	FBgn0259789
A373R7	2L	334421	G	T	GGA	G>T	TCC	C>A	0.375	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43755	intron	Plc21C	FBgn0004611
A373R7	2L	429841	T	A	TTA	T>A	TTA	T>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ex	intergenic	intergenic	intergenic
A373R7	2L	477382	C	A	TCC	C>A	TCC	C>A	0.667	somaticsniper,strelka	stop_gained	HIGH	cbt	exon	cbt	FBgn0043364
A373R7	2L	866105	C	A	CCC	C>A	CCC	C>A	0.5	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	aru	intron	aru	FBgn0029095
A373R7	2L	887933	G	T	TGC	G>T	GCA	C>A	0.571	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15824	intergenic	intergenic	intergenic
A373R7	2L	922918	C	A	GCT	C>A	GCT	C>A	0.4	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG4341	exon_1	CG4341	FBgn0028481
A373R7	2L	1115883	C	A	GCC	C>A	GCC	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	Pino	exon	Pino	FBgn0016926
A373R7	2L	1337311	A	C	CAA	A>C	TTG	T>G	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG5440	intergenic	intergenic	intergenic
A373R7	2L	1473858	C	A	ACA	C>A	ACA	C>A	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CG43402-CG31928	intergenic	intergenic	intergenic
A373R7	2L	2184222	C	A	CCA	C>A	CCA	C>A	0.25	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	tRNA:CR31946	exon_1	CR43751	FBgn0265017
A373R7	2L	2203462	C	G	CCC	C>G	CCC	C>G	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG31668	intergenic	intergenic	intergenic
A373R7	2L	2415698	C	A	TCA	C>A	TCA	C>A	0.25	somaticsniper,strelka	synonymous_variant	LOW	CG31948	exon	CG31948	FBgn0051948
A373R7	2L	2576029	T	A	ATC	T>A	ATC	T>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	insv	exon	insv	FBgn0031434
A373R7	2L	2576817	G	T	TGT	G>T	ACA	C>A	0.667	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	insv	5UTR	insv	FBgn0031434
A373R7	2L	2870768	G	T	CGT	G>T	ACG	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG31694	exon_3	CG31694	FBgn0051694
A373R7	2L	3298123	C	A	CCT	C>A	CCT	C>A	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	CG9664	intron	CG9663	FBgn0031516
A373R7	2L	3726589	C	A	CCG	C>A	CCG	C>A	0.4	mutect2,strelka	upstream_gene_variant	MODIFIER	CG10019	intron	Shaw	FBgn0003386
A373R7	2L	4465485	T	A	GTT	T>A	GTT	T>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG17840	exon_2	FIG4	FBgn0031611
A373R7	2L	4577481	C	A	ACT	C>A	ACT	C>A	0.375	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	HP6	intron	dpy	FBgn0053196
A373R7	2L	4870379	T	C	TTC	T>C	TTC	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	pog	intron	smog	FBgn0051660
A373R7	2L	5023430	G	T	AGC	G>T	GCT	C>A	0.214	mutect2,strelka	intron_variant	MODIFIER	vkg	intron	vkg	FBgn0016075
A373R7	2L	5033150	G	T	GGC	G>T	GCC	C>A	0.667	mutect2,strelka	missense_variant	MODERATE	Cg25C	exon_6	Col4a1	FBgn0000299
A373R7	2L	5079493	T	G	CTC	T>G	CTC	T>G	0.667	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	pgant5	5UTR	pgant5	FBgn0031681
A373R7	2L	5092498	C	T	ACT	C>T	ACT	C>T	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5828	intron	pgant5	FBgn0031681
A373R7	2L	5112121	G	A	TGC	G>A	GCA	C>T	0.333	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Msp300	intron	Msp300	FBgn0261836
A373R7	2L	5128027	C	A	ACC	C>A	ACC	C>A	0.5	mutect2,somaticsniper,strelka	missense_variant	MODERATE	Msp300	exon_7	Msp300	FBgn0261836
A373R7	2L	5322838	C	T	CCG	C>T	CCG	C>T	0.667	somaticsniper,strelka	synonymous_variant	LOW	Ncoa6	exon_4	Ncoa6	FBgn0031698
A373R7	2L	6566115	C	A	CCA	C>A	CCA	C>A	0.273	mutect2,varscan2,somaticsniper,strelka	start_lost	HIGH	CG13766	start_codon	CG13766	FBgn0031834
A373R7	2L	6617547	T	C	GTC	T>C	GTC	T>C	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG11320	exon_4	DIP-iota	FBgn0031837
A373R7	2L	7017926	C	A	CCG	C>A	CCG	C>A	0.333	mutect2,strelka	stop_gained	HIGH	ade3	exon_5	ade3	FBgn0000053
A373R7	2L	7261566	A	T	AAT	A>T	ATT	T>A	0.4	mutect2,strelka	downstream_gene_variant	MODIFIER	CG31909	intron	Wnt4	FBgn0010453
A373R7	2L	7383573	G	A	CGG	G>A	CCG	C>T	0.667	somaticsniper,strelka	missense_variant	MODERATE	ninaC	exon_13	ninaC	FBgn0002938
A373R7	2L	7439526	C	T	TCT	C>T	TCT	C>T	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5973	intron	CG5973	FBgn0031914
A373R7	2L	8137524	C	T	CCC	C>T	CCC	C>T	0.429	mutect2,somaticsniper	missense_variant	MODERATE	CG8552	5UTR	PAPLA1	FBgn0031990
A373R7	2L	8684415	C	A	GCC	C>A	GCC	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9287	intergenic	intergenic	intergenic
A373R7	2L	9244301	A	T	CAA	A>T	TTG	T>A	0.364	mutect2,somaticsniper	missense_variant	MODERATE	tai	exon_13	tai	FBgn0041092
A373R7	2L	9529518	T	A	TTA	T>A	TTA	T>A	0.6	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG31883	3UTR	CG31883	FBgn0032122
A373R7	2L	9633181	G	T	CGC	G>T	GCG	C>A	0.444	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Apoltp	intergenic	intergenic	intergenic
A373R7	2L	9656620	C	A	GCC	C>A	GCC	C>A	0.333	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG33299	5UTR	CG33299	FBgn0053299
A373R7	2L	9951716	G	C	CGG	G>C	CCG	C>G	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5853	intergenic	intergenic	intergenic
A373R7	2L	10263535	T	C	ATC	T>C	ATC	T>C	0.667	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Rsf1	5UTR	Rsf1	FBgn0011305
A373R7	2L	10554508	A	G	AAA	A>G	TTT	T>C	0.3	somaticsniper,strelka	intron_variant	MODIFIER	Trim9	intron	Trim9	FBgn0051721
A373R7	2L	11079785	C	A	TCG	C>A	TCG	C>A	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45725	intron	AstC	FBgn0032336
A373R7	2L	12237532	G	T	CGA	G>T	TCG	C>A	0.571	somaticsniper,strelka	intron_variant	MODIFIER	aret	intron	bru1	FBgn0000114
A373R7	2L	12436239	C	A	TCT	C>A	TCT	C>A	0.6	mutect2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	SC35	intron	Elf	FBgn0020443
A373R7	2L	12754750	C	A	GCT	C>A	GCT	C>A	0.286	mutect2,strelka	intergenic_region	MODIFIER	MRP-CG15483	intron	MRP	FBgn0032456
A373R7	2L	12906756	C	A	CCG	C>A	CCG	C>A	0.308	mutect2,somaticsniper,strelka	intergenic_region	MODIFIER	CR44971-ACXC	intergenic	intergenic	intergenic
A373R7	2L	13028571	C	T	TCA	C>T	TCA	C>T	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG9932	intron	CG9932	FBgn0262160
A373R7	2L	13379460	T	C	TTC	T>C	TTC	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9302	intron	beta'COP	FBgn0025724
A373R7	2L	13613507	G	A	GGT	G>A	ACC	C>T	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	mir-2489	intron	kuz	FBgn0259984
A373R7	2L	13832961	C	A	TCT	C>A	TCT	C>A	0.429	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG33649	exon	GatC	FBgn0064115
A373R7	2L	14110187	G	T	GGA	G>T	TCC	C>A	0.3	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG31769	exon	CG31769	FBgn0051769
A373R7	2L	14338311	C	A	GCT	C>A	GCT	C>A	0.667	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG15286	5UTR	CG15286	FBgn0028531
A373R7	2L	15832362	A	G	AAA	A>G	TTT	T>C	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45368	intergenic	intergenic	intergenic
A373R7	2L	16404920	A	G	TAT	A>G	ATA	T>C	0.375	somaticsniper,strelka	intron_variant	MODIFIER	CG5888	intron	CG5888	FBgn0028523
A373R7	2L	16541123	T	C	TTC	T>C	TTC	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31816	intergenic	intergenic	intergenic
A373R7	2L	16610475	G	T	GGG	G>T	CCC	C>A	0.333	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG31815	intron	CG42389	FBgn0259735
A373R7	2L	16687887	C	A	GCA	C>A	GCA	C>A	0.444	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31807	intron	grp	FBgn0261278
A373R7	2L	16747042	A	G	AAG	A>G	CTT	T>C	1.0	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG17912	3UTR	BuGZ	FBgn0032600
A373R7	2L	17624020	C	A	TCT	C>A	TCT	C>A	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43054	intergenic	intergenic	intergenic
A373R7	2L	17678273	C	G	GCT	C>G	GCT	C>G	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CadN	intron	CadN	FBgn0015609
A373R7	2L	18091426	G	T	GGC	G>T	GCC	C>A	0.214	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG31741	intron	CG15153	FBgn0032663
A373R7	2L	18355584	C	T	TCC	C>T	TCC	C>T	0.25	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Acp36DE	intron	Fas3	FBgn0000636
A373R7	2L	18355585	C	G	CCC	C>G	CCC	C>G	0.25	varscan2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	Acp36DE	intron	Fas3	FBgn0000636
A373R7	2L	18895008	C	A	CCG	C>A	CCG	C>A	0.273	mutect2,somaticsniper	downstream_gene_variant	MODIFIER	CR44739	exon_1	CR44737	FBgn0265950
A373R7	2L	19465332	G	T	CGC	G>T	GCG	C>A	0.667	mutect2,strelka	missense_variant	MODERATE	tj	exon	tj	FBgn0000964
A373R7	2L	19532306	C	A	CCT	C>A	CCT	C>A	0.375	somaticsniper,strelka	missense_variant	MODERATE	CG10137	exon_6	CG10137	FBgn0032800
A373R7	2L	20373403	G	T	GGA	G>T	TCC	C>A	0.333	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG16798	intron	Ugt37a1	FBgn0026756
A373R7	2L	20499889	A	G	AAT	A>G	ATT	T>C	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG34007	intergenic	intergenic	intergenic
A373R7	2L	20716908	T	C	TTA	T>C	TTA	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Hr38	intergenic	intergenic	intergenic
A373R7	2L	21575679	T	C	ATA	T>C	ATA	T>C	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR42545	intron	Lamp1	FBgn0032949
A373R7	2L	22262853	G	T	CGT	G>T	ACG	C>A	0.286	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Tif-IA	intergenic	intergenic	intergenic
A373R7	2L	22571686	A	G	GAA	A>G	TTC	T>C	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CG17493-Slmap	intergenic	intergenic	intergenic
A373R7	2L	22663708	T	C	ATT	T>C	ATT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
A373R7	2R	1111078	A	C	AAC	A>C	GTT	T>G	0.5	somaticsniper,strelka	intron_variant	MODIFIER	rl	intron	rl	FBgn0003256
A373R7	2R	4298439	T	C	GTG	T>C	GTG	T>C	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	IntS3-Gprk1	intergenic	intergenic	intergenic
A373R7	2R	4563878	G	T	TGG	G>T	CCA	C>A	0.571	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Stlk	intron	Stlk	FBgn0046692
A373R7	2R	4724061	C	A	ACA	C>A	ACA	C>A	0.5	mutect2,strelka	intron_variant	MODIFIER	Nipped-B	intron	Nipped-B	FBgn0026401
A373R7	2R	4875409	C	T	GCC	C>T	GCC	C>T	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CG14464-CG44102	intergenic	intergenic	intergenic
A373R7	2R	4875799	C	A	GCA	C>A	GCA	C>A	0.667	mutect2,strelka	intergenic_region	MODIFIER	CG14464-CG44102	intergenic	intergenic	intergenic
A373R7	2R	5090366	T	A	TTG	T>A	TTG	T>A	0.375	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3107	intergenic	intergenic	intergenic
A373R7	2R	5129062	G	T	CGA	G>T	TCG	C>A	0.4	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	gus	exon_3	CR43256	FBgn0262901
A373R7	2R	5425027	C	A	CCT	C>A	CCT	C>A	0.25	somaticsniper,strelka	intron_variant	MODIFIER	laccase2	intron	laccase2	FBgn0259247
A373R7	2R	5482311	G	T	TGT	G>T	ACA	C>A	0.273	somaticsniper,strelka	intron_variant	MODIFIER	CG30440	intron	CG30440	FBgn0050440
A373R7	2R	6059954	G	T	TGC	G>T	GCA	C>A	0.429	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG7856	intron	CCHa2-R	FBgn0033058
A373R7	2R	6965215	G	T	GGG	G>T	CCC	C>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	mim	intron	CheB42c	FBgn0066292
A373R7	2R	7295484	G	A	CGT	G>A	ACG	C>T	0.333	mutect2,strelka	intron_variant	MODIFIER	pwn	intron	pwn	FBgn0003174
A373R7	2R	7307325	G	T	CGG	G>T	CCG	C>A	0.286	mutect2,strelka	upstream_gene_variant	MODIFIER	CG12164	intergenic	intergenic	intergenic
A373R7	2R	7390684	A	C	AAT	A>C	ATT	T>G	0.364	mutect2,somaticsniper	missense_variant	MODERATE	CG11107	exon	Dhx15	FBgn0033160
A373R7	2R	7390691	T	A	GTG	T>A	GTG	T>A	0.4	mutect2,somaticsniper	missense_variant	MODERATE	CG11107	exon	Dhx15	FBgn0033160
A373R7	2R	7402462	A	G	AAA	A>G	TTT	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43123	intron	Eaf	FBgn0033166
A373R7	2R	7559415	C	A	CCC	C>A	CCC	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	Corin	exon_8	Corin	FBgn0033192
A373R7	2R	7849863	G	T	TGG	G>T	CCA	C>A	0.5	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Dgk	intron	Dgk	FBgn0085390
A373R7	2R	7855179	C	A	GCC	C>A	GCC	C>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Dgk	intron	Dgk	FBgn0085390
A373R7	2R	8186666	G	T	CGG	G>T	CCG	C>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	LRP1	intron	LRP1	FBgn0053087
A373R7	2R	8391313	G	A	CGG	G>A	CCG	C>T	0.667	somaticsniper,strelka	missense_variant	MODERATE	pdm3	exon_4	pdm3	FBgn0261588
A373R7	2R	8488424	G	T	TGG	G>T	CCA	C>A	0.444	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	mtt	intron	mtt	FBgn0050361
A373R7	2R	9538596	C	A	ACT	C>A	ACT	C>A	0.273	mutect2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	brp	3UTR	brp	FBgn0259246
A373R7	2R	9613396	C	A	CCG	C>A	CCG	C>A	0.4	mutect2,strelka	missense_variant	MODERATE	Mmp2	exon_6	Mmp2	FBgn0033438
A373R7	2R	10680898	A	G	CAC	A>G	GTG	T>C	0.4	mutect2,strelka	intron_variant	MODIFIER	stan	intron	stan	FBgn0024836
A373R7	2R	10841229	G	A	TGT	G>A	ACA	C>T	0.667	somaticsniper,strelka	synonymous_variant	LOW	CG30015	exon	CG30015	FBgn0050015
A373R7	2R	11170504	A	G	AAA	A>G	TTT	T>C	0.3	somaticsniper,strelka	upstream_gene_variant	MODIFIER	shn	intron	shn	FBgn0003396
A373R7	2R	11209669	G	T	GGC	G>T	GCC	C>A	0.5	mutect2,somaticsniper,strelka	missense_variant	MODERATE	shn	exon_3	shn	FBgn0003396
A373R7	2R	11510332	G	T	GGG	G>T	CCC	C>A	0.3	somaticsniper,strelka	downstream_gene_variant	MODIFIER	inv	intergenic	intergenic	intergenic
A373R7	2R	11659169	A	G	TAG	A>G	CTA	T>C	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG13198	intron	Roc2	FBgn0044020
A373R7	2R	12020056	C	G	ACT	C>G	ACT	C>G	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	otk	intergenic	intergenic	intergenic
A373R7	2R	12251154	G	A	GGA	G>A	TCC	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44315	intergenic	intergenic	intergenic
A373R7	2R	12479176	T	A	CTT	T>A	CTT	T>A	0.75	somaticsniper,strelka	intron_variant	MODIFIER	Dh44-R2	intron	Dh44-R2	FBgn0033744
A373R7	2R	12848243	C	A	CCG	C>A	CCG	C>A	0.3	somaticsniper,strelka	missense_variant	MODERATE	CG30486	exon_1	CR45468	FBgn0267024
A373R7	2R	13007694	C	A	ACC	C>A	ACC	C>A	0.235	mutect2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Su(z)2	3UTR	Su(z)2	FBgn0265623
A373R7	2R	13275635	G	A	GGC	G>A	GCC	C>T	0.519	mutect2,somaticsniper	intron_variant	MODIFIER	Dh31-R	intron	Dh31-R	FBgn0052843
A373R7	2R	13358381	C	A	CCA	C>A	CCA	C>A	1.0	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG17048	intergenic	intergenic	intergenic
A373R7	2R	13708914	G	T	TGC	G>T	GCA	C>A	0.5	mutect2,somaticsniper	intron_variant	MODIFIER	fas	intron	fas	FBgn0000633
A373R7	2R	13806528	G	T	CGC	G>T	GCG	C>A	0.308	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	stj	5UTR	stj	FBgn0261041
A373R7	2R	13930929	A	G	AAC	A>G	GTT	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
A373R7	2R	14317977	C	A	CCC	C>A	CCC	C>A	0.3	mutect2,somaticsniper	intron_variant	MODIFIER	Shroom	intron	Shroom	FBgn0085408
A373R7	2R	14561976	G	T	GGT	G>T	ACC	C>A	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ttv	intron	ttv	FBgn0265974
A373R7	2R	15008502	G	T	CGT	G>T	ACG	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	hbs	intergenic	intergenic	intergenic
A373R7	2R	15062975	G	C	TGG	G>C	CCA	C>G	0.3	varscan2,somaticsniper	intergenic_region	MODIFIER	CG33467-CR44457	intergenic	intergenic	intergenic
A373R7	2R	15113302	G	T	TGG	G>T	CCA	C>A	0.667	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	chn	intergenic	intergenic	intergenic
A373R7	2R	15211117	C	A	ACT	C>A	ACT	C>A	0.286	mutect2,varscan2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	Ir51a	intron	row	FBgn0033998
A373R7	2R	15358034	G	T	CGC	G>T	GCG	C>A	0.375	mutect2,somaticsniper,strelka	synonymous_variant	LOW	unc-5	exon_3	unc-5	FBgn0034013
A373R7	2R	15387656	G	T	CGG	G>T	CCG	C>A	0.25	mutect2,varscan2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	SRPK	3UTR	SRPK	FBgn0026370
A373R7	2R	15431893	C	A	TCT	C>A	TCT	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG34188	intron	CG43729	FBgn0263980
A373R7	2R	15774700	C	G	GCT	C>G	GCT	C>G	0.5	mutect2,somaticsniper	missense_variant	MODERATE	Zasp52	5UTR	Zasp52	FBgn0265991
A373R7	2R	16379285	G	T	AGC	G>T	GCT	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43187	exon_1	CR45316	FBgn0266855
A373R7	2R	16406464	C	T	ACA	C>T	ACA	C>T	0.308	somaticsniper,strelka	intron_variant	MODIFIER	Sema-2b	intron	Sema-2b	FBgn0264273
A373R7	2R	16475379	G	T	GGA	G>T	TCC	C>A	0.333	mutect2,strelka	intergenic_region	MODIFIER	CheB53b-CG15712	intergenic	intergenic	intergenic
A373R7	2R	16602175	T	C	TTT	T>C	TTT	T>C	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG5089	intron	CG8303	FBgn0034143
A373R7	2R	16621254	G	T	TGG	G>T	CCA	C>A	0.231	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	Alk	intron	CG5065	FBgn0034145
A373R7	2R	16711617	G	T	TGG	G>T	CCA	C>A	0.429	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CG30463	intron	CG30463	FBgn0050463
A373R7	2R	16780510	G	T	AGC	G>T	GCT	C>A	0.5	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	resilin	5UTR	resilin	FBgn0034157
A373R7	2R	16794158	C	A	ACT	C>A	ACT	C>A	0.231	mutect2,varscan2,somaticsniper,strelka	missense_variant	MODERATE	CG15615	exon_4	CG15615	FBgn0034159
A373R7	2R	17374864	C	A	CCC	C>A	CCC	C>A	0.667	mutect2,strelka	3_prime_UTR_variant	MODIFIER	mbl	3UTR	mbl	FBgn0265487
A373R7	2R	17679632	A	G	GAT	A>G	ATC	T>C	0.5	mutect2,strelka	upstream_gene_variant	MODIFIER	Sema-1b	intron	Sema-1b	FBgn0016059
A373R7	2R	18029325	C	A	TCG	C>A	TCG	C>A	0.824	mutect2,somaticsniper	intergenic_region	MODIFIER	CG10910-CG5773	intergenic	intergenic	intergenic
A373R7	2R	18144858	C	A	GCA	C>A	GCA	C>A	0.444	mutect2,somaticsniper,strelka	missense_variant	MODERATE	pAbp	exon_3	pAbp	FBgn0265297
A373R7	2R	18376916	C	A	CCA	C>A	CCA	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR42736	intergenic	intergenic	intergenic
A373R7	2R	18890958	C	A	TCA	C>A	TCA	C>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	sano	intron	sano	FBgn0034408
A373R7	2R	19300304	C	T	ACG	C>T	ACG	C>T	0.333	mutect2,strelka	missense_variant	MODERATE	Tab2	exon_2	Tab2	FBgn0086358
A373R7	2R	19655353	C	T	GCG	C>T	GCG	C>T	0.815	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CR44212	intergenic	intergenic	intergenic
A373R7	2R	19709060	G	T	CGC	G>T	GCG	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Obp56e	intergenic	intergenic	intergenic
A373R7	2R	20103495	C	T	TCA	C>T	TCA	C>T	0.231	varscan2,strelka	intergenic_region	MODIFIER	CR44633-18w	intergenic	intergenic	intergenic
A373R7	2R	20108077	C	A	TCA	C>A	TCA	C>A	0.429	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	18w	intergenic	intergenic	intergenic
A373R7	2R	20167741	G	A	AGC	G>A	GCT	C>T	0.286	somaticsniper,strelka	intergenic_region	MODIFIER	CR45229-CG16894	intergenic	intergenic	intergenic
A373R7	2R	20269210	C	A	GCA	C>A	GCA	C>A	0.333	mutect2,somaticsniper,strelka	synonymous_variant	LOW	CG8908	exon_8	CG8908	FBgn0034493
A373R7	2R	20437137	T	C	ATT	T>C	ATT	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG12484	intron	CG12484	FBgn0086604
A373R7	2R	20437138	T	G	TTC	T>G	TTC	T>G	0.8	somaticsniper,strelka	intron_variant	MODIFIER	CG12484	intron	CG12484	FBgn0086604
A373R7	2R	20610966	T	C	ATA	T>C	ATA	T>C	0.429	somaticsniper,strelka	downstream_gene_variant	MODIFIER	bl	intron	Hil	FBgn0050147
A373R7	2R	20844281	T	A	GTG	T>A	GTG	T>A	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG17999	intergenic	intergenic	intergenic
A373R7	2R	21016070	G	T	GGC	G>T	GCC	C>A	0.154	mutect2,strelka	stop_gained	HIGH	CG3295	exon	CG3295	FBgn0034573
A373R7	2R	21128537	C	A	CCA	C>A	CCA	C>A	0.25	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG4050	intergenic	intergenic	intergenic
A373R7	2R	21642839	T	C	TTC	T>C	TTC	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG10082	intergenic	intergenic	intergenic
A373R7	2R	22143773	G	T	GGA	G>T	TCC	C>A	0.308	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG11269	intron	a	FBgn0000008
A373R7	2R	23155056	G	T	GGG	G>T	CCC	C>A	0.75	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG43207	intron	CG9899	FBgn0034829
A373R7	2R	23366130	G	T	AGG	G>T	CCT	C>A	0.667	mutect2,strelka	splice_region_variant&intron_variant	LOW	vir	intron	vir	FBgn0003977
A373R7	2R	23773450	C	T	TCC	C>T	TCC	C>T	0.81	mutect2,somaticsniper	intron_variant	MODIFIER	CG9850	intron	CG9850	FBgn0034903
A373R7	2R	24102701	T	A	GTC	T>A	GTC	T>A	0.5	mutect2,strelka	missense_variant	MODERATE	enok	exon_4	enok	FBgn0034975
A373R7	2R	24123044	A	G	TAC	A>G	GTA	T>C	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG3257	3UTR	CG3257	FBgn0034978
A373R7	2R	24274548	G	A	GGG	G>A	CCC	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	nvy	intergenic	intergenic	intergenic
A373R7	2R	24605222	G	T	CGG	G>T	CCG	C>A	0.286	mutect2,somaticsniper	synonymous_variant	LOW	CG4707	exon_3	CG4707	FBgn0035036
A373R7	2R	24969284	T	G	CTA	T>G	CTA	T>G	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG30424	intron	RpL19	FBgn0002607
A373R7	2R	25165403	C	A	TCG	C>A	TCG	C>A	0.211	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG34038	intergenic	intergenic	intergenic
A373R7	3L	77508	C	A	ACA	C>A	ACA	C>A	0.75	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43988	intergenic	intergenic	intergenic
A373R7	3L	151305	G	T	TGT	G>T	ACA	C>A	0.5	mutect2,strelka	missense_variant	MODERATE	Dic61B	exon_4	Dic61B	FBgn0263988
A373R7	3L	444772	C	A	TCG	C>A	TCG	C>A	0.333	mutect2,strelka	missense_variant	MODERATE	klar	exon_12	klar	FBgn0001316
A373R7	3L	963382	C	A	TCT	C>A	TCT	C>A	0.4	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45809	intron	Glut1	FBgn0264574
A373R7	3L	1728262	C	A	TCT	C>A	TCT	C>A	0.462	mutect2,somaticsniper	downstream_gene_variant	MODIFIER	CG12035	intron	drpr	FBgn0027594
A373R7	3L	1924524	C	A	TCA	C>A	TCA	C>A	0.5	mutect2,strelka	missense_variant	MODERATE	Dbx	exon_2	Dbx	FBgn0261723
A373R7	3L	2221376	C	T	TCT	C>T	TCT	C>T	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CG15878-Oseg2	intergenic	intergenic	intergenic
A373R7	3L	2625610	C	T	TCG	C>T	TCG	C>T	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45981	intron	Pxn	FBgn0011828
A373R7	3L	2842572	T	C	ATT	T>C	ATT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A373R7	3L	3674745	T	C	CTT	T>C	CTT	T>C	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CG43098-CR43484	intergenic	intergenic	intergenic
A373R7	3L	3783273	G	T	TGG	G>T	CCA	C>A	0.4	mutect2,strelka	intron_variant	MODIFIER	CG32264	intron	CG32264	FBgn0052264
A373R7	3L	4114890	T	A	GTT	T>A	GTT	T>A	0.5	mutect2,somaticsniper	3_prime_UTR_variant	MODIFIER	Chd64	3UTR	Chd64	FBgn0035499
A373R7	3L	4420688	A	C	TAT	A>C	ATA	T>G	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15020	intergenic	intergenic	intergenic
A373R7	3L	5523687	G	T	TGG	G>T	CCA	C>A	0.25	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
A373R7	3L	5643777	T	C	ATT	T>C	ATT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Blimp-1	intron	Blimp-1	FBgn0035625
A373R7	3L	5927868	G	T	GGC	G>T	GCC	C>A	0.429	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Vap-33B	5UTR	CG33523	FBgn0053523
A373R7	3L	6053466	C	A	TCT	C>A	TCT	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tan	intergenic	intergenic	intergenic
A373R7	3L	6120377	C	A	GCC	C>A	GCC	C>A	0.364	mutect2,varscan2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	l(3)mbn	intron	Ets65A	FBgn0005658
A373R7	3L	6460915	G	T	AGC	G>T	GCT	C>A	0.909	mutect2,somaticsniper	intron_variant	MODIFIER	CG42747	intron	CG42747	FBgn0261801
A373R7	3L	6912887	G	T	GGA	G>T	TCC	C>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	Prat2	exon	Prat2	FBgn0041194
A373R7	3L	7128814	G	T	GGA	G>T	TCC	C>A	0.375	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	msl-3	intergenic	intergenic	intergenic
A373R7	3L	8672824	G	A	TGG	G>A	CCA	C>T	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	h	intergenic	intergenic	intergenic
A373R7	3L	9094717	G	A	GGC	G>A	GCC	C>T	0.571	mutect2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	CG32032	exon	CG32032	FBgn0043806
A373R7	3L	9613290	C	T	GCG	C>T	GCG	C>T	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG3280	exon	CG46121	FBgn0267796
A373R7	3L	9713431	C	A	GCG	C>A	GCG	C>A	0.667	mutect2,somaticsniper,strelka	synonymous_variant	LOW	SH3PX1	exon_1	SH3PX1	FBgn0040475
A373R7	3L	10339495	A	G	TAT	A>G	ATA	T>C	0.5	somaticsniper,strelka	intron_variant	MODIFIER	CR46006	ncRNA	CR46006	FBgn0267668
A373R7	3L	10630975	A	T	AAA	A>T	TTT	T>A	0.5	mutect2,strelka	upstream_gene_variant	MODIFIER	CG14151	intergenic	intergenic	intergenic
A373R7	3L	10666784	C	A	TCG	C>A	TCG	C>A	0.588	mutect2,somaticsniper	downstream_gene_variant	MODIFIER	CG8003	intron	simj	FBgn0010762
A373R7	3L	11072518	G	T	GGC	G>T	GCC	C>A	0.667	mutect2,somaticsniper,strelka	missense_variant	MODERATE	Mocs1	exon	Mocs1	FBgn0263241
A373R7	3L	11602501	G	T	GGG	G>T	CCC	C>A	0.333	mutect2,strelka	upstream_gene_variant	MODIFIER	CG14137	intron	CG7368	FBgn0036179
A373R7	3L	12446687	T	C	CTC	T>C	CTC	T>C	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	toe-eyg	intergenic	intergenic	intergenic
A373R7	3L	12970590	T	A	CTC	T>A	CTC	T>A	0.571	mutect2,somaticsniper,freebayes	upstream_gene_variant	MODIFIER	Or69a	intergenic	intergenic	intergenic
A373R7	3L	13091928	C	A	TCG	C>A	TCG	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG17300	intergenic	intergenic	intergenic
A373R7	3L	13322010	T	A	CTA	T>A	CTA	T>A	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44558	intergenic	intergenic	intergenic
A373R7	3L	13385268	G	T	CGG	G>T	CCG	C>A	0.429	mutect2,somaticsniper	missense_variant	MODERATE	CG14110	exon	CG14110	FBgn0036352
A373R7	3L	13444438	C	A	ACG	C>A	ACG	C>A	0.2	somaticsniper,strelka	missense_variant	MODERATE	CG10732	exon_5	cmb	FBgn0036365
A373R7	3L	13570343	A	G	GAA	A>G	TTC	T>C	0.273	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A373R7	3L	13783877	C	A	CCA	C>A	CCA	C>A	0.6	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A373R7	3L	14244786	A	G	AAA	A>G	TTT	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44560	intergenic	intergenic	intergenic
A373R7	3L	14427760	C	A	CCC	C>A	CCC	C>A	0.333	mutect2,strelka	upstream_gene_variant	MODIFIER	bbg	intron	bbg	FBgn0087007
A373R7	3L	14874201	T	C	TTG	T>C	TTG	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG17839	intron	CG17839	FBgn0036454
A373R7	3L	14986274	C	A	CCC	C>A	CCC	C>A	0.333	mutect2,strelka	upstream_gene_variant	MODIFIER	mnd	intron	mnd	FBgn0002778
A373R7	3L	15675386	T	A	TTA	T>A	TTA	T>A	0.167	mutect2,strelka	upstream_gene_variant	MODIFIER	CG7304	intergenic	intergenic	intergenic
A373R7	3L	16033161	G	T	TGG	G>T	CCA	C>A	1.0	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG42717	5UTR	CG42717	FBgn0261634
A373R7	3L	16070458	G	T	CGA	G>T	TCG	C>A	0.5	mutect2,somaticsniper,strelka	synonymous_variant	LOW	Mbs	exon_11	Mbs	FBgn0005536
A373R7	3L	16156713	C	T	ACA	C>T	ACA	C>T	0.429	somaticsniper,strelka	intron_variant	MODIFIER	CG5151	intron	CG5151	FBgn0036576
A373R7	3L	16209107	A	G	TAG	A>G	CTA	T>C	0.231	varscan2,strelka	upstream_gene_variant	MODIFIER	CR43891	intergenic	intergenic	intergenic
A373R7	3L	16515989	C	T	ACG	C>T	ACG	C>T	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG43373	intron	CG43373	FBgn0263131
A373R7	3L	16959510	T	C	GTG	T>C	GTG	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cpr73D	intron	Nc73EF	FBgn0010352
A373R7	3L	16999056	G	T	TGG	G>T	CCA	C>A	0.444	mutect2,somaticsniper,strelka	synonymous_variant	LOW	CG3764	exon_4	CG3764	FBgn0036684
A373R7	3L	17105690	G	A	AGC	G>A	GCT	C>T	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Rbp6	intron	Rbp6	FBgn0260943
A373R7	3L	17296654	C	A	TCA	C>A	TCA	C>A	0.6	somaticsniper,strelka	intergenic_region	MODIFIER	CR45436-mir-219	intergenic	intergenic	intergenic
A373R7	3L	17418564	A	G	CAC	A>G	GTG	T>C	0.294	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	blot	intron	blot	FBgn0027660
A373R7	3L	17456098	A	T	AAA	A>T	TTT	T>A	0.5	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG18265	3UTR	CG18265	FBgn0036725
A373R7	3L	18375041	T	A	TTG	T>A	TTG	T>A	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	grim-rpr	intergenic	intergenic	intergenic
A373R7	3L	18451808	T	C	ATA	T>C	ATA	T>C	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44670	intergenic	intergenic	intergenic
A373R7	3L	19427805	C	A	GCA	C>A	GCA	C>A	0.429	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR32205	intergenic	intergenic	intergenic
A373R7	3L	19485680	T	A	CTG	T>A	CTG	T>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	brv1	exon	brv1	FBgn0036874
A373R7	3L	19526473	C	A	GCA	C>A	GCA	C>A	0.273	mutect2,somaticsniper,strelka	missense_variant	MODERATE	Cpr76Bc	exon	Cpr76Bc	FBgn0036880
A373R7	3L	21229548	T	C	GTC	T>C	GTC	T>C	0.444	somaticsniper,strelka	intron_variant	MODIFIER	Eip78C	intron	Eip78C	FBgn0004865
A373R7	3L	21622114	C	A	CCT	C>A	CCT	C>A	0.333	mutect2,somaticsniper,strelka	missense_variant&splice_region_variant	MODERATE	CG7166	exon_7	CG7166	FBgn0037107
A373R7	3L	22070075	C	A	TCA	C>A	TCA	C>A	0.308	mutect2,varscan2,somaticsniper,strelka	stop_gained	HIGH	CG7139	exon_3	CG7139	FBgn0027532
A373R7	3L	22711852	T	A	GTC	T>A	GTC	T>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG11370	intergenic	intergenic	intergenic
A373R7	3L	24156440	A	T	AAC	A>T	GTT	T>A	0.5	somaticsniper,strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A373R7	3L	24156441	C	G	ACC	C>G	ACC	C>G	0.5	somaticsniper,strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A373R7	3L	25825982	C	A	GCA	C>A	GCA	C>A	0.125	mutect2,varscan2	intron_variant	MODIFIER	CG40178	intron	CG40178	FBgn0058178
A373R7	3L	26370851	G	T	CGG	G>T	CCG	C>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG42598	intron	CG42598	FBgn0260997
A373R7	3L	26875102	A	G	TAG	A>G	CTA	T>C	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A373R7	3R	37082	G	A	GGA	G>A	TCC	C>T	0.292	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A373R7	3R	800575	C	T	TCC	C>T	TCC	C>T	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CR41571-CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	1867527	A	G	AAA	A>G	TTT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	2220060	A	G	GAA	A>G	TTC	T>C	0.267	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	2220083	T	C	ATC	T>C	ATC	T>C	0.235	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	2220099	T	G	GTA	T>G	GTA	T>G	0.222	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	2220102	C	T	CCC	C>T	CCC	C>T	0.222	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	2220126	A	G	TAT	A>G	ATA	T>C	0.222	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	3175998	G	A	TGT	G>A	ACA	C>T	0.357	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A373R7	3R	3176012	G	C	CGG	G>C	CCG	C>G	0.286	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A373R7	3R	3572628	A	G	AAG	A>G	CTT	T>C	0.261	somaticsniper,strelka	intron_variant	MODIFIER	Parp	intron	Parp	FBgn0010247
A373R7	3R	3797682	G	T	CGT	G>T	ACG	C>A	0.571	somaticsniper,strelka	intergenic_region	MODIFIER	CG41128-CG41099	intergenic	intergenic	intergenic
A373R7	3R	3888650	G	T	GGG	G>T	CCC	C>A	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CG41099-CG42402	intergenic	intergenic	intergenic
A373R7	3R	4217251	T	C	CTA	T>C	CTA	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14636	intron	aux	FBgn0037218
A373R7	3R	4309931	C	A	GCC	C>A	GCC	C>A	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Vps24	3UTR	Vps24	FBgn0037231
A373R7	3R	4317360	T	A	TTC	T>A	TTC	T>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9795	intron	Syt14	FBgn0261086
A373R7	3R	4387804	G	T	AGA	G>T	TCT	C>A	0.429	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	tub	5UTR	tub	FBgn0003882
A373R7	3R	4462152	C	A	TCA	C>A	TCA	C>A	0.25	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG31523	intron	CG31522	FBgn0051522
A373R7	3R	4722373	T	A	GTT	T>A	GTT	T>A	0.231	varscan2,strelka	upstream_gene_variant	MODIFIER	CR44923	intron	Nep2	FBgn0027570
A373R7	3R	4787207	T	G	TTA	T>G	TTA	T>G	0.6	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	ctrip	3UTR	ctrip	FBgn0260794
A373R7	3R	4929195	A	G	TAT	A>G	ATA	T>C	0.667	somaticsniper,strelka	missense_variant	MODERATE	Cdep	exon_11	Cdep	FBgn0265082
A373R7	3R	5634249	C	A	GCG	C>A	GCG	C>A	1.0	somaticsniper,strelka	synonymous_variant	LOW	CG12171	exon	CG12171	FBgn0037354
A373R7	3R	5773703	C	A	GCA	C>A	GCA	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG2082	intron	CG2082	FBgn0027608
A373R7	3R	6194585	A	T	TAA	A>T	TTA	T>A	1.0	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	NPFR	3UTR	NPFR	FBgn0037408
A373R7	3R	6385444	G	T	AGG	G>T	CCT	C>A	0.444	mutect2,somaticsniper,strelka	missense_variant	MODERATE	godzilla	exon_3	godzilla	FBgn0037442
A373R7	3R	6560728	C	A	TCT	C>A	TCT	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG1137	intron	dpr11	FBgn0053202
