2	bp1	A373R11	somatic_tumour	2L	200100	spen	intron	2L	203725	intergenic	intergenic	DEL	3.6	0.46	imprecise	0	-
2	bp2	A373R11	somatic_tumour	2L	203725	intergenic	intergenic	2L	200100	spen	intron	DEL	3.6	0.46	imprecise	0	-
5	bp1	A373R11	somatic_tumour	2L	7016550	ade3	exon_6	2L	7018725	ade3	exon_3	DUP	2.2	0.47	imprecise	0	-
5	bp2	A373R11	somatic_tumour	2L	7018725	ade3	exon_3	2L	7016550	ade3	exon_6	DUP	2.2	0.47	imprecise	0	-
13	bp1	A373R11	somatic_tumour	2R	6153193	tRNA:Asn-GTT-1-2	tRNA	2R	6153589	EcR	intron	DEL	0.4	0.05	precise	GCCTCCGT	Alt-EJ
13	bp2	A373R11	somatic_tumour	2R	6153589	EcR	intron	2R	6153193	tRNA:Asn-GTT-1-2	tRNA	DEL	0.4	0.05	precise	GCCTCCGT	Alt-EJ
14	bp1	A373R11	somatic_tumour	2R	7930775	CG30381	exon_2	2R	7936575	drosha	exon	DUP	5.8	0.39	imprecise	0	-
14	bp2	A373R11	somatic_tumour	2R	7936575	drosha	exon	2R	7930775	CG30381	exon_2	DUP	5.8	0.39	imprecise	0	-
16	bp1	A373R11	somatic_tumour	2R	13505400	mars	exon	2R	13505470	mars	exon	BND	0.1	0.04	precise	CGCAA	Alt-EJ
16	bp2	A373R11	somatic_tumour	2R	13505470	mars	exon	2R	13505400	mars	exon	BND	0.1	0.04	precise	CGCAA	Alt-EJ
18	bp1	A373R11	somatic_tumour	2R	19515550	intergenic	intergenic	2R	19535125	sm	intron	DEL	19.6	0.31	imprecise	0	-
18	bp2	A373R11	somatic_tumour	2R	19535125	sm	intron	2R	19515550	intergenic	intergenic	DEL	19.6	0.31	imprecise	0	-
24	bp1	A373R11	somatic_tumour	3L	8587625	CG43078	5UTR	3L	8597050	CG43078	exon	DUP	9.4	0.36	imprecise	0	-
24	bp2	A373R11	somatic_tumour	3L	8597050	CG43078	exon	3L	8587625	CG43078	5UTR	DUP	9.4	0.36	imprecise	0	-
25	bp1	A373R11	somatic_tumour	3L	19301675	pip	exon	3L	19311825	pip	exon_4	DUP	10.2	0.29	imprecise	0	-
25	bp2	A373R11	somatic_tumour	3L	19311825	pip	exon_4	3L	19301675	pip	exon	DUP	10.2	0.29	imprecise	0	-
26	bp1	A373R11	somatic_tumour	3L	21427375	barc	intron	3L	21433900	Aef1	exon_1	DUP	6.5	0.42	imprecise	0	-
26	bp2	A373R11	somatic_tumour	3L	21433900	Aef1	exon_1	3L	21427375	barc	intron	DUP	6.5	0.42	imprecise	0	-
27	bp1	A373R11	somatic_tumour	3R	3171150	Pzl	intron	3R	3193625	Pzl	intron	DUP	22.5	0.45	imprecise	0	-
27	bp2	A373R11	somatic_tumour	3R	3193625	Pzl	intron	3R	3171150	Pzl	intron	DUP	22.5	0.45	imprecise	0	-
28	bp1	A373R11	somatic_tumour	3R	5733300	intergenic	intergenic	3R	5795650	CG10979	exon_3	DUP	62.4	0.2	imprecise	0	-
28	bp2	A373R11	somatic_tumour	3R	5795650	CG10979	exon_3	3R	5733300	intergenic	intergenic	DUP	62.4	0.2	imprecise	0	-
29	bp1	A373R11	somatic_tumour	3R	18283050	CG14312	3UTR	3R	18292475	l(3)05822	intron	DUP	9.4	0.38	imprecise	0	-
29	bp2	A373R11	somatic_tumour	3R	18292475	l(3)05822	intron	3R	18283050	CG14312	3UTR	DUP	9.4	0.38	imprecise	0	-
37	bp1	A373R11	somatic_tumour	X	3146220	N	intron	X	3148372	N	intron	DEL	2.2	0.92	precise	0	-
37	bp2	A373R11	somatic_tumour	X	3148372	N	intron	X	3146220	N	intron	DEL	2.2	0.92	precise	0	-
38	bp1	A373R11	somatic_tumour	X	4954265	Ptp4E	exon	X	4954391	Ptp4E	exon	BND	0.1	0.13	precise	0	-
38	bp2	A373R11	somatic_tumour	X	4954391	Ptp4E	exon	X	4954265	Ptp4E	exon	BND	0.1	0.13	precise	0	-
39	bp1	A373R11	somatic_tumour	X	9302146	lz	exon	X	9302259	lz	exon	BND	0.1	0.16	precise	GCTGCAGCTGGCC	Alt-EJ
39	bp2	A373R11	somatic_tumour	X	9302259	lz	exon	X	9302146	lz	exon	BND	0.1	0.16	precise	GCTGCAGCTGGCC	Alt-EJ
40	bp1	A373R11	somatic_tumour	X	10498521	spri	exon_6	X	10498657	spri	exon_6	BND	0.1	0.04	precise	GTGGGCGGCA	Alt-EJ
40	bp2	A373R11	somatic_tumour	X	10498657	spri	exon_6	X	10498521	spri	exon_6	BND	0.1	0.04	precise	GTGGGCGGCA	Alt-EJ
41	bp1	A373R11	somatic_tumour	X	12265734	Ten-a	intron	3R	29465597	Ptp99A	intron	TRA	17199.9	0.23	precise	0	-
41	bp2	A373R11	somatic_tumour	3R	29465597	Ptp99A	intron	X	12265734	Ten-a	intron	TRA	17199.9	0.23	precise	0	-
43	bp1	A373R11	somatic_tumour	X	17769397	unc-4	exon_1	X	17769504	unc-4	exon_1	BND	0.1	0.09	precise	0	-
43	bp2	A373R11	somatic_tumour	X	17769504	unc-4	exon_1	X	17769397	unc-4	exon_1	BND	0.1	0.09	precise	0	-
44	bp1	A373R11	somatic_tumour	Y	654675	kl-2	exon_6	Y	661200	kl-2	exon_8	DUP	6.5	0.97	imprecise	0	-
44	bp2	A373R11	somatic_tumour	Y	661200	kl-2	exon_8	Y	654675	kl-2	exon_6	DUP	6.5	0.97	imprecise	0	-
2	bp1	A373R13	somatic_tumour	2L	553722	intergenic	intergenic	2R	10934808	intergenic	intergenic	TRA	10381.1	0.16	precise	0	NHEJ
2	bp2	A373R13	somatic_tumour	2R	10934808	intergenic	intergenic	2L	553722	intergenic	intergenic	TRA	10381.1	0.16	precise	0	NHEJ
12	bp1	A373R13	somatic_tumour	2L	3115500	toc	intron	3R	13703238	Adgf-D	exon	TRA	10587.7	0.07	precise	0	NHEJ
12	bp2	A373R13	somatic_tumour	3R	13703238	Adgf-D	exon	2L	3115500	toc	intron	TRA	10587.7	0.07	precise	0	NHEJ
14	bp1	A373R13	somatic_tumour	2L	3771067	intergenic	intergenic	3L	24121078	Snap25	intron	TRA	20350.0	0.04	precise	0	-
14	bp2	A373R13	somatic_tumour	3L	24121078	Snap25	intron	2L	3771067	intergenic	intergenic	TRA	20350.0	0.04	precise	0	-
21	bp1	A373R13	somatic_tumour	2L	5313800	CG14024	exon_2	X	12654753	CkIalpha	exon_1	TRA	7341.0	0.06	precise	GGAAAAGGAAGGC	Alt-EJ
21	bp2	A373R13	somatic_tumour	X	12654753	CkIalpha	exon_1	2L	5313800	CG14024	exon_2	TRA	7341.0	0.06	precise	GGAAAAGGAAGGC	Alt-EJ
29	bp1	A373R13	somatic_tumour	2L	6068689	intergenic	intergenic	Tomelloso	31531	intergenic	intergenic	TRA	6037.2	0.09	precise	AT	Alt-EJ
29	bp2	A373R13	somatic_tumour	Tomelloso	31531	intergenic	intergenic	2L	6068689	intergenic	intergenic	TRA	6037.2	0.09	precise	AT	Alt-EJ
29	bp1	A373R13	somatic_tumour	2L	6110188	stai	exon_3	Tomelloso	35464	intergenic	intergenic	TRA	6074.7	0.11	precise	T	Alt-EJ
29	bp2	A373R13	somatic_tumour	Tomelloso	35464	intergenic	intergenic	2L	6110188	stai	exon_3	TRA	6074.7	0.11	precise	T	Alt-EJ
35	bp1	A373R13	somatic_tumour	2L	7747929	intergenic	intergenic	3R	27519078	intergenic	intergenic	TRA	19771.1	0.06	precise	GTTC	Alt-EJ
35	bp2	A373R13	somatic_tumour	3R	27519078	intergenic	intergenic	2L	7747929	intergenic	intergenic	TRA	19771.1	0.06	precise	GTTC	Alt-EJ
47	bp1	A373R13	somatic_tumour	2L	10991843	CG16833	exon_4	X	19688243	CG14227	exon	TRA	8696.4	0.05	precise	0	FoSTeS
47	bp2	A373R13	somatic_tumour	X	19688243	CG14227	exon	2L	10991843	CG16833	exon_4	TRA	8696.4	0.05	precise	0	FoSTeS
71	bp1	A373R13	somatic_tumour	2L	19788773	CdGAPr	intron	2R	18156855	lolal	exon_1	TRA	1631.9	0.09	precise	0	-
71	bp2	A373R13	somatic_tumour	2R	18156855	lolal	exon_1	2L	19788773	CdGAPr	intron	TRA	1631.9	0.09	precise	0	-
74	bp1	A373R13	somatic_tumour	2L	21390362	nrv3	3UTR	2L	21393869	intergenic	intergenic	DUP	3.5	0.44	imprecise	0	-
74	bp2	A373R13	somatic_tumour	2L	21393869	intergenic	intergenic	2L	21390362	nrv3	3UTR	DUP	3.5	0.44	imprecise	0	-
79	bp1	A373R13	somatic_tumour	2R	24570562	Fcp1	exon_3	3R	4746260	tacc	5UTR	TRA	19824.3	0.06	precise	0	-
79	bp2	A373R13	somatic_tumour	3R	4746260	tacc	5UTR	2R	24570562	Fcp1	exon_3	TRA	19824.3	0.06	precise	0	-
113	bp1	A373R13	somatic_tumour	2R	16673460	CG30463	3UTR	3R	18114304	sr	intron	TRA	1440.8	0.05	precise	0	-
113	bp2	A373R13	somatic_tumour	3R	18114304	sr	intron	2R	16673460	CG30463	3UTR	TRA	1440.8	0.05	precise	0	-
137	bp1	A373R13	somatic_tumour	2R	24191931	ocm	exon_5	3L	14203584	CG32141	exon_1	TRA	9988.3	0.04	precise	0	-
137	bp2	A373R13	somatic_tumour	3L	14203584	CG32141	exon_1	2R	24191931	ocm	exon_5	TRA	9988.3	0.04	precise	0	-
140	bp1	A373R13	somatic_tumour	2R	24861392	intergenic	intergenic	2L	17928964	intergenic	intergenic	TRA	6932.4	0.1	precise	0	-
140	bp2	A373R13	somatic_tumour	2L	17928964	intergenic	intergenic	2R	24861392	intergenic	intergenic	TRA	6932.4	0.1	precise	0	-
143	bp1	A373R13	somatic_tumour	3L	72734	CR43988	ncRNA	3L	76450	intergenic	intergenic	BND	3.7	0.04	precise	0	-
143	bp2	A373R13	somatic_tumour	3L	76450	intergenic	intergenic	3L	72734	CR43988	ncRNA	BND	3.7	0.04	precise	0	-
149	bp1	A373R13	somatic_tumour	3L	2245015	CG32301	intron	3R	28316834	intergenic	intergenic	TRA	26071.8	0.06	precise	0	-
149	bp2	A373R13	somatic_tumour	3R	28316834	intergenic	intergenic	3L	2245015	CG32301	intron	TRA	26071.8	0.06	precise	0	-
153	bp1	A373R13	somatic_tumour	3L	4065761	wit	exon	3L	9407320	CG4022	3UTR	BND	5341.6	0.03	precise	0	-
153	bp2	A373R13	somatic_tumour	3L	9407320	CG4022	3UTR	3L	4065761	wit	exon	BND	5341.6	0.03	precise	0	-
159	bp1	A373R13	somatic_tumour	3L	4982252	Con	intron	3L	19898802	Su(Tpl)	intron	BND	14916.5	0.04	precise	0	-
159	bp2	A373R13	somatic_tumour	3L	19898802	Su(Tpl)	intron	3L	4982252	Con	intron	BND	14916.5	0.04	precise	0	-
178	bp1	A373R13	somatic_tumour	3L	10506972	Rbfox1	intron	3L	10513986	Rbfox1	intron	DUP	7.0	0.38	imprecise	0	-
178	bp2	A373R13	somatic_tumour	3L	10513986	Rbfox1	intron	3L	10506972	Rbfox1	intron	DUP	7.0	0.38	imprecise	0	-
179	bp1	A373R13	somatic_tumour	3L	10815481	CG42831	3UTR	3L	19549419	Ltn1	exon_5	BND	8733.9	0.06	precise	0	-
179	bp2	A373R13	somatic_tumour	3L	19549419	Ltn1	exon_5	3L	10815481	CG42831	3UTR	BND	8733.9	0.06	precise	0	-
234	bp1	A373R13	somatic_tumour	3R	7943071	dsx	intron	2L	18464955	let-7-C	ncRNA	TRA	10521.9	0.09	precise	0	-
234	bp2	A373R13	somatic_tumour	2L	18464955	let-7-C	ncRNA	3R	7943071	dsx	intron	TRA	10521.9	0.09	precise	0	-
235	bp1	A373R13	somatic_tumour	3R	8015021	Pbp95	intron	3R	25233379	intergenic	intergenic	BND	17218.4	0.03	precise	0	-
235	bp2	A373R13	somatic_tumour	3R	25233379	intergenic	intergenic	3R	8015021	Pbp95	intron	BND	17218.4	0.03	precise	0	-
236	bp1	A373R13	somatic_tumour	3R	8222686	intergenic	intergenic	3R	8519520	CG11737	intron	BND	296.8	0.05	precise	0	NHEJ
236	bp2	A373R13	somatic_tumour	3R	8519520	CG11737	intron	3R	8222686	intergenic	intergenic	BND	296.8	0.05	precise	0	NHEJ
251	bp1	A373R13	somatic_tumour	3R	11840838	CG6959	intron	3R	11861600	CG6959	intron	COMPLEX_BND	20.8	0.18	precise	0	-
251	bp2	A373R13	somatic_tumour	3R	11861600	CG6959	intron	3R	11840838	CG6959	intron	COMPLEX_BND	20.8	0.18	precise	0	-
255	bp1	A373R13	somatic_tumour	3R	12534177	Octbeta3R	intron	3R	19941125	Hs6st	intron	BND	7406.9	0.13	precise	0	-
255	bp2	A373R13	somatic_tumour	3R	19941125	Hs6st	intron	3R	12534177	Octbeta3R	intron	BND	7406.9	0.13	precise	0	-
274	bp1	A373R13	somatic_tumour	3R	17743124	TyrRII	intron	3R	30214752	intergenic	intergenic	BND	12471.6	0.03	precise	0	-
274	bp2	A373R13	somatic_tumour	3R	30214752	intergenic	intergenic	3R	17743124	TyrRII	intron	BND	12471.6	0.03	precise	0	-
280	bp1	A373R13	somatic_tumour	3R	20476344	Gfrl	intron	3R	27592686	CG5639	intron	BND	7116.3	0.05	precise	0	-
280	bp2	A373R13	somatic_tumour	3R	27592686	CG5639	intron	3R	20476344	Gfrl	intron	BND	7116.3	0.05	precise	0	-
296	bp1	A373R13	somatic_tumour	3R	27135525	CG6051	intron	3R	31630504	kek6	intron	BND	4495.0	0.03	precise	0	-
296	bp2	A373R13	somatic_tumour	3R	31630504	kek6	intron	3R	27135525	CG6051	intron	BND	4495.0	0.03	precise	0	-
297	bp1	A373R13	somatic_tumour	3R	27240880	DNApol-alpha73	exon	X	18343349	CG6123	intron	TRA	8897.5	0.06	precise	0	-
297	bp2	A373R13	somatic_tumour	X	18343349	CG6123	intron	3R	27240880	DNApol-alpha73	exon	TRA	8897.5	0.06	precise	0	-
310	bp1	A373R13	somatic_tumour	3R	31994361	heph	intron	3R	32079331	intergenic	intergenic	DEL	85.0	0.35	imprecise	0	-
310	bp2	A373R13	somatic_tumour	3R	32079331	intergenic	intergenic	3R	31994361	heph	intron	DEL	85.0	0.35	imprecise	0	-
317	bp1	A373R13	somatic_tumour	Tomelloso	6209	intergenic	intergenic	2R	11742375	intergenic	intergenic	TRA	11736.2	0.13	precise	0	-
317	bp2	A373R13	somatic_tumour	2R	11742375	intergenic	intergenic	Tomelloso	6209	intergenic	intergenic	TRA	11736.2	0.13	precise	0	-
320	bp1	A373R13	somatic_tumour	Tomelloso	76121	intergenic	intergenic	2L	14257152	intergenic	intergenic	TRA	14181.0	0.08	precise	0	-
320	bp2	A373R13	somatic_tumour	2L	14257152	intergenic	intergenic	Tomelloso	76121	intergenic	intergenic	TRA	14181.0	0.08	precise	0	-
321	bp1	A373R13	somatic_tumour	Tomelloso	95382	intergenic	intergenic	X	7378327	CheA7a	exon_1	TRA	7282.9	0.14	precise	0	-
321	bp2	A373R13	somatic_tumour	X	7378327	CheA7a	exon_1	Tomelloso	95382	intergenic	intergenic	TRA	7282.9	0.14	precise	0	-
324	bp1	A373R13	somatic_tumour	X	3057935	kirre	intron	X	3299323	dnc	intron	COMPLEX_BND	241.4	0.38	precise	0	-
324	bp2	A373R13	somatic_tumour	X	3299323	dnc	intron	X	3057935	kirre	intron	COMPLEX_BND	241.4	0.38	precise	0	-
329	bp1	A373R13	somatic_tumour	X	4612489	intergenic	intergenic	X	4612609	intergenic	intergenic	TANDUP	0.1	0.2	precise	0	-
329	bp2	A373R13	somatic_tumour	X	4612609	intergenic	intergenic	X	4612489	intergenic	intergenic	TANDUP	0.1	0.2	precise	0	-
331	bp1	A373R13	somatic_tumour	X	5718128	intergenic	intergenic	3L	13369579	intergenic	intergenic	TRA	7651.5	0.06	precise	0	-
331	bp2	A373R13	somatic_tumour	3L	13369579	intergenic	intergenic	X	5718128	intergenic	intergenic	TRA	7651.5	0.06	precise	0	-
12	bp1	A373R1	somatic_tumour	2L	65533	intergenic	intergenic	2R	21906958	Fili	intron	TRA	21841.4	0.1	precise	0	-
12	bp2	A373R1	somatic_tumour	2R	21906958	Fili	intron	2L	65533	intergenic	intergenic	TRA	21841.4	0.1	precise	0	-
21	bp1	A373R1	somatic_tumour	2L	174862	spen	intron	3L	4661861	axo	intron	TRA	4487.0	0.14	precise	0	NHEJ
21	bp2	A373R1	somatic_tumour	3L	4661861	axo	intron	2L	174862	spen	intron	TRA	4487.0	0.14	precise	0	NHEJ
30	bp1	A373R1	somatic_tumour	2L	483252	ush	intron	3R	30098205	sima	intron	TRA	29615.0	0.09	precise	0	-
30	bp2	A373R1	somatic_tumour	3R	30098205	sima	intron	2L	483252	ush	intron	TRA	29615.0	0.09	precise	0	-
33	bp1	A373R1	somatic_tumour	2L	603468	CG13689	3UTR	3L	302053	RhoGEF3	exon_4	TRA	301.4	0.12	precise	T	Alt-EJ
33	bp2	A373R1	somatic_tumour	3L	302053	RhoGEF3	exon_4	2L	603468	CG13689	3UTR	TRA	301.4	0.12	precise	T	Alt-EJ
35	bp1	A373R1	somatic_tumour	2L	666036	ds	intron	3R	7433241	intergenic	intergenic	TRA	6767.2	0.11	precise	0	-
35	bp2	A373R1	somatic_tumour	3R	7433241	intergenic	intergenic	2L	666036	ds	intron	TRA	6767.2	0.11	precise	0	-
72	bp1	A373R1	somatic_tumour	2L	1621944	CR44603	exon_1	3R	6345586	SmD2	exon	TRA	4723.6	0.1	precise	TGCCGC	Alt-EJ
72	bp2	A373R1	somatic_tumour	3R	6345586	SmD2	exon	2L	1621944	CR44603	exon_1	TRA	4723.6	0.1	precise	TGCCGC	Alt-EJ
81	bp1	A373R1	somatic_tumour	2L	2029429	CG4238	intron	3L	7940911	intergenic	intergenic	TRA	5911.5	0.1	precise	0	-
81	bp2	A373R1	somatic_tumour	3L	7940911	intergenic	intergenic	2L	2029429	CG4238	intron	TRA	5911.5	0.1	precise	0	-
85	bp1	A373R1	somatic_tumour	2L	2065379	dpr3	intron	2L	19693188	CG46244	intron	BND	17627.8	0.08	precise	0	-
85	bp2	A373R1	somatic_tumour	2L	19693188	CG46244	intron	2L	2065379	dpr3	intron	BND	17627.8	0.08	precise	0	-
88	bp1	A373R1	somatic_tumour	2L	2208673	CG33124	exon_2	3L	17103423	Rbp6	intron	TRA	14894.8	0.08	precise	CATCT	Alt-EJ
88	bp2	A373R1	somatic_tumour	3L	17103423	Rbp6	intron	2L	2208673	CG33124	exon_2	TRA	14894.8	0.08	precise	CATCT	Alt-EJ
90	bp1	A373R1	somatic_tumour	2L	2241903	intergenic	intergenic	2L	11365061	salr	intron	BND	9123.2	0.11	precise	0	-
90	bp2	A373R1	somatic_tumour	2L	11365061	salr	intron	2L	2241903	intergenic	intergenic	BND	9123.2	0.11	precise	0	-
95	bp1	A373R1	somatic_tumour	2L	2371725	intergenic	intergenic	2R	22139254	CG11269	exon	TRA	19767.5	0.09	precise	0	-
95	bp2	A373R1	somatic_tumour	2R	22139254	CG11269	exon	2L	2371725	intergenic	intergenic	TRA	19767.5	0.09	precise	0	-
103	bp1	A373R1	somatic_tumour	2L	2691227	CG31690	intron	3L	19049563	intergenic	intergenic	TRA	16358.3	0.11	precise	0	-
103	bp2	A373R1	somatic_tumour	3L	19049563	intergenic	intergenic	2L	2691227	CG31690	intron	TRA	16358.3	0.11	precise	0	-
106	bp1	A373R1	somatic_tumour	2L	2716106	CG31690	intron	2R	24871228	Atf-2	exon_1	TRA	22155.1	0.14	precise	TAAGCTGCTGT	Alt-EJ
106	bp2	A373R1	somatic_tumour	2R	24871228	Atf-2	exon_1	2L	2716106	CG31690	intron	TRA	22155.1	0.14	precise	TAAGCTGCTGT	Alt-EJ
110	bp1	A373R1	somatic_tumour	2L	2766399	aph-1	exon_1	3R	15255243	CG42404	exon_4	TRA	12488.8	0.15	precise	0	-
110	bp2	A373R1	somatic_tumour	3R	15255243	CG42404	exon_4	2L	2766399	aph-1	exon_1	TRA	12488.8	0.15	precise	0	-
112	bp1	A373R1	somatic_tumour	2L	2787990	Syt1	intron	2L	2797940	CR43821	ncRNA	DUP	9.9	0.43	imprecise	0	-
112	bp2	A373R1	somatic_tumour	2L	2797940	CR43821	ncRNA	2L	2787990	Syt1	intron	DUP	9.9	0.43	imprecise	0	-
115	bp1	A373R1	somatic_tumour	2L	2837516	CG3119	exon_1	3R	23683953	CG16710	3UTR	TRA	20846.4	0.15	precise	GCG	Alt-EJ
115	bp2	A373R1	somatic_tumour	3R	23683953	CG16710	3UTR	2L	2837516	CG3119	exon_1	TRA	20846.4	0.15	precise	GCG	Alt-EJ
129	bp1	A373R1	somatic_tumour	2L	3145342	ND-B14.5B	exon_2	2R	7504368	didum	exon_9	TRA	4359.0	0.13	precise	0	-
129	bp2	A373R1	somatic_tumour	2R	7504368	didum	exon_9	2L	3145342	ND-B14.5B	exon_2	TRA	4359.0	0.13	precise	0	-
131	bp1	A373R1	somatic_tumour	2R	16697447	CG30463	intron	3L	1885675	Tmhs	exon_1	TRA	14811.8	0.16	precise	0	-
131	bp2	A373R1	somatic_tumour	3L	1885675	Tmhs	exon_1	2R	16697447	CG30463	intron	TRA	14811.8	0.16	precise	0	-
133	bp1	A373R1	somatic_tumour	2L	3225319	intergenic	intergenic	X	4453399	bi	intron	TRA	1228.1	0.19	precise	CC	Alt-EJ
133	bp2	A373R1	somatic_tumour	X	4453399	bi	intron	2L	3225319	intergenic	intergenic	TRA	1228.1	0.19	precise	CC	Alt-EJ
140	bp1	A373R1	somatic_tumour	3L	3850501	Awh	intron	2L	17992512	intergenic	intergenic	TRA	14142.0	0.25	precise	0	-
140	bp2	A373R1	somatic_tumour	2L	17992512	intergenic	intergenic	3L	3850501	Awh	intron	TRA	14142.0	0.25	precise	0	-
142	bp1	A373R1	somatic_tumour	2L	3399658	intergenic	intergenic	3L	3296613	CG12009	exon	TRA	103.0	0.09	precise	TTGACTGGC	Alt-EJ
142	bp2	A373R1	somatic_tumour	3L	3296613	CG12009	exon	2L	3399658	intergenic	intergenic	TRA	103.0	0.09	precise	TTGACTGGC	Alt-EJ
156	bp1	A373R1	somatic_tumour	2L	3798316	bark	exon_5	2L	21842984	intergenic	intergenic	BND	18044.7	0.08	precise	0	-
156	bp2	A373R1	somatic_tumour	2L	21842984	intergenic	intergenic	2L	3798316	bark	exon_5	BND	18044.7	0.08	precise	0	-
165	bp1	A373R1	somatic_tumour	2L	4004703	intergenic	intergenic	3L	16251568	CG13055	exon	TRA	12246.9	0.1	precise	0	-
165	bp2	A373R1	somatic_tumour	3L	16251568	CG13055	exon	2L	4004703	intergenic	intergenic	TRA	12246.9	0.1	precise	0	-
182	bp1	A373R1	somatic_tumour	2L	4687951	Elba3	exon	3L	23096651	intergenic	intergenic	TRA	18408.7	0.13	precise	AGCA	Alt-EJ
182	bp2	A373R1	somatic_tumour	3L	23096651	intergenic	intergenic	2L	4687951	Elba3	exon	TRA	18408.7	0.13	precise	AGCA	Alt-EJ
190	bp1	A373R1	somatic_tumour	2L	4800841	Clect27	intron	2R	13316186	intergenic	intergenic	TRA	8515.3	0.08	precise	0	-
190	bp2	A373R1	somatic_tumour	2R	13316186	intergenic	intergenic	2L	4800841	Clect27	intron	TRA	8515.3	0.08	precise	0	-
199	bp1	A373R1	somatic_tumour	2L	4928549	hoe1	intron	3R	22460521	CG34376	3UTR	TRA	17532.0	0.1	precise	0	-
199	bp2	A373R1	somatic_tumour	3R	22460521	CG34376	3UTR	2L	4928549	hoe1	intron	TRA	17532.0	0.1	precise	0	-
201	bp1	A373R1	somatic_tumour	2L	4952655	Jon25Bii	exon	2L	12989484	intergenic	intergenic	TANDUP	8036.8	0.2	precise	0	-
201	bp2	A373R1	somatic_tumour	2L	12989484	intergenic	intergenic	2L	4952655	Jon25Bii	exon	TANDUP	8036.8	0.2	precise	0	-
204	bp1	A373R1	somatic_tumour	X	14753155	intergenic	intergenic	3R	17275527	intergenic	intergenic	TRA	2522.4	0.11	precise	0	-
204	bp2	A373R1	somatic_tumour	3R	17275527	intergenic	intergenic	X	14753155	intergenic	intergenic	TRA	2522.4	0.11	precise	0	-
208	bp1	A373R1	somatic_tumour	2L	5077640	pgant5	exon_6	3R	27530506	CG12885	intron	TRA	22452.9	0.13	precise	0	FoSTeS
208	bp2	A373R1	somatic_tumour	3R	27530506	CG12885	intron	2L	5077640	pgant5	exon_6	TRA	22452.9	0.13	precise	0	FoSTeS
212	bp1	A373R1	somatic_tumour	2L	5185983	Msp300	exon	3R	19218961	vib	intron	TRA	14033.0	0.12	precise	0	-
212	bp2	A373R1	somatic_tumour	3R	19218961	vib	intron	2L	5185983	Msp300	exon	TRA	14033.0	0.12	precise	0	-
216	bp1	A373R1	somatic_tumour	2L	5246840	tkv	intron	2R	18197358	intergenic	intergenic	TRA	12950.5	0.15	precise	0	-
216	bp2	A373R1	somatic_tumour	2R	18197358	intergenic	intergenic	2L	5246840	tkv	intron	TRA	12950.5	0.15	precise	0	-
219	bp1	A373R1	somatic_tumour	2L	5311551	CG14024	3UTR	3L	21953089	intergenic	intergenic	TRA	16641.5	0.19	precise	0	NHEJ
219	bp2	A373R1	somatic_tumour	3L	21953089	intergenic	intergenic	2L	5311551	CG14024	3UTR	TRA	16641.5	0.19	precise	0	NHEJ
223	bp1	A373R1	somatic_tumour	2L	5454015	intergenic	intergenic	2L	19145783	brat	intron	BND	13691.8	0.07	precise	0	-
223	bp2	A373R1	somatic_tumour	2L	19145783	brat	intron	2L	5454015	intergenic	intergenic	BND	13691.8	0.07	precise	0	-
226	bp1	A373R1	somatic_tumour	2L	5529404	CG31915	exon	X	17596447	CG12991	intron	TRA	12067.0	0.13	precise	0	-
226	bp2	A373R1	somatic_tumour	X	17596447	CG12991	intron	2L	5529404	CG31915	exon	TRA	12067.0	0.13	precise	0	-
237	bp1	A373R1	somatic_tumour	2L	5777785	CG9171	intron	3R	11302926	CR31386	ncRNA	TRA	5525.1	0.1	precise	0	-
237	bp2	A373R1	somatic_tumour	3R	11302926	CR31386	ncRNA	2L	5777785	CG9171	intron	TRA	5525.1	0.1	precise	0	-
243	bp1	A373R1	somatic_tumour	2L	5923419	CG9016	exon	2L	5923721	intergenic	intergenic	BND	0.3	0.14	precise	0	NHEJ
243	bp2	A373R1	somatic_tumour	2L	5923721	intergenic	intergenic	2L	5923419	CG9016	exon	BND	0.3	0.14	precise	0	NHEJ
244	bp1	A373R1	somatic_tumour	3L	18201995	CG7320	exon	2L	5982759	eIF-4a	5UTR	TRA	12219.2	0.09	precise	0	-
244	bp2	A373R1	somatic_tumour	2L	5982759	eIF-4a	5UTR	3L	18201995	CG7320	exon	TRA	12219.2	0.09	precise	0	-
253	bp1	A373R1	somatic_tumour	2L	6162141	intergenic	intergenic	3L	11842292	intergenic	intergenic	TRA	5680.2	0.19	precise	0	-
253	bp2	A373R1	somatic_tumour	3L	11842292	intergenic	intergenic	2L	6162141	intergenic	intergenic	TRA	5680.2	0.19	precise	0	-
258	bp1	A373R1	somatic_tumour	2L	6259554	Ddr	intron	2L	17917524	intergenic	intergenic	BND	11658.0	0.08	precise	0	-
258	bp2	A373R1	somatic_tumour	2L	17917524	intergenic	intergenic	2L	6259554	Ddr	intron	BND	11658.0	0.08	precise	0	-
259	bp1	A373R1	somatic_tumour	2L	6273754	Ddr	intron	2L	12455352	intergenic	intergenic	BND	6181.6	0.26	precise	0	-
259	bp2	A373R1	somatic_tumour	2L	12455352	intergenic	intergenic	2L	6273754	Ddr	intron	BND	6181.6	0.26	precise	0	-
266	bp1	A373R1	somatic_tumour	2L	6469039	mmy	exon	X	18063310	intergenic	intergenic	TRA	11594.3	0.14	precise	CGGGC	Alt-EJ
266	bp2	A373R1	somatic_tumour	X	18063310	intergenic	intergenic	2L	6469039	mmy	exon	TRA	11594.3	0.14	precise	CGGGC	Alt-EJ
269	bp1	A373R1	somatic_tumour	2L	6567403	intergenic	intergenic	3R	19234202	unc79	exon_22	TRA	12666.8	0.11	precise	GTG	Alt-EJ
269	bp2	A373R1	somatic_tumour	3R	19234202	unc79	exon_22	2L	6567403	intergenic	intergenic	TRA	12666.8	0.11	precise	GTG	Alt-EJ
270	bp1	A373R1	somatic_tumour	2L	6582343	CG11319	intron	3R	15642669	intergenic	intergenic	TRA	9060.3	0.08	precise	0	-
270	bp2	A373R1	somatic_tumour	3R	15642669	intergenic	intergenic	2L	6582343	CG11319	intron	TRA	9060.3	0.08	precise	0	-
275	bp1	A373R1	somatic_tumour	2L	6641134	CG31635	intron	2R	24855620	intergenic	intergenic	TRA	18214.5	0.15	precise	0	-
275	bp2	A373R1	somatic_tumour	2R	24855620	intergenic	intergenic	2L	6641134	CG31635	intron	TRA	18214.5	0.15	precise	0	-
281	bp1	A373R1	somatic_tumour	2L	6755669	CG11221	3UTR	2L	9204071	tai	intron	BND	2448.4	0.16	precise	GAGATCAAA	Alt-EJ
281	bp2	A373R1	somatic_tumour	2L	9204071	tai	intron	2L	6755669	CG11221	3UTR	BND	2448.4	0.16	precise	GAGATCAAA	Alt-EJ
284	bp1	A373R1	somatic_tumour	2L	6896861	Nlg2	exon_1	3L	21622111	CG7166	intron	TRA	14725.2	0.08	precise	0	-
284	bp2	A373R1	somatic_tumour	3L	21622111	CG7166	intron	2L	6896861	Nlg2	exon_1	TRA	14725.2	0.08	precise	0	-
285	bp1	A373R1	somatic_tumour	2L	6904847	Nlg2	exon_12	2L	17651652	CadN	intron	COMPLEX_BND	10746.8	0.07	precise	0	-
285	bp2	A373R1	somatic_tumour	2L	17651652	CadN	intron	2L	6904847	Nlg2	exon_12	COMPLEX_BND	10746.8	0.07	precise	0	-
285	bp1	A373R1	somatic_tumour	3L	15675946	intergenic	intergenic	2L	6904318	Nlg2	exon_10	COMPLEX_TRA	8771.6	0.11	precise	0	-
285	bp2	A373R1	somatic_tumour	2L	6904318	Nlg2	exon_10	3L	15675946	intergenic	intergenic	COMPLEX_TRA	8771.6	0.11	precise	0	-
285	bp1	A373R1	somatic_tumour	X	11061683	intergenic	intergenic	2L	17652063	CadN	intron	COMPLEX_TRA	6590.4	0.11	precise	0	-
285	bp2	A373R1	somatic_tumour	2L	17652063	CadN	intron	X	11061683	intergenic	intergenic	COMPLEX_TRA	6590.4	0.11	precise	0	-
291	bp1	A373R1	somatic_tumour	2L	7069280	CG11289	exon	2L	15036944	CIAPIN1	exon_3	BND	7967.7	0.08	precise	0	-
291	bp2	A373R1	somatic_tumour	2L	15036944	CIAPIN1	exon_3	2L	7069280	CG11289	exon	BND	7967.7	0.08	precise	0	-
292	bp1	A373R1	somatic_tumour	2L	7096540	intergenic	intergenic	3L	4603018	Src64B	intron	TRA	2493.5	0.12	precise	TGCGAAC	Alt-EJ
292	bp2	A373R1	somatic_tumour	3L	4603018	Src64B	intron	2L	7096540	intergenic	intergenic	TRA	2493.5	0.12	precise	TGCGAAC	Alt-EJ
294	bp1	A373R1	somatic_tumour	2L	7116469	Pvf3	intron	2L	12408973	vir-1	intron	BND	5292.5	0.08	precise	ATTTCCCACTC	Alt-EJ
294	bp2	A373R1	somatic_tumour	2L	12408973	vir-1	intron	2L	7116469	Pvf3	intron	BND	5292.5	0.08	precise	ATTTCCCACTC	Alt-EJ
301	bp1	A373R1	somatic_tumour	2L	7331078	intergenic	intergenic	X	6085542	Mipp2	intron	TRA	1245.5	0.18	precise	0	-
301	bp2	A373R1	somatic_tumour	X	6085542	Mipp2	intron	2L	7331078	intergenic	intergenic	TRA	1245.5	0.18	precise	0	-
305	bp1	A373R1	somatic_tumour	2L	7458082	Gr28b	exon_1	3R	17006857	Irc	exon_10	TRA	9548.8	0.14	precise	CTGAA	Alt-EJ
305	bp2	A373R1	somatic_tumour	3R	17006857	Irc	exon_10	2L	7458082	Gr28b	exon_1	TRA	9548.8	0.14	precise	CTGAA	Alt-EJ
313	bp1	A373R1	somatic_tumour	2L	7807464	cdc14	intron	2R	8157412	CR30374	exon_3	TRA	349.9	0.1	precise	GGCAG	Alt-EJ
313	bp2	A373R1	somatic_tumour	2R	8157412	CR30374	exon_3	2L	7807464	cdc14	intron	TRA	349.9	0.1	precise	GGCAG	Alt-EJ
319	bp1	A373R1	somatic_tumour	3R	28721607	htt	exon_20	3L	20665219	intergenic	intergenic	TRA	8056.4	0.11	precise	0	-
319	bp2	A373R1	somatic_tumour	3L	20665219	intergenic	intergenic	3R	28721607	htt	exon_20	TRA	8056.4	0.11	precise	0	-
321	bp1	A373R1	somatic_tumour	2L	8190937	CG8475	3UTR	3L	14139352	intergenic	intergenic	TRA	5948.4	0.09	precise	0	-
321	bp2	A373R1	somatic_tumour	3L	14139352	intergenic	intergenic	2L	8190937	CG8475	3UTR	TRA	5948.4	0.09	precise	0	-
321	bp1	A373R1	somatic_tumour	3R	20430513	Gfrl	intron	3L	14115937	Sox21b	intron	TRA	6314.6	0.15	precise	0	-
321	bp2	A373R1	somatic_tumour	3L	14115937	Sox21b	intron	3R	20430513	Gfrl	intron	TRA	6314.6	0.15	precise	0	-
324	bp1	A373R1	somatic_tumour	2L	8299956	Btk29A	intron	3R	7942912	dsx	intron	TRA	357.0	0.1	precise	0	NHEJ
324	bp2	A373R1	somatic_tumour	3R	7942912	dsx	intron	2L	8299956	Btk29A	intron	TRA	357.0	0.1	precise	0	NHEJ
341	bp1	A373R1	somatic_tumour	X	12959888	CG32642	exon_2	2L	6503252	CG31637	intron	TRA	6456.6	0.1	precise	0	-
341	bp2	A373R1	somatic_tumour	2L	6503252	CG31637	intron	X	12959888	CG32642	exon_2	TRA	6456.6	0.1	precise	0	-
347	bp1	A373R1	somatic_tumour	2L	8839310	intergenic	intergenic	3L	20350987	eRF1	exon_4	TRA	11511.7	0.09	precise	0	FoSTeS
347	bp2	A373R1	somatic_tumour	3L	20350987	eRF1	exon_4	2L	8839310	intergenic	intergenic	TRA	11511.7	0.09	precise	0	FoSTeS
355	bp1	A373R1	somatic_tumour	2L	9160984	CG32982	intron	3L	10614528	intergenic	intergenic	TRA	1453.5	0.08	precise	0	-
355	bp2	A373R1	somatic_tumour	3L	10614528	intergenic	intergenic	2L	9160984	CG32982	intron	TRA	1453.5	0.08	precise	0	-
359	bp1	A373R1	somatic_tumour	2L	9252716	borr	exon_1	2R	15410147	CG43729	exon_2	TRA	6157.4	0.09	precise	CGAGCAGCTG	Alt-EJ
359	bp2	A373R1	somatic_tumour	2R	15410147	CG43729	exon_2	2L	9252716	borr	exon_1	TRA	6157.4	0.09	precise	CGAGCAGCTG	Alt-EJ
368	bp1	A373R1	somatic_tumour	2L	9553073	jp	exon_7	3R	22593893	Efa6	intron	COMPLEX_TRA	13040.8	0.1	precise	0	-
368	bp2	A373R1	somatic_tumour	3R	22593893	Efa6	intron	2L	9553073	jp	exon_7	COMPLEX_TRA	13040.8	0.1	precise	0	-
368	bp1	A373R1	somatic_tumour	3R	22214137	Gld2	exon_1	3R	22598989	Efa6	intron	COMPLEX_BND	384.9	0.15	precise	0	-
368	bp2	A373R1	somatic_tumour	3R	22598989	Efa6	intron	3R	22214137	Gld2	exon_1	COMPLEX_BND	384.9	0.15	precise	0	-
397	bp1	A373R1	somatic_tumour	2L	10232710	eEF1delta	intron	2R	25187095	CG9380	exon_2	TRA	14954.4	0.27	precise	0	-
397	bp2	A373R1	somatic_tumour	2R	25187095	CG9380	exon_2	2L	10232710	eEF1delta	intron	TRA	14954.4	0.27	precise	0	-
400	bp1	A373R1	somatic_tumour	2L	10272992	Utx	intron	3R	22714734	wge	exon_5	TRA	12441.7	0.1	precise	0	-
400	bp2	A373R1	somatic_tumour	3R	22714734	wge	exon_5	2L	10272992	Utx	intron	TRA	12441.7	0.1	precise	0	-
403	bp1	A373R1	somatic_tumour	2L	10370395	rho-5	exon_2	2R	22650212	intergenic	intergenic	TRA	12279.8	0.09	precise	0	-
403	bp2	A373R1	somatic_tumour	2R	22650212	intergenic	intergenic	2L	10370395	rho-5	exon_2	TRA	12279.8	0.09	precise	0	-
406	bp1	A373R1	somatic_tumour	2L	775139	intergenic	intergenic	3R	5181428	cno	exon_11	TRA	4406.3	0.08	precise	0	-
406	bp2	A373R1	somatic_tumour	3R	5181428	cno	exon_11	2L	775139	intergenic	intergenic	TRA	4406.3	0.08	precise	0	-
406	bp1	A373R1	somatic_tumour	3R	10500610	intergenic	intergenic	2R	13698093	fas	intron	TRA	3197.5	0.09	precise	0	-
406	bp2	A373R1	somatic_tumour	2R	13698093	fas	intron	3R	10500610	intergenic	intergenic	TRA	3197.5	0.09	precise	0	-
406	bp1	A373R1	somatic_tumour	3R	10505784	intergenic	intergenic	X	18303974	intergenic	intergenic	TRA	7798.2	0.12	precise	0	-
406	bp2	A373R1	somatic_tumour	X	18303974	intergenic	intergenic	3R	10505784	intergenic	intergenic	TRA	7798.2	0.12	precise	0	-
409	bp1	A373R1	somatic_tumour	3L	12178302	CAH2	intron	2R	13922941	shot	intron	TRA	1744.6	0.08	precise	0	-
409	bp2	A373R1	somatic_tumour	2R	13922941	shot	intron	3L	12178302	CAH2	intron	TRA	1744.6	0.08	precise	0	-
411	bp1	A373R1	somatic_tumour	3R	15723838	intergenic	intergenic	X	20082047	intergenic	intergenic	TRA	4358.2	0.14	precise	0	-
411	bp2	A373R1	somatic_tumour	X	20082047	intergenic	intergenic	3R	15723838	intergenic	intergenic	TRA	4358.2	0.14	precise	0	-
423	bp1	A373R1	somatic_tumour	2L	11173435	Ca-beta	intron	2R	11436869	CG7777	intron	TRA	263.4	0.09	precise	0	-
423	bp2	A373R1	somatic_tumour	2R	11436869	CG7777	intron	2L	11173435	Ca-beta	intron	TRA	263.4	0.09	precise	0	-
434	bp1	A373R1	somatic_tumour	2L	11430408	intergenic	intergenic	2L	16208470	intergenic	intergenic	BND	4778.1	0.08	precise	0	-
434	bp2	A373R1	somatic_tumour	2L	16208470	intergenic	intergenic	2L	11430408	intergenic	intergenic	BND	4778.1	0.08	precise	0	-
440	bp1	A373R1	somatic_tumour	2L	11635382	intergenic	intergenic	X	14654037	intergenic	intergenic	TRA	3018.7	0.14	precise	0	FoSTeS
440	bp2	A373R1	somatic_tumour	X	14654037	intergenic	intergenic	2L	11635382	intergenic	intergenic	TRA	3018.7	0.14	precise	0	FoSTeS
455	bp1	A373R1	somatic_tumour	2L	11956048	CR43314	exon_2	X	15817056	sd	intron	TRA	3861.0	0.12	precise	GAACGA	Alt-EJ
455	bp2	A373R1	somatic_tumour	X	15817056	sd	intron	2L	11956048	CR43314	exon_2	TRA	3861.0	0.12	precise	GAACGA	Alt-EJ
456	bp1	A373R1	somatic_tumour	2L	12034802	CG18788	exon_2	3L	5489988	intergenic	intergenic	TRA	6544.8	0.11	precise	0	NHEJ
456	bp2	A373R1	somatic_tumour	3L	5489988	intergenic	intergenic	2L	12034802	CG18788	exon_2	TRA	6544.8	0.11	precise	0	NHEJ
458	bp1	A373R1	somatic_tumour	2L	12077864	intergenic	intergenic	3L	19491933	intergenic	intergenic	TRA	7414.1	0.16	precise	0	-
458	bp2	A373R1	somatic_tumour	3L	19491933	intergenic	intergenic	2L	12077864	intergenic	intergenic	TRA	7414.1	0.16	precise	0	-
466	bp1	A373R1	somatic_tumour	2L	12380393	bru2	intron	3L	19498719	CG9451	exon	TRA	7118.3	0.09	precise	0	-
466	bp2	A373R1	somatic_tumour	3L	19498719	CG9451	exon	2L	12380393	bru2	intron	TRA	7118.3	0.09	precise	0	-
486	bp1	A373R1	somatic_tumour	3R	12351025	CG10041	exon	2L	12910773	intergenic	intergenic	TRA	559.7	0.32	precise	0	-
486	bp2	A373R1	somatic_tumour	2L	12910773	intergenic	intergenic	3R	12351025	CG10041	exon	TRA	559.7	0.32	precise	0	-
496	bp1	A373R1	somatic_tumour	2L	13256942	CG31728	exon_4	3L	10524216	Rbfox1	intron	TRA	2732.7	0.09	precise	0	-
496	bp2	A373R1	somatic_tumour	3L	10524216	Rbfox1	intron	2L	13256942	CG31728	exon_4	TRA	2732.7	0.09	precise	0	-
498	bp1	A373R1	somatic_tumour	2L	13400090	CG7110	intron	X	16446231	eIF-2alpha	exon_1	TRA	3046.1	0.15	precise	0	-
498	bp2	A373R1	somatic_tumour	X	16446231	eIF-2alpha	exon_1	2L	13400090	CG7110	intron	TRA	3046.1	0.15	precise	0	-