A373R7	3R	6686644	A	G	GAC	A>G	GTC	T>C	0.273	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ccp84Ag	intergenic	intergenic	intergenic
A373R7	3R	6919127	G	T	AGA	G>T	TCT	C>A	0.5	mutect2,strelka	intron_variant	MODIFIER	Antp	intron	Antp	FBgn0260642
A373R7	3R	7357399	T	C	ATT	T>C	ATT	T>C	0.429	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG17944	intergenic	intergenic	intergenic
A373R7	3R	7659088	C	A	GCA	C>A	GCA	C>A	0.2	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Nlg1	intron	Nlg1	FBgn0051146
A373R7	3R	7908729	C	A	GCG	C>A	GCG	C>A	0.3	mutect2,somaticsniper,strelka	synonymous_variant	LOW	Taf7	exon	Taf7	FBgn0024909
A373R7	3R	8126081	G	T	CGT	G>T	ACG	C>A	0.429	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG9667	exon_3	CG9667	FBgn0037550
A373R7	3R	8215376	G	T	GGC	G>T	GCC	C>A	0.286	mutect2,strelka	upstream_gene_variant	MODIFIER	CG7800	intergenic	intergenic	intergenic
A373R7	3R	8486701	C	T	CCA	C>T	CCA	C>T	0.444	somaticsniper,strelka	intergenic_region	MODIFIER	CG45263-Or85b	intergenic	intergenic	intergenic
A373R7	3R	9213984	G	T	TGC	G>T	GCA	C>A	0.4	mutect2,strelka	missense_variant	MODERATE	pum	exon_7	pum	FBgn0003165
A373R7	3R	9451627	C	T	TCC	C>T	TCC	C>T	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	ps	3UTR	ps	FBgn0261552
A373R7	3R	10216203	C	A	GCG	C>A	GCG	C>A	0.2	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Timp	intron	Syn	FBgn0004575
A373R7	3R	10538328	A	G	CAA	A>G	TTG	T>C	0.667	mutect2,strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A373R7	3R	10563747	T	C	TTT	T>C	TTT	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A373R7	3R	10586832	G	T	AGC	G>T	GCT	C>A	0.667	mutect2,strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A373R7	3R	10604723	G	T	TGA	G>T	TCA	C>A	0.364	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A373R7	3R	10882029	G	T	CGC	G>T	GCG	C>A	0.667	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Tpc1	exon_1	Tpc1	FBgn0037852
A373R7	3R	10954111	T	A	TTT	T>A	TTT	T>A	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Tengl4	intergenic	intergenic	intergenic
A373R7	3R	11085043	G	T	GGG	G>T	CCC	C>A	0.235	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43449	exon_1	CR44940	FBgn0266245
A373R7	3R	11317298	G	T	AGG	G>T	CCT	C>A	0.4	mutect2,somaticsniper,strelka	intergenic_region	MODIFIER	CR45055-pros	intergenic	intergenic	intergenic
A373R7	3R	11613292	A	G	TAG	A>G	CTA	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Jupiter	intron	Jupiter	FBgn0051363
A373R7	3R	11879236	C	T	GCA	C>T	GCA	C>T	0.333	mutect2,strelka	stop_gained	HIGH	sad	exon_5	sad	FBgn0003312
A373R7	3R	12455412	C	A	CCT	C>A	CCT	C>A	0.308	somaticsniper,strelka	missense_variant&splice_region_variant	MODERATE	CG18549	exon	CG18549	FBgn0038053
A373R7	3R	12613409	C	A	GCA	C>A	GCA	C>A	0.667	mutect2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CR46017	intergenic	intergenic	intergenic
A373R7	3R	12764265	G	A	GGC	G>A	GCC	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44232	intron	beat-Vc	FBgn0038084
A373R7	3R	13210441	G	T	AGT	G>T	ACT	C>A	0.5	mutect2,strelka	intron_variant	MODIFIER	CG8483	intron	CG8483	FBgn0038126
A373R7	3R	13321821	C	A	CCC	C>A	CCC	C>A	0.3	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG45080	intergenic	intergenic	intergenic
A373R7	3R	13581835	T	C	GTT	T>C	GTT	T>C	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CR43848-CG14370	intergenic	intergenic	intergenic
A373R7	3R	13903185	C	A	GCT	C>A	GCT	C>A	0.333	mutect2,somaticsniper,strelka	missense_variant	MODERATE	ems	exon_1	ems	FBgn0000576
A373R7	3R	14266362	G	C	GGT	G>C	ACC	C>G	0.222	mutect2,somaticsniper,strelka	missense_variant	MODERATE	trx	exon_6	trx	FBgn0003862
A373R7	3R	14562661	T	A	GTC	T>A	GTC	T>A	0.667	somaticsniper,strelka	synonymous_variant	LOW	CG14851	exon	CG14851	FBgn0038240
A373R7	3R	14591180	G	T	AGA	G>T	TCT	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	stumps	intron	stumps	FBgn0020299
A373R7	3R	14899078	C	A	CCG	C>A	CCG	C>A	0.667	mutect2,strelka	missense_variant	MODERATE	CG3817	exon	CG3817	FBgn0038275
A373R7	3R	15083283	G	T	CGG	G>T	CCG	C>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	CG6966	exon_2	CG6966	FBgn0038286
A373R7	3R	15318623	G	T	TGG	G>T	CCA	C>A	0.429	somaticsniper,strelka	synonymous_variant	LOW	CG6276	exon	CG6276	FBgn0038316
A373R7	3R	15777446	C	A	CCT	C>A	CCT	C>A	0.333	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG4525	exon	CG4525	FBgn0038358
A373R7	3R	16225172	G	T	TGC	G>T	GCA	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tara	intergenic	intergenic	intergenic
A373R7	3R	16645257	G	A	TGA	G>A	TCA	C>T	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG10324	exon	CG10324	FBgn0038454
A373R7	3R	17074326	G	T	CGG	G>T	CCG	C>A	0.235	mutect2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Keap1	3UTR	Keap1	FBgn0038475
A373R7	3R	17700370	A	G	CAG	A>G	CTG	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR46036	intron	osa	FBgn0261885
A373R7	3R	18370530	G	A	GGC	G>A	GCC	C>T	0.667	somaticsniper,strelka	synonymous_variant	LOW	gl	exon_4	gl	FBgn0004618
A373R7	3R	18388687	C	A	GCG	C>A	GCG	C>A	0.8	mutect2,somaticsniper,strelka	missense_variant	MODERATE	Vha100-4	exon_2	Vha100-4	FBgn0038613
A373R7	3R	18710925	C	A	CCC	C>A	CCC	C>A	0.158	mutect2,strelka	intron_variant	MODIFIER	VAChT	intron	VAChT	FBgn0270928
A373R7	3R	19153527	C	T	ACT	C>T	ACT	C>T	0.667	somaticsniper,strelka	5_prime_UTR_premature_start_codon_gain_variant	LOW	CG5835	5UTR	CG5835	FBgn0038682
A373R7	3R	19560095	G	T	TGC	G>T	GCA	C>A	0.3	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
A373R7	3R	19670219	G	T	AGC	G>T	GCT	C>A	0.429	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG7432	exon_5	CG7432	FBgn0038727
A373R7	3R	19908922	C	A	CCC	C>A	CCC	C>A	0.364	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Surf6	exon_1	CR45048	FBgn0266408
A373R7	3R	20496662	G	T	TGT	G>T	ACA	C>A	0.375	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Dic2	intergenic	intergenic	intergenic
A373R7	3R	20571736	C	A	ACG	C>A	ACG	C>A	0.333	mutect2,strelka	missense_variant	MODERATE	CG5191	exon	CG5191	FBgn0038803
A373R7	3R	21018016	G	T	GGA	G>T	TCC	C>A	0.214	mutect2,varscan2,somaticsniper,strelka	missense_variant	MODERATE	Rlip	exon_2	Rlip	FBgn0026056
A373R7	3R	21330850	A	T	CAT	A>T	ATG	T>A	0.5	somaticsniper,strelka	intron_variant	MODIFIER	CG16791	intron	CG16791	FBgn0038881
A373R7	3R	21918961	T	A	ATA	T>A	ATA	T>A	0.667	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG17843	intergenic	intergenic	intergenic
A373R7	3R	22374420	C	A	GCC	C>A	GCC	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG7069	exon	CG7069	FBgn0038952
A373R7	3R	22633199	G	T	CGC	G>T	GCG	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	loco	intron	loco	FBgn0020278
A373R7	3R	23197358	C	T	ACG	C>T	ACG	C>T	0.429	somaticsniper,strelka	missense_variant	MODERATE	cnc	exon_7	cnc	FBgn0262975
A373R7	3R	23785732	G	T	GGA	G>T	TCC	C>A	0.4	mutect2,strelka	upstream_gene_variant	MODIFIER	Nup98-96	intron	mbc	FBgn0015513
A373R7	3R	25095507	G	C	AGA	G>C	TCT	C>G	0.214	mutect2,somaticsniper,strelka	missense_variant	MODERATE	fd96Cb	exon	fd96Cb	FBgn0004898
A373R7	3R	25267036	G	T	GGA	G>T	TCC	C>A	0.364	mutect2,somaticsniper,strelka	missense_variant	MODERATE	RIOK2	exon_5	CR45214	FBgn0266741
A373R7	3R	25375315	A	T	CAA	A>T	TTG	T>A	0.4	mutect2,somaticsniper	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
A373R7	3R	26639103	A	G	AAT	A>G	ATT	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	TwdlD	ncRNA	CR46233	FBgn0267953
A373R7	3R	26824566	G	T	TGG	G>T	CCA	C>A	0.429	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Tl	intron	Tl	FBgn0262473
A373R7	3R	27280739	G	A	TGT	G>A	ACA	C>T	0.375	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3368	intron	mrt	FBgn0039507
A373R7	3R	28237584	C	T	GCG	C>T	GCG	C>T	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG34354	exon_2	CR45041	FBgn0266401
A373R7	3R	28905860	C	A	GCG	C>A	GCG	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	Doa	exon_2	Doa	FBgn0265998
A373R7	3R	29096437	A	G	AAT	A>G	ATT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG11873	ncRNA	CR45030	FBgn0266390
A373R7	3R	29118950	G	A	GGC	G>A	GCC	C>T	1.0	somaticsniper,strelka	missense_variant	MODERATE	yem	exon	yem	FBgn0005596
A373R7	3R	29144603	A	G	AAT	A>G	ATT	T>C	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Pglym78	intron	CG14516	FBgn0039640
A373R7	3R	30087475	C	A	GCG	C>A	GCG	C>A	0.182	mutect2,strelka	intron_variant	MODIFIER	sima	intron	sima	FBgn0266411
A373R7	3R	30134971	C	A	ACA	C>A	ACA	C>A	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	AdoR	3UTR	AdoR	FBgn0039747
A373R7	3R	30610879	C	A	CCC	C>A	CCC	C>A	0.5	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45571	intergenic	intergenic	intergenic
A373R7	3R	30728272	G	T	TGG	G>T	CCA	C>A	0.4	mutect2,strelka	downstream_gene_variant	MODIFIER	CG1340	intergenic	intergenic	intergenic
A373R7	3R	30953712	C	A	GCG	C>A	GCG	C>A	0.4	mutect2,strelka	intergenic_region	MODIFIER	CG15550-CG15548	intergenic	intergenic	intergenic
A373R7	3R	31105369	C	A	CCA	C>A	CCA	C>A	0.25	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15553	intergenic	intergenic	intergenic
A373R7	3R	31118561	A	G	TAT	A>G	ATA	T>C	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Prosalpha3T	intergenic	intergenic	intergenic
A373R7	3R	31208205	C	A	TCG	C>A	TCG	C>A	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	CG1544	intron	chp	FBgn0267435
A373R7	3R	31208229	C	A	CCA	C>A	CCA	C>A	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	CG1544	intron	chp	FBgn0267435
A373R7	3R	31496437	G	T	GGA	G>T	TCC	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	mey	intergenic	intergenic	intergenic
A373R7	3R	31902143	A	G	TAA	A>G	TTA	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	heph	intron	heph	FBgn0011224
A373R7	3R	32010851	G	T	TGG	G>T	CCA	C>A	0.462	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CR45556	intron	heph	FBgn0011224
A373R7	4	284157	G	A	TGC	G>A	GCA	C>T	0.5	somaticsniper,strelka	intron_variant	MODIFIER	Syt7	intron	Syt7	FBgn0039900
A373R7	4	1123496	G	T	TGG	G>T	CCA	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cals	intergenic	intergenic	intergenic
A373R7	X	794513	G	T	TGC	G>T	GCA	C>A	0.5	mutect2,strelka	missense_variant	MODERATE	CG16989	exon	CG16989	FBgn0025621
A373R7	X	882150	C	G	GCA	C>G	GCA	C>G	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG43867	intron	CG43867	FBgn0264449
A373R7	X	1022799	G	C	CGG	G>C	CCG	C>G	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3021	intron	CG32814	FBgn0052814
A373R7	X	1041495	C	T	ACC	C>T	ACC	C>T	0.667	somaticsniper,strelka	missense_variant	MODERATE	su(w[a])	exon	su(w[a])	FBgn0003638
A373R7	X	1196958	G	T	TGG	G>T	CCA	C>A	0.5	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14625	intergenic	intergenic	intergenic
A373R7	X	1252949	T	A	ATC	T>A	ATC	T>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Atf3	intron	Atf3	FBgn0028550
A373R7	X	1293608	C	A	CCG	C>A	CCG	C>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	DAAM	exon_5	DAAM	FBgn0025641
A373R7	X	1431595	C	A	CCG	C>A	CCG	C>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	futsch	intron	futsch	FBgn0259108
A373R7	X	1538254	C	A	GCA	C>A	GCA	C>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	Mur2B	intron	Mur2B	FBgn0025390
A373R7	X	1539240	G	T	AGC	G>T	GCT	C>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Mur2B	intron	Mur2B	FBgn0025390
A373R7	X	1777361	C	A	GCT	C>A	GCT	C>A	0.4	mutect2,strelka	intron_variant	MODIFIER	Adar	intron	Adar	FBgn0026086
A373R7	X	1815850	C	A	CCT	C>A	CCT	C>A	0.75	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG14810	intron	CG42666	FBgn0261548
A373R7	X	1991847	T	C	ATG	T>C	ATG	T>C	0.6	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	Hr4	intron	Hr4	FBgn0264562
A373R7	X	2056918	A	T	GAT	A>T	ATC	T>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	Sik2	exon_8	Sik2	FBgn0025625
A373R7	X	2057353	C	T	GCG	C>T	GCG	C>T	0.667	somaticsniper,strelka	synonymous_variant	LOW	Sik2	exon_8	Sik2	FBgn0025625
A373R7	X	2197845	A	G	AAA	A>G	TTT	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14053	intron	Mct1	FBgn0023549
A373R7	X	2280587	A	G	CAT	A>G	ATG	T>C	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG2865	3UTR	CG2865	FBgn0023526
A373R7	X	2439676	C	T	GCT	C>T	GCT	C>T	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	tko	intergenic	intergenic	intergenic
A373R7	X	2665789	A	G	CAA	A>G	TTG	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	sgg	intron	sgg	FBgn0003371
A373R7	X	2689505	T	C	TTC	T>C	TTC	T>C	1.0	somaticsniper,strelka	splice_region_variant&synonymous_variant	LOW	per	exon_4	per	FBgn0003068
A373R7	X	3141063	A	G	CAG	A>G	CTG	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	N	intron	N	FBgn0004647
A373R7	X	3190858	G	A	GGC	G>A	GCC	C>T	0.667	somaticsniper,strelka	intron_variant	MODIFIER	dnc	intron	dnc	FBgn0000479
A373R7	X	3426418	T	C	TTA	T>C	TTA	T>C	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	tRNA:CR32493	intron	CG12535	FBgn0029657
A373R7	X	4017965	G	T	TGT	G>T	ACA	C>A	0.4	mutect2,strelka	intergenic_region	MODIFIER	CR43298-CR45482	intergenic	intergenic	intergenic
A373R7	X	4062838	G	C	CGA	G>C	TCG	C>G	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CR45482-CG43689	intergenic	intergenic	intergenic
A373R7	X	4067987	T	A	CTC	T>A	CTC	T>A	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CR45482-CG43689	intergenic	intergenic	intergenic
A373R7	X	4219563	G	T	GGA	G>T	TCC	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15571	intron	CG15570	FBgn0029697
A373R7	X	4390740	G	C	AGA	G>C	TCT	C>G	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CR32773	ncRNA	CR32773	FBgn0052773
A373R7	X	4402001	C	T	TCT	C>T	TCT	C>T	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CR32773	ncRNA	CR32773	FBgn0052773
A373R7	X	4407204	A	C	AAT	A>C	ATT	T>G	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CR32773	ncRNA	CR32773	FBgn0052773
A373R7	X	4480179	G	T	TGG	G>T	CCA	C>A	0.5	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CR32773	intron	bi	FBgn0000179
A373R7	X	4488786	C	T	ACC	C>T	ACC	C>T	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	bi	ncRNA	CR32773	FBgn0052773
A373R7	X	4620196	G	A	CGC	G>A	GCG	C>T	1.0	somaticsniper,strelka	missense_variant	MODERATE	peb	exon_2	peb	FBgn0003053
A373R7	X	5093083	G	T	AGG	G>T	CCT	C>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	rg	intron	rg	FBgn0266098
A373R7	X	5194036	T	A	TTT	T>A	TTT	T>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	rg	intron	rg	FBgn0266098
A373R7	X	5535036	A	G	AAA	A>G	TTT	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	Vsx2	intron	Vsx2	FBgn0263512
A373R7	X	5540139	G	T	CGG	G>T	CCG	C>A	0.5	mutect2,strelka	intron_variant	MODIFIER	Vsx2	intron	Vsx2	FBgn0263512
A373R7	X	5630130	A	T	AAG	A>T	CTT	T>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG42492	exon_12	CG42492	FBgn0259994
A373R7	X	5823200	G	T	TGA	G>T	TCA	C>A	0.5	mutect2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG15765	intron	CG15765	FBgn0029814
A373R7	X	6095096	T	A	ATT	T>A	ATT	T>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	raptor	intron	Nep1	FBgn0029843
A373R7	X	6466118	A	G	AAA	A>G	TTT	T>C	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG42340	3UTR	CG42340	FBgn0259242
A373R7	X	6497482	C	T	TCT	C>T	TCT	C>T	1.0	somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG42340	intron	CG42340	FBgn0259242
A373R7	X	6536867	A	T	GAA	A>T	TTC	T>A	0.667	somaticsniper,strelka	missense_variant&splice_region_variant	MODERATE	dx	exon_3	dx	FBgn0000524
A373R7	X	6675901	C	A	TCA	C>A	TCA	C>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	Mcm6	exon	Mcm6	FBgn0025815
A373R7	X	6718630	T	C	ATT	T>C	ATT	T>C	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG14441	3UTR	CG14441	FBgn0029895
A373R7	X	6741474	A	G	AAA	A>G	TTT	T>C	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3168	intergenic	intergenic	intergenic
A373R7	X	7010104	G	T	GGC	G>T	GCC	C>A	1.0	somaticsniper,strelka	synonymous_variant	LOW	cm	exon_5	cm	FBgn0000330
A373R7	X	7157682	T	C	CTG	T>C	CTG	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG9650	intron	CG9650	FBgn0029939
A373R7	X	7164549	C	A	TCC	C>A	TCC	C>A	0.286	mutect2,strelka	downstream_gene_variant	MODIFIER	CR44357	intron	CG9650	FBgn0029939
A373R7	X	7200639	C	A	GCC	C>A	GCC	C>A	0.667	mutect2,strelka	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A373R7	X	7422178	A	G	GAT	A>G	ATC	T>C	1.0	somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CG34337	intergenic	intergenic	intergenic
A373R7	X	7705689	C	A	CCT	C>A	CCT	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43287	intron	CHES-1-like	FBgn0029504
A373R7	X	7770714	G	T	TGC	G>T	GCA	C>A	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Ir7a	intergenic	intergenic	intergenic
A373R7	X	8210272	T	A	GTT	T>A	GTT	T>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	sdt	intron	sdt	FBgn0261873
A373R7	X	8215587	C	A	GCA	C>A	GCA	C>A	0.286	mutect2,strelka	upstream_gene_variant	MODIFIER	sdt	intron	sdt	FBgn0261873
A373R7	X	8337409	C	T	CCG	C>T	CCG	C>T	1.0	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
A373R7	X	8416894	A	G	GAG	A>G	CTC	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Trf2	intron	Trf2	FBgn0261793
A373R7	X	8510215	A	T	GAC	A>T	GTC	T>A	0.667	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG33181	5UTR	CG33181	FBgn0053181
A373R7	X	8511222	G	T	TGT	G>T	ACA	C>A	0.5	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG33181	5UTR	CG33181	FBgn0053181
A373R7	X	8729009	T	C	ATT	T>C	ATT	T>C	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43297	intergenic	intergenic	intergenic
A373R7	X	9114694	C	A	GCT	C>A	GCT	C>A	0.5	mutect2,somaticsniper,strelka	missense_variant	MODERATE	AP-1gamma	exon_9	AP-1gamma	FBgn0030089
A373R7	X	9198687	C	A	CCG	C>A	CCG	C>A	0.75	mutect2,somaticsniper,strelka	missense_variant	MODERATE	su(r)	exon_3	su(r)	FBgn0086450
A373R7	X	9328582	G	T	TGC	G>T	GCA	C>A	1.0	mutect2,strelka	synonymous_variant	LOW	CG34449	exon_10	CG34449	FBgn0085478
A373R7	X	9390918	G	T	TGC	G>T	GCA	C>A	1.0	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
A373R7	X	9446494	G	C	CGC	G>C	GCG	C>G	1.0	somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG44815	intron	mgl	FBgn0261260
A373R7	X	9469844	C	A	ACC	C>A	ACC	C>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
A373R7	X	9474137	A	G	AAA	A>G	TTT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
A373R7	X	9499982	C	A	TCC	C>A	TCC	C>A	0.8	mutect2,somaticsniper,strelka,freebayes	5_prime_UTR_variant	MODIFIER	mgl	exon_1	mgl	FBgn0261260
A373R7	X	9529859	C	A	TCT	C>A	TCT	C>A	0.286	mutect2,strelka	upstream_gene_variant	MODIFIER	CG34026	intron	CG32700	FBgn0267253
A373R7	X	10128244	C	T	ACA	C>T	ACA	C>T	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	snoRNA:Me18S-A627	ncRNA	CR44894	FBgn0266199
A373R7	X	10135874	T	C	TTA	T>C	TTA	T>C	0.4	mutect2,strelka	intron_variant	MODIFIER	RhoU	ncRNA	CR44894	FBgn0266199
A373R7	X	10137702	C	T	TCG	C>T	TCG	C>T	0.286	mutect2,strelka	intron_variant	MODIFIER	RhoU	ncRNA	CR44894	FBgn0266199
A373R7	X	10240184	A	C	CAA	A>C	TTG	T>G	0.714	somaticsniper,strelka	intron_variant	MODIFIER	Hk	intron	Hk	FBgn0263220
A373R7	X	10240216	T	A	ATT	T>A	ATT	T>A	0.455	somaticsniper,strelka	intron_variant	MODIFIER	Hk	intron	Hk	FBgn0263220
A373R7	X	10240242	A	C	AAC	A>C	GTT	T>G	0.385	somaticsniper,strelka	intron_variant	MODIFIER	Hk	intron	Hk	FBgn0263220
A373R7	X	10369484	C	A	CCG	C>A	CCG	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	l(1)G0289	intron	CG17841	FBgn0028480
A373R7	X	10534963	C	A	CCT	C>A	CCT	C>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	spri	intron	spri	FBgn0085443
A373R7	X	10612659	G	T	TGG	G>T	CCA	C>A	0.667	mutect2,strelka	intron_variant	MODIFIER	CG43347	intron	CG43347	FBgn0263072
A373R7	X	10668508	C	A	GCA	C>A	GCA	C>A	0.4	mutect2,strelka	downstream_gene_variant	MODIFIER	CG12637	intron	X11Lbeta	FBgn0052677
A373R7	X	10834087	C	A	TCA	C>A	TCA	C>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	sbr	exon_9	sbr	FBgn0003321
A373R7	X	10858577	C	A	ACT	C>A	ACT	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG2186	exon_3	CG2186	FBgn0030243
A373R7	X	10943676	C	T	TCA	C>T	TCA	C>T	0.667	somaticsniper,strelka	missense_variant	MODERATE	Myo10A	exon_3	Myo10A	FBgn0263705
A373R7	X	11024764	T	A	TTA	T>A	TTA	T>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG42339	intron	CG42339	FBgn0259241
A373R7	X	11090015	A	T	GAC	A>T	GTC	T>A	1.0	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Vago	3UTR	Vago	FBgn0030262
A373R7	X	11321175	A	G	CAC	A>G	GTG	T>C	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG1657	intergenic	intergenic	intergenic
A373R7	X	11526510	G	T	CGA	G>T	TCG	C>A	0.667	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Drak	intron	Drak	FBgn0052666
A373R7	X	11853014	G	T	AGC	G>T	GCT	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG10347	exon	CG10347	FBgn0030342
A373R7	X	12212403	C	A	CCA	C>A	CCA	C>A	0.5	mutect2,strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
A373R7	X	12249560	T	C	CTT	T>C	CTT	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
A373R7	X	12280241	A	G	GAA	A>G	TTC	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
A373R7	X	12411283	G	T	CGG	G>T	CCG	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG32651	exon_5	CR32652	FBgn0052652
A373R7	X	12961388	G	T	TGC	G>T	GCA	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	hec	intergenic	intergenic	intergenic
A373R7	X	13112316	T	C	TTC	T>C	TTC	T>C	1.0	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG43313	5UTR	CG43313	FBgn0263005
A373R7	X	13131199	A	T	CAC	A>T	GTG	T>A	1.0	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	MFS10	5UTR	MFS10	FBgn0030452
A373R7	X	13159407	T	G	GTA	T>G	GTA	T>G	1.0	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Bap60	5UTR	Bap60	FBgn0025463
A373R7	X	13392539	G	A	TGC	G>A	GCA	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44620	intergenic	intergenic	intergenic
A373R7	X	13462673	C	T	ACG	C>T	ACG	C>T	0.158	freebayes	intron_variant	MODIFIER	Neto	intron	Neto	FBgn0265416
A373R7	X	13679231	C	A	GCC	C>A	GCC	C>A	0.5	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG12177	exon_2	CG12177	FBgn0030510
A373R7	X	13824233	C	T	GCT	C>T	GCT	C>T	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Clic	intron	Nup93-1	FBgn0027537
A373R7	X	13898211	T	C	CTT	T>C	CTT	T>C	0.667	somaticsniper,strelka,freebayes	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
A373R7	X	14313815	G	T	TGC	G>T	GCA	C>A	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	betaNACtes2	intergenic	intergenic	intergenic
A373R7	X	14369320	T	A	CTT	T>A	CTT	T>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	dpr8	intron	dpr8	FBgn0052600
A373R7	X	14503428	A	C	AAA	A>C	TTT	T>G	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CG12540-CR44110	intergenic	intergenic	intergenic
A373R7	X	14503430	A	G	AAG	A>G	CTT	T>C	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	CG12540-CR44110	intergenic	intergenic	intergenic
A373R7	X	15051149	G	T	TGG	G>T	CCA	C>A	0.333	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG5541	3UTR	CG5541	FBgn0030603
A373R7	X	15200395	T	C	CTA	T>C	CTA	T>C	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CG43737-CG32588	intergenic	intergenic	intergenic
A373R7	X	15314467	C	T	ACG	C>T	ACG	C>T	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44961	intron	gce	FBgn0261703
A373R7	X	15478961	A	C	GAC	A>C	GTC	T>G	0.6	somaticsniper,strelka	synonymous_variant	LOW	CG6324	exon_2	CG6324	FBgn0030647
A373R7	X	15541924	G	A	AGA	G>A	TCT	C>T	1.0	somaticsniper,strelka	intron_variant	MODIFIER	Ac13E	intron	Ac13E	FBgn0022710
A373R7	X	15680891	C	A	CCA	C>A	CCA	C>A	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG12708	intergenic	intergenic	intergenic
A373R7	X	15788219	A	T	CAT	A>T	ATG	T>A	1.0	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	mRpS30	3UTR	mRpS30	FBgn0030692
A373R7	X	16336439	T	C	ATG	T>C	ATG	T>C	0.667	somaticsniper,strelka	missense_variant	MODERATE	Dsp1	exon_3	Dsp1	FBgn0278608
A373R7	X	16575145	A	G	CAC	A>G	GTG	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CanA-14F	intron	CanA-14F	FBgn0267912
A373R7	X	16814811	C	A	GCC	C>A	GCC	C>A	0.5	mutect2,strelka	upstream_gene_variant	MODIFIER	CG4829	intron	CG4829	FBgn0030796
A373R7	X	17479582	A	G	AAC	A>G	GTT	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43658	intron	CG43658	FBgn0263706
A373R7	X	17685153	T	G	TTT	T>G	TTT	T>G	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	chas	intron	chas	FBgn0263258
A373R7	X	17694256	A	G	TAC	A>G	GTA	T>C	0.667	somaticsniper,strelka	splice_region_variant&intron_variant	LOW	chas	intron	chas	FBgn0263258
A373R7	X	17708655	G	A	AGT	G>A	ACT	C>T	0.667	somaticsniper,strelka	splice_region_variant&intron_variant	LOW	CG8173	intron	CG8173	FBgn0030864
A373R7	X	17730114	G	A	CGC	G>A	GCG	C>T	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG42684	intron	CG42684	FBgn0261570
A373R7	X	17842257	G	T	AGT	G>T	ACT	C>A	0.8	mutect2,somaticsniper,strelka,freebayes	5_prime_UTR_variant	MODIFIER	e(y)1	5UTR	e(y)1	FBgn0000617
A373R7	X	17869337	G	T	AGT	G>T	ACT	C>A	0.667	somaticsniper,strelka	missense_variant	MODERATE	mnb	exon_8	mnb	FBgn0259168
A373R7	X	18009496	T	C	TTG	T>C	TTG	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG12672	intron	Sh	FBgn0003380
A373R7	X	18167764	A	G	CAA	A>G	TTG	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	Frq1	intron	Frq1	FBgn0030897
A373R7	X	18260376	G	C	CGA	G>C	TCG	C>G	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45613	intergenic	intergenic	intergenic
A373R7	X	18325739	A	G	GAA	A>G	TTC	T>C	0.5	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG6123	3UTR	CG6123	FBgn0030913
A373R7	X	18362589	T	C	ATA	T>C	ATA	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CrebB	intergenic	intergenic	intergenic
A373R7	X	18466832	C	T	TCG	C>T	TCG	C>T	0.571	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43842	intron	CG32547	FBgn0052547
A373R7	X	18482362	A	T	CAA	A>T	TTG	T>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	Hayan	exon_3	Hayan	FBgn0030925
A373R7	X	18622114	C	A	TCC	C>A	TCC	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15040	intergenic	intergenic	intergenic
A373R7	X	18646884	A	C	AAA	A>C	TTT	T>G	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6540	intron	Rip11	FBgn0027335
A373R7	X	18809829	A	G	GAT	A>G	ATC	T>C	0.786	mutect2,somaticsniper	synonymous_variant	LOW	CG7058	exon_10	CG7058	FBgn0030961
A373R7	X	18859056	T	C	ATG	T>C	ATG	T>C	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG7288	exon_3	Usp39	FBgn0030969
A373R7	X	18995041	C	A	ACG	C>A	ACG	C>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG43759	intron	CG43759	FBgn0264090
A373R7	X	19123862	T	C	GTG	T>C	GTG	T>C	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG15882	exon	CG15882	FBgn0030983
A373R7	X	19234155	C	A	TCA	C>A	TCA	C>A	0.667	somaticsniper,strelka	synonymous_variant	LOW	CG7884	exon_2	CG7884	FBgn0031001
A373R7	X	19600605	T	C	GTG	T>C	GTG	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14207	intron	CG14220	FBgn0031036
A373R7	X	19703044	G	T	TGG	G>T	CCA	C>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	CG14232	exon_3	CG14232	FBgn0031061
A373R7	X	20005149	T	C	GTA	T>C	GTA	T>C	1.0	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Dop2R	3UTR	Dop2R	FBgn0053517
A373R7	X	20013120	A	G	TAC	A>G	GTA	T>C	0.667	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Dop2R	5UTR	Dop2R	FBgn0053517
A373R7	X	20097387	C	A	CCC	C>A	CCC	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	fd19B	intergenic	intergenic	intergenic
A373R7	X	20099167	A	G	CAG	A>G	CTG	T>C	0.667	somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG42581	intergenic	intergenic	intergenic
A373R7	X	20125776	C	A	CCC	C>A	CCC	C>A	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG34331	intergenic	intergenic	intergenic
A373R7	X	20719890	C	A	GCG	C>A	GCG	C>A	0.667	mutect2,strelka	intergenic_region	MODIFIER	run-CG1324	intergenic	intergenic	intergenic
A373R7	X	20847624	T	C	TTG	T>C	TTG	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	shakB	intron	shakB	FBgn0085387
A373R7	X	20891784	G	T	AGA	G>T	TCT	C>A	0.5	mutect2,strelka	intron_variant	MODIFIER	shakB	intron	shakB	FBgn0085387
A373R7	X	20926907	G	A	CGC	G>A	GCG	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	shakB	intron	shakB	FBgn0085387
A373R7	X	21038769	C	A	CCT	C>A	CCT	C>A	0.667	somaticsniper,strelka	synonymous_variant	LOW	Ntf-2	exon	Ntf-2	FBgn0031145
A373R7	X	21250972	G	A	TGC	G>A	GCA	C>T	0.667	somaticsniper,strelka	synonymous_variant	LOW	CG1722	exon	CG1722	FBgn0031168
A373R7	X	21431801	C	T	GCT	C>T	GCT	C>T	0.6	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG10918	intron	DIP-beta	FBgn0259245
A373R7	X	22694652	A	G	CAA	A>G	TTG	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CR44997	ncRNA	CR44997	FBgn0266348
A373R7	X	22985258	C	T	TCG	C>T	TCG	C>T	0.667	somaticsniper,strelka	intron_variant	MODIFIER	stnA	intron	stnA	FBgn0016976
A373R7	Y	196896	C	A	TCA	C>A	TCA	C>A	0.333	mutect2,strelka	upstream_gene_variant	MODIFIER	PRY	intergenic	intergenic	intergenic
A373R7	Y	655491	A	G	AAG	A>G	CTT	T>C	0.667	somaticsniper,strelka	missense_variant	MODERATE	kl-2	exon_6	kl-2	FBgn0001313
A373R7	Y	677106	G	C	CGA	G>C	TCG	C>G	1.0	somaticsniper,strelka	intergenic_region	MODIFIER	kl-2-ARY	intergenic	intergenic	intergenic
A373R9	2L	561795	T	G	TTT	T>G	TTT	T>G	0.151	somaticsniper,strelka	missense_variant	MODERATE	CG11835	exon	CG11835	FBgn0031264
A373R9	2L	4642172	C	T	CCA	C>T	CCA	C>T	0.265	mutect2,varscan2,somaticsniper,strelka,freebayes	stop_gained	HIGH	BG642163	exon	BG642163	FBgn0083938
A373R9	2L	6740777	T	G	TTT	T>G	TTT	T>G	0.217	somaticsniper,strelka	upstream_gene_variant	MODIFIER	TTLL3A	intergenic	intergenic	intergenic
A373R9	2L	8351635	G	A	CGT	G>A	ACG	C>T	0.217	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Mur29B	intergenic	intergenic	intergenic
A373R9	2L	10423011	T	C	ATA	T>C	ATA	T>C	0.19	somaticsniper,strelka	upstream_gene_variant	MODIFIER	pie	intergenic	intergenic	intergenic
A373R9	2L	10749160	T	G	ATA	T>G	ATA	T>G	0.258	somaticsniper,strelka	intron_variant	MODIFIER	CG17124	intron	CG17124	FBgn0032297
A373R9	2L	14380351	A	T	GAG	A>T	CTC	T>A	0.184	somaticsniper,strelka	synonymous_variant	LOW	ppk	exon_3	ppk	FBgn0020258
A373R9	2L	14679219	A	T	TAG	A>T	CTA	T>A	0.0588	mutect2,strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
A373R9	2L	15272637	C	A	ACA	C>A	ACA	C>A	0.238	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cul3	intergenic	intergenic	intergenic
A373R9	2L	15272638	A	T	CAA	A>T	TTG	T>A	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cul3	intergenic	intergenic	intergenic
A373R9	2L	16583822	T	A	TTT	T>A	TTT	T>A	0.286	somaticsniper,strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
A373R9	2L	22960333	G	A	TGT	G>A	ACA	C>T	0.122	somaticsniper,strelka	intergenic_region	MODIFIER	CR40005-cta	intergenic	intergenic	intergenic
A373R9	2R	2688482	T	G	TTA	T>G	TTA	T>G	0.343	somaticsniper,strelka	intergenic_region	MODIFIER	MFS17-CG41378	intergenic	intergenic	intergenic
A373R9	2R	12279169	G	T	AGT	G>T	ACT	C>A	0.278	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG42700	intergenic	intergenic	intergenic
A373R9	2R	12698452	A	G	AAC	A>G	GTT	T>C	0.167	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	wuc	intergenic	intergenic	intergenic
A373R9	2R	14419806	C	T	GCT	C>T	GCT	C>T	0.261	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG17386	intergenic	intergenic	intergenic
A373R9	2R	20432906	C	A	GCC	C>A	GCC	C>A	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	CG12484	intron	CG12484	FBgn0086604
A373R9	2R	21118339	T	G	ATC	T>G	ATC	T>G	0.233	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG9394	intron	ktub	FBgn0015721
A373R9	2R	24138467	C	G	ACT	C>G	ACT	C>G	0.171	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tamo	intergenic	intergenic	intergenic
A373R9	3L	2577967	T	A	GTG	T>A	GTG	T>A	0.288	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	msn	intron	msn	FBgn0010909
A373R9	3L	2794027	T	C	GTT	T>C	GTT	T>C	0.2	varscan2,somaticsniper	synonymous_variant	LOW	Tet	exon_6	Tet	FBgn0263392
A373R9	3L	5271593	T	C	GTT	T>C	GTT	T>C	0.222	varscan2,somaticsniper	5_prime_UTR_variant	MODIFIER	shep	exon_1	shep	FBgn0052423
A373R9	3L	8919437	A	G	CAC	A>G	GTG	T>C	0.217	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43970	intron	Tsp66E	FBgn0035936
A373R9	3L	10650707	A	C	GAT	A>C	ATC	T>G	0.19	somaticsniper,strelka	intron_variant	MODIFIER	CG32066	intron	CG32066	FBgn0052066
A373R9	3L	10650708	T	C	ATG	T>C	ATG	T>C	0.19	somaticsniper,strelka	intron_variant	MODIFIER	CG32066	intron	CG32066	FBgn0052066
A373R9	3L	11221453	G	A	TGC	G>A	GCA	C>T	0.308	varscan2,strelka	intron_variant	MODIFIER	CG42671	intron	CG42671	FBgn0261553
A373R9	3L	11404058	T	C	GTG	T>C	GTG	T>C	0.305	varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CR44363	intergenic	intergenic	intergenic
A373R9	3L	12883941	T	A	TTG	T>A	TTG	T>A	0.182	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14120	intergenic	intergenic	intergenic
A373R9	3L	13677201	G	A	CGG	G>A	CCG	C>T	0.174	varscan2,somaticsniper	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A373R9	3R	2832995	C	A	ACC	C>A	ACC	C>A	0.25	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A373R9	3R	8173050	C	T	GCA	C>T	GCA	C>T	0.075	mutect2,strelka	intron_variant	MODIFIER	grn	intron	grn	FBgn0001138
A373R9	3R	18303542	G	T	TGG	G>T	CCA	C>A	0.163	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	PKD	3UTR	PKD	FBgn0038603
A373R9	3R	22567794	A	T	AAC	A>T	GTT	T>A	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33110	intergenic	intergenic	intergenic
A373R9	3R	22567795	C	T	ACG	C>T	ACG	C>T	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33110	intergenic	intergenic	intergenic
A373R9	3R	25411528	C	T	GCC	C>T	GCC	C>T	0.222	varscan2,somaticsniper	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
A373R9	3R	29520868	G	T	AGC	G>T	GCT	C>A	0.245	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG2014	intergenic	intergenic	intergenic
A373R9	3R	29957504	G	T	TGA	G>T	TCA	C>A	0.174	varscan2,somaticsniper	intron_variant	MODIFIER	TkR99D	intron	TkR99D	FBgn0004622
A373R9	3R	30098451	G	A	TGT	G>A	ACA	C>T	0.333	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	sima	intron	sima	FBgn0266411
A373R9	4	156511	G	C	TGG	G>C	CCA	C>G	0.19	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31997	intergenic	intergenic	intergenic
A373R9	4	975262	T	C	CTA	T>C	CTA	T>C	0.0635	mutect2,strelka	5_prime_UTR_premature_start_codon_gain_variant	LOW	fuss	exon_1	sphinx	FBgn0083990
A373R9	X	5432326	T	C	ATG	T>C	ATG	T>C	0.182	varscan2,somaticsniper	synonymous_variant	LOW	CG15784	exon	CG15784	FBgn0029766
A373R9	X	8802754	C	T	ACG	C>T	ACG	C>T	0.19	varscan2,somaticsniper	intron_variant	MODIFIER	Lim1	intron	Lim1	FBgn0026411
A373R9	X	16617402	T	G	TTT	T>G	TTT	T>G	0.308	somaticsniper,strelka	downstream_gene_variant	MODIFIER	mbt	intron	CG9782	FBgn0030763
A373R9	X	17390772	T	C	GTT	T>C	GTT	T>C	0.37	freebayes	intergenic_region	MODIFIER	CR43491-B-H1	intergenic	intergenic	intergenic
A373R9	X	19769703	T	C	ATC	T>C	ATC	T>C	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG12702	intron	zld	FBgn0259789
A373R9	Y	36242	G	T	TGT	G>T	ACA	C>A	0.478	somaticsniper,strelka	intron_variant	MODIFIER	kl-5	intron	kl-5	FBgn0267433
A512R17	2L	2477174	G	T	GGC	G>T	GCC	C>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45286	intergenic	intergenic	intergenic
A512R17	2L	2477722	A	G	CAA	A>G	TTG	T>C	1.0	somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CR45286	intergenic	intergenic	intergenic
A512R17	2L	3941177	C	T	GCA	C>T	GCA	C>T	0.667	somaticsniper,strelka	intron_variant	MODIFIER	fred	intron	fred	FBgn0051774
A512R17	2L	4968208	G	A	TGA	G>A	TCA	C>T	0.667	somaticsniper,strelka	synonymous_variant	LOW	Scox	exon	Scox	FBgn0262467
A512R17	2L	5183187	G	A	TGT	G>A	ACA	C>T	1.0	somaticsniper,strelka	missense_variant	MODERATE	Msp300	exon_6	Msp300	FBgn0261836
A512R17	2L	6883281	A	G	AAC	A>G	GTT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Nlg2	intron	Nlg2	FBgn0031866
A512R17	2L	7224995	T	C	CTT	T>C	CTT	T>C	0.5	freebayes	synonymous_variant	LOW	Ndae1	exon	Ndae1	FBgn0259111
A512R17	2L	11712973	A	G	GAA	A>G	TTC	T>C	0.273	somaticsniper,strelka	intergenic_region	MODIFIER	CG4988-CR44143	intergenic	intergenic	intergenic
A512R17	2L	12115199	C	A	CCA	C>A	CCA	C>A	0.333	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	Phae1	intron	CG17211	FBgn0032414
A512R17	2L	15413949	A	G	AAA	A>G	TTT	T>C	0.375	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG44869	intergenic	intergenic	intergenic
A512R17	2L	17286519	G	T	GGA	G>T	TCC	C>A	0.222	mutect2,somaticsniper,strelka	synonymous_variant	LOW	CG15140	exon_2	CG15140	FBgn0032631
A512R17	2L	17286862	A	T	GAC	A>T	GTC	T>A	0.3	somaticsniper,strelka	synonymous_variant	LOW	CG15140	exon	CG15140	FBgn0032631
A512R17	2L	17286866	A	T	GAA	A>T	TTC	T>A	0.273	somaticsniper,strelka	missense_variant	MODERATE	CG15140	exon	CG15140	FBgn0032631
A512R17	2L	17873006	T	C	TTC	T>C	TTC	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CadN2	intron	CadN2	FBgn0262018
A512R17	2R	925740	G	A	TGA	G>A	TCA	C>T	0.364	somaticsniper,strelka,freebayes	3_prime_UTR_variant	MODIFIER	CG40498	3UTR	CG40498	FBgn0069969
A512R17	2R	1440108	A	T	CAG	A>T	CTG	T>A	0.4	somaticsniper,strelka	intron_variant	MODIFIER	l(2)41Ab	intron	l(2)41Ab	FBgn0262123
A512R17	2R	1887787	G	A	GGA	G>A	TCC	C>T	0.231	somaticsniper,strelka	intron_variant	MODIFIER	CG17684	intron	CG17684	FBgn0263780
A512R17	2R	5632914	C	A	CCC	C>A	CCC	C>A	0.5	freebayes	intergenic_region	MODIFIER	CG17508-CG11665	intergenic	intergenic	intergenic
A512R17	2R	7423039	A	G	GAC	A>G	GTC	T>C	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44202	intron	so	FBgn0003460
A512R17	2R	9192418	C	A	CCT	C>A	CCT	C>A	0.5	freebayes	upstream_gene_variant	MODIFIER	CG8026	intergenic	intergenic	intergenic
A512R17	2R	11277329	A	G	CAT	A>G	ATG	T>C	0.25	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cpr47Ef	intergenic	intergenic	intergenic
A512R17	2R	11277347	C	T	ACG	C>T	ACG	C>T	0.2	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cpr47Ef	intergenic	intergenic	intergenic
A512R17	2R	11873360	C	A	CCA	C>A	CCA	C>A	0.5	mutect2,somaticsniper,strelka	missense_variant	MODERATE	CG13185	exon_8	CG13185	FBgn0033661
A512R17	2R	11915745	G	T	CGA	G>T	TCG	C>A	0.2	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG13183	intergenic	intergenic	intergenic
A512R17	2R	13852611	T	G	GTT	T>G	GTT	T>G	0.444	mutect2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	CG30485	exon	CG30485	FBgn0050485
A512R17	2R	14128810	C	A	ACG	C>A	ACG	C>A	0.625	somaticsniper,strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
A512R17	2R	15425916	C	T	GCG	C>T	GCG	C>T	0.25	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG43729	5UTR	CG43729	FBgn0263980
A512R17	2R	15593842	C	A	TCG	C>A	TCG	C>A	0.176	mutect2,strelka	intergenic_region	MODIFIER	CG8204-CG42524	intergenic	intergenic	intergenic
A512R17	2R	16426458	T	C	CTT	T>C	CTT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Sema-2b	intron	Sema-2b	FBgn0264273
A512R17	2R	17988294	T	C	CTT	T>C	CTT	T>C	0.5	freebayes	intron_variant	MODIFIER	dpr13	intron	dpr13	FBgn0034286
A512R17	2R	22047318	C	G	TCT	C>G	TCT	C>G	0.333	somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	PpD5	intergenic	intergenic	intergenic
A512R17	3L	1273472	C	T	CCG	C>T	CCG	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG32333	intron	tfc	FBgn0035199
A512R17	3L	2115113	T	C	CTG	T>C	CTG	T>C	0.5	freebayes	upstream_gene_variant	MODIFIER	CR45802	intron	sls	FBgn0086906
A512R17	3L	4779014	T	C	TTC	T>C	TTC	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	RhoGEF64C	intron	RhoGEF64C	FBgn0035574
A512R17	3L	7128011	C	T	TCA	C>T	TCA	C>T	0.385	varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	CG8629	exon	CG8629	FBgn0035742
A512R17	3L	7128029	G	A	CGG	G>A	CCG	C>T	0.308	somaticsniper,strelka	synonymous_variant	LOW	CG8629	exon	CG8629	FBgn0035742
A512R17	3L	7128032	A	C	CAT	A>C	ATG	T>G	0.308	somaticsniper,strelka	missense_variant	MODERATE	CG8629	exon	CG8629	FBgn0035742
A512R17	3L	7878933	T	C	ATG	T>C	ATG	T>C	0.375	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CG32365	intron	CG32365	FBgn0052365
A512R17	3L	9483369	C	A	GCC	C>A	GCC	C>A	0.375	mutect2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	Jarid2	exon_2	Jarid2	FBgn0036004
A512R17	3L	15833202	G	C	TGA	G>C	TCA	C>G	0.667	somaticsniper,strelka	missense_variant	MODERATE	CG12713	exon_2	CG12713	FBgn0036536
A512R17	3L	19246786	C	A	CCT	C>A	CCT	C>A	0.286	mutect2,somaticsniper,strelka	intergenic_region	MODIFIER	CR43892-mRpL21	intergenic	intergenic	intergenic
A512R17	3L	21535134	T	C	ATA	T>C	ATA	T>C	0.5	freebayes	missense_variant	MODERATE	ppk5	exon_3	ppk5	FBgn0053289
A512R17	3L	23177426	G	T	AGT	G>T	ACT	C>A	0.273	somaticsniper,strelka	intron_variant	MODIFIER	CG34031	intron	CG34031	FBgn0054031
A512R17	3L	26520519	G	C	TGT	G>C	ACA	C>G	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A512R17	3R	37084	C	A	ACC	C>A	ACC	C>A	0.267	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A512R17	3R	1846522	A	G	TAA	A>G	TTA	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R17	3R	2502279	A	G	AAT	A>G	ATT	T>C	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R17	3R	2891882	A	G	AAG	A>G	CTT	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A512R17	3R	4783004	G	T	CGG	G>T	CCG	C>A	0.176	mutect2,strelka	synonymous_variant	LOW	CG17387	exon_3	CG17387	FBgn0037276
A512R17	3R	6798907	G	T	CGC	G>T	GCG	C>A	0.667	somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Dfd	intron	Dfd	FBgn0000439
A512R17	3R	8510102	A	G	CAG	A>G	CTG	T>C	0.5	freebayes	missense_variant	MODERATE	Or85b	exon	Or85b	FBgn0037590
A512R17	3R	9967320	C	A	GCT	C>A	GCT	C>A	0.231	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
A512R17	3R	13605836	T	A	GTA	T>A	GTA	T>A	1.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG9759	intergenic	intergenic	intergenic
A512R17	3R	15426888	G	T	CGG	G>T	CCG	C>A	0.286	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG6118	exon_1	CG6118	FBgn0038339
A512R17	3R	16062179	C	A	ACG	C>A	ACG	C>A	1.0	somaticsniper,strelka	missense_variant	MODERATE	CG10185	exon_11	CG10185	FBgn0038397
A512R17	3R	16970242	A	G	GAC	A>G	GTC	T>C	0.5	freebayes	upstream_gene_variant	MODIFIER	VhaM9.7-d	intron	Abd-B	FBgn0000015
A512R17	3R	17274611	G	T	CGG	G>T	CCG	C>A	0.12	mutect2,strelka	upstream_gene_variant	MODIFIER	CR44258	intergenic	intergenic	intergenic
A512R17	3R	17428001	C	T	CCG	C>T	CCG	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR46052	intron	cysu	FBgn0038511
A512R17	3R	18493030	T	C	CTG	T>C	CTG	T>C	0.667	somaticsniper,strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
A512R17	3R	18982196	G	A	TGC	G>A	GCA	C>T	0.667	somaticsniper,strelka	synonymous_variant	LOW	dnk	exon_2	dnk	FBgn0022338
A512R17	3R	20976876	G	T	CGA	G>T	TCG	C>A	0.273	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Calx	intergenic	intergenic	intergenic
A512R17	3R	22594715	A	G	CAC	A>G	GTG	T>C	0.227	varscan2,somaticsniper	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
A512R17	3R	22594720	T	C	ATA	T>C	ATA	T>C	0.182	varscan2,somaticsniper	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
A512R17	3R	23525102	G	A	TGC	G>A	GCA	C>T	0.667	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG10175	5UTR	CG10175	FBgn0039084
A512R17	3R	23578104	G	T	GGG	G>T	CCC	C>A	0.385	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	beat-IV	intron	beat-IV	FBgn0039089
A512R17	3R	24976663	G	T	AGG	G>T	CCT	C>A	0.667	somaticsniper,strelka	intergenic_region	MODIFIER	CG13646-tnc	intergenic	intergenic	intergenic
A512R17	3R	28969641	G	T	AGC	G>T	GCT	C>A	0.5	mutect2,strelka	5_prime_UTR_premature_start_codon_gain_variant	LOW	CG14521	exon_1	DIP-gamma	FBgn0039617
A512R17	3R	29941228	A	T	AAA	A>T	TTT	T>A	0.25	mutect2,strelka	stop_gained	HIGH	CG15523	exon_6	Vps13B	FBgn0039727
A512R17	3R	30891807	C	T	ACT	C>T	ACT	C>T	0.5	freebayes	upstream_gene_variant	MODIFIER	Sap-r	intergenic	intergenic	intergenic
A512R17	4	600193	A	T	GAT	A>T	ATC	T>A	0.5	freebayes	3_prime_UTR_variant	MODIFIER	onecut	3UTR	onecut	FBgn0028996
A512R17	X	887578	T	C	GTA	T>C	GTA	T>C	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43867	intron	CG43867	FBgn0264449
A512R17	X	2790705	G	A	AGC	G>A	GCT	C>T	0.613	mutect2,varscan2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	w	3UTR	w	FBgn0003996
A512R17	X	2796360	A	C	CAC	A>C	GTG	T>G	0.512	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	w	5UTR	w	FBgn0003996
A512R17	X	2796361	C	A	ACC	C>A	ACC	C>A	0.512	varscan2,somaticsniper,strelka	5_prime_UTR_premature_start_codon_gain_variant	LOW	w	5UTR	w	FBgn0003996
A512R17	X	16361446	T	G	CTG	T>G	CTG	T>G	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	U2af50	intergenic	intergenic	intergenic
A512R17	X	21077975	T	A	ATG	T>A	ATG	T>A	0.667	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	bves	3UTR	bves	FBgn0031150
A512R17	Y	945533	G	A	TGC	G>A	GCA	C>T	0.312	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Su(Ste):CR42428	intergenic	intergenic	intergenic
A512R19	2L	4648532	G	A	CGA	G>A	TCG	C>T	0.312	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG3355	intergenic	intergenic	intergenic
A512R19	2L	5443111	A	C	CAT	A>C	ATG	T>G	0.318	freebayes	upstream_gene_variant	MODIFIER	CR31647	intergenic	intergenic	intergenic
A512R19	2L	9857697	G	A	AGA	G>A	TCT	C>T	0.278	varscan2,strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
A512R19	2L	12409191	G	A	TGT	G>A	ACA	C>T	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	vir-1	intron	vir-1	FBgn0043841
A512R19	2L	17455354	A	C	GAT	A>C	ATC	T>G	0.167	varscan2,strelka	missense_variant	MODERATE	SPH93	exon	SPH93	FBgn0032638
A512R19	2L	20483842	C	A	CCA	C>A	CCA	C>A	0.211	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR43234	ncRNA	CR44980	FBgn0266315
A512R19	2R	1536378	G	T	AGA	G>T	TCT	C>A	0.31	somaticsniper,strelka	intergenic_region	MODIFIER	Maf1-CG17691	intergenic	intergenic	intergenic
A512R19	2R	1536379	A	G	GAT	A>G	ATC	T>C	0.286	somaticsniper,strelka	intergenic_region	MODIFIER	Maf1-CG17691	intergenic	intergenic	intergenic
A512R19	2R	7770236	A	C	GAT	A>C	ATC	T>G	0.273	somaticsniper,strelka	intron_variant	MODIFIER	CG30497	intron	CG45093	FBgn0266526
A512R19	2R	9327765	G	A	CGC	G>A	GCG	C>T	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	CG13739	intron	CG13954	FBgn0033405
A512R19	2R	10200861	G	A	AGC	G>A	GCT	C>T	0.524	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG34221	intergenic	intergenic	intergenic
A512R19	2R	10200862	C	G	GCT	C>G	GCT	C>G	0.524	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG34221	intergenic	intergenic	intergenic
A512R19	2R	11393621	G	A	CGA	G>A	TCG	C>T	0.0889	mutect2,strelka	upstream_gene_variant	MODIFIER	CG30022	intron	sprt	FBgn0082585
A512R19	2R	20468795	C	A	GCC	C>A	GCC	C>A	0.2	mutect2,strelka	splice_region_variant&intron_variant	LOW	CG12484	intron	CG12484	FBgn0086604
A512R19	2R	22306292	T	C	TTG	T>C	TTG	T>C	0.167	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	wdp	intron	wdp	FBgn0034718
A512R19	2R	22382965	C	T	TCT	C>T	TCT	C>T	0.182	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45327	intergenic	intergenic	intergenic
A512R19	3L	977042	C	A	CCC	C>A	CCC	C>A	0.167	somaticsniper,strelka	intron_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
A512R19	3L	977043	C	A	CCA	C>A	CCA	C>A	0.167	somaticsniper,strelka	intron_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
A512R19	3L	2836437	A	G	GAA	A>G	TTC	T>C	0.375	somaticsniper,strelka	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A512R19	3L	2855200	T	A	ATT	T>A	ATT	T>A	0.267	varscan2,somaticsniper	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A512R19	3L	4324657	A	T	TAT	A>T	ATA	T>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15014	intron	Cip4	FBgn0035533
A512R19	3L	12445697	C	T	ACT	C>T	ACT	C>T	0.25	varscan2,somaticsniper	intergenic_region	MODIFIER	toe-eyg	intergenic	intergenic	intergenic
A512R19	3L	15972097	A	T	AAA	A>T	TTT	T>A	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	l(3)72Ab	intron	brm	FBgn0000212
A512R19	3L	19788051	A	G	AAA	A>G	TTT	T>C	0.182	somaticsniper,strelka	intron_variant	MODIFIER	CG42637	intron	Gyc76C	FBgn0266136
A512R19	3L	20670578	C	T	ACG	C>T	ACG	C>T	0.19	mutect2,somaticsniper,strelka	intergenic_region	MODIFIER	CR44685-kni	intergenic	intergenic	intergenic
A512R19	3L	21994294	T	A	ATC	T>A	ATC	T>A	0.15	mutect2,strelka	intergenic_region	MODIFIER	Act79B-CG7140	intergenic	intergenic	intergenic
A512R19	3L	24709680	C	T	TCT	C>T	TCT	C>T	0.324	somaticsniper,strelka	intergenic_region	MODIFIER	CR41597-scro	intergenic	intergenic	intergenic
A512R19	3R	2181561	C	G	ACT	C>G	ACT	C>G	0.222	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R19	3R	6307523	A	G	GAA	A>G	TTC	T>C	0.222	somaticsniper,strelka	missense_variant	MODERATE	CG46026	exon	CG46026	FBgn0267690
A512R19	3R	8133550	A	G	GAC	A>G	GTC	T>C	0.136	mutect2,strelka	downstream_gene_variant	MODIFIER	Gie	intergenic	intergenic	intergenic
A512R19	3R	9134153	A	C	CAT	A>C	ATG	T>G	0.333	somaticsniper,strelka	intron_variant	MODIFIER	pum	intron	pum	FBgn0003165
A512R19	3R	13820282	T	G	CTT	T>G	CTT	T>G	0.207	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43641	intergenic	intergenic	intergenic
A512R19	3R	26552085	A	T	GAA	A>T	TTC	T>A	0.267	somaticsniper,strelka	intron_variant	MODIFIER	scrib	intron	scrib	FBgn0263289
A512R19	3R	31363007	A	G	AAA	A>G	TTT	T>C	0.222	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CG34347	intron	CG34347	FBgn0085376
A512R19	X	2910932	T	A	CTT	T>A	CTT	T>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A512R19	X	8369603	G	C	TGC	G>C	GCA	C>G	0.238	somaticsniper,strelka	upstream_gene_variant	MODIFIER	nAChRalpha3	intergenic	intergenic	intergenic
A512R19	X	10598380	G	A	CGC	G>A	GCG	C>T	1.0	somaticsniper,strelka,freebayes	missense_variant	MODERATE	CG2124	3UTR	CG1628	FBgn0030218
A512R21	2L	516508	G	A	TGT	G>A	ACA	C>T	0.19	varscan2,somaticsniper	intron_variant	MODIFIER	ush	intron	ush	FBgn0003963
A512R21	2L	2735627	T	C	GTG	T>C	GTG	T>C	0.267	freebayes	upstream_gene_variant	MODIFIER	mir-4914	intron	CG31689	FBgn0031449
A512R21	2L	2873547	C	A	CCA	C>A	CCA	C>A	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG8814	intron	CG31694	FBgn0051694
A512R21	2L	3180979	T	A	ATG	T>A	ATG	T>A	0.333	varscan2,somaticsniper	intron_variant	MODIFIER	CG34393	intron	CG34393	FBgn0085422
A512R21	2L	6011141	G	T	GGA	G>T	TCC	C>A	0.115	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG9098	exon_1	CG9098	FBgn0031762
A512R21	2L	6872116	C	A	CCG	C>A	CCG	C>A	0.158	mutect2,strelka	splice_region_variant&non_coding_transcript_exon_variant	LOW	CR44915	exon_1	CR44915	FBgn0266220
A512R21	2L	7007774	T	C	ATG	T>C	ATG	T>C	0.22	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG43321	intron	uif	FBgn0031879
A512R21	2L	7152851	T	G	TTT	T>G	TTT	T>G	0.378	somaticsniper,strelka	intron_variant	MODIFIER	Pvf3	intron	Pvf3	FBgn0085407
A512R21	2L	12053113	C	A	ACC	C>A	ACC	C>A	0.538	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Plzf	intron	JhI-21	FBgn0028425
A512R21	2L	12053114	C	G	CCG	C>G	CCG	C>G	0.538	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Plzf	intron	JhI-21	FBgn0028425
A512R21	2L	12959242	C	A	ACA	C>A	ACA	C>A	0.292	varscan2,somaticsniper	intergenic_region	MODIFIER	CR44183-CG16800	intergenic	intergenic	intergenic
A512R21	2L	14359136	T	A	ATT	T>A	ATT	T>A	0.474	somaticsniper,strelka	upstream_gene_variant	MODIFIER	l(2)34Fd	intergenic	intergenic	intergenic
A512R21	2L	14359137	T	C	TTT	T>C	TTT	T>C	0.474	somaticsniper,strelka	upstream_gene_variant	MODIFIER	l(2)34Fd	intergenic	intergenic	intergenic
A512R21	2L	15068757	T	C	TTC	T>C	TTC	T>C	0.211	somaticsniper,strelka	missense_variant	MODERATE	vas	intron	vig	FBgn0024183
A512R21	2L	15812865	G	A	TGG	G>A	CCA	C>T	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44602	intergenic	intergenic	intergenic
A512R21	2R	3205413	G	A	CGA	G>A	TCG	C>T	0.222	somaticsniper,strelka	intergenic_region	MODIFIER	CG42596-CR41243	intergenic	intergenic	intergenic
A512R21	2R	3205435	C	A	ACA	C>A	ACA	C>A	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	CG42596-CR41243	intergenic	intergenic	intergenic
A512R21	2R	4848290	T	C	TTG	T>C	TTG	T>C	0.385	somaticsniper,strelka	intergenic_region	MODIFIER	CG14464-CG44102	intergenic	intergenic	intergenic
A512R21	2R	5430951	C	G	TCT	C>G	TCT	C>G	0.6	somaticsniper,strelka	intron_variant	MODIFIER	laccase2	intron	laccase2	FBgn0259247
A512R21	2R	8634455	G	A	AGA	G>A	TCT	C>T	0.304	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG8635	intergenic	intergenic	intergenic
A512R21	2R	12296479	G	C	GGC	G>C	GCC	C>G	0.364	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45271	intron	CG42700	FBgn0261611
A512R21	2R	12320872	T	C	TTA	T>C	TTA	T>C	0.231	somaticsniper,strelka	splice_region_variant&intron_variant	LOW	CR44316	ncRNA	CR44316	FBgn0265375
A512R21	2R	12402463	C	A	TCA	C>A	TCA	C>A	0.3	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cpr49Af	intron	Cpr49Ae	FBgn0033728
A512R21	2R	12564341	T	C	CTG	T>C	CTG	T>C	0.143	mutect2,strelka	synonymous_variant	LOW	CG33775	exon	CG33775	FBgn0053775
A512R21	2R	14383792	A	T	AAG	A>T	CTT	T>A	0.167	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Dh44-R1	intron	Dh44-R1	FBgn0033932
A512R21	2R	19792556	T	C	ATC	T>C	ATC	T>C	0.227	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR45231	intergenic	intergenic	intergenic
A512R21	2R	25072696	G	T	GGG	G>T	CCC	C>A	0.294	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	gol	3UTR	gol	FBgn0004919
A512R21	2R	25072697	G	C	GGT	G>C	ACC	C>G	0.294	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	gol	3UTR	gol	FBgn0004919
A512R21	3L	934360	G	A	GGC	G>A	GCC	C>T	0.231	varscan2,somaticsniper	intron_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
A512R21	3L	2221376	C	T	TCT	C>T	TCT	C>T	0.217	somaticsniper,strelka	intergenic_region	MODIFIER	CG15878-Oseg2	intergenic	intergenic	intergenic
A512R21	3L	3440073	T	C	ATC	T>C	ATC	T>C	0.25	somaticsniper,strelka	intron_variant	MODIFIER	eIF5B	intron	eIF5B	FBgn0026259
A512R21	3L	4656913	A	C	GAC	A>C	GTC	T>G	0.261	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45830	intron	axo	FBgn0262870
A512R21	3L	5297914	A	T	GAT	A>T	ATC	T>A	0.263	mutect2,strelka	intergenic_region	MODIFIER	shep-CR45741	intergenic	intergenic	intergenic
A512R21	3L	6233360	C	A	GCG	C>A	GCG	C>A	0.267	freebayes	5_prime_UTR_variant	MODIFIER	BG642312	exon_1	BG642312	FBgn0047334
A512R21	3L	8845652	T	G	ATG	T>G	ATG	T>G	0.208	somaticsniper,strelka	intron_variant	MODIFIER	dally	ncRNA	CR45823	FBgn0267473
A512R21	3L	12230195	A	G	CAA	A>G	TTG	T>C	0.12	mutect2,strelka	intron_variant	MODIFIER	app	intron	app	FBgn0260941
A512R21	3L	12481150	G	A	TGC	G>A	GCA	C>T	0.174	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33725	intron	CG10663	FBgn0036287
A512R21	3L	12687404	T	A	CTA	T>A	CTA	T>A	0.176	varscan2,somaticsniper	intergenic_region	MODIFIER	CR44552-mirr	intergenic	intergenic	intergenic
A512R21	3L	13256550	G	T	TGC	G>T	GCA	C>A	0.2	varscan2,somaticsniper	intron_variant	MODIFIER	caps	intron	caps	FBgn0023095
A512R21	3L	15343752	A	T	CAA	A>T	TTG	T>A	0.214	mutect2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Toll-6	3UTR	Toll-6	FBgn0036494
A512R21	3L	16310045	T	G	TTT	T>G	TTT	T>G	0.222	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13043	exon_2	CR32160	FBgn0052160
A512R21	3L	18433287	C	T	ACC	C>T	ACC	C>T	0.213	varscan2,somaticsniper	intergenic_region	MODIFIER	rpr-skl	intergenic	intergenic	intergenic
A512R21	3L	18433290	T	G	ATC	T>G	ATC	T>G	0.213	varscan2,somaticsniper	intergenic_region	MODIFIER	rpr-skl	intergenic	intergenic	intergenic
A512R21	3L	18690891	A	G	AAG	A>G	CTT	T>C	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cyp12c1	intergenic	intergenic	intergenic
A512R21	3L	20061730	T	A	TTG	T>A	TTG	T>A	0.2	mutect2,strelka	intron_variant	MODIFIER	sNPF-R	intron	sNPF-R	FBgn0036934
A512R21	3L	20724721	A	G	AAG	A>G	CTT	T>C	0.136	mutect2,strelka	downstream_gene_variant	MODIFIER	CR43945	intergenic	intergenic	intergenic
A512R21	3L	23064580	G	A	AGC	G>A	GCT	C>T	0.191	somaticsniper,strelka	intergenic_region	MODIFIER	nrm-RpL10	intergenic	intergenic	intergenic
A512R21	3R	4592847	T	G	CTT	T>G	CTT	T>G	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45558	intergenic	intergenic	intergenic
A512R21	3R	4592848	T	G	TTC	T>G	TTC	T>G	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45558	intergenic	intergenic	intergenic
A512R21	3R	8540072	T	A	CTA	T>A	CTA	T>A	0.172	mutect2,somaticsniper,strelka	intergenic_region	MODIFIER	CG11741-CR45575	intergenic	intergenic	intergenic
A512R21	3R	13938417	T	C	CTT	T>C	CTT	T>C	0.182	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Art9	intergenic	intergenic	intergenic
A512R21	3R	14353463	C	T	TCG	C>T	TCG	C>T	0.16	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG31320	intron	NK7.1	FBgn0024321
A512R21	3R	20101118	A	G	CAG	A>G	CTG	T>C	0.267	freebayes	intergenic_region	MODIFIER	Rh3-CG31206	intergenic	intergenic	intergenic
A512R21	3R	20702288	C	T	GCC	C>T	GCC	C>T	0.158	mutect2,strelka	intron_variant	MODIFIER	Oamb	intron	Oamb	FBgn0024944
A512R21	X	3067157	T	A	GTG	T>A	GTG	T>A	0.231	somaticsniper,strelka	missense_variant	MODERATE	CG4116	exon	CG4116	FBgn0029649
A512R21	X	4904555	A	T	GAA	A>T	TTC	T>A	0.231	mutect2,varscan2,somaticsniper,strelka	missense_variant	MODERATE	CG42594	exon	CG42594	FBgn0260971
A512R21	X	6285515	C	G	TCA	C>G	TCA	C>G	0.227	somaticsniper,strelka	missense_variant	MODERATE	Top3beta	exon_3	Top3beta	FBgn0026015
A512R21	X	11211689	T	C	CTT	T>C	CTT	T>C	0.214	somaticsniper,strelka	intergenic_region	MODIFIER	CG11106-CG44422	intergenic	intergenic	intergenic
A512R21	X	22829279	T	C	CTG	T>C	CTG	T>C	0.211	mutect2,somaticsniper,strelka	splice_acceptor_variant&intron_variant	HIGH	fog	intron	fog	FBgn0000719
A512R23	2L	4116693	G	A	CGC	G>A	GCG	C>T	0.185	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Sr-CIII	intergenic	intergenic	intergenic
A512R23	2L	4555748	T	A	CTT	T>A	CTT	T>A	0.0843	mutect2,strelka	missense_variant	MODERATE	dp	exon_8	dpy	FBgn0053196
A512R23	2L	6593489	T	C	CTA	T>C	CTA	T>C	0.22	somaticsniper,strelka	intron_variant	MODIFIER	CG11319	intron	CG11319	FBgn0031835
A512R23	2L	10457222	G	A	TGG	G>A	CCA	C>T	0.452	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG5322	exon_1	LManI	FBgn0032253
A512R23	2L	10457223	G	A	GGT	G>A	ACC	C>T	0.455	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG5322	exon_1	LManI	FBgn0032253
A512R23	2L	16026080	G	T	AGC	G>T	GCT	C>A	0.238	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	beat-Ic	intron	beat-Ic	FBgn0028644
A512R23	2L	18633458	G	T	TGC	G>T	GCA	C>A	0.25	somaticsniper,strelka	intron_variant	MODIFIER	MESR3	intron	MESR3	FBgn0032694
A512R23	2L	19518932	T	A	ATA	T>A	ATA	T>A	0.286	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG10132	exon_1	CG10132	FBgn0032798
A512R23	2R	4874728	G	C	GGG	G>C	CCC	C>G	0.169	somaticsniper,strelka	intergenic_region	MODIFIER	CG14464-CG44102	intergenic	intergenic	intergenic
A512R23	2R	7096140	C	T	TCG	C>T	TCG	C>T	0.137	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	esn	intron	esn	FBgn0263934
A512R23	2R	7457758	A	T	CAC	A>T	GTG	T>A	0.235	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG11141	intron	Inos	FBgn0025885
A512R23	2R	12296479	G	C	GGC	G>C	GCC	C>G	0.281	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45271	intron	CG42700	FBgn0261611
A512R23	2R	21602229	G	A	GGC	G>A	GCC	C>T	0.176	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR45150	intergenic	intergenic	intergenic
A512R23	3L	3887801	G	A	CGC	G>A	GCG	C>T	0.212	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43917	intergenic	intergenic	intergenic
A512R23	3L	3887804	C	T	ACA	C>T	ACA	C>T	0.243	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43917	intergenic	intergenic	intergenic
A512R23	3L	4897994	T	C	GTC	T>C	GTC	T>C	0.281	somaticsniper,strelka	synonymous_variant	LOW	CG13705	exon	CG13705	FBgn0035582
A512R23	3L	4898009	C	T	CCG	C>T	CCG	C>T	0.219	somaticsniper,strelka	synonymous_variant	LOW	CG13705	exon	CG13705	FBgn0035582
A512R23	3L	7360880	T	C	ATA	T>C	ATA	T>C	0.169	varscan2,somaticsniper	5_prime_UTR_variant	MODIFIER	Sec63	5UTR	Sec63	FBgn0035771
A512R23	3L	16249371	G	T	AGA	G>T	TCT	C>A	0.158	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG13055	intergenic	intergenic	intergenic
A512R23	3L	20086268	G	A	GGC	G>A	GCC	C>T	0.21	varscan2,somaticsniper	intron_variant	MODIFIER	sNPF-R	intron	sNPF-R	FBgn0036934
A512R23	3L	21785107	A	T	CAA	A>T	TTG	T>A	0.163	varscan2,somaticsniper	intergenic_region	MODIFIER	CR45958-eg	intergenic	intergenic	intergenic
A512R23	3R	834683	C	A	TCT	C>A	TCT	C>A	0.109	mutect2,strelka	upstream_gene_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R23	3R	13467370	C	T	ACA	C>T	ACA	C>T	0.265	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CR17025	intergenic	intergenic	intergenic
A512R23	3R	13896081	C	T	ACT	C>T	ACT	C>T	0.06	mutect2,strelka	intergenic_region	MODIFIER	E5-ems	intergenic	intergenic	intergenic
A512R23	3R	15450134	G	T	GGA	G>T	TCC	C>A	0.326	somaticsniper,strelka	intron_variant	MODIFIER	AdamTS-A	intron	AdamTS-A	FBgn0038341
A512R23	3R	22862444	T	C	TTT	T>C	TTT	T>C	0.111	mutect2,strelka	intergenic_region	MODIFIER	CR43846-klg	intergenic	intergenic	intergenic
A512R23	3R	23358775	G	A	GGT	G>A	ACC	C>T	0.132	mutect2,strelka	upstream_gene_variant	MODIFIER	ATPsyn-Cf6	intergenic	intergenic	intergenic
A512R23	3R	29305933	T	C	CTG	T>C	CTG	T>C	0.156	varscan2,somaticsniper,strelka	intergenic_region	MODIFIER	CG14506-Cnx99A	intergenic	intergenic	intergenic
A512R23	3R	30264347	T	C	GTA	T>C	GTA	T>C	0.162	somaticsniper,strelka	intergenic_region	MODIFIER	CG18404-CR46113	intergenic	intergenic	intergenic
A512R23	3R	31152358	C	A	TCT	C>A	TCT	C>A	0.225	somaticsniper,strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
A512R23	X	2585288	C	A	TCC	C>A	TCC	C>A	0.243	mutect2,varscan2,somaticsniper,strelka,freebayes	5_prime_UTR_variant	MODIFIER	CG13760	5UTR	CG13760	FBgn0040375
A512R23	X	13657311	C	T	CCA	C>T	CCA	C>T	0.19	somaticsniper,strelka	intron_variant	MODIFIER	NFAT	intron	NFAT	FBgn0030505
A512R23	Y	403096	C	T	ACA	C>T	ACA	C>T	0.333	somaticsniper,strelka	intron_variant	MODIFIER	kl-3	intron	kl-3	FBgn0267432
A573R25	2L	390718	T	C	ATA	T>C	ATA	T>C	0.0727	mutect2,strelka	downstream_gene_variant	MODIFIER	al	intergenic	intergenic	intergenic
A573R25	2L	3419313	C	G	GCT	C>G	GCT	C>G	0.158	mutect2,strelka	downstream_gene_variant	MODIFIER	CG31952	intron	pgant2	FBgn0031530
A573R25	2L	5814735	A	G	AAG	A>G	CTT	T>C	0.3	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44575	intergenic	intergenic	intergenic
A573R25	2L	8622803	C	G	GCT	C>G	GCT	C>G	0.149	somaticsniper,strelka	downstream_gene_variant	MODIFIER	tRNA:CR31602	intron	Sema-1a	FBgn0011259
A573R25	2L	10918683	A	T	AAT	A>T	ATT	T>A	0.159	somaticsniper,strelka	intron_variant	MODIFIER	dpr2	intron	dpr2	FBgn0261871
A573R25	2L	16410528	T	A	CTT	T>A	CTT	T>A	0.182	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5888	intron	CG5888	FBgn0028523
A573R25	2L	17607549	T	C	ATA	T>C	ATA	T>C	0.188	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44412	intergenic	intergenic	intergenic
A573R25	2L	18347767	G	A	TGA	G>A	TCA	C>T	0.316	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Fas3	intron	Fas3	FBgn0000636
A573R25	2L	19129313	G	T	AGC	G>T	GCT	C>A	0.194	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	l(2)37Cd	3UTR	l(2)37Cd	FBgn0086445
A573R25	2L	22107432	C	G	ACC	C>G	ACC	C>G	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31703	intergenic	intergenic	intergenic
A573R25	2R	8627688	A	T	AAT	A>T	ATT	T>A	0.243	somaticsniper,strelka	upstream_gene_variant	MODIFIER	beta3GalTII	intergenic	intergenic	intergenic
A573R25	2R	8813412	A	T	CAT	A>T	ATG	T>A	0.276	somaticsniper,strelka	intron_variant	MODIFIER	sns	intron	sns	FBgn0024189
A573R25	2R	9782736	A	T	AAG	A>T	CTT	T>A	0.192	somaticsniper,strelka	intron_variant	MODIFIER	CG1688	intron	CG1688	FBgn0027589
A573R25	2R	12801105	C	T	CCC	C>T	CCC	C>T	0.233	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	sca	3UTR	sca	FBgn0003326
A573R25	2R	13576507	A	G	CAC	A>G	GTG	T>C	0.424	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG42807	ncRNA	CR44365	FBgn0265496
A573R25	2R	20761136	C	A	ACT	C>A	ACT	C>A	0.31	somaticsniper,strelka	intergenic_region	MODIFIER	CG34202-CR44665	intergenic	intergenic	intergenic
A573R25	2R	20838317	C	G	ACT	C>G	ACT	C>G	0.179	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	insc	exon_2	CR44667	FBgn0265878
A573R25	3L	3638608	T	A	GTA	T>A	GTA	T>A	0.2	somaticsniper,strelka	intron_variant	MODIFIER	dar1	intron	dar1	FBgn0263239
A573R25	3L	4299335	T	A	TTT	T>A	TTT	T>A	0.179	somaticsniper,strelka	intron_variant	MODIFIER	dyl	intron	dyl	FBgn0066365
A573R25	3L	5280621	T	A	ATA	T>A	ATA	T>A	0.318	somaticsniper,strelka	upstream_gene_variant	MODIFIER	shep	intergenic	intergenic	intergenic
A573R25	3L	6155113	T	C	CTG	T>C	CTG	T>C	0.208	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Cpr65Ax2	exon_1	CR45421	FBgn0266970
A573R25	3L	6310103	G	T	TGG	G>T	CCA	C>A	0.136	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45114	intergenic	intergenic	intergenic