508	bp1	A373R1	somatic_tumour	3R	23152458	unk	3UTR	3L	17334887	intergenic	intergenic	TRA	5817.6	0.12	precise	0	-
508	bp2	A373R1	somatic_tumour	3L	17334887	intergenic	intergenic	3R	23152458	unk	3UTR	TRA	5817.6	0.12	precise	0	-
511	bp1	A373R1	somatic_tumour	2L	13724341	intergenic	intergenic	X	14775902	CG5334	exon	TRA	1051.6	0.25	precise	0	FoSTeS
511	bp2	A373R1	somatic_tumour	X	14775902	CG5334	exon	2L	13724341	intergenic	intergenic	TRA	1051.6	0.25	precise	0	FoSTeS
515	bp1	A373R1	somatic_tumour	2L	13879502	CenG1A	5UTR	2L	14567889	intergenic	intergenic	TANDUP	688.4	0.1	precise	0	-
515	bp2	A373R1	somatic_tumour	2L	14567889	intergenic	intergenic	2L	13879502	CenG1A	5UTR	TANDUP	688.4	0.1	precise	0	-
518	bp1	A373R1	somatic_tumour	2L	14071477	nAChRalpha5	intron	X	1911534	Rbcn-3B	exon	TRA	12159.9	0.17	precise	0	-
518	bp2	A373R1	somatic_tumour	X	1911534	Rbcn-3B	exon	2L	14071477	nAChRalpha5	intron	TRA	12159.9	0.17	precise	0	-
518	bp1	A373R1	somatic_tumour	3L	14708172	ome	intron	X	1911665	Rbcn-3B	exon	TRA	12796.5	0.13	precise	0	-
518	bp2	A373R1	somatic_tumour	X	1911665	Rbcn-3B	exon	3L	14708172	ome	intron	TRA	12796.5	0.13	precise	0	-
518	bp1	A373R1	somatic_tumour	X	1911425	Rbcn-3B	exon	2L	12860859	intergenic	intergenic	TRA	10949.4	0.11	precise	0	-
518	bp2	A373R1	somatic_tumour	2L	12860859	intergenic	intergenic	X	1911425	Rbcn-3B	exon	TRA	10949.4	0.11	precise	0	-
522	bp1	A373R1	somatic_tumour	2L	14178344	CG43333	intron	X	1814038	CG42666	intron	TRA	12364.3	0.14	precise	ACGAAAC	Alt-EJ
522	bp2	A373R1	somatic_tumour	X	1814038	CG42666	intron	2L	14178344	CG43333	intron	TRA	12364.3	0.14	precise	ACGAAAC	Alt-EJ
532	bp1	A373R1	somatic_tumour	2L	14400065	elB	intron	3R	13771599	CG9297	exon_1	TRA	628.5	0.12	precise	0	-
532	bp2	A373R1	somatic_tumour	3R	13771599	CG9297	exon_1	2L	14400065	elB	intron	TRA	628.5	0.12	precise	0	-
532	bp1	A373R1	somatic_tumour	3R	11087993	intergenic	intergenic	X	17037396	CG45002	intron	TRA	5949.4	0.13	precise	0	-
532	bp2	A373R1	somatic_tumour	X	17037396	CG45002	intron	3R	11087993	intergenic	intergenic	TRA	5949.4	0.13	precise	0	-
532	bp1	A373R1	somatic_tumour	X	17039927	CG45002	intron	3R	13773055	CG9297	intron	TRA	3266.9	0.12	precise	0	-
532	bp2	A373R1	somatic_tumour	3R	13773055	CG9297	intron	X	17039927	CG45002	intron	TRA	3266.9	0.12	precise	0	-
533	bp1	A373R1	somatic_tumour	2L	14417213	Pburs	exon_1	2R	8193167	LRP1	intron	TRA	6224.0	0.23	precise	0	-
533	bp2	A373R1	somatic_tumour	2R	8193167	LRP1	intron	2L	14417213	Pburs	exon_1	TRA	6224.0	0.23	precise	0	-
536	bp1	A373R1	somatic_tumour	3R	29825658	neo	3UTR	X	8015188	Tbh	intron	TRA	21810.5	0.17	precise	0	-
536	bp2	A373R1	somatic_tumour	X	8015188	Tbh	intron	3R	29825658	neo	3UTR	TRA	21810.5	0.17	precise	0	-
565	bp1	A373R1	somatic_tumour	2L	15560997	kek3	intron	2L	19547841	intergenic	intergenic	BND	3986.8	0.14	precise	0	-
565	bp2	A373R1	somatic_tumour	2L	19547841	intergenic	intergenic	2L	15560997	kek3	intron	BND	3986.8	0.14	precise	0	-
571	bp1	A373R1	somatic_tumour	3R	18423017	fru	exon	2L	15785953	CG18109	exon	TRA	2637.1	0.09	precise	0	-
571	bp2	A373R1	somatic_tumour	2L	15785953	CG18109	exon	3R	18423017	fru	exon	TRA	2637.1	0.09	precise	0	-
592	bp1	A373R1	somatic_tumour	2L	16494892	Tpr2	intron	2R	23582411	apt	intron	TRA	7087.5	0.09	precise	0	-
592	bp2	A373R1	somatic_tumour	2R	23582411	apt	intron	2L	16494892	Tpr2	intron	TRA	7087.5	0.09	precise	0	-
594	bp1	A373R1	somatic_tumour	2L	16509529	CG5953	3UTR	2L	21146467	del	exon	DEL	4636.9	0.13	precise	0	-
594	bp2	A373R1	somatic_tumour	2L	21146467	del	exon	2L	16509529	CG5953	3UTR	DEL	4636.9	0.13	precise	0	-
598	bp1	A373R1	somatic_tumour	2L	16567620	CG42389	intron	3L	25334312	CG45782	intron	TRA	8766.7	0.18	precise	0	-
598	bp2	A373R1	somatic_tumour	3L	25334312	CG45782	intron	2L	16567620	CG42389	intron	TRA	8766.7	0.18	precise	0	-
615	bp1	A373R1	somatic_tumour	2R	13604000	intergenic	intergenic	2L	7298204	intergenic	intergenic	TRA	6305.8	0.09	precise	0	-
615	bp2	A373R1	somatic_tumour	2L	7298204	intergenic	intergenic	2R	13604000	intergenic	intergenic	TRA	6305.8	0.09	precise	0	-
628	bp1	A373R1	somatic_tumour	2L	17692544	CadN	intron	3L	6761859	CG32392	intron	TRA	10930.7	0.16	precise	T	Alt-EJ
628	bp2	A373R1	somatic_tumour	3L	6761859	CG32392	intron	2L	17692544	CadN	intron	TRA	10930.7	0.16	precise	T	Alt-EJ
629	bp1	A373R1	somatic_tumour	2L	17726659	CadN	intron	X	21570749	intergenic	intergenic	TRA	3844.1	0.13	precise	0	NHEJ
629	bp2	A373R1	somatic_tumour	X	21570749	intergenic	intergenic	2L	17726659	CadN	intron	TRA	3844.1	0.13	precise	0	NHEJ
641	bp1	A373R1	somatic_tumour	2L	17918519	intergenic	intergenic	3L	22565067	intergenic	intergenic	TRA	4646.5	0.1	precise	0	-
641	bp2	A373R1	somatic_tumour	3L	22565067	intergenic	intergenic	2L	17918519	intergenic	intergenic	TRA	4646.5	0.1	precise	0	-
642	bp1	A373R1	somatic_tumour	2L	17933410	intergenic	intergenic	3R	6473122	intergenic	intergenic	TRA	11460.3	0.08	precise	0	-
642	bp2	A373R1	somatic_tumour	3R	6473122	intergenic	intergenic	2L	17933410	intergenic	intergenic	TRA	11460.3	0.08	precise	0	-
646	bp1	A373R1	somatic_tumour	2L	17981161	btv	exon_5	3L	4587251	CG42540	intron	TRA	13393.9	0.08	precise	0	NHEJ
646	bp2	A373R1	somatic_tumour	3L	4587251	CG42540	intron	2L	17981161	btv	exon_5	TRA	13393.9	0.08	precise	0	NHEJ
650	bp1	A373R1	somatic_tumour	2L	18139645	Socs36E	exon	2R	4431052	Gprk1	intron	TRA	13708.6	0.1	precise	0	-
650	bp2	A373R1	somatic_tumour	2R	4431052	Gprk1	intron	2L	18139645	Socs36E	exon	TRA	13708.6	0.1	precise	0	-
656	bp1	A373R1	somatic_tumour	2L	18249668	CG42750	intron	2L	18349554	Fas3	intron	BND	99.9	0.08	precise	GCTCAAG	Alt-EJ
656	bp2	A373R1	somatic_tumour	2L	18349554	Fas3	intron	2L	18249668	CG42750	intron	BND	99.9	0.08	precise	GCTCAAG	Alt-EJ
672	bp1	A373R1	somatic_tumour	2L	18885742	intergenic	intergenic	2L	19598141	Lar	intron	BND	712.4	0.1	precise	GCCA	Alt-EJ
672	bp2	A373R1	somatic_tumour	2L	19598141	Lar	intron	2L	18885742	intergenic	intergenic	BND	712.4	0.1	precise	GCCA	Alt-EJ
674	bp1	A373R1	somatic_tumour	2L	18949106	CG10428	exon_1	2R	17122080	CR45272	exon_1	TRA	1827.0	0.15	precise	0	FoSTeS
674	bp2	A373R1	somatic_tumour	2R	17122080	CR45272	exon_1	2L	18949106	CG10428	exon_1	TRA	1827.0	0.15	precise	0	FoSTeS
686	bp1	A373R1	somatic_tumour	2L	19319576	intergenic	intergenic	3R	14536681	Pde6	intron	TRA	4782.9	0.12	precise	0	-
686	bp2	A373R1	somatic_tumour	3R	14536681	Pde6	intron	2L	19319576	intergenic	intergenic	TRA	4782.9	0.12	precise	0	-
687	bp1	A373R1	somatic_tumour	2L	19462745	intergenic	intergenic	3L	17190980	Rbp6	intron	TRA	2271.8	0.15	precise	0	-
687	bp2	A373R1	somatic_tumour	3L	17190980	Rbp6	intron	2L	19462745	intergenic	intergenic	TRA	2271.8	0.15	precise	0	-
689	bp1	A373R1	somatic_tumour	2L	19472495	intergenic	intergenic	3R	10328915	Bruce	exon_3	TRA	9143.6	0.08	precise	0	-
689	bp2	A373R1	somatic_tumour	3R	10328915	Bruce	exon_3	2L	19472495	intergenic	intergenic	TRA	9143.6	0.08	precise	0	-
691	bp1	A373R1	somatic_tumour	2L	19515803	Hasp	exon_3	2R	15205313	Ir51a	exon_1	TRA	4310.5	0.11	precise	CGT	Alt-EJ
691	bp2	A373R1	somatic_tumour	2R	15205313	Ir51a	exon_1	2L	19515803	Hasp	exon_3	TRA	4310.5	0.11	precise	CGT	Alt-EJ
693	bp1	A373R1	somatic_tumour	2L	19628390	CG46244	intron	2R	23232683	CG3092	5UTR	TRA	3604.3	0.11	precise	0	-
693	bp2	A373R1	somatic_tumour	2R	23232683	CG3092	5UTR	2L	19628390	CG46244	intron	TRA	3604.3	0.11	precise	0	-
698	bp1	A373R1	somatic_tumour	2L	19792664	CG10466	exon	3L	12384685	Ncc69	intron	TRA	7408.0	0.17	precise	T	FoSTeS
698	bp2	A373R1	somatic_tumour	3L	12384685	Ncc69	intron	2L	19792664	CG10466	exon	TRA	7408.0	0.17	precise	T	FoSTeS
699	bp1	A373R1	somatic_tumour	2L	19811204	sick	intron	X	10391682	flw	intron	TRA	9419.5	0.12	precise	0	NHEJ
699	bp2	A373R1	somatic_tumour	X	10391682	flw	intron	2L	19811204	sick	intron	TRA	9419.5	0.12	precise	0	NHEJ
701	bp1	A373R1	somatic_tumour	2L	16179327	Ca-alpha1D	exon_19	2R	11318535	nompA	intron	TRA	4860.8	0.09	precise	0	-
701	bp2	A373R1	somatic_tumour	2R	11318535	nompA	intron	2L	16179327	Ca-alpha1D	exon_19	TRA	4860.8	0.09	precise	0	-
704	bp1	A373R1	somatic_tumour	3L	3085633	CG11486	exon_6	2R	14153587	pea	exon_1	TRA	11068.0	0.09	precise	0	-
704	bp2	A373R1	somatic_tumour	2R	14153587	pea	exon_1	3L	3085633	CG11486	exon_6	TRA	11068.0	0.09	precise	0	-
704	bp1	A373R1	somatic_tumour	3L	22957247	intergenic	intergenic	3R	8474285	CG45263	intron	TRA	14483.0	0.23	precise	0	-
704	bp2	A373R1	somatic_tumour	3R	8474285	CG45263	intron	3L	22957247	intergenic	intergenic	TRA	14483.0	0.23	precise	0	-
710	bp1	A373R1	somatic_tumour	2L	17252110	beat-IIIc	intron	2R	24133346	tamo	exon_1	COMPLEX_TRA	6881.2	0.12	precise	0	-
710	bp2	A373R1	somatic_tumour	2R	24133346	tamo	exon_1	2L	17252110	beat-IIIc	intron	COMPLEX_TRA	6881.2	0.12	precise	0	-
710	bp1	A373R1	somatic_tumour	2L	20424190	CG15130	intron	2R	24129750	tamo	exon_4	TRA	3705.6	0.11	precise	GCG	Alt-EJ
710	bp2	A373R1	somatic_tumour	2R	24129750	tamo	exon_4	2L	20424190	CG15130	intron	TRA	3705.6	0.11	precise	GCG	Alt-EJ
710	bp1	A373R1	somatic_tumour	2R	24126253	CG43776	exon_1	3R	17871707	tinc	3UTR	COMPLEX_TRA	6254.5	0.22	precise	0	-
710	bp2	A373R1	somatic_tumour	3R	17871707	tinc	3UTR	2R	24126253	CG43776	exon_1	COMPLEX_TRA	6254.5	0.22	precise	0	-
710	bp1	A373R1	somatic_tumour	2R	24128278	tamo	exon	2L	11977523	intergenic	intergenic	COMPLEX_TRA	12150.8	0.11	precise	0	-
710	bp2	A373R1	somatic_tumour	2L	11977523	intergenic	intergenic	2R	24128278	tamo	exon	COMPLEX_TRA	12150.8	0.11	precise	0	-
711	bp1	A373R1	somatic_tumour	2L	20495067	CG34007	5UTR	3L	5238975	shep	intron	TRA	15256.1	0.22	precise	A	Alt-EJ
711	bp2	A373R1	somatic_tumour	3L	5238975	shep	intron	2L	20495067	CG34007	5UTR	TRA	15256.1	0.22	precise	A	Alt-EJ
715	bp1	A373R1	somatic_tumour	2L	20674142	CG31678	intron	3R	26004104	intergenic	intergenic	TRA	5330.0	0.28	precise	0	-
715	bp2	A373R1	somatic_tumour	3R	26004104	intergenic	intergenic	2L	20674142	CG31678	intron	TRA	5330.0	0.28	precise	0	-
719	bp1	A373R1	somatic_tumour	2L	20828628	intergenic	intergenic	2R	11873809	CG13185	exon_8	TRA	8954.8	0.32	precise	0	NHEJ
719	bp2	A373R1	somatic_tumour	2R	11873809	CG13185	exon_8	2L	20828628	intergenic	intergenic	TRA	8954.8	0.32	precise	0	NHEJ
726	bp1	A373R1	somatic_tumour	2R	19019261	intergenic	intergenic	3R	28186278	CG34354	intron	TRA	9167.0	0.09	precise	0	-
726	bp2	A373R1	somatic_tumour	3R	28186278	CG34354	intron	2R	19019261	intergenic	intergenic	TRA	9167.0	0.09	precise	0	-
726	bp1	A373R1	somatic_tumour	3R	28188345	CG34354	intron	X	15489595	Gmap	intron	TRA	12698.8	0.16	precise	0	-
726	bp2	A373R1	somatic_tumour	X	15489595	Gmap	intron	3R	28188345	CG34354	intron	TRA	12698.8	0.16	precise	0	-
741	bp1	A373R1	somatic_tumour	2L	21740345	step	3UTR	3L	10584553	Rbfox1	intron	TRA	11155.8	0.21	precise	0	-
741	bp2	A373R1	somatic_tumour	3L	10584553	Rbfox1	intron	2L	21740345	step	3UTR	TRA	11155.8	0.21	precise	0	-
747	bp1	A373R1	somatic_tumour	2L	22041503	CG31601	exon	X	15476281	CG6324	intron	TRA	6565.2	0.1	precise	TGATGG	Alt-EJ
747	bp2	A373R1	somatic_tumour	X	15476281	CG6324	intron	2L	22041503	CG31601	exon	TRA	6565.2	0.1	precise	TGATGG	Alt-EJ
761	bp1	A373R1	somatic_tumour	2L	22997150	intergenic	intergenic	X	22671759	CR44997	ncRNA	TRA	325.4	0.19	precise	TCTAC	Alt-EJ
761	bp2	A373R1	somatic_tumour	X	22671759	CR44997	ncRNA	2L	22997150	intergenic	intergenic	TRA	325.4	0.19	precise	TCTAC	Alt-EJ
764	bp1	A373R1	somatic_tumour	2R	335228	CG45781	intron	2L	3069253	toc	3UTR	TRA	2734.0	0.1	precise	0	NHEJ
764	bp2	A373R1	somatic_tumour	2L	3069253	toc	3UTR	2R	335228	CG45781	intron	TRA	2734.0	0.1	precise	0	NHEJ
789	bp1	A373R1	somatic_tumour	2R	3524816	CR41501	exon_1	X	4602283	CR32773	ncRNA	TRA	1077.5	0.22	precise	CTGG	Alt-EJ
789	bp2	A373R1	somatic_tumour	X	4602283	CR32773	ncRNA	2R	3524816	CR41501	exon_1	TRA	1077.5	0.22	precise	CTGG	Alt-EJ
793	bp1	A373R1	somatic_tumour	3R	14400705	cv-c	intron	2R	12544913	fra	intron	TRA	1855.8	0.18	precise	0	-
793	bp2	A373R1	somatic_tumour	2R	12544913	fra	intron	3R	14400705	cv-c	intron	TRA	1855.8	0.18	precise	0	-
817	bp1	A373R1	somatic_tumour	2R	5808875	dpr12	intron	X	15879182	tay	exon_12	TRA	10070.3	0.18	precise	0	-
817	bp2	A373R1	somatic_tumour	X	15879182	tay	exon_12	2R	5808875	dpr12	intron	TRA	10070.3	0.18	precise	0	-
820	bp1	A373R1	somatic_tumour	2R	5894879	CG43366	intron	2L	2397528	VGlut	intron	TRA	3497.4	0.16	precise	0	-
820	bp2	A373R1	somatic_tumour	2L	2397528	VGlut	intron	2R	5894879	CG43366	intron	TRA	3497.4	0.16	precise	0	-
822	bp1	A373R1	somatic_tumour	3L	6324285	intergenic	intergenic	4	729789	bt	intron	TRA	5594.5	0.1	precise	0	-
822	bp2	A373R1	somatic_tumour	4	729789	bt	intron	3L	6324285	intergenic	intergenic	TRA	5594.5	0.1	precise	0	-
824	bp1	A373R1	somatic_tumour	2R	5992659	Src42A	intron	3R	13813479	tal-2A	5UTR	TRA	7820.8	0.13	precise	0	-
824	bp2	A373R1	somatic_tumour	3R	13813479	tal-2A	5UTR	2R	5992659	Src42A	intron	TRA	7820.8	0.13	precise	0	-
842	bp1	A373R1	somatic_tumour	2R	6618618	jing	exon_6	3L	4022987	CG11594	3UTR	COMPLEX_TRA	2595.6	0.08	precise	0	-
842	bp2	A373R1	somatic_tumour	3L	4022987	CG11594	3UTR	2R	6618618	jing	exon_6	COMPLEX_TRA	2595.6	0.08	precise	0	-
842	bp1	A373R1	somatic_tumour	3R	7005933	intergenic	intergenic	2R	7850976	Dgk	exon_8	COMPLEX_TRA	845.0	0.11	precise	0	-
842	bp2	A373R1	somatic_tumour	2R	7850976	Dgk	exon_8	3R	7005933	intergenic	intergenic	COMPLEX_TRA	845.0	0.11	precise	0	-
851	bp1	A373R1	somatic_tumour	2R	6855417	intergenic	intergenic	2L	911647	intergenic	intergenic	TRA	5943.8	0.21	precise	0	-
851	bp2	A373R1	somatic_tumour	2L	911647	intergenic	intergenic	2R	6855417	intergenic	intergenic	TRA	5943.8	0.21	precise	0	-
861	bp1	A373R1	somatic_tumour	2R	7288520	pwn	intron	2L	7256491	Wnt4	exon_3	TRA	32.0	0.08	precise	0	-
861	bp2	A373R1	somatic_tumour	2L	7256491	Wnt4	exon_3	2R	7288520	pwn	intron	TRA	32.0	0.08	precise	0	-
864	bp1	A373R1	somatic_tumour	2R	7317301	intergenic	intergenic	X	15748502	Tcp-1zeta	exon	TRA	8431.2	0.11	precise	0	FoSTeS
864	bp2	A373R1	somatic_tumour	X	15748502	Tcp-1zeta	exon	2R	7317301	intergenic	intergenic	TRA	8431.2	0.11	precise	0	FoSTeS
866	bp1	A373R1	somatic_tumour	2R	7358331	Dscam1	exon_6	X	15895290	shi	exon_4	TRA	8537.0	0.16	precise	0	-
866	bp2	A373R1	somatic_tumour	X	15895290	shi	exon_4	2R	7358331	Dscam1	exon_6	TRA	8537.0	0.16	precise	0	-
876	bp1	A373R1	somatic_tumour	2R	7680308	LRR	exon_16	2R	15693666	CG30087	exon	BND	8013.4	0.06	precise	CCA	Alt-EJ
876	bp2	A373R1	somatic_tumour	2R	15693666	CG30087	exon	2R	7680308	LRR	exon_16	BND	8013.4	0.06	precise	CCA	Alt-EJ
894	bp1	A373R1	somatic_tumour	2R	8342068	pdm3	intron	2R	23836897	CG5549	exon	BND	15494.8	0.07	precise	0	-
894	bp2	A373R1	somatic_tumour	2R	23836897	CG5549	exon	2R	8342068	pdm3	intron	BND	15494.8	0.07	precise	0	-
899	bp1	A373R1	somatic_tumour	2R	8397888	CG2121	exon_3	3L	7531805	lqf	intron	TRA	866.1	0.09	precise	0	NHEJ
899	bp2	A373R1	somatic_tumour	3L	7531805	lqf	intron	2R	8397888	CG2121	exon_3	TRA	866.1	0.09	precise	0	NHEJ
912	bp1	A373R1	somatic_tumour	2R	8694440	CG8586	exon	2R	20438390	CG12484	intron	BND	11744.0	0.08	precise	TCGCC	Alt-EJ
912	bp2	A373R1	somatic_tumour	2R	20438390	CG12484	intron	2R	8694440	CG8586	exon	BND	11744.0	0.08	precise	TCGCC	Alt-EJ
915	bp1	A373R1	somatic_tumour	3L	1264570	tfc	intron	3R	26637981	CR46233	exon_2	TRA	25373.4	0.13	precise	0	-
915	bp2	A373R1	somatic_tumour	3R	26637981	CR46233	exon_2	3L	1264570	tfc	intron	TRA	25373.4	0.13	precise	0	-
918	bp1	A373R1	somatic_tumour	2R	8853032	sns	3UTR	2R	13338036	CR44206	ncRNA	BND	4485.0	0.1	precise	0	-
918	bp2	A373R1	somatic_tumour	2R	13338036	CR44206	ncRNA	2R	8853032	sns	3UTR	BND	4485.0	0.1	precise	0	-
924	bp1	A373R1	somatic_tumour	2L	2138379	tho2	intron	2R	5957839	CG7882	5UTR	TRA	3819.5	0.25	precise	0	-
924	bp2	A373R1	somatic_tumour	2R	5957839	CG7882	5UTR	2L	2138379	tho2	intron	TRA	3819.5	0.25	precise	0	-
931	bp1	A373R1	somatic_tumour	2R	9254537	Pkn	exon_8	3R	15261644	Su(var)3-9	exon	TRA	6007.1	0.13	precise	0	-
931	bp2	A373R1	somatic_tumour	3R	15261644	Su(var)3-9	exon	2R	9254537	Pkn	exon_8	TRA	6007.1	0.13	precise	0	-
944	bp1	A373R1	somatic_tumour	2R	9806107	CG1688	intron	3R	14331603	NK7.1	intron	TRA	4525.5	0.16	precise	0	-
944	bp2	A373R1	somatic_tumour	3R	14331603	NK7.1	intron	2R	9806107	CG1688	intron	TRA	4525.5	0.16	precise	0	-
947	bp1	A373R1	somatic_tumour	2R	9920812	Mef2	intron	2R	20076023	intergenic	intergenic	BND	10155.2	0.08	precise	0	-
947	bp2	A373R1	somatic_tumour	2R	20076023	intergenic	intergenic	2R	9920812	Mef2	intron	BND	10155.2	0.08	precise	0	-
952	bp1	A373R1	somatic_tumour	2R	9980635	eve	3UTR	X	18334791	CG6123	intron	TRA	8354.2	0.12	precise	0	-
952	bp2	A373R1	somatic_tumour	X	18334791	CG6123	intron	2R	9980635	eve	3UTR	TRA	8354.2	0.12	precise	0	-
961	bp1	A373R1	somatic_tumour	3L	866729	CG12502	exon_2	2L	9983336	intergenic	intergenic	TRA	9116.6	0.08	precise	0	-
961	bp2	A373R1	somatic_tumour	2L	9983336	intergenic	intergenic	3L	866729	CG12502	exon_2	TRA	9116.6	0.08	precise	0	-
967	bp1	A373R1	somatic_tumour	2R	10243407	Hdc	exon_5	X	20347986	intergenic	intergenic	TRA	10104.6	0.11	precise	0	-
967	bp2	A373R1	somatic_tumour	X	20347986	intergenic	intergenic	2R	10243407	Hdc	exon_5	TRA	10104.6	0.11	precise	0	-
973	bp1	A373R1	somatic_tumour	2R	10428179	intergenic	intergenic	2L	10871405	intergenic	intergenic	TRA	443.2	0.08	precise	0	-
973	bp2	A373R1	somatic_tumour	2L	10871405	intergenic	intergenic	2R	10428179	intergenic	intergenic	TRA	443.2	0.08	precise	0	-
983	bp1	A373R1	somatic_tumour	2R	10794123	CG33144	intron	3R	7552948	intergenic	intergenic	TRA	3241.2	0.1	precise	0	-
983	bp2	A373R1	somatic_tumour	3R	7552948	intergenic	intergenic	2R	10794123	CG33144	intron	TRA	3241.2	0.1	precise	0	-
1011	bp1	A373R1	somatic_tumour	2R	11700529	intergenic	intergenic	3L	15203449	intergenic	intergenic	TRA	3502.9	0.11	precise	0	-
1011	bp2	A373R1	somatic_tumour	3L	15203449	intergenic	intergenic	2R	11700529	intergenic	intergenic	TRA	3502.9	0.11	precise	0	-
1013	bp1	A373R1	somatic_tumour	X	10639966	X11Lbeta	intron	X	14498877	intergenic	intergenic	COMPLEX_DEL	3858.9	0.23	precise	0	-
1013	bp2	A373R1	somatic_tumour	X	14498877	intergenic	intergenic	X	10639966	X11Lbeta	intron	COMPLEX_DEL	3858.9	0.23	precise	0	-
1016	bp1	A373R1	somatic_tumour	2R	11826580	CG13192	exon	3R	28038328	CG34362	intron	TRA	16211.7	0.22	precise	0	-
1016	bp2	A373R1	somatic_tumour	3R	28038328	CG34362	intron	2R	11826580	CG13192	exon	TRA	16211.7	0.22	precise	0	-
1020	bp1	A373R1	somatic_tumour	3R	17020960	AdSL	exon	3L	14366282	fz	intron	TRA	2654.7	0.14	precise	0	-
1020	bp2	A373R1	somatic_tumour	3L	14366282	fz	intron	3R	17020960	AdSL	exon	TRA	2654.7	0.14	precise	0	-
1026	bp1	A373R1	somatic_tumour	2R	12184617	CG13175	exon_3	3R	18466808	fru	intron	TRA	6282.2	0.09	precise	0	-
1026	bp2	A373R1	somatic_tumour	3R	18466808	fru	intron	2R	12184617	CG13175	exon_3	TRA	6282.2	0.09	precise	0	-
1031	bp1	A373R1	somatic_tumour	2R	12256171	intergenic	intergenic	3L	5324853	intergenic	intergenic	TRA	6931.3	0.1	precise	0	-
1031	bp2	A373R1	somatic_tumour	3L	5324853	intergenic	intergenic	2R	12256171	intergenic	intergenic	TRA	6931.3	0.1	precise	0	-
1039	bp1	A373R1	somatic_tumour	2R	12473427	CG8550	exon	2L	903602	intergenic	intergenic	TRA	11569.8	0.11	precise	0	-
1039	bp2	A373R1	somatic_tumour	2L	903602	intergenic	intergenic	2R	12473427	CG8550	exon	TRA	11569.8	0.11	precise	0	-
1053	bp1	A373R1	somatic_tumour	X	16818387	CG4829	intron	2L	20223158	intergenic	intergenic	TRA	3404.8	0.24	precise	0	-
1053	bp2	A373R1	somatic_tumour	2L	20223158	intergenic	intergenic	X	16818387	CG4829	intron	TRA	3404.8	0.24	precise	0	-
1061	bp1	A373R1	somatic_tumour	2R	13204947	CG34315	exon_7	2R	21389437	Acox57D-d	5UTR	BND	8184.5	0.08	precise	0	-
1061	bp2	A373R1	somatic_tumour	2R	21389437	Acox57D-d	5UTR	2R	13204947	CG34315	exon_7	BND	8184.5	0.08	precise	0	-
1079	bp1	A373R1	somatic_tumour	2R	13835045	CG6337	exon_1	3R	11416583	CG6723	exon_7	TRA	2418.5	0.15	precise	0	-
1079	bp2	A373R1	somatic_tumour	3R	11416583	CG6723	exon_7	2R	13835045	CG6337	exon_1	TRA	2418.5	0.15	precise	0	-
1080	bp1	A373R1	somatic_tumour	2R	13875021	shot	exon_17	2R	22287377	intergenic	intergenic	BND	8412.4	0.08	precise	0	-
1080	bp2	A373R1	somatic_tumour	2R	22287377	intergenic	intergenic	2R	13875021	shot	exon_17	BND	8412.4	0.08	precise	0	-
1094	bp1	A373R1	somatic_tumour	2R	14601180	RpI1	5UTR	X	1991599	Hr4	intron	TRA	12609.6	0.12	precise	0	-
1094	bp2	A373R1	somatic_tumour	X	1991599	Hr4	intron	2R	14601180	RpI1	5UTR	TRA	12609.6	0.12	precise	0	-
1097	bp1	A373R1	somatic_tumour	2R	14618994	Sec61beta	exon_2	2L	13475800	CG42784	exon_4	TRA	1143.2	0.2	precise	0	-
1097	bp2	A373R1	somatic_tumour	2L	13475800	CG42784	exon_4	2R	14618994	Sec61beta	exon_2	TRA	1143.2	0.2	precise	0	-
1098	bp1	A373R1	somatic_tumour	2R	3091235	dpr21	intron	3L	7252343	CG14830	intron	TRA	4161.1	0.1	precise	0	-
1098	bp2	A373R1	somatic_tumour	3L	7252343	CG14830	intron	2R	3091235	dpr21	intron	TRA	4161.1	0.1	precise	0	-
1102	bp1	A373R1	somatic_tumour	2R	14716686	intergenic	intergenic	3L	21521629	Cdk12	exon	TRA	6804.9	0.11	precise	0	-
1102	bp2	A373R1	somatic_tumour	3L	21521629	Cdk12	exon	2R	14716686	intergenic	intergenic	TRA	6804.9	0.11	precise	0	-
1115	bp1	A373R1	somatic_tumour	X	4028619	intergenic	intergenic	3R	5477306	Hcs	exon_4	TRA	1448.7	0.24	precise	0	-
1115	bp2	A373R1	somatic_tumour	3R	5477306	Hcs	exon_4	X	4028619	intergenic	intergenic	TRA	1448.7	0.24	precise	0	-
1115	bp1	A373R1	somatic_tumour	X	4028631	intergenic	intergenic	3R	5477306	Hcs	exon_4	TRA	1448.7	0.24	precise	0	-
1115	bp2	A373R1	somatic_tumour	3R	5477306	Hcs	exon_4	X	4028631	intergenic	intergenic	TRA	1448.7	0.24	precise	0	-
1120	bp1	A373R1	somatic_tumour	2R	15495428	CG12964	intron	3R	31973366	heph	intron	TRA	16477.9	0.28	precise	0	-
1120	bp2	A373R1	somatic_tumour	3R	31973366	heph	intron	2R	15495428	CG12964	intron	TRA	16477.9	0.28	precise	0	-
1136	bp1	A373R1	somatic_tumour	2L	12614286	Ref2	intron	2R	6138632	EcR	intron	TRA	6475.7	0.12	precise	0	-
1136	bp2	A373R1	somatic_tumour	2R	6138632	EcR	intron	2L	12614286	Ref2	intron	TRA	6475.7	0.12	precise	0	-
1150	bp1	A373R1	somatic_tumour	2R	16406408	Sema-2b	intron	X	8278871	nAChRalpha3	3UTR	TRA	8127.5	0.14	precise	0	-
1150	bp2	A373R1	somatic_tumour	X	8278871	nAChRalpha3	3UTR	2R	16406408	Sema-2b	intron	TRA	8127.5	0.14	precise	0	-
1172	bp1	A373R1	somatic_tumour	2R	16895804	intergenic	intergenic	3L	5409780	intergenic	intergenic	TRA	11486.0	0.13	precise	0	-
1172	bp2	A373R1	somatic_tumour	3L	5409780	intergenic	intergenic	2R	16895804	intergenic	intergenic	TRA	11486.0	0.13	precise	0	-
1173	bp1	A373R1	somatic_tumour	2R	16910917	intergenic	intergenic	2R	17596715	ND-51L1	exon	BND	685.8	0.08	precise	0	-
1173	bp2	A373R1	somatic_tumour	2R	17596715	ND-51L1	exon	2R	16910917	intergenic	intergenic	BND	685.8	0.08	precise	0	-
1174	bp1	A373R1	somatic_tumour	2R	16915185	intergenic	intergenic	2L	2497249	oaf	3UTR	TRA	14417.9	0.1	precise	0	-
1174	bp2	A373R1	somatic_tumour	2L	2497249	oaf	3UTR	2R	16915185	intergenic	intergenic	TRA	14417.9	0.1	precise	0	-
1184	bp1	A373R1	somatic_tumour	2R	17198000	intergenic	intergenic	2L	5449461	intergenic	intergenic	TRA	11748.5	0.22	precise	0	-
1184	bp2	A373R1	somatic_tumour	2L	5449461	intergenic	intergenic	2R	17198000	intergenic	intergenic	TRA	11748.5	0.22	precise	0	-
1190	bp1	A373R1	somatic_tumour	2R	17341008	mbl	intron	X	315197	Or1a	exon_1	TRA	17025.8	0.16	precise	0	-
1190	bp2	A373R1	somatic_tumour	X	315197	Or1a	exon_1	2R	17341008	mbl	intron	TRA	17025.8	0.16	precise	0	-
1191	bp1	A373R1	somatic_tumour	2R	17401491	CG10939	intron	X	12909442	Brms1	5UTR	COMPLEX_TRA	4492.0	0.33	precise	0	-
1191	bp2	A373R1	somatic_tumour	X	12909442	Brms1	5UTR	2R	17401491	CG10939	intron	COMPLEX_TRA	4492.0	0.33	precise	0	-
1200	bp1	A373R1	somatic_tumour	2R	17661491	CCHa1-R	intron	2R	25068965	intergenic	intergenic	BND	7407.5	0.15	precise	0	-
1200	bp2	A373R1	somatic_tumour	2R	25068965	intergenic	intergenic	2R	17661491	CCHa1-R	intron	BND	7407.5	0.15	precise	0	-
1217	bp1	A373R1	somatic_tumour	2R	18312878	sbb	intron	3R	25759290	LpR1	intron	TRA	7446.4	0.11	precise	0	-
1217	bp2	A373R1	somatic_tumour	3R	25759290	LpR1	intron	2R	18312878	sbb	intron	TRA	7446.4	0.11	precise	0	-
1221	bp1	A373R1	somatic_tumour	2R	18338896	sbb	intron	3L	20760798	intergenic	intergenic	TRA	2421.9	0.13	precise	0	-
1221	bp2	A373R1	somatic_tumour	3L	20760798	intergenic	intergenic	2R	18338896	sbb	intron	TRA	2421.9	0.13	precise	0	-
1240	bp1	A373R1	somatic_tumour	2R	18795550	MFS15	exon_3	2R	18811470	CG15096	intron	DEL	15.9	0.29	imprecise	0	-
1240	bp2	A373R1	somatic_tumour	2R	18811470	CG15096	intron	2R	18795550	MFS15	exon_3	DEL	15.9	0.29	imprecise	0	-
1245	bp1	A373R1	somatic_tumour	2R	18978791	CG18605	exon	2R	24902529	NaCP60E	intron	BND	5923.7	0.07	precise	0	-
1245	bp2	A373R1	somatic_tumour	2R	24902529	NaCP60E	intron	2R	18978791	CG18605	exon	BND	5923.7	0.07	precise	0	-
1248	bp1	A373R1	somatic_tumour	2R	19027450	5-HT1B	intron	3L	20547762	intergenic	intergenic	TRA	1520.3	0.11	precise	0	-
1248	bp2	A373R1	somatic_tumour	3L	20547762	intergenic	intergenic	2R	19027450	5-HT1B	intron	TRA	1520.3	0.11	precise	0	-
1251	bp1	A373R1	somatic_tumour	2R	19101533	5-HT1A	intron	2L	1111688	CG14339	exon_5	TRA	17989.8	0.1	precise	0	-
1251	bp2	A373R1	somatic_tumour	2L	1111688	CG14339	exon_5	2R	19101533	5-HT1A	intron	TRA	17989.8	0.1	precise	0	-
1256	bp1	A373R1	somatic_tumour	2R	19343637	fest	exon_5	3L	4112584	Ack	exon	COMPLEX_TRA	15231.0	0.11	precise	0	-
1256	bp2	A373R1	somatic_tumour	3L	4112584	Ack	exon	2R	19343637	fest	exon_5	COMPLEX_TRA	15231.0	0.11	precise	0	-
1256	bp1	A373R1	somatic_tumour	3L	4112530	Ack	exon	3L	11486067	intergenic	intergenic	COMPLEX_BND	7373.5	0.4	precise	0	-
1256	bp2	A373R1	somatic_tumour	3L	11486067	intergenic	intergenic	3L	4112530	Ack	exon	COMPLEX_BND	7373.5	0.4	precise	0	-
1261	bp1	A373R1	somatic_tumour	2R	19448114	betaTub56D	exon	3R	22435077	CG13847	intron	TRA	2987.0	0.1	precise	0	-
1261	bp2	A373R1	somatic_tumour	3R	22435077	CG13847	intron	2R	19448114	betaTub56D	exon	TRA	2987.0	0.1	precise	0	-
1266	bp1	A373R1	somatic_tumour	2R	19602576	sm	intron	3R	30433815	CG15534	intron	TRA	10831.2	0.12	precise	0	-
1266	bp2	A373R1	somatic_tumour	3R	30433815	CG15534	intron	2R	19602576	sm	intron	TRA	10831.2	0.12	precise	0	-
1268	bp1	A373R1	somatic_tumour	2R	19682809	CG34198	exon	2R	22956430	intergenic	intergenic	TANDUP	3273.6	0.12	precise	0	-
1268	bp2	A373R1	somatic_tumour	2R	22956430	intergenic	intergenic	2R	19682809	CG34198	exon	TANDUP	3273.6	0.12	precise	0	-
1277	bp1	A373R1	somatic_tumour	2R	19933462	intergenic	intergenic	3R	12788104	intergenic	intergenic	TRA	7145.4	0.12	precise	0	-
1277	bp2	A373R1	somatic_tumour	3R	12788104	intergenic	intergenic	2R	19933462	intergenic	intergenic	TRA	7145.4	0.12	precise	0	-
1284	bp1	A373R1	somatic_tumour	X	14405716	dpr8	intron	3R	7862756	CG17816	intron	TRA	6543.0	0.22	precise	0	-
1284	bp2	A373R1	somatic_tumour	3R	7862756	CG17816	intron	X	14405716	dpr8	intron	TRA	6543.0	0.22	precise	0	-
1305	bp1	A373R1	somatic_tumour	2R	20815400	intergenic	intergenic	2R	20849230	CG17999	exon_3	DUP	33.8	0.37	imprecise	0	-
1305	bp2	A373R1	somatic_tumour	2R	20849230	CG17999	exon_3	2R	20815400	intergenic	intergenic	DUP	33.8	0.37	imprecise	0	-
1312	bp1	A373R1	somatic_tumour	2R	20958142	hbn	intron	2R	22909850	nahoda	intron	BND	1951.7	0.09	precise	0	-
1312	bp2	A373R1	somatic_tumour	2R	22909850	nahoda	intron	2R	20958142	hbn	intron	BND	1951.7	0.09	precise	0	-
1317	bp1	A373R1	somatic_tumour	2R	21310963	Panx	exon	2L	14833497	intergenic	intergenic	TRA	6477.5	0.11	precise	0	-
1317	bp2	A373R1	somatic_tumour	2L	14833497	intergenic	intergenic	2R	21310963	Panx	exon	TRA	6477.5	0.11	precise	0	-
1325	bp1	A373R1	somatic_tumour	2R	21480889	Sdc	intron	3L	5922584	CG32407	5UTR	TRA	15558.3	0.09	precise	0	-
1325	bp2	A373R1	somatic_tumour	3L	5922584	CG32407	5UTR	2R	21480889	Sdc	intron	TRA	15558.3	0.09	precise	0	-
1326	bp1	A373R1	somatic_tumour	2R	21551183	Egfr	intron	3L	3575318	Eip63E	intron	TRA	17975.9	0.09	precise	0	-
1326	bp2	A373R1	somatic_tumour	3L	3575318	Eip63E	intron	2R	21551183	Egfr	intron	TRA	17975.9	0.09	precise	0	-
1329	bp1	A373R1	somatic_tumour	3L	15071695	Plp	intron	2R	18353788	sbb	intron	TRA	3282.1	0.11	precise	0	-
1329	bp2	A373R1	somatic_tumour	2R	18353788	sbb	intron	3L	15071695	Plp	intron	TRA	3282.1	0.11	precise	0	-
1331	bp1	A373R1	somatic_tumour	2R	21737255	intergenic	intergenic	3R	21535033	CR44033	ncRNA	TRA	202.2	0.15	precise	0	-
1331	bp2	A373R1	somatic_tumour	3R	21535033	CR44033	ncRNA	2R	21737255	intergenic	intergenic	TRA	202.2	0.15	precise	0	-
1335	bp1	A373R1	somatic_tumour	2R	21825423	CG13492	exon_4	3R	5772570	CG2082	intron	TRA	16052.9	0.12	precise	0	-
1335	bp2	A373R1	somatic_tumour	3R	5772570	CG2082	intron	2R	21825423	CG13492	exon_4	TRA	16052.9	0.12	precise	0	-
1348	bp1	A373R1	somatic_tumour	2R	22279289	dve	intron	3L	2031385	intergenic	intergenic	TRA	20247.9	0.09	precise	0	-
1348	bp2	A373R1	somatic_tumour	3L	2031385	intergenic	intergenic	2R	22279289	dve	intron	TRA	20247.9	0.09	precise	0	-
1350	bp1	A373R1	somatic_tumour	2R	22356658	Liprin-gamma	intron	X	9763388	intergenic	intergenic	TRA	12593.3	0.1	precise	0	-
1350	bp2	A373R1	somatic_tumour	X	9763388	intergenic	intergenic	2R	22356658	Liprin-gamma	intron	TRA	12593.3	0.1	precise	0	-
1353	bp1	A373R1	somatic_tumour	2R	22531231	px	intron	3L	3143309	CG11537	5UTR	TRA	19387.9	0.1	precise	0	-
1353	bp2	A373R1	somatic_tumour	3L	3143309	CG11537	5UTR	2R	22531231	px	intron	TRA	19387.9	0.1	precise	0	-
1361	bp1	A373R1	somatic_tumour	2R	22870861	intergenic	intergenic	2R	24111678	CG4049	exon_2	COMPLEX_BND	1240.8	0.42	precise	0	-
1361	bp2	A373R1	somatic_tumour	2R	24111678	CG4049	exon_2	2R	22870861	intergenic	intergenic	COMPLEX_BND	1240.8	0.42	precise	0	-
1363	bp1	A373R1	somatic_tumour	X	17639989	RhoGAPp190	3UTR	3R	21797560	CASK	intron	TRA	4157.6	0.16	precise	0	-
1363	bp2	A373R1	somatic_tumour	3R	21797560	CASK	intron	X	17639989	RhoGAPp190	3UTR	TRA	4157.6	0.16	precise	0	-
1398	bp1	A373R1	somatic_tumour	2R	24085160	CG16786	exon	3R	9059241	Kdm2	exon_4	TRA	15025.9	0.11	precise	0	-
1398	bp2	A373R1	somatic_tumour	3R	9059241	Kdm2	exon_4	2R	24085160	CG16786	exon	TRA	15025.9	0.11	precise	0	-
1412	bp1	A373R1	somatic_tumour	2R	24538219	ITP	intron	X	15108997	Rab3-GEF	intron	TRA	9429.2	0.12	precise	0	-
1412	bp2	A373R1	somatic_tumour	X	15108997	Rab3-GEF	intron	2R	24538219	ITP	intron	TRA	9429.2	0.12	precise	0	-
1441	bp1	A373R1	somatic_tumour	3L	310817	fwd	intron	X	8322823	nAChRalpha3	intron	TRA	8012.0	0.09	precise	0	-
1441	bp2	A373R1	somatic_tumour	X	8322823	nAChRalpha3	intron	3L	310817	fwd	intron	TRA	8012.0	0.09	precise	0	-
1448	bp1	A373R1	somatic_tumour	3L	490197	klar	exon_1	3L	13551469	CR45825	ncRNA	BND	13061.3	0.07	precise	0	-
1448	bp2	A373R1	somatic_tumour	3L	13551469	CR45825	ncRNA	3L	490197	klar	exon_1	BND	13061.3	0.07	precise	0	-
1450	bp1	A373R1	somatic_tumour	3L	505947	klar	exon_5	3R	11847116	CG6959	intron	TRA	11341.2	0.09	precise	0	-
1450	bp2	A373R1	somatic_tumour	3R	11847116	CG6959	intron	3L	505947	klar	exon_5	TRA	11341.2	0.09	precise	0	-
1460	bp1	A373R1	somatic_tumour	3L	915334	Glut1	intron	3L	9505222	path	exon_1	BND	8589.9	0.12	precise	0	-
1460	bp2	A373R1	somatic_tumour	3L	9505222	path	exon_1	3L	915334	Glut1	intron	BND	8589.9	0.12	precise	0	-
1462	bp1	A373R1	somatic_tumour	3L	984766	Glut1	intron	3R	9243881	Vps15	exon_4	TRA	8259.1	0.12	precise	0	-
1462	bp2	A373R1	somatic_tumour	3R	9243881	Vps15	exon_4	3L	984766	Glut1	intron	TRA	8259.1	0.12	precise	0	-
1464	bp1	A373R1	somatic_tumour	2R	18535166	CG10924	3UTR	3R	11836872	CG6959	intron	TRA	6698.3	0.11	precise	0	-
1464	bp2	A373R1	somatic_tumour	3R	11836872	CG6959	intron	2R	18535166	CG10924	3UTR	TRA	6698.3	0.11	precise	0	-
1474	bp1	A373R1	somatic_tumour	3R	5735366	CG2100	exon_1	3L	1274081	tfc	exon	TRA	4461.3	0.12	precise	0	-
1474	bp2	A373R1	somatic_tumour	3L	1274081	tfc	exon	3R	5735366	CG2100	exon_1	TRA	4461.3	0.12	precise	0	-
1477	bp1	A373R1	somatic_tumour	3L	1315347	Sherpa	exon_5	3R	9093169	pum	intron	TRA	7777.8	0.08	precise	0	-
1477	bp2	A373R1	somatic_tumour	3R	9093169	pum	intron	3L	1315347	Sherpa	exon_5	TRA	7777.8	0.08	precise	0	-
1480	bp1	A373R1	somatic_tumour	3L	1338603	l(3)02640	exon	2R	13081057	intergenic	intergenic	TRA	11742.5	0.25	precise	0	-
1480	bp2	A373R1	somatic_tumour	2R	13081057	intergenic	intergenic	3L	1338603	l(3)02640	exon	TRA	11742.5	0.25	precise	0	-
1486	bp1	A373R1	somatic_tumour	3L	1502986	Psa	intron	3L	19842591	kto	exon_5	BND	18339.6	0.09	precise	0	-
1486	bp2	A373R1	somatic_tumour	3L	19842591	kto	exon_5	3L	1502986	Psa	intron	BND	18339.6	0.09	precise	0	-
1487	bp1	A373R1	somatic_tumour	2R	23489427	CG43795	intron	3R	15640672	intergenic	intergenic	TRA	7848.8	0.11	precise	0	-
1487	bp2	A373R1	somatic_tumour	3R	15640672	intergenic	intergenic	2R	23489427	CG43795	intron	TRA	7848.8	0.11	precise	0	-
1492	bp1	A373R1	somatic_tumour	3L	1725880	drpr	intron	3R	21175577	SNF4Agamma	exon_3	TRA	19449.7	0.12	precise	0	-
1492	bp2	A373R1	somatic_tumour	3R	21175577	SNF4Agamma	exon_3	3L	1725880	drpr	intron	TRA	19449.7	0.12	precise	0	-
1505	bp1	A373R1	somatic_tumour	3L	2129933	zormin	intron	3L	7111671	form3	exon_3	BND	4981.7	0.07	precise	0	-
1505	bp2	A373R1	somatic_tumour	3L	7111671	form3	exon_3	3L	2129933	zormin	intron	BND	4981.7	0.07	precise	0	-
1506	bp1	A373R1	somatic_tumour	3L	2151314	zormin	intron	3R	30102468	sima	intron	TRA	27951.2	0.11	precise	0	-
1506	bp2	A373R1	somatic_tumour	3R	30102468	sima	intron	3L	2151314	zormin	intron	TRA	27951.2	0.11	precise	0	-
1508	bp1	A373R1	somatic_tumour	3L	2233996	Oseg2	exon	3L	12006234	CG6928	intron	BND	9772.2	0.07	precise	0	-
1508	bp2	A373R1	somatic_tumour	3L	12006234	CG6928	intron	3L	2233996	Oseg2	exon	BND	9772.2	0.07	precise	0	-
1513	bp1	A373R1	somatic_tumour	3L	2342967	MsR1	exon_4	X	13887823	mamo	intron	TRA	11544.9	0.13	precise	0	-
1513	bp2	A373R1	somatic_tumour	X	13887823	mamo	intron	3L	2342967	MsR1	exon_4	TRA	11544.9	0.13	precise	0	-
1522	bp1	A373R1	somatic_tumour	3L	12723299	intergenic	intergenic	3R	4776362	atms	exon_2	TRA	7946.9	0.11	precise	0	-
1522	bp2	A373R1	somatic_tumour	3R	4776362	atms	exon_2	3L	12723299	intergenic	intergenic	TRA	7946.9	0.11	precise	0	-
1527	bp1	A373R1	somatic_tumour	2R	16055147	CG8405	intron	2L	3126157	toc	exon_2	TRA	12929.0	0.07	precise	0	-
1527	bp2	A373R1	somatic_tumour	2L	3126157	toc	exon_2	2R	16055147	CG8405	intron	TRA	12929.0	0.07	precise	0	-
1527	bp1	A373R1	somatic_tumour	3L	2837594	Tet	intron	2R	16051228	CG8405	intron	TRA	13213.6	0.15	precise	0	-
1527	bp2	A373R1	somatic_tumour	2R	16051228	CG8405	intron	3L	2837594	Tet	intron	TRA	13213.6	0.15	precise	0	-
1532	bp1	A373R1	somatic_tumour	3L	3024502	aly	3UTR	3R	12038287	intergenic	intergenic	TRA	9013.8	0.1	precise	0	-
1532	bp2	A373R1	somatic_tumour	3R	12038287	intergenic	intergenic	3L	3024502	aly	3UTR	TRA	9013.8	0.1	precise	0	-
1548	bp1	A373R1	somatic_tumour	3L	3566902	Eip63E	intron	3L	12369895	Ncc69	intron	BND	8803.0	0.1	precise	0	-
1548	bp2	A373R1	somatic_tumour	3L	12369895	Ncc69	intron	3L	3566902	Eip63E	intron	BND	8803.0	0.1	precise	0	-
1567	bp1	A373R1	somatic_tumour	3L	4001017	intergenic	intergenic	3R	9722179	hyd	exon_7	COMPLEX_TRA	5721.2	0.09	precise	0	-
1567	bp2	A373R1	somatic_tumour	3R	9722179	hyd	exon_7	3L	4001017	intergenic	intergenic	COMPLEX_TRA	5721.2	0.09	precise	0	-
1567	bp1	A373R1	somatic_tumour	3R	5628549	CG31551	exon	3R	6360142	Pak	3UTR	COMPLEX_DEL	731.6	0.2	precise	0	-
1567	bp2	A373R1	somatic_tumour	3R	6360142	Pak	3UTR	3R	5628549	CG31551	exon	COMPLEX_DEL	731.6	0.2	precise	0	-
1567	bp1	A373R1	somatic_tumour	3R	9717018	hyd	exon_13	2L	4966755	Trip1	exon	COMPLEX_TRA	4750.3	0.17	precise	0	-
1567	bp2	A373R1	somatic_tumour	2L	4966755	Trip1	exon	3R	9717018	hyd	exon_13	COMPLEX_TRA	4750.3	0.17	precise	0	-
1589	bp1	A373R1	somatic_tumour	3L	4501770	NT1	3UTR	3R	30846576	intergenic	intergenic	TRA	26344.8	0.17	precise	0	-
1589	bp2	A373R1	somatic_tumour	3R	30846576	intergenic	intergenic	3L	4501770	NT1	3UTR	TRA	26344.8	0.17	precise	0	-
1608	bp1	A373R1	somatic_tumour	3L	5226964	shep	intron	2L	4992332	CG34126	3UTR	TRA	234.6	0.08	precise	0	-
1608	bp2	A373R1	somatic_tumour	2L	4992332	CG34126	3UTR	3L	5226964	shep	intron	TRA	234.6	0.08	precise	0	-
1609	bp1	A373R1	somatic_tumour	3L	5265242	shep	intron	3L	14994585	Zip71B	exon_2	BND	9729.3	0.08	precise	0	-
1609	bp2	A373R1	somatic_tumour	3L	14994585	Zip71B	exon_2	3L	5265242	shep	intron	BND	9729.3	0.08	precise	0	-
1619	bp1	A373R1	somatic_tumour	3L	5652412	intergenic	intergenic	3L	22008889	intergenic	intergenic	BND	16356.5	0.09	precise	0	-
1619	bp2	A373R1	somatic_tumour	3L	22008889	intergenic	intergenic	3L	5652412	intergenic	intergenic	BND	16356.5	0.09	precise	0	-
1628	bp1	A373R1	somatic_tumour	3L	5919793	CG10483	exon_2	X	19548572	intergenic	intergenic	TRA	13628.8	0.11	precise	0	-
1628	bp2	A373R1	somatic_tumour	X	19548572	intergenic	intergenic	3L	5919793	CG10483	exon_2	TRA	13628.8	0.11	precise	0	-
1629	bp1	A373R1	somatic_tumour	3L	5938755	CG33993	intron	3R	4100848	CG42402	intron	TRA	1837.9	0.11	precise	0	-
1629	bp2	A373R1	somatic_tumour	3R	4100848	CG42402	intron	3L	5938755	CG33993	intron	TRA	1837.9	0.11	precise	0	-
1672	bp1	A373R1	somatic_tumour	3L	6841542	intergenic	intergenic	3L	9313364	intergenic	intergenic	BND	2471.8	0.09	precise	0	-
1672	bp2	A373R1	somatic_tumour	3L	9313364	intergenic	intergenic	3L	6841542	intergenic	intergenic	BND	2471.8	0.09	precise	0	-
1679	bp1	A373R1	somatic_tumour	3L	7032044	Mp	intron	2L	15094	l(2)gl	exon_3	TRA	7016.9	0.31	precise	0	-
1679	bp2	A373R1	somatic_tumour	2L	15094	l(2)gl	exon_3	3L	7032044	Mp	intron	TRA	7016.9	0.31	precise	0	-
1693	bp1	A373R1	somatic_tumour	3L	7549091	intergenic	intergenic	3R	8122293	puc	3UTR	TRA	573.2	0.17	precise	0	-
1693	bp2	A373R1	somatic_tumour	3R	8122293	puc	3UTR	3L	7549091	intergenic	intergenic	TRA	573.2	0.17	precise	0	-
1703	bp1	A373R1	somatic_tumour	3L	7980692	nmo	5UTR	3R	4445690	CG31522	intron	TRA	3535.0	0.09	precise	0	-
1703	bp2	A373R1	somatic_tumour	3R	4445690	CG31522	intron	3L	7980692	nmo	5UTR	TRA	3535.0	0.09	precise	0	-
1706	bp1	A373R1	somatic_tumour	3L	8066967	Ect4	intron	3L	15812621	fwe	exon_5	BND	7745.7	0.07	precise	0	-
1706	bp2	A373R1	somatic_tumour	3L	15812621	fwe	exon_5	3L	8066967	Ect4	intron	BND	7745.7	0.07	precise	0	-
1726	bp1	A373R1	somatic_tumour	3L	8638919	intergenic	intergenic	3R	29319538	Cnx99A	5UTR	TRA	20680.6	0.1	precise	0	-
1726	bp2	A373R1	somatic_tumour	3R	29319538	Cnx99A	5UTR	3L	8638919	intergenic	intergenic	TRA	20680.6	0.1	precise	0	-
1729	bp1	A373R1	somatic_tumour	3L	8693576	intergenic	intergenic	3R	8439419	CG45263	intron	TRA	254.2	0.1	precise	0	-
1729	bp2	A373R1	somatic_tumour	3R	8439419	CG45263	intron	3L	8693576	intergenic	intergenic	TRA	254.2	0.1	precise	0	-
1761	bp1	A373R1	somatic_tumour	3L	9731434	CG6749	exon	2L	2653329	Prosbeta4R1	exon	TRA	7078.1	0.1	precise	0	-
1761	bp2	A373R1	somatic_tumour	2L	2653329	Prosbeta4R1	exon	3L	9731434	CG6749	exon	TRA	7078.1	0.1	precise	0	-
1769	bp1	A373R1	somatic_tumour	3L	9844027	RasGAP1	exon_2	3R	11670459	CG42327	exon_2	TRA	1826.4	0.07	precise	0	-
1769	bp2	A373R1	somatic_tumour	3R	11670459	CG42327	exon_2	3L	9844027	RasGAP1	exon_2	TRA	1826.4	0.07	precise	0	-
1771	bp1	A373R1	somatic_tumour	3L	9869262	CG8108	exon_6	3R	26400299	intergenic	intergenic	TRA	16531.0	0.1	precise	0	-
1771	bp2	A373R1	somatic_tumour	3R	26400299	intergenic	intergenic	3L	9869262	CG8108	exon_6	TRA	16531.0	0.1	precise	0	-
1785	bp1	A373R1	somatic_tumour	2R	20932052	Rx	intron	3R	12891609	intergenic	intergenic	COMPLEX_TRA	8040.4	0.18	precise	0	-
1785	bp2	A373R1	somatic_tumour	3R	12891609	intergenic	intergenic	2R	20932052	Rx	intron	COMPLEX_TRA	8040.4	0.18	precise	0	-
1785	bp1	A373R1	somatic_tumour	3L	10282443	intergenic	intergenic	3R	29457244	Ptp99A	intron	COMPLEX_TRA	19174.8	0.11	precise	0	-
1785	bp2	A373R1	somatic_tumour	3R	29457244	Ptp99A	intron	3L	10282443	intergenic	intergenic	COMPLEX_TRA	19174.8	0.11	precise	0	-
1785	bp1	A373R1	somatic_tumour	3L	10339599	CR46006	ncRNA	3R	7823747	CG34384	intron	COMPLEX_TRA	2515.9	0.1	precise	0	-
1785	bp2	A373R1	somatic_tumour	3R	7823747	CG34384	intron	3L	10339599	CR46006	ncRNA	COMPLEX_TRA	2515.9	0.1	precise	0	-
1785	bp1	A373R1	somatic_tumour	3L	10339610	CR46006	ncRNA	3R	7823747	CG34384	intron	COMPLEX_TRA	2515.9	0.09	precise	0	-
1785	bp2	A373R1	somatic_tumour	3R	7823747	CG34384	intron	3L	10339610	CR46006	ncRNA	COMPLEX_TRA	2515.9	0.09	precise	0	-
1785	bp1	A373R1	somatic_tumour	3R	29457244	Ptp99A	intron	3L	10282443	intergenic	intergenic	COMPLEX_TRA	19174.8	0.11	precise	0	-
1785	bp2	A373R1	somatic_tumour	3L	10282443	intergenic	intergenic	3R	29457244	Ptp99A	intron	COMPLEX_TRA	19174.8	0.11	precise	0	-
1790	bp1	A373R1	somatic_tumour	3L	10453260	intergenic	intergenic	X	16685026	Sep4	3UTR	TRA	6231.8	0.15	precise	0	-
1790	bp2	A373R1	somatic_tumour	X	16685026	Sep4	3UTR	3L	10453260	intergenic	intergenic	TRA	6231.8	0.15	precise	0	-
1795	bp1	A373R1	somatic_tumour	3L	10549890	Rbfox1	intron	2L	19574969	spi	intron	TRA	9025.1	0.11	precise	0	-
1795	bp2	A373R1	somatic_tumour	2L	19574969	spi	intron	3L	10549890	Rbfox1	intron	TRA	9025.1	0.11	precise	0	-
1812	bp1	A373R1	somatic_tumour	3L	11163228	CG32082	3UTR	3R	9917754	Glut4EF	intron	TRA	1245.5	0.15	precise	0	-
1812	bp2	A373R1	somatic_tumour	3R	9917754	Glut4EF	intron	3L	11163228	CG32082	3UTR	TRA	1245.5	0.15	precise	0	-
1813	bp1	A373R1	somatic_tumour	3L	11213687	CG7600	exon	X	15951538	mmd	exon_22	TRA	4737.9	0.18	precise	0	-
1813	bp2	A373R1	somatic_tumour	X	15951538	mmd	exon_22	3L	11213687	CG7600	exon	TRA	4737.9	0.18	precise	0	-
1815	bp1	A373R1	somatic_tumour	3L	11403831	intergenic	intergenic	X	11299479	CG44422	intron	COMPLEX_TRA	104.4	0.12	precise	0	-
1815	bp2	A373R1	somatic_tumour	X	11299479	CG44422	intron	3L	11403831	intergenic	intergenic	COMPLEX_TRA	104.4	0.12	precise	0	-
1816	bp1	A373R1	somatic_tumour	3L	11259935	intergenic	intergenic	3R	26733727	intergenic	intergenic	TRA	15473.8	0.09	precise	0	-
1816	bp2	A373R1	somatic_tumour	3R	26733727	intergenic	intergenic	3L	11259935	intergenic	intergenic	TRA	15473.8	0.09	precise	0	-
1831	bp1	A373R1	somatic_tumour	3L	11758142	CG6024	intron	3R	17776760	CG43102	intron	TRA	6018.6	0.1	precise	0	-
1831	bp2	A373R1	somatic_tumour	3R	17776760	CG43102	intron	3L	11758142	CG6024	intron	TRA	6018.6	0.1	precise	0	-
1832	bp1	A373R1	somatic_tumour	3L	11762048	CG6024	intron	3R	17762643	TyrR	exon_1	TRA	6000.6	0.09	precise	0	-
1832	bp2	A373R1	somatic_tumour	3R	17762643	TyrR	exon_1	3L	11762048	CG6024	intron	TRA	6000.6	0.09	precise	0	-
1834	bp1	A373R1	somatic_tumour	3L	11917317	CG44837	intron	2L	15964921	intergenic	intergenic	TRA	4047.6	0.1	precise	0	-
1834	bp2	A373R1	somatic_tumour	2L	15964921	intergenic	intergenic	3L	11917317	CG44837	intron	TRA	4047.6	0.1	precise	0	-
1870	bp1	A373R1	somatic_tumour	3L	13116480	trn	exon	2R	15685883	CG30082	exon_1	TRA	2569.4	0.16	precise	0	-
1870	bp2	A373R1	somatic_tumour	2R	15685883	CG30082	exon_1	3L	13116480	trn	exon	TRA	2569.4	0.16	precise	0	-
1885	bp1	A373R1	somatic_tumour	3L	13665166	bru3	intron	3R	3520032	Parp	intron	TRA	10145.1	0.09	precise	0	-
1885	bp2	A373R1	somatic_tumour	3R	3520032	Parp	intron	3L	13665166	bru3	intron	TRA	10145.1	0.09	precise	0	-
1913	bp1	A373R1	somatic_tumour	3R	15663172	intergenic	intergenic	4	397823	intergenic	intergenic	TRA	15265.3	0.11	precise	0	-
1913	bp2	A373R1	somatic_tumour	4	397823	intergenic	intergenic	3R	15663172	intergenic	intergenic	TRA	15265.3	0.11	precise	0	-
1916	bp1	A373R1	somatic_tumour	3L	14918762	DCX-EMAP	intron	2R	21756112	intergenic	intergenic	TRA	6837.3	0.1	precise	0	-
1916	bp2	A373R1	somatic_tumour	2R	21756112	intergenic	intergenic	3L	14918762	DCX-EMAP	intron	TRA	6837.3	0.1	precise	0	-
1926	bp1	A373R1	somatic_tumour	3L	15328350	intergenic	intergenic	2L	21172823	Acon	3UTR	TRA	5844.5	0.27	precise	0	-
1926	bp2	A373R1	somatic_tumour	2L	21172823	Acon	3UTR	3L	15328350	intergenic	intergenic	TRA	5844.5	0.27	precise	0	-
1928	bp1	A373R1	somatic_tumour	3L	15461278	intergenic	intergenic	2L	17877675	intergenic	intergenic	TRA	2416.4	0.12	precise	0	-
1928	bp2	A373R1	somatic_tumour	2L	17877675	intergenic	intergenic	3L	15461278	intergenic	intergenic	TRA	2416.4	0.12	precise	0	-
1931	bp1	A373R1	somatic_tumour	3L	15536381	CrebA	5UTR	3L	18522851	intergenic	intergenic	BND	2986.5	0.07	precise	0	-
1931	bp2	A373R1	somatic_tumour	3L	18522851	intergenic	intergenic	3L	15536381	CrebA	5UTR	BND	2986.5	0.07	precise	0	-
1938	bp1	A373R1	somatic_tumour	3L	15957251	elgi	exon_3	2R	10368274	CG42732	intron	TRA	5589.0	0.27	precise	0	-
1938	bp2	A373R1	somatic_tumour	2R	10368274	CG42732	intron	3L	15957251	elgi	exon_3	TRA	5589.0	0.27	precise	0	-
1946	bp1	A373R1	somatic_tumour	3L	16378404	roq	intron	3R	17829423	tinc	intron	TRA	1451.0	0.11	precise	0	-
1946	bp2	A373R1	somatic_tumour	3R	17829423	tinc	intron	3L	16378404	roq	intron	TRA	1451.0	0.11	precise	0	-
1950	bp1	A373R1	somatic_tumour	3L	16515633	CG43373	intron	3R	23429985	CG4374	intron	TRA	6914.4	0.29	precise	0	-
1950	bp2	A373R1	somatic_tumour	3R	23429985	CG4374	intron	3L	16515633	CG43373	intron	TRA	6914.4	0.29	precise	0	-
1955	bp1	A373R1	somatic_tumour	3L	16669222	intergenic	intergenic	X	1733289	intergenic	intergenic	TRA	14935.9	0.18	precise	0	-
1955	bp2	A373R1	somatic_tumour	X	1733289	intergenic	intergenic	3L	16669222	intergenic	intergenic	TRA	14935.9	0.18	precise	0	-
1956	bp1	A373R1	somatic_tumour	3L	16733509	intergenic	intergenic	2R	16469695	intergenic	intergenic	TRA	263.8	0.08	precise	0	-
1956	bp2	A373R1	somatic_tumour	2R	16469695	intergenic	intergenic	3L	16733509	intergenic	intergenic	TRA	263.8	0.08	precise	0	-
1969	bp1	A373R1	somatic_tumour	3L	17223570	Rbp6	intron	3R	13134835	CR45109	ncRNA	TRA	4088.7	0.1	precise	0	-
1969	bp2	A373R1	somatic_tumour	3R	13134835	CR45109	ncRNA	3L	17223570	Rbp6	intron	TRA	4088.7	0.1	precise	0	-
1972	bp1	A373R1	somatic_tumour	3L	17413610	blot	intron	2L	4003209	intergenic	intergenic	TRA	13410.4	0.08	precise	0	-
1972	bp2	A373R1	somatic_tumour	2L	4003209	intergenic	intergenic	3L	17413610	blot	intron	TRA	13410.4	0.08	precise	0	-
1976	bp1	A373R1	somatic_tumour	3L	17672493	CG34251	intron	3R	11143854	intergenic	intergenic	TRA	6528.6	0.09	precise	0	-
1976	bp2	A373R1	somatic_tumour	3R	11143854	intergenic	intergenic	3L	17672493	CG34251	intron	TRA	6528.6	0.09	precise	0	-
2005	bp1	A373R1	somatic_tumour	3L	18755343	ftz-f1	exon_5	X	2543470	trol	intron	TRA	16211.9	0.1	precise	0	-
2005	bp2	A373R1	somatic_tumour	X	2543470	trol	intron	3L	18755343	ftz-f1	exon_5	TRA	16211.9	0.1	precise	0	-
2015	bp1	A373R1	somatic_tumour	3L	19175287	fz2	intron	3R	6537214	dpr11	intron	TRA	12638.1	0.13	precise	0	-
2015	bp2	A373R1	somatic_tumour	3R	6537214	dpr11	intron	3L	19175287	fz2	intron	TRA	12638.1	0.13	precise	0	-
2016	bp1	A373R1	somatic_tumour	2L	18935742	ssp3	intron	X	5594873	Vsx1	exon_1	TRA	13340.9	0.15	precise	0	-
2016	bp2	A373R1	somatic_tumour	X	5594873	Vsx1	exon_1	2L	18935742	ssp3	intron	TRA	13340.9	0.15	precise	0	-
2019	bp1	A373R1	somatic_tumour	3L	19461262	intergenic	intergenic	3R	26184705	CG31323	3UTR	TRA	6723.4	0.12	precise	0	-
2019	bp2	A373R1	somatic_tumour	3R	26184705	CG31323	3UTR	3L	19461262	intergenic	intergenic	TRA	6723.4	0.12	precise	0	-
2043	bp1	A373R1	somatic_tumour	3L	20235301	CG17233	exon_6	2L	13213687	kek4	exon_2	TRA	7021.6	0.07	precise	0	-
2043	bp2	A373R1	somatic_tumour	2L	13213687	kek4	exon_2	3L	20235301	CG17233	exon_6	TRA	7021.6	0.07	precise	0	-
2044	bp1	A373R1	somatic_tumour	3L	20515625	CG5059	intron	Y	1113653	intergenic	intergenic	TRA	19402.0	0.16	precise	0	-
2044	bp2	A373R1	somatic_tumour	Y	1113653	intergenic	intergenic	3L	20515625	CG5059	intron	TRA	19402.0	0.16	precise	0	-
2056	bp1	A373R1	somatic_tumour	3L	21187911	CG42337	intron	3R	16508180	CG42342	intron	TRA	4679.7	0.1	precise	0	-
2056	bp2	A373R1	somatic_tumour	3R	16508180	CG42342	intron	3L	21187911	CG42337	intron	TRA	4679.7	0.1	precise	0	-
2079	bp1	A373R1	somatic_tumour	3L	21886023	CR43878	ncRNA	3R	31405444	Gprk2	exon_1	TRA	9519.4	0.12	precise	0	-
2079	bp2	A373R1	somatic_tumour	3R	31405444	Gprk2	exon_1	3L	21886023	CR43878	ncRNA	TRA	9519.4	0.12	precise	0	-
2082	bp1	A373R1	somatic_tumour	3L	21989678	intergenic	intergenic	X	7894615	p115	exon	TRA	14095.1	0.12	precise	0	-
2082	bp2	A373R1	somatic_tumour	X	7894615	p115	exon	3L	21989678	intergenic	intergenic	TRA	14095.1	0.12	precise	0	-
2084	bp1	A373R1	somatic_tumour	3L	22077625	intergenic	intergenic	2R	19333276	CG34045	intron	TRA	2744.3	0.12	precise	0	-
2084	bp2	A373R1	somatic_tumour	2R	19333276	CG34045	intron	3L	22077625	intergenic	intergenic	TRA	2744.3	0.12	precise	0	-
2132	bp1	A373R1	somatic_tumour	3L	26724963	intergenic	intergenic	3R	28984135	intergenic	intergenic	TRA	2259.2	0.13	precise	0	-
2132	bp2	A373R1	somatic_tumour	3R	28984135	intergenic	intergenic	3L	26724963	intergenic	intergenic	TRA	2259.2	0.13	precise	0	-
2136	bp1	A373R1	somatic_tumour	3R	8774378	Pif1B	3UTR	2L	15436924	intergenic	intergenic	TRA	6662.5	0.11	precise	0	-
2136	bp2	A373R1	somatic_tumour	2L	15436924	intergenic	intergenic	3R	8774378	Pif1B	3UTR	TRA	6662.5	0.11	precise	0	-
2144	bp1	A373R1	somatic_tumour	3R	5321214	mtd	intron	Tomelloso	42030	intergenic	intergenic	TRA	5279.2	0.32	precise	0	-
2144	bp2	A373R1	somatic_tumour	Tomelloso	42030	intergenic	intergenic	3R	5321214	mtd	intron	TRA	5279.2	0.32	precise	0	-
2144	bp1	A373R1	somatic_tumour	3R	27023522	RYa-R	intron	Tomelloso	37708	intergenic	intergenic	TRA	26985.8	0.17	precise	0	-
2144	bp2	A373R1	somatic_tumour	Tomelloso	37708	intergenic	intergenic	3R	27023522	RYa-R	intron	TRA	26985.8	0.17	precise	0	-
2147	bp1	A373R1	somatic_tumour	3R	2495844	Myo81F	intron	3R	4817494	CG1126	exon	BND	2321.7	0.07	precise	0	-
2147	bp2	A373R1	somatic_tumour	3R	4817494	CG1126	exon	3R	2495844	Myo81F	intron	BND	2321.7	0.07	precise	0	-
2148	bp1	A373R1	somatic_tumour	3R	2877391	Pzl	intron	X	3167258	N	exon_6	TRA	289.9	0.14	precise	0	-
2148	bp2	A373R1	somatic_tumour	X	3167258	N	exon_6	3R	2877391	Pzl	intron	TRA	289.9	0.14	precise	0	-
2154	bp1	A373R1	somatic_tumour	3R	3324730	spok	intron	3R	18155284	intergenic	intergenic	BND	14830.6	0.09	precise	0	-
2154	bp2	A373R1	somatic_tumour	3R	18155284	intergenic	intergenic	3R	3324730	spok	intron	BND	14830.6	0.09	precise	0	-
2158	bp1	A373R1	somatic_tumour	3R	3743466	Tim17b	intron	X	1929859	CG11596	exon	TRA	1813.6	0.14	precise	0	-
2158	bp2	A373R1	somatic_tumour	X	1929859	CG11596	exon	3R	3743466	Tim17b	intron	TRA	1813.6	0.14	precise	0	-
2166	bp1	A373R1	somatic_tumour	3R	4492825	CG34357	3UTR	3L	23785097	CG43968	exon	TRA	19292.3	0.12	precise	0	-
2166	bp2	A373R1	somatic_tumour	3L	23785097	CG43968	exon	3R	4492825	CG34357	3UTR	TRA	19292.3	0.12	precise	0	-
2171	bp1	A373R1	somatic_tumour	3R	4527497	CG34357	intron	3L	19704476	serp	intron	TRA	15177.0	0.15	precise	0	-
2171	bp2	A373R1	somatic_tumour	3L	19704476	serp	intron	3R	4527497	CG34357	intron	TRA	15177.0	0.15	precise	0	-
2178	bp1	A373R1	somatic_tumour	3R	4698474	CG43427	intron	3R	28674525	intergenic	intergenic	COMPLEX_BND	23976.1	0.17	precise	0	-
2178	bp2	A373R1	somatic_tumour	3R	28674525	intergenic	intergenic	3R	4698474	CG43427	intron	COMPLEX_BND	23976.1	0.17	precise	0	-
2187	bp1	A373R1	somatic_tumour	3R	5132850	intergenic	intergenic	2L	8869424	intergenic	intergenic	TRA	3736.6	0.1	precise	0	-
2187	bp2	A373R1	somatic_tumour	2L	8869424	intergenic	intergenic	3R	5132850	intergenic	intergenic	TRA	3736.6	0.1	precise	0	-
2197	bp1	A373R1	somatic_tumour	3R	5528084	Itp-r83A	exon_3	2R	21689196	CG10307	exon_1	TRA	16161.1	0.08	precise	0	-
2197	bp2	A373R1	somatic_tumour	2R	21689196	CG10307	exon_1	3R	5528084	Itp-r83A	exon_3	TRA	16161.1	0.08	precise	0	-
2232	bp1	A373R1	somatic_tumour	2L	929585	CG4341	intron	Tomelloso	110406	intergenic	intergenic	TRA	819.2	0.18	precise	0	-
2232	bp2	A373R1	somatic_tumour	Tomelloso	110406	intergenic	intergenic	2L	929585	CG4341	intron	TRA	819.2	0.18	precise	0	-
2258	bp1	A373R1	somatic_tumour	3R	7303920	rn	intron	2L	6657755	CG31636	5UTR	TRA	646.2	0.1	precise	0	-
2258	bp2	A373R1	somatic_tumour	2L	6657755	CG31636	5UTR	3R	7303920	rn	intron	TRA	646.2	0.1	precise	0	-
2274	bp1	A373R1	somatic_tumour	3R	7814495	CG34384	5UTR	X	1078413	CG3655	intron	TRA	6736.1	0.1	precise	0	-
2274	bp2	A373R1	somatic_tumour	X	1078413	CG3655	intron	3R	7814495	CG34384	5UTR	TRA	6736.1	0.1	precise	0	-
2281	bp1	A373R1	somatic_tumour	3R	8036115	unc-45	exon	3L	15094480	sstn	exon_1	TRA	7058.4	0.09	precise	0	-
2281	bp2	A373R1	somatic_tumour	3L	15094480	sstn	exon_1	3R	8036115	unc-45	exon	TRA	7058.4	0.09	precise	0	-
2284	bp1	A373R1	somatic_tumour	3R	8131210	intergenic	intergenic	X	2306420	Raf	intron	TRA	5824.8	0.13	precise	0	-
2284	bp2	A373R1	somatic_tumour	X	2306420	Raf	intron	3R	8131210	intergenic	intergenic	TRA	5824.8	0.13	precise	0	-
2285	bp1	A373R1	somatic_tumour	3R	8146531	intergenic	intergenic	3R	23340339	pnt	exon_2	BND	15193.8	0.09	precise	0	-
2285	bp2	A373R1	somatic_tumour	3R	23340339	pnt	exon_2	3R	8146531	intergenic	intergenic	BND	15193.8	0.09	precise	0	-
2296	bp1	A373R1	somatic_tumour	3R	8583155	5-HT2B	intron	3L	12516644	tral	exon_2	TRA	3933.5	0.09	precise	0	-
2296	bp2	A373R1	somatic_tumour	3L	12516644	tral	exon_2	3R	8583155	5-HT2B	intron	TRA	3933.5	0.09	precise	0	-
2307	bp1	A373R1	somatic_tumour	3R	8860391	pyd	intron	2R	11071276	luna	intron	TRA	2210.9	0.11	precise	0	-
2307	bp2	A373R1	somatic_tumour	2R	11071276	luna	intron	3R	8860391	pyd	intron	TRA	2210.9	0.11	precise	0	-
2308	bp1	A373R1	somatic_tumour	3R	8879051	pyd	intron	2L	23025980	intergenic	intergenic	TRA	14146.9	0.14	precise	0	-
2308	bp2	A373R1	somatic_tumour	2L	23025980	intergenic	intergenic	3R	8879051	pyd	intron	TRA	14146.9	0.14	precise	0	-
2321	bp1	A373R1	somatic_tumour	3R	9314343	CG8861	intron	3R	24292891	CG6364	exon_5	BND	14978.5	0.07	precise	0	-
2321	bp2	A373R1	somatic_tumour	3R	24292891	CG6364	exon_5	3R	9314343	CG8861	intron	BND	14978.5	0.07	precise	0	-
2333	bp1	A373R1	somatic_tumour	3R	9503210	intergenic	intergenic	3R	9630428	Calr	intron	BND	127.2	0.09	precise	0	-
2333	bp2	A373R1	somatic_tumour	3R	9630428	Calr	intron	3R	9503210	intergenic	intergenic	BND	127.2	0.09	precise	0	-
2334	bp1	A373R1	somatic_tumour	3R	9544827	mura	intron	2R	15985547	Strn-Mlck	exon_3	TRA	6440.7	0.1	precise	0	-
2334	bp2	A373R1	somatic_tumour	2R	15985547	Strn-Mlck	exon_3	3R	9544827	mura	intron	TRA	6440.7	0.1	precise	0	-
2344	bp1	A373R1	somatic_tumour	3R	10078173	intergenic	intergenic	2L	12871782	intergenic	intergenic	COMPLEX_TRA	2793.6	0.3	precise	0	-
2344	bp2	A373R1	somatic_tumour	2L	12871782	intergenic	intergenic	3R	10078173	intergenic	intergenic	COMPLEX_TRA	2793.6	0.3	precise	0	-
2350	bp1	A373R1	somatic_tumour	3R	10366352	Rfx	intron	2L	8552903	Sema-1a	intron	TRA	1813.4	0.13	precise	0	-
2350	bp2	A373R1	somatic_tumour	2L	8552903	Sema-1a	intron	3R	10366352	Rfx	intron	TRA	1813.4	0.13	precise	0	-
2352	bp1	A373R1	somatic_tumour	3R	10391617	cwo	intron	2R	10222646	CG12912	intron	TRA	169.0	0.11	precise	0	-
2352	bp2	A373R1	somatic_tumour	2R	10222646	CG12912	intron	3R	10391617	cwo	intron	TRA	169.0	0.11	precise	0	-
2377	bp1	A373R1	somatic_tumour	3R	18495869	fru	intron	3L	4009987	intergenic	intergenic	TRA	14485.9	0.11	precise	0	-
2377	bp2	A373R1	somatic_tumour	3L	4009987	intergenic	intergenic	3R	18495869	fru	intron	TRA	14485.9	0.11	precise	0	-
2381	bp1	A373R1	somatic_tumour	3R	11371083	pros	intron	3L	21265650	Eip78C	3UTR	TRA	9894.6	0.23	precise	0	-
2381	bp2	A373R1	somatic_tumour	3L	21265650	Eip78C	3UTR	3R	11371083	pros	intron	TRA	9894.6	0.23	precise	0	-
2405	bp1	A373R1	somatic_tumour	3R	11978865	CG18547	intron	2L	18647011	MESR3	intron	TRA	6668.1	0.09	precise	0	-
2405	bp2	A373R1	somatic_tumour	2L	18647011	MESR3	intron	3R	11978865	CG18547	intron	TRA	6668.1	0.09	precise	0	-
2411	bp1	A373R1	somatic_tumour	X	14825192	rut	intron	2L	9684163	Pka-C1	3UTR	TRA	5141.0	0.13	precise	0	-
2411	bp2	A373R1	somatic_tumour	2L	9684163	Pka-C1	3UTR	X	14825192	rut	intron	TRA	5141.0	0.13	precise	0	-
2425	bp1	A373R1	somatic_tumour	2R	20326536	MED8	exon	2L	15133112	intergenic	intergenic	TRA	5193.4	0.1	precise	0	-
2425	bp2	A373R1	somatic_tumour	2L	15133112	intergenic	intergenic	2R	20326536	MED8	exon	TRA	5193.4	0.1	precise	0	-
2440	bp1	A373R1	somatic_tumour	3R	13456855	CR17025	ncRNA	Tomelloso	83396	intergenic	intergenic	TRA	13373.5	0.57	precise	0	-
2440	bp2	A373R1	somatic_tumour	Tomelloso	83396	intergenic	intergenic	3R	13456855	CR17025	ncRNA	TRA	13373.5	0.57	precise	0	-
2448	bp1	A373R1	somatic_tumour	3R	13603320	intergenic	intergenic	3L	14322590	CR45025	exon_2	TRA	719.3	0.1	precise	0	-
2448	bp2	A373R1	somatic_tumour	3L	14322590	CR45025	exon_2	3R	13603320	intergenic	intergenic	TRA	719.3	0.1	precise	0	-
2462	bp1	A373R1	somatic_tumour	3R	14097309	CG9920	3UTR	X	12236550	Ten-a	intron	TRA	1860.8	0.14	precise	0	-
2462	bp2	A373R1	somatic_tumour	X	12236550	Ten-a	intron	3R	14097309	CG9920	3UTR	TRA	1860.8	0.14	precise	0	-
2469	bp1	A373R1	somatic_tumour	3R	14487592	intergenic	intergenic	3R	26073116	intergenic	intergenic	TANDUP	11585.5	0.13	precise	0	-
2469	bp2	A373R1	somatic_tumour	3R	26073116	intergenic	intergenic	3R	14487592	intergenic	intergenic	TANDUP	11585.5	0.13	precise	0	-
2470	bp1	A373R1	somatic_tumour	3R	14517981	Pde6	exon_10	X	1052238	CG14629	exon	TRA	13465.7	0.14	precise	0	-
2470	bp2	A373R1	somatic_tumour	X	1052238	CG14629	exon	3R	14517981	Pde6	exon_10	TRA	13465.7	0.14	precise	0	-
2499	bp1	A373R1	somatic_tumour	3R	15632832	intergenic	intergenic	3R	22865891	intergenic	intergenic	BND	7233.1	0.17	precise	0	-
2499	bp2	A373R1	somatic_tumour	3R	22865891	intergenic	intergenic	3R	15632832	intergenic	intergenic	BND	7233.1	0.17	precise	0	-
2510	bp1	A373R1	somatic_tumour	2L	8093153	Bsg	intron	X	17811386	OdsH	intron	TRA	9718.2	0.23	precise	0	-
2510	bp2	A373R1	somatic_tumour	X	17811386	OdsH	intron	2L	8093153	Bsg	intron	TRA	9718.2	0.23	precise	0	-
2510	bp1	A373R1	somatic_tumour	3R	15965831	Rbf2	exon	2L	8095215	Bsg	intron	TRA	7870.6	0.14	precise	0	-
2510	bp2	A373R1	somatic_tumour	2L	8095215	Bsg	intron	3R	15965831	Rbf2	exon	TRA	7870.6	0.14	precise	0	-
2513	bp1	A373R1	somatic_tumour	3R	16107173	intergenic	intergenic	4	1079805	Actbeta	intron	TRA	15027.4	0.12	precise	0	-
2513	bp2	A373R1	somatic_tumour	4	1079805	Actbeta	intron	3R	16107173	intergenic	intergenic	TRA	15027.4	0.12	precise	0	-
2514	bp1	A373R1	somatic_tumour	3R	16137027	Sb	intron	3R	17537987	l(3)07882	exon_2	BND	1401.0	0.08	precise	0	-
2514	bp2	A373R1	somatic_tumour	3R	17537987	l(3)07882	exon_2	3R	16137027	Sb	intron	BND	1401.0	0.08	precise	0	-
2535	bp1	A373R1	somatic_tumour	3R	16837724	iab-8	ncRNA	2R	16346437	wcd	exon	TRA	491.3	0.12	precise	0	-
2535	bp2	A373R1	somatic_tumour	2R	16346437	wcd	exon	3R	16837724	iab-8	ncRNA	TRA	491.3	0.12	precise	0	-
2544	bp1	A373R1	somatic_tumour	3R	17224933	intergenic	intergenic	X	16333798	Dsp1	exon_1	TRA	891.1	0.17	precise	0	-
2544	bp2	A373R1	somatic_tumour	X	16333798	Dsp1	exon_1	3R	17224933	intergenic	intergenic	TRA	891.1	0.17	precise	0	-
2548	bp1	A373R1	somatic_tumour	3R	17314237	intergenic	intergenic	3L	15862703	pHCl	intron	TRA	1451.5	0.1	precise	0	-
2548	bp2	A373R1	somatic_tumour	3L	15862703	pHCl	intron	3R	17314237	intergenic	intergenic	TRA	1451.5	0.1	precise	0	-
2570	bp1	A373R1	somatic_tumour	3R	17965477	cpo	intron	3R	19184464	CG31475	intron	BND	1219.0	0.08	precise	0	-
2570	bp2	A373R1	somatic_tumour	3R	19184464	CG31475	intron	3R	17965477	cpo	intron	BND	1219.0	0.08	precise	0	-
2575	bp1	A373R1	somatic_tumour	2L	754880	GABA-B-R3	intron	2R	9245145	hig	intron	TRA	8490.3	0.1	precise	0	-
2575	bp2	A373R1	somatic_tumour	2R	9245145	hig	intron	2L	754880	GABA-B-R3	intron	TRA	8490.3	0.1	precise	0	-
2601	bp1	A373R1	somatic_tumour	3R	19248035	CG5217	5UTR	3L	21214277	CG10508	exon_2	TRA	1966.2	0.1	precise	0	-
2601	bp2	A373R1	somatic_tumour	3L	21214277	CG10508	exon_2	3R	19248035	CG5217	5UTR	TRA	1966.2	0.1	precise	0	-
2607	bp1	A373R1	somatic_tumour	3R	19415605	CG31221	intron	3R	24504160	intergenic	intergenic	BND	5088.6	0.1	precise	0	-
2607	bp2	A373R1	somatic_tumour	3R	24504160	intergenic	intergenic	3R	19415605	CG31221	intron	BND	5088.6	0.1	precise	0	-
2642	bp1	A373R1	somatic_tumour	3R	20723488	intergenic	intergenic	3R	27111159	gb	intron	BND	6387.7	0.08	precise	0	-
2642	bp2	A373R1	somatic_tumour	3R	27111159	gb	intron	3R	20723488	intergenic	intergenic	BND	6387.7	0.08	precise	0	-
2649	bp1	A373R1	somatic_tumour	3R	21011147	Calx	intron	X	16658279	r	exon_3	TRA	4352.9	0.16	precise	0	-
2649	bp2	A373R1	somatic_tumour	X	16658279	r	exon_3	3R	21011147	Calx	intron	TRA	4352.9	0.16	precise	0	-
2651	bp1	A373R1	somatic_tumour	3R	21111973	Rab11	intron	3R	29996361	Sas-6	exon_2	BND	8884.4	0.07	precise	0	-
2651	bp2	A373R1	somatic_tumour	3R	29996361	Sas-6	exon_2	3R	21111973	Rab11	intron	BND	8884.4	0.07	precise	0	-
2660	bp1	A373R1	somatic_tumour	3R	21522369	CG7956	intron	2R	20880549	Cib2	intron	TRA	641.8	0.14	precise	0	-
2660	bp2	A373R1	somatic_tumour	2R	20880549	Cib2	intron	3R	21522369	CG7956	intron	TRA	641.8	0.14	precise	0	-
2677	bp1	A373R1	somatic_tumour	3R	22380685	CG34149	exon	3R	23743829	Hmgcr	intron	BND	1363.1	0.1	precise	0	-
2677	bp2	A373R1	somatic_tumour	3R	23743829	Hmgcr	intron	3R	22380685	CG34149	exon	BND	1363.1	0.1	precise	0	-
2688	bp1	A373R1	somatic_tumour	3R	22729440	CG45049	exon_3	3R	31190245	mesh	intron	BND	8460.8	0.08	precise	0	-
2688	bp2	A373R1	somatic_tumour	3R	31190245	mesh	intron	3R	22729440	CG45049	exon_3	BND	8460.8	0.08	precise	0	-
2692	bp1	A373R1	somatic_tumour	3R	22858550	intergenic	intergenic	3L	19921160	Su(z)12	exon_4	TRA	2937.4	0.09	precise	0	-
2692	bp2	A373R1	somatic_tumour	3L	19921160	Su(z)12	exon_4	3R	22858550	intergenic	intergenic	TRA	2937.4	0.09	precise	0	-
2693	bp1	A373R1	somatic_tumour	3R	22880093	intergenic	intergenic	3R	31167338	stops	exon_3	BND	8287.2	0.09	precise	0	-
2693	bp2	A373R1	somatic_tumour	3R	31167338	stops	exon_3	3R	22880093	intergenic	intergenic	BND	8287.2	0.09	precise	0	-
2701	bp1	A373R1	somatic_tumour	3R	23290823	pnt	3UTR	3R	26814498	Tl	intron	BND	3523.7	0.08	precise	0	-
2701	bp2	A373R1	somatic_tumour	3R	26814498	Tl	intron	3R	23290823	pnt	3UTR	BND	3523.7	0.08	precise	0	-
2708	bp1	A373R1	somatic_tumour	2R	16573386	CG4927	exon	X	654211	Hmt4-20	intron	TRA	15919.2	0.19	precise	0	-
2708	bp2	A373R1	somatic_tumour	X	654211	Hmt4-20	intron	2R	16573386	CG4927	exon	TRA	15919.2	0.19	precise	0	-
2718	bp1	A373R1	somatic_tumour	3R	24068453	4EHP	intron	X	8554485	Nrg	3UTR	TRA	15514.0	0.13	precise	0	-
2718	bp2	A373R1	somatic_tumour	X	8554485	Nrg	3UTR	3R	24068453	4EHP	intron	TRA	15514.0	0.13	precise	0	-
2723	bp1	A373R1	somatic_tumour	3R	24424110	nAChRalpha1	intron	2R	16067336	intergenic	intergenic	TRA	8356.8	0.12	precise	0	-
2723	bp2	A373R1	somatic_tumour	2R	16067336	intergenic	intergenic	3R	24424110	nAChRalpha1	intron	TRA	8356.8	0.12	precise	0	-
2724	bp1	A373R1	somatic_tumour	3R	24464861	intergenic	intergenic	3R	29934585	eIF2B-alpha	3UTR	BND	5469.7	0.09	precise	0	-
2724	bp2	A373R1	somatic_tumour	3R	29934585	eIF2B-alpha	3UTR	3R	24464861	intergenic	intergenic	BND	5469.7	0.09	precise	0	-
2731	bp1	A373R1	somatic_tumour	3R	25178095	lobo	intron	X	9023520	CR43836	ncRNA	TRA	16154.6	0.41	precise	0	-
2731	bp2	A373R1	somatic_tumour	X	9023520	CR43836	ncRNA	3R	25178095	lobo	intron	TRA	16154.6	0.41	precise	0	-
2733	bp1	A373R1	somatic_tumour	3R	25224799	Cad96Cb	exon_5	3R	27858723	CG34353	intron	COMPLEX_BND	2633.9	0.19	precise	0	-
2733	bp2	A373R1	somatic_tumour	3R	27858723	CG34353	intron	3R	25224799	Cad96Cb	exon_5	COMPLEX_BND	2633.9	0.19	precise	0	-
2733	bp1	A373R1	somatic_tumour	3R	27858723	CG34353	intron	3R	29378659	Ptp99A	intron	COMPLEX_TANDUP	1519.9	0.27	precise	0	-
2733	bp2	A373R1	somatic_tumour	3R	29378659	Ptp99A	intron	3R	27858723	CG34353	intron	COMPLEX_TANDUP	1519.9	0.27	precise	0	-
2737	bp1	A373R1	somatic_tumour	3R	25451883	Fur1	intron	2L	3915983	fred	intron	TRA	21535.9	0.12	precise	0	-
2737	bp2	A373R1	somatic_tumour	2L	3915983	fred	intron	3R	25451883	Fur1	intron	TRA	21535.9	0.12	precise	0	-
2759	bp1	A373R1	somatic_tumour	3R	26601204	scrib	intron	3L	16506756	CG43373	intron	TRA	10094.4	0.12	precise	0	-
2759	bp2	A373R1	somatic_tumour	3L	16506756	CG43373	intron	3R	26601204	scrib	intron	TRA	10094.4	0.12	precise	0	-