A573R25	3L	8733232	G	A	TGT	G>A	ACA	C>T	0.194	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Prm	3UTR	Prm	FBgn0003149
A573R25	3L	9068484	C	A	TCG	C>A	TCG	C>A	0.294	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG4911	3UTR	CG4911	FBgn0035959
A573R25	3L	9068485	G	T	CGA	G>T	TCG	C>A	0.286	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG4911	3UTR	CG4911	FBgn0035959
A573R25	3L	9068486	A	T	GAA	A>T	TTC	T>A	0.286	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG4911	3UTR	CG4911	FBgn0035959
A573R25	3L	9897096	A	G	AAG	A>G	CTT	T>C	0.3	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45875	intron	CG6707	FBgn0036058
A573R25	3L	10656206	G	A	TGC	G>A	GCA	C>T	0.192	somaticsniper,strelka	intron_variant	MODIFIER	CG32066	intron	CG32066	FBgn0052066
A573R25	3L	10656207	C	T	GCT	C>T	GCT	C>T	0.222	somaticsniper,strelka	intron_variant	MODIFIER	CG32066	intron	CG32066	FBgn0052066
A573R25	3L	12481140	A	C	GAT	A>C	ATC	T>G	0.102	varscan2,strelka	upstream_gene_variant	MODIFIER	CG33725	intron	CG10663	FBgn0036287
A573R25	3L	16269726	T	C	ATA	T>C	ATA	T>C	0.2	somaticsniper,strelka	synonymous_variant	LOW	CG13068	exon	CG13068	FBgn0036588
A573R25	3L	16461727	A	T	GAA	A>T	TTC	T>A	0.235	somaticsniper,strelka	intron_variant	MODIFIER	CG33158	intron	CG33158	FBgn0053158
A573R25	3L	17948928	A	T	GAA	A>T	TTC	T>A	0.231	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45393	intergenic	intergenic	intergenic
A573R25	3L	18142269	C	T	CCA	C>T	CCA	C>T	0.18	varscan2,somaticsniper	intron_variant	MODIFIER	gk	intron	geko	FBgn0020300
A573R25	3L	18411901	C	T	TCT	C>T	TCT	C>T	0.28	varscan2,somaticsniper,strelka	intergenic_region	MODIFIER	rpr-skl	intergenic	intergenic	intergenic
A573R25	3L	19217917	C	A	TCC	C>A	TCC	C>A	0.324	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	fz2	intron	fz2	FBgn0016797
A573R25	3L	19251089	C	A	CCT	C>A	CCT	C>A	0.179	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	rept	intergenic	intergenic	intergenic
A573R25	3L	19891996	C	T	CCG	C>T	CCG	C>T	0.0465	mutect2,strelka	missense_variant	MODERATE	Su(Tpl)	exon	Su(Tpl)	FBgn0014037
A573R25	3L	22822781	C	T	TCT	C>T	TCT	C>T	0.359	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	jim	intron	jim	FBgn0027339
A573R25	3L	25162708	G	A	GGG	G>A	CCC	C>T	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	Ucrh-CR40354	intergenic	intergenic	intergenic
A573R25	3L	25798097	C	G	GCT	C>G	GCT	C>G	0.203	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG40178	intergenic	intergenic	intergenic
A573R25	3R	7525389	C	T	GCC	C>T	GCC	C>T	0.0656	mutect2,strelka	missense_variant	MODERATE	alpha-Est6	exon_2	alpha-Est6	FBgn0015574
A573R25	3R	10570716	T	A	TTG	T>A	TTG	T>A	0.467	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A573R25	3R	11476493	G	T	TGC	G>T	GCA	C>A	0.0897	mutect2,strelka	intergenic_region	MODIFIER	CG17230-CR45581	intergenic	intergenic	intergenic
A573R25	3R	13279634	A	C	AAC	A>C	GTT	T>G	0.192	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG8630	intergenic	intergenic	intergenic
A573R25	3R	13971969	C	T	ACG	C>T	ACG	C>T	0.25	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	rdx	exon_1	CR43460	FBgn0263414
A573R25	3R	18069576	T	C	TTT	T>C	TTT	T>C	0.171	freebayes	intergenic_region	MODIFIER	htl-CG14317	intergenic	intergenic	intergenic
A573R25	3R	21419703	T	A	ATA	T>A	ATA	T>A	0.308	varscan2,somaticsniper	intron_variant	MODIFIER	lbl	intron	lbl	FBgn0008651
A573R25	3R	23912632	T	G	GTT	T>G	GTT	T>G	0.211	somaticsniper,strelka	intron_variant	MODIFIER	sba	intron	sba	FBgn0016754
A573R25	3R	24590471	A	T	CAC	A>T	GTG	T>A	0.0962	mutect2,strelka	intron_variant	MODIFIER	mld	intron	mld	FBgn0263490
A573R25	3R	30088196	G	A	AGG	G>A	CCT	C>T	0.207	varscan2,somaticsniper	intron_variant	MODIFIER	sima	intron	sima	FBgn0266411
A573R25	4	976701	C	A	GCG	C>A	GCG	C>A	0.417	somaticsniper,strelka	upstream_gene_variant	MODIFIER	fuss	ncRNA	sphinx	FBgn0083990
A573R25	4	976720	C	A	ACC	C>A	ACC	C>A	0.357	somaticsniper,strelka	upstream_gene_variant	MODIFIER	fuss	ncRNA	sphinx	FBgn0083990
A573R25	4	976723	T	C	CTT	T>C	CTT	T>C	0.333	somaticsniper,strelka	upstream_gene_variant	MODIFIER	fuss	ncRNA	sphinx	FBgn0083990
A573R25	4	976748	A	C	AAT	A>C	ATT	T>G	0.312	somaticsniper,strelka	upstream_gene_variant	MODIFIER	fuss	ncRNA	sphinx	FBgn0083990
A573R25	X	5485618	T	C	TTC	T>C	TTC	T>C	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	SPR	intron	SPR	FBgn0029768
A573R25	X	6966242	A	G	TAG	A>G	CTA	T>C	0.13	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG14431	intron	CG32732	FBgn0052732
A573R25	X	9745020	T	A	ATT	T>A	ATT	T>A	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	Sp1	intron	Sp1	FBgn0020378
A573R25	X	9745021	T	C	TTC	T>C	TTC	T>C	0.235	varscan2,somaticsniper	intron_variant	MODIFIER	Sp1	intron	Sp1	FBgn0020378
A573R25	X	14839671	C	G	GCC	C>G	GCC	C>G	0.684	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14407	intron	Flo2	FBgn0264078
A573R25	X	14839672	C	T	CCG	C>T	CCG	C>T	0.667	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14407	intron	Flo2	FBgn0264078
A573R25	X	16136302	T	G	TTG	T>G	TTG	T>G	0.25	somaticsniper,strelka	intron_variant	MODIFIER	disco-r	intron	disco-r	FBgn0042650
A573R25	X	20270790	A	T	AAC	A>T	GTT	T>A	0.294	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Inx6	intergenic	intergenic	intergenic
A573R27	2L	764192	G	A	AGC	G>A	GCT	C>T	0.286	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	GABA-B-R3	intergenic	intergenic	intergenic
A573R27	2L	3819082	C	A	TCT	C>A	TCT	C>A	0.24	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44076	intergenic	intergenic	intergenic
A573R27	2L	4043305	T	C	GTT	T>C	GTT	T>C	0.153	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
A573R27	2L	7132795	C	T	GCC	C>T	GCC	C>T	0.152	varscan2,somaticsniper	missense_variant	MODERATE	Pvf3	exon_1	Pvf3	FBgn0085407
A573R27	2L	10693694	G	A	TGA	G>A	TCA	C>T	0.5	somaticsniper,strelka	missense_variant	MODERATE	CG17108	exon	CG17108	FBgn0032285
A573R27	2L	10693695	A	T	GAC	A>T	GTC	T>A	0.5	somaticsniper,strelka	synonymous_variant	LOW	CG17108	exon	CG17108	FBgn0032285
A573R27	2L	15916970	G	C	CGC	G>C	GCG	C>G	0.281	mutect2,varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	CG13244	exon_1	CG13244	FBgn0032577
A573R27	2L	18402727	G	T	CGT	G>T	ACG	C>A	0.276	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44487	intergenic	intergenic	intergenic
A573R27	2L	18402728	T	G	GTT	T>G	GTT	T>G	0.276	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44487	intergenic	intergenic	intergenic
A573R27	2L	22241818	A	T	AAA	A>T	TTT	T>A	0.25	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG3262	3UTR	CG3262	FBgn0032986
A573R27	2L	23174994	C	A	TCT	C>A	TCT	C>A	0.314	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG12567	intergenic	intergenic	intergenic
A573R27	2R	4947068	G	A	TGT	G>A	ACA	C>T	0.353	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Ir41a	intron	Ir41a	FBgn0040849
A573R27	2R	10293202	C	T	GCA	C>T	GCA	C>T	0.174	somaticsniper,strelka	intron_variant	MODIFIER	CAP	intron	CAP	FBgn0033504
A573R27	2R	10293205	T	A	CTT	T>A	CTT	T>A	0.167	somaticsniper,strelka	intron_variant	MODIFIER	CAP	intron	CAP	FBgn0033504
A573R27	2R	16639515	T	A	CTA	T>A	CTA	T>A	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Alk	intron	Alk	FBgn0040505
A573R27	2R	23296327	G	A	TGG	G>A	CCA	C>T	0.296	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR44783	intergenic	intergenic	intergenic
A573R27	3L	1279853	A	T	GAT	A>T	ATC	T>A	0.119	varscan2,strelka	intron_variant	MODIFIER	CG32333	intron	CG32333	FBgn0052333
A573R27	3L	4656913	A	C	GAC	A>C	GTC	T>G	0.219	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45830	intron	axo	FBgn0262870
A573R27	3L	5483177	G	A	AGT	G>A	ACT	C>T	0.278	somaticsniper,strelka	synonymous_variant	LOW	CG4835	exon	CG4835	FBgn0035607
A573R27	3L	9916049	T	C	TTT	T>C	TTT	T>C	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
A573R27	3L	12418072	T	G	GTT	T>G	GTT	T>G	0.176	freebayes	upstream_gene_variant	MODIFIER	CG32103	intergenic	intergenic	intergenic
A573R27	3L	16461727	A	T	GAA	A>T	TTC	T>A	0.222	somaticsniper,strelka	intron_variant	MODIFIER	CG33158	intron	CG33158	FBgn0053158
A573R27	3L	20218934	A	G	AAC	A>G	GTT	T>C	0.0816	mutect2,strelka	missense_variant	MODERATE	CG6933	exon	CG6933	FBgn0036952
A573R27	3L	21141469	T	G	GTG	T>G	GTG	T>G	0.242	somaticsniper,strelka	intron_variant	MODIFIER	Ac78C	intron	Ac78C	FBgn0024150
A573R27	3R	14048319	C	T	ACA	C>T	ACA	C>T	0.375	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tRNA:S2b:88A	intergenic	intergenic	intergenic
A573R27	3R	17463237	G	C	AGA	G>C	TCT	C>G	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	CG14330-Dscam3	intergenic	intergenic	intergenic
A573R27	3R	19603656	A	G	AAC	A>G	GTT	T>C	0.478	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Cpr92A	intron	CG7342	FBgn0038716
A573R27	3R	20830945	A	T	TAC	A>T	GTA	T>A	0.364	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	AdSS	intergenic	intergenic	intergenic
A573R27	3R	21792317	T	G	TTT	T>G	TTT	T>G	0.282	somaticsniper,strelka	intron_variant	MODIFIER	CASK	intron	CASK	FBgn0013759
A573R27	3R	23298545	C	T	CCT	C>T	CCT	C>T	0.176	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	pnt	intron	pnt	FBgn0003118
A573R27	3R	23298546	T	A	CTT	T>A	CTT	T>A	0.171	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	pnt	intron	pnt	FBgn0003118
A573R27	X	9745016	G	T	AGC	G>T	GCT	C>A	0.306	varscan2,somaticsniper	intron_variant	MODIFIER	Sp1	intron	Sp1	FBgn0020378
A573R27	X	9745020	T	A	ATT	T>A	ATT	T>A	0.176	varscan2,somaticsniper	intron_variant	MODIFIER	Sp1	intron	Sp1	FBgn0020378
A573R27	X	9745021	T	C	TTC	T>C	TTC	T>C	0.176	varscan2,somaticsniper	intron_variant	MODIFIER	Sp1	intron	Sp1	FBgn0020378
A573R29	2L	2044501	C	T	GCC	C>T	GCC	C>T	0.0811	mutect2,strelka	upstream_gene_variant	MODIFIER	Kebab	intergenic	intergenic	intergenic
A573R29	2L	2716743	A	T	CAT	A>T	ATG	T>A	0.333	somaticsniper,strelka	intron_variant	MODIFIER	CG31690	intron	CG31690	FBgn0051690
A573R29	2L	2722009	T	C	TTT	T>C	TTT	T>C	0.0833	mutect2,strelka	upstream_gene_variant	MODIFIER	CG31689	intergenic	intergenic	intergenic
A573R29	2L	4739401	G	T	TGG	G>T	CCA	C>A	0.0595	mutect2,strelka	upstream_gene_variant	MODIFIER	CG15631	intron	CG15630	FBgn0031627
A573R29	2L	4807012	A	C	AAA	A>C	TTT	T>G	0.156	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45297	intergenic	intergenic	intergenic
A573R29	2L	6513516	T	G	TTT	T>G	TTT	T>G	0.0857	mutect2,strelka	intron_variant	MODIFIER	CG31637	intron	CG31637	FBgn0051637
A573R29	2L	8351635	G	A	CGT	G>A	ACG	C>T	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Mur29B	intergenic	intergenic	intergenic
A573R29	2L	13293349	T	C	TTG	T>C	TTG	T>C	0.192	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG16824	3UTR	CG16824	FBgn0040973
A573R29	2L	13293350	G	A	TGA	G>A	TCA	C>T	0.218	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG16824	3UTR	CG16824	FBgn0040973
A573R29	2L	15054949	T	A	ATG	T>A	ATG	T>A	0.152	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33679	intron	ck	FBgn0000317
A573R29	2L	15639579	G	C	TGG	G>C	CCA	C>G	0.0923	mutect2,strelka	downstream_gene_variant	MODIFIER	CG18480	intergenic	intergenic	intergenic
A573R29	2L	16232756	G	A	GGT	G>A	ACC	C>T	0.278	somaticsniper,strelka	intron_variant	MODIFIER	CG42817	intron	CG42817	FBgn0261999
A573R29	2L	18207231	G	A	GGA	G>A	TCC	C>T	0.0851	mutect2,strelka	downstream_gene_variant	MODIFIER	CG31802	intron	CG42750	FBgn0261804
A573R29	2L	18675657	T	A	CTT	T>A	CTT	T>A	0.203	somaticsniper,strelka	missense_variant	MODERATE	Mst36Fa	exon_3	Mst36Fa	FBgn0086681
A573R29	2L	19024083	T	C	CTC	T>C	CTC	T>C	0.178	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44184	exon_1	CR43700	FBgn0263838
A573R29	2L	22200551	C	T	TCT	C>T	TCT	C>T	0.349	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ir40a	intron	Ir40a	FBgn0259683
A573R29	2R	5724886	A	G	GAT	A>G	ATC	T>C	0.389	somaticsniper,strelka	intron_variant	MODIFIER	ap	intron	ap	FBgn0267978
A573R29	2R	7759715	T	A	CTT	T>A	CTT	T>A	0.235	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG30497	intron	CG45093	FBgn0266526
A573R29	2R	11574514	A	G	AAT	A>G	ATT	T>C	0.0635	mutect2,strelka	downstream_gene_variant	MODIFIER	tou	intergenic	intergenic	intergenic
A573R29	2R	12895751	A	G	CAT	A>G	ATG	T>C	0.267	varscan2,somaticsniper	intron_variant	MODIFIER	vg	intron	vg	FBgn0003975
A573R29	2R	14419806	C	T	GCT	C>T	GCT	C>T	0.237	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG17386	intergenic	intergenic	intergenic
A573R29	2R	15234663	A	T	CAG	A>T	CTG	T>A	0.235	varscan2,somaticsniper	missense_variant	MODERATE	Fs	exon_5	Fs	FBgn0259878
A573R29	2R	16411661	A	C	AAA	A>C	TTT	T>G	0.277	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Menl-2	intron	Sema-2b	FBgn0264273
A573R29	2R	19063017	G	A	TGC	G>A	GCA	C>T	0.147	somaticsniper,strelka	upstream_gene_variant	MODIFIER	5-HT1A	intergenic	intergenic	intergenic
A573R29	2R	21367323	G	A	TGT	G>A	ACA	C>T	0.196	somaticsniper,strelka	intron_variant	MODIFIER	cv-2	intron	cv-2	FBgn0000395
A573R29	2R	22293214	G	C	CGA	G>C	TCG	C>G	0.1	mutect2,strelka	upstream_gene_variant	MODIFIER	CG5819	intergenic	intergenic	intergenic
A573R29	3L	531767	A	C	AAA	A>C	TTT	T>G	0.182	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45118	intron	klar	FBgn0001316
A573R29	3L	661619	A	G	TAG	A>G	CTA	T>C	0.244	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Rev1	intergenic	intergenic	intergenic
A573R29	3L	1420731	T	A	ATT	T>A	ATT	T>A	0.214	somaticsniper,strelka	downstream_gene_variant	MODIFIER	FucTD	intron	Ptp61F	FBgn0267487
A573R29	3L	3926765	C	T	ACA	C>T	ACA	C>T	0.257	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Eip63F-1	intron	Eip63F-1	FBgn0004910
A573R29	3L	6829938	G	T	CGC	G>T	GCG	C>A	0.2	varscan2,somaticsniper	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
A573R29	3L	8669745	T	G	TTT	T>G	TTT	T>G	0.163	somaticsniper,strelka	intergenic_region	MODIFIER	Pex7-h	intergenic	intergenic	intergenic
A573R29	3L	9216988	A	C	CAC	A>C	GTG	T>G	0.167	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG4476	intergenic	intergenic	intergenic
A573R29	3L	9216998	A	C	CAA	A>C	TTG	T>G	0.179	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG4476	intergenic	intergenic	intergenic
A573R29	3L	9216999	A	T	AAG	A>T	CTT	T>A	0.179	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG4476	intergenic	intergenic	intergenic
A573R29	3L	12310996	T	C	GTT	T>C	GTT	T>C	0.233	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	CG44355	intron	CG44355	FBgn0265455
A573R29	3L	15658207	A	G	TAT	A>G	ATA	T>C	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Eig71Ee	intergenic	intergenic	intergenic
A573R29	3L	20454270	T	C	CTC	T>C	CTC	T>C	0.265	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5199	snoRNA	snoRNA:Me18S-U1356b	FBgn0082948
A573R29	3L	20454274	A	C	AAT	A>C	ATT	T>G	0.277	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5199	snoRNA	snoRNA:Me18S-U1356b	FBgn0082948
A573R29	3R	11628045	C	A	CCA	C>A	CCA	C>A	0.371	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	CG18764	exon_2	CG18764	FBgn0042205
A573R29	3R	11834732	G	C	AGA	G>C	TCT	C>G	0.0758	mutect2,strelka	intron_variant	MODIFIER	CG6959	intron	CG6959	FBgn0037956
A573R29	3R	12167774	A	C	AAA	A>C	TTT	T>G	0.0893	mutect2,strelka	upstream_gene_variant	MODIFIER	Cpn	intergenic	intergenic	intergenic
A573R29	3R	16200637	A	C	CAA	A>C	TTG	T>G	0.226	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31287	intron	CG6126	FBgn0038407
A573R29	3R	18232694	A	T	TAC	A>T	GTA	T>A	0.244	somaticsniper,strelka	upstream_gene_variant	MODIFIER	repo	intergenic	intergenic	intergenic
A573R29	3R	18359277	G	A	CGT	G>A	ACG	C>T	0.389	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45634	intron	CG15803	FBgn0038606
A573R29	3R	18958947	A	C	TAA	A>C	TTA	T>G	0.233	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG42613	3UTR	CG43732	FBgn0263983
A573R29	3R	23198088	G	A	TGG	G>A	CCA	C>T	0.286	somaticsniper,strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
A573R29	3R	23198089	G	A	GGA	G>A	TCC	C>T	0.306	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
A573R29	3R	26294444	G	T	AGT	G>T	ACT	C>A	0.216	somaticsniper,strelka	intergenic_region	MODIFIER	CG6154-CG33970	intergenic	intergenic	intergenic
A573R29	3R	28953291	A	C	GAA	A>C	TTC	T>G	0.17	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CG14521	intron	DIP-gamma	FBgn0039617
A573R29	3R	29551790	A	G	AAC	A>G	GTT	T>C	0.16	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Dr	intergenic	intergenic	intergenic
A573R29	X	1651699	T	C	CTG	T>C	CTG	T>C	0.22	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG11509	3UTR	br	FBgn0283451
A573R29	X	8343435	G	A	TGT	G>A	ACA	C>T	0.172	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
A573R31	2L	2311179	G	C	AGA	G>C	TCT	C>G	0.238	somaticsniper,strelka	upstream_gene_variant	MODIFIER	eys	intron	CG9967	FBgn0031413
A573R31	2L	5561905	T	C	CTT	T>C	CTT	T>C	0.318	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	snRNA:U4:25F	intron	GluRIIB	FBgn0020429
A573R31	2L	7884638	T	C	TTC	T>C	TTC	T>C	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG34132	intron	CG7102	FBgn0031961
A573R31	2L	8086846	G	T	AGA	G>T	TCT	C>A	0.214	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Mcr	intron	Bsg	FBgn0261822
A573R31	2L	12294329	C	T	GCT	C>T	GCT	C>T	0.167	varscan2,somaticsniper	intron_variant	MODIFIER	aret	intron	bru1	FBgn0000114
A573R31	2L	14096356	C	T	CCG	C>T	CCG	C>T	0.212	somaticsniper,strelka	downstream_gene_variant	MODIFIER	nAChRalpha5	intergenic	intergenic	intergenic
A573R31	2L	21736541	T	A	CTA	T>A	CTA	T>A	0.383	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	step	intergenic	intergenic	intergenic
A573R31	2L	23038946	A	T	TAC	A>T	GTA	T>A	0.204	somaticsniper,strelka	intergenic_region	MODIFIER	Cht3-Spf45	intergenic	intergenic	intergenic
A573R31	2L	23393489	T	C	GTA	T>C	GTA	T>C	0.393	somaticsniper,strelka	intergenic_region	MODIFIER	CR42530-CR41519	intergenic	intergenic	intergenic
A573R31	2R	9470907	A	T	AAT	A>T	ATT	T>A	0.235	somaticsniper,strelka	intron_variant	MODIFIER	Camta	intron	Camta	FBgn0259234
A573R31	2R	9470908	T	C	ATC	T>C	ATC	T>C	0.219	somaticsniper,strelka	intron_variant	MODIFIER	Camta	intron	Camta	FBgn0259234
A573R31	2R	9470909	C	T	TCT	C>T	TCT	C>T	0.219	somaticsniper,strelka	intron_variant	MODIFIER	Camta	intron	Camta	FBgn0259234
A573R31	2R	12370708	A	G	TAT	A>G	ATA	T>C	0.172	varscan2,somaticsniper	missense_variant	MODERATE	CG33012	exon	CG33012	FBgn0053012
A573R31	2R	12698452	A	G	AAC	A>G	GTT	T>C	0.171	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	wuc	intergenic	intergenic	intergenic
A573R31	2R	14285366	T	C	CTT	T>C	CTT	T>C	0.211	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ih	intron	Ih	FBgn0263397
A573R31	2R	18253622	A	C	GAT	A>C	ATC	T>G	0.226	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR44421	intergenic	intergenic	intergenic
A573R31	2R	18395409	A	T	AAT	A>T	ATT	T>A	0.24	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15068	intergenic	intergenic	intergenic
A573R31	2R	18499120	T	A	TTG	T>A	TTG	T>A	0.44	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG30116	intergenic	intergenic	intergenic
A573R31	2R	18499121	G	T	TGC	G>T	GCA	C>A	0.462	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG30116	intergenic	intergenic	intergenic
A573R31	2R	20499380	G	A	GGT	G>A	ACC	C>T	0.298	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Obp57c	intergenic	intergenic	intergenic
A573R31	2R	21106384	T	C	GTT	T>C	GTT	T>C	0.136	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG34396	intron	ktub	FBgn0015721
A573R31	2R	24617174	T	C	CTT	T>C	CTT	T>C	0.205	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG4741	intron	CG13594	FBgn0035041
A573R31	3L	1975375	C	T	CCC	C>T	CCC	C>T	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG11815	intergenic	intergenic	intergenic
A573R31	3L	1975376	C	A	CCA	C>A	CCA	C>A	0.292	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG11815	intergenic	intergenic	intergenic
A573R31	3L	8399674	A	G	GAC	A>G	GTC	T>C	0.0769	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG7120	5UTR	CG7120	FBgn0035888
A573R31	3L	9673167	C	T	ACG	C>T	ACG	C>T	0.2	varscan2,somaticsniper	intron_variant	MODIFIER	fry	intron	fry	FBgn0016081
A573R31	3L	9676530	C	T	ACC	C>T	ACC	C>T	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG16717	intron	fry	FBgn0016081
A573R31	3L	10363461	A	G	CAA	A>G	TTG	T>C	0.286	somaticsniper,strelka	upstream_gene_variant	MODIFIER	mir-276a	exon_3	CR46006	FBgn0267668
A573R31	3L	11299080	C	A	GCT	C>A	GCT	C>A	0.208	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6175	intergenic	intergenic	intergenic
A573R31	3L	11299086	C	T	GCT	C>T	GCT	C>T	0.174	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6175	intergenic	intergenic	intergenic
A573R31	3L	11381624	G	C	TGA	G>C	TCA	C>G	0.194	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR42755	intergenic	intergenic	intergenic
A573R31	3L	11402104	A	C	AAG	A>C	CTT	T>G	0.417	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44363	intergenic	intergenic	intergenic
A573R31	3L	12862941	G	A	AGG	G>A	CCT	C>T	0.163	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG32107	intergenic	intergenic	intergenic
A573R31	3L	17012704	T	C	CTT	T>C	CTT	T>C	0.449	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG3764	intergenic	intergenic	intergenic
A573R31	3L	19461699	C	T	CCG	C>T	CCG	C>T	0.352	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CG14095	intergenic	intergenic	intergenic
A573R31	3R	12181320	T	C	ATT	T>C	ATT	T>C	0.213	mutect2,varscan2,somaticsniper,strelka,freebayes	intergenic_region	MODIFIER	Cpn-CG4810	intergenic	intergenic	intergenic
A573R31	3R	13506365	A	G	GAA	A>G	TTC	T>C	0.231	varscan2,somaticsniper	intergenic_region	MODIFIER	CR45589-CG12538	intergenic	intergenic	intergenic
A573R31	3R	14357932	A	G	AAA	A>G	TTT	T>C	0.175	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG31320	intron	NK7.1	FBgn0024321
A573R31	3R	15454839	G	A	GGT	G>A	ACC	C>T	0.189	varscan2,somaticsniper	intron_variant	MODIFIER	AdamTS-A	intron	AdamTS-A	FBgn0038341
A573R31	3R	18078232	C	A	CCC	C>A	CCC	C>A	0.206	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14317	intergenic	intergenic	intergenic
A573R31	3R	18097118	T	A	ATG	T>A	ATG	T>A	0.207	somaticsniper,strelka	intron_variant	MODIFIER	sr	intron	sr	FBgn0003499
A573R31	3R	18097119	G	A	TGA	G>A	TCA	C>T	0.222	somaticsniper,strelka	intron_variant	MODIFIER	sr	intron	sr	FBgn0003499
A573R31	3R	21419465	G	A	GGA	G>A	TCC	C>T	0.189	varscan2,somaticsniper	intron_variant	MODIFIER	lbl	intron	lbl	FBgn0008651
A573R31	3R	23341032	C	G	TCA	C>G	TCA	C>G	0.241	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	pnt	intron	pnt	FBgn0003118
A573R31	3R	23739359	T	C	GTG	T>C	GTG	T>C	0.176	somaticsniper,strelka	intron_variant	MODIFIER	Hmgcr	intron	Hmgcr	FBgn0263782
A573R31	3R	24746703	G	T	AGT	G>T	ACT	C>A	0.186	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tld	intron	tok	FBgn0004885
A573R31	3R	25610826	T	G	ATG	T>G	ATG	T>G	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ymp	intergenic	intergenic	intergenic
A573R31	3R	25610827	G	T	TGG	G>T	CCA	C>A	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ymp	intergenic	intergenic	intergenic
A573R31	3R	26476480	A	G	AAT	A>G	ATT	T>C	0.145	varscan2,somaticsniper	intron_variant	MODIFIER	plum	intron	plum	FBgn0039431
A573R31	X	657163	C	G	TCC	C>G	TCC	C>G	0.0926	mutect2,strelka	missense_variant	MODERATE	SkpA	exon	SkpA	FBgn0025637
A573R31	X	5402618	C	A	CCG	C>A	CCG	C>A	0.192	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	SK	3UTR	SK	FBgn0029761
A573R31	X	5402621	T	A	ATC	T>A	ATC	T>A	0.231	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	SK	3UTR	SK	FBgn0029761
A573R31	X	11696479	C	T	GCC	C>T	GCC	C>T	0.8	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	PhKgamma	exon_3	PhKgamma	FBgn0011754
A573R31	X	13985158	C	A	GCC	C>A	GCC	C>A	0.35	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
A573R31	X	18901539	A	G	CAC	A>G	GTG	T>C	0.316	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG7349	intron	CG7378	FBgn0030976
A573R33	2L	2826630	A	C	CAG	A>C	CTG	T>G	0.269	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3123	intron	Duox	FBgn0283531
A573R33	2L	3055967	G	T	CGC	G>T	GCG	C>A	0.0571	mutect2,strelka	3_prime_UTR_variant	MODIFIER	v(2)k05816	3UTR	FASN2	FBgn0042627
A573R33	2L	4300840	C	T	ACC	C>T	ACC	C>T	0.178	somaticsniper,strelka	intron_variant	MODIFIER	tutl	intron	tutl	FBgn0010473
A573R33	2L	5663875	G	T	GGT	G>T	ACC	C>A	0.439	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CR44821	intron	Hsp60C	FBgn0031728
A573R33	2L	6697142	C	A	ACA	C>A	ACA	C>A	0.234	somaticsniper,strelka	intron_variant	MODIFIER	Tsp	intron	Tsp	FBgn0031850
A573R33	2L	9195223	C	A	GCC	C>A	GCC	C>A	0.113	mutect2,strelka	intron_variant	MODIFIER	tai	intron	tai	FBgn0041092
A573R33	2L	14129893	A	T	CAG	A>T	CTG	T>A	0.222	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG17341	intron	CG46301	FBgn0283651
A573R33	2L	16232756	G	A	GGT	G>A	ACC	C>T	0.286	varscan2,somaticsniper	intron_variant	MODIFIER	CG42817	intron	CG42817	FBgn0261999
A573R33	2L	16359667	C	G	CCG	C>G	CCG	C>G	0.17	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CaBP1	intergenic	intergenic	intergenic
A573R33	2L	16504648	G	T	GGA	G>T	TCC	C>A	0.136	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG5953	intron	Tpr2	FBgn0032586
A573R33	2L	16612386	A	T	AAT	A>T	ATT	T>A	0.24	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG4631	intron	CG42389	FBgn0259735
A573R33	2L	19104111	C	A	TCC	C>A	TCC	C>A	0.214	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44905	intron	Lim3	FBgn0002023
A573R33	2R	947188	G	A	AGC	G>A	GCT	C>T	0.255	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG40498	intron	CG40498	FBgn0069969
A573R33	2R	4164699	A	T	CAC	A>T	GTG	T>A	0.209	somaticsniper,strelka	intergenic_region	MODIFIER	CG17683-CG40127	intergenic	intergenic	intergenic
A573R33	2R	10402406	C	T	CCC	C>T	CCC	C>T	0.174	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG12898	intron	CG42732	FBgn0261698
A573R33	2R	10913701	A	G	GAA	A>G	TTC	T>C	0.167	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
A573R33	2R	10913702	A	G	AAG	A>G	CTT	T>C	0.183	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
A573R33	2R	10913755	T	C	ATG	T>C	ATG	T>C	0.161	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
A573R33	2R	15062922	C	A	CCA	C>A	CCA	C>A	0.153	varscan2,somaticsniper	intergenic_region	MODIFIER	CG33467-CR44457	intergenic	intergenic	intergenic
A573R33	2R	16690517	C	A	TCC	C>A	TCC	C>A	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG5210	intron	CG30463	FBgn0050463
A573R33	2R	19491191	G	A	AGC	G>A	GCT	C>T	0.291	mutect2,varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	Oseg6	exon_2	Oseg6	FBgn0034452
A573R33	2R	21391815	T	C	TTG	T>C	TTG	T>C	0.22	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Acox57D-p	intron	Acox57D-d	FBgn0034629
A573R33	2R	22520931	T	C	ATG	T>C	ATG	T>C	0.316	somaticsniper,strelka	intron_variant	MODIFIER	px	intron	px	FBgn0003175
A573R33	2R	23421448	G	A	TGT	G>A	ACA	C>T	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9812	intergenic	intergenic	intergenic
A573R33	3L	2860945	T	C	ATA	T>C	ATA	T>C	0.275	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A573R33	3L	5645192	A	C	CAA	A>C	TTG	T>G	0.159	varscan2,strelka	intron_variant	MODIFIER	Blimp-1	intron	Blimp-1	FBgn0035625
A573R33	3L	9559143	T	G	TTT	T>G	TTT	T>G	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CG42673	intron	CG42673	FBgn0261555
A573R33	3L	9926380	C	T	TCT	C>T	TCT	C>T	0.184	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
A573R33	3L	9948194	T	A	TTA	T>A	TTA	T>A	0.273	somaticsniper,strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
A573R33	3R	1441807	G	A	CGT	G>A	ACG	C>T	0.217	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A573R33	3R	8224918	C	G	TCC	C>G	TCC	C>G	0.19	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR45550	intergenic	intergenic	intergenic
A573R33	3R	14081691	G	A	AGC	G>A	GCT	C>T	0.16	varscan2,somaticsniper	synonymous_variant	LOW	foxo	exon	foxo	FBgn0038197
A573R33	3R	18429844	C	T	TCT	C>T	TCT	C>T	0.179	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	fru	3UTR	fru	FBgn0004652
A573R33	3R	18429846	A	G	TAT	A>G	ATA	T>C	0.194	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	fru	3UTR	fru	FBgn0004652
A573R33	3R	23198088	G	A	TGG	G>A	CCA	C>T	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
A573R33	3R	25090993	C	G	ACT	C>G	ACT	C>G	0.207	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	fd96Cb	intergenic	intergenic	intergenic
A573R33	3R	26679300	A	C	GAA	A>C	TTC	T>G	0.19	somaticsniper,strelka	intron_variant	MODIFIER	beat-VII	intron	beat-VII	FBgn0250908
A573R33	3R	30360867	A	G	AAC	A>G	GTT	T>C	0.321	varscan2,somaticsniper	synonymous_variant	LOW	hdc	exon	hdc	FBgn0010113
A573R33	X	10425776	A	G	TAT	A>G	ATA	T>C	0.125	mutect2,strelka	intron_variant	MODIFIER	CG32683	intron	CG32683	FBgn0052683
A573R33	X	14798280	G	T	TGT	G>T	ACA	C>A	0.45	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	rut	intron	rut	FBgn0003301
A573R33	X	16136302	T	G	TTG	T>G	TTG	T>G	0.321	somaticsniper,strelka	intron_variant	MODIFIER	disco-r	intron	disco-r	FBgn0042650
A573R33	X	18623711	G	A	CGT	G>A	ACG	C>T	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR44705	intergenic	intergenic	intergenic
A573R33	X	20012649	T	C	CTG	T>C	CTG	T>C	0.222	varscan2,somaticsniper	intron_variant	MODIFIER	Dop2R	intron	Dop2R	FBgn0053517
A573R33	X	22833505	C	T	GCT	C>T	GCT	C>T	0.391	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	mir-2491	pre_miRNA	mir-2491	FBgn0262237
B241R35	2L	1218066	A	C	TAA	A>C	TTA	T>G	0.182	varscan2,strelka	upstream_gene_variant	MODIFIER	CR45346	intergenic	intergenic	intergenic
B241R35	2L	2731584	T	A	ATT	T>A	ATT	T>A	0.214	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31689	intron	CG31689	FBgn0031449
B241R35	2L	12419671	C	G	TCT	C>G	TCT	C>G	0.0952	mutect2,strelka	intron_variant	MODIFIER	vir-1	intron	vir-1	FBgn0043841
B241R35	2L	16339748	T	C	CTC	T>C	CTC	T>C	0.333	varscan2,somaticsniper,strelka	synonymous_variant	LOW	CG42266	exon_2	CG42266	FBgn0259151
B241R35	2L	19383394	G	A	AGA	G>A	TCT	C>T	0.556	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	fon	3UTR	fon	FBgn0032773
B241R35	2L	19383400	A	T	TAT	A>T	ATA	T>A	0.455	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	fon	3UTR	fon	FBgn0032773
B241R35	2L	21125597	C	T	CCT	C>T	CCT	C>T	0.146	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	Nhe2	intron	Nhe2	FBgn0040297
B241R35	2R	5227004	C	T	ACC	C>T	ACC	C>T	0.381	somaticsniper,strelka	intron_variant	MODIFIER	Nipped-A	intron	Nipped-A	FBgn0053554
B241R35	2R	5227005	C	T	CCA	C>T	CCA	C>T	0.391	somaticsniper,strelka	intron_variant	MODIFIER	Nipped-A	intron	Nipped-A	FBgn0053554
B241R35	2R	10549647	T	G	TTT	T>G	TTT	T>G	0.333	varscan2,somaticsniper	intergenic_region	MODIFIER	lola-psq	intergenic	intergenic	intergenic
B241R35	2R	13403838	T	A	ATT	T>A	ATT	T>A	0.389	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG4744	intergenic	intergenic	intergenic
B241R35	2R	16788421	A	G	CAC	A>G	GTG	T>C	0.179	varscan2,somaticsniper	synonymous_variant	LOW	CG5522	exon_3	CG5522	FBgn0034158
B241R35	2R	16991671	T	C	TTT	T>C	TTT	T>C	0.2	mutect2,varscan2	downstream_gene_variant	MODIFIER	CG30461	intron	Cbp53E	FBgn0004580
B241R35	2R	20436029	A	G	AAT	A>G	ATT	T>C	0.3	mutect2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG12484	intron	CG12484	FBgn0086604
B241R35	2R	20436035	A	G	CAA	A>G	TTG	T>C	0.35	mutect2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG12484	intron	CG12484	FBgn0086604
B241R35	2R	23322375	T	C	ATC	T>C	ATC	T>C	0.333	varscan2,somaticsniper	missense_variant	MODERATE	CG30416	exon_1	CG30416	FBgn0050416
B241R35	2R	23322377	G	A	CGC	G>A	GCG	C>T	0.286	varscan2,somaticsniper,strelka	synonymous_variant	LOW	CG30416	exon_1	CG30416	FBgn0050416
B241R35	3L	7848882	G	T	AGC	G>T	GCT	C>A	0.231	somaticsniper,strelka	intron_variant	MODIFIER	Pdp1	intron	Pdp1	FBgn0016694
B241R35	3L	7848883	C	T	GCG	C>T	GCG	C>T	0.231	somaticsniper,strelka	intron_variant	MODIFIER	Pdp1	intron	Pdp1	FBgn0016694
B241R35	3L	9106250	A	T	GAG	A>T	CTC	T>A	0.312	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	bol	intron	bol	FBgn0011206
B241R35	3L	13359669	A	C	TAC	A>C	GTA	T>G	0.333	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG17687	intergenic	intergenic	intergenic
B241R35	3L	15554428	C	A	CCA	C>A	CCA	C>A	0.333	somaticsniper,strelka	missense_variant	MODERATE	AGO2	exon_2	AGO2	FBgn0087035
B241R35	3L	17106740	C	T	CCA	C>T	CCA	C>T	0.111	mutect2,strelka	intron_variant	MODIFIER	Rbp6	intron	Rbp6	FBgn0260943