2784	bp1	A373R1	somatic_tumour	3R	27886177	CG34353	intron	4	681646	CG11360	intron	TRA	27204.5	0.19	precise	0	-
2784	bp2	A373R1	somatic_tumour	4	681646	CG11360	intron	3R	27886177	CG34353	intron	TRA	27204.5	0.19	precise	0	-
2793	bp1	A373R1	somatic_tumour	3R	28505348	Dhc98D	intron	2L	19858175	sick	intron	TRA	8647.2	0.15	precise	0	-
2793	bp2	A373R1	somatic_tumour	2L	19858175	sick	intron	3R	28505348	Dhc98D	intron	TRA	8647.2	0.15	precise	0	-
2799	bp1	A373R1	somatic_tumour	3L	22345448	CR45963	ncRNA	X	1084302	CG3655	intron	TRA	21261.1	0.12	precise	0	-
2799	bp2	A373R1	somatic_tumour	X	1084302	CG3655	intron	3L	22345448	CR45963	ncRNA	TRA	21261.1	0.12	precise	0	-
2804	bp1	A373R1	somatic_tumour	3R	29093901	CG11873	intron	X	9570740	Cubn	intron	COMPLEX_TRA	19523.2	0.17	precise	0	-
2804	bp2	A373R1	somatic_tumour	X	9570740	Cubn	intron	3R	29093901	CG11873	intron	COMPLEX_TRA	19523.2	0.17	precise	0	-
2805	bp1	A373R1	somatic_tumour	3R	29124945	CG11880	intron	2L	19976776	CG43861	intron	TRA	9148.2	0.14	precise	0	-
2805	bp2	A373R1	somatic_tumour	2L	19976776	CG43861	intron	3R	29124945	CG11880	intron	TRA	9148.2	0.14	precise	0	-
2807	bp1	A373R1	somatic_tumour	3R	29167919	CG11898	exon_3	2R	15445156	CG43729	intron	TRA	13722.8	0.11	precise	0	-
2807	bp2	A373R1	somatic_tumour	2R	15445156	CG43729	intron	3R	29167919	CG11898	exon_3	TRA	13722.8	0.11	precise	0	-
2811	bp1	A373R1	somatic_tumour	3R	29356650	CR45547	exon_1	X	14475084	CG9411	exon_2	TRA	14881.6	0.14	precise	0	-
2811	bp2	A373R1	somatic_tumour	X	14475084	CG9411	exon_2	3R	29356650	CR45547	exon_1	TRA	14881.6	0.14	precise	0	-
2816	bp1	A373R1	somatic_tumour	3R	29496606	CG2010	5UTR	3L	19987997	schuy	exon	TRA	9508.6	0.18	precise	0	-
2816	bp2	A373R1	somatic_tumour	3L	19987997	schuy	exon	3R	29496606	CG2010	5UTR	TRA	9508.6	0.18	precise	0	-
2818	bp1	A373R1	somatic_tumour	X	10029282	Cht6	intron	2R	17794206	Dhit	exon_1	TRA	7764.9	0.16	precise	0	-
2818	bp2	A373R1	somatic_tumour	2R	17794206	Dhit	exon_1	X	10029282	Cht6	intron	TRA	7764.9	0.16	precise	0	-
2829	bp1	A373R1	somatic_tumour	3R	29896992	CG31038	exon_2	2L	17290172	intergenic	intergenic	TRA	12606.8	0.09	precise	0	-
2829	bp2	A373R1	somatic_tumour	2L	17290172	intergenic	intergenic	3R	29896992	CG31038	exon_2	TRA	12606.8	0.09	precise	0	-
2837	bp1	A373R1	somatic_tumour	3R	30958706	intergenic	intergenic	X	15633295	sog	exon_1	TRA	15325.4	0.13	precise	0	-
2837	bp2	A373R1	somatic_tumour	X	15633295	sog	exon_1	3R	30958706	intergenic	intergenic	TRA	15325.4	0.13	precise	0	-
2853	bp1	A373R1	somatic_tumour	2L	8796945	intergenic	intergenic	3L	8681254	intergenic	intergenic	TRA	115.7	0.12	precise	0	-
2853	bp2	A373R1	somatic_tumour	3L	8681254	intergenic	intergenic	2L	8796945	intergenic	intergenic	TRA	115.7	0.12	precise	0	-
2857	bp1	A373R1	somatic_tumour	3R	31723068	ttk	intron	2R	19386269	CG10081	exon_2	TRA	12336.8	0.12	precise	0	-
2857	bp2	A373R1	somatic_tumour	2R	19386269	CG10081	exon_2	3R	31723068	ttk	intron	TRA	12336.8	0.12	precise	0	-
2865	bp1	A373R1	somatic_tumour	4	153406	CG32006	3UTR	2R	13870504	shot	intron	TRA	13717.1	0.2	precise	0	-
2865	bp2	A373R1	somatic_tumour	2R	13870504	shot	intron	4	153406	CG32006	3UTR	TRA	13717.1	0.2	precise	0	-
2872	bp1	A373R1	somatic_tumour	4	238800	CG1674	intron	4	246760	intergenic	intergenic	DUP	8.0	0.42	imprecise	0	-
2872	bp2	A373R1	somatic_tumour	4	246760	intergenic	intergenic	4	238800	CG1674	intron	DUP	8.0	0.42	imprecise	0	-
2875	bp1	A373R1	somatic_tumour	4	361203	Hcf	intron	2R	7716386	CG1946	exon_5	TRA	7355.2	0.11	precise	0	-
2875	bp2	A373R1	somatic_tumour	2R	7716386	CG1946	exon_5	4	361203	Hcf	intron	TRA	7355.2	0.11	precise	0	-
2890	bp1	A373R1	somatic_tumour	4	767082	bt	exon_33	3R	29444279	Ptp99A	intron	TRA	28677.2	0.11	precise	0	-
2890	bp2	A373R1	somatic_tumour	3R	29444279	Ptp99A	intron	4	767082	bt	exon_33	TRA	28677.2	0.11	precise	0	-
2911	bp1	A373R1	somatic_tumour	Tomelloso	89374	intergenic	intergenic	X	5502632	CG4151	3UTR	TRA	5413.3	0.33	precise	0	-
2911	bp2	A373R1	somatic_tumour	X	5502632	CG4151	3UTR	Tomelloso	89374	intergenic	intergenic	TRA	5413.3	0.33	precise	0	-
2932	bp1	A373R1	somatic_tumour	X	1507824	inc	intron	2L	2326470	eys	intron	TRA	818.6	0.14	precise	0	-
2932	bp2	A373R1	somatic_tumour	2L	2326470	eys	intron	X	1507824	inc	intron	TRA	818.6	0.14	precise	0	-
2937	bp1	A373R1	somatic_tumour	3L	6688918	intergenic	intergenic	X	2201760	CR43637	exon_1	TRA	4487.2	0.13	precise	0	-
2937	bp2	A373R1	somatic_tumour	X	2201760	CR43637	exon_1	3L	6688918	intergenic	intergenic	TRA	4487.2	0.13	precise	0	-
2945	bp1	A373R1	somatic_tumour	X	2361568	CG2841	intron	2L	1040805	IA-2	intron	COMPLEX_TRA	1320.8	0.15	precise	0	-
2945	bp2	A373R1	somatic_tumour	2L	1040805	IA-2	intron	X	2361568	CG2841	intron	COMPLEX_TRA	1320.8	0.15	precise	0	-
2945	bp1	A373R1	somatic_tumour	X	10913342	CG43901	intron	3R	31508451	intergenic	intergenic	COMPLEX_TRA	20595.1	0.1	precise	0	-
2945	bp2	A373R1	somatic_tumour	3R	31508451	intergenic	intergenic	X	10913342	CG43901	intron	COMPLEX_TRA	20595.1	0.1	precise	0	-
2953	bp1	A373R1	somatic_tumour	X	2992960	kirre	intron	X	3136240	N	intron	DEL	143.3	0.95	imprecise	0	-
2953	bp2	A373R1	somatic_tumour	X	3136240	N	intron	X	2992960	kirre	intron	DEL	143.3	0.95	imprecise	0	-
2953	bp1	A373R1	somatic_tumour	X	2993986	kirre	intron	X	3135245	N	5UTR	DEL	141.3	1.0	precise	0	-
2953	bp2	A373R1	somatic_tumour	X	3135245	N	5UTR	X	2993986	kirre	intron	DEL	141.3	1.0	precise	0	-
2953	bp1	A373R1	somatic_tumour	X	2994440	kirre	intron	X	3135403	N	5UTR	DEL	140.0	0.96	precise	0	-
2953	bp2	A373R1	somatic_tumour	X	3135403	N	5UTR	X	2994440	kirre	intron	DEL	140.0	0.96	precise	0	-
2968	bp1	A373R1	somatic_tumour	X	4041826	intergenic	intergenic	X	6740758	intergenic	intergenic	BND	2698.9	0.15	precise	0	-
2968	bp2	A373R1	somatic_tumour	X	6740758	intergenic	intergenic	X	4041826	intergenic	intergenic	BND	2698.9	0.15	precise	0	-
2974	bp1	A373R1	somatic_tumour	X	4858505	CG42594	intron	2L	99087	Zir	exon_6	TRA	4759.4	0.13	precise	0	-
2974	bp2	A373R1	somatic_tumour	2L	99087	Zir	exon_6	X	4858505	CG42594	intron	TRA	4759.4	0.13	precise	0	-
2998	bp1	A373R1	somatic_tumour	X	6488371	CG42340	intron	X	6723574	CG3168	exon_3	BND	235.2	0.12	precise	0	-
2998	bp2	A373R1	somatic_tumour	X	6723574	CG3168	exon_3	X	6488371	CG42340	intron	BND	235.2	0.12	precise	0	-
3006	bp1	A373R1	somatic_tumour	2R	20675427	intergenic	intergenic	3R	25614365	CG5079	3UTR	TRA	4938.9	0.11	precise	0	-
3006	bp2	A373R1	somatic_tumour	3R	25614365	CG5079	3UTR	2R	20675427	intergenic	intergenic	TRA	4938.9	0.11	precise	0	-
3031	bp1	A373R1	somatic_tumour	3L	773471	intergenic	intergenic	3L	17169554	Rbp6	intron	COMPLEX_BND	16396.1	0.1	precise	0	-
3031	bp2	A373R1	somatic_tumour	3L	17169554	Rbp6	intron	3L	773471	intergenic	intergenic	COMPLEX_BND	16396.1	0.1	precise	0	-
3047	bp1	A373R1	somatic_tumour	3L	2792826	Tet	exon_6	2R	6691710	CG9422	5UTR	TRA	3898.9	0.1	precise	0	-
3047	bp2	A373R1	somatic_tumour	2R	6691710	CG9422	5UTR	3L	2792826	Tet	exon_6	TRA	3898.9	0.1	precise	0	-
3071	bp1	A373R1	somatic_tumour	X	13204168	sno	intron	3L	10945030	intergenic	intergenic	TRA	2259.1	0.11	precise	0	-
3071	bp2	A373R1	somatic_tumour	3L	10945030	intergenic	intergenic	X	13204168	sno	intron	TRA	2259.1	0.11	precise	0	-
3074	bp1	A373R1	somatic_tumour	X	13367330	Syt12	3UTR	2R	16621538	CG5065	exon_4	COMPLEX_TRA	3254.2	0.16	precise	0	-
3074	bp2	A373R1	somatic_tumour	2R	16621538	CG5065	exon_4	X	13367330	Syt12	3UTR	COMPLEX_TRA	3254.2	0.16	precise	0	-
3096	bp1	A373R1	somatic_tumour	3R	7717269	intergenic	intergenic	3L	2366535	intergenic	intergenic	TRA	5350.7	0.13	precise	0	-
3096	bp2	A373R1	somatic_tumour	3L	2366535	intergenic	intergenic	3R	7717269	intergenic	intergenic	TRA	5350.7	0.13	precise	0	-
3130	bp1	A373R1	somatic_tumour	X	18123863	intergenic	intergenic	X	18124056	intergenic	intergenic	BND	0.2	0.46	precise	0	-
3130	bp2	A373R1	somatic_tumour	X	18124056	intergenic	intergenic	X	18123863	intergenic	intergenic	BND	0.2	0.46	precise	0	-
3135	bp1	A373R1	somatic_tumour	2L	3430606	intergenic	intergenic	2R	13302064	intergenic	intergenic	TRA	9871.5	0.18	precise	0	-
3135	bp2	A373R1	somatic_tumour	2R	13302064	intergenic	intergenic	2L	3430606	intergenic	intergenic	TRA	9871.5	0.18	precise	0	-
3135	bp1	A373R1	somatic_tumour	2R	13307015	intergenic	intergenic	3L	8948818	orb2	intron	TRA	4358.2	0.13	precise	0	-
3135	bp2	A373R1	somatic_tumour	3L	8948818	orb2	intron	2R	13307015	intergenic	intergenic	TRA	4358.2	0.13	precise	0	-
3142	bp1	A373R1	somatic_tumour	3L	1240576	CG9194	exon_5	2L	16116646	intergenic	intergenic	TRA	14876.1	0.11	precise	0	-
3142	bp2	A373R1	somatic_tumour	2L	16116646	intergenic	intergenic	3L	1240576	CG9194	exon_5	TRA	14876.1	0.11	precise	0	-
3144	bp1	A373R1	somatic_tumour	X	19590257	intergenic	intergenic	3R	4898617	intergenic	intergenic	TRA	14691.6	0.16	precise	0	-
3144	bp2	A373R1	somatic_tumour	3R	4898617	intergenic	intergenic	X	19590257	intergenic	intergenic	TRA	14691.6	0.16	precise	0	-
3150	bp1	A373R1	somatic_tumour	X	20285348	intergenic	intergenic	2L	6186256	CG34380	intron	TRA	14099.1	0.14	precise	0	-
3150	bp2	A373R1	somatic_tumour	2L	6186256	CG34380	intron	X	20285348	intergenic	intergenic	TRA	14099.1	0.14	precise	0	-
3157	bp1	A373R1	somatic_tumour	X	21233073	CG32521	intron	2R	3184553	dpr21	intron	TRA	18048.5	0.14	precise	0	-
3157	bp2	A373R1	somatic_tumour	2R	3184553	dpr21	intron	X	21233073	CG32521	intron	TRA	18048.5	0.14	precise	0	-
3166	bp1	A373R1	somatic_tumour	Y	472705	kl-3	intron	3L	17470613	CG7589	5UTR	TRA	16997.9	0.13	precise	0	-
3166	bp2	A373R1	somatic_tumour	3L	17470613	CG7589	5UTR	Y	472705	kl-3	intron	TRA	16997.9	0.13	precise	0	-
3	bp1	A373R3	somatic_tumour	2L	647432	ds	intron	X	6244020	Rbcn-3A	exon_5	TRA	5596.6	0.07	precise	0	NHEJ
3	bp2	A373R3	somatic_tumour	X	6244020	Rbcn-3A	exon_5	2L	647432	ds	intron	TRA	5596.6	0.07	precise	0	NHEJ
9	bp1	A373R3	somatic_tumour	2L	2380873	intergenic	intergenic	2L	12288901	bru1	intron	BND	9908.0	0.06	precise	TTTACGAA	Alt-EJ
9	bp2	A373R3	somatic_tumour	2L	12288901	bru1	intron	2L	2380873	intergenic	intergenic	BND	9908.0	0.06	precise	TTTACGAA	Alt-EJ
12	bp1	A373R3	somatic_tumour	2L	2565270	Cyp309a2	intron	2R	13513152	Vmat	3UTR	TRA	10947.9	0.06	precise	T	Alt-EJ
12	bp2	A373R3	somatic_tumour	2R	13513152	Vmat	3UTR	2L	2565270	Cyp309a2	intron	TRA	10947.9	0.06	precise	T	Alt-EJ
13	bp1	A373R3	somatic_tumour	2L	2615845	intergenic	intergenic	2L	6605512	intergenic	intergenic	BND	3989.7	0.04	precise	GCC	Alt-EJ
13	bp2	A373R3	somatic_tumour	2L	6605512	intergenic	intergenic	2L	2615845	intergenic	intergenic	BND	3989.7	0.04	precise	GCC	Alt-EJ
15	bp1	A373R3	somatic_tumour	2L	3829232	intergenic	intergenic	X	18495746	GalNAc-T2	3UTR	TRA	14666.5	0.08	precise	GGGATTTC	Alt-EJ
15	bp2	A373R3	somatic_tumour	X	18495746	GalNAc-T2	3UTR	2L	3829232	intergenic	intergenic	TRA	14666.5	0.08	precise	GGGATTTC	Alt-EJ
22	bp1	A373R3	somatic_tumour	2L	5445521	intergenic	intergenic	3R	12213592	intergenic	intergenic	TRA	6768.1	0.06	precise	CAAATTA	Alt-EJ
22	bp2	A373R3	somatic_tumour	3R	12213592	intergenic	intergenic	2L	5445521	intergenic	intergenic	TRA	6768.1	0.06	precise	CAAATTA	Alt-EJ
24	bp1	A373R3	somatic_tumour	2L	6096637	intergenic	intergenic	2R	19944064	intergenic	intergenic	TRA	13847.4	0.05	precise	C	Alt-EJ
24	bp2	A373R3	somatic_tumour	2R	19944064	intergenic	intergenic	2L	6096637	intergenic	intergenic	TRA	13847.4	0.05	precise	C	Alt-EJ
33	bp1	A373R3	somatic_tumour	2L	8797450	intergenic	intergenic	2R	11568588	intergenic	intergenic	TRA	2771.1	0.05	precise	0	NHEJ
33	bp2	A373R3	somatic_tumour	2R	11568588	intergenic	intergenic	2L	8797450	intergenic	intergenic	TRA	2771.1	0.05	precise	0	NHEJ
39	bp1	A373R3	somatic_tumour	2L	9843172	nAChRalpha6	intron	2R	8311676	CR44450	exon_1	TRA	1531.5	0.05	precise	0	NHEJ
39	bp2	A373R3	somatic_tumour	2R	8311676	CR44450	exon_1	2L	9843172	nAChRalpha6	intron	TRA	1531.5	0.05	precise	0	NHEJ
60	bp1	A373R3	somatic_tumour	2L	16418430	CG5888	intron	2R	13530335	Vmat	intron	TRA	2888.1	0.08	precise	0	NHEJ
60	bp2	A373R3	somatic_tumour	2R	13530335	Vmat	intron	2L	16418430	CG5888	intron	TRA	2888.1	0.08	precise	0	NHEJ
80	bp1	A373R3	somatic_tumour	2R	5850303	dpr12	intron	3R	5246121	CG12163	intron	TRA	604.2	0.04	precise	0	NHEJ
80	bp2	A373R3	somatic_tumour	3R	5246121	CG12163	intron	2R	5850303	dpr12	intron	TRA	604.2	0.04	precise	0	NHEJ
81	bp1	A373R3	somatic_tumour	2R	6532200	jing	intron	2L	21283344	Cyp6t2Psi	exon_1	TRA	14751.1	0.04	precise	T	Alt-EJ
81	bp2	A373R3	somatic_tumour	2L	21283344	Cyp6t2Psi	exon_1	2R	6532200	jing	intron	TRA	14751.1	0.04	precise	T	Alt-EJ
91	bp1	A373R3	somatic_tumour	2R	9334321	CG13954	intron	3L	12325601	intergenic	intergenic	TRA	2991.3	0.07	precise	CCAAAAC	Alt-EJ
91	bp2	A373R3	somatic_tumour	3L	12325601	intergenic	intergenic	2R	9334321	CG13954	intron	TRA	2991.3	0.07	precise	CCAAAAC	Alt-EJ
92	bp1	A373R3	somatic_tumour	2R	9418566	intergenic	intergenic	2R	10140104	Or46a	exon_1	BND	721.5	0.03	precise	GCACT	Alt-EJ
92	bp2	A373R3	somatic_tumour	2R	10140104	Or46a	exon_1	2R	9418566	intergenic	intergenic	BND	721.5	0.03	precise	GCACT	Alt-EJ
95	bp1	A373R3	somatic_tumour	2R	10667716	intergenic	intergenic	3L	9876984	intergenic	intergenic	TRA	790.7	0.21	precise	CAA	Alt-EJ
95	bp2	A373R3	somatic_tumour	3L	9876984	intergenic	intergenic	2R	10667716	intergenic	intergenic	TRA	790.7	0.21	precise	CAA	Alt-EJ
100	bp1	A373R3	somatic_tumour	2R	12455384	Lac	intron	3L	8284008	cert	intron	TRA	4171.4	0.05	precise	G	Alt-EJ
100	bp2	A373R3	somatic_tumour	3L	8284008	cert	intron	2R	12455384	Lac	intron	TRA	4171.4	0.05	precise	G	Alt-EJ
101	bp1	A373R3	somatic_tumour	2R	12682096	CG8771	exon_6	3R	14789306	jvl	exon_4	TRA	2107.2	0.04	precise	0	NHEJ
101	bp2	A373R3	somatic_tumour	3R	14789306	jvl	exon_4	2R	12682096	CG8771	exon_6	TRA	2107.2	0.04	precise	0	NHEJ
113	bp1	A373R3	somatic_tumour	2R	17263776	mbl	intron	2R	17279648	mbl	intron	DUP	15.9	0.34	imprecise	0	-
113	bp2	A373R3	somatic_tumour	2R	17279648	mbl	intron	2R	17263776	mbl	intron	DUP	15.9	0.34	imprecise	0	-
121	bp1	A373R3	somatic_tumour	2R	21549103	Egfr	intron	3R	13697225	f-cup	exon_8	TRA	7851.9	0.05	precise	G	Alt-EJ
121	bp2	A373R3	somatic_tumour	3R	13697225	f-cup	exon_8	2R	21549103	Egfr	intron	TRA	7851.9	0.05	precise	G	Alt-EJ
128	bp1	A373R3	somatic_tumour	2R	23141212	intergenic	intergenic	3R	21364381	pre-mod(mdg4)-AB	5UTR	TRA	1776.8	0.04	precise	CCCTT	Alt-EJ
128	bp2	A373R3	somatic_tumour	3R	21364381	pre-mod(mdg4)-AB	5UTR	2R	23141212	intergenic	intergenic	TRA	1776.8	0.04	precise	CCCTT	Alt-EJ
130	bp1	A373R3	somatic_tumour	2R	23480790	CG43795	intron	3R	6773848	CR42721	ncRNA	TRA	16706.9	0.05	precise	GTAG	Alt-EJ
130	bp2	A373R3	somatic_tumour	3R	6773848	CR42721	ncRNA	2R	23480790	CG43795	intron	TRA	16706.9	0.05	precise	GTAG	Alt-EJ
139	bp1	A373R3	somatic_tumour	3L	1355758	Ptp61F	intron	3L	17182517	Rbp6	intron	BND	15826.8	0.03	precise	0	NHEJ
139	bp2	A373R3	somatic_tumour	3L	17182517	Rbp6	intron	3L	1355758	Ptp61F	intron	BND	15826.8	0.03	precise	0	NHEJ
143	bp1	A373R3	somatic_tumour	3L	3277631	intergenic	intergenic	3R	18109064	tRNA:Gly-TCC-1-4	tRNA	TRA	14831.4	0.07	precise	0	NHEJ
143	bp2	A373R3	somatic_tumour	3R	18109064	tRNA:Gly-TCC-1-4	tRNA	3L	3277631	intergenic	intergenic	TRA	14831.4	0.07	precise	0	NHEJ
145	bp1	A373R3	somatic_tumour	3L	3943272	CG14982	exon_1	3L	8345790	CG7182	exon	BND	4402.5	0.03	precise	TGCG	Alt-EJ
145	bp2	A373R3	somatic_tumour	3L	8345790	CG7182	exon	3L	3943272	CG14982	exon_1	BND	4402.5	0.03	precise	TGCG	Alt-EJ
147	bp1	A373R3	somatic_tumour	3L	4542472	CG11357	exon_1	3L	6515347	sfl	intron	BND	1972.9	0.04	precise	0	-
147	bp2	A373R3	somatic_tumour	3L	6515347	sfl	intron	3L	4542472	CG11357	exon_1	BND	1972.9	0.04	precise	0	-
148	bp1	A373R3	somatic_tumour	3L	4762617	RhoGEF64C	intron	2L	13601230	kuz	intron	TRA	8838.6	0.06	precise	C	Alt-EJ
148	bp2	A373R3	somatic_tumour	2L	13601230	kuz	intron	3L	4762617	RhoGEF64C	intron	TRA	8838.6	0.06	precise	C	Alt-EJ
152	bp1	A373R3	somatic_tumour	3L	7116471	form3	intron	2R	4966685	Ir41a	intron	TRA	2149.8	0.27	precise	A	Alt-EJ
152	bp2	A373R3	somatic_tumour	2R	4966685	Ir41a	intron	3L	7116471	form3	intron	TRA	2149.8	0.27	precise	A	Alt-EJ
158	bp1	A373R3	somatic_tumour	3L	9039625	intergenic	intergenic	3L	12080473	Sema-5c	intron	BND	3040.8	0.03	precise	CTGCTGC	Alt-EJ
158	bp2	A373R3	somatic_tumour	3L	12080473	Sema-5c	intron	3L	9039625	intergenic	intergenic	BND	3040.8	0.03	precise	CTGCTGC	Alt-EJ
163	bp1	A373R3	somatic_tumour	3L	12130274	Lsp2	exon	3R	10211411	Timp	intron	TRA	1918.9	0.06	precise	GTGCCA	Alt-EJ
163	bp2	A373R3	somatic_tumour	3R	10211411	Timp	intron	3L	12130274	Lsp2	exon	TRA	1918.9	0.06	precise	GTGCCA	Alt-EJ
168	bp1	A373R3	somatic_tumour	3L	16590696	tra	exon_2	3R	31425288	Gprk2	intron	TRA	14834.6	0.05	precise	C	Alt-EJ
168	bp2	A373R3	somatic_tumour	3R	31425288	Gprk2	intron	3L	16590696	tra	exon_2	TRA	14834.6	0.05	precise	C	Alt-EJ
170	bp1	A373R3	somatic_tumour	3L	16701356	CR45897	ncRNA	3L	21227591	Eip78C	exon_2	BND	4526.2	0.08	precise	0	-
170	bp2	A373R3	somatic_tumour	3L	21227591	Eip78C	exon_2	3L	16701356	CR45897	ncRNA	BND	4526.2	0.08	precise	0	-
178	bp1	A373R3	somatic_tumour	3L	22127698	intergenic	intergenic	X	3678445	Mnt	intron	TRA	18449.3	0.06	precise	TTACCCC	Alt-EJ
178	bp2	A373R3	somatic_tumour	X	3678445	Mnt	intron	3L	22127698	intergenic	intergenic	TRA	18449.3	0.06	precise	TTACCCC	Alt-EJ
196	bp1	A373R3	somatic_tumour	3R	9861512	Teh1	intron	3R	30513691	CG31524	exon_4	BND	20652.2	0.03	precise	T	Alt-EJ
196	bp2	A373R3	somatic_tumour	3R	30513691	CG31524	exon_4	3R	9861512	Teh1	intron	BND	20652.2	0.03	precise	T	Alt-EJ
198	bp1	A373R3	somatic_tumour	3R	11181613	intergenic	intergenic	2R	24432165	Pgam5-2	exon	TRA	13250.6	0.05	precise	AG	Alt-EJ
198	bp2	A373R3	somatic_tumour	2R	24432165	Pgam5-2	exon	3R	11181613	intergenic	intergenic	TRA	13250.6	0.05	precise	AG	Alt-EJ
200	bp1	A373R3	somatic_tumour	3R	11562988	sea	intron	3R	11563037	sea	intron	DEL	0.1	0.35	precise	A	Alt-EJ
200	bp2	A373R3	somatic_tumour	3R	11563037	sea	intron	3R	11562988	sea	intron	DEL	0.1	0.35	precise	A	Alt-EJ
209	bp1	A373R3	somatic_tumour	3R	16378760	ss	intron	3R	20573305	intergenic	intergenic	BND	4194.5	0.03	precise	TTGGC	Alt-EJ
209	bp2	A373R3	somatic_tumour	3R	20573305	intergenic	intergenic	3R	16378760	ss	intron	BND	4194.5	0.03	precise	TTGGC	Alt-EJ
225	bp1	A373R3	somatic_tumour	3R	24200976	twin	exon_1	3R	26609536	intergenic	intergenic	BND	2408.6	0.03	precise	0	NHEJ
225	bp2	A373R3	somatic_tumour	3R	26609536	intergenic	intergenic	3R	24200976	twin	exon_1	BND	2408.6	0.03	precise	0	NHEJ
229	bp1	A373R3	somatic_tumour	3R	25330986	CHKov2	exon_1	X	12452678	Pkcdelta	exon_14	TRA	12878.3	0.05	precise	TCAATTTGTAGG	Alt-EJ
229	bp2	A373R3	somatic_tumour	X	12452678	Pkcdelta	exon_14	3R	25330986	CHKov2	exon_1	TRA	12878.3	0.05	precise	TCAATTTGTAGG	Alt-EJ
238	bp1	A373R3	somatic_tumour	4	418098	intergenic	intergenic	2L	13037524	CG9932	intron	TRA	12619.4	0.04	precise	AGACA	Alt-EJ
238	bp2	A373R3	somatic_tumour	2L	13037524	CG9932	intron	4	418098	intergenic	intergenic	TRA	12619.4	0.04	precise	AGACA	Alt-EJ
244	bp1	A373R3	somatic_tumour	X	3135326	N	5UTR	X	3139096	N	intron	DEL	3.8	0.74	precise	A	Alt-EJ
244	bp2	A373R3	somatic_tumour	X	3139096	N	intron	X	3135326	N	5UTR	DEL	3.8	0.74	precise	A	Alt-EJ
246	bp1	A373R3	somatic_tumour	X	4697763	ctp	intron	X	5073382	CG32767	3UTR	BND	375.6	0.09	precise	GATGGAAA	Alt-EJ
246	bp2	A373R3	somatic_tumour	X	5073382	CG32767	3UTR	X	4697763	ctp	intron	BND	375.6	0.09	precise	GATGGAAA	Alt-EJ
259	bp1	A373R3	somatic_tumour	2R	23186121	CG34371	intron	3L	14239313	CR45399	exon_1	TRA	8946.8	0.04	precise	CTTGGCCAT	Alt-EJ
259	bp2	A373R3	somatic_tumour	3L	14239313	CR45399	exon_1	2R	23186121	CG34371	intron	TRA	8946.8	0.04	precise	CTTGGCCAT	Alt-EJ
4	bp1	A373R5	somatic_tumour	2L	5103277	Msp300	exon_2	2L	16264626	crp	3UTR	BND	11161.3	0.03	precise	C	Alt-EJ
4	bp2	A373R5	somatic_tumour	2L	16264626	crp	3UTR	2L	5103277	Msp300	exon_2	BND	11161.3	0.03	precise	C	Alt-EJ
16	bp1	A373R5	somatic_tumour	3L	2558343	msn	exon_13	Tomelloso	81606	intergenic	intergenic	TRA	2476.7	0.07	precise	0	NHEJ
16	bp2	A373R5	somatic_tumour	Tomelloso	81606	intergenic	intergenic	3L	2558343	msn	exon_13	TRA	2476.7	0.07	precise	0	NHEJ
17	bp1	A373R5	somatic_tumour	3L	3312018	ZnT63C	exon_5	Tomelloso	102060	intergenic	intergenic	TRA	3210.0	0.13	precise	0	NHEJ
17	bp2	A373R5	somatic_tumour	Tomelloso	102060	intergenic	intergenic	3L	3312018	ZnT63C	exon_5	TRA	3210.0	0.13	precise	0	NHEJ
24	bp1	A373R5	somatic_tumour	3R	11288316	CR31386	ncRNA	3R	21490211	intergenic	intergenic	BND	10201.9	0.03	precise	ATAGA	Alt-EJ
24	bp2	A373R5	somatic_tumour	3R	21490211	intergenic	intergenic	3R	11288316	CR31386	ncRNA	BND	10201.9	0.03	precise	ATAGA	Alt-EJ
25	bp1	A373R5	somatic_tumour	3R	14990196	intergenic	intergenic	2R	18680738	CG44435	exon_1	TRA	3690.5	0.04	precise	AAGGACATTGA	Alt-EJ
25	bp2	A373R5	somatic_tumour	2R	18680738	CG44435	exon_1	3R	14990196	intergenic	intergenic	TRA	3690.5	0.04	precise	AAGGACATTGA	Alt-EJ
28	bp1	A373R5	somatic_tumour	3R	21395894	intergenic	intergenic	2L	15133724	intergenic	intergenic	TRA	6262.2	0.04	precise	0	NHEJ
28	bp2	A373R5	somatic_tumour	2L	15133724	intergenic	intergenic	3R	21395894	intergenic	intergenic	TRA	6262.2	0.04	precise	0	NHEJ
41	bp1	A373R5	somatic_tumour	X	3117762	kirre	intron	X	3177111	dnc	intron	DEL	59.3	0.26	precise	0	-
41	bp2	A373R5	somatic_tumour	X	3177111	dnc	intron	X	3117762	kirre	intron	DEL	59.3	0.26	precise	0	-
41	bp1	A373R5	somatic_tumour	X	3117915	kirre	intron	X	3274245	dnc	intron	DEL	156.3	0.63	imprecise	0	-
41	bp2	A373R5	somatic_tumour	X	3274245	dnc	intron	X	3117915	kirre	intron	DEL	156.3	0.63	imprecise	0	-
41	bp1	A373R5	somatic_tumour	X	3189060	dnc	intron	X	3273846	dnc	intron	DEL	84.8	0.63	precise	0	-
41	bp2	A373R5	somatic_tumour	X	3273846	dnc	intron	X	3189060	dnc	intron	DEL	84.8	0.63	precise	0	-
4	bp1	A373R7	somatic_tumour	2L	205135	CG11617	exon	2L	205916	CG11617	exon_3	BND	0.8	0.22	precise	GCATCCAGC	Alt-EJ
4	bp2	A373R7	somatic_tumour	2L	205916	CG11617	exon_3	2L	205135	CG11617	exon	BND	0.8	0.22	precise	GCATCCAGC	Alt-EJ
5	bp1	A373R7	somatic_tumour	2L	520438	ush	intron	2L	1504681	intergenic	intergenic	BND	984.2	0.16	precise	0	NHEJ
5	bp2	A373R7	somatic_tumour	2L	1504681	intergenic	intergenic	2L	520438	ush	intron	BND	984.2	0.16	precise	0	NHEJ
24	bp1	A373R7	somatic_tumour	2L	3093585	toc	intron	3L	11664665	CG32085	intron	TRA	8571.1	0.29	precise	ACCAAAT	Alt-EJ
24	bp2	A373R7	somatic_tumour	3L	11664665	CG32085	intron	2L	3093585	toc	intron	TRA	8571.1	0.29	precise	ACCAAAT	Alt-EJ
27	bp1	A373R7	somatic_tumour	2L	4138262	intergenic	intergenic	3L	7069104	CG32391	exon_1	TRA	2930.8	0.29	precise	GCA	Alt-EJ
27	bp2	A373R7	somatic_tumour	3L	7069104	CG32391	exon_1	2L	4138262	intergenic	intergenic	TRA	2930.8	0.29	precise	GCA	Alt-EJ
33	bp1	A373R7	somatic_tumour	2L	4855422	smog	intron	Tomelloso	46531	intergenic	intergenic	TRA	4808.9	0.34	precise	0	-
33	bp2	A373R7	somatic_tumour	Tomelloso	46531	intergenic	intergenic	2L	4855422	smog	intron	TRA	4808.9	0.34	precise	0	-
40	bp1	A373R7	somatic_tumour	2L	6084142	Kr-h1	intron	2R	14186700	CG30069	exon_1	TRA	8102.6	0.19	precise	CG	Alt-EJ
40	bp2	A373R7	somatic_tumour	2R	14186700	CG30069	exon_1	2L	6084142	Kr-h1	intron	TRA	8102.6	0.19	precise	CG	Alt-EJ
44	bp1	A373R7	somatic_tumour	2L	7188642	CG4496	intron	2L	7233813	Ndae1	intron	COMPLEX_DUP	45.2	0.34	imprecise	0	-
44	bp2	A373R7	somatic_tumour	2L	7233813	Ndae1	intron	2L	7188642	CG4496	intron	COMPLEX_DUP	45.2	0.34	imprecise	0	-
44	bp1	A373R7	somatic_tumour	2L	7193295	CG4497	exon_2	3R	16377837	ss	exon_7	COMPLEX_TRA	9184.5	0.27	precise	GTCCATGG	Alt-EJ
44	bp2	A373R7	somatic_tumour	3R	16377837	ss	exon_7	2L	7193295	CG4497	exon_2	COMPLEX_TRA	9184.5	0.27	precise	GTCCATGG	Alt-EJ
46	bp1	A373R7	somatic_tumour	2L	7244006	Ndae1	intron	2L	7244123	Ndae1	intron	BND	0.1	0.38	precise	0	-
46	bp2	A373R7	somatic_tumour	2L	7244123	Ndae1	intron	2L	7244006	Ndae1	intron	BND	0.1	0.38	precise	0	-
47	bp1	A373R7	somatic_tumour	2L	7327272	intergenic	intergenic	3L	6323990	intergenic	intergenic	TRA	1003.3	0.44	precise	0	-
47	bp2	A373R7	somatic_tumour	3L	6323990	intergenic	intergenic	2L	7327272	intergenic	intergenic	TRA	1003.3	0.44	precise	0	-
61	bp1	A373R7	somatic_tumour	2L	10079586	CG44153	intron	2L	10111851	CG34109	intron	COMPLEX_DEL	32.3	0.31	imprecise	0	-
61	bp2	A373R7	somatic_tumour	2L	10111851	CG34109	intron	2L	10079586	CG44153	intron	COMPLEX_DEL	32.3	0.31	imprecise	0	-
61	bp1	A373R7	somatic_tumour	2L	10081313	CG44153	exon_10	X	2078459	CG16903	3UTR	COMPLEX_TRA	8002.9	0.36	precise	0	-
61	bp2	A373R7	somatic_tumour	X	2078459	CG16903	3UTR	2L	10081313	CG44153	exon_10	COMPLEX_TRA	8002.9	0.36	precise	0	-
67	bp1	A373R7	somatic_tumour	3R	25853350	CG5886	exon	2L	11197465	Ca-beta	intron	TRA	14655.9	0.34	precise	0	-
67	bp2	A373R7	somatic_tumour	2L	11197465	Ca-beta	intron	3R	25853350	CG5886	exon	TRA	14655.9	0.34	precise	0	-
79	bp1	A373R7	somatic_tumour	2L	14068330	nAChRalpha5	intron	3L	21540255	VhaM9.7-b	intron	TRA	7471.9	0.21	precise	0	FoSTeS
79	bp2	A373R7	somatic_tumour	3L	21540255	VhaM9.7-b	intron	2L	14068330	nAChRalpha5	intron	TRA	7471.9	0.21	precise	0	FoSTeS
80	bp1	A373R7	somatic_tumour	2L	14395906	elB	intron	3L	10969893	intergenic	intergenic	TRA	3426.0	0.22	precise	TTAGA	Alt-EJ
80	bp2	A373R7	somatic_tumour	3L	10969893	intergenic	intergenic	2L	14395906	elB	intron	TRA	3426.0	0.22	precise	TTAGA	Alt-EJ
83	bp1	A373R7	somatic_tumour	2L	15398132	intergenic	intergenic	3L	10605554	intergenic	intergenic	COMPLEX_TRA	4792.6	0.4	precise	0	-
83	bp2	A373R7	somatic_tumour	3L	10605554	intergenic	intergenic	2L	15398132	intergenic	intergenic	COMPLEX_TRA	4792.6	0.4	precise	0	-
83	bp1	A373R7	somatic_tumour	3L	1955201	mv	exon_10	3L	10605713	intergenic	intergenic	COMPLEX_BND	8650.5	0.38	precise	0	-
83	bp2	A373R7	somatic_tumour	3L	10605713	intergenic	intergenic	3L	1955201	mv	exon_10	COMPLEX_BND	8650.5	0.38	precise	0	-
87	bp1	A373R7	somatic_tumour	2L	16914967	tweek	exon_20	X	8404036	CG10555	3UTR	TRA	8510.9	0.36	precise	0	-
87	bp2	A373R7	somatic_tumour	X	8404036	CG10555	3UTR	2L	16914967	tweek	exon_20	TRA	8510.9	0.36	precise	0	-
99	bp1	A373R7	somatic_tumour	2L	20533446	intergenic	intergenic	2L	20591523	CR44909	ncRNA	DUP	58.1	0.27	imprecise	0	-
99	bp2	A373R7	somatic_tumour	2L	20591523	CR44909	ncRNA	2L	20533446	intergenic	intergenic	DUP	58.1	0.27	imprecise	0	-
109	bp1	A373R7	somatic_tumour	2R	1603549	intergenic	intergenic	3L	1432885	Ptp61F	intron	TRA	170.7	0.48	precise	0	-
109	bp2	A373R7	somatic_tumour	3L	1432885	Ptp61F	intron	2R	1603549	intergenic	intergenic	TRA	170.7	0.48	precise	0	-
117	bp1	A373R7	somatic_tumour	2R	5880389	CG44438	exon_1	2R	23467229	CG43795	exon_3	BND	17586.8	0.14	precise	0	-
117	bp2	A373R7	somatic_tumour	2R	23467229	CG43795	exon_3	2R	5880389	CG44438	exon_1	BND	17586.8	0.14	precise	0	-
118	bp1	A373R7	somatic_tumour	2R	5914303	CG43366	intron	2L	16449217	Idgf2	5UTR	TRA	10534.9	0.21	precise	0	-
118	bp2	A373R7	somatic_tumour	2L	16449217	Idgf2	5UTR	2R	5914303	CG43366	intron	TRA	10534.9	0.21	precise	0	-
124	bp1	A373R7	somatic_tumour	2R	6845242	intergenic	intergenic	3L	628140	intergenic	intergenic	TRA	6217.1	0.31	precise	0	-
124	bp2	A373R7	somatic_tumour	3L	628140	intergenic	intergenic	2R	6845242	intergenic	intergenic	TRA	6217.1	0.31	precise	0	-
141	bp1	A373R7	somatic_tumour	2R	11000740	luna	intron	3L	11885435	CG44837	intron	TRA	884.7	0.44	precise	0	-
141	bp2	A373R7	somatic_tumour	3L	11885435	CG44837	intron	2R	11000740	luna	intron	TRA	884.7	0.44	precise	0	-
146	bp1	A373R7	somatic_tumour	2R	12338136	Den1	intron	2R	12402666	Cpr49Ae	intron	DUP	64.5	0.24	imprecise	0	-
146	bp2	A373R7	somatic_tumour	2R	12402666	Cpr49Ae	intron	2R	12338136	Den1	intron	DUP	64.5	0.24	imprecise	0	-
148	bp1	A373R7	somatic_tumour	2R	12543310	fra	intron	3L	8329993	CG34462	exon	TRA	4213.3	0.29	precise	0	-
148	bp2	A373R7	somatic_tumour	3L	8329993	CG34462	exon	2R	12543310	fra	intron	TRA	4213.3	0.29	precise	0	-
149	bp1	A373R7	somatic_tumour	2R	13165174	GLaz	intron	2L	8745467	intergenic	intergenic	TRA	4419.7	0.4	precise	0	-
149	bp2	A373R7	somatic_tumour	2L	8745467	intergenic	intergenic	2R	13165174	GLaz	intron	TRA	4419.7	0.4	precise	0	-
163	bp1	A373R7	somatic_tumour	2R	15439905	CG43729	intron	2R	21349225	CG17974	exon	BND	5909.3	0.17	precise	0	-
163	bp2	A373R7	somatic_tumour	2R	21349225	CG17974	exon	2R	15439905	CG43729	intron	BND	5909.3	0.17	precise	0	-
165	bp1	A373R7	somatic_tumour	2R	15995449	ATPCL	exon_7	4	1227056	Dyrk3	exon_5	TRA	14768.4	0.36	precise	0	-
165	bp2	A373R7	somatic_tumour	4	1227056	Dyrk3	exon_5	2R	15995449	ATPCL	exon_7	TRA	14768.4	0.36	precise	0	-
172	bp1	A373R7	somatic_tumour	2R	17048826	intergenic	intergenic	2R	17068185	CG30460	exon_6	COMPLEX_DUP	19.4	0.4	imprecise	0	-
172	bp2	A373R7	somatic_tumour	2R	17068185	CG30460	exon_6	2R	17048826	intergenic	intergenic	COMPLEX_DUP	19.4	0.4	imprecise	0	-
174	bp1	A373R7	somatic_tumour	2R	17084978	CG30460	intron	3L	95682	intergenic	intergenic	TRA	16989.3	0.34	precise	0	-
174	bp2	A373R7	somatic_tumour	3L	95682	intergenic	intergenic	2R	17084978	CG30460	intron	TRA	16989.3	0.34	precise	0	-
178	bp1	A373R7	somatic_tumour	2R	18939555	sano	intron	2R	18971820	CG15107	intron	DUP	32.3	0.36	imprecise	0	-
178	bp2	A373R7	somatic_tumour	2R	18971820	CG15107	intron	2R	18939555	sano	intron	DUP	32.3	0.36	imprecise	0	-
182	bp1	A373R7	somatic_tumour	2R	19811510	intergenic	intergenic	Tomelloso	58598	intergenic	intergenic	TRA	19752.9	0.87	precise	0	-
182	bp2	A373R7	somatic_tumour	Tomelloso	58598	intergenic	intergenic	2R	19811510	intergenic	intergenic	TRA	19752.9	0.87	precise	0	-
185	bp1	A373R7	somatic_tumour	2R	20309206	CG13868	3UTR	2R	20309560	CG13868	3UTR	BND	0.4	0.44	precise	0	-
185	bp2	A373R7	somatic_tumour	2R	20309560	CG13868	3UTR	2R	20309206	CG13868	3UTR	BND	0.4	0.44	precise	0	-
192	bp1	A373R7	somatic_tumour	2R	21382619	intergenic	intergenic	2R	21384283	CG10795	5UTR	DEL	1.7	0.28	precise	ACTGCAAT	Alt-EJ
192	bp2	A373R7	somatic_tumour	2R	21384283	CG10795	5UTR	2R	21382619	intergenic	intergenic	DEL	1.7	0.28	precise	ACTGCAAT	Alt-EJ
193	bp1	A373R7	somatic_tumour	2R	21578832	intergenic	intergenic	2R	21604644	CR45150	ncRNA	DUP	25.8	0.37	imprecise	0	-
193	bp2	A373R7	somatic_tumour	2R	21604644	CR45150	ncRNA	2R	21578832	intergenic	intergenic	DUP	25.8	0.37	imprecise	0	-
203	bp1	A373R7	somatic_tumour	2R	24741903	intergenic	intergenic	3R	26935443	sda	intron	TRA	2193.5	0.17	precise	0	-
203	bp2	A373R7	somatic_tumour	3R	26935443	sda	intron	2R	24741903	intergenic	intergenic	TRA	2193.5	0.17	precise	0	-
208	bp1	A373R7	somatic_tumour	3L	703559	intergenic	intergenic	2R	19372878	CG9416	intron	TRA	18669.3	0.16	precise	0	-
208	bp2	A373R7	somatic_tumour	2R	19372878	CG9416	intron	3L	703559	intergenic	intergenic	TRA	18669.3	0.16	precise	0	-
211	bp1	A373R7	somatic_tumour	3L	1097010	bab1	intron	3L	1187352	intergenic	intergenic	DUP	90.3	0.3	imprecise	0	-
211	bp2	A373R7	somatic_tumour	3L	1187352	intergenic	intergenic	3L	1097010	bab1	intron	DUP	90.3	0.3	imprecise	0	-
216	bp1	A373R7	somatic_tumour	3L	2160153	CG15822	exon_5	3R	9595325	CG8312	intron	TRA	7435.2	0.36	precise	0	-
216	bp2	A373R7	somatic_tumour	3R	9595325	CG8312	intron	3L	2160153	CG15822	exon_5	TRA	7435.2	0.36	precise	0	-
224	bp1	A373R7	somatic_tumour	3L	5908521	CG13288	intron	3L	6517403	sfl	intron	BND	608.9	0.29	precise	0	-
224	bp2	A373R7	somatic_tumour	3L	6517403	sfl	intron	3L	5908521	CG13288	intron	BND	608.9	0.29	precise	0	-
226	bp1	A373R7	somatic_tumour	3L	5956119	intergenic	intergenic	3L	6040008	Jon65Aiv	exon	DEL	83.9	0.29	imprecise	0	-
226	bp2	A373R7	somatic_tumour	3L	6040008	Jon65Aiv	exon	3L	5956119	intergenic	intergenic	DEL	83.9	0.29	imprecise	0	-
233	bp1	A373R7	somatic_tumour	3L	8214669	intergenic	intergenic	3L	8266293	Dscam4	intron	DUP	51.6	0.31	imprecise	0	-
233	bp2	A373R7	somatic_tumour	3L	8266293	Dscam4	intron	3L	8214669	intergenic	intergenic	DUP	51.6	0.31	imprecise	0	-
234	bp1	A373R7	somatic_tumour	3L	8618621	S-Lap1	exon_2	2L	20649480	CG18810	exon	TRA	12030.9	0.26	precise	0	-
234	bp2	A373R7	somatic_tumour	2L	20649480	CG18810	exon	3L	8618621	S-Lap1	exon_2	TRA	12030.9	0.26	precise	0	-
243	bp1	A373R7	somatic_tumour	3L	12634974	CR32111	ncRNA	3L	12718863	intergenic	intergenic	COMPLEX_DUP	83.9	0.23	imprecise	0	-
243	bp2	A373R7	somatic_tumour	3L	12718863	intergenic	intergenic	3L	12634974	CR32111	ncRNA	COMPLEX_DUP	83.9	0.23	imprecise	0	-
251	bp1	A373R7	somatic_tumour	3L	14293395	fz	intron	3L	14338566	fz	intron	DUP	45.2	0.37	imprecise	0	-
251	bp2	A373R7	somatic_tumour	3L	14338566	fz	intron	3L	14293395	fz	intron	DUP	45.2	0.37	imprecise	0	-
255	bp1	A373R7	somatic_tumour	3L	15282449	intergenic	intergenic	X	1902350	CG32801	exon	TRA	13380.1	0.24	precise	0	-
255	bp2	A373R7	somatic_tumour	X	1902350	CG32801	exon	3L	15282449	intergenic	intergenic	TRA	13380.1	0.24	precise	0	-
258	bp1	A373R7	somatic_tumour	3L	16239911	intergenic	intergenic	3R	19633734	subdued	3UTR	TRA	3393.8	0.24	precise	0	-
258	bp2	A373R7	somatic_tumour	3R	19633734	subdued	3UTR	3L	16239911	intergenic	intergenic	TRA	3393.8	0.24	precise	0	-
265	bp1	A373R7	somatic_tumour	3L	17624216	CG7510	intron	2L	19996001	CG43861	intron	TRA	2371.8	0.27	precise	0	-
265	bp2	A373R7	somatic_tumour	2L	19996001	CG43861	intron	3L	17624216	CG7510	intron	TRA	2371.8	0.27	precise	0	-
269	bp1	A373R7	somatic_tumour	3L	18100665	CG13698	intron	3L	18184554	hid	intron	DEL	83.9	0.22	imprecise	0	-
269	bp2	A373R7	somatic_tumour	3L	18184554	hid	intron	3L	18100665	CG13698	intron	DEL	83.9	0.22	imprecise	0	-
271	bp1	A373R7	somatic_tumour	3L	19022981	nkd	intron	X	1700354	intergenic	intergenic	TRA	17322.6	0.29	precise	0	-
271	bp2	A373R7	somatic_tumour	X	1700354	intergenic	intergenic	3L	19022981	nkd	intron	TRA	17322.6	0.29	precise	0	-
272	bp1	A373R7	somatic_tumour	3L	19172922	fz2	intron	3L	23321377	alpha-Cat	intron	BND	4148.5	0.21	precise	0	-
272	bp2	A373R7	somatic_tumour	3L	23321377	alpha-Cat	intron	3L	19172922	fz2	intron	BND	4148.5	0.21	precise	0	-
273	bp1	A373R7	somatic_tumour	3L	20301138	SCCRO4	intron	3L	20320497	intergenic	intergenic	DUP	19.4	0.38	imprecise	0	-
273	bp2	A373R7	somatic_tumour	3L	20320497	intergenic	intergenic	3L	20301138	SCCRO4	intron	DUP	19.4	0.38	imprecise	0	-
277	bp1	A373R7	somatic_tumour	3L	21197206	CG34261	exon_2	3L	21197822	CG33054	exon_2	BND	0.6	0.17	precise	0	-
277	bp2	A373R7	somatic_tumour	3L	21197822	CG33054	exon_2	3L	21197206	CG34261	exon_2	BND	0.6	0.17	precise	0	-
291	bp1	A373R7	somatic_tumour	3R	4816329	CG1126	5UTR	2L	1314494	intergenic	intergenic	TRA	3501.8	0.77	precise	0	-
291	bp2	A373R7	somatic_tumour	2L	1314494	intergenic	intergenic	3R	4816329	CG1126	5UTR	TRA	3501.8	0.77	precise	0	-
292	bp1	A373R7	somatic_tumour	3R	5064625	intergenic	intergenic	X	17655961	IntS2	exon_1	TRA	12591.3	0.42	precise	0	-
292	bp2	A373R7	somatic_tumour	X	17655961	IntS2	exon_1	3R	5064625	intergenic	intergenic	TRA	12591.3	0.42	precise	0	-
294	bp1	A373R7	somatic_tumour	3R	5086759	corto	5UTR	3R	5087180	intergenic	intergenic	BND	0.4	0.16	precise	0	-
294	bp2	A373R7	somatic_tumour	3R	5087180	intergenic	intergenic	3R	5086759	corto	5UTR	BND	0.4	0.16	precise	0	-
306	bp1	A373R7	somatic_tumour	3R	8438933	CG45263	intron	3R	11766133	l(3)neo38	3UTR	BND	3327.2	0.23	precise	0	-
306	bp2	A373R7	somatic_tumour	3R	11766133	l(3)neo38	3UTR	3R	8438933	CG45263	intron	BND	3327.2	0.23	precise	0	-
321	bp1	A373R7	somatic_tumour	3R	11790676	Sbf	exon_7	3L	12408736	CG32103	intron	TRA	618.1	0.29	precise	0	-
321	bp2	A373R7	somatic_tumour	3L	12408736	CG32103	intron	3R	11790676	Sbf	exon_7	TRA	618.1	0.29	precise	0	-
332	bp1	A373R7	somatic_tumour	3R	15016376	intergenic	intergenic	3L	2990399	intergenic	intergenic	TRA	12026.0	0.48	precise	0	-
332	bp2	A373R7	somatic_tumour	3L	2990399	intergenic	intergenic	3R	15016376	intergenic	intergenic	TRA	12026.0	0.48	precise	0	-
337	bp1	A373R7	somatic_tumour	3R	16086670	sxe2	exon	X	11712848	Amun	exon_3	TRA	4373.8	0.24	precise	0	-
337	bp2	A373R7	somatic_tumour	X	11712848	Amun	exon_3	3R	16086670	sxe2	exon	TRA	4373.8	0.24	precise	0	-
344	bp1	A373R7	somatic_tumour	3R	18707247	ChAT	intron	3R	18739512	Mekk1	exon_1	DUP	32.3	0.36	imprecise	0	-
344	bp2	A373R7	somatic_tumour	3R	18739512	Mekk1	exon_1	3R	18707247	ChAT	intron	DUP	32.3	0.36	imprecise	0	-
346	bp1	A373R7	somatic_tumour	3R	20957204	Atpalpha	intron	3R	20958231	Atpalpha	intron	BND	1.0	0.34	precise	0	-
346	bp2	A373R7	somatic_tumour	3R	20958231	Atpalpha	intron	3R	20957204	Atpalpha	intron	BND	1.0	0.34	precise	0	-
351	bp1	A373R7	somatic_tumour	4	372985	Hcf	3UTR	2R	5741633	intergenic	intergenic	TRA	5368.7	0.26	precise	0	-
351	bp2	A373R7	somatic_tumour	2R	5741633	intergenic	intergenic	4	372985	Hcf	3UTR	TRA	5368.7	0.26	precise	0	-
356	bp1	A373R7	somatic_tumour	3R	24453333	nAChRalpha1	intron	3R	25506393	CG5111	exon	COMPLEX_BND	1053.1	0.22	precise	0	-
356	bp2	A373R7	somatic_tumour	3R	25506393	CG5111	exon	3R	24453333	nAChRalpha1	intron	COMPLEX_BND	1053.1	0.22	precise	0	-
357	bp1	A373R7	somatic_tumour	3R	24540725	CG5789	exon_5	2R	12131662	intergenic	intergenic	TRA	12409.1	0.23	precise	0	-
357	bp2	A373R7	somatic_tumour	2R	12131662	intergenic	intergenic	3R	24540725	CG5789	exon_5	TRA	12409.1	0.23	precise	0	-
361	bp1	A373R7	somatic_tumour	3R	25312774	CG31087	intron	2L	18521808	CG10211	intron	TRA	6791.0	0.42	precise	0	-
361	bp2	A373R7	somatic_tumour	2L	18521808	CG10211	intron	3R	25312774	CG31087	intron	TRA	6791.0	0.42	precise	0	-
365	bp1	A373R7	somatic_tumour	3R	26021865	E(spl)m3-HLH	5UTR	3L	4250181	ago	exon_2	TRA	21771.7	0.39	precise	0	-
365	bp2	A373R7	somatic_tumour	3L	4250181	ago	exon_2	3R	26021865	E(spl)m3-HLH	5UTR	TRA	21771.7	0.39	precise	0	-
371	bp1	A373R7	somatic_tumour	3R	27607253	dsd	5UTR	3R	29064119	CG11873	5UTR	BND	1456.9	0.13	precise	0	-
371	bp2	A373R7	somatic_tumour	3R	29064119	CG11873	5UTR	3R	27607253	dsd	5UTR	BND	1456.9	0.13	precise	0	-
372	bp1	A373R7	somatic_tumour	3R	28812189	CG1646	exon_1	2L	19468659	intergenic	intergenic	TRA	9343.5	0.44	precise	0	-
372	bp2	A373R7	somatic_tumour	2L	19468659	intergenic	intergenic	3R	28812189	CG1646	exon_1	TRA	9343.5	0.44	precise	0	-
385	bp1	A373R7	somatic_tumour	A.pasteurianus_NC_013212.1	9356	intergenic	intergenic	2L	2619352	intergenic	intergenic	TRA	2610.0	0.48	precise	0	-
385	bp2	A373R7	somatic_tumour	2L	2619352	intergenic	intergenic	A.pasteurianus_NC_013212.1	9356	intergenic	intergenic	TRA	2610.0	0.48	precise	0	-
388	bp1	A373R7	somatic_tumour	X	774155	fz3	intron	3L	11379862	intergenic	intergenic	TRA	10605.7	0.34	precise	0	-
388	bp2	A373R7	somatic_tumour	3L	11379862	intergenic	intergenic	X	774155	fz3	intron	TRA	10605.7	0.34	precise	0	-
403	bp1	A373R7	somatic_tumour	X	10040491	Cht6	exon_12	2L	5612239	DIP-eta	intron	TRA	4428.3	0.27	precise	0	-
403	bp2	A373R7	somatic_tumour	2L	5612239	DIP-eta	intron	X	10040491	Cht6	exon_12	TRA	4428.3	0.27	precise	0	-
408	bp1	A373R7	somatic_tumour	X	11278544	CG44422	intron	2R	6761634	Epac	3UTR	TRA	4516.9	0.15	precise	0	-
408	bp2	A373R7	somatic_tumour	2R	6761634	Epac	3UTR	X	11278544	CG44422	intron	TRA	4516.9	0.15	precise	0	-
421	bp1	A373R7	somatic_tumour	X	17630206	corolla	exon	3L	22584723	CG14459	intron	TRA	4954.5	0.73	precise	0	-
421	bp2	A373R7	somatic_tumour	3L	22584723	CG14459	intron	X	17630206	corolla	exon	TRA	4954.5	0.73	precise	0	-
422	bp1	A373R7	somatic_tumour	X	18410837	intergenic	intergenic	3R	10180122	CG12814	intron	TRA	8230.7	0.4	precise	0	-
422	bp2	A373R7	somatic_tumour	3R	10180122	CG12814	intron	X	18410837	intergenic	intergenic	TRA	8230.7	0.4	precise	0	-
425	bp1	A373R7	somatic_tumour	X	19786978	CR44885	exon_3	3L	8257481	Dscam4	intron	TRA	11529.5	0.44	precise	0	-
425	bp2	A373R7	somatic_tumour	3L	8257481	Dscam4	intron	X	19786978	CR44885	exon_3	TRA	11529.5	0.44	precise	0	-
426	bp1	A373R7	somatic_tumour	X	19860618	CG15618	exon	X	19862863	CG15618	exon_5	TANDUP	2.2	0.73	precise	0	-
426	bp2	A373R7	somatic_tumour	X	19862863	CG15618	exon_5	X	19860618	CG15618	exon	TANDUP	2.2	0.73	precise	0	-
10	bp1	A373R9	somatic_tumour	2R	1328600	intergenic	intergenic	2R	1333994	intergenic	intergenic	TANDUP	5.4	0.38	imprecise	0	-
10	bp2	A373R9	somatic_tumour	2R	1333994	intergenic	intergenic	2R	1328600	intergenic	intergenic	TANDUP	5.4	0.38	imprecise	0	-
13	bp1	A373R9	somatic_tumour	2R	2953206	Scp1	intron	2R	2969730	intergenic	intergenic	DUP	16.5	0.33	imprecise	0	-
13	bp2	A373R9	somatic_tumour	2R	2969730	intergenic	intergenic	2R	2953206	Scp1	intron	DUP	16.5	0.33	imprecise	0	-
14	bp1	A373R9	somatic_tumour	2R	6086340	intergenic	intergenic	2R	6092766	EcR	exon	DUP	6.4	0.39	imprecise	0	-
14	bp2	A373R9	somatic_tumour	2R	6092766	EcR	exon	2R	6086340	intergenic	intergenic	DUP	6.4	0.39	imprecise	0	-
15	bp1	A373R9	somatic_tumour	2R	6159780	EcR	intron	2R	6173550	intergenic	intergenic	DUP	13.8	0.38	imprecise	0	-
15	bp2	A373R9	somatic_tumour	2R	6173550	intergenic	intergenic	2R	6159780	EcR	intron	DUP	13.8	0.38	imprecise	0	-
23	bp1	A373R9	somatic_tumour	3L	22784760	SPoCk	3UTR	3L	22793940	jim	3UTR	DUP	9.2	0.37	imprecise	0	-
23	bp2	A373R9	somatic_tumour	3L	22793940	jim	3UTR	3L	22784760	SPoCk	3UTR	DUP	9.2	0.37	imprecise	0	-
26	bp1	A373R9	somatic_tumour	3R	4296240	cpx	3UTR	3R	4307256	intergenic	intergenic	DUP	11.0	0.32	imprecise	0	-
26	bp2	A373R9	somatic_tumour	3R	4307256	intergenic	intergenic	3R	4296240	cpx	3UTR	DUP	11.0	0.32	imprecise	0	-
29	bp1	A373R9	somatic_tumour	3R	15169950	Gyc88E	intron	3R	15184638	Gyc88E	intron	DUP	14.7	0.34	imprecise	0	-
29	bp2	A373R9	somatic_tumour	3R	15184638	Gyc88E	intron	3R	15169950	Gyc88E	intron	DUP	14.7	0.34	imprecise	0	-
31	bp1	A373R9	somatic_tumour	3R	18413244	intergenic	intergenic	3R	18420588	fru	3UTR	DUP	7.3	0.34	imprecise	0	-
31	bp2	A373R9	somatic_tumour	3R	18420588	fru	3UTR	3R	18413244	intergenic	intergenic	DUP	7.3	0.34	imprecise	0	-
33	bp1	A373R9	somatic_tumour	3R	21584934	InR	intron	3R	21622572	E2f1	intron	DUP	37.6	0.27	imprecise	0	-
33	bp2	A373R9	somatic_tumour	3R	21622572	E2f1	intron	3R	21584934	InR	intron	DUP	37.6	0.27	imprecise	0	-
34	bp1	A373R9	somatic_tumour	3R	22007214	Eip93F	3UTR	3R	22012722	Eip93F	3UTR	DUP	5.5	0.4	imprecise	0	-
34	bp2	A373R9	somatic_tumour	3R	22012722	Eip93F	3UTR	3R	22007214	Eip93F	3UTR	DUP	5.5	0.4	imprecise	0	-
51	bp1	A373R9	somatic_tumour	4	687582	CG11360	3UTR	4	690336	CG11360	3UTR	DUP	2.8	0.48	imprecise	0	-
51	bp2	A373R9	somatic_tumour	4	690336	CG11360	3UTR	4	687582	CG11360	3UTR	DUP	2.8	0.48	imprecise	0	-
55	bp1	A373R9	somatic_tumour	4	878526	unc-13	intron	4	882198	CR44029	ncRNA	DUP	3.7	0.47	imprecise	0	-
55	bp2	A373R9	somatic_tumour	4	882198	CR44029	ncRNA	4	878526	unc-13	intron	DUP	3.7	0.47	imprecise	0	-
5	bp1	A512R17	somatic_tumour	2L	2860962	CG2991	intron	2L	2861103	CG2991	intron	BND	0.1	0.3	precise	GTGAGCT	Alt-EJ
5	bp2	A512R17	somatic_tumour	2L	2861103	CG2991	intron	2L	2860962	CG2991	intron	BND	0.1	0.3	precise	GTGAGCT	Alt-EJ
6	bp1	A512R17	somatic_tumour	2L	3040831	CG17221	exon_3	2L	3041097	CG17221	exon_3	BND	0.3	0.23	precise	GCC	Alt-EJ
6	bp2	A512R17	somatic_tumour	2L	3041097	CG17221	exon_3	2L	3040831	CG17221	exon_3	BND	0.3	0.23	precise	GCC	Alt-EJ
10	bp1	A512R17	somatic_tumour	2L	4462260	CG15443	exon	2L	4462471	CG15443	exon	BND	0.2	0.36	precise	0	NHEJ
10	bp2	A512R17	somatic_tumour	2L	4462471	CG15443	exon	2L	4462260	CG15443	exon	BND	0.2	0.36	precise	0	NHEJ
17	bp1	A512R17	somatic_tumour	2L	7263746	Wnt4	intron	2L	7264071	Wnt4	intron	BND	0.3	0.2	precise	AATGCAGAC	Alt-EJ
17	bp2	A512R17	somatic_tumour	2L	7264071	Wnt4	intron	2L	7263746	Wnt4	intron	BND	0.3	0.2	precise	AATGCAGAC	Alt-EJ
32	bp1	A512R17	somatic_tumour	2L	14750150	intergenic	intergenic	2L	14836500	intergenic	intergenic	DEL	86.3	0.24	imprecise	0	-
32	bp2	A512R17	somatic_tumour	2L	14836500	intergenic	intergenic	2L	14750150	intergenic	intergenic	DEL	86.3	0.24	imprecise	0	-
38	bp1	A512R17	somatic_tumour	2L	16090871	intergenic	intergenic	2L	16091001	intergenic	intergenic	BND	0.1	0.36	precise	0	-
38	bp2	A512R17	somatic_tumour	2L	16091001	intergenic	intergenic	2L	16090871	intergenic	intergenic	BND	0.1	0.36	precise	0	-
63	bp1	A512R17	somatic_tumour	2R	9081204	CG8083	exon_5	2R	9081323	CG8083	exon_5	BND	0.1	0.24	precise	0	-
63	bp2	A512R17	somatic_tumour	2R	9081323	CG8083	exon_5	2R	9081204	CG8083	exon_5	BND	0.1	0.24	precise	0	-
82	bp1	A512R17	somatic_tumour	2R	19397420	hts	3UTR	2R	19397694	hts	3UTR	BND	0.3	0.36	precise	0	-
82	bp2	A512R17	somatic_tumour	2R	19397694	hts	3UTR	2R	19397420	hts	3UTR	BND	0.3	0.36	precise	0	-
87	bp1	A512R17	somatic_tumour	2R	20897804	CR43160	ncRNA	2R	20898407	CR43160	exon_3	BND	0.6	0.48	precise	0	-
87	bp2	A512R17	somatic_tumour	2R	20898407	CR43160	exon_3	2R	20897804	CR43160	ncRNA	BND	0.6	0.48	precise	0	-
88	bp1	A512R17	somatic_tumour	2R	20928100	Rx	intron	2R	20967350	intergenic	intergenic	DUP	39.2	0.32	imprecise	0	-
88	bp2	A512R17	somatic_tumour	2R	20967350	intergenic	intergenic	2R	20928100	Rx	intron	DUP	39.2	0.32	imprecise	0	-
100	bp1	A512R17	somatic_tumour	3L	532148	klar	intron	3R	15826739	CG4576	intron	TRA	15294.6	0.23	precise	0	-
100	bp2	A512R17	somatic_tumour	3R	15826739	CG4576	intron	3L	532148	klar	intron	TRA	15294.6	0.23	precise	0	-
104	bp1	A512R17	somatic_tumour	3L	3888244	intergenic	intergenic	3L	3888407	intergenic	intergenic	BND	0.2	0.31	precise	0	-
104	bp2	A512R17	somatic_tumour	3L	3888407	intergenic	intergenic	3L	3888244	intergenic	intergenic	BND	0.2	0.31	precise	0	-
110	bp1	A512R17	somatic_tumour	3L	6396400	intergenic	intergenic	3R	10467400	intergenic	intergenic	TRA	4071.0	0.19	precise	0	-
110	bp2	A512R17	somatic_tumour	3R	10467400	intergenic	intergenic	3L	6396400	intergenic	intergenic	TRA	4071.0	0.19	precise	0	-
111	bp1	A512R17	somatic_tumour	3L	6577863	jv	intron	3L	11592806	intergenic	intergenic	BND	5014.9	0.31	precise	0	-
111	bp2	A512R17	somatic_tumour	3L	11592806	intergenic	intergenic	3L	6577863	jv	intron	BND	5014.9	0.31	precise	0	-
112	bp1	A512R17	somatic_tumour	3L	6609700	CG8398	exon_1	3L	6680350	intergenic	intergenic	DUP	70.7	0.25	imprecise	0	-
112	bp2	A512R17	somatic_tumour	3L	6680350	intergenic	intergenic	3L	6609700	CG8398	exon_1	DUP	70.7	0.25	imprecise	0	-
114	bp1	A512R17	somatic_tumour	3L	6740464	dikar	3UTR	3L	6740720	dikar	exon_5	BND	0.3	0.31	precise	0	NHEJ
114	bp2	A512R17	somatic_tumour	3L	6740720	dikar	exon_5	3L	6740464	dikar	3UTR	BND	0.3	0.31	precise	0	NHEJ
121	bp1	A512R17	somatic_tumour	3L	10730925	intergenic	intergenic	3L	10731250	intergenic	intergenic	BND	0.3	0.21	precise	0	-
121	bp2	A512R17	somatic_tumour	3L	10731250	intergenic	intergenic	3L	10730925	intergenic	intergenic	BND	0.3	0.21	precise	0	-
123	bp1	A512R17	somatic_tumour	3L	11397415	intergenic	intergenic	3L	11397826	CG44362	exon	BND	0.4	0.29	precise	0	-
123	bp2	A512R17	somatic_tumour	3L	11397826	CG44362	exon	3L	11397415	intergenic	intergenic	BND	0.4	0.29	precise	0	-
125	bp1	A512R17	somatic_tumour	3L	13007223	CG11263	exon	3L	13007494	CG11263	exon	BND	0.3	0.29	precise	0	-
125	bp2	A512R17	somatic_tumour	3L	13007494	CG11263	exon	3L	13007223	CG11263	exon	BND	0.3	0.29	precise	0	-
127	bp1	A512R17	somatic_tumour	3L	13514819	Liprin-beta	intron	3L	13515007	Liprin-beta	exon	BND	0.2	0.24	precise	0	-
127	bp2	A512R17	somatic_tumour	3L	13515007	Liprin-beta	exon	3L	13514819	Liprin-beta	intron	BND	0.2	0.24	precise	0	-
131	bp1	A512R17	somatic_tumour	3L	16059644	Mbs	intron	3L	16059794	Mbs	intron	BND	0.1	0.41	precise	0	-
131	bp2	A512R17	somatic_tumour	3L	16059794	Mbs	intron	3L	16059644	Mbs	intron	BND	0.1	0.41	precise	0	-
139	bp1	A512R17	somatic_tumour	3L	20502027	CG32425	intron	3L	20502614	CG32425	intron	BND	0.6	0.45	precise	0	-
139	bp2	A512R17	somatic_tumour	3L	20502614	CG32425	intron	3L	20502027	CG32425	intron	BND	0.6	0.45	precise	0	-
157	bp1	A512R17	somatic_tumour	3R	10648178	intergenic	intergenic	3R	10648881	intergenic	intergenic	COMPLEX_BND	0.7	0.19	precise	0	-
157	bp2	A512R17	somatic_tumour	3R	10648881	intergenic	intergenic	3R	10648178	intergenic	intergenic	COMPLEX_BND	0.7	0.19	precise	0	-
159	bp1	A512R17	somatic_tumour	3R	11480462	intergenic	intergenic	3R	11480630	intergenic	intergenic	BND	0.2	0.41	precise	CGCGCGG	Alt-EJ
159	bp2	A512R17	somatic_tumour	3R	11480630	intergenic	intergenic	3R	11480462	intergenic	intergenic	BND	0.2	0.41	precise	CGCGCGG	Alt-EJ
165	bp1	A512R17	somatic_tumour	3R	15764276	intergenic	intergenic	3R	15764643	intergenic	intergenic	BND	0.4	0.25	precise	0	-
165	bp2	A512R17	somatic_tumour	3R	15764643	intergenic	intergenic	3R	15764276	intergenic	intergenic	BND	0.4	0.25	precise	0	-
169	bp1	A512R17	somatic_tumour	3R	17501281	Dscam3	intron	3R	17501416	Dscam3	intron	BND	0.1	0.2	precise	0	-
169	bp2	A512R17	somatic_tumour	3R	17501416	Dscam3	intron	3R	17501281	Dscam3	intron	BND	0.1	0.2	precise	0	-
173	bp1	A512R17	somatic_tumour	3R	18465048	fru	intron	3R	18465601	fru	intron	BND	0.6	0.25	precise	0	-
173	bp2	A512R17	somatic_tumour	3R	18465601	fru	intron	3R	18465048	fru	intron	BND	0.6	0.25	precise	0	-
175	bp1	A512R17	somatic_tumour	3R	19180309	CG5555	5UTR	3R	19180780	CG31475	exon_1	BND	0.5	0.29	precise	0	-
175	bp2	A512R17	somatic_tumour	3R	19180780	CG31475	exon_1	3R	19180309	CG5555	5UTR	BND	0.5	0.29	precise	0	-
176	bp1	A512R17	somatic_tumour	3R	19335160	intergenic	intergenic	3R	19342014	intergenic	intergenic	DEL	6.8	0.3	precise	0	-
176	bp2	A512R17	somatic_tumour	3R	19342014	intergenic	intergenic	3R	19335160	intergenic	intergenic	DEL	6.8	0.3	precise	0	-
177	bp1	A512R17	somatic_tumour	3R	19718241	intergenic	intergenic	3R	19718619	intergenic	intergenic	BND	0.4	0.31	precise	0	-
177	bp2	A512R17	somatic_tumour	3R	19718619	intergenic	intergenic	3R	19718241	intergenic	intergenic	BND	0.4	0.31	precise	0	-
180	bp1	A512R17	somatic_tumour	3R	23305763	pnt	intron	3R	23306234	pnt	intron	BND	0.5	0.25	precise	0	-
180	bp2	A512R17	somatic_tumour	3R	23306234	pnt	intron	3R	23305763	pnt	intron	BND	0.5	0.25	precise	0	-
189	bp1	A512R17	somatic_tumour	3R	27718350	intergenic	intergenic	3R	27757600	intergenic	intergenic	DUP	39.2	0.31	imprecise	0	-
189	bp2	A512R17	somatic_tumour	3R	27757600	intergenic	intergenic	3R	27718350	intergenic	intergenic	DUP	39.2	0.31	imprecise	0	-
195	bp1	A512R17	somatic_tumour	3R	31012632	5-HT7	intron	2R	22971230	intergenic	intergenic	TRA	8041.4	0.22	precise	0	-
195	bp2	A512R17	somatic_tumour	2R	22971230	intergenic	intergenic	3R	31012632	5-HT7	intron	TRA	8041.4	0.22	precise	0	-
200	bp1	A512R17	somatic_tumour	4	1100210	sv	intron	4	1100555	sv	intron	BND	0.3	0.27	precise	0	-
200	bp2	A512R17	somatic_tumour	4	1100555	sv	intron	4	1100210	sv	intron	BND	0.3	0.27	precise	0	-
204	bp1	A512R17	somatic_tumour	X	14125860	intergenic	intergenic	X	14126091	intergenic	intergenic	BND	0.2	0.36	precise	0	-
204	bp2	A512R17	somatic_tumour	X	14126091	intergenic	intergenic	X	14125860	intergenic	intergenic	BND	0.2	0.36	precise	0	-
5	bp1	A512R19	somatic_tumour	X	2796789	kirre	intron	X	3312289	dnc	intron	DEL	515.0	0.75	precise	0	-
5	bp2	A512R19	somatic_tumour	X	3312289	dnc	intron	X	2796789	kirre	intron	DEL	515.0	0.75	precise	0	-
5	bp1	A512R21	somatic_tumour	3L	10725616	intergenic	intergenic	3L	10732768	intergenic	intergenic	DUP	7.2	0.38	imprecise	0	-
5	bp2	A512R21	somatic_tumour	3L	10732768	intergenic	intergenic	3L	10725616	intergenic	intergenic	DUP	7.2	0.38	imprecise	0	-
6	bp1	A512R21	somatic_tumour	3L	11261338	intergenic	intergenic	3L	11263598	intergenic	intergenic	DEL	2.3	0.31	precise	T	Alt-EJ
6	bp2	A512R21	somatic_tumour	3L	11263598	intergenic	intergenic	3L	11261338	intergenic	intergenic	DEL	2.3	0.31	precise	T	Alt-EJ
8	bp1	A512R21	somatic_tumour	3R	4162464	intergenic	intergenic	3R	4169616	intergenic	intergenic	DUP	7.2	0.4	imprecise	0	-
8	bp2	A512R21	somatic_tumour	3R	4169616	intergenic	intergenic	3R	4162464	intergenic	intergenic	DUP	7.2	0.4	imprecise	0	-
14	bp1	A512R21	somatic_tumour	4	228864	CR46065	exon_2	4	236016	CG1674	intron	DUP	7.2	0.39	imprecise	0	-
14	bp2	A512R21	somatic_tumour	4	236016	CG1674	intron	4	228864	CR46065	exon_2	DUP	7.2	0.39	imprecise	0	-
15	bp1	A512R21	somatic_tumour	4	407664	intergenic	intergenic	4	419584	intergenic	intergenic	DUP	11.9	0.36	imprecise	0	-
15	bp2	A512R21	somatic_tumour	4	419584	intergenic	intergenic	4	407664	intergenic	intergenic	DUP	11.9	0.36	imprecise	0	-
16	bp1	A512R21	somatic_tumour	X	3060852	kirre	intron	X	3177592	dnc	intron	DEL	116.0	0.85	precise	0	-
16	bp2	A512R21	somatic_tumour	X	3177592	dnc	intron	X	3060852	kirre	intron	DEL	116.0	0.85	precise	0	-
16	bp1	A512R21	somatic_tumour	X	3061056	kirre	intron	X	3201712	dnc	intron	DEL	140.7	0.84	imprecise	0	-
16	bp2	A512R21	somatic_tumour	X	3201712	dnc	intron	X	3061056	kirre	intron	DEL	140.7	0.84	imprecise	0	-
8	bp1	A512R23	somatic_tumour	2L	15932475	beat-Ib	intron	2L	15937503	beat-Ib	intron	DUP	5.0	0.33	imprecise	0	-
8	bp2	A512R23	somatic_tumour	2L	15937503	beat-Ib	intron	2L	15932475	beat-Ib	intron	DUP	5.0	0.33	imprecise	0	-
9	bp1	A512R23	somatic_tumour	2L	19171764	brat	3UTR	2L	19179306	brat	3UTR	DUP	7.5	0.33	imprecise	0	-
9	bp2	A512R23	somatic_tumour	2L	19179306	brat	3UTR	2L	19171764	brat	3UTR	DUP	7.5	0.33	imprecise	0	-
14	bp1	A512R23	somatic_tumour	2R	575706	CG45781	intron	2R	579477	CG45781	intron	DUP	3.8	0.35	imprecise	0	-
14	bp2	A512R23	somatic_tumour	2R	579477	CG45781	intron	2R	575706	CG45781	intron	DUP	3.8	0.35	imprecise	0	-
15	bp1	A512R23	somatic_tumour	2R	2952693	Scp1	intron	2R	2970291	intergenic	intergenic	DUP	17.6	0.17	imprecise	0	-
15	bp2	A512R23	somatic_tumour	2R	2970291	intergenic	intergenic	2R	2952693	Scp1	intron	DUP	17.6	0.17	imprecise	0	-
17	bp1	A512R23	somatic_tumour	2R	21763698	CR43983	ncRNA	2R	21769983	CG30395	exon	DUP	6.3	0.34	imprecise	0	-
17	bp2	A512R23	somatic_tumour	2R	21769983	CG30395	exon	2R	21763698	CR43983	ncRNA	DUP	6.3	0.34	imprecise	0	-
19	bp1	A512R23	somatic_tumour	3R	10108183	Fmr1	intron	3R	10108350	Fmr1	intron	TANDUP	0.2	0.09	precise	0	NHEJ
19	bp2	A512R23	somatic_tumour	3R	10108350	Fmr1	intron	3R	10108183	Fmr1	intron	TANDUP	0.2	0.09	precise	0	NHEJ
21	bp1	A512R23	somatic_tumour	3R	18412536	CG31122	intron	3R	18421335	fru	3UTR	DUP	8.8	0.34	imprecise	0	-
21	bp2	A512R23	somatic_tumour	3R	18421335	fru	3UTR	3R	18412536	CG31122	intron	DUP	8.8	0.34	imprecise	0	-
22	bp1	A512R23	somatic_tumour	3R	21309921	Hsromega	exon_2	3R	21316206	Hsromega	ncRNA	DUP	6.3	0.41	imprecise	0	-
22	bp2	A512R23	somatic_tumour	3R	21316206	Hsromega	ncRNA	3R	21309921	Hsromega	exon_2	DUP	6.3	0.41	imprecise	0	-
23	bp1	A512R23	somatic_tumour	3R	22072920	how	intron	3R	22079205	how	3UTR	DUP	6.3	0.34	imprecise	0	-
23	bp2	A512R23	somatic_tumour	3R	22079205	how	3UTR	3R	22072920	how	intron	DUP	6.3	0.34	imprecise	0	-
25	bp1	A512R23	somatic_tumour	3R	25348662	Fur1	intron	3R	25352433	Fur1	intron	DUP	3.8	0.34	imprecise	0	-
25	bp2	A512R23	somatic_tumour	3R	25352433	Fur1	intron	3R	25348662	Fur1	intron	DUP	3.8	0.34	imprecise	0	-
28	bp1	A512R23	somatic_tumour	3R	26141829	intergenic	intergenic	3R	26148114	intergenic	intergenic	DUP	6.3	0.27	imprecise	0	-
28	bp2	A512R23	somatic_tumour	3R	26148114	intergenic	intergenic	3R	26141829	intergenic	intergenic	DUP	6.3	0.27	imprecise	0	-
29	bp1	A512R23	somatic_tumour	3R	31842324	RhoGAP100F	3UTR	3R	31851123	heph	3UTR	DUP	8.8	0.28	imprecise	0	-
29	bp2	A512R23	somatic_tumour	3R	31851123	heph	3UTR	3R	31842324	RhoGAP100F	3UTR	DUP	8.8	0.28	imprecise	0	-
35	bp1	A512R23	somatic_tumour	X	3057571	kirre	intron	X	3277389	dnc	intron	COMPLEX_BND	219.8	0.24	precise	0	-
35	bp2	A512R23	somatic_tumour	X	3277389	dnc	intron	X	3057571	kirre	intron	COMPLEX_BND	219.8	0.24	precise	0	-
35	bp1	A512R23	somatic_tumour	X	3057571	kirre	intron	X	3277390	dnc	intron	COMPLEX_DEL	219.8	0.26	precise	0	-
35	bp2	A512R23	somatic_tumour	X	3277390	dnc	intron	X	3057571	kirre	intron	COMPLEX_DEL	219.8	0.26	precise	0	-
2	bp1	A573R25	somatic_tumour	2L	5890205	intergenic	intergenic	2L	5890721	intergenic	intergenic	DEL	0.5	0.42	precise	0	NHEJ
2	bp2	A573R25	somatic_tumour	2L	5890721	intergenic	intergenic	2L	5890205	intergenic	intergenic	DEL	0.5	0.42	precise	0	NHEJ
5	bp1	A573R25	somatic_tumour	3R	14006281	rdx	intron	3R	14008254	rdx	intron	DEL	2.0	0.41	precise	0	-
5	bp2	A573R25	somatic_tumour	3R	14008254	rdx	intron	3R	14006281	rdx	intron	DEL	2.0	0.41	precise	0	-
6	bp1	A573R25	somatic_tumour	3R	32060908	Map205	intron	3R	32061191	Map205	intron	COMPLEX_BND	0.3	0.18	precise	0	-
6	bp2	A573R25	somatic_tumour	3R	32061191	Map205	intron	3R	32060908	Map205	intron	COMPLEX_BND	0.3	0.18	precise	0	-
6	bp1	A573R25	somatic_tumour	3R	32061425	Map205	intron	3R	32069750	intergenic	intergenic	COMPLEX_DUP	8.3	0.43	imprecise	0	-
6	bp2	A573R25	somatic_tumour	3R	32069750	intergenic	intergenic	3R	32061425	Map205	intron	COMPLEX_DUP	8.3	0.43	imprecise	0	-
6	bp1	A573R25	somatic_tumour	3R	32066206	Map205	intron	3R	32068392	Map205	5UTR	COMPLEX_BND	2.2	0.61	precise	0	-
6	bp2	A573R25	somatic_tumour	3R	32068392	Map205	5UTR	3R	32066206	Map205	intron	COMPLEX_BND	2.2	0.61	precise	0	-
13	bp1	A573R25	somatic_tumour	X	3145469	N	intron	X	3148044	N	exon_2	DEL	2.6	0.85	precise	0	-
13	bp2	A573R25	somatic_tumour	X	3148044	N	exon_2	X	3145469	N	intron	DEL	2.6	0.85	precise	0	-
13	bp1	A573R25	somatic_tumour	X	3145925	N	intron	X	3148700	N	intron	DEL	2.8	0.84	imprecise	0	-
13	bp2	A573R25	somatic_tumour	X	3148700	N	intron	X	3145925	N	intron	DEL	2.8	0.84	imprecise	0	-
15	bp1	A573R25	somatic_tumour	X	4574313	CR32773	ncRNA	X	4576608	CR32773	ncRNA	DEL	2.3	0.61	precise	0	-
15	bp2	A573R25	somatic_tumour	X	4576608	CR32773	ncRNA	X	4574313	CR32773	ncRNA	DEL	2.3	0.61	precise	0	-
9	bp1	A573R27	somatic_tumour	3R	9292540	intergenic	intergenic	3R	9296160	CG8861	intron	DUP	3.6	0.29	imprecise	0	-
9	bp2	A573R27	somatic_tumour	3R	9296160	CG8861	intron	3R	9292540	intergenic	intergenic	DUP	3.6	0.29	imprecise	0	-
10	bp1	A573R27	somatic_tumour	3R	11250055	CR43283	exon_3	3R	11253675	CR43283	exon_2	DUP	3.6	0.32	imprecise	0	-
10	bp2	A573R27	somatic_tumour	3R	11253675	CR43283	exon_2	3R	11250055	CR43283	exon_3	DUP	3.6	0.32	imprecise	0	-
22	bp1	A573R27	somatic_tumour	Tomelloso	29478	intergenic	intergenic	X	3098320	kirre	intron	COMPLEX_TRA	3068.8	1.0	precise	TA	Alt-EJ
22	bp2	A573R27	somatic_tumour	X	3098320	kirre	intron	Tomelloso	29478	intergenic	intergenic	COMPLEX_TRA	3068.8	1.0	precise	TA	Alt-EJ
22	bp1	A573R27	somatic_tumour	Tomelloso	44579	intergenic	intergenic	X	3135040	N	5UTR	COMPLEX_TRA	3090.5	1.0	precise	0	NHEJ
22	bp2	A573R27	somatic_tumour	X	3135040	N	5UTR	Tomelloso	44579	intergenic	intergenic	COMPLEX_TRA	3090.5	1.0	precise	0	NHEJ
22	bp1	A573R27	somatic_tumour	X	3098318	kirre	intron	X	3125700	kirre	intron	COMPLEX_DUP	27.0	0.92	precise	0	-
22	bp2	A573R27	somatic_tumour	X	3125700	kirre	intron	X	3098318	kirre	intron	COMPLEX_DUP	27.0	0.92	precise	0	-
22	bp1	A573R27	somatic_tumour	X	3098720	kirre	intron	X	3125870	kirre	intron	COMPLEX_DUP	27.1	0.92	imprecise	0	-
22	bp2	A573R27	somatic_tumour	X	3125870	kirre	intron	X	3098720	kirre	intron	COMPLEX_DUP	27.1	0.92	imprecise	0	-
22	bp1	A573R27	somatic_tumour	X	3125694	kirre	intron	X	3126976	kirre	intron	COMPLEX_BND	1.3	0.48	precise	0	FoSTeS
22	bp2	A573R27	somatic_tumour	X	3126976	kirre	intron	X	3125694	kirre	intron	COMPLEX_BND	1.3	0.48	precise	0	FoSTeS
22	bp1	A573R27	somatic_tumour	X	3125870	kirre	intron	X	3134920	N	5UTR	COMPLEX_DEL	9.1	0.77	imprecise	0	-
22	bp2	A573R27	somatic_tumour	X	3134920	N	5UTR	X	3125870	kirre	intron	COMPLEX_DEL	9.1	0.77	imprecise	0	-
22	bp1	A573R27	somatic_tumour	X	3126976	kirre	intron	X	3135039	N	5UTR	COMPLEX_DEL	8.0	0.81	precise	0	-
22	bp2	A573R27	somatic_tumour	X	3135039	N	5UTR	X	3126976	kirre	intron	COMPLEX_DEL	8.0	0.81	precise	0	-
28	bp1	A573R27	somatic_tumour	X	17286052	Fim	3UTR	X	17294628	Fim	intron	COMPLEX_DEL	7.0	0.73	imprecise	0	-
28	bp2	A573R27	somatic_tumour	X	17294628	Fim	intron	X	17286052	Fim	3UTR	COMPLEX_DEL	7.0	0.73	imprecise	0	-
28	bp1	A573R27	somatic_tumour	X	17286052	Fim	3UTR	X	17311472	intergenic	intergenic	COMPLEX_BND	25.4	0.27	precise	C	Alt-EJ
28	bp2	A573R27	somatic_tumour	X	17311472	intergenic	intergenic	X	17286052	Fim	3UTR	COMPLEX_BND	25.4	0.27	precise	C	Alt-EJ
28	bp1	A573R27	somatic_tumour	X	17286405	Fim	3UTR	X	17294550	Fim	intron	COMPLEX_DEL	8.1	0.74	imprecise	0	-
28	bp2	A573R27	somatic_tumour	X	17294550	Fim	intron	X	17286405	Fim	3UTR	COMPLEX_DEL	8.1	0.74	imprecise	0	-
28	bp1	A573R27	somatic_tumour	X	17293197	Fim	intron	X	17294628	Fim	intron	COMPLEX_BND	1.4	0.41	precise	CT	Alt-EJ
28	bp2	A573R27	somatic_tumour	X	17294628	Fim	intron	X	17293197	Fim	intron	COMPLEX_BND	1.4	0.41	precise	CT	Alt-EJ
28	bp1	A573R27	somatic_tumour	X	17294628	Fim	intron	X	17311472	intergenic	intergenic	COMPLEX_DUP	7.0	0.84	imprecise	0	-
28	bp2	A573R27	somatic_tumour	X	17311472	intergenic	intergenic	X	17294628	Fim	intron	COMPLEX_DUP	7.0	0.84	imprecise	0	-
29	bp1	A573R27	somatic_tumour	X	17286052	Fim	3UTR	X	17311472	intergenic	intergenic	BND	25.4	0.27	precise	0	-
29	bp2	A573R27	somatic_tumour	X	17311472	intergenic	intergenic	X	17286052	Fim	3UTR	BND	25.4	0.27	precise	0	-
5	bp1	A573R29	somatic_tumour	2L	21808001	intergenic	intergenic	Tomelloso	7008	intergenic	intergenic	TRA	21801.0	0.09	precise	G	Alt-EJ
5	bp2	A573R29	somatic_tumour	Tomelloso	7008	intergenic	intergenic	2L	21808001	intergenic	intergenic	TRA	21801.0	0.09	precise	G	Alt-EJ
6	bp1	A573R29	somatic_tumour	2R	5306714	intergenic	intergenic	2R	7159623	pk	intron	BND	1852.9	0.13	precise	TATGTGAT	Alt-EJ
6	bp2	A573R29	somatic_tumour	2R	7159623	pk	intron	2R	5306714	intergenic	intergenic	BND	1852.9	0.13	precise	TATGTGAT	Alt-EJ
7	bp1	A573R29	somatic_tumour	3L	120417	intergenic	intergenic	3R	29280935	intergenic	intergenic	TRA	29160.5	0.08	precise	0	NHEJ
7	bp2	A573R29	somatic_tumour	3R	29280935	intergenic	intergenic	3L	120417	intergenic	intergenic	TRA	29160.5	0.08	precise	0	NHEJ
10	bp1	A573R29	somatic_tumour	3R	24856498	CG10899	exon	3R	24856996	CG10899	exon_2	DEL	0.5	0.26	precise	TC	Alt-EJ
10	bp2	A573R29	somatic_tumour	3R	24856996	CG10899	exon_2	3R	24856498	CG10899	exon	DEL	0.5	0.26	precise	TC	Alt-EJ
12	bp1	A573R29	somatic_tumour	Tomelloso	20114	intergenic	intergenic	2R	24646497	intergenic	intergenic	TRA	24626.4	0.1	precise	AC	Alt-EJ
12	bp2	A573R29	somatic_tumour	2R	24646497	intergenic	intergenic	Tomelloso	20114	intergenic	intergenic	TRA	24626.4	0.1	precise	AC	Alt-EJ
15	bp1	A573R29	somatic_tumour	X	3160180	N	intron	X	3207188	dnc	intron	DEL	46.0	0.87	precise	0	-
15	bp2	A573R29	somatic_tumour	X	3207188	dnc	intron	X	3160180	N	intron	DEL	46.0	0.87	precise	0	-
15	bp1	A573R29	somatic_tumour	X	3160388	N	intron	X	3207446	dnc	intron	DEL	47.1	0.87	imprecise	0	-
15	bp2	A573R29	somatic_tumour	X	3207446	dnc	intron	X	3160388	N	intron	DEL	47.1	0.87	imprecise	0	-
16	bp1	A573R29	somatic_tumour	X	3550817	DIP-alpha	intron	X	3551238	DIP-alpha	intron	BND	0.4	0.06	precise	TTTTTTT	Alt-EJ
16	bp2	A573R29	somatic_tumour	X	3551238	DIP-alpha	intron	X	3550817	DIP-alpha	intron	BND	0.4	0.06	precise	TTTTTTT	Alt-EJ
5	bp1	A573R31	somatic_tumour	3R	9834685	Teh1	intron	3R	9837100	Teh1	intron	DUP	2.4	0.36	imprecise	0	-
5	bp2	A573R31	somatic_tumour	3R	9837100	Teh1	intron	3R	9834685	Teh1	intron	DUP	2.4	0.36	imprecise	0	-
9	bp1	A573R31	somatic_tumour	3R	31043462	CanA1	exon_9	3R	31073816	Sox100B	intron	TANDUP	30.4	0.16	precise	T	Alt-EJ
9	bp2	A573R31	somatic_tumour	3R	31073816	Sox100B	intron	3R	31043462	CanA1	exon_9	TANDUP	30.4	0.16	precise	T	Alt-EJ
11	bp1	A573R31	somatic_tumour	3R	31063194	intergenic	intergenic	X	3136742	N	intron	TRA	27926.5	0.6	precise	0	-
11	bp2	A573R31	somatic_tumour	X	3136742	N	intron	3R	31063194	intergenic	intergenic	TRA	27926.5	0.6	precise	0	-
11	bp1	A573R31	somatic_tumour	X	3136742	N	intron	3R	31063202	intergenic	intergenic	TRA	27926.5	0.44	precise	0	-
11	bp2	A573R31	somatic_tumour	3R	31063202	intergenic	intergenic	X	3136742	N	intron	TRA	27926.5	0.44	precise	0	-
12	bp1	A573R31	somatic_tumour	X	1129707	CG3655	intron	X	1131480	CG3655	intron	COMPLEX_DUP	1.7	0.99	imprecise	0	-
12	bp2	A573R31	somatic_tumour	X	1131480	CG3655	intron	X	1129707	CG3655	intron	COMPLEX_DUP	1.7	0.99	imprecise	0	-
12	bp1	A573R31	somatic_tumour	X	1130471	CG3655	intron	X	1131480	CG3655	intron	COMPLEX_BND	1.0	0.18	precise	0	-
12	bp2	A573R31	somatic_tumour	X	1131480	CG3655	intron	X	1130471	CG3655	intron	COMPLEX_BND	1.0	0.18	precise	0	-
15	bp1	A573R31	somatic_tumour	X	12467035	CG42258	intron	X	12545925	CG43921	intron	DEL	78.9	0.92	imprecise	0	-