B241R35	3L	18268371	G	T	AGC	G>T	GCT	C>A	0.182	varscan2,somaticsniper	intergenic_region	MODIFIER	CheA75a-CG5103	intergenic	intergenic	intergenic
B241R35	3L	18268374	C	T	TCC	C>T	TCC	C>T	0.19	varscan2,somaticsniper	intergenic_region	MODIFIER	CheA75a-CG5103	intergenic	intergenic	intergenic
B241R35	3L	18981989	C	A	TCA	C>A	TCA	C>A	0.333	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14075	intergenic	intergenic	intergenic
B241R35	3L	25840357	C	A	CCA	C>A	CCA	C>A	0.211	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45182	intron	CG40178	FBgn0058178
B241R35	3L	27256846	C	G	CCG	C>G	CCG	C>G	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	CR43170-RpL15	intergenic	intergenic	intergenic
B241R35	3R	7261667	C	G	ACC	C>G	ACC	C>G	0.333	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44338	intron	Gld	FBgn0001112
B241R35	3R	7373180	T	G	TTA	T>G	TTA	T>G	0.529	somaticsniper,strelka	upstream_gene_variant	MODIFIER	MstProx	intergenic	intergenic	intergenic
B241R35	3R	14045104	A	T	AAC	A>T	GTT	T>A	0.625	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tRNA:S2b:88A	intergenic	intergenic	intergenic
B241R35	3R	14045105	C	T	ACT	C>T	ACT	C>T	0.625	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tRNA:S2b:88A	intergenic	intergenic	intergenic
B241R35	3R	14252600	G	A	TGC	G>A	GCA	C>T	0.2	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG43179	intron	MetRS-m	FBgn0027083
B241R35	3R	21728451	C	T	GCG	C>T	GCG	C>T	0.174	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43096	intergenic	intergenic	intergenic
B241R35	4	561881	A	G	GAT	A>G	ATC	T>C	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Thd1	intron	Pur-alpha	FBgn0022361
B241R37	2L	561616	T	C	GTT	T>C	GTT	T>C	0.276	varscan2,strelka	synonymous_variant	LOW	CG11835	exon	CG11835	FBgn0031264
B241R37	2L	2051592	C	T	TCG	C>T	TCG	C>T	0.208	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Or22c	intergenic	intergenic	intergenic
B241R37	2L	2317689	A	C	AAC	A>C	GTT	T>G	0.151	somaticsniper,strelka	intron_variant	MODIFIER	CG9967	intron	eys	FBgn0031414
B241R37	2L	5230435	G	T	GGG	G>T	CCC	C>A	0.227	somaticsniper,strelka	intron_variant	MODIFIER	tkv	intron	tkv	FBgn0003716
B241R37	2L	5350717	A	C	GAC	A>C	GTC	T>G	0.2	somaticsniper,strelka	intron_variant	MODIFIER	nompC	intron	nompC	FBgn0016920
B241R37	2L	5350721	T	A	ATC	T>A	ATC	T>A	0.19	somaticsniper,strelka	intron_variant	MODIFIER	nompC	intron	nompC	FBgn0016920
B241R37	2L	6213718	A	C	TAT	A>C	ATA	T>G	0.209	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG34380	intergenic	intergenic	intergenic
B241R37	2L	12859120	T	C	TTA	T>C	TTA	T>C	0.161	somaticsniper,strelka	intergenic_region	MODIFIER	CR44971-ACXC	intergenic	intergenic	intergenic
B241R37	2R	7136318	T	C	CTC	T>C	CTC	T>C	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Cyp9b2	intergenic	intergenic	intergenic
B241R37	2R	8796766	T	A	TTC	T>A	TTC	T>A	0.206	somaticsniper,strelka	upstream_gene_variant	MODIFIER	sns	intergenic	intergenic	intergenic
B241R37	2R	10098872	C	T	TCC	C>T	TCC	C>T	0.0704	mutect2,strelka	missense_variant	MODERATE	RpLP0-like	exon	RpLP0-like	FBgn0033485
B241R37	2R	10685982	A	T	GAA	A>T	TTC	T>A	0.231	somaticsniper,strelka	intron_variant	MODIFIER	stan	intron	stan	FBgn0024836
B241R37	2R	10913701	A	G	GAA	A>G	TTC	T>C	0.194	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
B241R37	2R	10913702	A	G	AAG	A>G	CTT	T>C	0.194	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
B241R37	2R	10913754	A	G	AAT	A>G	ATT	T>C	0.333	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
B241R37	2R	15845216	A	C	TAA	A>C	TTA	T>G	0.217	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	tun	intron	CG8249	FBgn0034045
B241R37	2R	17080365	C	T	TCT	C>T	TCT	C>T	0.35	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG30460	intron	CG30460	FBgn0050460
B241R37	2R	18021484	G	C	TGA	G>C	TCA	C>G	0.349	somaticsniper,strelka	missense_variant	MODERATE	CG10910	exon	CG10910	FBgn0034289
B241R37	2R	21753976	T	G	TTG	T>G	TTG	T>G	0.222	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Grx-1	intergenic	intergenic	intergenic
B241R37	3L	1409648	G	C	AGT	G>C	ACT	C>G	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9168	intron	Ptp61F	FBgn0267487
B241R37	3L	1440123	A	G	GAA	A>G	TTC	T>C	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	SA-2	intron	Ptp61F	FBgn0267487
B241R37	3L	3731082	T	C	GTA	T>C	GTA	T>C	0.233	varscan2,somaticsniper	intron_variant	MODIFIER	CG32264	intron	CG32264	FBgn0052264
B241R37	3L	3867559	G	A	GGA	G>A	TCC	C>T	0.143	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45379	intergenic	intergenic	intergenic
B241R37	3L	3867560	A	G	GAG	A>G	CTC	T>C	0.143	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45379	intergenic	intergenic	intergenic
B241R37	3L	4216943	A	G	CAG	A>G	CTG	T>C	0.0476	mutect2,strelka	missense_variant	MODERATE	CG43367	exon_18	CG43367	FBgn0263110
B241R37	3L	5530622	A	C	AAT	A>C	ATT	T>G	0.3	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Lkr	intergenic	intergenic	intergenic
B241R37	3L	6155091	A	G	AAA	A>G	TTT	T>C	0.194	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Cpr65Ax2	exon_1	CR45421	FBgn0266970
B241R37	3L	9392269	C	G	TCG	C>G	TCG	C>G	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CG4080	intron	CG4080	FBgn0035983
B241R37	3L	10493985	G	T	TGT	G>T	ACA	C>A	0.163	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	S-Lap4	intron	Rbfox1	FBgn0052062
B241R37	3L	10546390	C	A	GCA	C>A	GCA	C>A	0.143	varscan2,somaticsniper	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
B241R37	3L	11227993	T	G	ATA	T>G	ATA	T>G	0.273	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	CG42671	exon_7	CG42671	FBgn0261553
B241R37	3L	15885470	G	A	GGA	G>A	TCC	C>T	0.133	somaticsniper,strelka	intron_variant	MODIFIER	pHCl	exon_1	CR44050	FBgn0264842
B241R37	3L	16506319	T	C	GTC	T>C	GTC	T>C	0.355	somaticsniper,strelka	intron_variant	MODIFIER	CG43373	intron	CG43373	FBgn0263131
B241R37	3L	19468243	T	G	CTA	T>G	CTA	T>G	0.321	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14095	intergenic	intergenic	intergenic
B241R37	3R	3637503	G	T	GGC	G>T	GCC	C>A	0.18	somaticsniper,strelka	intergenic_region	MODIFIER	Alg-2-Tim17b	intergenic	intergenic	intergenic
B241R37	3R	7405143	G	C	CGT	G>C	ACG	C>G	0.293	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	Ir84a	intergenic	intergenic	intergenic
B241R37	3R	10212979	G	A	AGC	G>A	GCT	C>T	0.239	mutect2,varscan2,somaticsniper,strelka,freebayes	5_prime_UTR_variant	MODIFIER	Timp	exon_1	Timp	FBgn0025879
B241R37	3R	11457834	C	G	TCT	C>G	TCT	C>G	0.343	varscan2,somaticsniper	5_prime_UTR_variant	MODIFIER	PGRP-LB	5UTR	PGRP-LB	FBgn0037906
B241R37	3R	12118879	C	T	ACA	C>T	ACA	C>T	0.182	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG4702	intergenic	intergenic	intergenic
B241R37	3R	14285559	G	A	CGA	G>A	TCG	C>T	0.24	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45596	intron	trx	FBgn0003862
B241R37	3R	17762370	C	G	TCG	C>G	TCG	C>G	0.0685	mutect2,strelka	5_prime_UTR_variant	MODIFIER	TyrR	exon_1	TyrR	FBgn0038542
B241R37	3R	20803373	C	T	GCC	C>T	GCC	C>T	0.255	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Syp	intron	Syp	FBgn0038826
B241R37	3R	23461567	G	A	CGT	G>A	ACG	C>T	0.0652	mutect2,strelka	intron_variant	MODIFIER	CG4374	intron	CG4374	FBgn0039078
B241R37	3R	24275276	C	A	CCA	C>A	CCA	C>A	0.361	somaticsniper,strelka	splice_region_variant	LOW	Orct2	3UTR	Orct2	FBgn0086365
B241R37	3R	28933543	G	T	TGC	G>T	GCA	C>A	0.342	varscan2,somaticsniper	intron_variant	MODIFIER	CG14521	intron	DIP-gamma	FBgn0039617
B241R37	X	10126736	C	G	ACC	C>G	ACC	C>G	0.25	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	snoRNA:Me18S-A627	ncRNA	CR44894	FBgn0266199
B241R37	X	20084121	G	T	TGT	G>T	ACA	C>A	0.208	somaticsniper,strelka	intergenic_region	MODIFIER	Dop2R-CR45628	intergenic	intergenic	intergenic
B241R39	2L	1218066	A	C	TAA	A>C	TTA	T>G	0.212	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45346	intergenic	intergenic	intergenic
B241R39	2L	2721988	C	T	TCT	C>T	TCT	C>T	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31689	intergenic	intergenic	intergenic
B241R39	2L	4241068	T	A	GTC	T>A	GTC	T>A	0.324	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45720	intergenic	intergenic	intergenic
B241R39	2L	10108116	A	G	GAG	A>G	CTC	T>C	0.273	somaticsniper,strelka	intron_variant	MODIFIER	CG44153	intron	CG34109	FBgn0083945
B241R39	2L	10441810	C	T	GCA	C>T	GCA	C>T	0.308	somaticsniper,strelka	upstream_gene_variant	MODIFIER	loh	intergenic	intergenic	intergenic
B241R39	2L	10441811	A	C	CAA	A>C	TTG	T>G	0.308	somaticsniper,strelka	upstream_gene_variant	MODIFIER	loh	intergenic	intergenic	intergenic
B241R39	2L	11491208	G	T	GGG	G>T	CCC	C>A	0.265	somaticsniper,strelka	downstream_gene_variant	MODIFIER	sala	intergenic	intergenic	intergenic
B241R39	2L	12351960	G	T	AGG	G>T	CCT	C>A	0.529	mutect2,varscan2,somaticsniper,strelka,freebayes	5_prime_UTR_premature_start_codon_gain_variant	LOW	bru-2	5UTR	bru2	FBgn0262475
B241R39	2L	13131597	T	A	CTA	T>A	CTA	T>A	0.194	somaticsniper,strelka	synonymous_variant	LOW	CG5122	exon_2	CG5122	FBgn0032471
B241R39	2L	15212232	T	A	ATC	T>A	ATC	T>A	0.0976	mutect2,strelka	upstream_gene_variant	MODIFIER	CG43230	intergenic	intergenic	intergenic
B241R39	2L	16339638	T	G	CTG	T>G	CTG	T>G	0.268	varscan2,somaticsniper	missense_variant	MODERATE	CG42266	exon_2	CG42266	FBgn0259151
B241R39	2L	17886700	T	A	TTA	T>A	TTA	T>A	0.0526	mutect2,strelka	intergenic_region	MODIFIER	CadN2-CR43420	intergenic	intergenic	intergenic
B241R39	2L	18235198	T	A	CTG	T>A	CTG	T>A	0.104	mutect2,strelka	intron_variant	MODIFIER	CG42750	intron	CG42750	FBgn0261804
B241R39	2L	18926684	A	G	TAT	A>G	ATA	T>C	0.227	somaticsniper,strelka	intron_variant	MODIFIER	ssp3	intron	ssp3	FBgn0032723
B241R39	2R	7754649	G	T	CGA	G>T	TCG	C>A	0.119	varscan2,strelka	intron_variant	MODIFIER	CG30497	intron	CG45093	FBgn0266526
B241R39	2R	8379951	C	T	GCA	C>T	GCA	C>T	0.184	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	pdm3	intron	pdm3	FBgn0261588
B241R39	2R	10510261	T	G	TTT	T>G	TTT	T>G	0.345	somaticsniper,strelka	downstream_gene_variant	MODIFIER	lola	intron	lola	FBgn0283521
B241R39	2R	11080697	T	C	GTC	T>C	GTC	T>C	0.185	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG43188	intron	luna	FBgn0040765
B241R39	2R	11080700	C	A	ACC	C>A	ACC	C>A	0.207	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG43188	intron	luna	FBgn0040765
B241R39	2R	11489765	G	C	TGT	G>C	ACA	C>G	0.155	somaticsniper,strelka	intron_variant	MODIFIER	inv	intron	inv	FBgn0001269
B241R39	2R	13922597	T	A	CTC	T>A	CTC	T>A	0.263	somaticsniper,strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
B241R39	2R	14019186	G	C	CGG	G>C	CCG	C>G	0.25	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	mam	intron	mam	FBgn0002643
B241R39	2R	18476450	A	G	TAC	A>G	GTA	T>C	0.194	somaticsniper,strelka	intron_variant	MODIFIER	CG30116	intron	CG30116	FBgn0028496
B241R39	2R	18476451	C	A	ACA	C>A	ACA	C>A	0.188	somaticsniper,strelka	intron_variant	MODIFIER	CG30116	intron	CG30116	FBgn0028496
B241R39	2R	20182601	G	C	AGT	G>C	ACT	C>G	0.143	varscan2,somaticsniper	intergenic_region	MODIFIER	CR45229-CG16894	intergenic	intergenic	intergenic
B241R39	2R	20505202	C	T	TCT	C>T	TCT	C>T	0.108	mutect2,strelka	missense_variant	MODERATE	Obp57a	exon_1	Obp57a	FBgn0043535
B241R39	3L	4898078	C	T	CCC	C>T	CCC	C>T	0.171	somaticsniper,strelka	synonymous_variant	LOW	CG13705	exon	CG13705	FBgn0035582
B241R39	3L	7984021	T	A	GTC	T>A	GTC	T>A	0.242	varscan2,somaticsniper	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
B241R39	3L	8368173	T	G	GTT	T>G	GTT	T>G	0.239	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	ImpE1	intergenic	intergenic	intergenic
B241R39	3L	9715945	G	C	AGC	G>C	GCT	C>G	0.167	somaticsniper,strelka	missense_variant	MODERATE	vsg	exon	vsg	FBgn0045823
B241R39	3L	10785807	T	C	GTT	T>C	GTT	T>C	0.194	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR44545	intergenic	intergenic	intergenic
B241R39	3L	11289286	C	A	GCT	C>A	GCT	C>A	0.0606	mutect2,strelka	missense_variant	MODERATE	CG6175	exon	CG6175	FBgn0036152
B241R39	3L	19052278	C	A	TCA	C>A	TCA	C>A	0.145	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Acp76A	intergenic	intergenic	intergenic
B241R39	3L	19052279	A	G	CAG	A>G	CTG	T>C	0.145	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Acp76A	intergenic	intergenic	intergenic
B241R39	3R	3272506	A	T	TAA	A>T	TTA	T>A	0.15	somaticsniper,strelka	intergenic_region	MODIFIER	CG45783-spok	intergenic	intergenic	intergenic
B241R39	3R	4693026	C	A	GCT	C>A	GCT	C>A	0.217	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG33927	intron	CG43427	FBgn0263346
B241R39	3R	7159546	T	C	GTA	T>C	GTA	T>C	0.176	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	MAGE	exon_2	CR45909	FBgn0267569
B241R39	3R	18064130	G	T	GGG	G>T	CCC	C>A	0.176	varscan2,somaticsniper	intergenic_region	MODIFIER	htl-CG14317	intergenic	intergenic	intergenic
B241R39	3R	18655328	C	T	GCT	C>T	GCT	C>T	0.075	mutect2,strelka	synonymous_variant	LOW	CG31224	exon_3	CG31224	FBgn0051224
B241R39	3R	21925358	C	A	GCG	C>A	GCG	C>A	0.154	varscan2,somaticsniper	intergenic_region	MODIFIER	CG17843-Eip93F	intergenic	intergenic	intergenic
B241R39	3R	26619387	A	C	GAG	A>C	CTC	T>G	0.19	somaticsniper,strelka	synonymous_variant	LOW	TwdlM	exon	TwdlM	FBgn0039434
B241R39	3R	26619402	A	C	GAG	A>C	CTC	T>G	0.241	somaticsniper,strelka	synonymous_variant	LOW	TwdlM	exon	TwdlM	FBgn0039434
B241R39	3R	26653439	G	T	TGT	G>T	ACA	C>A	0.115	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Tb	intron	beat-VII	FBgn0250908
B241R39	3R	31709196	T	C	CTC	T>C	CTC	T>C	0.211	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR45052	intergenic	intergenic	intergenic
B241R39	X	11382838	C	T	CCA	C>T	CCA	C>T	0.286	somaticsniper,strelka	upstream_gene_variant	MODIFIER	dlg1	intron	dlg1	FBgn0001624
B241R39	X	16644992	A	G	TAG	A>G	CTA	T>C	0.2	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	SmG	intron	mthl1	FBgn0030766
B241R41-1	2L	4649272	G	A	AGC	G>A	GCT	C>T	0.192	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG3355	intergenic	intergenic	intergenic
B241R41-1	2L	6024998	A	G	AAT	A>G	ATT	T>C	0.5	varscan2,strelka	upstream_gene_variant	MODIFIER	CG9107	intergenic	intergenic	intergenic
B241R41-1	2L	8631927	T	G	TTT	T>G	TTT	T>G	0.2	somaticsniper,strelka	intron_variant	MODIFIER	Sema-1a	intron	Sema-1a	FBgn0011259
B241R41-1	2L	8784498	C	A	GCA	C>A	GCA	C>A	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG9468	intergenic	intergenic	intergenic
B241R41-1	2L	9738240	G	T	GGG	G>T	CCC	C>A	0.174	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG13117	intron	Nckx30C	FBgn0028704
B241R41-1	2L	10679097	A	G	AAG	A>G	CTT	T>C	0.286	varscan2,somaticsniper	synonymous_variant	LOW	CG17104	exon	CG17104	FBgn0040496
B241R41-1	2L	12406340	C	T	ACA	C>T	ACA	C>T	0.269	somaticsniper,strelka	upstream_gene_variant	MODIFIER	vir-1	intron	vir-1	FBgn0043841
B241R41-1	2L	13293349	T	C	TTG	T>C	TTG	T>C	0.294	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG16824	3UTR	CG16824	FBgn0040973
B241R41-1	2L	13293350	G	A	TGA	G>A	TCA	C>T	0.294	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG16824	3UTR	CG16824	FBgn0040973
B241R41-1	2L	16185707	A	G	CAA	A>G	TTG	T>C	0.269	varscan2,strelka	intron_variant	MODIFIER	Ca-alpha1D	intron	Ca-alpha1D	FBgn0001991
B241R41-1	2L	16508502	G	A	TGT	G>A	ACA	C>T	0.233	freebayes	3_prime_UTR_variant	MODIFIER	CG5953	3UTR	CG5953	FBgn0032587
B241R41-1	2L	17772904	C	G	CCC	C>G	CCC	C>G	0.312	varscan2,somaticsniper	intron_variant	MODIFIER	CadN	intron	CadN	FBgn0015609
B241R41-1	2L	23333276	G	T	TGA	G>T	TCA	C>A	0.233	somaticsniper,strelka	intergenic_region	MODIFIER	CR42530-CR41519	intergenic	intergenic	intergenic
B241R41-1	2L	23333277	A	T	GAT	A>T	ATC	T>A	0.233	somaticsniper,strelka	intergenic_region	MODIFIER	CR42530-CR41519	intergenic	intergenic	intergenic
B241R41-1	2R	1734398	G	C	GGG	G>C	CCC	C>G	0.414	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG41520	intron	CG41520	FBgn0087011
B241R41-1	2R	11050270	T	G	GTG	T>G	GTG	T>G	0.278	varscan2,somaticsniper	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R41-1	2R	12043765	A	G	TAG	A>G	CTA	T>C	0.222	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Drep-1	intergenic	intergenic	intergenic
B241R41-1	2R	12963301	T	G	GTT	T>G	GTT	T>G	0.3	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Psc	intergenic	intergenic	intergenic
B241R41-1	2R	14265792	G	A	GGG	G>A	CCC	C>T	0.207	somaticsniper,strelka	upstream_gene_variant	MODIFIER	conv	intron	CG8547	FBgn0033919
B241R41-1	2R	20109889	C	T	GCG	C>T	GCG	C>T	0.316	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	18w	intergenic	intergenic	intergenic
B241R41-1	2R	20182601	G	C	AGT	G>C	ACT	C>G	0.267	varscan2,somaticsniper	intergenic_region	MODIFIER	CR45229-CG16894	intergenic	intergenic	intergenic
B241R41-1	2R	21911985	C	A	CCC	C>A	CCC	C>A	0.3	varscan2,somaticsniper	intron_variant	MODIFIER	Fili	intron	Fili	FBgn0085397
B241R41-1	2R	21956951	T	G	TTG	T>G	TTG	T>G	0.375	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43405	intergenic	intergenic	intergenic
B241R41-1	3L	1253248	C	T	TCA	C>T	TCA	C>T	0.467	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9133	intron	CG9133	FBgn0035198
B241R41-1	3L	7344658	C	A	ACA	C>A	ACA	C>A	0.139	mutect2,strelka	upstream_gene_variant	MODIFIER	qm	intron	CG8596	FBgn0035767
B241R41-1	3L	10195308	C	G	TCT	C>G	TCT	C>G	0.222	varscan2,somaticsniper	intron_variant	MODIFIER	ect	intron	ect	FBgn0000451
B241R41-1	3L	11043204	A	C	CAA	A>C	TTG	T>G	0.214	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG43693	intron	CG43693	FBgn0263776
B241R41-1	3L	16249371	G	T	AGA	G>T	TCT	C>A	0.19	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG13055	intergenic	intergenic	intergenic
B241R41-1	3R	17243184	A	G	TAT	A>G	ATA	T>C	0.227	somaticsniper,strelka	intron_variant	MODIFIER	beat-IIb	intron	beat-IIb	FBgn0038494
B241R41-1	3R	18096754	T	A	CTA	T>A	CTA	T>A	0.241	varscan2,somaticsniper	intron_variant	MODIFIER	sr	intron	sr	FBgn0003499
B241R41-1	3R	18442855	G	C	TGC	G>C	GCA	C>G	0.304	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	fru	intron	fru	FBgn0004652
B241R41-1	3R	27077478	T	C	GTA	T>C	GTA	T>C	0.279	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG14257	intron	CG14257	FBgn0039479
B241R41-1	3R	31152358	C	A	TCT	C>A	TCT	C>A	0.2	somaticsniper,strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
B241R41-1	X	16648195	C	T	GCA	C>T	GCA	C>T	0.2	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	mthl1	exon_2	mthl1	FBgn0030766
B241R41-1	Y	3520044	A	T	TAA	A>T	TTA	T>A	0.357	somaticsniper,strelka	intergenic_region	MODIFIER	CR45780-Pp1-Y2	intergenic	intergenic	intergenic
B241R41-1	Y	3520045	A	T	AAA	A>T	TTT	T>A	0.357	somaticsniper,strelka	intergenic_region	MODIFIER	CR45780-Pp1-Y2	intergenic	intergenic	intergenic
B241R41-2	2L	611894	A	T	CAG	A>T	CTG	T>A	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43649	intergenic	intergenic	intergenic
B241R41-2	2L	1268910	G	A	GGC	G>A	GCC	C>T	0.154	mutect2,varscan2	intron_variant	MODIFIER	robo3	intron	robo3	FBgn0041097
B241R41-2	2L	1877497	C	T	GCG	C>T	GCG	C>T	0.5	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR44075	intron	CG31663	FBgn0051663
B241R41-2	2L	2031592	A	G	AAT	A>G	ATT	T>C	0.7	somaticsniper,strelka	upstream_gene_variant	MODIFIER	tRNA:G3:22BCb	intergenic	intergenic	intergenic
B241R41-2	2L	7132791	G	A	CGT	G>A	ACG	C>T	0.3	varscan2,somaticsniper	missense_variant	MODERATE	Pvf3	exon_1	Pvf3	FBgn0085407
B241R41-2	2L	9233833	G	A	CGC	G>A	GCG	C>T	0.5	somaticsniper,strelka	downstream_gene_variant	MODIFIER	tRNA:CR31885	intron	tai	FBgn0041092
B241R41-2	2L	9613030	A	C	AAA	A>C	TTT	T>G	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Trx-2	intergenic	intergenic	intergenic
B241R41-2	2L	10515785	T	A	TTA	T>A	TTA	T>A	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Lrr47	intron	Fatp	FBgn0267828
B241R41-2	2L	14720537	C	T	GCC	C>T	GCC	C>T	0.154	mutect2,varscan2	downstream_gene_variant	MODIFIER	CG42685	intergenic	intergenic	intergenic
B241R41-2	2L	15111293	C	G	ACA	C>G	ACA	C>G	0.333	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	stc	intron	CG15269	FBgn0028878
B241R41-2	2L	16826838	C	G	CCA	C>G	CCA	C>G	0.222	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	mdy	3UTR	mdy	FBgn0004797
B241R41-2	2L	18689170	G	C	AGG	G>C	CCT	C>G	0.4	mutect2,strelka	upstream_gene_variant	MODIFIER	msl-1	intergenic	intergenic	intergenic
B241R41-2	2L	23333276	G	T	TGA	G>T	TCA	C>A	0.273	somaticsniper,strelka	intergenic_region	MODIFIER	CR42530-CR41519	intergenic	intergenic	intergenic
B241R41-2	2L	23333277	A	T	GAT	A>T	ATC	T>A	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	CR42530-CR41519	intergenic	intergenic	intergenic
B241R41-2	2R	8627688	A	T	AAT	A>T	ATT	T>A	0.273	somaticsniper,strelka	upstream_gene_variant	MODIFIER	beta3GalTII	intergenic	intergenic	intergenic
B241R41-2	2R	14150252	G	T	AGG	G>T	CCT	C>A	0.222	mutect2,varscan2	missense_variant	MODERATE	Rcd1	exon_5	Rcd1	FBgn0033897
B241R41-2	2R	16752745	T	C	TTT	T>C	TTT	T>C	0.6	mutect2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	unc-104	3UTR	unc-104	FBgn0267002
B241R41-2	2R	24384208	C	A	TCA	C>A	TCA	C>A	0.273	mutect2,varscan2,somaticsniper,strelka	missense_variant	MODERATE	mAChR-A	exon_2	mAChR-A	FBgn0000037
B241R41-2	3L	1253248	C	T	TCA	C>T	TCA	C>T	0.6	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9133	intron	CG9133	FBgn0035198
B241R41-2	3L	1548443	G	A	GGC	G>A	GCC	C>T	0.333	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG32313	intron	Cct1	FBgn0041342
B241R41-2	3L	6692586	G	A	TGG	G>A	CCA	C>T	0.5	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	SP1173	5UTR	SP1173	FBgn0035710
B241R41-2	3L	6692587	G	A	GGG	G>A	CCC	C>T	0.5	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	SP1173	5UTR	SP1173	FBgn0035710
B241R41-2	3L	12001790	A	G	GAC	A>G	GTC	T>C	0.333	mutect2,somaticsniper	5_prime_UTR_variant	MODIFIER	Pop2	exon_2	Pop2	FBgn0036239
B241R41-2	3L	12481150	G	A	TGC	G>A	GCA	C>T	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33725	intron	CG10663	FBgn0036287
B241R41-2	3L	12886659	C	T	CCA	C>T	CCA	C>T	0.278	somaticsniper,strelka	synonymous_variant	LOW	CG14120	exon	CG14120	FBgn0036321
B241R41-2	3L	16925106	C	T	TCA	C>T	TCA	C>T	0.3	somaticsniper,strelka	synonymous_variant	LOW	CG13023	exon_2	CG13023	FBgn0036677
B241R41-2	3L	21875697	C	T	TCA	C>T	TCA	C>T	0.364	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	mub	intron	mub	FBgn0262737
B241R41-2	3L	23815260	T	G	ATA	T>G	ATA	T>G	0.5	somaticsniper,strelka	intergenic_region	MODIFIER	CG43968-CG40470	intergenic	intergenic	intergenic
B241R41-2	3L	23815263	C	T	ACC	C>T	ACC	C>T	0.5	somaticsniper,strelka	intergenic_region	MODIFIER	CG43968-CG40470	intergenic	intergenic	intergenic
B241R41-2	3L	25105622	A	G	TAG	A>G	CTA	T>C	0.222	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Set1	intergenic	intergenic	intergenic
B241R41-2	3R	2479	C	A	ACG	C>A	ACG	C>A	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
B241R41-2	3R	211230	C	T	TCG	C>T	TCG	C>T	0.833	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
B241R41-2	3R	16103591	T	C	GTC	T>C	GTC	T>C	0.286	mutect2,strelka	3_prime_UTR_variant	MODIFIER	Akt1	3UTR	Akt1	FBgn0010379
B241R41-2	3R	21837486	A	G	CAG	A>G	CTG	T>C	0.4	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Gr93a	intergenic	intergenic	intergenic
B241R41-2	3R	22260680	C	T	GCG	C>T	GCG	C>T	0.222	mutect2,varscan2	intron_variant	MODIFIER	SKIP	intron	SKIP	FBgn0051163
B241R41-2	3R	23066121	G	T	TGG	G>T	CCA	C>A	0.15	mutect2,strelka	upstream_gene_variant	MODIFIER	sav	intron	CG17111	FBgn0039048
B241R41-2	3R	24806811	T	C	GTA	T>C	GTA	T>C	0.2	mutect2,varscan2	missense_variant	MODERATE	CG5807	exon_7	lili	FBgn0027539
B241R41-2	3R	29366184	A	C	CAA	A>C	TTG	T>G	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG45546	intergenic	intergenic	intergenic
B241R41-2	X	2202648	C	A	CCT	C>A	CCT	C>A	0.333	mutect2,strelka	missense_variant	MODERATE	CG18031	exon_4	CG18031	FBgn0023550
B241R41-2	X	2410868	C	A	TCT	C>A	TCT	C>A	0.429	mutect2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG12496	5UTR	CG12496	FBgn0040385
B241R41-2	X	4139433	T	A	TTA	T>A	TTA	T>A	0.5	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Fas2	intron	Fas2	FBgn0000635
B241R41-2	X	5332470	A	T	AAA	A>T	TTT	T>A	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3309	intergenic	intergenic	intergenic
B241R41-2	X	9735296	C	A	ACA	C>A	ACA	C>A	1.0	somaticsniper,strelka	intron_variant	MODIFIER	Sp1	intron	Sp1	FBgn0020378
B241R41-2	X	13895701	C	T	TCC	C>T	TCC	C>T	0.294	freebayes	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
B241R41-2	X	17237031	G	C	GGG	G>C	CCC	C>G	0.667	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG8915	intron	f	FBgn0262111
B241R41-2	X	17397240	A	G	AAC	A>G	GTT	T>C	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	B-H1	intergenic	intergenic	intergenic
B241R41-2	X	17516018	T	C	ATT	T>C	ATT	T>C	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG43658	intron	CG43658	FBgn0263706
B241R41-2	X	19596399	A	G	TAA	A>G	TTA	T>C	0.6	somaticsniper,strelka	upstream_gene_variant	MODIFIER	RpS10b	intergenic	intergenic	intergenic
B241R41-2	X	19596406	G	T	TGG	G>T	CCA	C>A	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	RpS10b	intergenic	intergenic	intergenic
B241R41-2	X	20132231	G	A	TGG	G>A	CCA	C>T	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15322	intergenic	intergenic	intergenic
B241R41-2	X	21027772	G	A	TGA	G>A	TCA	C>T	1.0	somaticsniper,strelka	synonymous_variant	LOW	CG1532	exon_3	CG1532	FBgn0031143
B241R41-2	Y	36242	G	T	TGT	G>T	ACA	C>A	0.833	somaticsniper,strelka	intron_variant	MODIFIER	kl-5	intron	kl-5	FBgn0267433
B241R41-2	Y	3655996	C	A	CCA	C>A	CCA	C>A	0.667	somaticsniper,strelka	intron_variant	MODIFIER	Ccy	intron	CCY	FBgn0267592
B241R43	2L	3273115	A	C	TAC	A>C	GTA	T>G	0.333	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44484	intergenic	intergenic	intergenic
B241R43	2L	3273116	C	G	ACC	C>G	ACC	C>G	0.333	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44484	intergenic	intergenic	intergenic
B241R43	2L	7402640	C	G	ACT	C>G	ACT	C>G	0.267	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5160	intron	CG5171	FBgn0031907
B241R43	2L	9590087	C	T	GCA	C>T	GCA	C>T	0.333	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	CG3841	exon_2	CG3841	FBgn0032131
B241R43	2L	11761321	T	C	GTA	T>C	GTA	T>C	0.3	mutect2,strelka	intergenic_region	MODIFIER	Sfp33A1-CG14931	intergenic	intergenic	intergenic
B241R43	2L	12483888	C	T	ACC	C>T	ACC	C>T	0.235	somaticsniper,strelka	upstream_gene_variant	MODIFIER	bun	intron	bun	FBgn0259176
B241R43	2L	14961003	G	T	CGG	G>T	CCG	C>A	0.4	somaticsniper,strelka	intron_variant	MODIFIER	CG42313	intron	CG42313	FBgn0259213
B241R43	2L	15208392	G	A	CGA	G>A	TCG	C>T	0.5	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR43357	exon_1	CR44196	FBgn0265085
B241R43	2L	15208398	A	C	AAC	A>C	GTT	T>G	0.462	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR43357	exon_1	CR44196	FBgn0265085
B241R43	2L	15933573	T	G	ATT	T>G	ATT	T>G	0.229	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	beat-Ib	intron	beat-Ib	FBgn0028645
B241R43	2L	16607573	C	A	TCC	C>A	TCC	C>A	0.467	mutect2,varscan2,somaticsniper,strelka	synonymous_variant	LOW	CG4631	exon	CG4631	FBgn0032590
B241R43	2R	10840839	C	G	TCA	C>G	TCA	C>G	0.235	somaticsniper,strelka	synonymous_variant	LOW	CG30015	exon	CG30015	FBgn0050015
B241R43	2R	10913701	A	G	GAA	A>G	TTC	T>C	0.2	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
B241R43	2R	10913702	A	G	AAG	A>G	CTT	T>C	0.2	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
B241R43	2R	10977214	C	T	TCG	C>T	TCG	C>T	0.429	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	luna	intergenic	intergenic	intergenic
B241R43	2R	11739228	A	C	GAC	A>C	GTC	T>G	0.24	varscan2,somaticsniper	intergenic_region	MODIFIER	pyr-ths	intergenic	intergenic	intergenic
B241R43	2R	12493208	A	T	AAC	A>T	GTT	T>A	0.458	somaticsniper,strelka	upstream_gene_variant	MODIFIER	fdl	intron	fdl	FBgn0045063
B241R43	2R	13552930	C	G	TCT	C>G	TCT	C>G	0.308	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33156	intron	CG33156	FBgn0053156
B241R43	2R	13552931	T	A	CTA	T>A	CTA	T>A	0.308	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33156	intron	CG33156	FBgn0053156
B241R43	2R	16168595	G	A	CGA	G>A	TCG	C>T	0.161	varscan2,somaticsniper	missense_variant	MODERATE	lbk	exon	lbk	FBgn0034083
B241R43	2R	16516521	G	T	TGA	G>T	TCA	C>A	0.25	varscan2,somaticsniper	5_prime_UTR_variant	MODIFIER	Sema-2a	exon_1	Sema-2a	FBgn0011260
B241R43	2R	20067553	G	T	AGG	G>T	CCT	C>A	0.158	mutect2,strelka	intergenic_region	MODIFIER	CR44631-CR44632	intergenic	intergenic	intergenic
B241R43	2R	24309691	C	A	CCC	C>A	CCC	C>A	0.316	varscan2,somaticsniper	intron_variant	MODIFIER	betaTub60D	intron	betaTub60D	FBgn0003888
B241R43	3L	2313933	C	G	ACC	C>G	ACC	C>G	0.167	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45427	intergenic	intergenic	intergenic
B241R43	3L	2709724	T	C	TTC	T>C	TTC	T>C	0.292	mutect2,strelka	intron_variant	MODIFIER	Fife	intron	Fife	FBgn0264606
B241R43	3L	2912907	A	G	GAA	A>G	TTC	T>C	0.294	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG9970	intron	Shab	FBgn0262593
B241R43	3L	2912908	A	G	AAT	A>G	ATT	T>C	0.294	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG9970	intron	Shab	FBgn0262593
B241R43	3L	4375331	G	C	AGA	G>C	TCT	C>G	0.263	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44360	intron	DopEcR	FBgn0035538
B241R43	3L	4758422	A	G	AAT	A>G	ATT	T>C	0.3	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG13711	3UTR	CG13711	FBgn0035572
B241R43	3L	5525932	C	A	ACA	C>A	ACA	C>A	0.375	varscan2,somaticsniper	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
B241R43	3L	6188077	G	A	CGT	G>A	ACG	C>T	0.143	varscan2,strelka	synonymous_variant	LOW	D19A	exon_1	D19A	FBgn0022935
B241R43	3L	6188085	A	G	TAC	A>G	GTA	T>C	0.143	varscan2,strelka	missense_variant	MODERATE	D19A	exon_1	D19A	FBgn0022935
B241R43	3L	7651961	T	A	TTT	T>A	TTT	T>A	0.2	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG7492	3UTR	CG7492	FBgn0035807
B241R43	3L	11414953	T	C	GTA	T>C	GTA	T>C	0.263	varscan2,somaticsniper	intergenic_region	MODIFIER	CR44363-CG7560	intergenic	intergenic	intergenic
B241R43	3L	19052278	C	A	TCA	C>A	TCA	C>A	0.267	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Acp76A	intergenic	intergenic	intergenic
B241R43	3L	19052279	A	G	CAG	A>G	CTG	T>C	0.267	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Acp76A	intergenic	intergenic	intergenic
B241R43	3L	24256022	A	T	AAC	A>T	GTT	T>A	0.212	somaticsniper,strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
B241R43	3L	24256052	A	T	AAA	A>T	TTT	T>A	0.206	somaticsniper,strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
B241R43	3R	9730108	G	A	CGG	G>A	CCG	C>T	0.231	varscan2,strelka	5_prime_UTR_premature_start_codon_gain_variant	LOW	FoxP	5UTR	FoxP	FBgn0262477
B241R43	3R	9730109	G	T	GGA	G>T	TCC	C>A	0.231	varscan2,strelka	5_prime_UTR_variant	MODIFIER	FoxP	5UTR	FoxP	FBgn0262477
B241R43	3R	10799950	A	C	AAT	A>C	ATT	T>G	0.3	somaticsniper,strelka	missense_variant	MODERATE	CG14692	exon_11	CG14692	FBgn0037836
B241R43	3R	14357932	A	G	AAA	A>G	TTT	T>C	0.184	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG31320	intron	NK7.1	FBgn0024321
B241R43	3R	15174505	C	A	ACT	C>A	ACT	C>A	0.368	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	Mf	intron	Mf	FBgn0038294
B241R43	3R	17657620	A	C	CAT	A>C	ATG	T>G	0.333	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45223	intron	CG14322	FBgn0038532
B241R43	3R	17657625	C	T	CCG	C>T	CCG	C>T	0.238	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45223	intron	CG14322	FBgn0038532
B241R43	3R	17657630	G	C	TGT	G>C	ACA	C>G	0.263	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45223	intron	CG14322	FBgn0038532
B241R43	3R	18306210	C	A	ACG	C>A	ACG	C>A	0.158	mutect2,strelka	upstream_gene_variant	MODIFIER	CG18600	intron	PKD	FBgn0038603
B241R43	3R	19069531	T	C	TTC	T>C	TTC	T>C	0.308	varscan2,somaticsniper	intron_variant	MODIFIER	cdi	intron	cdi	FBgn0004876
B241R43	3R	23225183	A	G	AAG	A>G	CTT	T>C	0.529	somaticsniper,strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
B241R43	3R	27890056	A	C	AAA	A>C	TTT	T>G	0.222	varscan2,somaticsniper	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
B241R43	3R	31428325	C	A	CCC	C>A	CCC	C>A	0.409	somaticsniper,strelka	intron_variant	MODIFIER	Gprk2	intron	Gprk2	FBgn0261988
B241R43	X	6109992	A	G	AAG	A>G	CTT	T>C	0.5	mutect2,strelka	intron_variant	MODIFIER	Ca-alpha1T	intron	Ca-alpha1T	FBgn0264386
B241R43	X	8559232	C	G	TCC	C>G	TCC	C>G	0.308	varscan2,somaticsniper	missense_variant	MODERATE	CG12112	exon	CG12112	FBgn0030048
B241R43	X	8946272	C	G	GCA	C>G	GCA	C>G	0.3	somaticsniper,strelka	intron_variant	MODIFIER	rdgA	intron	rdgA	FBgn0261549
B241R43	X	8946274	A	G	AAA	A>G	TTT	T>C	0.3	somaticsniper,strelka	intron_variant	MODIFIER	rdgA	intron	rdgA	FBgn0261549
B241R43	X	12093451	G	C	AGC	G>C	GCT	C>G	0.292	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR32658	ncRNA	CR43960	FBgn0264675
B241R45	2L	5814735	A	G	AAG	A>G	CTT	T>C	0.235	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44575	intergenic	intergenic	intergenic
B241R45	2L	7228581	G	C	GGG	G>C	CCC	C>G	0.353	mutect2,somaticsniper,strelka,freebayes	3_prime_UTR_variant	MODIFIER	CG43799	3UTR	CG43799	FBgn0264343
B241R45	2L	7335774	T	G	ATG	T>G	ATG	T>G	0.238	varscan2,somaticsniper	intron_variant	MODIFIER	Wnt6	intron	Wnt6	FBgn0031902
B241R45	2L	7603165	G	T	TGT	G>T	ACA	C>A	0.267	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45370	intergenic	intergenic	intergenic
B241R45	2L	9948461	C	T	ACG	C>T	ACG	C>T	0.103	mutect2,strelka	upstream_gene_variant	MODIFIER	CG5853	intergenic	intergenic	intergenic
B241R45	2L	12551855	C	T	ACA	C>T	ACA	C>T	0.2	somaticsniper,strelka	intergenic_region	MODIFIER	bun-CR44598	intergenic	intergenic	intergenic
B241R45	2L	17441570	C	A	ACT	C>A	ACT	C>A	0.103	varscan2,strelka	missense_variant	MODERATE	dl	exon	dl	FBgn0260632
B241R45	2L	17441574	C	T	ACT	C>T	ACT	C>T	0.0833	varscan2,strelka	synonymous_variant	LOW	dl	exon	dl	FBgn0260632
B241R45	2L	17607549	T	C	ATA	T>C	ATA	T>C	0.3	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44412	intergenic	intergenic	intergenic
B241R45	2L	18158925	T	C	ATG	T>C	ATG	T>C	0.188	varscan2,somaticsniper	5_prime_UTR_variant	MODIFIER	CG7200	5UTR	CG7200	FBgn0032671
B241R45	2L	18204222	T	C	GTT	T>C	GTT	T>C	0.333	varscan2,somaticsniper	synonymous_variant	LOW	CG42750	exon_7	CG42750	FBgn0261804
B241R45	2L	19178879	G	C	AGT	G>C	ACT	C>G	0.206	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	brat	3UTR	brat	FBgn0010300
B241R45	2L	19949715	A	C	AAT	A>C	ATT	T>G	0.222	varscan2,somaticsniper	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
B241R45	2L	19949716	T	A	ATC	T>A	ATC	T>A	0.192	varscan2,somaticsniper	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
B241R45	2L	21943770	T	G	CTT	T>G	CTT	T>G	0.364	mutect2,varscan2,somaticsniper,strelka,freebayes	intergenic_region	MODIFIER	CR45334-CR45704	intergenic	intergenic	intergenic
B241R45	2R	9340930	G	A	AGC	G>A	GCT	C>T	0.318	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Or45a	intron	CG13954	FBgn0033405
B241R45	2R	9340931	C	T	GCA	C>T	GCA	C>T	0.318	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Or45a	intron	CG13954	FBgn0033405
B241R45	2R	13768182	G	A	GGA	G>A	TCC	C>T	0.242	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Cpr50Ca	intergenic	intergenic	intergenic
B241R45	2R	14954625	C	A	TCC	C>A	TCC	C>A	0.28	somaticsniper,strelka	upstream_gene_variant	MODIFIER	aPKC	intron	aPKC	FBgn0261854
B241R45	2R	14954626	C	T	CCA	C>T	CCA	C>T	0.28	somaticsniper,strelka	upstream_gene_variant	MODIFIER	aPKC	intron	aPKC	FBgn0261854
B241R45	2R	14954628	G	T	AGA	G>T	TCT	C>A	0.28	somaticsniper,strelka	upstream_gene_variant	MODIFIER	aPKC	intron	aPKC	FBgn0261854
B241R45	2R	15534757	C	T	TCT	C>T	TCT	C>T	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Khc-73	intron	CG30471	FBgn0050471
B241R45	2R	15641566	T	A	ATG	T>A	ATG	T>A	0.214	varscan2,somaticsniper	intron_variant	MODIFIER	CG42524	intron	CG42524	FBgn0260429
B241R45	2R	20605932	C	A	ACA	C>A	ACA	C>A	0.258	somaticsniper,strelka	splice_region_variant	LOW	bl	3UTR	HnRNP-K	FBgn0267791
B241R45	2R	22786439	A	G	CAC	A>G	GTG	T>C	0.231	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG30270	intron	CG42260	FBgn0259145
B241R45	2R	23976268	T	A	CTT	T>A	CTT	T>A	0.217	varscan2,somaticsniper	missense_variant	MODERATE	Gadd34	exon_1	Gadd34	FBgn0034948
B241R45	3L	4283806	C	G	CCA	C>G	CCA	C>G	0.184	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG11583	intergenic	intergenic	intergenic
B241R45	3L	4751291	T	C	ATG	T>C	ATG	T>C	0.212	freebayes	upstream_gene_variant	MODIFIER	CR43882	intron	RhoGEF64C	FBgn0035574
B241R45	3L	9381265	A	T	GAA	A>T	TTC	T>A	0.25	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Hsp26	intergenic	intergenic	intergenic
B241R45	3L	10203944	A	G	AAA	A>G	TTT	T>C	0.188	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	ect	intergenic	intergenic	intergenic
B241R45	3L	10926063	T	C	GTT	T>C	GTT	T>C	0.24	somaticsniper,strelka	intergenic_region	MODIFIER	Aps-CR45248	intergenic	intergenic	intergenic
B241R45	3L	11297945	G	A	TGT	G>A	ACA	C>T	0.286	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG6175	intergenic	intergenic	intergenic
B241R45	3L	20816441	T	C	ATT	T>C	ATT	T>C	0.182	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Pka-R1	5UTR	Pka-R1	FBgn0259243
B241R45	3R	5671787	G	A	AGC	G>A	GCT	C>T	0.143	mutect2,varscan2,strelka	upstream_gene_variant	MODIFIER	Xe7	intron	Atg17	FBgn0037363
B241R45	3R	11356002	T	G	TTT	T>G	TTT	T>G	0.3	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	KP78a	intron	pros	FBgn0004595
B241R45	3R	13670401	G	T	GGT	G>T	ACC	C>A	0.154	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	B52	intron	Task6	FBgn0038165
B241R45	3R	20673240	A	T	CAT	A>T	ATG	T>A	0.333	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45024	intergenic	intergenic	intergenic
B241R45	3R	24762425	G	A	GGT	G>A	ACC	C>T	0.214	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	asp	intron	AstA	FBgn0015591
B241R45	3R	25398697	A	T	TAG	A>T	CTA	T>A	0.288	somaticsniper,strelka	synonymous_variant	LOW	Muc96D	exon	Muc96D	FBgn0051439
B241R45	3R	25801120	A	G	CAT	A>G	ATG	T>C	0.308	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43847	intergenic	intergenic	intergenic
B241R45	3R	29181533	C	G	GCT	C>G	GCT	C>G	0.204	varscan2,somaticsniper	missense_variant	MODERATE	CG14509	exon_2	CG14509	FBgn0039647
B241R45	3R	30333538	C	A	TCT	C>A	TCT	C>A	0.171	mutect2,strelka	intron_variant	MODIFIER	hdc	intron	hdc	FBgn0010113
B241R45	X	5584610	T	G	GTT	T>G	GTT	T>G	0.182	somaticsniper,strelka	intergenic_region	MODIFIER	Vsx2-Vsx1	intergenic	intergenic	intergenic
B241R45	X	13046713	T	G	GTT	T>G	GTT	T>G	0.212	varscan2,somaticsniper	intron_variant	MODIFIER	rad	intron	rad	FBgn0265597
B241R49	2L	3273115	A	C	TAC	A>C	GTA	T>G	0.263	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44484	intergenic	intergenic	intergenic
B241R49	2L	3273116	C	G	ACC	C>G	ACC	C>G	0.263	varscan2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44484	intergenic	intergenic	intergenic
B241R49	2L	6273821	A	G	CAG	A>G	CTG	T>C	0.25	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR42735	intron	Ddr	FBgn0053531
B241R49	2L	6506920	G	T	AGC	G>T	GCT	C>A	0.167	mutect2,strelka	downstream_gene_variant	MODIFIER	CR44775	intron	CG31637	FBgn0051637
B241R49	2L	7048141	T	A	CTT	T>A	CTT	T>A	0.0968	mutect2,strelka	upstream_gene_variant	MODIFIER	milt	intron	milt	FBgn0262872
B241R49	2L	11585287	C	T	CCC	C>T	CCC	C>T	0.231	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44496	intron	kek2	FBgn0015400
B241R49	2L	11818944	G	T	GGG	G>T	CCC	C>A	0.273	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Pde1c	intron	Pde1c	FBgn0264815
B241R49	2L	14031740	T	G	CTC	T>G	CTC	T>G	0.333	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG18095	intergenic	intergenic	intergenic
B241R49	2L	14471368	T	A	ATT	T>A	ATT	T>A	0.3	freebayes	intergenic_region	MODIFIER	CR44730-CR44731	intergenic	intergenic	intergenic
B241R49	2L	14792633	C	A	TCA	C>A	TCA	C>A	0.214	mutect2,varscan2,strelka	downstream_gene_variant	MODIFIER	CG18420	intergenic	intergenic	intergenic
B241R49	2L	15245340	C	T	GCG	C>T	GCG	C>T	0.364	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	dao	intron	ZnT35C	FBgn0028516
B241R49	2L	17606839	T	C	TTG	T>C	TTG	T>C	0.333	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Sytalpha	exon_1	CR44412	FBgn0265585
B241R49	2L	20238427	T	G	GTC	T>G	GTC	T>G	0.312	varscan2,somaticsniper	intergenic_region	MODIFIER	CG10651-CR40341	intergenic	intergenic	intergenic
B241R49	2L	21233164	T	A	CTG	T>A	CTG	T>A	0.235	somaticsniper,strelka	synonymous_variant	LOW	CG31626	ncRNA	CR45713	FBgn0267277
B241R49	2R	11378578	T	C	GTG	T>C	GTG	T>C	0.222	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG13203	intron	Tsp47F	FBgn0033629
B241R49	2R	11642970	T	A	CTG	T>A	CTG	T>A	0.5	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	CG9003	3UTR	CG9003	FBgn0033639
B241R49	2R	20494574	T	C	GTG	T>C	GTG	T>C	0.093	mutect2,strelka	upstream_gene_variant	MODIFIER	CR44643	intergenic	intergenic	intergenic
B241R49	2R	23979917	G	A	CGC	G>A	GCG	C>T	0.3	varscan2,somaticsniper	5_prime_UTR_variant	MODIFIER	Sox14	5UTR	Sox14	FBgn0005612
B241R49	3L	637526	G	T	AGA	G>T	TCT	C>A	0.0882	mutect2,strelka	upstream_gene_variant	MODIFIER	ban	exon_2	CR43423	FBgn0263342
B241R49	3L	1263010	A	C	GAA	A>C	TTC	T>G	0.261	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG9134	intron	tfc	FBgn0035199
B241R49	3L	4940612	A	T	GAA	A>T	TTC	T>A	0.235	varscan2,somaticsniper	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
B241R49	3L	4940613	A	C	AAG	A>C	CTT	T>G	0.235	varscan2,somaticsniper	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
B241R49	3L	5522821	C	A	ACC	C>A	ACC	C>A	0.217	somaticsniper,strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
B241R49	3L	5522822	C	T	CCC	C>T	CCC	C>T	0.217	somaticsniper,strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
B241R49	3L	9022242	G	T	AGA	G>T	TCT	C>A	0.267	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Doc2	intergenic	intergenic	intergenic
B241R49	3L	11397819	T	C	TTT	T>C	TTT	T>C	0.19	varscan2,somaticsniper	missense_variant	MODERATE	CG44362	exon	CG44362	FBgn0265469
B241R49	3L	17294789	G	T	AGC	G>T	GCT	C>A	0.417	somaticsniper,strelka	intergenic_region	MODIFIER	CR45436-mir-219	intergenic	intergenic	intergenic
B241R49	3L	28014887	C	A	CCA	C>A	CCA	C>A	0.318	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG17514	intergenic	intergenic	intergenic
B241R49	3R	5550192	G	A	CGG	G>A	CCG	C>T	0.233	varscan2,somaticsniper	synonymous_variant	LOW	mia	exon_1	mia	FBgn0014342
B241R49	3R	7049199	A	T	GAA	A>T	TTC	T>A	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Sodh-1	intergenic	intergenic	intergenic
B241R49	3R	22852321	G	A	TGT	G>A	ACA	C>T	0.2	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR43846	intergenic	intergenic	intergenic
B241R49	3R	24872965	C	A	CCT	C>A	CCT	C>A	0.324	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	CG3744	exon_5	CG3744	FBgn0039240
B241R49	3R	25649913	T	C	CTT	T>C	CTT	T>C	0.167	mutect2,varscan2,somaticsniper,strelka	synonymous_variant	LOW	jigr1	exon	jigr1	FBgn0039350
B241R49	3R	29444366	T	C	GTC	T>C	GTC	T>C	0.333	varscan2,somaticsniper	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
B241R49	3R	29839131	C	T	CCA	C>T	CCA	C>T	0.235	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Atg16	intergenic	intergenic	intergenic
B241R49	X	3909029	C	T	TCT	C>T	TCT	C>T	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CG42541	intron	CG42541	FBgn0260658
B241R49	X	4698672	G	C	AGA	G>C	TCT	C>G	0.333	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	ctp	3UTR	ctp	FBgn0011760
B241R49	X	8337198	T	C	ATT	T>C	ATT	T>C	0.5	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
B241R49	X	9870240	A	G	CAA	A>G	TTG	T>C	0.226	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG45060	intergenic	intergenic	intergenic
B241R51	2L	2091023	A	C	CAG	A>C	CTG	T>G	0.19	varscan2,somaticsniper	intron_variant	MODIFIER	dpr3	intron	dpr3	FBgn0053516
B241R51	2L	3273116	C	G	ACC	C>G	ACC	C>G	0.194	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44484	intergenic	intergenic	intergenic
B241R51	2L	6167080	T	C	CTG	T>C	CTG	T>C	0.185	varscan2,somaticsniper	intergenic_region	MODIFIER	CG13989-CG34380	intergenic	intergenic	intergenic
B241R51	2L	6167082	G	A	GGG	G>A	CCC	C>T	0.192	varscan2,somaticsniper	intergenic_region	MODIFIER	CG13989-CG34380	intergenic	intergenic	intergenic
B241R51	2L	7087623	T	C	ATA	T>C	ATA	T>C	0.533	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Pvf2	intergenic	intergenic	intergenic
B241R51	2L	15098595	G	A	GGT	G>A	ACC	C>T	0.25	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG15270	intergenic	intergenic	intergenic
B241R51	2R	883623	C	T	ACC	C>T	ACC	C>T	0.278	somaticsniper,strelka	intergenic_region	MODIFIER	CG45781-CG40498	intergenic	intergenic	intergenic
B241R51	2R	6289587	A	G	TAT	A>G	ATA	T>C	0.266	somaticsniper,strelka	intergenic_region	MODIFIER	Pld-CR46075	intergenic	intergenic	intergenic
B241R51	2R	7257037	G	A	AGT	G>A	ACT	C>T	0.264	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CR45280	intergenic	intergenic	intergenic
B241R51	2R	13342972	T	C	GTG	T>C	GTG	T>C	0.184	varscan2,somaticsniper	intron_variant	MODIFIER	CR44206	ncRNA	CR44206	FBgn0265104
B241R51	2R	14727499	G	A	AGT	G>A	ACT	C>T	0.238	somaticsniper,strelka	intergenic_region	MODIFIER	mspo-CR43428	intergenic	intergenic	intergenic
B241R51	2R	22786439	A	G	CAC	A>G	GTG	T>C	0.25	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG30270	intron	CG42260	FBgn0259145
B241R51	2R	23664082	T	A	CTA	T>A	CTA	T>A	0.3	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Pde8	intron	Pde8	FBgn0266377
B241R51	2R	24470943	T	C	TTT	T>C	TTT	T>C	0.267	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3492	intron	CG13579	FBgn0035010
B241R51	3L	1260538	G	T	AGC	G>T	GCT	C>A	0.229	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG9130	intron	tfc	FBgn0035199
B241R51	3L	3278139	G	A	TGT	G>A	ACA	C>T	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG12017	intergenic	intergenic	intergenic
B241R51	3L	3691411	T	A	CTA	T>A	CTA	T>A	0.283	freebayes	downstream_gene_variant	MODIFIER	CR43484	intergenic	intergenic	intergenic
B241R51	3L	10714282	G	C	AGA	G>C	TCT	C>G	0.227	varscan2,somaticsniper	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
B241R51	3L	11964108	C	G	GCT	C>G	GCT	C>G	0.255	somaticsniper,strelka	missense_variant	MODERATE	prc	exon_6	prc	FBgn0028573
B241R51	3L	12879297	C	T	TCA	C>T	TCA	C>T	0.185	somaticsniper,strelka	intergenic_region	MODIFIER	CG10943-CG14120	intergenic	intergenic	intergenic
B241R51	3L	18760552	G	A	AGA	G>A	TCT	C>T	0.283	freebayes	intron_variant	MODIFIER	ftz-f1	intron	ftz-f1	FBgn0001078
B241R51	3L	24657894	A	C	CAA	A>C	TTG	T>G	0.341	somaticsniper,strelka	intergenic_region	MODIFIER	CR41597-scro	intergenic	intergenic	intergenic
B241R51	3R	13670401	G	T	GGT	G>T	ACC	C>A	0.171	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	B52	intron	Task6	FBgn0038165
B241R51	3R	18096754	T	A	CTA	T>A	CTA	T>A	0.233	varscan2,somaticsniper	intron_variant	MODIFIER	sr	intron	sr	FBgn0003499
B241R51	3R	21790680	G	T	CGT	G>T	ACG	C>A	0.0789	mutect2,strelka	upstream_gene_variant	MODIFIER	CRG	intron	CASK	FBgn0013759
B241R51	3R	23502615	C	A	GCT	C>A	GCT	C>A	0.25	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG34289	intergenic	intergenic	intergenic
B241R51	3R	25400047	C	A	ACG	C>A	ACG	C>A	0.188	somaticsniper,strelka	synonymous_variant	LOW	Muc96D	exon	Muc96D	FBgn0051439
B241R51	3R	25400056	A	T	TAG	A>T	CTA	T>A	0.191	somaticsniper,strelka	synonymous_variant	LOW	Muc96D	exon	Muc96D	FBgn0051439
B241R51	3R	30927854	T	G	CTG	T>G	CTG	T>G	0.163	varscan2,somaticsniper	intron_variant	MODIFIER	Ptx1	intron	Ptx1	FBgn0020912
B241R51	X	1995974	G	A	GGA	G>A	TCC	C>T	0.405	varscan2,somaticsniper	intron_variant	MODIFIER	Hr4	intron	Hr4	FBgn0264562
B241R51	X	3909029	C	T	TCT	C>T	TCT	C>T	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CG42541	intron	CG42541	FBgn0260658
B241R51	X	8029264	A	T	CAG	A>T	CTG	T>A	0.214	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Tbh	intergenic	intergenic	intergenic
B241R51	X	13728113	A	T	CAG	A>T	CTG	T>A	0.348	varscan2,somaticsniper	synonymous_variant	LOW	g	exon	g	FBgn0001087
B241R51	X	19259072	G	A	GGC	G>A	GCC	C>T	0.0952	mutect2,strelka	synonymous_variant	LOW	rictor	exon_3	rictor	FBgn0031006
B241R51	X	21781887	A	G	TAT	A>G	ATA	T>C	0.314	somaticsniper,strelka	intron_variant	MODIFIER	flam	ncRNA	flam	FBgn0267704
B241R51	X	21781888	T	A	ATT	T>A	ATT	T>A	0.314	somaticsniper,strelka	intron_variant	MODIFIER	flam	ncRNA	flam	FBgn0267704
B241R53	2L	582243	A	G	GAG	A>G	CTC	T>C	0.333	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Pph13	intergenic	intergenic	intergenic
B241R53	2L	3748889	C	G	CCT	C>G	CCT	C>G	0.385	mutect2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG10019	intron	CG10019	FBgn0031568
B241R53	2L	4064100	C	T	TCT	C>T	TCT	C>T	0.278	somaticsniper,strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
B241R53	2L	4064106	C	T	TCT	C>T	TCT	C>T	0.278	somaticsniper,strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
B241R53	2L	6055255	C	A	GCT	C>A	GCT	C>A	0.216	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG12393	intron	CG13995	FBgn0031770
B241R53	2L	6691176	T	G	TTG	T>G	TTG	T>G	0.2	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG11327	intron	Tsp	FBgn0031850
B241R53	2L	9380276	A	T	TAA	A>T	TTA	T>A	0.273	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	Shawl	intron	Shawl	FBgn0085395
B241R53	2L	10628883	A	G	CAC	A>G	GTG	T>C	0.182	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Trim9	intergenic	intergenic	intergenic
B241R53	2L	17287321	T	C	CTG	T>C	CTG	T>C	0.206	somaticsniper,strelka	synonymous_variant	LOW	CG15140	exon	CG15140	FBgn0032631
B241R53	2R	10928425	A	G	TAT	A>G	ATA	T>C	0.208	varscan2,somaticsniper	intergenic_region	MODIFIER	Obp47a-Spn47C	intergenic	intergenic	intergenic
B241R53	2R	11734225	A	G	TAT	A>G	ATA	T>C	0.316	somaticsniper,strelka	intergenic_region	MODIFIER	pyr-ths	intergenic	intergenic	intergenic
B241R53	2R	20722273	G	T	GGG	G>T	CCC	C>A	0.35	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CR44660	intron	dpr1	FBgn0040726
B241R53	2R	23747706	G	C	GGA	G>C	TCC	C>G	0.265	somaticsniper,strelka	synonymous_variant	LOW	CG13560	exon	CG13560	FBgn0034899
B241R53	3L	2428309	T	A	ATT	T>A	ATT	T>A	0.273	freebayes	upstream_gene_variant	MODIFIER	CG45186	intron	CG45186	FBgn0266696
B241R53	3L	4948434	T	C	GTG	T>C	GTG	T>C	0.286	varscan2,somaticsniper	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
B241R53	3L	5483177	G	A	AGT	G>A	ACT	C>T	0.179	somaticsniper,strelka	synonymous_variant	LOW	CG4835	exon	CG4835	FBgn0035607
B241R53	3L	8845652	T	G	ATG	T>G	ATG	T>G	0.185	somaticsniper,strelka	intron_variant	MODIFIER	dally	ncRNA	CR45823	FBgn0267473
B241R53	3L	18756001	G	A	TGA	G>A	TCA	C>T	0.238	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45938	intron	ftz-f1	FBgn0001078
B241R53	3L	18756002	A	T	GAC	A>T	GTC	T>A	0.238	varscan2,strelka	upstream_gene_variant	MODIFIER	CR45938	intron	ftz-f1	FBgn0001078
B241R53	3R	4971279	A	T	CAA	A>T	TTG	T>A	0.25	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG1124	intergenic	intergenic	intergenic
B241R53	3R	8167712	C	T	TCA	C>T	TCA	C>T	0.273	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	grn	intron	grn	FBgn0001138
B241R53	3R	8167715	C	T	TCA	C>T	TCA	C>T	0.25	mutect2,strelka	intron_variant	MODIFIER	grn	intron	grn	FBgn0001138
B241R53	3R	12571427	G	A	TGT	G>A	ACA	C>T	0.37	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Octbeta2R	intron	Octbeta2R	FBgn0038063
B241R53	3R	18468070	T	C	GTT	T>C	GTT	T>C	0.227	mutect2,somaticsniper	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
B241R53	3R	19816799	C	A	CCT	C>A	CCT	C>A	0.375	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	bnl	intron	bnl	FBgn0014135
B241R53	3R	22069875	A	T	AAT	A>T	ATT	T>A	0.238	somaticsniper,strelka	intron_variant	MODIFIER	how	intron	how	FBgn0264491
B241R53	3R	23198088	G	A	TGG	G>A	CCA	C>T	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
B241R53	3R	23198089	G	A	GGA	G>A	TCC	C>T	0.4	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
B241R53	3R	23396304	A	G	TAG	A>G	CTA	T>C	0.222	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR44323	intergenic	intergenic	intergenic
B241R53	3R	23763750	C	A	TCT	C>A	TCT	C>A	0.5	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG10219	intergenic	intergenic	intergenic
B241R53	3R	31144935	G	T	TGA	G>T	TCA	C>A	0.25	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
B241R53	3R	31370047	T	C	ATA	T>C	ATA	T>C	0.162	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	gskt	intron	CG34347	FBgn0085376
B241R53	X	11601016	C	T	GCG	C>T	GCG	C>T	0.85	mutect2,varscan2,somaticsniper,strelka,freebayes	downstream_gene_variant	MODIFIER	CR43212	intron	rho-4	FBgn0030318
B241R53	X	20889492	C	T	ACG	C>T	ACG	C>T	0.8	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	shakB	intron	shakB	FBgn0085387
B241R55	2L	1615465	C	A	ACA	C>A	ACA	C>A	0.294	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31935	intergenic	intergenic	intergenic
B241R55	2L	2828980	T	C	ATA	T>C	ATA	T>C	0.324	mutect2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG3123	intron	Duox	FBgn0283531
B241R55	2L	4647640	C	A	TCC	C>A	TCC	C>A	0.312	freebayes	missense_variant	MODERATE	CG43798	exon	CG43798	FBgn0264342
B241R55	2L	7132797	G	A	CGT	G>A	ACG	C>T	0.222	varscan2,somaticsniper	missense_variant	MODERATE	Pvf3	exon_1	Pvf3	FBgn0085407
B241R55	2L	8327571	C	A	TCA	C>A	TCA	C>A	0.312	freebayes	5_prime_UTR_variant	MODIFIER	CG14275	exon_1	CG14275	FBgn0032022
B241R55	2L	9836325	C	A	ACA	C>A	ACA	C>A	0.261	somaticsniper,strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
B241R55	2L	12386894	G	A	TGT	G>A	ACA	C>T	0.173	mutect2,somaticsniper	intron_variant	MODIFIER	bru-2	intron	bru2	FBgn0262475
B241R55	2L	12409191	G	A	TGT	G>A	ACA	C>T	0.462	somaticsniper,strelka	upstream_gene_variant	MODIFIER	vir-1	intron	vir-1	FBgn0043841
B241R55	2L	17287321	T	C	CTG	T>C	CTG	T>C	0.171	varscan2,somaticsniper	synonymous_variant	LOW	CG15140	exon	CG15140	FBgn0032631
B241R55	2L	19642515	A	G	AAT	A>G	ATT	T>C	0.318	varscan2,somaticsniper	intron_variant	MODIFIER	Lar	ncRNA	CR44979	FBgn0266314
B241R55	2L	22200551	C	T	TCT	C>T	TCT	C>T	0.24	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ir40a	intron	Ir40a	FBgn0259683
B241R55	2R	1522418	G	T	CGT	G>T	ACG	C>A	0.133	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Maf1	intron	Maf1	FBgn0267861
B241R55	2R	5301776	A	T	TAC	A>T	GTA	T>A	0.194	somaticsniper,strelka	intergenic_region	MODIFIER	d4-sxc	intergenic	intergenic	intergenic
B241R55	2R	5301777	C	A	ACC	C>A	ACC	C>A	0.194	somaticsniper,strelka	intergenic_region	MODIFIER	d4-sxc	intergenic	intergenic	intergenic
B241R55	2R	8012648	C	T	CCT	C>T	CCT	C>T	0.305	mutect2,varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	CG14762	exon_2	CG14762	FBgn0033250
B241R55	2R	14319638	T	C	TTG	T>C	TTG	T>C	0.385	somaticsniper,strelka	intron_variant	MODIFIER	Shroom	intron	Shroom	FBgn0085408
B241R55	2R	15001459	A	C	CAA	A>C	TTG	T>G	0.333	varscan2,somaticsniper	intergenic_region	MODIFIER	CR43830-hbs	intergenic	intergenic	intergenic
B241R55	2R	16577699	T	A	TTA	T>A	TTA	T>A	0.357	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG8317	intergenic	intergenic	intergenic
B241R55	2R	16577707	G	A	AGA	G>A	TCT	C>T	0.345	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG8317	intergenic	intergenic	intergenic
B241R55	2R	19990567	C	G	ACT	C>G	ACT	C>G	0.171	varscan2,somaticsniper	intergenic_region	MODIFIER	CG8654-tRNA:CR30212	intergenic	intergenic	intergenic
B241R55	2R	22648550	A	C	TAA	A>C	TTA	T>G	0.273	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ugt58Fa	intergenic	intergenic	intergenic
B241R55	2R	23643866	G	A	CGG	G>A	CCG	C>T	0.162	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45153	intron	retn	FBgn0004795
B241R55	3L	681823	C	G	ACC	C>G	ACC	C>G	0.308	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG17129	intron	CG3386	FBgn0035152
B241R55	3L	1409681	T	C	ATG	T>C	ATG	T>C	0.286	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9168	intron	Ptp61F	FBgn0267487
B241R55	3L	1658068	G	T	TGG	G>T	CCA	C>A	0.191	somaticsniper,strelka	synonymous_variant	LOW	CG7971	exon_8	CG7971	FBgn0035253
B241R55	3L	3641973	C	G	ACT	C>G	ACT	C>G	0.19	varscan2,somaticsniper	intron_variant	MODIFIER	dar1	intron	dar1	FBgn0263239
B241R55	3L	5509669	T	C	TTT	T>C	TTT	T>C	0.184	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Lkr	intron	CG34342	FBgn0085371
B241R55	3L	5572224	A	G	AAC	A>G	GTT	T>C	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	snmRNA:357	intron	Msr-110	FBgn0015766
B241R55	3L	6276318	C	A	ACC	C>A	ACC	C>A	0.25	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	CG43168	3UTR	CG43168	FBgn0262787
B241R55	3L	6276327	A	C	AAC	A>C	GTT	T>G	0.195	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	CG43168	3UTR	CG43168	FBgn0262787
B241R55	3L	8716319	G	T	TGG	G>T	CCA	C>A	0.24	somaticsniper,strelka	downstream_gene_variant	MODIFIER	SrpRbeta	intergenic	intergenic	intergenic
B241R55	3L	9602765	G	A	GGC	G>A	GCC	C>T	0.0577	mutect2,strelka	upstream_gene_variant	MODIFIER	CG3088	intron	CG46121	FBgn0267796
B241R55	3L	11477725	T	A	ATT	T>A	ATT	T>A	0.227	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR46049	intergenic	intergenic	intergenic
B241R55	3L	11555669	C	A	TCA	C>A	TCA	C>A	0.391	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	Mob2	intron	Mob2	FBgn0259481
B241R55	3L	17163990	G	A	TGA	G>A	TCA	C>T	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43433	intron	Rbp6	FBgn0260943
B241R55	3L	17470333	T	A	GTG	T>A	GTG	T>A	0.263	varscan2,somaticsniper	5_prime_UTR_variant	MODIFIER	CG7589	5UTR	CG7589	FBgn0036727
B241R55	3R	7195761	A	G	AAC	A>G	GTT	T>C	0.209	varscan2,somaticsniper	synonymous_variant	LOW	lap	exon_12	lap	FBgn0086372
B241R55	3R	9818655	T	A	TTA	T>A	TTA	T>A	0.267	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44035	intergenic	intergenic	intergenic
B241R55	3R	9818660	T	C	GTA	T>C	GTA	T>C	0.36	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44035	intergenic	intergenic	intergenic
B241R55	3R	10181887	G	A	TGC	G>A	GCA	C>T	0.194	varscan2,somaticsniper,strelka	intron_variant	MODIFIER	CG12814	intron	CG12814	FBgn0037796
B241R55	3R	17942368	C	T	TCA	C>T	TCA	C>T	0.409	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	cpo	intron	cpo	FBgn0263995
B241R55	3R	20977761	C	G	GCA	C>G	GCA	C>G	0.294	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Calx	intergenic	intergenic	intergenic
B241R55	3R	22567794	A	T	AAC	A>T	GTT	T>A	0.24	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33110	intergenic	intergenic	intergenic
B241R55	3R	22567795	C	T	ACG	C>T	ACG	C>T	0.24	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33110	intergenic	intergenic	intergenic
B241R55	3R	22594720	T	C	ATA	T>C	ATA	T>C	0.176	varscan2,somaticsniper	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
B241R55	3R	23182601	G	A	TGG	G>A	CCA	C>T	0.28	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Irk1	intron	Irk1	FBgn0265042
B241R55	3R	23182602	G	A	GGG	G>A	CCC	C>T	0.28	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Irk1	intron	Irk1	FBgn0265042
B241R55	3R	24596728	G	A	TGT	G>A	ACA	C>T	0.222	somaticsniper,strelka	intron_variant	MODIFIER	mld	intron	mld	FBgn0263490
B241R55	3R	24596734	G	C	TGT	G>C	ACA	C>G	0.276	somaticsniper,strelka	intron_variant	MODIFIER	mld	intron	mld	FBgn0263490
B241R55	3R	25528088	T	C	CTA	T>C	CTA	T>C	0.217	somaticsniper,strelka	intron_variant	MODIFIER	msi	intron	msi	FBgn0011666
B241R55	3R	28842160	T	G	TTT	T>G	TTT	T>G	0.185	somaticsniper,strelka	upstream_gene_variant	MODIFIER	spg	intron	Apc	FBgn0015589
B241R55	3R	29551790	A	G	AAC	A>G	GTT	T>C	0.261	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Dr	intergenic	intergenic	intergenic
B241R55	3R	29551793	C	G	CCA	C>G	CCA	C>G	0.24	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Dr	intergenic	intergenic	intergenic
B241R55	3R	31152358	C	A	TCT	C>A	TCT	C>A	0.192	somaticsniper,strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
B241R55	3R	32010039	A	C	AAC	A>C	GTT	T>G	0.462	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45556	intron	heph	FBgn0011224
B241R57	2L	3056529	G	A	AGA	G>A	TCT	C>T	0.238	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3523	intergenic	intergenic	intergenic
B241R57	2L	4865534	A	G	AAC	A>G	GTT	T>C	0.3	varscan2,somaticsniper	missense_variant	MODERATE	pog	exon_3	smog	FBgn0051660
B241R57	2L	4865539	A	T	CAG	A>T	CTG	T>A	0.286	varscan2,somaticsniper	synonymous_variant	LOW	pog	exon_3	smog	FBgn0051660
B241R57	2L	6697142	C	A	ACA	C>A	ACA	C>A	0.238	somaticsniper,strelka	intron_variant	MODIFIER	Tsp	intron	Tsp	FBgn0031850
B241R57	2L	13601567	T	G	TTC	T>G	TTC	T>G	0.182	mutect2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9254	intron	kuz	FBgn0259984
B241R57	2L	15759030	G	C	TGT	G>C	ACA	C>G	0.286	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	Gli	exon_5	Gli	FBgn0001987
B241R57	2L	19042233	T	C	ATC	T>C	ATC	T>C	0.281	varscan2,somaticsniper,strelka	synonymous_variant	LOW	Catsup	exon_1	Catsup	FBgn0002022
B241R57	2L	19042236	T	C	ATC	T>C	ATC	T>C	0.273	varscan2,somaticsniper,strelka	synonymous_variant	LOW	Catsup	exon_1	Catsup	FBgn0002022
B241R57	2L	19080053	G	T	TGC	G>T	GCA	C>A	0.25	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	Lim3	3UTR	Lim3	FBgn0002023
B241R57	2L	19080057	C	T	GCT	C>T	GCT	C>T	0.188	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	Lim3	3UTR	Lim3	FBgn0002023
B241R57	2L	19272486	G	A	AGA	G>A	TCT	C>T	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CR44190	ncRNA	CR44190	FBgn0265079
B241R57	2R	7911233	A	G	TAT	A>G	ATA	T>C	0.292	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG12159	intron	CG30377	FBgn0050377
B241R57	2R	16981497	T	C	CTC	T>C	CTC	T>C	0.381	somaticsniper,strelka	intron_variant	MODIFIER	Cbp53E	intron	Cbp53E	FBgn0004580
B241R57	2R	19153878	A	C	AAC	A>C	GTT	T>G	0.364	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ena	intron	ena	FBgn0000578
B241R57	2R	22002769	A	G	AAA	A>G	TTT	T>C	0.258	somaticsniper,strelka	intron_variant	MODIFIER	CG34370	intron	CG34370	FBgn0085399
B241R57	2R	22293239	T	G	TTC	T>G	TTC	T>G	0.273	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG5819	intergenic	intergenic	intergenic
B241R57	3L	729950	G	T	TGC	G>T	GCA	C>A	0.24	somaticsniper,strelka	intergenic_region	MODIFIER	CR45411-CR43785	intergenic	intergenic	intergenic
B241R57	3L	1684879	A	G	GAT	A>G	ATC	T>C	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG7991	intron	CG7991	FBgn0035260
B241R57	3L	2426399	T	C	TTA	T>C	TTA	T>C	0.25	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG45186	intron	CG45186	FBgn0266696
B241R57	3L	3831978	G	A	AGC	G>A	GCT	C>T	0.185	varscan2,somaticsniper	synonymous_variant	LOW	enc	exon_3	enc	FBgn0004875
B241R57	3L	4311526	T	C	ATT	T>C	ATT	T>C	0.333	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	dyl	intergenic	intergenic	intergenic
B241R57	3L	5572224	A	G	AAC	A>G	GTT	T>C	0.286	somaticsniper,strelka	upstream_gene_variant	MODIFIER	snmRNA:357	intron	Msr-110	FBgn0015766
B241R57	3L	7997648	T	C	CTT	T>C	CTT	T>C	0.258	somaticsniper,strelka	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
B241R57	3L	10631008	A	G	GAT	A>G	ATC	T>C	0.222	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14151	intergenic	intergenic	intergenic
B241R57	3L	12240081	A	T	TAG	A>T	CTA	T>A	0.304	somaticsniper,strelka	intron_variant	MODIFIER	app	intron	app	FBgn0260941
B241R57	3L	12240093	G	A	TGC	G>A	GCA	C>T	0.346	somaticsniper,strelka	intron_variant	MODIFIER	app	intron	app	FBgn0260941
B241R57	3L	12249655	T	C	GTC	T>C	GTC	T>C	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43991	intron	app	FBgn0260941
B241R57	3L	17156789	T	C	TTC	T>C	TTC	T>C	0.0789	mutect2,strelka	intron_variant	MODIFIER	Rbp6	intron	Rbp6	FBgn0260943
B241R57	3L	18161907	G	T	CGC	G>T	GCG	C>A	0.375	somaticsniper,strelka	intron_variant	MODIFIER	CG13699	intron	CG13699	FBgn0036781
B241R57	3L	18161908	C	T	GCA	C>T	GCA	C>T	0.346	somaticsniper,strelka	intron_variant	MODIFIER	CG13699	intron	CG13699	FBgn0036781
B241R57	3R	2835848	C	T	TCT	C>T	TCT	C>T	0.172	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
B241R57	3R	2835849	T	A	CTA	T>A	CTA	T>A	0.172	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
B241R57	3R	10491217	T	C	ATA	T>C	ATA	T>C	0.185	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45576	intergenic	intergenic	intergenic
B241R57	3R	18462202	T	C	TTT	T>C	TTT	T>C	0.138	mutect2,strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
B241R57	3R	18575676	T	C	TTC	T>C	TTC	T>C	0.179	varscan2,somaticsniper	intron_variant	MODIFIER	CG7694	intron	fray	FBgn0023083
B241R57	3R	20453520	A	C	AAT	A>C	ATT	T>G	0.192	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
B241R57	3R	27858887	C	A	ACA	C>A	ACA	C>A	0.263	somaticsniper,strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
B241R57	3R	28357502	G	A	CGA	G>A	TCG	C>T	0.2	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Or98b	intergenic	intergenic	intergenic