15	bp2	A573R31	somatic_tumour	X	12545925	CG43921	intron	X	12467035	CG42258	intron	DEL	78.9	0.92	imprecise	0	-
15	bp1	A573R31	somatic_tumour	X	12467160	CG42258	intron	X	12577262	CG11138	intron	DEL	110.0	0.92	imprecise	0	-
15	bp2	A573R31	somatic_tumour	X	12577262	CG11138	intron	X	12467160	CG42258	intron	DEL	110.0	0.92	imprecise	0	-
15	bp1	A573R31	somatic_tumour	X	12546730	CG43921	5UTR	X	12577320	CG11138	intron	DEL	30.6	0.93	imprecise	0	-
15	bp2	A573R31	somatic_tumour	X	12577320	CG11138	intron	X	12546730	CG43921	5UTR	DEL	30.6	0.93	imprecise	0	-
18	bp1	A573R31	somatic_tumour	X	13954981	mamo	intron	X	13983925	mamo	intron	DEL	28.9	0.45	precise	0	-
18	bp2	A573R31	somatic_tumour	X	13983925	mamo	intron	X	13954981	mamo	intron	DEL	28.9	0.45	precise	0	-
2	bp1	A573R33	somatic_tumour	2L	3314020	CG3277	exon_4	2L	14210317	Dyrk2	intron	BND	10896.3	0.02	precise	GGATG	Alt-EJ
2	bp2	A573R33	somatic_tumour	2L	14210317	Dyrk2	intron	2L	3314020	CG3277	exon_4	BND	10896.3	0.02	precise	GGATG	Alt-EJ
4	bp1	A573R33	somatic_tumour	2L	9190416	tai	intron	2L	13552614	kuz	intron	BND	4362.2	0.09	precise	0	NHEJ
4	bp2	A573R33	somatic_tumour	2L	13552614	kuz	intron	2L	9190416	tai	intron	BND	4362.2	0.09	precise	0	NHEJ
6	bp1	A573R33	somatic_tumour	2L	13540579	B4	intron	2L	13587180	kuz	intron	COMPLEX_BND	46.6	0.1	precise	0	FoSTeS
6	bp2	A573R33	somatic_tumour	2L	13587180	kuz	intron	2L	13540579	B4	intron	COMPLEX_BND	46.6	0.1	precise	0	FoSTeS
6	bp1	A573R33	somatic_tumour	2L	13540608	B4	intron	2L	13572096	kuz	intron	COMPLEX_DEL	31.5	0.27	imprecise	0	-
6	bp2	A573R33	somatic_tumour	2L	13572096	kuz	intron	2L	13540608	B4	intron	COMPLEX_DEL	31.5	0.27	imprecise	0	-
12	bp1	A573R33	somatic_tumour	2R	16371025	intergenic	intergenic	2R	17742832	Vps54L	intron	BND	1371.8	0.07	precise	GT	Alt-EJ
12	bp2	A573R33	somatic_tumour	2R	17742832	Vps54L	intron	2R	16371025	intergenic	intergenic	BND	1371.8	0.07	precise	GT	Alt-EJ
25	bp1	A573R33	somatic_tumour	3R	32014848	heph	exon_1	3R	32079331	intergenic	intergenic	DEL	64.5	0.31	imprecise	0	-
25	bp2	A573R33	somatic_tumour	3R	32079331	intergenic	intergenic	3R	32014848	heph	exon_1	DEL	64.5	0.31	imprecise	0	-
27	bp1	A573R33	somatic_tumour	X	3671510	intergenic	intergenic	X	3673441	Mnt	intron	DEL	1.9	0.75	precise	0	-
27	bp2	A573R33	somatic_tumour	X	3673441	Mnt	intron	X	3671510	intergenic	intergenic	DEL	1.9	0.75	precise	0	-
1	bp1	A785-A788R11	somatic_tumour	2L	3878663	capu	intron	2L	3881247	capu	intron	DEL	2.6	0.15	precise	0	-
1	bp2	A785-A788R11	somatic_tumour	2L	3881247	capu	intron	2L	3878663	capu	intron	DEL	2.6	0.15	precise	0	-
5	bp1	A785-A788R11	somatic_tumour	3L	0	intergenic	intergenic	3L	567690	Hipk	intron	DEL	567.7	0.27	imprecise	0	-
5	bp2	A785-A788R11	somatic_tumour	3L	567690	Hipk	intron	3L	0	intergenic	intergenic	DEL	567.7	0.27	imprecise	0	-
11	bp1	A785-A788R11	somatic_tumour	X	2988642	kirre	intron	X	3086982	kirre	intron	COMPLEX_DUP	98.3	0.92	imprecise	0	-
11	bp2	A785-A788R11	somatic_tumour	X	3086982	kirre	intron	X	2988642	kirre	intron	COMPLEX_DUP	98.3	0.92	imprecise	0	-
11	bp1	A785-A788R11	somatic_tumour	X	3086782	kirre	intron	X	3175562	CG3939	exon_1	COMPLEX_DEL	88.8	0.67	precise	0	FoSTeS
11	bp2	A785-A788R11	somatic_tumour	X	3175562	CG3939	exon_1	X	3086782	kirre	intron	COMPLEX_DEL	88.8	0.67	precise	0	FoSTeS
11	bp1	A785-A788R11	somatic_tumour	X	3113802	kirre	intron	X	3175488	CG3939	5UTR	COMPLEX_DEL	61.7	0.93	imprecise	0	-
11	bp2	A785-A788R11	somatic_tumour	X	3175488	CG3939	5UTR	X	3113802	kirre	intron	COMPLEX_DEL	61.7	0.93	imprecise	0	-
2	bp1	A785-A788R1	somatic_tumour	2L	243952	kis	intron	2L	244928	kis	intron	DEL	1.0	0.26	precise	0	NHEJ
2	bp2	A785-A788R1	somatic_tumour	2L	244928	kis	intron	2L	243952	kis	intron	DEL	1.0	0.26	precise	0	NHEJ
3	bp1	A785-A788R1	somatic_tumour	2L	9086000	Toll-4	intron	2L	9090720	intergenic	intergenic	DUP	4.7	0.33	imprecise	0	-
3	bp2	A785-A788R1	somatic_tumour	2L	9090720	intergenic	intergenic	2L	9086000	Toll-4	intron	DUP	4.7	0.33	imprecise	0	-
10	bp1	A785-A788R1	somatic_tumour	2R	24999094	zip	intron	2R	25000297	zip	intron	DEL	1.2	0.39	precise	0	NHEJ
10	bp2	A785-A788R1	somatic_tumour	2R	25000297	zip	intron	2R	24999094	zip	intron	DEL	1.2	0.39	precise	0	NHEJ
21	bp1	A785-A788R1	somatic_tumour	3R	14911511	CR46199	exon_2	3R	24435410	nAChRalpha1	intron	BND	9523.9	0.22	precise	AG	Alt-EJ
21	bp2	A785-A788R1	somatic_tumour	3R	24435410	nAChRalpha1	intron	3R	14911511	CR46199	exon_2	BND	9523.9	0.22	precise	AG	Alt-EJ
25	bp1	A785-A788R1	somatic_tumour	3R	19828917	bnl	5UTR	3R	19829842	bnl	intron	DEL	0.9	0.31	precise	0	NHEJ
25	bp2	A785-A788R1	somatic_tumour	3R	19829842	bnl	intron	3R	19828917	bnl	5UTR	DEL	0.9	0.31	precise	0	NHEJ
28	bp1	A785-A788R1	somatic_tumour	4	493427	intergenic	intergenic	4	494456	intergenic	intergenic	DEL	1.0	0.31	precise	0	NHEJ
28	bp2	A785-A788R1	somatic_tumour	4	494456	intergenic	intergenic	4	493427	intergenic	intergenic	DEL	1.0	0.31	precise	0	NHEJ
31	bp1	A785-A788R1	somatic_tumour	X	3158624	N	intron	X	3266240	dnc	intron	DEL	107.6	0.84	imprecise	0	-
31	bp2	A785-A788R1	somatic_tumour	X	3266240	dnc	intron	X	3158624	N	intron	DEL	107.6	0.84	imprecise	0	-
31	bp1	A785-A788R1	somatic_tumour	X	3159055	N	intron	X	3266215	dnc	intron	DEL	107.0	0.84	precise	0	-
31	bp2	A785-A788R1	somatic_tumour	X	3266215	dnc	intron	X	3159055	N	intron	DEL	107.0	0.84	precise	0	-
33	bp1	A785-A788R1	somatic_tumour	Y	1103536	intergenic	intergenic	Y	1127136	intergenic	intergenic	DEL	23.6	0.93	imprecise	0	-
33	bp2	A785-A788R1	somatic_tumour	Y	1127136	intergenic	intergenic	Y	1103536	intergenic	intergenic	DEL	23.6	0.93	imprecise	0	-
4	bp1	A785-A788R3	somatic_tumour	3L	17655991	intergenic	intergenic	3L	17656585	intergenic	intergenic	DEL	0.6	0.34	precise	0	NHEJ
4	bp2	A785-A788R3	somatic_tumour	3L	17656585	intergenic	intergenic	3L	17655991	intergenic	intergenic	DEL	0.6	0.34	precise	0	NHEJ
6	bp1	A785-A788R3	somatic_tumour	4	472400	Asator	exon	4	559427	Pur-alpha	intron	TANDUP	87.0	0.09	precise	AG	Alt-EJ
6	bp2	A785-A788R3	somatic_tumour	4	559427	Pur-alpha	intron	4	472400	Asator	exon	TANDUP	87.0	0.09	precise	AG	Alt-EJ
8	bp1	A785-A788R3	somatic_tumour	X	2796520	kirre	intron	X	3212294	dnc	intron	DEL	415.8	0.86	imprecise	0	-
8	bp2	A785-A788R3	somatic_tumour	X	3212294	dnc	intron	X	2796520	kirre	intron	DEL	415.8	0.86	imprecise	0	-
8	bp1	A785-A788R3	somatic_tumour	X	2797173	kirre	intron	X	3212395	dnc	intron	DEL	415.2	0.55	precise	0	FoSTeS
8	bp2	A785-A788R3	somatic_tumour	X	3212395	dnc	intron	X	2797173	kirre	intron	DEL	415.2	0.55	precise	0	FoSTeS
3	bp1	A785-A788R5	somatic_tumour	2L	20938086	intergenic	intergenic	2L	20938103	intergenic	intergenic	DEL	0.0	0.15	precise	0	NHEJ
3	bp2	A785-A788R5	somatic_tumour	2L	20938103	intergenic	intergenic	2L	20938086	intergenic	intergenic	DEL	0.0	0.15	precise	0	NHEJ
6	bp1	A785-A788R5	somatic_tumour	3L	283730	RhoGEF3	intron	3L	284290	RhoGEF3	intron	DEL	0.6	0.32	precise	CA	Alt-EJ
6	bp2	A785-A788R5	somatic_tumour	3L	284290	RhoGEF3	intron	3L	283730	RhoGEF3	intron	DEL	0.6	0.32	precise	CA	Alt-EJ
8	bp1	A785-A788R5	somatic_tumour	3R	4162935	intergenic	intergenic	3R	4171545	intergenic	intergenic	DUP	8.6	0.4	imprecise	0	-
8	bp2	A785-A788R5	somatic_tumour	3R	4171545	intergenic	intergenic	3R	4162935	intergenic	intergenic	DUP	8.6	0.4	imprecise	0	-
8	bp1	A785-A788R5	somatic_tumour	3R	4171545	intergenic	intergenic	3R	4181016	CG12581	intron	DUP	9.5	0.47	imprecise	0	-
8	bp2	A785-A788R5	somatic_tumour	3R	4181016	CG12581	intron	3R	4171545	intergenic	intergenic	DUP	9.5	0.47	imprecise	0	-
12	bp1	A785-A788R5	somatic_tumour	3R	25930184	CCAP-R	intron	3L	14290873	fz	intron	TRA	11639.3	0.09	precise	0	FoSTeS
12	bp2	A785-A788R5	somatic_tumour	3L	14290873	fz	intron	3R	25930184	CCAP-R	intron	TRA	11639.3	0.09	precise	0	FoSTeS
15	bp1	A785-A788R5	somatic_tumour	4	800730	Sox102F	3UTR	4	803313	Sox102F	5UTR	DUP	2.6	0.38	imprecise	0	-
15	bp2	A785-A788R5	somatic_tumour	4	803313	Sox102F	5UTR	4	800730	Sox102F	3UTR	DUP	2.6	0.38	imprecise	0	-
16	bp1	A785-A788R5	somatic_tumour	Y	557928	kl-3	intron	Y	561372	kl-3	intron	DUP	3.4	0.93	imprecise	0	-
16	bp2	A785-A788R5	somatic_tumour	Y	561372	kl-3	intron	Y	557928	kl-3	intron	DUP	3.4	0.93	imprecise	0	-
17	bp1	A785-A788R5	somatic_tumour	Y	1114995	intergenic	intergenic	Y	1127049	intergenic	intergenic	DEL	12.1	0.8	imprecise	0	-
17	bp2	A785-A788R5	somatic_tumour	Y	1127049	intergenic	intergenic	Y	1114995	intergenic	intergenic	DEL	12.1	0.8	imprecise	0	-
3	bp1	A785-A788R7	somatic_tumour	2L	11559201	intergenic	intergenic	2L	11579550	intergenic	intergenic	DUP	20.3	0.25	imprecise	0	-
3	bp2	A785-A788R7	somatic_tumour	2L	11579550	intergenic	intergenic	2L	11559201	intergenic	intergenic	DUP	20.3	0.25	imprecise	0	-
18	bp1	A785-A788R7	somatic_tumour	X	5149225	rg	intron	X	5149329	rg	intron	TANDUP	0.1	0.37	precise	0	NHEJ
18	bp2	A785-A788R7	somatic_tumour	X	5149329	rg	intron	X	5149225	rg	intron	TANDUP	0.1	0.37	precise	0	NHEJ
12	bp1	A785-A788R9	somatic_tumour	3L	24906840	intergenic	intergenic	3R	26861450	Lerp	exon_6	TRA	1954.6	0.05	precise	GACAAACGC	Alt-EJ
12	bp2	A785-A788R9	somatic_tumour	3R	26861450	Lerp	exon_6	3L	24906840	intergenic	intergenic	TRA	1954.6	0.05	precise	GACAAACGC	Alt-EJ
24	bp1	A785-A788R9	somatic_tumour	X	3001596	kirre	intron	X	3162198	N	intron	DEL	160.6	0.94	imprecise	0	-
24	bp2	A785-A788R9	somatic_tumour	X	3162198	N	intron	X	3001596	kirre	intron	DEL	160.6	0.94	imprecise	0	-
24	bp1	A785-A788R9	somatic_tumour	X	3002207	kirre	intron	X	3162172	N	intron	DEL	160.0	1.0	precise	0	NHEJ
24	bp2	A785-A788R9	somatic_tumour	X	3162172	N	intron	X	3002207	kirre	intron	DEL	160.0	1.0	precise	0	NHEJ
1	bp1	B241R35	somatic_tumour	2L	4113213	ed	intron	2L	4118212	intergenic	intergenic	DEL	5.0	0.31	precise	0	NHEJ
1	bp2	B241R35	somatic_tumour	2L	4118212	intergenic	intergenic	2L	4113213	ed	intron	DEL	5.0	0.31	precise	0	NHEJ
3	bp1	B241R35	somatic_tumour	3R	4137600	Gfat1	exon	3R	4173600	intergenic	intergenic	DEL	36.0	0.31	imprecise	0	-
3	bp2	B241R35	somatic_tumour	3R	4173600	intergenic	intergenic	3R	4137600	Gfat1	exon	DEL	36.0	0.31	imprecise	0	-
4	bp1	B241R35	somatic_tumour	3R	8812327	CG9837	intron	3R	8815424	CG9821	3UTR	DEL	3.1	0.26	precise	0	-
4	bp2	B241R35	somatic_tumour	3R	8815424	CG9821	3UTR	3R	8812327	CG9837	intron	DEL	3.1	0.26	precise	0	-
5	bp1	B241R35	somatic_tumour	X	3120000	kirre	intron	X	3194400	dnc	intron	DEL	74.4	0.77	imprecise	0	-
5	bp2	B241R35	somatic_tumour	X	3194400	dnc	intron	X	3120000	kirre	intron	DEL	74.4	0.77	imprecise	0	-
5	bp1	B241R35	somatic_tumour	X	3120718	kirre	intron	X	3194680	dnc	intron	DEL	73.0	0.77	precise	0	-
5	bp2	B241R35	somatic_tumour	X	3194680	dnc	intron	X	3120718	kirre	intron	DEL	73.0	0.77	precise	0	-
2	bp1	B241R37	somatic_tumour	2R	14139624	Prosap	intron	2R	14146728	intergenic	intergenic	DUP	7.1	0.4	imprecise	0	-
2	bp2	B241R37	somatic_tumour	2R	14146728	intergenic	intergenic	2R	14139624	Prosap	intron	DUP	7.1	0.4	imprecise	0	-
4	bp1	B241R37	somatic_tumour	2R	21765768	CG30395	exon_2	2R	21770208	intergenic	intergenic	DUP	4.4	0.4	imprecise	0	-
4	bp2	B241R37	somatic_tumour	2R	21770208	intergenic	intergenic	2R	21765768	CG30395	exon_2	DUP	4.4	0.4	imprecise	0	-
7	bp1	B241R37	somatic_tumour	3L	14059217	Frl	intron	3L	14059363	Frl	intron	DEL	0.1	0.21	precise	0	FoSTeS
7	bp2	B241R37	somatic_tumour	3L	14059363	Frl	intron	3L	14059217	Frl	intron	DEL	0.1	0.21	precise	0	FoSTeS
10	bp1	B241R37	somatic_tumour	3R	6894432	intergenic	intergenic	3R	6897984	Antp	3UTR	DUP	3.6	0.39	imprecise	0	-
10	bp2	B241R37	somatic_tumour	3R	6897984	Antp	3UTR	3R	6894432	intergenic	intergenic	DUP	3.6	0.39	imprecise	0	-
11	bp1	B241R37	somatic_tumour	3R	10581408	hth	3UTR	3R	10584072	hth	3UTR	DUP	2.7	0.41	imprecise	0	-
11	bp2	B241R37	somatic_tumour	3R	10584072	hth	3UTR	3R	10581408	hth	3UTR	DUP	2.7	0.41	imprecise	0	-
12	bp1	B241R37	somatic_tumour	3R	18794445	CG7720	intron	3R	20261187	cic	intron	DEL	1466.7	0.22	precise	0	FoSTeS
12	bp2	B241R37	somatic_tumour	3R	20261187	cic	intron	3R	18794445	CG7720	intron	DEL	1466.7	0.22	precise	0	FoSTeS
14	bp1	B241R37	somatic_tumour	4	542568	Thd1	3UTR	4	545232	Thd1	3UTR	DUP	2.7	0.45	imprecise	0	-
14	bp2	B241R37	somatic_tumour	4	545232	Thd1	3UTR	4	542568	Thd1	3UTR	DUP	2.7	0.45	imprecise	0	-
15	bp1	B241R37	somatic_tumour	X	3033408	kirre	intron	X	3135528	N	5UTR	DEL	102.1	0.88	imprecise	0	-
15	bp2	B241R37	somatic_tumour	X	3135528	N	5UTR	X	3033408	kirre	intron	DEL	102.1	0.88	imprecise	0	-
15	bp1	B241R37	somatic_tumour	X	3033491	kirre	intron	X	3135340	N	5UTR	DEL	101.8	0.78	precise	0	FoSTeS
15	bp2	B241R37	somatic_tumour	X	3135340	N	5UTR	X	3033491	kirre	intron	DEL	101.8	0.78	precise	0	FoSTeS
7	bp1	B241R39	somatic_tumour	2L	5318061	Ncoa6	exon_5	2L	5318184	Ncoa6	exon_5	BND	0.1	0.04	precise	GCTGCGGCTGC	Alt-EJ
7	bp2	B241R39	somatic_tumour	2L	5318184	Ncoa6	exon_5	2L	5318061	Ncoa6	exon_5	BND	0.1	0.04	precise	GCTGCGGCTGC	Alt-EJ
20	bp1	B241R39	somatic_tumour	3R	13698357	f-cup	exon_1	3R	23758748	PTPMT1	5UTR	DEL	10060.4	0.07	precise	0	-
20	bp2	B241R39	somatic_tumour	3R	23758748	PTPMT1	5UTR	3R	13698357	f-cup	exon_1	DEL	10060.4	0.07	precise	0	-
29	bp1	B241R39	somatic_tumour	4	688224	CG11360	3UTR	4	690636	CG11360	3UTR	DEL	2.4	0.32	imprecise	0	-
29	bp2	B241R39	somatic_tumour	4	690636	CG11360	3UTR	4	688224	CG11360	3UTR	DEL	2.4	0.32	imprecise	0	-
31	bp1	B241R39	somatic_tumour	X	3157127	N	intron	X	3158876	N	intron	COMPLEX_DEL	1.8	0.91	precise	0	-
31	bp2	B241R39	somatic_tumour	X	3158876	N	intron	X	3157127	N	intron	COMPLEX_DEL	1.8	0.91	precise	0	-
31	bp1	B241R39	somatic_tumour	X	3159064	N	intron	X	3390026	CG12535	3UTR	COMPLEX_BND	231.0	0.7	precise	0	-
31	bp2	B241R39	somatic_tumour	X	3390026	CG12535	3UTR	X	3159064	N	intron	COMPLEX_BND	231.0	0.7	precise	0	-
31	bp1	B241R39	somatic_tumour	X	3392440	CG12535	3UTR	X	3393763	CG12535	intron	COMPLEX_DUP	1.3	0.89	precise	0	-
31	bp2	B241R39	somatic_tumour	X	3393763	CG12535	intron	X	3392440	CG12535	3UTR	COMPLEX_DUP	1.3	0.89	precise	0	-
1	bp1	B241R41-1	somatic_tumour	Tomelloso	80619	intergenic	intergenic	3R	31946083	heph	intron	TRA	31865.5	0.16	precise	0	-
1	bp2	B241R41-1	somatic_tumour	3R	31946083	heph	intron	Tomelloso	80619	intergenic	intergenic	TRA	31865.5	0.16	precise	0	-
18	bp1	B241R41-1	somatic_tumour	2L	22750139	CG40006	intron	2L	22758484	intergenic	intergenic	DUP	8.3	0.5	imprecise	0	-
18	bp2	B241R41-1	somatic_tumour	2L	22758484	intergenic	intergenic	2L	22750139	CG40006	intron	DUP	8.3	0.5	imprecise	0	-
20	bp1	B241R41-1	somatic_tumour	2R	4901853	CG44102	exon_4	2R	4918543	Ir41a	intron	DUP	16.7	0.4	imprecise	0	-
20	bp2	B241R41-1	somatic_tumour	2R	4918543	Ir41a	intron	2R	4901853	CG44102	exon_4	DUP	16.7	0.4	imprecise	0	-
25	bp1	B241R41-1	somatic_tumour	2R	11716582	pyr	intron	2R	11717073	pyr	intron	DEL	0.5	0.06	precise	0	-
25	bp2	B241R41-1	somatic_tumour	2R	11717073	pyr	intron	2R	11716582	pyr	intron	DEL	0.5	0.06	precise	0	-
32	bp1	B241R41-1	somatic_tumour	3L	8937495	orb2	3UTR	3L	8942502	orb2	3UTR	DUP	5.0	0.48	imprecise	0	-
32	bp2	B241R41-1	somatic_tumour	3L	8942502	orb2	3UTR	3L	8937495	orb2	3UTR	DUP	5.0	0.48	imprecise	0	-
40	bp1	B241R41-1	somatic_tumour	3L	22785188	SPoCk	3UTR	3L	22796871	jim	3UTR	DUP	11.7	0.48	imprecise	0	-
40	bp2	B241R41-1	somatic_tumour	3L	22796871	jim	3UTR	3L	22785188	SPoCk	3UTR	DUP	11.7	0.48	imprecise	0	-
44	bp1	B241R41-1	somatic_tumour	3R	21309792	Hsromega	exon_2	3R	21316468	Hsromega	ncRNA	DUP	6.7	0.47	imprecise	0	-
44	bp2	B241R41-1	somatic_tumour	3R	21316468	Hsromega	ncRNA	3R	21309792	Hsromega	exon_2	DUP	6.7	0.47	imprecise	0	-
45	bp1	B241R41-1	somatic_tumour	3R	22007434	Eip93F	3UTR	3R	22014110	Eip93F	3UTR	DUP	6.7	0.49	imprecise	0	-
45	bp2	B241R41-1	somatic_tumour	3R	22014110	Eip93F	3UTR	3R	22007434	Eip93F	3UTR	DUP	6.7	0.49	imprecise	0	-
48	bp1	B241R41-1	somatic_tumour	3R	25463643	Fur1	intron	3R	25485200	CG5116	exon	TANDUP	21.6	0.06	precise	0	-
48	bp2	B241R41-1	somatic_tumour	3R	25485200	CG5116	exon	3R	25463643	Fur1	intron	TANDUP	21.6	0.06	precise	0	-
49	bp1	B241R41-1	somatic_tumour	3R	25869500	CG5890	intron	3R	25874507	Tsp96F	3UTR	DUP	5.0	0.48	imprecise	0	-
49	bp2	B241R41-1	somatic_tumour	3R	25874507	Tsp96F	3UTR	3R	25869500	CG5890	intron	DUP	5.0	0.48	imprecise	0	-
50	bp1	B241R41-1	somatic_tumour	4	126844	Ank	intron	4	133520	CG32000	intron	DUP	6.7	0.48	imprecise	0	-
50	bp2	B241R41-1	somatic_tumour	4	133520	CG32000	intron	4	126844	Ank	intron	DUP	6.7	0.48	imprecise	0	-
52	bp1	B241R41-1	somatic_tumour	4	332131	PMCA	intron	4	343814	PMCA	intron	DUP	11.7	0.47	imprecise	0	-
52	bp2	B241R41-1	somatic_tumour	4	343814	PMCA	intron	4	332131	PMCA	intron	DUP	11.7	0.47	imprecise	0	-
63	bp1	B241R41-1	somatic_tumour	4	685959	CG11360	exon	4	699311	ey	intron	DUP	13.4	0.49	imprecise	0	-
63	bp2	B241R41-1	somatic_tumour	4	699311	ey	intron	4	685959	CG11360	exon	DUP	13.4	0.49	imprecise	0	-
65	bp1	B241R41-1	somatic_tumour	4	721008	ey	3UTR	4	746043	bt	exon_23	DUP	25.0	0.43	imprecise	0	-
65	bp2	B241R41-1	somatic_tumour	4	746043	bt	exon_23	4	721008	ey	3UTR	DUP	25.0	0.43	imprecise	0	-
70	bp1	B241R41-1	somatic_tumour	4	1006407	toy	3UTR	4	1013083	PlexA	exon_10	DUP	6.7	0.47	imprecise	0	-
70	bp2	B241R41-1	somatic_tumour	4	1013083	PlexA	exon_10	4	1006407	toy	3UTR	DUP	6.7	0.47	imprecise	0	-
77	bp1	B241R41-1	somatic_tumour	X	3005994	kirre	intron	X	3239110	dnc	intron	COMPLEX_DEL	232.0	0.74	precise	0	-
77	bp2	B241R41-1	somatic_tumour	X	3239110	dnc	intron	X	3005994	kirre	intron	COMPLEX_DEL	232.0	0.74	precise	0	-
77	bp1	B241R41-1	somatic_tumour	X	3006006	kirre	intron	X	3322256	CR44886	ncRNA	COMPLEX_BND	316.2	0.21	precise	0	-
77	bp2	B241R41-1	somatic_tumour	X	3322256	CR44886	ncRNA	X	3006006	kirre	intron	COMPLEX_BND	316.2	0.21	precise	0	-
82	bp1	B241R41-1	somatic_tumour	X	9171155	mei-P26	3UTR	X	9189514	CG12115	exon	DUP	18.4	0.98	imprecise	0	-
82	bp2	B241R41-1	somatic_tumour	X	9189514	CG12115	exon	X	9171155	mei-P26	3UTR	DUP	18.4	0.98	imprecise	0	-
83	bp1	B241R41-1	somatic_tumour	X	13949502	mamo	intron	X	14039628	intergenic	intergenic	DUP	90.1	0.8	imprecise	0	-
83	bp2	B241R41-1	somatic_tumour	X	14039628	intergenic	intergenic	X	13949502	mamo	intron	DUP	90.1	0.8	imprecise	0	-
85	bp1	B241R41-1	somatic_tumour	X	17074351	wcy	intron	X	17132365	CG5004	intron	BND	58.0	0.24	precise	0	-
85	bp2	B241R41-1	somatic_tumour	X	17132365	CG5004	intron	X	17074351	wcy	intron	BND	58.0	0.24	precise	0	-
3	bp1	B241R41-2	somatic_tumour	2L	4007322	intergenic	intergenic	2L	4056552	ed	intron	DUP	49.2	0.35	imprecise	0	-
3	bp2	B241R41-2	somatic_tumour	2L	4056552	ed	intron	2L	4007322	intergenic	intergenic	DUP	49.2	0.35	imprecise	0	-
4	bp1	B241R41-2	somatic_tumour	2L	4460238	CG15435	exon	2L	4588236	dpy	intron	DEL	128.0	0.26	imprecise	0	-
4	bp2	B241R41-2	somatic_tumour	2L	4588236	dpy	intron	2L	4460238	CG15435	exon	DEL	128.0	0.26	imprecise	0	-
5	bp1	B241R41-2	somatic_tumour	2L	6821196	intergenic	intergenic	2L	16287254	crp	5UTR	BND	9466.1	0.14	precise	0	NHEJ
5	bp2	B241R41-2	somatic_tumour	2L	16287254	crp	5UTR	2L	6821196	intergenic	intergenic	BND	9466.1	0.14	precise	0	NHEJ
8	bp1	B241R41-2	somatic_tumour	2L	10975938	ATPsynG	exon	Tomelloso	3575	intergenic	intergenic	TRA	10972.4	0.51	precise	0	-
8	bp2	B241R41-2	somatic_tumour	Tomelloso	3575	intergenic	intergenic	2L	10975938	ATPsynG	exon	TRA	10972.4	0.51	precise	0	-
8	bp1	B241R41-2	somatic_tumour	3R	6410416	gpp	intron	Tomelloso	4015	intergenic	intergenic	TRA	6406.4	0.34	precise	0	-
8	bp2	B241R41-2	somatic_tumour	Tomelloso	4015	intergenic	intergenic	3R	6410416	gpp	intron	TRA	6406.4	0.34	precise	0	-
17	bp1	B241R41-2	somatic_tumour	2R	6158673	CR43904	exon_1	2R	6178365	intergenic	intergenic	DUP	19.7	0.39	imprecise	0	-
17	bp2	B241R41-2	somatic_tumour	2R	6178365	intergenic	intergenic	2R	6158673	CR43904	exon_1	DUP	19.7	0.39	imprecise	0	-
18	bp1	B241R41-2	somatic_tumour	2R	6595948	jing	intron	3R	6939919	Antp	intron	TRA	344.0	0.24	precise	0	-
18	bp2	B241R41-2	somatic_tumour	3R	6939919	Antp	intron	2R	6595948	jing	intron	TRA	344.0	0.24	precise	0	-
20	bp1	B241R41-2	somatic_tumour	2R	10490913	lola	exon	2R	10574604	psq	intron	DUP	83.7	0.27	imprecise	0	-
20	bp2	B241R41-2	somatic_tumour	2R	10574604	psq	intron	2R	10490913	lola	exon	DUP	83.7	0.27	imprecise	0	-
32	bp1	B241R41-2	somatic_tumour	3L	7803668	CG32369	exon_1	3L	7804080	CG32369	exon_1	BND	0.4	0.11	precise	0	-
32	bp2	B241R41-2	somatic_tumour	3L	7804080	CG32369	exon_1	3L	7803668	CG32369	exon_1	BND	0.4	0.11	precise	0	-
33	bp1	B241R41-2	somatic_tumour	3L	8421440	CG32354	5UTR	3L	8422069	CG32354	5UTR	TANDUP	0.6	0.12	precise	0	-
33	bp2	B241R41-2	somatic_tumour	3L	8422069	CG32354	5UTR	3L	8421440	CG32354	5UTR	TANDUP	0.6	0.12	precise	0	-
34	bp1	B241R41-2	somatic_tumour	3L	8920476	Tsp66E	intron	3L	8940168	orb2	3UTR	DUP	19.7	0.25	imprecise	0	-
34	bp2	B241R41-2	somatic_tumour	3L	8940168	orb2	3UTR	3L	8920476	Tsp66E	intron	DUP	19.7	0.25	imprecise	0	-
35	bp1	B241R41-2	somatic_tumour	3L	9914922	CG34356	intron	3L	9969075	Dronc	exon_1	DUP	54.2	0.26	imprecise	0	-
35	bp2	B241R41-2	somatic_tumour	3L	9969075	Dronc	exon_1	3L	9914922	CG34356	intron	DUP	54.2	0.26	imprecise	0	-
36	bp1	B241R41-2	somatic_tumour	3L	10338300	CR46006	ncRNA	3L	10382607	intergenic	intergenic	DUP	44.3	0.38	imprecise	0	-
36	bp2	B241R41-2	somatic_tumour	3L	10382607	intergenic	intergenic	3L	10338300	CR46006	ncRNA	DUP	44.3	0.38	imprecise	0	-
37	bp1	B241R41-2	somatic_tumour	3L	10500759	Rbfox1	intron	3L	10540143	Rbfox1	intron	DUP	39.4	0.4	imprecise	0	-
37	bp2	B241R41-2	somatic_tumour	3L	10540143	Rbfox1	intron	3L	10500759	Rbfox1	intron	DUP	39.4	0.4	imprecise	0	-
39	bp1	B241R41-2	somatic_tumour	3L	11229363	CR46050	exon_1	3L	11352438	intergenic	intergenic	DUP	123.1	0.29	imprecise	0	-
39	bp2	B241R41-2	somatic_tumour	3L	11352438	intergenic	intergenic	3L	11229363	CR46050	exon_1	DUP	123.1	0.29	imprecise	0	-
40	bp1	B241R41-2	somatic_tumour	3L	12076119	Sema-5c	intron	3L	12120426	CG11560	exon_1	DUP	44.3	0.34	imprecise	0	-
40	bp2	B241R41-2	somatic_tumour	3L	12120426	CG11560	exon_1	3L	12076119	Sema-5c	intron	DUP	44.3	0.34	imprecise	0	-
43	bp1	B241R41-2	somatic_tumour	3L	14926536	DCX-EMAP	5UTR	3L	14960997	intergenic	intergenic	DUP	34.5	0.29	imprecise	0	-
43	bp2	B241R41-2	somatic_tumour	3L	14960997	intergenic	intergenic	3L	14926536	DCX-EMAP	5UTR	DUP	34.5	0.29	imprecise	0	-
44	bp1	B241R41-2	somatic_tumour	3L	15989904	Hip14	exon_2	3L	16004673	CG5830	exon_1	DUP	14.8	0.41	imprecise	0	-
44	bp2	B241R41-2	somatic_tumour	3L	16004673	CG5830	exon_1	3L	15989904	Hip14	exon_2	DUP	14.8	0.41	imprecise	0	-
52	bp1	B241R41-2	somatic_tumour	3L	23325174	alpha-Cat	intron	3L	23344866	ND-MLRQ	intron	DUP	19.7	0.39	imprecise	0	-
52	bp2	B241R41-2	somatic_tumour	3L	23344866	ND-MLRQ	intron	3L	23325174	alpha-Cat	intron	DUP	19.7	0.39	imprecise	0	-
60	bp1	B241R41-2	somatic_tumour	3R	16275438	gish	intron	3R	16304976	intergenic	intergenic	DUP	29.5	0.39	imprecise	0	-
60	bp2	B241R41-2	somatic_tumour	3R	16304976	intergenic	intergenic	3R	16275438	gish	intron	DUP	29.5	0.39	imprecise	0	-
63	bp1	B241R41-2	somatic_tumour	3R	21272469	CG3308	intron	2L	1154922	capt	exon_2	TRA	20117.5	0.17	precise	0	-
63	bp2	B241R41-2	somatic_tumour	2L	1154922	capt	exon_2	3R	21272469	CG3308	intron	TRA	20117.5	0.17	precise	0	-
65	bp1	B241R41-2	somatic_tumour	4	127998	Ank	intron	4	231381	CG1674	intron	DUP	103.4	0.31	imprecise	0	-
65	bp2	B241R41-2	somatic_tumour	4	231381	CG1674	intron	4	127998	Ank	intron	DUP	103.4	0.31	imprecise	0	-
66	bp1	B241R41-2	somatic_tumour	4	231381	CG1674	intron	4	246150	intergenic	intergenic	DUP	14.8	0.48	imprecise	0	-
66	bp2	B241R41-2	somatic_tumour	4	246150	intergenic	intergenic	4	231381	CG1674	intron	DUP	14.8	0.48	imprecise	0	-
75	bp1	B241R41-2	somatic_tumour	4	1033830	ATPsynbeta	exon	4	1058445	Zyx	exon_5	DUP	24.6	0.44	imprecise	0	-
75	bp2	B241R41-2	somatic_tumour	4	1058445	Zyx	exon_5	4	1033830	ATPsynbeta	exon	DUP	24.6	0.44	imprecise	0	-
77	bp1	B241R41-2	somatic_tumour	4	1092906	sv	intron	4	1156905	Kif3C	intron	DUP	64.0	0.44	imprecise	0	-
77	bp2	B241R41-2	somatic_tumour	4	1156905	Kif3C	intron	4	1092906	sv	intron	DUP	64.0	0.44	imprecise	0	-
9	bp1	B241R43	somatic_tumour	2R	7381817	Dscam1	exon_1	2R	7382003	intergenic	intergenic	BND	0.2	0.11	precise	0	-
9	bp2	B241R43	somatic_tumour	2R	7382003	intergenic	intergenic	2R	7381817	Dscam1	exon_1	BND	0.2	0.11	precise	0	-
22	bp1	B241R43	somatic_tumour	3L	5322843	intergenic	intergenic	3L	5323023	intergenic	intergenic	BND	0.2	0.09	precise	0	-
22	bp2	B241R43	somatic_tumour	3L	5323023	intergenic	intergenic	3L	5322843	intergenic	intergenic	BND	0.2	0.09	precise	0	-
54	bp1	B241R43	somatic_tumour	4	131794	intergenic	intergenic	4	138918	CG32000	intron	DUP	7.1	0.35	imprecise	0	-
54	bp2	B241R43	somatic_tumour	4	138918	CG32000	intron	4	131794	intergenic	intergenic	DUP	7.1	0.35	imprecise	0	-
56	bp1	B241R43	somatic_tumour	4	443469	lgs	5UTR	4	454155	intergenic	intergenic	DUP	10.7	0.24	imprecise	0	-
56	bp2	B241R43	somatic_tumour	4	454155	intergenic	intergenic	4	443469	lgs	5UTR	DUP	10.7	0.24	imprecise	0	-
57	bp1	B241R43	somatic_tumour	X	1219691	CG3638	3UTR	X	1219821	CG3638	exon	BND	0.1	0.21	precise	0	-
57	bp2	B241R43	somatic_tumour	X	1219821	CG3638	exon	X	1219691	CG3638	3UTR	BND	0.1	0.21	precise	0	-
58	bp1	B241R43	somatic_tumour	X	16439367	CG9947	intron	X	16439415	CG9947	intron	BND	0.0	0.15	precise	0	-
58	bp2	B241R43	somatic_tumour	X	16439415	CG9947	intron	X	16439367	CG9947	intron	BND	0.0	0.15	precise	0	-
2	bp1	B241R45	somatic_tumour	3R	28657288	intergenic	intergenic	3R	31057415	dco	exon	DEL	2400.1	0.21	precise	0	FoSTeS
2	bp2	B241R45	somatic_tumour	3R	31057415	dco	exon	3R	28657288	intergenic	intergenic	DEL	2400.1	0.21	precise	0	FoSTeS
6	bp1	B241R45	somatic_tumour	X	2982420	kirre	intron	X	3191076	dnc	intron	DEL	208.7	0.85	imprecise	0	-
6	bp2	B241R45	somatic_tumour	X	3191076	dnc	intron	X	2982420	kirre	intron	DEL	208.7	0.85	imprecise	0	-
6	bp1	B241R45	somatic_tumour	X	2982553	kirre	intron	X	3192604	dnc	intron	DEL	210.1	0.24	precise	0	NHEJ
6	bp2	B241R45	somatic_tumour	X	3192604	dnc	intron	X	2982553	kirre	intron	DEL	210.1	0.24	precise	0	NHEJ
4	bp1	B241R49	somatic_tumour	2R	9886142	CG1513	intron	2R	9907779	FMRFa	intron	DUP	21.6	0.28	imprecise	0	-
4	bp2	B241R49	somatic_tumour	2R	9907779	FMRFa	intron	2R	9886142	CG1513	intron	DUP	21.6	0.28	imprecise	0	-
5	bp1	B241R49	somatic_tumour	2R	15960557	Strn-Mlck	exon_5	2R	17016068	intergenic	intergenic	BND	1055.5	0.03	precise	0	NHEJ
5	bp2	B241R49	somatic_tumour	2R	17016068	intergenic	intergenic	2R	15960557	Strn-Mlck	exon_5	BND	1055.5	0.03	precise	0	NHEJ
12	bp1	B241R49	somatic_tumour	3R	5137804	CG12589	exon_1	3R	5157474	dpr16	intron	DEL	19.7	0.27	imprecise	0	-
12	bp2	B241R49	somatic_tumour	3R	5157474	dpr16	intron	3R	5137804	CG12589	exon_1	DEL	19.7	0.27	imprecise	0	-
14	bp1	B241R49	somatic_tumour	Tomelloso	57648	intergenic	intergenic	3R	29824046	neo	exon_6	TRA	29766.4	0.12	precise	0	-
14	bp2	B241R49	somatic_tumour	3R	29824046	neo	exon_6	Tomelloso	57648	intergenic	intergenic	TRA	29766.4	0.12	precise	0	-
1	bp1	B241R51	somatic_tumour	2L	16655322	CG42389	intron	2L	16655452	CG42389	intron	BND	0.1	0.05	precise	TGCCCGCTGC	Alt-EJ
1	bp2	B241R51	somatic_tumour	2L	16655452	CG42389	intron	2L	16655322	CG42389	intron	BND	0.1	0.05	precise	TGCCCGCTGC	Alt-EJ
3	bp1	B241R51	somatic_tumour	3L	20444578	CG5910	intron	3L	20445608	CG5910	intron	DEL	1.0	0.46	precise	A	Alt-EJ
3	bp2	B241R51	somatic_tumour	3L	20445608	CG5910	intron	3L	20444578	CG5910	intron	DEL	1.0	0.46	precise	A	Alt-EJ
6	bp1	B241R51	somatic_tumour	3R	29556129	intergenic	intergenic	3R	29558982	Dr	intron	DUP	2.9	0.31	imprecise	0	-
6	bp2	B241R51	somatic_tumour	3R	29558982	Dr	intron	3R	29556129	intergenic	intergenic	DUP	2.9	0.31	imprecise	0	-
7	bp1	B241R51	somatic_tumour	X	3139251	N	intron	X	3200115	dnc	intron	DEL	60.9	0.9	imprecise	0	-
7	bp2	B241R51	somatic_tumour	X	3200115	dnc	intron	X	3139251	N	intron	DEL	60.9	0.9	imprecise	0	-
7	bp1	B241R51	somatic_tumour	X	3139518	N	intron	X	3200151	dnc	intron	DEL	60.0	0.9	precise	0	-
7	bp2	B241R51	somatic_tumour	X	3200151	dnc	intron	X	3139518	N	intron	DEL	60.0	0.9	precise	0	-
1	bp1	B241R53	somatic_tumour	2L	2692449	CG31690	intron	2L	15146570	intergenic	intergenic	BND	12454.1	0.03	precise	0	NHEJ
1	bp2	B241R53	somatic_tumour	2L	15146570	intergenic	intergenic	2L	2692449	CG31690	intron	BND	12454.1	0.03	precise	0	NHEJ
13	bp1	B241R53	somatic_tumour	3R	12903870	intergenic	intergenic	3R	12908385	intergenic	intergenic	DUP	4.5	0.46	imprecise	0	-
13	bp2	B241R53	somatic_tumour	3R	12908385	intergenic	intergenic	3R	12903870	intergenic	intergenic	DUP	4.5	0.46	imprecise	0	-
16	bp1	B241R53	somatic_tumour	X	3161667	N	intron	X	3165215	N	exon_6	DEL	3.5	0.92	precise	0	NHEJ
16	bp2	B241R53	somatic_tumour	X	3165215	N	exon_6	X	3161667	N	intron	DEL	3.5	0.92	precise	0	NHEJ
9	bp1	B241R55	somatic_tumour	3L	0	intergenic	intergenic	3L	286520	RhoGEF3	intron	DEL	286.5	0.24	imprecise	0	-
9	bp2	B241R55	somatic_tumour	3L	286520	RhoGEF3	intron	3L	0	intergenic	intergenic	DEL	286.5	0.24	imprecise	0	-
10	bp1	B241R55	somatic_tumour	3L	284238	RhoGEF3	intron	3L	286090	RhoGEF3	intron	BND	1.9	0.06	precise	0	-
10	bp2	B241R55	somatic_tumour	3L	286090	RhoGEF3	intron	3L	284238	RhoGEF3	intron	BND	1.9	0.06	precise	0	-
11	bp1	B241R55	somatic_tumour	3L	326040	Atac3	exon_6	3L	532285	klar	intron	DEL	206.2	0.24	imprecise	0	-
11	bp2	B241R55	somatic_tumour	3L	532285	klar	intron	3L	326040	Atac3	exon_6	DEL	206.2	0.24	imprecise	0	-
11	bp1	B241R55	somatic_tumour	3L	326321	Atac3	exon_6	3L	532735	klar	intron	DEL	206.4	0.32	precise	TTT	Alt-EJ
11	bp2	B241R55	somatic_tumour	3L	532735	klar	intron	3L	326321	Atac3	exon_6	DEL	206.4	0.32	precise	TTT	Alt-EJ
21	bp1	B241R55	somatic_tumour	X	3134274	kirre	3UTR	X	3140118	N	intron	DEL	5.8	0.86	precise	0	-
21	bp2	B241R55	somatic_tumour	X	3140118	N	intron	X	3134274	kirre	3UTR	DEL	5.8	0.86	precise	0	-
21	bp1	B241R55	somatic_tumour	X	3134430	kirre	3UTR	X	3140605	N	intron	DEL	6.2	0.85	imprecise	0	-
21	bp2	B241R55	somatic_tumour	X	3140605	N	intron	X	3134430	kirre	3UTR	DEL	6.2	0.85	imprecise	0	-
21	bp1	B241R57	somatic_tumour	2L	19171920	brat	3UTR	2L	19180080	CG17568	exon_2	DUP	8.2	0.46	imprecise	0	-
21	bp2	B241R57	somatic_tumour	2L	19180080	CG17568	exon_2	2L	19171920	brat	3UTR	DUP	8.2	0.46	imprecise	0	-
23	bp1	B241R57	somatic_tumour	2R	5344709	intergenic	intergenic	3L	4352897	Cip4	intron	TRA	991.8	0.11	precise	0	-
23	bp2	B241R57	somatic_tumour	3L	4352897	Cip4	intron	2R	5344709	intergenic	intergenic	TRA	991.8	0.11	precise	0	-
32	bp1	B241R57	somatic_tumour	2R	21765440	intergenic	intergenic	2R	21770880	intergenic	intergenic	DUP	5.4	0.47	imprecise	0	-
32	bp2	B241R57	somatic_tumour	2R	21770880	intergenic	intergenic	2R	21765440	intergenic	intergenic	DUP	5.4	0.47	imprecise	0	-
33	bp1	B241R57	somatic_tumour	3L	1862077	Rap1	exon_1	3R	9427693	ps	intron	TRA	7565.6	0.07	precise	0	-
33	bp2	B241R57	somatic_tumour	3R	9427693	ps	intron	3L	1862077	Rap1	exon_1	TRA	7565.6	0.07	precise	0	-
40	bp1	B241R57	somatic_tumour	3L	12126856	Ir68b	exon	2L	10898536	intergenic	intergenic	TRA	1228.3	0.05	precise	0	-
40	bp2	B241R57	somatic_tumour	2L	10898536	intergenic	intergenic	3L	12126856	Ir68b	exon	TRA	1228.3	0.05	precise	0	-
42	bp1	B241R57	somatic_tumour	3L	15052420	CG13461	exon	3L	22264473	Ddx1	exon_3	BND	7212.1	0.03	precise	0	-
42	bp2	B241R57	somatic_tumour	3L	22264473	Ddx1	exon_3	3L	15052420	CG13461	exon	BND	7212.1	0.03	precise	0	-
49	bp1	B241R57	somatic_tumour	3L	23324000	alpha-Cat	intron	3L	23341680	ND-MLRQ	intron	DUP	17.7	0.46	imprecise	0	-
49	bp2	B241R57	somatic_tumour	3L	23341680	ND-MLRQ	intron	3L	23324000	alpha-Cat	intron	DUP	17.7	0.46	imprecise	0	-
50	bp1	B241R57	somatic_tumour	3L	24719360	intergenic	intergenic	3L	24737040	scro	intron	DUP	17.7	0.47	imprecise	0	-
50	bp2	B241R57	somatic_tumour	3L	24737040	scro	intron	3L	24719360	intergenic	intergenic	DUP	17.7	0.47	imprecise	0	-
58	bp1	B241R57	somatic_tumour	3R	14619449	put	3UTR	3R	14625583	put	5UTR	TANDUP	6.1	0.03	precise	0	-
58	bp2	B241R57	somatic_tumour	3R	14625583	put	5UTR	3R	14619449	put	3UTR	TANDUP	6.1	0.03	precise	0	-
59	bp1	B241R57	somatic_tumour	3R	15170800	Mf	3UTR	3R	15184400	Gyc88E	intron	DUP	13.6	0.42	imprecise	0	-
59	bp2	B241R57	somatic_tumour	3R	15184400	Gyc88E	intron	3R	15170800	Mf	3UTR	DUP	13.6	0.42	imprecise	0	-