B241R57	3R	30055642	C	T	ACC	C>T	ACC	C>T	0.31	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	spn-A	exon	spn-A	FBgn0003479
B241R57	3R	30795290	T	G	TTA	T>G	TTA	T>G	0.333	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	mir-1013	intron	wts	FBgn0011739
B241R57	X	10153827	G	T	TGC	G>T	GCA	C>A	0.167	mutect2,varscan2,strelka	missense_variant	MODERATE	CG12645	exon_1	CG12645	FBgn0030181
B241R57	X	14469766	A	G	AAG	A>G	CTT	T>C	0.227	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG9411	intergenic	intergenic	intergenic
B241R59	2L	7152845	C	T	TCT	C>T	TCT	C>T	0.238	somaticsniper,strelka	intron_variant	MODIFIER	Pvf3	intron	Pvf3	FBgn0085407
B241R59	2L	8851968	T	G	TTT	T>G	TTT	T>G	0.444	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45365	intergenic	intergenic	intergenic
B241R59	2L	10679187	A	G	AAG	A>G	CTT	T>C	0.286	somaticsniper,strelka	synonymous_variant	LOW	CG17104	exon	CG17104	FBgn0040496
B241R59	2L	12647551	C	G	TCA	C>G	TCA	C>G	0.269	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Ref2	intergenic	intergenic	intergenic
B241R59	2R	11073024	A	C	TAT	A>C	ATA	T>G	0.31	varscan2,somaticsniper	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R59	2R	11099000	T	C	ATA	T>C	ATA	T>C	0.227	varscan2,somaticsniper	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R59	2R	13909529	C	A	ACA	C>A	ACA	C>A	0.261	varscan2,somaticsniper	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
B241R59	2R	15230721	A	C	GAT	A>C	ATC	T>G	0.364	somaticsniper,strelka	intron_variant	MODIFIER	Fs	exon_5	CR44370	FBgn0265508
B241R59	2R	15909351	A	C	AAC	A>C	GTT	T>G	0.222	somaticsniper,strelka	intron_variant	MODIFIER	sli	intron	sli	FBgn0264089
B241R59	2R	16037270	G	T	TGC	G>T	GCA	C>A	0.368	varscan2,somaticsniper	intron_variant	MODIFIER	SP2353	intron	SP2353	FBgn0034070
B241R59	2R	17882447	T	A	TTA	T>A	TTA	T>A	0.273	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG30325	intron	Elk	FBgn0011589
B241R59	2R	20112951	T	A	CTG	T>A	CTG	T>A	0.526	mutect2,varscan2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	18w	exon	18w	FBgn0004364
B241R59	2R	20573433	A	T	GAG	A>T	CTC	T>A	0.286	varscan2,somaticsniper	intron_variant	MODIFIER	qsm	intron	qsm	FBgn0028622
B241R59	2R	21458026	C	T	ACG	C>T	ACG	C>T	0.231	varscan2,somaticsniper	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
B241R59	2R	23827542	T	A	CTC	T>A	CTC	T>A	0.545	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG4763	intron	CG5549	FBgn0034911
B241R59	3L	2748023	G	T	TGG	G>T	CCA	C>A	0.353	varscan2,somaticsniper	intron_variant	MODIFIER	Mrtf	intron	Mrtf	FBgn0052296
B241R59	3L	7647417	C	G	GCC	C>G	GCC	C>G	0.536	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	CG32373	intergenic	intergenic	intergenic
B241R59	3L	13090422	C	T	TCG	C>T	TCG	C>T	0.273	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG17300	intergenic	intergenic	intergenic
B241R59	3L	16162679	A	T	AAT	A>T	ATT	T>A	0.308	somaticsniper,strelka	intron_variant	MODIFIER	CG5151	intron	CG5151	FBgn0036576
B241R59	3R	973276	A	T	AAA	A>T	TTT	T>A	0.429	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
B241R59	3R	14285559	G	A	CGA	G>A	TCG	C>T	0.273	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45596	intron	trx	FBgn0003862
B241R59	3R	15600095	T	G	TTG	T>G	TTG	T>G	0.286	mutect2,somaticsniper,strelka	intergenic_region	MODIFIER	AOX4-CG43335	intergenic	intergenic	intergenic
B241R59	3R	16990262	T	C	ATG	T>C	ATG	T>C	0.25	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	MESK4	3UTR	MESK4	FBgn0043069
B241R59	3R	18173983	T	A	CTG	T>A	CTG	T>A	0.182	varscan2,somaticsniper	synonymous_variant	LOW	PP2A-B'	exon_2	PP2A-B'	FBgn0042693
B241R59	3R	19148409	G	T	TGA	G>T	TCA	C>A	0.538	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ppcs	intergenic	intergenic	intergenic
B241R59	3R	19732966	A	T	CAG	A>T	CTG	T>A	0.219	varscan2,somaticsniper	intron_variant	MODIFIER	GluClalpha	intron	GluClalpha	FBgn0024963
B241R59	Y	2841717	T	A	CTT	T>A	CTT	T>A	0.304	somaticsniper,strelka	intergenic_region	MODIFIER	Su(Ste):CR42424-fdy	intergenic	intergenic	intergenic
B241R59	Y	2841718	T	C	TTT	T>C	TTT	T>C	0.304	somaticsniper,strelka	intergenic_region	MODIFIER	Su(Ste):CR42424-fdy	intergenic	intergenic	intergenic
B241R61	2L	2731607	C	A	TCA	C>A	TCA	C>A	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31689	intron	CG31689	FBgn0031449
B241R61	2L	2731608	A	T	CAT	A>T	ATG	T>A	0.268	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG31689	intron	CG31689	FBgn0031449
B241R61	2L	4705241	G	A	AGG	G>A	CCT	C>T	0.278	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Taf12L	intron	CG34351	FBgn0085380
B241R61	2L	6740777	T	G	TTT	T>G	TTT	T>G	0.333	somaticsniper,strelka	upstream_gene_variant	MODIFIER	TTLL3A	intergenic	intergenic	intergenic
B241R61	2L	7565765	T	G	TTA	T>G	TTA	T>G	0.217	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR46063	intron	RapGAP1	FBgn0264895
B241R61	2L	23038946	A	T	TAC	A>T	GTA	T>A	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	Cht3-Spf45	intergenic	intergenic	intergenic
B241R61	2R	13468708	T	G	GTT	T>G	GTT	T>G	0.194	varscan2,somaticsniper	intron_variant	MODIFIER	arr	intron	arr	FBgn0000119
B241R61	2R	14490567	A	C	CAA	A>C	TTG	T>G	0.212	varscan2,somaticsniper	intron_variant	MODIFIER	L	intron	PRAS40	FBgn0267824
B241R61	2R	15005993	T	G	GTG	T>G	GTG	T>G	0.327	varscan2,somaticsniper	intergenic_region	MODIFIER	CR43830-hbs	intergenic	intergenic	intergenic
B241R61	2R	19822747	G	T	GGG	G>T	CCC	C>A	0.195	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Toll-7	intergenic	intergenic	intergenic
B241R61	2R	21235451	C	G	ACT	C>G	ACT	C>G	0.184	somaticsniper,strelka	intron_variant	MODIFIER	ASPP	intron	ASPP	FBgn0034606
B241R61	2R	22213843	G	A	CGA	G>A	TCG	C>T	0.282	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3264	intron	ari-2	FBgn0025186
B241R61	2R	23421448	G	A	TGT	G>A	ACA	C>T	0.24	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9812	intergenic	intergenic	intergenic
B241R61	3L	2380022	A	G	AAT	A>G	ATT	T>C	0.171	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG15877	intron	CG45186	FBgn0266696
B241R61	3L	4383382	G	A	TGG	G>A	CCA	C>T	0.217	somaticsniper,strelka	upstream_gene_variant	MODIFIER	DopEcR	intergenic	intergenic	intergenic
B241R61	3L	4617082	G	T	TGT	G>T	ACA	C>A	0.226	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG32246	intron	Src64B	FBgn0262733
B241R61	3L	4617083	T	G	GTC	T>G	GTC	T>G	0.226	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG32246	intron	Src64B	FBgn0262733
B241R61	3L	6835945	C	T	ACA	C>T	ACA	C>T	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
B241R61	3L	6835946	A	C	CAC	A>C	GTG	T>G	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
B241R61	3L	12656053	G	A	GGC	G>A	GCC	C>T	0.143	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR43431	intergenic	intergenic	intergenic
B241R61	3L	13614181	C	T	GCC	C>T	GCC	C>T	0.326	varscan2,somaticsniper	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
B241R61	3R	7074668	T	C	ATT	T>C	ATT	T>C	0.188	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG1104	intergenic	intergenic	intergenic
B241R61	3R	14688231	G	A	TGC	G>A	GCA	C>T	0.16	somaticsniper,strelka	intron_variant	MODIFIER	Meltrin	intron	Meltrin	FBgn0265140
B241R61	3R	16369373	T	C	GTT	T>C	GTT	T>C	0.32	somaticsniper,strelka	splice_region_variant	LOW	CG10317	3UTR	CG10317	FBgn0038423
B241R61	3R	19506783	G	T	GGA	G>T	TCC	C>A	0.246	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
B241R61	3R	22891810	A	G	CAT	A>G	ATG	T>C	0.412	varscan2,somaticsniper	intergenic_region	MODIFIER	CR43846-klg	intergenic	intergenic	intergenic
B241R61	3R	23083810	T	C	TTC	T>C	TTC	T>C	0.207	somaticsniper,strelka	intron_variant	MODIFIER	CG13830	intron	Cow	FBgn0039054
B241R61	3R	23499085	A	G	CAA	A>G	TTG	T>C	0.167	varscan2,somaticsniper	intergenic_region	MODIFIER	Ir94h-CG34289	intergenic	intergenic	intergenic
B241R61	3R	25190186	G	C	GGA	G>C	TCC	C>G	0.22	varscan2,somaticsniper	missense_variant	MODERATE	dan	exon	dan	FBgn0039286
B241R61	3R	26981652	A	T	AAA	A>T	TTT	T>A	0.133	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG14253	5UTR	CG14253	FBgn0039467
B241R61	3R	27840704	A	G	CAC	A>G	GTG	T>C	0.25	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Or98P	intron	CG34353	FBgn0085382
B241R61	3R	27840707	C	G	CCC	C>G	CCC	C>G	0.205	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Or98P	intron	CG34353	FBgn0085382
B241R61	3R	29181533	C	G	GCT	C>G	GCT	C>G	0.154	varscan2,somaticsniper	missense_variant	MODERATE	CG14509	exon_2	CG14509	FBgn0039647
B241R61	3R	29551790	A	G	AAC	A>G	GTT	T>C	0.188	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	Dr	intergenic	intergenic	intergenic
B241R61	3R	29880337	C	T	TCG	C>T	TCG	C>T	0.229	varscan2,somaticsniper	intron_variant	MODIFIER	CG31038	intron	CG31038	FBgn0051038
B241R61	3R	30095376	C	G	TCC	C>G	TCC	C>G	0.195	somaticsniper,strelka	upstream_gene_variant	MODIFIER	sima	intron	sima	FBgn0266411
B241R61	3R	31428325	C	A	CCC	C>A	CCC	C>A	0.286	somaticsniper,strelka	intron_variant	MODIFIER	Gprk2	intron	Gprk2	FBgn0261988
B241R61	X	4171169	T	C	TTC	T>C	TTC	T>C	0.219	varscan2,somaticsniper	intron_variant	MODIFIER	Fas2	intron	Fas2	FBgn0000635
B241R61	Y	1975666	A	G	TAA	A>G	TTA	T>C	0.312	somaticsniper,strelka	intergenic_region	MODIFIER	Ppr-Y-CR45931	intergenic	intergenic	intergenic
B241R63	2L	4940854	A	G	GAC	A>G	GTC	T>C	0.305	somaticsniper,strelka	missense_variant	MODERATE	Sgs1	exon	Sgs1	FBgn0003372
B241R63	2L	8993217	A	C	GAT	A>C	ATC	T>G	0.167	somaticsniper,strelka	missense_variant	MODERATE	CG9555	exon	CG9555	FBgn0032085
B241R63	2L	10423107	G	A	TGA	G>A	TCA	C>T	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	pie	intergenic	intergenic	intergenic
B241R63	2L	10423108	A	C	GAG	A>C	CTC	T>G	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	pie	intergenic	intergenic	intergenic
B241R63	2L	13322157	T	C	CTC	T>C	CTC	T>C	0.242	somaticsniper,strelka	intron_variant	MODIFIER	CG43778	intron	CG43778	FBgn0264308
B241R63	2L	13587482	A	G	TAC	A>G	GTA	T>C	0.167	mutect2,varscan2,strelka	downstream_gene_variant	MODIFIER	CR44973	intron	kuz	FBgn0259984
B241R63	2L	13998265	C	T	TCA	C>T	TCA	C>T	0.2	varscan2,somaticsniper	intron_variant	MODIFIER	rk	intron	rk	FBgn0003255
B241R63	2L	15068806	G	T	GGG	G>T	CCC	C>A	0.192	varscan2,strelka	synonymous_variant	LOW	vas	intron	vig	FBgn0024183
B241R63	2L	18337680	A	T	CAG	A>T	CTG	T>A	0.286	varscan2,somaticsniper	intron_variant	MODIFIER	Fas3	intron	Fas3	FBgn0000636
B241R63	2L	19883516	G	C	AGC	G>C	GCT	C>G	0.182	varscan2,somaticsniper	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
B241R63	2L	22730614	T	A	TTA	T>A	TTA	T>A	0.359	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
B241R63	2R	4934517	T	A	ATT	T>A	ATT	T>A	0.333	somaticsniper,strelka	intron_variant	MODIFIER	Ir41a	intron	Ir41a	FBgn0040849
B241R63	2R	4934518	T	A	TTG	T>A	TTG	T>A	0.333	somaticsniper,strelka	intron_variant	MODIFIER	Ir41a	intron	Ir41a	FBgn0040849
B241R63	2R	5020334	G	A	GGG	G>A	CCC	C>T	0.425	mutect2,varscan2,somaticsniper,strelka,freebayes	stop_gained	HIGH	Ir41a	exon_6	Ir41a	FBgn0040849
B241R63	2R	7945458	A	C	TAT	A>C	ATA	T>G	0.12	varscan2,strelka	synonymous_variant	LOW	CG34431	exon	CG34431	FBgn0085460
B241R63	2R	10413065	T	A	ATT	T>A	ATT	T>A	0.355	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43177	intron	CG42732	FBgn0261698
B241R63	2R	10583584	A	C	AAC	A>C	GTT	T>G	0.267	somaticsniper,strelka	upstream_gene_variant	MODIFIER	psq	intron	psq	FBgn0263102
B241R63	2R	13552930	C	G	TCT	C>G	TCT	C>G	0.32	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33156	intron	CG33156	FBgn0053156
B241R63	2R	13552931	T	A	CTA	T>A	CTA	T>A	0.292	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG33156	intron	CG33156	FBgn0053156
B241R63	2R	15353520	T	G	ATC	T>G	ATC	T>G	0.25	varscan2,somaticsniper	intron_variant	MODIFIER	unc-5	intron	unc-5	FBgn0034013
B241R63	2R	16453106	A	G	GAT	A>G	ATC	T>C	0.185	varscan2,somaticsniper	intergenic_region	MODIFIER	CG15925-CheB53a	intergenic	intergenic	intergenic
B241R63	2R	23504437	A	G	TAA	A>G	TTA	T>C	0.281	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG13558	intergenic	intergenic	intergenic
B241R63	2R	23827940	T	C	TTC	T>C	TTC	T>C	0.214	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG4763	intron	CG5549	FBgn0034911
B241R63	3L	5285849	G	A	AGC	G>A	GCT	C>T	0.208	varscan2,somaticsniper	intergenic_region	MODIFIER	shep-CR45741	intergenic	intergenic	intergenic
B241R63	3L	5572199	A	G	CAG	A>G	CTG	T>C	0.222	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	snmRNA:357	intron	Msr-110	FBgn0015766
B241R63	3L	5689244	A	G	TAC	A>G	GTA	T>C	0.31	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	sif	intron	sif	FBgn0085447
B241R63	3L	7790118	G	A	GGT	G>A	ACC	C>T	0.261	varscan2,somaticsniper	intron_variant	MODIFIER	CG32369	intron	CG32369	FBgn0052369
B241R63	3L	8376038	T	C	GTT	T>C	GTT	T>C	0.346	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	ImpE1	intron	ImpE1	FBgn0001253
B241R63	3L	11199227	T	C	TTA	T>C	TTA	T>C	0.179	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	GlcAT-P	intron	Plod	FBgn0036147
B241R63	3L	11642733	A	G	AAA	A>G	TTT	T>C	0.364	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG32091	3UTR	CG32091	FBgn0052091
B241R63	3L	18433287	C	T	ACC	C>T	ACC	C>T	0.294	varscan2,somaticsniper	intergenic_region	MODIFIER	rpr-skl	intergenic	intergenic	intergenic
B241R63	3R	2835848	C	T	TCT	C>T	TCT	C>T	0.346	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
B241R63	3R	2835849	T	A	CTA	T>A	CTA	T>A	0.346	somaticsniper,strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
B241R63	3R	13539016	C	G	TCA	C>G	TCA	C>G	0.308	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG31337	intergenic	intergenic	intergenic
B241R63	3R	14427299	A	G	CAA	A>G	TTG	T>C	0.207	varscan2,somaticsniper	missense_variant	MODERATE	cv-c	exon_4	cv-c	FBgn0086901
B241R63	3R	14823322	T	G	ATC	T>G	ATC	T>G	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	btsz	intron	btsz	FBgn0266756
B241R63	3R	20461134	G	A	CGA	G>A	TCG	C>T	0.226	varscan2,somaticsniper	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
B241R63	3R	21328797	A	G	GAC	A>G	GTC	T>C	0.381	varscan2,somaticsniper	intron_variant	MODIFIER	CG16791	intron	CG16791	FBgn0038881
B241R63	3R	25182533	C	A	TCG	C>A	TCG	C>A	0.286	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	dan	intron	lobo	FBgn0083946
B241R63	3R	27453331	T	C	GTT	T>C	GTT	T>C	0.143	varscan2,somaticsniper	intergenic_region	MODIFIER	CG44290-CG13978	intergenic	intergenic	intergenic
B241R63	3R	28468401	G	C	AGG	G>C	CCT	C>G	0.304	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	beat-VI	intron	beat-VI	FBgn0039584
B241R63	X	9129256	G	A	CGA	G>A	TCG	C>T	0.231	varscan2,somaticsniper	intron_variant	MODIFIER	fend	intron	fend	FBgn0030090
D197R01	2L	3629796	G	T	TGG	G>T	CCA	C>A	0.194	somaticsniper,strelka	intron_variant	MODIFIER	for	intron	for	FBgn0000721
D197R01	2L	8231248	T	G	TTA	T>G	TTA	T>G	0.164	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Pvr	intron	Pvr	FBgn0032006
D197R01	2L	10262630	C	T	TCT	C>T	TCT	C>T	0.156	varscan2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Rsf1	3UTR	Rsf1	FBgn0011305
D197R01	2L	10464537	G	T	TGG	G>T	CCA	C>A	0.226	varscan2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	RluA-1	exon_9	RluA-1	FBgn0051719
D197R01	2L	11697964	C	A	ACC	C>A	ACC	C>A	0.161	mutect2,varscan2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG4988	intergenic	intergenic	intergenic
D197R01	2L	17268561	G	C	AGG	G>C	CCT	C>G	0.145	somaticsniper,strelka	intergenic_region	MODIFIER	beat-IIIc-CR45729	intergenic	intergenic	intergenic
D197R01	2L	19745327	G	A	TGT	G>A	ACA	C>T	0.213	mutect2,varscan2,somaticsniper,strelka	synonymous_variant	LOW	CG10631	exon_7	CG10631	FBgn0032817
D197R01	2R	2666073	T	A	ATT	T>A	ATT	T>A	0.276	somaticsniper,strelka	intergenic_region	MODIFIER	MFS17-CG41378	intergenic	intergenic	intergenic
D197R01	2R	4027857	T	G	CTA	T>G	CTA	T>G	0.205	somaticsniper,strelka	intron_variant	MODIFIER	Haspin	intron	Haspin	FBgn0046706
D197R01	2R	4973956	C	T	ACG	C>T	ACG	C>T	0.0649	mutect2,strelka	intron_variant	MODIFIER	Ir41a	intron	Ir41a	FBgn0040849
D197R01	2R	10353818	G	C	AGA	G>C	TCT	C>G	0.193	somaticsniper,strelka	missense_variant	MODERATE	CG12907	exon	CG46298	FBgn0283625
D197R01	2R	10682960	T	A	GTT	T>A	GTT	T>A	0.162	varscan2,somaticsniper	intron_variant	MODIFIER	stan	intron	stan	FBgn0024836
D197R01	2R	12698452	A	G	AAC	A>G	GTT	T>C	0.169	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	wuc	intergenic	intergenic	intergenic
D197R01	2R	13553807	T	A	GTG	T>A	GTG	T>A	0.0577	mutect2,strelka	upstream_gene_variant	MODIFIER	CG33156	intergenic	intergenic	intergenic
D197R01	2R	16035961	A	C	AAC	A>C	GTT	T>G	0.133	varscan2,strelka	intron_variant	MODIFIER	SP2353	intron	SP2353	FBgn0034070
D197R01	2R	20757281	A	G	TAG	A>G	CTA	T>C	0.267	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG34202	intergenic	intergenic	intergenic
D197R01	2R	21703848	T	C	CTA	T>C	CTA	T>C	0.333	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	HmgZ	intron	HmgD	FBgn0004362
D197R01	3L	1140309	A	G	GAA	A>G	TTC	T>C	0.162	somaticsniper,strelka	downstream_gene_variant	MODIFIER	bab2	intergenic	intergenic	intergenic
D197R01	3L	1464853	T	C	TTG	T>C	TTG	T>C	0.222	varscan2,strelka	upstream_gene_variant	MODIFIER	CR44842	intron	rho	FBgn0004635
D197R01	3L	3242439	C	A	GCA	C>A	GCA	C>A	0.143	mutect2,strelka	upstream_gene_variant	MODIFIER	CG17746	intergenic	intergenic	intergenic
D197R01	3L	7406038	T	C	TTG	T>C	TTG	T>C	0.238	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG8560	intergenic	intergenic	intergenic
D197R01	3L	9103307	C	T	CCT	C>T	CCT	C>T	0.191	somaticsniper,strelka	downstream_gene_variant	MODIFIER	bol	intron	bol	FBgn0011206
D197R01	3L	17493168	T	G	GTT	T>G	GTT	T>G	0.214	somaticsniper,strelka	upstream_gene_variant	MODIFIER	edin	intron	Oatp74D	FBgn0036732
D197R01	3L	18704520	C	G	TCT	C>G	TCT	C>G	0.205	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR44674	intergenic	intergenic	intergenic
D197R01	3R	6097449	C	T	ACG	C>T	ACG	C>T	0.167	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR44929	intron	Gasp	FBgn0026077
D197R01	3R	9455031	A	C	AAG	A>C	CTT	T>G	0.296	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	ps	3UTR	ps	FBgn0261552
D197R01	3R	11523799	T	C	GTC	T>C	GTC	T>C	0.154	somaticsniper,strelka	intergenic_region	MODIFIER	dpr5-dpr4	intergenic	intergenic	intergenic
D197R01	3R	19601283	G	A	GGA	G>A	TCC	C>T	0.0702	mutect2,strelka	missense_variant	MODERATE	CG7333	exon_3	CG7333	FBgn0038715
D197R01	3R	23831723	C	G	GCT	C>G	GCT	C>G	0.176	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	snRNA:U1:95Cb	intron	CG34355	FBgn0085384
D197R01	3R	25579313	A	T	AAG	A>T	CTT	T>A	0.156	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG4582	intron	msi	FBgn0011666
D197R01	X	3567779	G	T	TGG	G>T	CCA	C>A	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ppk8	intron	ppk8	FBgn0052792
D197R01	X	3807295	C	A	GCA	C>A	GCA	C>A	0.148	mutect2,varscan2,strelka	upstream_gene_variant	MODIFIER	CR44118	intron	fd3F	FBgn0264954
D197R01	X	8419000	A	C	CAA	A>C	TTG	T>G	0.526	mutect2,varscan2,somaticsniper,strelka,freebayes	upstream_gene_variant	MODIFIER	Trf2	intron	Trf2	FBgn0261793
D197R01	X	16762087	T	G	TTT	T>G	TTT	T>G	0.2	mutect2,strelka	intron_variant	MODIFIER	if	intron	if	FBgn0001250
D197R01	X	16762089	T	A	TTT	T>A	TTT	T>A	0.214	mutect2,strelka	intron_variant	MODIFIER	if	intron	if	FBgn0001250
D197R01	X	17291549	C	A	CCA	C>A	CCA	C>A	0.171	varscan2,somaticsniper	5_prime_UTR_premature_start_codon_gain_variant	LOW	Fim	5UTR	Fim	FBgn0024238
D197R03	2L	7961857	G	C	CGC	G>C	GCG	C>G	0.182	varscan2,somaticsniper	intron_variant	MODIFIER	Snoo	intron	Snoo	FBgn0085450
D197R03	2L	12105074	C	T	GCC	C>T	GCC	C>T	0.0	somaticsniper,strelka	missense_variant	MODERATE	Aats-thr	exon_3	ThrRS	FBgn0027081
D197R03	2L	12105094	C	T	ACT	C>T	ACT	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	Aats-thr	exon_3	ThrRS	FBgn0027081
D197R03	2L	19952491	A	G	GAG	A>G	CTC	T>C	0.299	varscan2,somaticsniper	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
D197R03	2L	19952504	G	A	TGG	G>A	CCA	C>T	0.29	varscan2,somaticsniper	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
D197R03	2L	20984681	C	T	GCC	C>T	GCC	C>T	0.093	mutect2,strelka	intron_variant	MODIFIER	CG42238	intron	CG42238	FBgn0250867
D197R03	2R	8799816	A	T	TAT	A>T	ATA	T>A	0.278	somaticsniper,strelka	intron_variant	MODIFIER	sns	intron	sns	FBgn0024189
D197R03	2R	12772204	G	A	GGG	G>A	CCC	C>T	0.0952	somaticsniper,strelka	intergenic_region	MODIFIER	CG12374-CR45266	intergenic	intergenic	intergenic
D197R03	2R	14264952	T	C	TTT	T>C	TTT	T>C	0.479	somaticsniper,strelka	downstream_gene_variant	MODIFIER	beta4GalNAcTA	intron	CG8547	FBgn0033919
D197R03	2R	14264953	T	C	TTA	T>C	TTA	T>C	0.479	somaticsniper,strelka	downstream_gene_variant	MODIFIER	beta4GalNAcTA	intron	CG8547	FBgn0033919
D197R03	2R	18308078	G	A	AGA	G>A	TCT	C>T	0.206	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14505	intron	sbb	FBgn0010575
D197R03	2R	20199601	G	C	TGG	G>C	CCA	C>G	0.242	varscan2,somaticsniper	intergenic_region	MODIFIER	CR45229-CG16894	intergenic	intergenic	intergenic
D197R03	2R	20199603	G	C	GGA	G>C	TCC	C>G	0.235	varscan2,somaticsniper	intergenic_region	MODIFIER	CR45229-CG16894	intergenic	intergenic	intergenic
D197R03	3L	870559	C	A	TCC	C>A	TCC	C>A	0.114	somaticsniper,strelka	missense_variant	MODERATE	CG12502	exon	CG12502	FBgn0035171
D197R03	3L	2518432	G	A	GGA	G>A	TCC	C>T	0.351	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45170	intron	Spn	FBgn0010905
D197R03	3L	6012872	C	T	GCA	C>T	GCA	C>T	0.13	mutect2,strelka	upstream_gene_variant	MODIFIER	alphaKap4	intron	PVRAP	FBgn0052406
D197R03	3L	8431218	A	T	AAT	A>T	ATT	T>A	0.238	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Cbl	3UTR	Cbl	FBgn0020224
D197R03	3L	11486304	T	A	TTG	T>A	TTG	T>A	0.0769	mutect2,strelka	upstream_gene_variant	MODIFIER	chrb	intergenic	intergenic	intergenic
D197R03	3L	12661444	G	A	AGG	G>A	CCT	C>T	0.241	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44552	intergenic	intergenic	intergenic
D197R03	3L	18106427	G	T	TGA	G>T	TCA	C>A	0.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13698	intergenic	intergenic	intergenic
D197R03	3L	18106437	G	T	CGA	G>T	TCG	C>A	0.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13698	intergenic	intergenic	intergenic
D197R03	3L	22338036	C	A	CCC	C>A	CCC	C>A	0.222	somaticsniper,strelka	intron_variant	MODIFIER	Ten-m	intron	Ten-m	FBgn0004449
D197R03	3L	23055049	T	A	ATT	T>A	ATT	T>A	0.151	somaticsniper,strelka	intergenic_region	MODIFIER	nrm-RpL10	intergenic	intergenic	intergenic
D197R03	3L	23938129	A	T	GAC	A>T	GTC	T>A	0.298	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CG40470	intron	CG40470	FBgn0058470
D197R03	3R	5993328	G	T	CGG	G>T	CCG	C>A	0.0	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44927	intergenic	intergenic	intergenic
D197R03	3R	8556354	A	G	AAA	A>G	TTT	T>C	0.0519	mutect2,strelka	downstream_gene_variant	MODIFIER	Or85d	intergenic	intergenic	intergenic
D197R03	3R	13813157	C	T	ACC	C>T	ACC	C>T	0.0426	mutect2,strelka	5_prime_UTR_variant	MODIFIER	tal-AA	5UTR	tal-AA	FBgn0259733
D197R03	3R	20446910	G	A	GGC	G>A	GCC	C>T	0.0833	mutect2,strelka	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
D197R03	3R	27398530	A	T	AAC	A>T	GTT	T>A	0.177	mutect2,varscan2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	side	intron	side	FBgn0016061
D197R03	X	5090657	A	G	GAA	A>G	TTC	T>C	0.212	somaticsniper,strelka	intron_variant	MODIFIER	rg	intron	rg	FBgn0266098
D197R03	X	5585992	T	C	TTT	T>C	TTT	T>C	0.167	somaticsniper,strelka	intergenic_region	MODIFIER	Vsx2-Vsx1	intergenic	intergenic	intergenic
D197R03	X	10925544	G	C	TGG	G>C	CCA	C>G	0.219	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	v	3UTR	v	FBgn0003965
D197R03	X	15309477	C	T	CCC	C>T	CCC	C>T	0.0	somaticsniper,strelka	intron_variant	MODIFIER	gce	intron	gce	FBgn0261703
D197R03	X	15452063	C	T	TCG	C>T	TCG	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	Ahcy13	exon	Ahcy13	FBgn0014455
D197R03	X	16236040	C	A	CCA	C>A	CCA	C>A	0.182	somaticsniper,strelka	intergenic_region	MODIFIER	disco-snRNA:U5:14B	intergenic	intergenic	intergenic
D197R05	2L	4350445	G	A	AGA	G>A	TCT	C>T	0.189	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44700	intergenic	intergenic	intergenic
D197R05	2L	8291037	C	A	GCA	C>A	GCA	C>A	0.508	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43752	intron	Btk29A	FBgn0003502
D197R05	2L	12181518	C	A	CCA	C>A	CCA	C>A	0.204	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	atilla	intron	bru1	FBgn0000114
D197R05	2L	19290998	G	T	GGG	G>T	CCC	C>A	0.185	somaticsniper,strelka	intergenic_region	MODIFIER	CR44190-CG17564	intergenic	intergenic	intergenic
D197R05	2R	12493208	A	T	AAC	A>T	GTT	T>A	0.156	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	fdl	intron	fdl	FBgn0045063
D197R05	2R	14281766	A	T	CAC	A>T	GTG	T>A	0.0615	mutect2,strelka	intron_variant	MODIFIER	Ih	intron	Ih	FBgn0263397
D197R05	2R	16395250	G	A	TGT	G>A	ACA	C>T	0.0606	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Sema-2b	intron	Sema-2b	FBgn0264273
D197R05	2R	16912365	T	C	TTG	T>C	TTG	T>C	0.08	mutect2,strelka	intergenic_region	MODIFIER	inaC-Pkc53E	intergenic	intergenic	intergenic
D197R05	2R	19153878	A	C	AAC	A>C	GTT	T>G	0.283	somaticsniper,strelka	upstream_gene_variant	MODIFIER	ena	intron	ena	FBgn0000578
D197R05	2R	21912724	T	C	ATT	T>C	ATT	T>C	0.107	mutect2,strelka	intron_variant	MODIFIER	Fili	intron	Fili	FBgn0085397
D197R05	2R	24138825	T	C	TTG	T>C	TTG	T>C	0.169	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG4065	exon_1	CR44826	FBgn0266073
D197R05	3L	4836780	A	C	GAA	A>C	TTC	T>G	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13708	intergenic	intergenic	intergenic
D197R05	3L	4836781	A	G	AAC	A>G	GTT	T>C	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13708	intergenic	intergenic	intergenic
D197R05	3L	12633614	C	A	TCG	C>A	TCG	C>A	0.151	mutect2,strelka	non_coding_transcript_exon_variant	MODIFIER	CR32111	exon_2	CR32111	FBgn0052111
D197R05	3L	12633619	A	G	CAC	A>G	GTG	T>C	0.147	mutect2,strelka	non_coding_transcript_exon_variant	MODIFIER	CR32111	exon_2	CR32111	FBgn0052111
D197R05	3L	14107842	A	T	AAG	A>T	CTT	T>A	0.476	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Sox21a	exon_1	Sox21a	FBgn0036411
D197R05	3L	16068297	G	A	GGC	G>A	GCC	C>T	0.0543	mutect2,strelka	missense_variant	MODERATE	Mbs	exon_11	Mbs	FBgn0005536
D197R05	3L	16454120	C	G	GCT	C>G	GCT	C>G	0.2	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	dsx-c73A	intron	CG33158	FBgn0053158
D197R05	3L	20816441	T	C	ATT	T>C	ATT	T>C	0.205	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	Pka-R1	5UTR	Pka-R1	FBgn0259243
D197R05	3L	25489041	T	C	CTC	T>C	CTC	T>C	0.16	somaticsniper,strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
D197R05	3L	27086902	T	C	GTC	T>C	GTC	T>C	0.123	mutect2,strelka	upstream_gene_variant	MODIFIER	CG40228	intergenic	intergenic	intergenic
D197R05	3R	961424	G	C	TGG	G>C	CCA	C>G	0.137	mutect2,somaticsniper	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R05	3R	1527840	T	C	CTG	T>C	CTG	T>C	0.27	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R05	3R	5772058	C	T	CCC	C>T	CCC	C>T	0.0783	mutect2,strelka	upstream_gene_variant	MODIFIER	CG2082	intron	CG2082	FBgn0027608
D197R05	3R	9030300	C	T	ACT	C>T	ACT	C>T	0.162	somaticsniper,strelka	intron_variant	MODIFIER	neur	intron	neur	FBgn0002932
D197R05	3R	13820282	T	G	CTT	T>G	CTT	T>G	0.0899	mutect2,strelka	downstream_gene_variant	MODIFIER	CR43641	intergenic	intergenic	intergenic
D197R05	3R	14152400	G	A	CGT	G>A	ACG	C>T	0.037	somaticsniper,strelka	synonymous_variant	LOW	CG42500	exon	CG42500	FBgn0260226
D197R05	3R	19189747	T	C	GTG	T>C	GTG	T>C	0.0649	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG31475	5UTR	CG31475	FBgn0051475
D197R05	X	9374637	T	C	TTC	T>C	TTC	T>C	0.333	somaticsniper,strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
D197R05	X	12558859	G	T	TGG	G>T	CCA	C>A	0.194	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	Cpr11B	intron	CG43921	FBgn0264542
D197R07	2L	6078065	C	A	GCC	C>A	GCC	C>A	0.25	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CR43801	intergenic	intergenic	intergenic
D197R07	2L	8380471	T	G	GTC	T>G	GTC	T>G	0.0	somaticsniper,strelka	synonymous_variant	LOW	Aats-ala	exon_2	AlaRS	FBgn0027094
D197R07	2L	12105074	C	T	GCC	C>T	GCC	C>T	0.0	somaticsniper,strelka	missense_variant	MODERATE	Aats-thr	exon_3	ThrRS	FBgn0027081
D197R07	2L	12105094	C	T	ACT	C>T	ACT	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	Aats-thr	exon_3	ThrRS	FBgn0027081
D197R07	2L	14446228	T	C	ATT	T>C	ATT	T>C	0.212	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CR45726	intergenic	intergenic	intergenic
D197R07	2L	17724314	C	T	ACC	C>T	ACC	C>T	0.0	somaticsniper,strelka	intron_variant	MODIFIER	CadN	intron	CadN	FBgn0015609
D197R07	2L	18462053	T	C	TTT	T>C	TTT	T>C	0.257	freebayes	intron_variant	MODIFIER	let-7-C	ncRNA	let-7-C	FBgn0263049
D197R07	2L	21031967	G	T	GGA	G>T	TCC	C>A	0.0	somaticsniper,strelka	intron_variant	MODIFIER	CG42238	intron	CG42238	FBgn0250867
D197R07	2R	1535041	T	C	TTC	T>C	TTC	T>C	0.231	somaticsniper,strelka	intergenic_region	MODIFIER	Maf1-CG17691	intergenic	intergenic	intergenic
D197R07	2R	12105300	T	A	GTG	T>A	GTG	T>A	0.176	varscan2,somaticsniper	intron_variant	MODIFIER	jeb	intron	jeb	FBgn0086677
D197R07	2R	12105301	G	T	TGG	G>T	CCA	C>A	0.176	varscan2,somaticsniper	intron_variant	MODIFIER	jeb	intron	jeb	FBgn0086677
D197R07	2R	14254195	G	A	TGG	G>A	CCA	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	Hsc70-5	exon_4	Hsc70-5	FBgn0001220
D197R07	2R	17134446	A	G	AAA	A>G	TTT	T>C	0.0	somaticsniper,strelka	missense_variant	MODERATE	CG11400	exon	CG11400	FBgn0034198
D197R07	2R	20389694	C	T	ACA	C>T	ACA	C>T	0.4	varscan2,somaticsniper	intergenic_region	MODIFIER	CG11192-CG12484	intergenic	intergenic	intergenic
D197R07	2R	20511246	T	G	CTC	T>G	CTC	T>G	0.185	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44644	exon_1	CR44648	FBgn0265859
D197R07	2R	21389839	G	T	CGT	G>T	ACG	C>A	0.161	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	EfSec	intron	Acox57D-d	FBgn0034629
D197R07	2R	21504345	A	C	CAT	A>C	ATG	T>G	0.364	somaticsniper,strelka	upstream_gene_variant	MODIFIER	TAF1C-like	intron	MESK2	FBgn0043070
D197R07	3L	987529	C	G	ACC	C>G	ACC	C>G	0.184	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
D197R07	3L	3286827	C	A	CCA	C>A	CCA	C>A	0.32	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG12009	intron	CG12017	FBgn0035429
D197R07	3L	3520669	A	T	AAA	A>T	TTT	T>A	0.145	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45043	intron	Eip63E	FBgn0005640
D197R07	3L	4680287	T	C	GTA	T>C	GTA	T>C	0.257	freebayes	downstream_gene_variant	MODIFIER	CG34266	intron	axo	FBgn0262870
D197R07	3L	11923834	G	A	TGC	G>A	GCA	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	CG5718	exon	SdhAL	FBgn0036222
D197R07	3L	11923843	A	G	GAT	A>G	ATC	T>C	0.0	somaticsniper,strelka	synonymous_variant	LOW	CG5718	exon	SdhAL	FBgn0036222
D197R07	3L	11923846	A	G	GAA	A>G	TTC	T>C	0.0	somaticsniper,strelka	synonymous_variant	LOW	CG5718	exon	SdhAL	FBgn0036222
D197R07	3L	12182454	G	A	AGT	G>A	ACT	C>T	0.359	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG6910	intron	CAH2	FBgn0027843
D197R07	3L	12237065	A	G	GAG	A>G	CTC	T>C	0.171	mutect2,strelka	intron_variant	MODIFIER	app	intron	app	FBgn0260941
D197R07	3L	18364784	T	C	TTT	T>C	TTT	T>C	0.217	somaticsniper,strelka	intergenic_region	MODIFIER	grim-rpr	intergenic	intergenic	intergenic
D197R07	3L	23754657	T	C	GTA	T>C	GTA	T>C	0.0	somaticsniper,strelka	intergenic_region	MODIFIER	CG17698-CG43968	intergenic	intergenic	intergenic
D197R07	3L	24866259	T	C	GTT	T>C	GTT	T>C	0.194	somaticsniper,strelka	intergenic_region	MODIFIER	scro-CG40472	intergenic	intergenic	intergenic
D197R07	3L	24866277	C	T	TCG	C>T	TCG	C>T	0.194	somaticsniper,strelka	intergenic_region	MODIFIER	scro-CG40472	intergenic	intergenic	intergenic
D197R07	3L	25840342	A	T	AAG	A>T	CTT	T>A	0.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45182	intron	CG40178	FBgn0058178
D197R07	3L	25840358	A	T	CAT	A>T	ATG	T>A	0.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR45182	intron	CG40178	FBgn0058178
D197R07	3R	2090452	A	T	TAT	A>T	ATA	T>A	0.277	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R07	3R	2090506	A	T	TAT	A>T	ATA	T>A	0.283	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R07	3R	2090539	A	C	CAC	A>C	GTG	T>G	0.277	somaticsniper,strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R07	3R	5993328	G	T	CGG	G>T	CCG	C>A	0.0233	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44927	intergenic	intergenic	intergenic