63	bp1	B241R57	somatic_tumour	3R	21309840	Hsromega	exon_2	3R	21316640	Hsromega	ncRNA	DUP	6.8	0.5	imprecise	0	-
63	bp2	B241R57	somatic_tumour	3R	21316640	Hsromega	ncRNA	3R	21309840	Hsromega	exon_2	DUP	6.8	0.5	imprecise	0	-
68	bp1	B241R57	somatic_tumour	4	51680	ci	exon_3	4	114240	pan	3UTR	DUP	62.6	0.46	imprecise	0	-
68	bp2	B241R57	somatic_tumour	4	114240	pan	3UTR	4	51680	ci	exon_3	DUP	62.6	0.46	imprecise	0	-
71	bp1	B241R57	somatic_tumour	4	538560	Thd1	3UTR	4	545360	Thd1	3UTR	DUP	6.8	0.49	imprecise	0	-
71	bp2	B241R57	somatic_tumour	4	545360	Thd1	3UTR	4	538560	Thd1	3UTR	DUP	6.8	0.49	imprecise	0	-
74	bp1	B241R57	somatic_tumour	4	1192720	PIP4K	exon_9	4	1199520	Mitf	intron	DUP	6.8	0.47	imprecise	0	-
74	bp2	B241R57	somatic_tumour	4	1199520	Mitf	intron	4	1192720	PIP4K	exon_9	DUP	6.8	0.47	imprecise	0	-
75	bp1	B241R57	somatic_tumour	X	3084863	kirre	intron	X	3143771	N	intron	COMPLEX_BND	58.9	0.2	precise	0	-
75	bp2	B241R57	somatic_tumour	X	3143771	N	intron	X	3084863	kirre	intron	COMPLEX_BND	58.9	0.2	precise	0	-
75	bp1	B241R57	somatic_tumour	X	3138400	N	intron	X	3196544	dnc	intron	COMPLEX_BND	58.1	0.2	precise	0	-
75	bp2	B241R57	somatic_tumour	X	3196544	dnc	intron	X	3138400	N	intron	COMPLEX_BND	58.1	0.2	precise	0	-
41	bp1	B241R59	somatic_tumour	3L	8463307	Gug	exon_5	3L	8468386	Gug	exon_7	DUP	5.1	0.47	imprecise	0	-
41	bp2	B241R59	somatic_tumour	3L	8468386	Gug	exon_7	3L	8463307	Gug	exon_5	DUP	5.1	0.47	imprecise	0	-
47	bp1	B241R59	somatic_tumour	3L	13503368	Spt20	exon_1	3L	13510140	Spt20	3UTR	DUP	6.8	0.47	imprecise	0	-
47	bp2	B241R59	somatic_tumour	3L	13510140	Spt20	3UTR	3L	13503368	Spt20	exon_1	DUP	6.8	0.47	imprecise	0	-
56	bp1	B241R59	somatic_tumour	3L	22953694	intergenic	intergenic	3L	23348163	intergenic	intergenic	DEL	394.5	0.19	imprecise	0	-
56	bp2	B241R59	somatic_tumour	3L	23348163	intergenic	intergenic	3L	22953694	intergenic	intergenic	DEL	394.5	0.19	imprecise	0	-
67	bp1	B241R59	somatic_tumour	3R	17628149	CG14325	exon_3	X	18565674	Bx	intron	TRA	937.5	0.09	precise	0	NHEJ
67	bp2	B241R59	somatic_tumour	X	18565674	Bx	intron	3R	17628149	CG14325	exon_3	TRA	937.5	0.09	precise	0	NHEJ
68	bp1	B241R59	somatic_tumour	3R	17690157	osa	exon	3R	17718938	intergenic	intergenic	DUP	28.8	0.32	imprecise	0	-
68	bp2	B241R59	somatic_tumour	3R	17718938	intergenic	intergenic	3R	17690157	osa	exon	DUP	28.8	0.32	imprecise	0	-
75	bp1	B241R59	somatic_tumour	3R	31933366	heph	intron	3R	32079331	intergenic	intergenic	DEL	146.0	0.28	imprecise	0	-
75	bp2	B241R59	somatic_tumour	3R	32079331	intergenic	intergenic	3R	31933366	heph	intron	DEL	146.0	0.28	imprecise	0	-
82	bp1	B241R59	somatic_tumour	X	3067156	CG4116	exon	X	3159711	N	intron	DEL	92.6	0.98	precise	0	-
82	bp2	B241R59	somatic_tumour	X	3159711	N	intron	X	3067156	CG4116	exon	DEL	92.6	0.98	precise	0	-
82	bp1	B241R59	somatic_tumour	X	3067716	kirre	intron	X	3160831	N	intron	DEL	93.1	0.94	imprecise	0	-
82	bp2	B241R59	somatic_tumour	X	3160831	N	intron	X	3067716	kirre	intron	DEL	93.1	0.94	imprecise	0	-
84	bp1	B241R59	somatic_tumour	X	9170981	mei-P26	3UTR	X	9191297	intergenic	intergenic	DEL	20.3	0.66	imprecise	0	-
84	bp2	B241R59	somatic_tumour	X	9191297	intergenic	intergenic	X	9170981	mei-P26	3UTR	DEL	20.3	0.66	imprecise	0	-
86	bp1	B241R59	somatic_tumour	X	19890758	Hers	intron	X	19892413	Hers	5UTR	DEL	1.7	0.52	precise	0	-
86	bp2	B241R59	somatic_tumour	X	19892413	Hers	5UTR	X	19890758	Hers	intron	DEL	1.7	0.52	precise	0	-
9	bp1	B241R61	somatic_tumour	2L	7888676	Spn28Da	exon_2	2R	7170648	pk	intron	TRA	718.0	0.04	precise	GCCAGC	Alt-EJ
9	bp2	B241R61	somatic_tumour	2R	7170648	pk	intron	2L	7888676	Spn28Da	exon_2	TRA	718.0	0.04	precise	GCCAGC	Alt-EJ
22	bp1	B241R61	somatic_tumour	2L	20336099	spir	intron	3L	2623731	Pxn	intron	TRA	17712.4	0.06	precise	0	NHEJ
22	bp2	B241R61	somatic_tumour	3L	2623731	Pxn	intron	2L	20336099	spir	intron	TRA	17712.4	0.06	precise	0	NHEJ
28	bp1	B241R61	somatic_tumour	2R	8149322	kermit	exon_1	2R	8149353	kermit	exon_1	DEL	0.0	0.22	precise	0	NHEJ
28	bp2	B241R61	somatic_tumour	2R	8149353	kermit	exon_1	2R	8149322	kermit	exon_1	DEL	0.0	0.22	precise	0	NHEJ
34	bp1	B241R61	somatic_tumour	2R	16168568	lbk	exon	3L	20283281	gogo	intron	TRA	4114.7	0.04	precise	GCCA	Alt-EJ
34	bp2	B241R61	somatic_tumour	3L	20283281	gogo	intron	2R	16168568	lbk	exon	TRA	4114.7	0.04	precise	GCCA	Alt-EJ
40	bp1	B241R61	somatic_tumour	2R	23886797	intergenic	intergenic	3R	31013782	5-HT7	intron	TRA	7127.0	0.04	precise	GGCAC	Alt-EJ
40	bp2	B241R61	somatic_tumour	3R	31013782	5-HT7	intron	2R	23886797	intergenic	intergenic	TRA	7127.0	0.04	precise	GGCAC	Alt-EJ
58	bp1	B241R61	somatic_tumour	3L	26370954	CG42598	intron	3L	26377602	intergenic	intergenic	DEL	6.6	0.25	imprecise	0	-
58	bp2	B241R61	somatic_tumour	3L	26377602	intergenic	intergenic	3L	26370954	CG42598	intron	DEL	6.6	0.25	imprecise	0	-
84	bp1	B241R61	somatic_tumour	X	3170682	N	exon	X	3194381	dnc	intron	COMPLEX_DEL	23.0	0.96	precise	0	-
84	bp2	B241R61	somatic_tumour	X	3194381	dnc	intron	X	3170682	N	exon	COMPLEX_DEL	23.0	0.96	precise	0	-
84	bp1	B241R61	somatic_tumour	X	3195652	dnc	intron	X	3199676	dnc	intron	COMPLEX_BND	4.0	0.24	precise	0	FoSTeS
84	bp2	B241R61	somatic_tumour	X	3199676	dnc	intron	X	3195652	dnc	intron	COMPLEX_BND	4.0	0.24	precise	0	FoSTeS
84	bp1	B241R61	somatic_tumour	X	3196026	dnc	intron	X	3199350	dnc	intron	COMPLEX_DUP	3.3	0.8	imprecise	0	-
84	bp2	B241R61	somatic_tumour	X	3199350	dnc	intron	X	3196026	dnc	intron	COMPLEX_DUP	3.3	0.8	imprecise	0	-
13	bp1	B241R63	somatic_tumour	3L	3775419	CG32264	intron	X	19780138	zld	exon_2	TRA	16004.7	0.1	precise	ACGA	Alt-EJ
13	bp2	B241R63	somatic_tumour	X	19780138	zld	exon_2	3L	3775419	CG32264	intron	TRA	16004.7	0.1	precise	ACGA	Alt-EJ
24	bp1	B241R63	somatic_tumour	X	3162637	N	intron	X	3165495	N	exon_6	DEL	2.9	0.35	precise	0	NHEJ
24	bp2	B241R63	somatic_tumour	X	3165495	N	exon_6	X	3162637	N	intron	DEL	2.9	0.35	precise	0	NHEJ
2	bp1	D050R01	somatic_tumour	2L	166616	spen	intron	2L	177206	spen	intron	DUP	10.6	0.32	imprecise	0	-
2	bp2	D050R01	somatic_tumour	2L	177206	spen	intron	2L	166616	spen	intron	DUP	10.6	0.32	imprecise	0	-
3	bp1	D050R01	somatic_tumour	2L	273195	mbm	exon_1	2L	273319	mbm	exon_1	BND	0.1	0.14	precise	0	NHEJ
3	bp2	D050R01	somatic_tumour	2L	273319	mbm	exon_1	2L	273195	mbm	exon_1	BND	0.1	0.14	precise	0	NHEJ
4	bp1	D050R01	somatic_tumour	2L	2407460	VGlut	intron	2L	2410284	VGlut	3UTR	DUP	2.8	0.46	imprecise	0	-
4	bp2	D050R01	somatic_tumour	2L	2410284	VGlut	3UTR	2L	2407460	VGlut	intron	DUP	2.8	0.46	imprecise	0	-
8	bp1	D050R01	somatic_tumour	2L	7890962	intergenic	intergenic	2L	7893786	Snoo	3UTR	DUP	2.8	0.48	imprecise	0	-
8	bp2	D050R01	somatic_tumour	2L	7893786	Snoo	3UTR	2L	7890962	intergenic	intergenic	DUP	2.8	0.48	imprecise	0	-
9	bp1	D050R01	somatic_tumour	2L	8183952	Piezo	intron	2L	8189600	Piezo	3UTR	DUP	5.6	0.37	imprecise	0	-
9	bp2	D050R01	somatic_tumour	2L	8189600	Piezo	3UTR	2L	8183952	Piezo	intron	DUP	5.6	0.37	imprecise	0	-
10	bp1	D050R01	somatic_tumour	2L	8668268	Sema-1a	3UTR	2L	8670386	Sema-1a	3UTR	DUP	2.1	0.48	imprecise	0	-
10	bp2	D050R01	somatic_tumour	2L	8670386	Sema-1a	3UTR	2L	8668268	Sema-1a	3UTR	DUP	2.1	0.48	imprecise	0	-
11	bp1	D050R01	somatic_tumour	2L	8775580	LManV	exon_3	2L	8777698	LManVI	3UTR	DUP	2.1	0.45	imprecise	0	-
11	bp2	D050R01	somatic_tumour	2L	8777698	LManVI	3UTR	2L	8775580	LManV	exon_3	DUP	2.1	0.45	imprecise	0	-
12	bp1	D050R01	somatic_tumour	2L	9669038	intergenic	intergenic	2L	9670576	CR44150	exon_2	TANDUP	1.5	0.02	precise	0	-
12	bp2	D050R01	somatic_tumour	2L	9670576	CR44150	exon_2	2L	9669038	intergenic	intergenic	TANDUP	1.5	0.02	precise	0	-
13	bp1	D050R01	somatic_tumour	2L	9711030	CG4364	intron	2L	9717384	Nckx30C	3UTR	DUP	6.4	0.39	imprecise	0	-
13	bp2	D050R01	somatic_tumour	2L	9717384	Nckx30C	3UTR	2L	9711030	CG4364	intron	DUP	6.4	0.39	imprecise	0	-
14	bp1	D050R01	somatic_tumour	2L	11851622	Mal-B2	exon_3	2L	11856564	Pde1c	intron	DEL	4.9	0.48	imprecise	0	-
14	bp2	D050R01	somatic_tumour	2L	11856564	Pde1c	intron	2L	11851622	Mal-B2	exon_3	DEL	4.9	0.48	imprecise	0	-
16	bp1	D050R01	somatic_tumour	2L	12806638	intergenic	intergenic	2R	21954163	intergenic	intergenic	TRA	9147.5	0.05	precise	0	NHEJ
16	bp2	D050R01	somatic_tumour	2R	21954163	intergenic	intergenic	2L	12806638	intergenic	intergenic	TRA	9147.5	0.05	precise	0	NHEJ
17	bp1	D050R01	somatic_tumour	2L	14842238	intergenic	intergenic	2L	14998970	intergenic	intergenic	DUP	156.7	0.2	imprecise	0	-
17	bp2	D050R01	somatic_tumour	2L	14998970	intergenic	intergenic	2L	14842238	intergenic	intergenic	DUP	156.7	0.2	imprecise	0	-
20	bp1	D050R01	somatic_tumour	2L	16241530	intergenic	intergenic	2L	16252826	PRL-1	intron	DUP	11.3	0.28	imprecise	0	-
20	bp2	D050R01	somatic_tumour	2L	16252826	PRL-1	intron	2L	16241530	intergenic	intergenic	DUP	11.3	0.28	imprecise	0	-
21	bp1	D050R01	somatic_tumour	2L	16459684	intergenic	intergenic	2L	16469568	dac	intron	DUP	9.9	0.32	imprecise	0	-
21	bp2	D050R01	somatic_tumour	2L	16469568	dac	intron	2L	16459684	intergenic	intergenic	DUP	9.9	0.32	imprecise	0	-
22	bp1	D050R01	somatic_tumour	2L	16940470	intergenic	intergenic	2L	17232048	beat-IIIc	intron	DUP	291.6	0.22	imprecise	0	-
22	bp2	D050R01	somatic_tumour	2L	17232048	beat-IIIc	intron	2L	16940470	intergenic	intergenic	DUP	291.6	0.22	imprecise	0	-
25	bp1	D050R01	somatic_tumour	2L	19171430	brat	3UTR	2L	19179902	CG17568	3UTR	DUP	8.5	0.35	imprecise	0	-
25	bp2	D050R01	somatic_tumour	2L	19179902	CG17568	3UTR	2L	19171430	brat	3UTR	DUP	8.5	0.35	imprecise	0	-
27	bp1	D050R01	somatic_tumour	2L	19719286	CG46244	intron	2L	19725640	CG46244	intron	DUP	6.4	0.39	imprecise	0	-
27	bp2	D050R01	somatic_tumour	2L	19725640	CG46244	intron	2L	19719286	CG46244	intron	DUP	6.4	0.39	imprecise	0	-
29	bp1	D050R01	somatic_tumour	2L	21390388	nrv3	3UTR	2L	21392506	nrv3	3UTR	DUP	2.1	0.49	imprecise	0	-
29	bp2	D050R01	somatic_tumour	2L	21392506	nrv3	3UTR	2L	21390388	nrv3	3UTR	DUP	2.1	0.49	imprecise	0	-
30	bp1	D050R01	somatic_tumour	2R	325466	intergenic	intergenic	2R	331114	CG45781	intron	DUP	5.6	0.47	imprecise	0	-
30	bp2	D050R01	somatic_tumour	2R	331114	CG45781	intron	2R	325466	intergenic	intergenic	DUP	5.6	0.47	imprecise	0	-
43	bp1	D050R01	somatic_tumour	2R	10511634	lola	intron	2R	10515870	lola	exon_6	DUP	4.2	0.44	imprecise	0	-
43	bp2	D050R01	somatic_tumour	2R	10515870	lola	exon_6	2R	10511634	lola	intron	DUP	4.2	0.44	imprecise	0	-
44	bp1	D050R01	somatic_tumour	2R	14622672	Uhg5	ncRNA	2R	14624790	intergenic	intergenic	DUP	2.1	0.45	imprecise	0	-
44	bp2	D050R01	somatic_tumour	2R	14624790	intergenic	intergenic	2R	14622672	Uhg5	ncRNA	DUP	2.1	0.45	imprecise	0	-
46	bp1	D050R01	somatic_tumour	2R	17496576	intergenic	intergenic	3L	13324060	intergenic	intergenic	TRA	4172.5	0.05	precise	C	Alt-EJ
46	bp2	D050R01	somatic_tumour	3L	13324060	intergenic	intergenic	2R	17496576	intergenic	intergenic	TRA	4172.5	0.05	precise	C	Alt-EJ
49	bp1	D050R01	somatic_tumour	2R	20844133	intergenic	intergenic	2R	20845979	intergenic	intergenic	DEL	1.8	0.37	precise	0	-
49	bp2	D050R01	somatic_tumour	2R	20845979	intergenic	intergenic	2R	20844133	intergenic	intergenic	DEL	1.8	0.37	precise	0	-
50	bp1	D050R01	somatic_tumour	2R	21042280	intergenic	intergenic	2R	21044184	intergenic	intergenic	DEL	1.9	0.1	precise	0	NHEJ
50	bp2	D050R01	somatic_tumour	2R	21044184	intergenic	intergenic	2R	21042280	intergenic	intergenic	DEL	1.9	0.1	precise	0	NHEJ
56	bp1	D050R01	somatic_tumour	3L	4091270	CG14989	3UTR	3L	4093388	CG14990	exon	DUP	2.1	0.47	imprecise	0	-
56	bp2	D050R01	somatic_tumour	3L	4093388	CG14990	exon	3L	4091270	CG14989	3UTR	DUP	2.1	0.47	imprecise	0	-
59	bp1	D050R01	somatic_tumour	3L	8937254	orb2	3UTR	3L	8940784	orb2	3UTR	DUP	3.5	0.5	imprecise	0	-
59	bp2	D050R01	somatic_tumour	3L	8940784	orb2	3UTR	3L	8937254	orb2	3UTR	DUP	3.5	0.5	imprecise	0	-
63	bp1	D050R01	somatic_tumour	3L	16031848	Notum	3UTR	3L	16033966	CG42716	exon	DUP	2.1	0.47	imprecise	0	-
63	bp2	D050R01	somatic_tumour	3L	16033966	CG42716	exon	3L	16031848	Notum	3UTR	DUP	2.1	0.47	imprecise	0	-
66	bp1	D050R01	somatic_tumour	3L	21619838	CG11307	3UTR	3L	21625486	CG7166	5UTR	DUP	5.6	0.37	imprecise	0	-
66	bp2	D050R01	somatic_tumour	3L	21625486	CG7166	5UTR	3L	21619838	CG11307	3UTR	DUP	5.6	0.37	imprecise	0	-
68	bp1	D050R01	somatic_tumour	3L	24722002	intergenic	intergenic	3L	24730474	scro	intron	DUP	8.5	0.43	imprecise	0	-
68	bp2	D050R01	somatic_tumour	3L	24730474	scro	intron	3L	24722002	intergenic	intergenic	DUP	8.5	0.43	imprecise	0	-
70	bp1	D050R01	somatic_tumour	3R	4185474	CG12581	3UTR	3R	4185746	CG12581	3UTR	BND	0.3	0.06	precise	0	NHEJ
70	bp2	D050R01	somatic_tumour	3R	4185746	CG12581	3UTR	3R	4185474	CG12581	3UTR	BND	0.3	0.06	precise	0	NHEJ
71	bp1	D050R01	somatic_tumour	3R	5455376	CG14669	intron	3R	5456532	CG14669	3UTR	COMPLEX_DEL	1.2	0.3	precise	0	NHEJ
71	bp2	D050R01	somatic_tumour	3R	5456532	CG14669	3UTR	3R	5455376	CG14669	intron	COMPLEX_DEL	1.2	0.3	precise	0	NHEJ
74	bp1	D050R01	somatic_tumour	3R	14142909	intergenic	intergenic	X	12048800	CR43960	ncRNA	TRA	2094.1	0.08	precise	TTTATGCATTATTA	Alt-EJ
74	bp2	D050R01	somatic_tumour	X	12048800	CR43960	ncRNA	3R	14142909	intergenic	intergenic	TRA	2094.1	0.08	precise	TTTATGCATTATTA	Alt-EJ
75	bp1	D050R01	somatic_tumour	3R	14562649	CG14851	exon	3R	14564494	CG8087	exon	BND	1.8	0.06	precise	0	NHEJ
75	bp2	D050R01	somatic_tumour	3R	14564494	CG8087	exon	3R	14562649	CG14851	exon	BND	1.8	0.06	precise	0	NHEJ
76	bp1	D050R01	somatic_tumour	3R	14805358	btsz	3UTR	2R	24566145	uri	exon_3	TRA	9760.8	0.04	precise	0	NHEJ
76	bp2	D050R01	somatic_tumour	2R	24566145	uri	exon_3	3R	14805358	btsz	3UTR	TRA	9760.8	0.04	precise	0	NHEJ
95	bp1	D050R01	somatic_tumour	4	335350	PMCA	intron	4	349470	PMCA	intron	DUP	14.1	0.37	imprecise	0	-
95	bp2	D050R01	somatic_tumour	4	349470	PMCA	intron	4	335350	PMCA	intron	DUP	14.1	0.37	imprecise	0	-
97	bp1	D050R01	somatic_tumour	4	866262	Gyf	exon_2	4	871204	CR43425	exon_2	DUP	4.9	0.43	imprecise	0	-
97	bp2	D050R01	somatic_tumour	4	871204	CR43425	exon_2	4	866262	Gyf	exon_2	DUP	4.9	0.43	imprecise	0	-
103	bp1	D050R01	somatic_tumour	X	3664846	AstA-R1	exon_11	X	3666964	intergenic	intergenic	DUP	2.1	0.48	imprecise	0	-
103	bp2	D050R01	somatic_tumour	X	3666964	intergenic	intergenic	X	3664846	AstA-R1	exon_11	DUP	2.1	0.48	imprecise	0	-
110	bp1	D050R01	somatic_tumour	X	8046282	fs(1)h	3UTR	X	8049106	fs(1)h	3UTR	DUP	2.8	0.46	imprecise	0	-
110	bp2	D050R01	somatic_tumour	X	8049106	fs(1)h	3UTR	X	8046282	fs(1)h	3UTR	DUP	2.8	0.46	imprecise	0	-
112	bp1	D050R01	somatic_tumour	X	10705784	X11Lbeta	exon_8	X	10712844	CG32676	3UTR	DUP	7.1	0.37	imprecise	0	-
112	bp2	D050R01	somatic_tumour	X	10712844	CG32676	3UTR	X	10705784	X11Lbeta	exon_8	DUP	7.1	0.37	imprecise	0	-
114	bp1	D050R01	somatic_tumour	X	11806438	Hsc70-3	intron	X	11809262	CG1578	3UTR	DUP	2.8	0.46	imprecise	0	-
114	bp2	D050R01	somatic_tumour	X	11809262	CG1578	3UTR	X	11806438	Hsc70-3	intron	DUP	2.8	0.46	imprecise	0	-
116	bp1	D050R01	somatic_tumour	X	12679760	Tis11	3UTR	X	12685408	Smr	3UTR	DUP	5.6	0.46	imprecise	0	-
116	bp2	D050R01	somatic_tumour	X	12685408	Smr	3UTR	X	12679760	Tis11	3UTR	DUP	5.6	0.46	imprecise	0	-
121	bp1	D050R01	somatic_tumour	X	16426329	hang	intron	X	16426886	hang	intron	DEL	0.6	0.2	precise	0	NHEJ
121	bp2	D050R01	somatic_tumour	X	16426886	hang	intron	X	16426329	hang	intron	DEL	0.6	0.2	precise	0	NHEJ
2	bp1	D050R05	somatic_tumour	2L	11851140	Mal-B2	exon_2	2L	11856700	Pde1c	intron	DEL	5.6	0.43	imprecise	0	-
2	bp2	D050R05	somatic_tumour	2L	11856700	Pde1c	intron	2L	11851140	Mal-B2	exon_2	DEL	5.6	0.43	imprecise	0	-
4	bp1	D050R05	somatic_tumour	2L	15982220	intergenic	intergenic	2L	16136232	intergenic	intergenic	DUP	154.0	0.15	imprecise	0	-
4	bp2	D050R05	somatic_tumour	2L	16136232	intergenic	intergenic	2L	15982220	intergenic	intergenic	DUP	154.0	0.15	imprecise	0	-
5	bp1	D050R05	somatic_tumour	2L	16947992	CR44393	ncRNA	2L	17285484	intergenic	intergenic	DUP	337.5	0.17	imprecise	0	-
5	bp2	D050R05	somatic_tumour	2L	17285484	intergenic	intergenic	2L	16947992	CR44393	ncRNA	DUP	337.5	0.17	imprecise	0	-
12	bp1	D050R05	somatic_tumour	3L	2191516	CG5707	intron	3L	3432011	eIF5B	intron	BND	1240.5	0.05	precise	AAT	Alt-EJ
12	bp2	D050R05	somatic_tumour	3L	3432011	eIF5B	intron	3L	2191516	CG5707	intron	BND	1240.5	0.05	precise	AAT	Alt-EJ
19	bp1	D050R05	somatic_tumour	3R	4163328	intergenic	intergenic	3R	4178896	CG12581	intron	DUP	15.6	0.35	imprecise	0	-
19	bp2	D050R05	somatic_tumour	3R	4178896	CG12581	intron	3R	4163328	intergenic	intergenic	DUP	15.6	0.35	imprecise	0	-
24	bp1	D050R05	somatic_tumour	3R	13534558	intergenic	intergenic	Tomelloso	60394	intergenic	intergenic	TRA	13474.2	0.11	precise	AA	Alt-EJ
24	bp2	D050R05	somatic_tumour	Tomelloso	60394	intergenic	intergenic	3R	13534558	intergenic	intergenic	TRA	13474.2	0.11	precise	AA	Alt-EJ
28	bp1	D050R05	somatic_tumour	4	556	intergenic	intergenic	4	5004	JYalpha	3UTR	DUP	4.4	0.29	imprecise	0	-
28	bp2	D050R05	somatic_tumour	4	5004	JYalpha	3UTR	4	556	intergenic	intergenic	DUP	4.4	0.29	imprecise	0	-
1	bp1	D050R07-1	somatic_tumour	2L	11851125	Mal-B2	exon_2	2L	11856735	Pde1c	intron	DEL	5.6	0.42	imprecise	0	-
1	bp2	D050R07-1	somatic_tumour	2L	11856735	Pde1c	intron	2L	11851125	Mal-B2	exon_2	DEL	5.6	0.42	imprecise	0	-
2	bp1	D050R07-1	somatic_tumour	2L	14829474	intergenic	intergenic	2L	14955138	CG42313	intron	DUP	125.7	0.15	imprecise	0	-
2	bp2	D050R07-1	somatic_tumour	2L	14955138	CG42313	intron	2L	14829474	intergenic	intergenic	DUP	125.7	0.15	imprecise	0	-
3	bp1	D050R07-1	somatic_tumour	2L	15918375	beat-Ib	intron	2L	16191021	intergenic	intergenic	DUP	272.6	0.15	imprecise	0	-
3	bp2	D050R07-1	somatic_tumour	2L	16191021	intergenic	intergenic	2L	15918375	beat-Ib	intron	DUP	272.6	0.15	imprecise	0	-
4	bp1	D050R07-1	somatic_tumour	2L	16932102	intergenic	intergenic	2L	17268702	intergenic	intergenic	DUP	336.6	0.15	imprecise	0	-
4	bp2	D050R07-1	somatic_tumour	2L	17268702	intergenic	intergenic	2L	16932102	intergenic	intergenic	DUP	336.6	0.15	imprecise	0	-
12	bp1	D050R07-1	somatic_tumour	2R	14340937	Shroom	intron	2R	14342082	Shroom	5UTR	DEL	1.1	0.27	precise	0	NHEJ
12	bp2	D050R07-1	somatic_tumour	2R	14342082	Shroom	5UTR	2R	14340937	Shroom	intron	DEL	1.1	0.27	precise	0	NHEJ
15	bp1	D050R07-1	somatic_tumour	2R	21033949	intergenic	intergenic	2R	21034182	intergenic	intergenic	DEL	0.2	0.25	precise	TTA	Alt-EJ
15	bp2	D050R07-1	somatic_tumour	2R	21034182	intergenic	intergenic	2R	21033949	intergenic	intergenic	DEL	0.2	0.25	precise	TTA	Alt-EJ
21	bp1	D050R07-1	somatic_tumour	3L	15021983	Sytbeta	intron	3L	15023631	CG32148	exon_1	BND	1.6	0.13	precise	0	NHEJ
21	bp2	D050R07-1	somatic_tumour	3L	15023631	CG32148	exon_1	3L	15021983	Sytbeta	intron	BND	1.6	0.13	precise	0	NHEJ
24	bp1	D050R07-1	somatic_tumour	3L	19684368	CG8765	3UTR	3L	19687734	Gbeta76C	exon_1	DUP	3.4	0.43	imprecise	0	-
24	bp2	D050R07-1	somatic_tumour	3L	19687734	Gbeta76C	exon_1	3L	19684368	CG8765	3UTR	DUP	3.4	0.43	imprecise	0	-
31	bp1	D050R07-1	somatic_tumour	3R	30472992	PH4alphaEFB	intron	3R	30478842	spdo	3UTR	DEL	5.8	0.32	precise	0	NHEJ
31	bp2	D050R07-1	somatic_tumour	3R	30478842	spdo	3UTR	3R	30472992	PH4alphaEFB	intron	DEL	5.8	0.32	precise	0	NHEJ
39	bp1	D050R07-1	somatic_tumour	X	12752270	CR44619	exon_1	X	12754313	CR44619	exon_2	DEL	2.0	0.36	precise	0	NHEJ
39	bp2	D050R07-1	somatic_tumour	X	12754313	CR44619	exon_2	X	12752270	CR44619	exon_1	DEL	2.0	0.36	precise	0	NHEJ
40	bp1	D050R07-1	somatic_tumour	X	13220924	mew	intron	X	13221024	mew	intron	DEL	0.1	0.19	precise	0	NHEJ
40	bp2	D050R07-1	somatic_tumour	X	13221024	mew	intron	X	13220924	mew	intron	DEL	0.1	0.19	precise	0	NHEJ
1	bp1	D050R07-2	somatic_tumour	2L	11851125	Mal-B2	exon_2	2L	11856735	Pde1c	intron	DEL	5.6	0.44	imprecise	0	-
1	bp2	D050R07-2	somatic_tumour	2L	11856735	Pde1c	intron	2L	11851125	Mal-B2	exon_2	DEL	5.6	0.44	imprecise	0	-
3	bp1	D050R07-2	somatic_tumour	2L	17232237	beat-IIIc	intron	2L	17233920	beat-IIIc	intron	DUP	1.7	0.46	imprecise	0	-
3	bp2	D050R07-2	somatic_tumour	2L	17233920	beat-IIIc	intron	2L	17232237	beat-IIIc	intron	DUP	1.7	0.46	imprecise	0	-
6	bp1	D050R07-2	somatic_tumour	2R	14340937	Shroom	intron	2R	14342082	Shroom	5UTR	DEL	1.1	0.23	precise	0	NHEJ
6	bp2	D050R07-2	somatic_tumour	2R	14342082	Shroom	5UTR	2R	14340937	Shroom	intron	DEL	1.1	0.23	precise	0	NHEJ
7	bp1	D050R07-2	somatic_tumour	2R	21033949	intergenic	intergenic	2R	21034182	intergenic	intergenic	DEL	0.2	0.22	precise	TTA	Alt-EJ
7	bp2	D050R07-2	somatic_tumour	2R	21034182	intergenic	intergenic	2R	21033949	intergenic	intergenic	DEL	0.2	0.22	precise	TTA	Alt-EJ
9	bp1	D050R07-2	somatic_tumour	3L	71808	intergenic	intergenic	3L	77979	intergenic	intergenic	DUP	6.2	0.5	imprecise	0	-
9	bp2	D050R07-2	somatic_tumour	3L	77979	intergenic	intergenic	3L	71808	intergenic	intergenic	DUP	6.2	0.5	imprecise	0	-
10	bp1	D050R07-2	somatic_tumour	3L	228888	CR42862	exon_4	3L	233937	E(bx)	3UTR	DUP	5.0	0.42	imprecise	0	-
10	bp2	D050R07-2	somatic_tumour	3L	233937	E(bx)	3UTR	3L	228888	CR42862	exon_4	DUP	5.0	0.42	imprecise	0	-
11	bp1	D050R07-2	somatic_tumour	3L	475358	klar	intron	3R	29795810	CG7837	3UTR	TRA	29320.5	0.04	precise	GTGATCACA	Alt-EJ
11	bp2	D050R07-2	somatic_tumour	3R	29795810	CG7837	3UTR	3L	475358	klar	intron	TRA	29320.5	0.04	precise	GTGATCACA	Alt-EJ
12	bp1	D050R07-2	somatic_tumour	3L	1037850	bab1	3UTR	3L	1040655	bab1	intron	DUP	2.8	0.32	imprecise	0	-
12	bp2	D050R07-2	somatic_tumour	3L	1040655	bab1	intron	3L	1037850	bab1	3UTR	DUP	2.8	0.32	imprecise	0	-
15	bp1	D050R07-2	somatic_tumour	3L	1924997	Dbx	intron	3L	1925103	Dbx	intron	DEL	0.1	0.44	precise	0	FoSTeS
15	bp2	D050R07-2	somatic_tumour	3L	1925103	Dbx	intron	3L	1924997	Dbx	intron	DEL	0.1	0.44	precise	0	FoSTeS
16	bp1	D050R07-2	somatic_tumour	3L	2181268	intergenic	intergenic	3L	2181408	intergenic	intergenic	DEL	0.1	0.32	precise	0	NHEJ
16	bp2	D050R07-2	somatic_tumour	3L	2181408	intergenic	intergenic	3L	2181268	intergenic	intergenic	DEL	0.1	0.32	precise	0	NHEJ
18	bp1	D050R07-2	somatic_tumour	3L	4398351	slow	intron	3L	4398478	slow	intron	DEL	0.1	0.23	precise	T	Alt-EJ
18	bp2	D050R07-2	somatic_tumour	3L	4398478	slow	intron	3L	4398351	slow	intron	DEL	0.1	0.23	precise	T	Alt-EJ
20	bp1	D050R07-2	somatic_tumour	3L	4755736	CR43881	ncRNA	3L	4756178	RhoGEF64C	intron	DEL	0.4	0.29	precise	0	FoSTeS
20	bp2	D050R07-2	somatic_tumour	3L	4756178	RhoGEF64C	intron	3L	4755736	CR43881	ncRNA	DEL	0.4	0.29	precise	0	FoSTeS
21	bp1	D050R07-2	somatic_tumour	3L	5901977	QC	exon_3	3L	5902395	QC	exon_1	DEL	0.4	0.33	precise	0	NHEJ
21	bp2	D050R07-2	somatic_tumour	3L	5902395	QC	exon_1	3L	5901977	QC	exon_3	DEL	0.4	0.33	precise	0	NHEJ
22	bp1	D050R07-2	somatic_tumour	3L	7865604	Pdp1	intron	3L	7865704	Pdp1	intron	DEL	0.1	0.42	precise	0	FoSTeS
22	bp2	D050R07-2	somatic_tumour	3L	7865704	Pdp1	intron	3L	7865604	Pdp1	intron	DEL	0.1	0.42	precise	0	FoSTeS
25	bp1	D050R07-2	somatic_tumour	3L	15021983	Sytbeta	intron	3L	15023631	CG32148	exon_1	BND	1.6	0.11	precise	0	NHEJ
25	bp2	D050R07-2	somatic_tumour	3L	15023631	CG32148	exon_1	3L	15021983	Sytbeta	intron	BND	1.6	0.11	precise	0	NHEJ
30	bp1	D050R07-2	somatic_tumour	3R	30472992	PH4alphaEFB	intron	3R	30478842	spdo	3UTR	DEL	5.8	0.28	precise	0	NHEJ
30	bp2	D050R07-2	somatic_tumour	3R	30478842	spdo	3UTR	3R	30472992	PH4alphaEFB	intron	DEL	5.8	0.28	precise	0	NHEJ
32	bp1	D050R07-2	somatic_tumour	3R	31112499	intergenic	intergenic	3R	31134939	Gycbeta100B	intron	DEL	22.4	0.38	imprecise	0	-
32	bp2	D050R07-2	somatic_tumour	3R	31134939	Gycbeta100B	intron	3R	31112499	intergenic	intergenic	DEL	22.4	0.38	imprecise	0	-
34	bp1	D050R07-2	somatic_tumour	4	561	intergenic	intergenic	4	5049	intergenic	intergenic	DUP	4.5	0.4	imprecise	0	-
34	bp2	D050R07-2	somatic_tumour	4	5049	intergenic	intergenic	4	561	intergenic	intergenic	DUP	4.5	0.4	imprecise	0	-
37	bp1	D050R07-2	somatic_tumour	X	705738	sdk	intron	X	710787	sdk	intron	DEL	5.0	0.42	imprecise	0	-
37	bp2	D050R07-2	somatic_tumour	X	710787	sdk	intron	X	705738	sdk	intron	DEL	5.0	0.42	imprecise	0	-
38	bp1	D050R07-2	somatic_tumour	X	1446258	futsch	exon_6	X	1482723	sta	exon_2	DUP	36.5	0.25	imprecise	0	-
38	bp2	D050R07-2	somatic_tumour	X	1482723	sta	exon_2	X	1446258	futsch	exon_6	DUP	36.5	0.25	imprecise	0	-
40	bp1	D050R07-2	somatic_tumour	X	4097544	intergenic	intergenic	X	4125594	tyf	exon_7	DUP	28.1	0.27	imprecise	0	-
40	bp2	D050R07-2	somatic_tumour	X	4125594	tyf	exon_7	X	4097544	intergenic	intergenic	DUP	28.1	0.27	imprecise	0	-
41	bp1	D050R07-2	somatic_tumour	X	6979579	ogre	intron	X	6979975	ogre	intron	DEL	0.4	0.39	precise	0	FoSTeS
41	bp2	D050R07-2	somatic_tumour	X	6979975	ogre	intron	X	6979579	ogre	intron	DEL	0.4	0.39	precise	0	FoSTeS
42	bp1	D050R07-2	somatic_tumour	X	7034379	CG12541	intron	X	7046160	CG12541	intron	DEL	11.8	0.35	imprecise	0	-
42	bp2	D050R07-2	somatic_tumour	X	7046160	CG12541	intron	X	7034379	CG12541	intron	DEL	11.8	0.35	imprecise	0	-
43	bp1	D050R07-2	somatic_tumour	X	11110605	Hsp60A	exon_2	X	11127435	Gtp-bp	exon	DUP	16.8	0.22	imprecise	0	-
43	bp2	D050R07-2	somatic_tumour	X	11127435	Gtp-bp	exon	X	11110605	Hsp60A	exon_2	DUP	16.8	0.22	imprecise	0	-
44	bp1	D050R07-2	somatic_tumour	X	11165921	intergenic	intergenic	X	11166208	intergenic	intergenic	DEL	0.3	0.29	precise	0	FoSTeS
44	bp2	D050R07-2	somatic_tumour	X	11166208	intergenic	intergenic	X	11165921	intergenic	intergenic	DEL	0.3	0.29	precise	0	FoSTeS
46	bp1	D050R07-2	somatic_tumour	X	12752270	CR44619	exon_1	X	12754313	CR44619	exon_2	DEL	2.0	0.32	precise	0	NHEJ
46	bp2	D050R07-2	somatic_tumour	X	12754313	CR44619	exon_2	X	12752270	CR44619	exon_1	DEL	2.0	0.32	precise	0	NHEJ
47	bp1	D050R07-2	somatic_tumour	X	13220924	mew	intron	X	13221024	mew	intron	DEL	0.1	0.17	precise	0	NHEJ
47	bp2	D050R07-2	somatic_tumour	X	13221024	mew	intron	X	13220924	mew	intron	DEL	0.1	0.17	precise	0	NHEJ
48	bp1	D050R07-2	somatic_tumour	X	14200593	CG11590	exon	X	14202276	l(1)G0007	exon_1	DUP	1.7	0.35	imprecise	0	-
48	bp2	D050R07-2	somatic_tumour	X	14202276	l(1)G0007	exon_1	X	14200593	CG11590	exon	DUP	1.7	0.35	imprecise	0	-
50	bp1	D050R07-2	somatic_tumour	X	19160794	RhoGAP18B	intron	X	19162573	RhoGAP18B	intron	DEL	1.8	0.27	precise	0	-
50	bp2	D050R07-2	somatic_tumour	X	19162573	RhoGAP18B	intron	X	19160794	RhoGAP18B	intron	DEL	1.8	0.27	precise	0	-
5	bp1	D050R10	somatic_tumour	3L	9102625	bol	3UTR	3L	9106160	bol	intron	DEL	3.5	0.47	imprecise	0	-
5	bp2	D050R10	somatic_tumour	3L	9106160	bol	intron	3L	9102625	bol	3UTR	DEL	3.5	0.47	imprecise	0	-
10	bp1	D050R10	somatic_tumour	X	11195850	intergenic	intergenic	X	11199385	intergenic	intergenic	DEL	3.5	0.47	imprecise	0	-
10	bp2	D050R10	somatic_tumour	X	11199385	intergenic	intergenic	X	11195850	intergenic	intergenic	DEL	3.5	0.47	imprecise	0	-
4	bp1	D050R12	somatic_tumour	3R	32031456	intergenic	intergenic	3R	32079331	intergenic	intergenic	DEL	47.9	0.44	imprecise	0	-
4	bp2	D050R12	somatic_tumour	3R	32079331	intergenic	intergenic	3R	32031456	intergenic	intergenic	DEL	47.9	0.44	imprecise	0	-
6	bp1	D050R12	somatic_tumour	X	6268144	Spt6	exon_2	X	6274032	Spt6	exon	DUP	5.9	0.46	imprecise	0	-
6	bp2	D050R12	somatic_tumour	X	6274032	Spt6	exon	X	6268144	Spt6	exon_2	DUP	5.9	0.46	imprecise	0	-
7	bp1	D050R12	somatic_tumour	X	11196032	intergenic	intergenic	X	11199344	intergenic	intergenic	DEL	3.3	0.48	imprecise	0	-
7	bp2	D050R12	somatic_tumour	X	11199344	intergenic	intergenic	X	11196032	intergenic	intergenic	DEL	3.3	0.48	imprecise	0	-
5	bp1	D050R14	somatic_tumour	3L	9102666	bol	3UTR	3L	9106596	bol	3UTR	DEL	3.9	0.48	imprecise	0	-
5	bp2	D050R14	somatic_tumour	3L	9106596	bol	3UTR	3L	9102666	bol	3UTR	DEL	3.9	0.48	imprecise	0	-
9	bp1	D050R14	somatic_tumour	4	328941	PMCA	3UTR	4	330120	PMCA	3UTR	DUP	1.2	0.47	imprecise	0	-
9	bp2	D050R14	somatic_tumour	4	330120	PMCA	3UTR	4	328941	PMCA	3UTR	DUP	1.2	0.47	imprecise	0	-
7	bp1	D050R16	somatic_tumour	2R	21820177	intergenic	intergenic	2R	21830291	CG13492	intron	DUP	10.1	0.37	imprecise	0	-
7	bp2	D050R16	somatic_tumour	2R	21830291	CG13492	intron	2R	21820177	intergenic	intergenic	DUP	10.1	0.37	imprecise	0	-
15	bp1	D050R16	somatic_tumour	X	9363230	mgl	exon_12	X	9373733	mgl	exon_7	DUP	10.5	0.41	imprecise	0	-
15	bp2	D050R16	somatic_tumour	X	9373733	mgl	exon_7	X	9363230	mgl	exon_12	DUP	10.5	0.41	imprecise	0	-
17	bp1	D050R16	somatic_tumour	X	20392158	l(1)G0004	exon	X	20410830	HERC2	exon_9	DUP	18.7	0.38	imprecise	0	-
17	bp2	D050R16	somatic_tumour	X	20410830	HERC2	exon_9	X	20392158	l(1)G0004	exon	DUP	18.7	0.38	imprecise	0	-
3	bp1	D050R18	somatic_tumour	2L	8538675	CG17834	intron	2L	8543670	Sema-1a	exon_1	DUP	5.0	0.35	imprecise	0	-
3	bp2	D050R18	somatic_tumour	2L	8543670	Sema-1a	exon_1	2L	8538675	CG17834	intron	DUP	5.0	0.35	imprecise	0	-
4	bp1	D050R18	somatic_tumour	2L	10278600	Utx	intron	2L	10281930	intergenic	intergenic	DUP	3.3	0.43	imprecise	0	-
4	bp2	D050R18	somatic_tumour	2L	10281930	intergenic	intergenic	2L	10278600	Utx	intron	DUP	3.3	0.43	imprecise	0	-
5	bp1	D050R18	somatic_tumour	2L	10291920	CG5604	intron	2L	10293585	Hand	intron	DUP	1.7	0.46	imprecise	0	-
5	bp2	D050R18	somatic_tumour	2L	10293585	Hand	intron	2L	10291920	CG5604	intron	DUP	1.7	0.46	imprecise	0	-
6	bp1	D050R18	somatic_tumour	2L	10995660	CG16833	3UTR	2L	10997880	aub	3UTR	DUP	2.2	0.48	imprecise	0	-
6	bp2	D050R18	somatic_tumour	2L	10997880	aub	3UTR	2L	10995660	CG16833	3UTR	DUP	2.2	0.48	imprecise	0	-
8	bp1	D050R18	somatic_tumour	2L	11516068	Dlg5	intron	2L	11516283	Dlg5	intron	BND	0.2	0.12	precise	0	NHEJ
8	bp2	D050R18	somatic_tumour	2L	11516283	Dlg5	intron	2L	11516068	Dlg5	intron	BND	0.2	0.12	precise	0	NHEJ
9	bp1	D050R18	somatic_tumour	2L	11793750	CG14937	exon	2L	11795970	crol	3UTR	DUP	2.2	0.43	imprecise	0	-
9	bp2	D050R18	somatic_tumour	2L	11795970	crol	3UTR	2L	11793750	CG14937	exon	DUP	2.2	0.43	imprecise	0	-
10	bp1	D050R18	somatic_tumour	2L	14517690	intergenic	intergenic	2L	14528790	intergenic	intergenic	DUP	11.1	0.4	imprecise	0	-
10	bp2	D050R18	somatic_tumour	2L	14528790	intergenic	intergenic	2L	14517690	intergenic	intergenic	DUP	11.1	0.4	imprecise	0	-
11	bp1	D050R18	somatic_tumour	2L	15032730	GABA-B-R1	3UTR	2L	15034950	intergenic	intergenic	DUP	2.2	0.43	imprecise	0	-
11	bp2	D050R18	somatic_tumour	2L	15034950	intergenic	intergenic	2L	15032730	GABA-B-R1	3UTR	DUP	2.2	0.43	imprecise	0	-
12	bp1	D050R18	somatic_tumour	2L	17457525	CG18563	exon	2L	17461410	BicD	exon_8	DUP	3.9	0.41	imprecise	0	-
12	bp2	D050R18	somatic_tumour	2L	17461410	BicD	exon_8	2L	17457525	CG18563	exon	DUP	3.9	0.41	imprecise	0	-
18	bp1	D050R18	somatic_tumour	3L	16197675	intergenic	intergenic	3L	16202115	intergenic	intergenic	DUP	4.4	0.44	imprecise	0	-
18	bp2	D050R18	somatic_tumour	3L	16202115	intergenic	intergenic	3L	16197675	intergenic	intergenic	DUP	4.4	0.44	imprecise	0	-
21	bp1	D050R18	somatic_tumour	3R	14618145	CG14853	3UTR	3R	14620920	put	3UTR	DUP	2.8	0.47	imprecise	0	-
21	bp2	D050R18	somatic_tumour	3R	14620920	put	3UTR	3R	14618145	CG14853	3UTR	DUP	2.8	0.47	imprecise	0	-
22	bp1	D050R18	somatic_tumour	3R	20367342	intergenic	intergenic	3R	20367486	intergenic	intergenic	BND	0.1	0.04	precise	0	NHEJ
22	bp2	D050R18	somatic_tumour	3R	20367486	intergenic	intergenic	3R	20367342	intergenic	intergenic	BND	0.1	0.04	precise	0	NHEJ
23	bp1	D050R18	somatic_tumour	4	235875	CG1674	intron	4	253635	intergenic	intergenic	DUP	17.8	0.39	imprecise	0	-
23	bp2	D050R18	somatic_tumour	4	253635	intergenic	intergenic	4	235875	CG1674	intron	DUP	17.8	0.39	imprecise	0	-
24	bp1	D050R18	somatic_tumour	4	570540	ND-49	intron	4	572205	Ephrin	intron	DUP	1.7	0.47	imprecise	0	-
24	bp2	D050R18	somatic_tumour	4	572205	Ephrin	intron	4	570540	ND-49	intron	DUP	1.7	0.47	imprecise	0	-
26	bp1	D050R18	somatic_tumour	4	810855	Sox102F	intron	4	812520	Sox102F	intron	DUP	1.7	0.47	imprecise	0	-
26	bp2	D050R18	somatic_tumour	4	812520	Sox102F	intron	4	810855	Sox102F	intron	DUP	1.7	0.47	imprecise	0	-
27	bp1	D050R18	somatic_tumour	4	812520	Sox102F	intron	4	831945	Sox102F	intron	DUP	19.4	0.37	imprecise	0	-
27	bp2	D050R18	somatic_tumour	4	831945	Sox102F	intron	4	812520	Sox102F	intron	DUP	19.4	0.37	imprecise	0	-
28	bp1	D050R18	somatic_tumour	4	892995	unc-13	intron	4	897435	unc-13	intron	DUP	4.4	0.44	imprecise	0	-