D197R07	3R	6293213	T	G	ATC	T>G	ATC	T>G	0.174	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	Osi13	3UTR	Osi13	FBgn0037422
D197R07	3R	6293214	C	T	TCG	C>T	TCG	C>T	0.17	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	Osi13	3UTR	Osi13	FBgn0037422
D197R07	3R	10143424	C	G	GCT	C>G	GCT	C>G	0.167	varscan2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	TAF1B	3UTR	CG42759	FBgn0261817
D197R07	3R	15709573	T	C	ATA	T>C	ATA	T>C	0.182	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG5404	intergenic	intergenic	intergenic
D197R07	3R	16713444	A	T	CAC	A>T	GTG	T>A	0.35	somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Ubx	intron	Ubx	FBgn0003944
D197R07	3R	16713461	A	G	GAA	A>G	TTC	T>C	0.304	somaticsniper,strelka	intron_variant	MODIFIER	Ubx	intron	Ubx	FBgn0003944
D197R07	3R	28892489	C	G	GCC	C>G	GCC	C>G	0.263	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG33203	intron	Doa	FBgn0265998
D197R07	3R	29802108	C	T	TCT	C>T	TCT	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	CG7834	exon	CG7834	FBgn0039697
D197R07	3R	30276464	C	T	ACT	C>T	ACT	C>T	0.256	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR46113	intergenic	intergenic	intergenic
D197R07	3R	32061897	T	C	ATC	T>C	ATC	T>C	0.257	freebayes	intron_variant	MODIFIER	Map205	intron	Map205	FBgn0002645
D197R07	X	4841694	T	A	TTT	T>A	TTT	T>A	0.176	mutect2,strelka	intron_variant	MODIFIER	CG42594	intron	CG42594	FBgn0260971
D197R07	X	5090656	G	A	GGA	G>A	TCC	C>T	0.25	somaticsniper,strelka	intron_variant	MODIFIER	rg	intron	rg	FBgn0266098
D197R07	X	6346906	C	T	TCA	C>T	TCA	C>T	0.154	mutect2,strelka	upstream_gene_variant	MODIFIER	CG3847	intergenic	intergenic	intergenic
D197R07	X	7390665	A	G	TAG	A>G	CTA	T>C	0.0	somaticsniper,strelka	intron_variant	MODIFIER	CR44357	intron	CG1677	FBgn0029941
D197R07	X	8250893	G	A	AGA	G>A	TCT	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	ND75	exon_3	ND-75	FBgn0017566
D197R07	X	8250896	G	A	TGG	G>A	CCA	C>T	0.0	somaticsniper,strelka	synonymous_variant	LOW	ND75	exon_3	ND-75	FBgn0017566
D197R07	X	9905666	A	G	CAA	A>G	TTG	T>C	0.138	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG1986	intergenic	intergenic	intergenic
D197R07	X	10027587	A	G	GAT	A>G	ATC	T>C	0.257	freebayes	intron_variant	MODIFIER	Cht6	intron	Cht6	FBgn0263132
D197R07	X	10262142	G	C	AGT	G>C	ACT	C>G	0.194	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Hk	intron	Hk	FBgn0263220
D197R07	X	10262152	C	G	CCA	C>G	CCA	C>G	0.217	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Hk	intron	Hk	FBgn0263220
D197R07	X	12589325	T	G	ATT	T>G	ATT	T>G	0.182	somaticsniper,strelka	splice_region_variant&intron_variant	LOW	LIMK1	5UTR	LIMK1	FBgn0283712
D197R07	X	15916326	A	C	CAA	A>C	TTG	T>G	0.344	somaticsniper,strelka	intron_variant	MODIFIER	CG8909	intron	CG8909	FBgn0030706
D197R07	X	16236040	C	A	CCA	C>A	CCA	C>A	0.163	somaticsniper,strelka	intergenic_region	MODIFIER	disco-snRNA:U5:14B	intergenic	intergenic	intergenic
D197R07	X	19608965	A	G	GAC	A>G	GTC	T>C	0.257	freebayes	upstream_gene_variant	MODIFIER	Tyler	intron	CG14207	FBgn0031037
D197R07	X	20861860	G	A	AGA	G>A	TCT	C>T	0.189	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR43193	intron	shakB	FBgn0085387
D197R07	X	22510178	A	G	CAT	A>G	ATG	T>C	0.231	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43962	intergenic	intergenic	intergenic
D197R07	Y	498215	T	A	TTC	T>A	TTC	T>A	0.0	somaticsniper,strelka	intron_variant	MODIFIER	kl-3	intron	kl-3	FBgn0267432
D197R07	Y	2908679	G	C	AGA	G>C	TCT	C>G	0.294	somaticsniper,strelka	intergenic_region	MODIFIER	Su(Ste):CR42424-fdy	intergenic	intergenic	intergenic
D197R07	Y	3246106	G	A	TGA	G>A	TCA	C>T	0.0	somaticsniper,strelka	intergenic_region	MODIFIER	CR41504-CG41423	intergenic	intergenic	intergenic
D197R07	Y	3246145	T	C	GTT	T>C	GTT	T>C	0.0	somaticsniper,strelka	intergenic_region	MODIFIER	CR41504-CG41423	intergenic	intergenic	intergenic
D197R07	Y	3520114	C	T	GCC	C>T	GCC	C>T	0.262	somaticsniper,strelka	intergenic_region	MODIFIER	CR45780-Pp1-Y2	intergenic	intergenic	intergenic
HUM-1	2L	4938441	T	G	CTT	T>G	CTT	T>G	0.333	somaticsniper,strelka	synonymous_variant	LOW	Sgs1	exon	Sgs1	FBgn0003372
HUM-1	2L	10441810	C	T	GCA	C>T	GCA	C>T	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	loh	intergenic	intergenic	intergenic
HUM-1	2L	10441811	A	C	CAA	A>C	TTG	T>G	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	loh	intergenic	intergenic	intergenic
HUM-1	2L	10708954	G	A	GGC	G>A	GCC	C>T	0.143	mutect2,varscan2	5_prime_UTR_variant	MODIFIER	Lip2	exon_1	Lip2	FBgn0024740
HUM-1	2L	16365499	T	G	GTG	T>G	GTG	T>G	0.375	somaticsniper,strelka	upstream_gene_variant	MODIFIER	jhamt	intergenic	intergenic	intergenic
HUM-1	2L	16672134	G	A	CGC	G>A	GCG	C>T	0.25	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	Trpgamma	intron	Trpgamma	FBgn0032593
HUM-1	2L	18416468	G	A	CGC	G>A	GCG	C>T	0.308	somaticsniper,strelka	intergenic_region	MODIFIER	CR44487-CR44488	intergenic	intergenic	intergenic
HUM-1	2L	18773932	G	A	GGT	G>A	ACC	C>T	0.2	mutect2,varscan2	upstream_gene_variant	MODIFIER	CR43804	intron	ham	FBgn0045852
HUM-1	2L	23328801	C	T	TCA	C>T	TCA	C>T	0.231	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR42530	intergenic	intergenic	intergenic
HUM-1	2R	1951544	A	G	AAG	A>G	CTT	T>C	0.286	somaticsniper,strelka	intron_variant	MODIFIER	CG17684	intron	CG17684	FBgn0263780
HUM-1	2R	2886643	T	G	GTC	T>G	GTC	T>G	0.267	somaticsniper,strelka	intergenic_region	MODIFIER	CG41378-Scp1	intergenic	intergenic	intergenic
HUM-1	2R	2886644	C	T	TCG	C>T	TCG	C>T	0.267	somaticsniper,strelka	intergenic_region	MODIFIER	CG41378-Scp1	intergenic	intergenic	intergenic
HUM-1	2R	3142103	G	A	TGT	G>A	ACA	C>T	0.364	somaticsniper,strelka	intron_variant	MODIFIER	CG42596	intron	dpr21	FBgn0260995
HUM-1	2R	4362105	G	C	TGG	G>C	CCA	C>G	0.429	somaticsniper,strelka	intron_variant	MODIFIER	Gprk1	intron	Gprk1	FBgn0260798
HUM-1	2R	6757518	C	T	GCA	C>T	GCA	C>T	0.2	mutect2,strelka	upstream_gene_variant	MODIFIER	CG3420	intergenic	intergenic	intergenic
HUM-1	2R	10292254	G	A	CGC	G>A	GCG	C>T	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CAP	intron	CAP	FBgn0033504
HUM-1	2R	11489765	G	C	TGT	G>C	ACA	C>G	0.357	somaticsniper,strelka	intron_variant	MODIFIER	inv	intron	inv	FBgn0001269
HUM-1	2R	15270720	G	A	CGT	G>A	ACG	C>T	0.273	mutect2,varscan2,somaticsniper,strelka	missense_variant	MODERATE	Trpm	exon_22	Trpm	FBgn0265194
HUM-1	2R	19727148	C	T	TCG	C>T	TCG	C>T	0.231	varscan2,strelka	upstream_gene_variant	MODIFIER	tRNA:CR30452	exon_1	snoRNA:185	FBgn0065076
HUM-1	2R	20949663	G	A	CGA	G>A	TCG	C>T	0.167	mutect2,varscan2	upstream_gene_variant	MODIFIER	CG33704	intergenic	intergenic	intergenic
HUM-1	2R	21849183	G	A	TGT	G>A	ACA	C>T	0.3	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	tRNA:CR30406	intergenic	intergenic	intergenic
HUM-1	2R	22747475	C	T	GCA	C>T	GCA	C>T	0.25	mutect2,somaticsniper	synonymous_variant	LOW	CG42260	exon_6	CG42260	FBgn0259145
HUM-1	2R	23318709	G	A	AGG	G>A	CCT	C>T	0.273	mutect2,somaticsniper,strelka	synonymous_variant	LOW	CG30412	exon	CG30412	FBgn0050412
HUM-1	2R	23851154	T	G	ATA	T>G	ATA	T>G	0.273	mutect2,varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	ytr	exon_1	CR45928	FBgn0267590
HUM-1	3L	1301550	C	A	TCA	C>A	TCA	C>A	0.375	mutect2,somaticsniper	3_prime_UTR_variant	MODIFIER	Rac1	3UTR	Rac1	FBgn0010333
HUM-1	3L	2338521	A	T	TAT	A>T	ATA	T>A	0.25	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	MsR1	intron	MsR1	FBgn0035331
HUM-1	3L	5401760	G	A	CGT	G>A	ACG	C>T	0.417	somaticsniper,strelka	intergenic_region	MODIFIER	Ir64a-CG34391	intergenic	intergenic	intergenic
HUM-1	3L	7563402	A	C	TAA	A>C	TTA	T>G	0.571	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14837	intron	frac	FBgn0035798
HUM-1	3L	7563403	A	C	AAA	A>C	TTT	T>G	0.571	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG14837	intron	frac	FBgn0035798
HUM-1	3L	9070358	T	C	CTT	T>C	CTT	T>C	1.0	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG4911	3UTR	CG4911	FBgn0035959
HUM-1	3L	12183153	A	C	AAC	A>C	GTT	T>G	0.385	varscan2,somaticsniper	3_prime_UTR_variant	MODIFIER	CAH2	3UTR	CAH2	FBgn0027843
HUM-1	3L	14062908	T	A	ATC	T>A	ATC	T>A	0.308	varscan2,somaticsniper	intron_variant	MODIFIER	CG32138	intron	Frl	FBgn0267795
HUM-1	3L	14932223	A	G	AAA	A>G	TTT	T>C	0.273	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	DCX-EMAP	intron	DCX-EMAP	FBgn0259099
HUM-1	3L	22097091	T	C	GTC	T>C	GTC	T>C	0.5	somaticsniper,strelka	intergenic_region	MODIFIER	msopa-CR45236	intergenic	intergenic	intergenic
HUM-1	3L	23938586	C	T	TCC	C>T	TCC	C>T	0.556	somaticsniper,strelka	intron_variant	MODIFIER	CG40470	intron	CG40470	FBgn0058470
HUM-1	3R	2452	C	T	CCA	C>T	CCA	C>T	0.444	somaticsniper,strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
HUM-1	3R	7184724	C	T	CCC	C>T	CCC	C>T	0.381	varscan2,somaticsniper	missense_variant	MODERATE	CG10055	exon	CG10055	FBgn0037482
HUM-1	3R	8739162	A	C	AAC	A>C	GTT	T>G	0.235	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG8202	intron	CG9801	FBgn0037623
HUM-1	3R	9908513	C	T	TCT	C>T	TCT	C>T	0.211	varscan2,somaticsniper	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
HUM-1	3R	13098939	A	G	CAA	A>G	TTG	T>C	0.273	mutect2,strelka	missense_variant	MODERATE	timeout	exon_6	timeout	FBgn0038118
HUM-1	3R	15924972	C	T	TCT	C>T	TCT	C>T	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR46028	intron	Fbxl7	FBgn0038385
HUM-1	3R	17229481	A	T	GAA	A>T	TTC	T>A	0.333	somaticsniper,strelka	downstream_gene_variant	MODIFIER	beat-IIb	intergenic	intergenic	intergenic
HUM-1	3R	18090435	T	C	TTG	T>C	TTG	T>C	0.385	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	sr	intergenic	intergenic	intergenic
HUM-1	3R	18371610	A	C	AAA	A>C	TTT	T>G	0.357	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	CG14310	intron	gl	FBgn0004618
HUM-1	3R	19405835	C	T	ACA	C>T	ACA	C>T	0.182	mutect2,varscan2	stop_gained	HIGH	CG5316	exon	CG5316	FBgn0038704
HUM-1	3R	20279147	A	T	CAC	A>T	GTG	T>A	0.182	somaticsniper,strelka	intron_variant	MODIFIER	cic	intron	cic	FBgn0262582
HUM-1	3R	21523590	C	T	TCA	C>T	TCA	C>T	0.444	mutect2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	CG7956	exon_4	CG7956	FBgn0038890
HUM-1	3R	22201757	C	T	GCT	C>T	GCT	C>T	0.273	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	SKIP	ncRNA	CR45224	FBgn0266751
HUM-1	3R	31681844	T	C	GTC	T>C	GTC	T>C	1.0	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG11550	intergenic	intergenic	intergenic
HUM-1	4	631279	T	G	GTT	T>G	GTT	T>G	0.231	mutect2,varscan2,strelka	downstream_gene_variant	MODIFIER	CG9935	intron	Gat	FBgn0039915
HUM-1	X	1801952	C	T	GCG	C>T	GCG	C>T	1.0	somaticsniper,strelka	intron_variant	MODIFIER	CG42666	intron	CG42666	FBgn0261548
HUM-1	X	5879109	C	T	GCG	C>T	GCG	C>T	1.0	somaticsniper,strelka	missense_variant	MODERATE	CG3016	exon_2	Usp30	FBgn0029819
HUM-1	X	12124437	G	A	TGG	G>A	CCA	C>T	0.259	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
HUM-1	X	12124473	T	C	CTT	T>C	CTT	T>C	0.269	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
HUM-1	X	12124474	T	G	TTA	T>G	TTA	T>G	0.269	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
HUM-1	X	14301299	A	T	TAG	A>T	CTA	T>A	1.0	somaticsniper,strelka,freebayes	intergenic_region	MODIFIER	CR44963-betaNACtes2	intergenic	intergenic	intergenic
HUM-4	2L	2722009	T	C	TTT	T>C	TTT	T>C	0.241	mutect2,somaticsniper	upstream_gene_variant	MODIFIER	CG31689	intergenic	intergenic	intergenic
HUM-4	2L	2742827	T	C	GTC	T>C	GTC	T>C	0.364	somaticsniper,strelka	synonymous_variant	LOW	Hrs	exon	Hrs	FBgn0031450
HUM-4	2L	2742860	A	T	CAC	A>T	GTG	T>A	0.304	somaticsniper,strelka	synonymous_variant	LOW	Hrs	exon	Hrs	FBgn0031450
HUM-4	2L	3058354	A	G	GAG	A>G	CTC	T>C	0.25	mutect2,somaticsniper,strelka	downstream_gene_variant	MODIFIER	v(2)k05816	intron	FASN1	FBgn0283427
HUM-4	2L	4949701	G	T	CGC	G>T	GCG	C>A	0.267	mutect2,somaticsniper	5_prime_UTR_variant	MODIFIER	jet	5UTR	jet	FBgn0031652
HUM-4	2L	4949703	A	G	CAC	A>G	GTG	T>C	0.267	mutect2,somaticsniper	5_prime_UTR_variant	MODIFIER	jet	5UTR	jet	FBgn0031652
HUM-4	2L	5405274	A	C	CAT	A>C	ATG	T>G	0.357	somaticsniper,strelka	intron_variant	MODIFIER	H15	intron	H15	FBgn0016660
HUM-4	2L	6555729	A	G	TAT	A>G	ATA	T>C	0.25	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	Osm6	3UTR	IFT52	FBgn0031829
HUM-4	2L	7458149	C	T	GCG	C>T	GCG	C>T	0.2	mutect2,strelka	synonymous_variant	LOW	Gr28b	exon_1	Gr28b	FBgn0045495
HUM-4	2L	9529275	A	G	TAA	A>G	TTA	T>C	0.35	somaticsniper,strelka	missense_variant	MODERATE	CG31883	exon	CG31883	FBgn0032122
HUM-4	2L	11791415	T	G	ATA	T>G	ATA	T>G	0.419	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG14931	intron	Tsp33B	FBgn0032376
HUM-4	2L	12750790	T	G	GTA	T>G	GTA	T>G	0.263	somaticsniper,strelka	intergenic_region	MODIFIER	MRP-CG15483	intron	MRP	FBgn0032456
HUM-4	2L	12768389	C	A	CCG	C>A	CCG	C>A	0.174	somaticsniper,strelka	intergenic_region	MODIFIER	CG15483-CR43818	ncRNA	CR46206	FBgn0267925
HUM-4	2L	14404362	A	C	AAA	A>C	TTT	T>G	0.241	somaticsniper,strelka	intron_variant	MODIFIER	elB	intron	elB	FBgn0004858
HUM-4	2L	14968841	G	T	TGC	G>T	GCA	C>A	0.472	somaticsniper,strelka	intron_variant	MODIFIER	CG42313	intron	CG42313	FBgn0259213
HUM-4	2L	15069023	C	A	CCA	C>A	CCA	C>A	0.406	somaticsniper,strelka	upstream_gene_variant	MODIFIER	vig	intron	vig	FBgn0024183
HUM-4	2L	18844679	A	T	AAA	A>T	TTT	T>A	0.3	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG10600	intergenic	intergenic	intergenic
HUM-4	2L	19517373	A	T	AAA	A>T	TTT	T>A	0.375	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG10186	intergenic	intergenic	intergenic
HUM-4	2L	19606004	G	C	TGG	G>C	CCA	C>G	0.586	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44978	intron	Lar	FBgn0000464
HUM-4	2L	19628838	T	C	ATA	T>C	ATA	T>C	0.533	somaticsniper,strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
HUM-4	2L	21622298	A	G	AAT	A>G	ATT	T>C	0.208	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG2201	intron	CG2201	FBgn0032955
HUM-4	2L	21681173	G	T	CGG	G>T	CCG	C>A	0.364	somaticsniper,strelka	synonymous_variant	LOW	EF2	exon_3	EF2	FBgn0000559
HUM-4	2L	21681176	C	A	GCG	C>A	GCG	C>A	0.364	somaticsniper,strelka	synonymous_variant	LOW	EF2	exon_3	EF2	FBgn0000559
HUM-4	2R	4240412	C	T	GCT	C>T	GCT	C>T	0.242	somaticsniper,strelka	intron_variant	MODIFIER	IntS3	intron	IntS3	FBgn0262117
HUM-4	2R	4240432	C	A	CCA	C>A	CCA	C>A	0.351	somaticsniper,strelka	intron_variant	MODIFIER	IntS3	intron	IntS3	FBgn0262117
HUM-4	2R	6200750	A	T	AAA	A>T	TTT	T>A	0.25	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Ptr	intergenic	intergenic	intergenic
HUM-4	2R	7881013	T	C	CTA	T>C	CTA	T>C	0.222	varscan2,somaticsniper	intron_variant	MODIFIER	Dgk	intron	Dgk	FBgn0085390
HUM-4	2R	8480973	A	C	AAA	A>C	TTT	T>G	0.344	somaticsniper,strelka	intron_variant	MODIFIER	mtt	intron	mtt	FBgn0050361
HUM-4	2R	8891194	T	G	CTC	T>G	CTC	T>G	0.19	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Dmn	intron	CG8272	FBgn0033337
HUM-4	2R	9214087	G	A	GGC	G>A	GCC	C>T	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44451	intergenic	intergenic	intergenic
HUM-4	2R	9214088	C	A	GCA	C>A	GCA	C>A	0.4	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44451	intergenic	intergenic	intergenic
HUM-4	2R	9632091	C	T	ACG	C>T	ACG	C>T	0.19	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR44070	intron	Mmp2	FBgn0033438
HUM-4	2R	9721989	A	G	TAT	A>G	ATA	T>C	0.444	somaticsniper,strelka	intron_variant	MODIFIER	sqa	intron	sqa	FBgn0259678
HUM-4	2R	10098597	A	C	CAT	A>C	ATG	T>G	0.462	somaticsniper,strelka	missense_variant	MODERATE	RpLP0-like	exon	RpLP0-like	FBgn0033485
HUM-4	2R	10565295	T	G	TTG	T>G	TTG	T>G	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	psq	intron	psq	FBgn0263102
HUM-4	2R	11841463	T	G	ATT	T>G	ATT	T>G	0.464	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Sobp	intergenic	intergenic	intergenic
HUM-4	2R	12511024	G	C	CGA	G>C	TCG	C>G	0.269	somaticsniper,strelka	upstream_gene_variant	MODIFIER	vis	intergenic	intergenic	intergenic
HUM-4	2R	12511044	G	T	CGT	G>T	ACG	C>A	0.526	somaticsniper,strelka	upstream_gene_variant	MODIFIER	vis	intergenic	intergenic	intergenic
HUM-4	2R	13455864	C	T	GCC	C>T	GCC	C>T	0.273	mutect2,somaticsniper,strelka	missense_variant	MODERATE	arr	exon_6	arr	FBgn0000119
HUM-4	2R	15106703	C	T	GCG	C>T	GCG	C>T	0.2	mutect2,strelka	intergenic_region	MODIFIER	CR44457-chn	intergenic	intergenic	intergenic
HUM-4	2R	15763278	A	C	AAC	A>C	GTT	T>G	0.522	somaticsniper,strelka	splice_region_variant&intron_variant	LOW	Zasp52	intron	Zasp52	FBgn0265991
HUM-4	2R	15881302	C	T	GCG	C>T	GCG	C>T	0.444	somaticsniper,strelka	intron_variant	MODIFIER	sli	intron	sli	FBgn0264089
HUM-4	2R	18158285	G	C	GGG	G>C	CCC	C>G	0.367	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG10914	5UTR	CG10914	FBgn0034307
HUM-4	2R	19137129	G	T	TGA	G>T	TCA	C>A	0.6	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG15118	exon_1	CG15118	FBgn0034418
HUM-4	2R	21028370	A	T	TAC	A>T	GTA	T>A	0.278	somaticsniper,strelka	downstream_gene_variant	MODIFIER	RIC-3	intergenic	intergenic	intergenic
HUM-4	2R	21396324	T	A	TTT	T>A	TTT	T>A	0.235	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Acox57D-d	intron	Sdc	FBgn0010415
HUM-4	2R	22681594	A	T	TAA	A>T	TTA	T>A	0.195	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Ppa	intergenic	intergenic	intergenic
HUM-4	2R	22937212	T	G	TTT	T>G	TTT	T>G	0.681	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3788	intergenic	intergenic	intergenic
HUM-4	2R	22937232	G	C	AGA	G>C	TCT	C>G	0.259	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG3788	intergenic	intergenic	intergenic
HUM-4	3L	4493005	A	G	GAC	A>G	GTC	T>C	0.872	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13722	intergenic	intergenic	intergenic
HUM-4	3L	5415051	T	A	ATT	T>A	ATT	T>A	0.211	somaticsniper,strelka	intergenic_region	MODIFIER	Ir64a-CG34391	intergenic	intergenic	intergenic
HUM-4	3L	5415053	A	G	TAA	A>G	TTA	T>C	0.304	somaticsniper,strelka	intergenic_region	MODIFIER	Ir64a-CG34391	intergenic	intergenic	intergenic
HUM-4	3L	5758528	C	A	ACT	C>A	ACT	C>A	0.389	mutect2,varscan2,somaticsniper,strelka	stop_gained	HIGH	Ubp64E	exon_4	Usp47	FBgn0016756
HUM-4	3L	7202752	T	A	ATA	T>A	ATA	T>A	0.406	somaticsniper,strelka	intergenic_region	MODIFIER	Dscam2-CR45410	intergenic	intergenic	intergenic
HUM-4	3L	11498324	C	A	CCT	C>A	CCT	C>A	0.25	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	chrb	3UTR	chrb	FBgn0036165
HUM-4	3L	12220794	A	G	CAA	A>G	TTG	T>C	0.375	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	app	5UTR	app	FBgn0260941
HUM-4	3L	14384473	T	G	ATT	T>G	ATT	T>G	0.605	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG43120	intergenic	intergenic	intergenic
HUM-4	3L	14933852	G	C	TGA	G>C	TCA	C>G	0.536	somaticsniper,strelka	intron_variant	MODIFIER	DCX-EMAP	intron	DCX-EMAP	FBgn0259099
HUM-4	3L	18278881	A	T	AAT	A>T	ATT	T>A	0.25	somaticsniper,strelka	intergenic_region	MODIFIER	CheA75a-CG5103	intergenic	intergenic	intergenic
HUM-4	3L	25152330	G	C	AGC	G>C	GCT	C>G	0.435	somaticsniper,strelka	intergenic_region	MODIFIER	Ucrh-CR40354	intergenic	intergenic	intergenic
HUM-4	3L	25499848	G	A	CGC	G>A	GCG	C>T	0.333	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
HUM-4	3L	26374446	T	G	ATA	T>G	ATA	T>G	0.345	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG42598	intergenic	intergenic	intergenic
HUM-4	3L	27294444	G	A	TGC	G>A	GCA	C>T	0.476	somaticsniper,strelka	intron_variant	MODIFIER	Dbp80	intron	Dbp80	FBgn0024804
HUM-4	3R	5835924	G	A	CGG	G>A	CCG	C>T	0.174	somaticsniper,strelka	missense_variant	MODERATE	CG1208	exon_2	CR45192	FBgn0266702
HUM-4	3R	5835929	T	A	ATA	T>A	ATA	T>A	0.182	somaticsniper,strelka	missense_variant	MODERATE	CG1208	exon_2	CR45192	FBgn0266702
HUM-4	3R	6009541	T	A	TTT	T>A	TTT	T>A	0.293	somaticsniper,strelka	upstream_gene_variant	MODIFIER	Rm62	intergenic	intergenic	intergenic
HUM-4	3R	7038369	C	T	GCT	C>T	GCT	C>T	0.568	somaticsniper,strelka	intron_variant	MODIFIER	CR44933	ncRNA	CR44933	FBgn0266238
HUM-4	3R	7191963	T	A	ATC	T>A	ATC	T>A	0.304	somaticsniper,strelka	intron_variant	MODIFIER	lap	intron	lap	FBgn0086372
HUM-4	3R	7209740	A	C	AAT	A>C	ATT	T>G	0.429	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG1288	intergenic	intergenic	intergenic
HUM-4	3R	7209768	T	A	ATA	T>A	ATA	T>A	0.581	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG1288	intergenic	intergenic	intergenic
HUM-4	3R	7209769	A	T	TAT	A>T	ATA	T>A	0.571	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG1288	intergenic	intergenic	intergenic
HUM-4	3R	7209777	G	A	TGA	G>A	TCA	C>T	0.31	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG1288	intergenic	intergenic	intergenic
HUM-4	3R	8746825	C	T	TCG	C>T	TCG	C>T	0.214	mutect2,strelka	upstream_gene_variant	MODIFIER	CG8223	intron	CG9801	FBgn0037623
HUM-4	3R	9721065	T	A	CTT	T>A	CTT	T>A	0.364	somaticsniper,strelka	missense_variant	MODERATE	hyd	exon_7	hyd	FBgn0002431
HUM-4	3R	15069046	G	C	AGC	G>C	GCT	C>G	0.28	somaticsniper,strelka	intron_variant	MODIFIER	dpr9	intron	dpr9	FBgn0038282
HUM-4	3R	15425239	A	G	GAC	A>G	GTC	T>C	0.469	somaticsniper,strelka	missense_variant	MODERATE	CG6118	exon_2	CG6118	FBgn0038339
HUM-4	3R	19543622	T	C	TTA	T>C	TTA	T>C	0.182	somaticsniper,strelka	intron_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
HUM-4	3R	19742565	G	T	AGA	G>T	TCT	C>A	0.321	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR43488	intron	GluClalpha	FBgn0024963
HUM-4	3R	21044782	A	T	AAG	A>T	CTT	T>A	0.596	somaticsniper,strelka	stop_lost	HIGH	CG12278	stop_codon	CG12278	FBgn0038847
HUM-4	3R	21920491	T	A	CTA	T>A	CTA	T>A	0.222	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG17843	intergenic	intergenic	intergenic
HUM-4	3R	23290161	G	A	AGA	G>A	TCT	C>T	0.357	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG4434	5UTR	CG4434	FBgn0039071
HUM-4	3R	24226639	C	G	ACT	C>G	ACT	C>G	0.292	somaticsniper,strelka	missense_variant	MODERATE	Spps	exon	Spps	FBgn0039169
HUM-4	3R	24420318	T	A	TTT	T>A	TTT	T>A	0.379	somaticsniper,strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
HUM-4	3R	25154287	C	A	ACA	C>A	ACA	C>A	0.308	somaticsniper,strelka	intergenic_region	MODIFIER	danr-lobo	intergenic	intergenic	intergenic
HUM-4	3R	27997135	G	A	CGA	G>A	TCG	C>T	0.211	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR46087	intergenic	intergenic	intergenic
HUM-4	3R	28089839	A	T	AAT	A>T	ATT	T>A	0.2	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG34362	3UTR	CG34362	FBgn0085391
HUM-4	3R	28089840	T	A	ATA	T>A	ATA	T>A	0.2	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CG34362	3UTR	CG34362	FBgn0085391
HUM-4	3R	28581149	G	A	TGT	G>A	ACA	C>T	0.394	somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	fkh	3UTR	fkh	FBgn0000659
HUM-4	4	196645	A	C	TAA	A>C	TTA	T>G	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG2316	intergenic	intergenic	intergenic
HUM-4	X	3749924	G	A	AGG	G>A	CCT	C>T	0.64	somaticsniper,strelka	intron_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
HUM-4	X	16950438	G	A	CGG	G>A	CCG	C>T	0.667	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG13000	intron	RhoGAP15B	FBgn0030808
HUM-7	2L	960850	G	A	AGA	G>A	TCT	C>T	0.261	varscan2,somaticsniper	downstream_gene_variant	MODIFIER	CG4341	intergenic	intergenic	intergenic
HUM-7	2L	3350467	C	T	ACC	C>T	ACC	C>T	0.391	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	E23	intron	E23	FBgn0020445
HUM-7	2L	4100599	C	T	CCA	C>T	CCA	C>T	0.353	somaticsniper,strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
HUM-7	2L	7016149	G	A	GGG	G>A	CCC	C>T	0.2	mutect2,somaticsniper,strelka	missense_variant	MODERATE	ade3	exon	ade3	FBgn0000053
HUM-7	2L	9522647	A	G	AAG	A>G	CTT	T>C	0.333	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG33298	intron	Oatp30B	FBgn0032123
HUM-7	2L	10457222	G	A	TGG	G>A	CCA	C>T	0.259	somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG5322	exon_1	LManI	FBgn0032253
HUM-7	2L	10457223	G	A	GGT	G>A	ACC	C>T	0.259	varscan2,somaticsniper,strelka	5_prime_UTR_variant	MODIFIER	CG5322	exon_1	LManI	FBgn0032253
HUM-7	2L	11814111	T	A	TTA	T>A	TTA	T>A	0.174	varscan2,somaticsniper,strelka	upstream_gene_variant	MODIFIER	CycY	intergenic	intergenic	intergenic
HUM-7	2L	12636040	T	C	TTC	T>C	TTC	T>C	0.435	mutect2,somaticsniper,strelka,freebayes	intron_variant	MODIFIER	Ref2	intron	Ref2	FBgn0032439
HUM-7	2L	14627328	C	T	GCA	C>T	GCA	C>T	0.267	somaticsniper,strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
HUM-7	2L	14627329	A	G	CAT	A>G	ATG	T>C	0.267	somaticsniper,strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
HUM-7	2L	14627331	G	A	TGC	G>A	GCA	C>T	0.267	somaticsniper,strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
HUM-7	2L	15212232	T	A	ATC	T>A	ATC	T>A	0.182	mutect2,strelka	upstream_gene_variant	MODIFIER	CG43230	intergenic	intergenic	intergenic
HUM-7	2L	19801986	C	G	GCT	C>G	GCT	C>G	0.227	varscan2,somaticsniper	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
HUM-7	2L	20128995	T	A	ATA	T>A	ATA	T>A	0.235	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG10651	intergenic	intergenic	intergenic
HUM-7	2L	21556159	T	G	ATA	T>G	ATA	T>G	0.261	somaticsniper,strelka	intergenic_region	MODIFIER	His-Psi:CR31614-Lamp1	intergenic	intergenic	intergenic
HUM-7	2L	22403016	G	C	AGG	G>C	CCT	C>G	0.162	somaticsniper,strelka	intergenic_region	MODIFIER	CG17018-RpL5	intergenic	intergenic	intergenic
HUM-7	2L	23053684	A	G	TAG	A>G	CTA	T>C	0.367	somaticsniper,strelka	intergenic_region	MODIFIER	Cht3-Spf45	intergenic	intergenic	intergenic
HUM-7	2L	23053707	C	A	CCG	C>A	CCG	C>A	0.423	somaticsniper,strelka	intergenic_region	MODIFIER	Cht3-Spf45	intergenic	intergenic	intergenic
HUM-7	2L	23053732	G	T	AGA	G>T	TCT	C>A	0.407	somaticsniper,strelka	intergenic_region	MODIFIER	Cht3-Spf45	intergenic	intergenic	intergenic
HUM-7	2R	431341	G	A	GGA	G>A	TCC	C>T	0.2	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
HUM-7	2R	431403	C	T	TCT	C>T	TCT	C>T	0.185	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
HUM-7	2R	431406	G	T	GGG	G>T	CCC	C>A	0.179	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
HUM-7	2R	1375692	T	C	ATT	T>C	ATT	T>C	0.227	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CR44043	intron	l(2)41Ab	FBgn0262123
HUM-7	2R	2589358	G	A	AGC	G>A	GCT	C>T	0.185	somaticsniper,strelka	intergenic_region	MODIFIER	MFS17-CG41378	intergenic	intergenic	intergenic
HUM-7	2R	2893463	G	A	CGT	G>A	ACG	C>T	0.632	somaticsniper,strelka	intergenic_region	MODIFIER	CG41378-Scp1	intergenic	intergenic	intergenic
HUM-7	2R	4829409	G	A	CGA	G>A	TCG	C>T	0.1	mutect2,strelka	missense_variant	MODERATE	CG14464	exon_1	CG14464	FBgn0033000
HUM-7	2R	8495445	C	T	TCC	C>T	TCC	C>T	0.136	mutect2,strelka	upstream_gene_variant	MODIFIER	mtt	intron	mtt	FBgn0050361
HUM-7	2R	8495450	G	T	TGA	G>T	TCA	C>A	0.13	mutect2,strelka	upstream_gene_variant	MODIFIER	mtt	intron	mtt	FBgn0050361
HUM-7	2R	10573152	C	A	TCT	C>A	TCT	C>A	0.172	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
HUM-7	2R	10754348	T	C	GTG	T>C	GTG	T>C	0.192	somaticsniper,strelka	intron_variant	MODIFIER	CG33144	intron	CG33144	FBgn0053144
HUM-7	2R	13073515	G	A	AGA	G>A	TCT	C>T	0.261	somaticsniper,strelka	intron_variant	MODIFIER	Drl-2	intron	Drl-2	FBgn0033791
HUM-7	2R	15642463	A	T	GAT	A>T	ATC	T>A	0.174	varscan2,somaticsniper	intron_variant	MODIFIER	CG42524	intron	CG42524	FBgn0260429
HUM-7	2R	16690793	G	T	TGA	G>T	TCA	C>A	0.294	freebayes	upstream_gene_variant	MODIFIER	CG5210	intron	CG30463	FBgn0050463
HUM-7	2R	17413256	C	T	GCC	C>T	GCC	C>T	0.2	mutect2,strelka	synonymous_variant	LOW	Prosalpha5	exon	Prosalpha5	FBgn0016697
HUM-7	2R	17587754	C	T	TCG	C>T	TCG	C>T	0.333	mutect2,somaticsniper,strelka,freebayes	missense_variant	MODERATE	RhoGAP54D	exon_5	RhoGAP54D	FBgn0034249
HUM-7	2R	19834931	A	C	GAA	A>C	TTC	T>G	0.174	somaticsniper,strelka	downstream_gene_variant	MODIFIER	Toll-7	intergenic	intergenic	intergenic
HUM-7	2R	24547737	G	A	GGG	G>A	CCC	C>T	0.353	varscan2,somaticsniper	intron_variant	MODIFIER	ITP	intron	ITP	FBgn0035023
HUM-7	3L	729950	G	T	TGC	G>T	GCA	C>A	0.3	somaticsniper,strelka	intergenic_region	MODIFIER	CR45411-CR43785	intergenic	intergenic	intergenic
HUM-7	3L	2866151	G	T	AGC	G>T	GCT	C>A	0.175	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
HUM-7	3L	3451285	A	G	TAC	A>G	GTA	T>C	0.22	mutect2,strelka	intron_variant	MODIFIER	eIF5B	intron	eIF5B	FBgn0026259
HUM-7	3L	5315094	C	G	GCT	C>G	GCT	C>G	0.211	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CR45741	intergenic	intergenic	intergenic
HUM-7	3L	5521148	G	A	TGA	G>A	TCA	C>T	0.222	somaticsniper,strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
HUM-7	3L	5521150	T	A	ATT	T>A	ATT	T>A	0.222	somaticsniper,strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
HUM-7	3L	8028241	A	T	TAT	A>T	ATA	T>A	0.222	mutect2,strelka	downstream_gene_variant	MODIFIER	tRNA:CR32370	intron	nmo	FBgn0011817
HUM-7	3L	9649487	C	A	CCA	C>A	CCA	C>A	0.156	mutect2,somaticsniper,strelka	intron_variant	MODIFIER	fry	intron	CNMaR	FBgn0053696
HUM-7	3L	11683331	T	A	GTA	T>A	GTA	T>A	0.267	mutect2,somaticsniper,strelka,freebayes	synonymous_variant	LOW	TfIIEalpha	exon_2	TfIIEalpha	FBgn0015828
HUM-7	3L	12420172	T	C	GTC	T>C	GTC	T>C	0.2	mutect2,strelka	upstream_gene_variant	MODIFIER	ArfGAP1	intergenic	intergenic	intergenic
HUM-7	3L	17118192	G	A	GGG	G>A	CCC	C>T	0.2	somaticsniper,strelka	intron_variant	MODIFIER	Rbp6	intron	Rbp6	FBgn0260943
HUM-7	3L	20454270	T	C	CTC	T>C	CTC	T>C	0.229	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG5199	snoRNA	snoRNA:Me18S-U1356b	FBgn0082948
HUM-7	3L	20454274	A	C	AAT	A>C	ATT	T>G	0.286	varscan2,strelka	upstream_gene_variant	MODIFIER	CG5199	snoRNA	snoRNA:Me18S-U1356b	FBgn0082948
HUM-7	3L	24536044	A	T	TAT	A>T	ATA	T>A	0.314	varscan2,somaticsniper,freebayes	upstream_gene_variant	MODIFIER	mRpS5	intergenic	intergenic	intergenic
HUM-7	3L	24536068	C	G	CCA	C>G	CCA	C>G	0.303	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	mRpS5	intergenic	intergenic	intergenic
HUM-7	3L	24536089	A	G	AAA	A>G	TTT	T>C	0.276	somaticsniper,strelka	upstream_gene_variant	MODIFIER	mRpS5	intergenic	intergenic	intergenic
HUM-7	3L	24536108	G	A	CGA	G>A	TCG	C>T	0.2	varscan2,somaticsniper	upstream_gene_variant	MODIFIER	mRpS5	intergenic	intergenic	intergenic
HUM-7	3L	27254043	T	A	TTA	T>A	TTA	T>A	0.55	somaticsniper,strelka	intergenic_region	MODIFIER	CR43170-RpL15	intergenic	intergenic	intergenic
HUM-7	3L	27254047	G	A	AGA	G>A	TCT	C>T	0.55	somaticsniper,strelka	intergenic_region	MODIFIER	CR43170-RpL15	intergenic	intergenic	intergenic
HUM-7	3R	5716442	C	T	GCT	C>T	GCT	C>T	0.15	mutect2,strelka	synonymous_variant	LOW	cas	exon_1	cas	FBgn0004878
HUM-7	3R	11661878	A	G	AAA	A>G	TTT	T>C	0.25	somaticsniper,strelka	intron_variant	MODIFIER	CG42327	intron	CG42327	FBgn0259227
HUM-7	3R	13331731	C	G	CCT	C>G	CCT	C>G	0.6	somaticsniper,strelka	intron_variant	MODIFIER	PK2-R2	intron	PK2-R2	FBgn0038139
HUM-7	3R	18497949	T	G	TTC	T>G	TTC	T>G	0.304	varscan2,somaticsniper	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
HUM-7	3R	21784595	C	T	GCC	C>T	GCC	C>T	0.194	mutect2,varscan2,somaticsniper,strelka	3_prime_UTR_variant	MODIFIER	CASK	exon_1	CRG	FBgn0266181
HUM-7	3R	23445655	A	T	AAT	A>T	ATT	T>A	0.542	mutect2,varscan2,somaticsniper,strelka	intron_variant	MODIFIER	CG4374	intron	CG4374	FBgn0039078
HUM-7	3R	24288281	G	C	CGA	G>C	TCG	C>G	0.235	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG6356	3UTR	CG6356	FBgn0039178
HUM-7	3R	24484292	A	C	TAT	A>C	ATA	T>G	0.211	somaticsniper,strelka	upstream_gene_variant	MODIFIER	nAChRalpha2	intergenic	intergenic	intergenic
HUM-7	3R	24484293	T	G	ATT	T>G	ATT	T>G	0.222	somaticsniper,strelka	upstream_gene_variant	MODIFIER	nAChRalpha2	intergenic	intergenic	intergenic
HUM-7	3R	26069677	T	A	CTG	T>A	CTG	T>A	0.188	mutect2,strelka	downstream_gene_variant	MODIFIER	CR44950	intergenic	intergenic	intergenic
HUM-7	3R	27707208	A	T	GAA	A>T	TTC	T>A	0.182	mutect2,varscan2	5_prime_UTR_variant	MODIFIER	CG12877	5UTR	CG12877	FBgn0039544
HUM-7	3R	30233997	T	C	CTG	T>C	CTG	T>C	0.542	somaticsniper,strelka	downstream_gene_variant	MODIFIER	CG43448	intergenic	intergenic	intergenic
HUM-7	3R	30577125	C	A	CCC	C>A	CCC	C>A	0.167	somaticsniper,strelka	upstream_gene_variant	MODIFIER	CG9702	intron	tmod	FBgn0082582
HUM-7	X	17810196	A	T	AAC	A>T	GTT	T>A	0.375	somaticsniper,strelka,freebayes	intron_variant	MODIFIER	OdsH	intron	OdsH	FBgn0026058
HUM-7	X	21015879	A	G	AAC	A>G	GTT	T>C	0.167	mutect2,strelka	intergenic_region	MODIFIER	CG11666-r-cup	intergenic	intergenic	intergenic
HUM-7	X	22764824	G	A	GGC	G>A	GCC	C>T	1.0	somaticsniper,strelka,freebayes	intron_variant	MODIFIER	CR44997	exon_2	CR44109	FBgn0264940