28	bp2	D050R18	somatic_tumour	4	897435	unc-13	intron	4	892995	unc-13	intron	DUP	4.4	0.44	imprecise	0	-
31	bp1	D050R18	somatic_tumour	X	13071915	rad	intron	X	13074690	rad	intron	DUP	2.8	0.44	imprecise	0	-
31	bp2	D050R18	somatic_tumour	X	13074690	rad	intron	X	13071915	rad	intron	DUP	2.8	0.44	imprecise	0	-
1	bp1	D050R20	somatic_tumour	2L	15334268	esg	exon	2L	15343758	intergenic	intergenic	BND	9.5	0.07	precise	CT	Alt-EJ
1	bp2	D050R20	somatic_tumour	2L	15343758	intergenic	intergenic	2L	15334268	esg	exon	BND	9.5	0.07	precise	CT	Alt-EJ
5	bp1	D050R20	somatic_tumour	3L	12212180	app	exon	3L	12212290	app	exon	BND	0.1	0.04	precise	CGGCGCCAGCGGC	Alt-EJ
5	bp2	D050R20	somatic_tumour	3L	12212290	app	exon	3L	12212180	app	exon	BND	0.1	0.04	precise	CGGCGCCAGCGGC	Alt-EJ
6	bp1	D050R20	somatic_tumour	3L	21411443	rgn	intron	3L	21412383	rgn	intron	DEL	0.9	0.12	precise	0	NHEJ
6	bp2	D050R20	somatic_tumour	3L	21412383	rgn	intron	3L	21411443	rgn	intron	DEL	0.9	0.12	precise	0	NHEJ
7	bp1	D050R20	somatic_tumour	3R	5147556	intergenic	intergenic	3R	5151408	dpr16	intron	DUP	3.9	0.43	imprecise	0	-
7	bp2	D050R20	somatic_tumour	3R	5151408	dpr16	intron	3R	5147556	intergenic	intergenic	DUP	3.9	0.43	imprecise	0	-
13	bp1	D050R20	somatic_tumour	4	798220	intergenic	intergenic	4	799504	intergenic	intergenic	DUP	1.3	0.39	imprecise	0	-
13	bp2	D050R20	somatic_tumour	4	799504	intergenic	intergenic	4	798220	intergenic	intergenic	DUP	1.3	0.39	imprecise	0	-
15	bp1	D050R20	somatic_tumour	X	10435068	CG32683	intron	X	10436352	CG32683	intron	DUP	1.3	0.44	imprecise	0	-
15	bp2	D050R20	somatic_tumour	X	10436352	CG32683	intron	X	10435068	CG32683	intron	DUP	1.3	0.44	imprecise	0	-
17	bp1	D050R20	somatic_tumour	X	10822149	Imp	intron	3R	22494715	intergenic	intergenic	TRA	11672.6	0.07	precise	C	Alt-EJ
17	bp2	D050R20	somatic_tumour	3R	22494715	intergenic	intergenic	X	10822149	Imp	intron	TRA	11672.6	0.07	precise	C	Alt-EJ
21	bp1	D050R20	somatic_tumour	X	21557932	intergenic	intergenic	X	21571200	intergenic	intergenic	DEL	13.3	0.32	imprecise	0	-
21	bp2	D050R20	somatic_tumour	X	21571200	intergenic	intergenic	X	21557932	intergenic	intergenic	DEL	13.3	0.32	imprecise	0	-
1	bp1	D050R22	somatic_tumour	2L	140255	CG31975	exon_1	2L	144791	CG42399	exon	DEL	4.5	0.01	precise	0	NHEJ
1	bp2	D050R22	somatic_tumour	2L	144791	CG42399	exon	2L	140255	CG31975	exon_1	DEL	4.5	0.01	precise	0	NHEJ
2	bp1	D050R22	somatic_tumour	2L	3788744	bark	intron	2L	3790516	bark	intron	DEL	1.8	0.12	precise	0	NHEJ
2	bp2	D050R22	somatic_tumour	2L	3790516	bark	intron	2L	3788744	bark	intron	DEL	1.8	0.12	precise	0	NHEJ
3	bp1	D050R22	somatic_tumour	2R	3897936	intergenic	intergenic	2R	3943296	uex	exon_3	DUP	45.4	0.26	imprecise	0	-
3	bp2	D050R22	somatic_tumour	2R	3943296	uex	exon_3	2R	3897936	intergenic	intergenic	DUP	45.4	0.26	imprecise	0	-
4	bp1	D050R22	somatic_tumour	2R	10492776	lola	intron	2R	10499832	lola	intron	DUP	7.1	0.38	imprecise	0	-
4	bp2	D050R22	somatic_tumour	2R	10499832	lola	intron	2R	10492776	lola	intron	DUP	7.1	0.38	imprecise	0	-
10	bp1	D050R22	somatic_tumour	4	71568	pan	intron	4	75600	pan	intron	DUP	4.0	0.4	imprecise	0	-
10	bp2	D050R22	somatic_tumour	4	75600	pan	intron	4	71568	pan	intron	DUP	4.0	0.4	imprecise	0	-
11	bp1	D050R22	somatic_tumour	4	553392	Thd1	exon_2	4	577584	Ephrin	3UTR	DUP	24.2	0.31	imprecise	0	-
11	bp2	D050R22	somatic_tumour	4	577584	Ephrin	3UTR	4	553392	Thd1	exon_2	DUP	24.2	0.31	imprecise	0	-
12	bp1	D050R22	somatic_tumour	4	983808	intergenic	intergenic	4	988848	intergenic	intergenic	DUP	5.0	0.34	imprecise	0	-
12	bp2	D050R22	somatic_tumour	4	988848	intergenic	intergenic	4	983808	intergenic	intergenic	DUP	5.0	0.34	imprecise	0	-
13	bp1	D050R22	somatic_tumour	4	1051848	CaMKII	intron	4	1054368	intergenic	intergenic	DUP	2.5	0.4	imprecise	0	-
13	bp2	D050R22	somatic_tumour	4	1054368	intergenic	intergenic	4	1051848	CaMKII	intron	DUP	2.5	0.4	imprecise	0	-
15	bp1	D050R22	somatic_tumour	X	3335976	CR44886	ncRNA	X	3354624	intergenic	intergenic	DUP	18.6	0.39	imprecise	0	-
15	bp2	D050R22	somatic_tumour	X	3354624	intergenic	intergenic	X	3335976	CR44886	ncRNA	DUP	18.6	0.39	imprecise	0	-
17	bp1	D050R22	somatic_tumour	X	15470322	Grip128	exon_4	X	15495936	Gmap	intron	BND	25.6	0.1	precise	0	FoSTeS
17	bp2	D050R22	somatic_tumour	X	15495936	Gmap	intron	X	15470322	Grip128	exon_4	BND	25.6	0.1	precise	0	FoSTeS
17	bp1	D050R24	somatic_tumour	3L	0	intergenic	intergenic	3L	106488	intergenic	intergenic	DEL	106.5	0.37	imprecise	0	-
17	bp2	D050R24	somatic_tumour	3L	106488	intergenic	intergenic	3L	0	intergenic	intergenic	DEL	106.5	0.37	imprecise	0	-
31	bp1	D050R24	somatic_tumour	3R	11371248	pros	intron	3R	11376990	pros	exon_5	DUP	5.7	0.47	imprecise	0	-
31	bp2	D050R24	somatic_tumour	3R	11376990	pros	exon_5	3R	11371248	pros	intron	DUP	5.7	0.47	imprecise	0	-
34	bp1	D050R24	somatic_tumour	3R	24318414	Nab2	5UTR	3R	24329376	CG5728	exon_3	DUP	11.0	0.42	imprecise	0	-
34	bp2	D050R24	somatic_tumour	3R	24329376	CG5728	exon_3	3R	24318414	Nab2	5UTR	DUP	11.0	0.42	imprecise	0	-
40	bp1	D050R24	somatic_tumour	4	266220	intergenic	intergenic	4	292320	Syt7	intron	DEL	26.1	0.35	imprecise	0	-
40	bp2	D050R24	somatic_tumour	4	292320	Syt7	intron	4	266220	intergenic	intergenic	DEL	26.1	0.35	imprecise	0	-
41	bp1	D050R24	somatic_tumour	4	728190	bt	exon_5	4	729756	bt	intron	DEL	1.6	0.41	imprecise	0	-
41	bp2	D050R24	somatic_tumour	4	729756	bt	intron	4	728190	bt	exon_5	DEL	1.6	0.41	imprecise	0	-
42	bp1	D050R24	somatic_tumour	4	898362	unc-13	intron	4	903582	unc-13	intron	DEL	5.2	0.34	imprecise	0	-
42	bp2	D050R24	somatic_tumour	4	903582	unc-13	intron	4	898362	unc-13	intron	DEL	5.2	0.34	imprecise	0	-
44	bp1	D050R24	somatic_tumour	X	2724840	fs(1)Ya	exon	X	2737890	crm	intron	DUP	13.1	0.43	imprecise	0	-
44	bp2	D050R24	somatic_tumour	X	2737890	crm	intron	X	2724840	fs(1)Ya	exon	DUP	13.1	0.43	imprecise	0	-
45	bp1	D050R24	somatic_tumour	X	4619700	peb	intron	X	4660416	CG3009	exon_2	DUP	40.7	0.41	imprecise	0	-
45	bp2	D050R24	somatic_tumour	X	4660416	CG3009	exon_2	X	4619700	peb	intron	DUP	40.7	0.41	imprecise	0	-
48	bp1	D050R24	somatic_tumour	X	5312916	dhd	3UTR	X	5329098	CG3309	exon_1	DUP	16.2	0.43	imprecise	0	-
48	bp2	D050R24	somatic_tumour	X	5329098	CG3309	exon_1	X	5312916	dhd	3UTR	DUP	16.2	0.43	imprecise	0	-
49	bp1	D050R24	somatic_tumour	X	6083388	Mipp2	3UTR	X	6114708	Ca-alpha1T	exon_19	DUP	31.3	0.41	imprecise	0	-
49	bp2	D050R24	somatic_tumour	X	6114708	Ca-alpha1T	exon_19	X	6083388	Mipp2	3UTR	DUP	31.3	0.41	imprecise	0	-
50	bp1	D050R24	somatic_tumour	X	8125452	cyr	intron	X	8168256	CG2278	exon	DUP	42.8	0.41	imprecise	0	-
50	bp2	D050R24	somatic_tumour	X	8168256	CG2278	exon	X	8125452	cyr	intron	DUP	42.8	0.41	imprecise	0	-
51	bp1	D050R24	somatic_tumour	X	10465578	nocte	intron	X	10470798	nocte	exon_4	DUP	5.2	0.47	imprecise	0	-
51	bp2	D050R24	somatic_tumour	X	10470798	nocte	exon_4	X	10465578	nocte	intron	DUP	5.2	0.47	imprecise	0	-
52	bp1	D050R24	somatic_tumour	X	11110248	Hsp60A	exon_2	X	11128518	Gtp-bp	exon_2	DUP	18.3	0.46	imprecise	0	-
52	bp2	D050R24	somatic_tumour	X	11128518	Gtp-bp	exon_2	X	11110248	Hsp60A	exon_2	DUP	18.3	0.46	imprecise	0	-
54	bp1	D050R24	somatic_tumour	X	15453288	intergenic	intergenic	X	15474690	mh	exon_3	DUP	21.4	0.4	imprecise	0	-
54	bp2	D050R24	somatic_tumour	X	15474690	mh	exon_3	X	15453288	intergenic	intergenic	DUP	21.4	0.4	imprecise	0	-
56	bp1	D050R24	somatic_tumour	X	17661870	beta-Spec	exon_2	X	17667090	beta-Spec	exon_2	DUP	5.2	0.49	imprecise	0	-
56	bp2	D050R24	somatic_tumour	X	17667090	beta-Spec	exon_2	X	17661870	beta-Spec	exon_2	DUP	5.2	0.49	imprecise	0	-
59	bp1	D050R24	somatic_tumour	X	19855314	Nup205	exon_6	X	19864188	CG15618	exon_4	DUP	8.9	0.49	imprecise	0	-
59	bp2	D050R24	somatic_tumour	X	19864188	CG15618	exon_4	X	19855314	Nup205	exon_6	DUP	8.9	0.49	imprecise	0	-
60	bp1	D050R24	somatic_tumour	X	20392452	Syx16	exon	X	20442564	CG1695	exon_5	DUP	50.1	0.41	imprecise	0	-
60	bp2	D050R24	somatic_tumour	X	20442564	CG1695	exon_5	X	20392452	Syx16	exon	DUP	50.1	0.41	imprecise	0	-
12	bp1	D106R11	somatic_tumour	2L	5118828	Msp300	intron	2L	5150856	Msp300	intron	DUP	32.0	0.17	imprecise	0	-
12	bp2	D106R11	somatic_tumour	2L	5150856	Msp300	intron	2L	5118828	Msp300	intron	DUP	32.0	0.17	imprecise	0	-
13	bp1	D106R11	somatic_tumour	2L	5230062	tkv	intron	3R	21956534	Eip93F	intron	TRA	16726.5	0.03	precise	TTTTTTTTT	Alt-EJ
13	bp2	D106R11	somatic_tumour	3R	21956534	Eip93F	intron	2L	5230062	tkv	intron	TRA	16726.5	0.03	precise	TTTTTTTTT	Alt-EJ
25	bp1	D106R11	somatic_tumour	2L	11850988	Mal-B2	exon_2	2L	11857268	Pde1c	intron	DEL	6.3	0.3	imprecise	0	-
25	bp2	D106R11	somatic_tumour	2L	11857268	Pde1c	intron	2L	11850988	Mal-B2	exon_2	DEL	6.3	0.3	imprecise	0	-
31	bp1	D106R11	somatic_tumour	2L	15863763	intergenic	intergenic	X	1326498	fs(1)N	exon_5	TRA	14537.3	0.04	precise	GCTGCAGGTC	Alt-EJ
31	bp2	D106R11	somatic_tumour	X	1326498	fs(1)N	exon_5	2L	15863763	intergenic	intergenic	TRA	14537.3	0.04	precise	GCTGCAGGTC	Alt-EJ
35	bp1	D106R11	somatic_tumour	2L	18708428	Faf2	5UTR	3R	24261982	jar	intron	TRA	5553.6	0.03	precise	0	NHEJ
35	bp2	D106R11	somatic_tumour	3R	24261982	jar	intron	2L	18708428	Faf2	5UTR	TRA	5553.6	0.03	precise	0	NHEJ
60	bp1	D106R11	somatic_tumour	2R	20068550	intergenic	intergenic	2L	15733420	CycE	intron	TRA	4335.1	0.1	precise	GGACAC	Alt-EJ
60	bp2	D106R11	somatic_tumour	2L	15733420	CycE	intron	2R	20068550	intergenic	intergenic	TRA	4335.1	0.1	precise	GGACAC	Alt-EJ
111	bp1	D106R11	somatic_tumour	3R	20897730	intergenic	intergenic	2R	14485369	PRAS40	intron	TRA	6412.4	0.08	precise	TCAG	Alt-EJ
111	bp2	D106R11	somatic_tumour	2R	14485369	PRAS40	intron	3R	20897730	intergenic	intergenic	TRA	6412.4	0.08	precise	TCAG	Alt-EJ
125	bp1	D106R11	somatic_tumour	4	357332	PMCA	intron	4	360472	Hcf	intron	DEL	3.1	0.3	imprecise	0	-
125	bp2	D106R11	somatic_tumour	4	360472	Hcf	intron	4	357332	PMCA	intron	DEL	3.1	0.3	imprecise	0	-
127	bp1	D106R11	somatic_tumour	4	578388	Ephrin	3UTR	4	580272	intergenic	intergenic	DEL	1.9	0.31	imprecise	0	-
127	bp2	D106R11	somatic_tumour	4	580272	intergenic	intergenic	4	578388	Ephrin	3UTR	DEL	1.9	0.31	imprecise	0	-
128	bp1	D106R11	somatic_tumour	4	1144216	CG32017	intron	4	1148612	Kif3C	intron	DEL	4.4	0.29	imprecise	0	-
128	bp2	D106R11	somatic_tumour	4	1148612	Kif3C	intron	4	1144216	CG32017	intron	DEL	4.4	0.29	imprecise	0	-
137	bp1	D106R11	somatic_tumour	X	3770729	Tlk	intron	X	3773147	Tlk	intron	DEL	2.4	0.06	precise	0	NHEJ
137	bp2	D106R11	somatic_tumour	X	3773147	Tlk	intron	X	3770729	Tlk	intron	DEL	2.4	0.06	precise	0	NHEJ
140	bp1	D106R11	somatic_tumour	X	9564384	Cubn	exon_11	X	21258536	CG32521	intron	BND	11694.2	0.03	precise	0	NHEJ
140	bp2	D106R11	somatic_tumour	X	21258536	CG32521	intron	X	9564384	Cubn	exon_11	BND	11694.2	0.03	precise	0	NHEJ
149	bp1	D106R11	somatic_tumour	X	13784021	inaE	exon_1	3R	30001930	Tace	exon_5	TRA	16217.9	0.06	precise	0	NHEJ
149	bp2	D106R11	somatic_tumour	3R	30001930	Tace	exon_5	X	13784021	inaE	exon_1	TRA	16217.9	0.06	precise	0	NHEJ
2	bp1	D106R13	somatic_tumour	2L	0	intergenic	intergenic	2L	139486	CG31975	exon	DUP	139.5	0.17	imprecise	0	-
2	bp2	D106R13	somatic_tumour	2L	139486	CG31975	exon	2L	0	intergenic	intergenic	DUP	139.5	0.17	imprecise	0	-
4	bp1	D106R13	somatic_tumour	2L	4191770	CG3714	intron	2L	4572121	dpy	intron	DUP	380.4	0.08	imprecise	0	-
4	bp2	D106R13	somatic_tumour	2L	4572121	dpy	intron	2L	4191770	CG3714	intron	DUP	380.4	0.08	imprecise	0	-
8	bp1	D106R13	somatic_tumour	2L	9526676	Oatp30B	intron	2L	9528115	Oatp30B	intron	DEL	1.4	0.22	precise	0	NHEJ
8	bp2	D106R13	somatic_tumour	2L	9528115	Oatp30B	intron	2L	9526676	Oatp30B	intron	DEL	1.4	0.22	precise	0	NHEJ
9	bp1	D106R13	somatic_tumour	2L	10197577	Sur	intron	2L	10515375	Fatp	intron	DUP	317.8	0.09	imprecise	0	-
9	bp2	D106R13	somatic_tumour	2L	10515375	Fatp	intron	2L	10197577	Sur	intron	DUP	317.8	0.09	imprecise	0	-
11	bp1	D106R13	somatic_tumour	2L	17524906	Dhc36C	intron	2L	17882968	intergenic	intergenic	DEL	358.1	0.19	imprecise	0	-
11	bp2	D106R13	somatic_tumour	2L	17882968	intergenic	intergenic	2L	17524906	Dhc36C	intron	DEL	358.1	0.19	imprecise	0	-
23	bp1	D106R13	somatic_tumour	3R	17310383	intergenic	intergenic	3R	20277308	cic	intron	TANDUP	2966.9	0.11	precise	0	-
23	bp2	D106R13	somatic_tumour	3R	20277308	cic	intron	3R	17310383	intergenic	intergenic	TANDUP	2966.9	0.11	precise	0	-
27	bp1	D106R13	somatic_tumour	3R	21317631	Hsromega	exon_1	3R	21320507	CG16791	3UTR	DUP	2.9	0.38	imprecise	0	-
27	bp2	D106R13	somatic_tumour	3R	21320507	CG16791	3UTR	3R	21317631	Hsromega	exon_1	DUP	2.9	0.38	imprecise	0	-
37	bp1	D106R13	somatic_tumour	4	357343	PMCA	intron	4	359500	intergenic	intergenic	DUP	2.2	0.43	imprecise	0	-
37	bp2	D106R13	somatic_tumour	4	359500	intergenic	intergenic	4	357343	PMCA	intron	DUP	2.2	0.43	imprecise	0	-
45	bp1	D106R13	somatic_tumour	X	11933962	cac	exon_33	X	11964879	cac	intron	DUP	30.9	0.26	imprecise	0	-
45	bp2	D106R13	somatic_tumour	X	11964879	cac	intron	X	11933962	cac	exon_33	DUP	30.9	0.26	imprecise	0	-
1	bp1	D106R15	somatic_tumour	2L	166370	spen	intron	2L	185365	spen	exon_4	DEL	19.0	0.18	imprecise	0	-
1	bp2	D106R15	somatic_tumour	2L	185365	spen	exon_4	2L	166370	spen	intron	DEL	19.0	0.18	imprecise	0	-
2	bp1	D106R15	somatic_tumour	2L	4484785	dpy	exon_43	2L	4581070	dpy	intron	DUP	96.3	0.21	imprecise	0	-
2	bp2	D106R15	somatic_tumour	2L	4581070	dpy	intron	2L	4484785	dpy	exon_43	DUP	96.3	0.21	imprecise	0	-
3	bp1	D106R15	somatic_tumour	2L	6974440	uif	exon_11	2L	6987540	uif	intron	DUP	13.1	0.22	imprecise	0	-
3	bp2	D106R15	somatic_tumour	2L	6987540	uif	intron	2L	6974440	uif	exon_11	DUP	13.1	0.22	imprecise	0	-
4	bp1	D106R15	somatic_tumour	2L	8531375	CG17834	intron	2L	8556265	Sema-1a	intron	DEL	24.9	0.2	imprecise	0	-
4	bp2	D106R15	somatic_tumour	2L	8556265	Sema-1a	intron	2L	8531375	CG17834	intron	DEL	24.9	0.2	imprecise	0	-
5	bp1	D106R15	somatic_tumour	2L	8978085	CG13101	exon	2L	8980050	CG13101	exon_3	DUP	2.0	0.47	imprecise	0	-
5	bp2	D106R15	somatic_tumour	2L	8980050	CG13101	exon_3	2L	8978085	CG13101	exon	DUP	2.0	0.47	imprecise	0	-
7	bp1	D106R15	somatic_tumour	2L	11850915	Mal-B2	exon_2	2L	11856810	Pde1c	intron	DEL	5.9	0.37	imprecise	0	-
7	bp2	D106R15	somatic_tumour	2L	11856810	Pde1c	intron	2L	11850915	Mal-B2	exon_2	DEL	5.9	0.37	imprecise	0	-
8	bp1	D106R15	somatic_tumour	2L	12912670	ACXC	exon_1	2L	12942145	intergenic	intergenic	DUP	29.5	0.25	imprecise	0	-
8	bp2	D106R15	somatic_tumour	2L	12942145	intergenic	intergenic	2L	12912670	ACXC	exon_1	DUP	29.5	0.25	imprecise	0	-
15	bp1	D106R15	somatic_tumour	3L	21333350	CR46068	exon_1	3L	21341210	CG7324	exon_6	DUP	7.9	0.33	imprecise	0	-
15	bp2	D106R15	somatic_tumour	3L	21341210	CG7324	exon_6	3L	21333350	CR46068	exon_1	DUP	7.9	0.33	imprecise	0	-
16	bp1	D106R15	somatic_tumour	3R	4173005	intergenic	intergenic	3R	4184795	CG12581	3UTR	DUP	11.8	0.33	imprecise	0	-
16	bp2	D106R15	somatic_tumour	3R	4184795	CG12581	3UTR	3R	4173005	intergenic	intergenic	DUP	11.8	0.33	imprecise	0	-
25	bp1	D106R15	somatic_tumour	3R	24234345	mask	intron	3R	24243515	mask	exon_15	DUP	9.2	0.31	imprecise	0	-
25	bp2	D106R15	somatic_tumour	3R	24243515	mask	exon_15	3R	24234345	mask	intron	DUP	9.2	0.31	imprecise	0	-
27	bp1	D106R15	somatic_tumour	4	94320	pan	intron	4	107420	pan	exon_13	DEL	13.1	0.25	imprecise	0	-
27	bp2	D106R15	somatic_tumour	4	107420	pan	exon_13	4	94320	pan	intron	DEL	13.1	0.25	imprecise	0	-
39	bp1	D106R15	somatic_tumour	X	19569630	intergenic	intergenic	X	19570265	Tao	3UTR	DEL	0.6	0.26	precise	0	NHEJ
39	bp2	D106R15	somatic_tumour	X	19570265	Tao	3UTR	X	19569630	intergenic	intergenic	DEL	0.6	0.26	precise	0	NHEJ
9	bp1	D106R17	somatic_tumour	2L	11851728	Mal-B2	exon_3	2L	11856432	Pde1c	intron	DEL	4.7	0.47	imprecise	0	-
9	bp2	D106R17	somatic_tumour	2L	11856432	Pde1c	intron	2L	11851728	Mal-B2	exon_3	DEL	4.7	0.47	imprecise	0	-
11	bp1	D106R17	somatic_tumour	2L	16595712	CG42389	intron	2L	16598848	CG42389	intron	DUP	3.1	0.42	imprecise	0	-
11	bp2	D106R17	somatic_tumour	2L	16598848	CG42389	intron	2L	16595712	CG42389	intron	DUP	3.1	0.42	imprecise	0	-
17	bp1	D106R17	somatic_tumour	2R	9551429	intergenic	intergenic	2R	9551538	intergenic	intergenic	DEL	0.1	0.7	precise	TATT	Alt-EJ
17	bp2	D106R17	somatic_tumour	2R	9551538	intergenic	intergenic	2R	9551429	intergenic	intergenic	DEL	0.1	0.7	precise	TATT	Alt-EJ
25	bp1	D106R17	somatic_tumour	2R	18795929	MFS15	exon_3	3R	21957221	Eip93F	intron	TRA	3161.3	0.05	precise	0	NHEJ
25	bp2	D106R17	somatic_tumour	3R	21957221	Eip93F	intron	2R	18795929	MFS15	exon_3	TRA	3161.3	0.05	precise	0	NHEJ
36	bp1	D106R17	somatic_tumour	3L	4552985	CG11357	3UTR	3L	4577242	CG42540	intron	TANDUP	24.3	0.14	precise	0	NHEJ
36	bp2	D106R17	somatic_tumour	3L	4577242	CG42540	intron	3L	4552985	CG11357	3UTR	TANDUP	24.3	0.14	precise	0	NHEJ
39	bp1	D106R17	somatic_tumour	3L	7082656	intergenic	intergenic	3L	7095984	form3	intron	DUP	13.3	0.33	imprecise	0	-
39	bp2	D106R17	somatic_tumour	3L	7095984	form3	intron	3L	7082656	intergenic	intergenic	DUP	13.3	0.33	imprecise	0	-
42	bp1	D106R17	somatic_tumour	3L	9499706	path	intron	3L	9502865	path	intron	DEL	3.2	0.2	precise	TA	Alt-EJ
42	bp2	D106R17	somatic_tumour	3L	9502865	path	intron	3L	9499706	path	intron	DEL	3.2	0.2	precise	TA	Alt-EJ
50	bp1	D106R17	somatic_tumour	3R	3076416	Pzl	intron	3R	3078768	Pzl	intron	DUP	2.4	0.45	imprecise	0	-
50	bp2	D106R17	somatic_tumour	3R	3078768	Pzl	intron	3R	3076416	Pzl	intron	DUP	2.4	0.45	imprecise	0	-
51	bp1	D106R17	somatic_tumour	3R	4172448	intergenic	intergenic	3R	4177936	CG12581	intron	DUP	5.5	0.47	imprecise	0	-
51	bp2	D106R17	somatic_tumour	3R	4177936	CG12581	intron	3R	4172448	intergenic	intergenic	DUP	5.5	0.47	imprecise	0	-
72	bp1	D106R17	somatic_tumour	3R	29498784	CG2010	3UTR	3R	29502704	Trc8	intron	DUP	3.9	0.36	imprecise	0	-
72	bp2	D106R17	somatic_tumour	3R	29502704	Trc8	intron	3R	29498784	CG2010	3UTR	DUP	3.9	0.36	imprecise	0	-
75	bp1	D106R17	somatic_tumour	4	784	intergenic	intergenic	4	4704	JYalpha	exon_5	DUP	3.9	0.36	imprecise	0	-
75	bp2	D106R17	somatic_tumour	4	4704	JYalpha	exon_5	4	784	intergenic	intergenic	DUP	3.9	0.36	imprecise	0	-
76	bp1	D106R17	somatic_tumour	4	62720	CR43957	ncRNA	4	98000	pan	intron	DUP	35.3	0.25	imprecise	0	-
76	bp2	D106R17	somatic_tumour	4	98000	pan	intron	4	62720	CR43957	ncRNA	DUP	35.3	0.25	imprecise	0	-
77	bp1	D106R17	somatic_tumour	4	214032	intergenic	intergenic	4	221088	CG31999	intron	DUP	7.1	0.31	imprecise	0	-
77	bp2	D106R17	somatic_tumour	4	221088	CG31999	intron	4	214032	intergenic	intergenic	DUP	7.1	0.31	imprecise	0	-
78	bp1	D106R17	somatic_tumour	4	495488	intergenic	intergenic	4	497840	intergenic	intergenic	DUP	2.4	0.38	imprecise	0	-
78	bp2	D106R17	somatic_tumour	4	497840	intergenic	intergenic	4	495488	intergenic	intergenic	DUP	2.4	0.38	imprecise	0	-
88	bp1	D106R17	somatic_tumour	X	7423696	intergenic	intergenic	X	7426048	intergenic	intergenic	DUP	2.4	0.43	imprecise	0	-
88	bp2	D106R17	somatic_tumour	X	7426048	intergenic	intergenic	X	7423696	intergenic	intergenic	DUP	2.4	0.43	imprecise	0	-
89	bp1	D106R17	somatic_tumour	X	7574224	intergenic	intergenic	X	7582848	intergenic	intergenic	DUP	8.6	0.31	imprecise	0	-
89	bp2	D106R17	somatic_tumour	X	7582848	intergenic	intergenic	X	7574224	intergenic	intergenic	DUP	8.6	0.31	imprecise	0	-
92	bp1	D106R17	somatic_tumour	X	9041088	Nost	intron	X	9045008	Nost	intron	DUP	3.9	0.44	imprecise	0	-
92	bp2	D106R17	somatic_tumour	X	9045008	Nost	intron	X	9041088	Nost	intron	DUP	3.9	0.44	imprecise	0	-
111	bp1	D106R17	somatic_tumour	X	22638784	intergenic	intergenic	X	22643488	intergenic	intergenic	DUP	4.7	0.37	imprecise	0	-
111	bp2	D106R17	somatic_tumour	X	22643488	intergenic	intergenic	X	22638784	intergenic	intergenic	DUP	4.7	0.37	imprecise	0	-
2	bp1	D106R19	somatic_tumour	2L	1056682	S	intron	2L	2942451	lilli	intron	BND	1885.8	0.07	precise	0	NHEJ
2	bp2	D106R19	somatic_tumour	2L	2942451	lilli	intron	2L	1056682	S	intron	BND	1885.8	0.07	precise	0	NHEJ
4	bp1	D106R19	somatic_tumour	2L	7017540	ade3	intron	2L	7025093	CG31908	3UTR	DEL	7.6	0.05	precise	C	Alt-EJ
4	bp2	D106R19	somatic_tumour	2L	7025093	CG31908	3UTR	2L	7017540	ade3	intron	DEL	7.6	0.05	precise	C	Alt-EJ
5	bp1	D106R19	somatic_tumour	2L	11925026	Pde1c	intron	2L	14218708	Dyrk2	intron	BND	2293.7	0.06	precise	TTGTGG	Alt-EJ
5	bp2	D106R19	somatic_tumour	2L	14218708	Dyrk2	intron	2L	11925026	Pde1c	intron	BND	2293.7	0.06	precise	TTGTGG	Alt-EJ
7	bp1	D106R19	somatic_tumour	2R	1919579	CG17684	intron	2R	1920108	CG17684	intron	TANDUP	0.5	0.12	precise	T	Alt-EJ
7	bp2	D106R19	somatic_tumour	2R	1920108	CG17684	intron	2R	1919579	CG17684	intron	TANDUP	0.5	0.12	precise	T	Alt-EJ
9	bp1	D106R19	somatic_tumour	2R	11179140	shn	intron	2R	11179338	shn	intron	BND	0.2	0.24	precise	AGTTCCTCATTAAGTA	Alt-EJ
9	bp2	D106R19	somatic_tumour	2R	11179338	shn	intron	2R	11179140	shn	intron	BND	0.2	0.24	precise	AGTTCCTCATTAAGTA	Alt-EJ
10	bp1	D106R19	somatic_tumour	2R	15560674	CG12963	5UTR	2R	23484819	CG43795	intron	DEL	7924.1	0.1	precise	0	NHEJ
10	bp2	D106R19	somatic_tumour	2R	23484819	CG43795	intron	2R	15560674	CG12963	5UTR	DEL	7924.1	0.1	precise	0	NHEJ
15	bp1	D106R19	somatic_tumour	3L	4629662	axo	3UTR	3L	4629779	axo	3UTR	DEL	0.1	0.37	precise	0	NHEJ
15	bp2	D106R19	somatic_tumour	3L	4629779	axo	3UTR	3L	4629662	axo	3UTR	DEL	0.1	0.37	precise	0	NHEJ
17	bp1	D106R19	somatic_tumour	3L	6592718	CG18769	3UTR	3L	6593027	CG18769	3UTR	DEL	0.3	0.23	precise	0	NHEJ
17	bp2	D106R19	somatic_tumour	3L	6593027	CG18769	3UTR	3L	6592718	CG18769	3UTR	DEL	0.3	0.23	precise	0	NHEJ
24	bp1	D106R19	somatic_tumour	3L	23476221	intergenic	intergenic	3L	25458394	CG45782	intron	BND	1982.2	0.22	precise	0	FoSTeS
24	bp2	D106R19	somatic_tumour	3L	25458394	CG45782	intron	3L	23476221	intergenic	intergenic	BND	1982.2	0.22	precise	0	FoSTeS
34	bp1	D106R19	somatic_tumour	X	16289160	caz	intron	X	16289225	caz	intron	DEL	0.1	0.12	precise	0	NHEJ
34	bp2	D106R19	somatic_tumour	X	16289225	caz	intron	X	16289160	caz	intron	DEL	0.1	0.12	precise	0	NHEJ
3	bp1	D106R1	somatic_tumour	2L	1075651	S	intron	3R	30198906	CG9743	intron	TRA	29123.3	0.07	precise	GACGGCA	Alt-EJ
3	bp2	D106R1	somatic_tumour	3R	30198906	CG9743	intron	2L	1075651	S	intron	TRA	29123.3	0.07	precise	GACGGCA	Alt-EJ
4	bp1	D106R1	somatic_tumour	2L	1102719	intergenic	intergenic	3R	17589417	intergenic	intergenic	TRA	16486.7	0.09	precise	0	NHEJ
4	bp2	D106R1	somatic_tumour	3R	17589417	intergenic	intergenic	2L	1102719	intergenic	intergenic	TRA	16486.7	0.09	precise	0	NHEJ
11	bp1	D106R1	somatic_tumour	2L	4052951	ed	intron	2R	15686210	Ranbp11	intron	TRA	11633.3	0.09	precise	0	NHEJ
11	bp2	D106R1	somatic_tumour	2R	15686210	Ranbp11	intron	2L	4052951	ed	intron	TRA	11633.3	0.09	precise	0	NHEJ
20	bp1	D106R1	somatic_tumour	2L	7217971	CG13784	intron	2R	22650610	nsr	5UTR	TRA	15432.6	0.13	precise	CCGAATA	Alt-EJ
20	bp2	D106R1	somatic_tumour	2R	22650610	nsr	5UTR	2L	7217971	CG13784	intron	TRA	15432.6	0.13	precise	CCGAATA	Alt-EJ
28	bp1	D106R1	somatic_tumour	2L	8762323	intergenic	intergenic	2L	8784493	intergenic	intergenic	DUP	22.2	0.29	imprecise	0	-
28	bp2	D106R1	somatic_tumour	2L	8784493	intergenic	intergenic	2L	8762323	intergenic	intergenic	DUP	22.2	0.29	imprecise	0	-
39	bp1	D106R1	somatic_tumour	2L	11866123	Pde1c	intron	2L	11880164	Pde1c	intron	DUP	14.0	0.3	imprecise	0	-
39	bp2	D106R1	somatic_tumour	2L	11880164	Pde1c	intron	2L	11866123	Pde1c	intron	DUP	14.0	0.3	imprecise	0	-
49	bp1	D106R1	somatic_tumour	2L	14824598	intergenic	intergenic	3R	6580568	dpr11	intron	TRA	8244.0	0.09	precise	0	NHEJ
49	bp2	D106R1	somatic_tumour	3R	6580568	dpr11	intron	2L	14824598	intergenic	intergenic	TRA	8244.0	0.09	precise	0	NHEJ
75	bp1	D106R1	somatic_tumour	2R	7531149	Drat	intron	2R	7537800	CG2137	exon	DUP	6.7	0.39	imprecise	0	-
75	bp2	D106R1	somatic_tumour	2R	7537800	CG2137	exon	2R	7531149	Drat	intron	DUP	6.7	0.39	imprecise	0	-
102	bp1	D106R1	somatic_tumour	2R	15578842	intergenic	intergenic	3R	27432774	side	intron	TRA	11853.9	0.09	precise	AGGA	Alt-EJ
102	bp2	D106R1	somatic_tumour	3R	27432774	side	intron	2R	15578842	intergenic	intergenic	TRA	11853.9	0.09	precise	AGGA	Alt-EJ
117	bp1	D106R1	somatic_tumour	2R	19616497	sm	intron	X	21243323	CG32521	intron	TRA	1626.8	0.25	precise	0	NHEJ
117	bp2	D106R1	somatic_tumour	X	21243323	CG32521	intron	2R	19616497	sm	intron	TRA	1626.8	0.25	precise	0	NHEJ
118	bp1	D106R1	somatic_tumour	2R	19864564	intergenic	intergenic	2R	21577542	intergenic	intergenic	BND	1713.0	0.1	precise	AAA	Alt-EJ
118	bp2	D106R1	somatic_tumour	2R	21577542	intergenic	intergenic	2R	19864564	intergenic	intergenic	BND	1713.0	0.1	precise	AAA	Alt-EJ
120	bp1	D106R1	somatic_tumour	2R	20274536	intergenic	intergenic	3R	21246770	intergenic	intergenic	TRA	972.2	0.12	precise	0	NHEJ
120	bp2	D106R1	somatic_tumour	3R	21246770	intergenic	intergenic	2R	20274536	intergenic	intergenic	TRA	972.2	0.12	precise	0	NHEJ
135	bp1	D106R1	somatic_tumour	2R	24804025	intergenic	intergenic	3L	10449427	intergenic	intergenic	TRA	14354.6	0.09	precise	0	NHEJ
135	bp2	D106R1	somatic_tumour	3L	10449427	intergenic	intergenic	2R	24804025	intergenic	intergenic	TRA	14354.6	0.09	precise	0	NHEJ
136	bp1	D106R1	somatic_tumour	2R	25011229	zip	intron	3L	8873017	dally	intron	TRA	16138.2	0.06	precise	TTTC	Alt-EJ
136	bp2	D106R1	somatic_tumour	3L	8873017	dally	intron	2R	25011229	zip	intron	TRA	16138.2	0.06	precise	TTTC	Alt-EJ
143	bp1	D106R1	somatic_tumour	3L	770038	intergenic	intergenic	3L	772255	intergenic	intergenic	DUP	2.2	0.47	imprecise	0	-
143	bp2	D106R1	somatic_tumour	3L	772255	intergenic	intergenic	3L	770038	intergenic	intergenic	DUP	2.2	0.47	imprecise	0	-
164	bp1	D106R1	somatic_tumour	3L	6324362	intergenic	intergenic	3L	6334708	CG13300	intron	DUP	10.3	0.31	imprecise	0	-
164	bp2	D106R1	somatic_tumour	3L	6334708	CG13300	intron	3L	6324362	intergenic	intergenic	DUP	10.3	0.31	imprecise	0	-
179	bp1	D106R1	somatic_tumour	3L	15782823	intergenic	intergenic	3L	15801298	intergenic	intergenic	DUP	18.5	0.32	imprecise	0	-
179	bp2	D106R1	somatic_tumour	3L	15801298	intergenic	intergenic	3L	15782823	intergenic	intergenic	DUP	18.5	0.32	imprecise	0	-
185	bp1	D106R1	somatic_tumour	3L	17193889	Rbp6	intron	2R	20632242	Rcd6	intron	TRA	3438.4	0.07	precise	GGGCTGT	Alt-EJ
185	bp2	D106R1	somatic_tumour	2R	20632242	Rcd6	intron	3L	17193889	Rbp6	intron	TRA	3438.4	0.07	precise	GGGCTGT	Alt-EJ
187	bp1	D106R1	somatic_tumour	3L	17591895	Eip74EF	intron	3L	17600024	Eip74EF	intron	DUP	8.1	0.4	imprecise	0	-
187	bp2	D106R1	somatic_tumour	3L	17600024	Eip74EF	intron	3L	17591895	Eip74EF	intron	DUP	8.1	0.4	imprecise	0	-
193	bp1	D106R1	somatic_tumour	3L	19691046	verm	exon	3R	9825857	intergenic	intergenic	TRA	9865.2	0.07	precise	0	NHEJ
193	bp2	D106R1	somatic_tumour	3R	9825857	intergenic	intergenic	3L	19691046	verm	exon	TRA	9865.2	0.07	precise	0	NHEJ
194	bp1	D106R1	somatic_tumour	3L	20006935	kug	intron	3R	24241046	mask	intron	TRA	4234.1	0.12	precise	0	NHEJ
194	bp2	D106R1	somatic_tumour	3R	24241046	mask	intron	3L	20006935	kug	intron	TRA	4234.1	0.12	precise	0	NHEJ
196	bp1	D106R1	somatic_tumour	3L	20393522	CG33969	5UTR	4	626084	intergenic	intergenic	TRA	19767.4	0.09	precise	CCCAC	Alt-EJ
196	bp2	D106R1	somatic_tumour	4	626084	intergenic	intergenic	3L	20393522	CG33969	5UTR	TRA	19767.4	0.09	precise	CCCAC	Alt-EJ
200	bp1	D106R1	somatic_tumour	3L	22036980	Oct-TyrR	intron	3L	22046587	Oct-TyrR	intron	DUP	9.6	0.34	imprecise	0	-
200	bp2	D106R1	somatic_tumour	3L	22046587	Oct-TyrR	intron	3L	22036980	Oct-TyrR	intron	DUP	9.6	0.34	imprecise	0	-
206	bp1	D106R1	somatic_tumour	3L	25106047	intergenic	intergenic	3L	25108264	Set1	intron	DUP	2.2	0.43	imprecise	0	-
206	bp2	D106R1	somatic_tumour	3L	25108264	Set1	intron	3L	25106047	intergenic	intergenic	DUP	2.2	0.43	imprecise	0	-
225	bp1	D106R1	somatic_tumour	3R	10454305	intergenic	intergenic	X	11008343	CG42339	intron	TRA	554.0	0.11	precise	AAAT	Alt-EJ
225	bp2	D106R1	somatic_tumour	X	11008343	CG42339	intron	3R	10454305	intergenic	intergenic	TRA	554.0	0.11	precise	AAAT	Alt-EJ
247	bp1	D106R1	somatic_tumour	3R	14796796	CG14855	exon_1	2L	17053333	intergenic	intergenic	TRA	2256.5	0.46	precise	GGATGAGCAGAA	Alt-EJ
247	bp2	D106R1	somatic_tumour	2L	17053333	intergenic	intergenic	3R	14796796	CG14855	exon_1	TRA	2256.5	0.46	precise	GGATGAGCAGAA	Alt-EJ
248	bp1	D106R1	somatic_tumour	3R	15170192	Gyc88E	intron	3R	15182755	Gyc88E	intron	DUP	12.6	0.34	imprecise	0	-
248	bp2	D106R1	somatic_tumour	3R	15182755	Gyc88E	intron	3R	15170192	Gyc88E	intron	DUP	12.6	0.34	imprecise	0	-
269	bp1	D106R1	somatic_tumour	3R	19616016	intergenic	intergenic	3R	19619711	CG6231	intron	DUP	3.7	0.44	imprecise	0	-
269	bp2	D106R1	somatic_tumour	3R	19619711	CG6231	intron	3R	19616016	intergenic	intergenic	DUP	3.7	0.44	imprecise	0	-
275	bp1	D106R1	somatic_tumour	3R	21879573	CR45046	exon_2	3R	21889180	CG6678	exon_4	DUP	9.6	0.32	imprecise	0	-
275	bp2	D106R1	somatic_tumour	3R	21889180	CG6678	exon_4	3R	21879573	CR45046	exon_2	DUP	9.6	0.32	imprecise	0	-
285	bp1	D106R1	somatic_tumour	3R	23882161	Pli	intron	X	795002	CG16989	exon	TRA	23087.2	0.06	precise	0	NHEJ
285	bp2	D106R1	somatic_tumour	X	795002	CG16989	exon	3R	23882161	Pli	intron	TRA	23087.2	0.06	precise	0	NHEJ
288	bp1	D106R1	somatic_tumour	3R	24323979	BRWD3	exon_9	2R	14690066	mspo	intron	TRA	9633.9	0.07	precise	GCAA	Alt-EJ
288	bp2	D106R1	somatic_tumour	2R	14690066	mspo	intron	3R	24323979	BRWD3	exon_9	TRA	9633.9	0.07	precise	GCAA	Alt-EJ
291	bp1	D106R1	somatic_tumour	3R	26026102	intergenic	intergenic	3R	26033492	E(spl)m6-BFM	3UTR	DUP	7.4	0.37	imprecise	0	-
291	bp2	D106R1	somatic_tumour	3R	26033492	E(spl)m6-BFM	3UTR	3R	26026102	intergenic	intergenic	DUP	7.4	0.37	imprecise	0	-
298	bp1	D106R1	somatic_tumour	3R	28446465	beat-VI	intron	3R	28789522	intergenic	intergenic	BND	343.1	0.07	precise	TGGCGTATGCGTAAT	Alt-EJ
298	bp2	D106R1	somatic_tumour	3R	28789522	intergenic	intergenic	3R	28446465	beat-VI	intron	BND	343.1	0.07	precise	TGGCGTATGCGTAAT	Alt-EJ
313	bp1	D106R1	somatic_tumour	4	376890	dati	intron	4	393148	dati	intron	DUP	16.3	0.39	imprecise	0	-
313	bp2	D106R1	somatic_tumour	4	393148	dati	intron	4	376890	dati	intron	DUP	16.3	0.39	imprecise	0	-
316	bp1	D106R1	somatic_tumour	4	854284	Gyf	intron	4	874976	unc-13	intron	DUP	20.7	0.38	imprecise	0	-
316	bp2	D106R1	somatic_tumour	4	874976	unc-13	intron	4	854284	Gyf	intron	DUP	20.7	0.38	imprecise	0	-
319	bp1	D106R1	somatic_tumour	X	1709179	CG3795	exon	3L	24938100	intergenic	intergenic	TRA	23228.9	0.07	precise	0	NHEJ
319	bp2	D106R1	somatic_tumour	3L	24938100	intergenic	intergenic	X	1709179	CG3795	exon	TRA	23228.9	0.07	precise	0	NHEJ
337	bp1	D106R1	somatic_tumour	X	7541977	CG32719	intron	3R	15395074	Rbp	intron	TRA	7853.1	0.08	precise	CGTTTGAA	Alt-EJ
337	bp2	D106R1	somatic_tumour	3R	15395074	Rbp	intron	X	7541977	CG32719	intron	TRA	7853.1	0.08	precise	CGTTTGAA	Alt-EJ
339	bp1	D106R1	somatic_tumour	X	8160492	CG15337	exon	2R	24310150	betaTub60D	intron	TRA	16149.7	0.07	precise	0	-
339	bp2	D106R1	somatic_tumour	2R	24310150	betaTub60D	intron	X	8160492	CG15337	exon	TRA	16149.7	0.07	precise	0	-
349	bp1	D106R1	somatic_tumour	X	13751782	Pdcd4	exon_2	2L	22725958	CG40006	intron	TRA	8974.2	0.07	precise	CC	Alt-EJ
349	bp2	D106R1	somatic_tumour	2L	22725958	CG40006	intron	X	13751782	Pdcd4	exon_2	TRA	8974.2	0.07	precise	CC	Alt-EJ
355	bp1	D106R1	somatic_tumour	X	15672636	intergenic	intergenic	3L	20809241	CG3634	5UTR	TRA	5136.6	0.08	precise	0	NHEJ
355	bp2	D106R1	somatic_tumour	3L	20809241	CG3634	5UTR	X	15672636	intergenic	intergenic	TRA	5136.6	0.08	precise	0	NHEJ
360	bp1	D106R1	somatic_tumour	X	17733783	CG42684	intron	X	17743390	CG42684	intron	DUP	9.6	0.34	imprecise	0	-
360	bp2	D106R1	somatic_tumour	X	17743390	CG42684	intron	X	17733783	CG42684	intron	DUP	9.6	0.34	imprecise	0	-
19	bp1	D106R21	somatic_tumour	2L	18303896	intergenic	intergenic	2L	19171464	brat	3UTR	DUP	867.6	0.12	imprecise	0	-
19	bp2	D106R21	somatic_tumour	2L	19171464	brat	3UTR	2L	18303896	intergenic	intergenic	DUP	867.6	0.12	imprecise	0	-
25	bp1	D106R21	somatic_tumour	2R	3573532	intergenic	intergenic	3L	12392168	intergenic	intergenic	TRA	8818.6	0.27	precise	AATAAGACG	Alt-EJ
25	bp2	D106R21	somatic_tumour	3L	12392168	intergenic	intergenic	2R	3573532	intergenic	intergenic	TRA	8818.6	0.27	precise	AATAAGACG	Alt-EJ
26	bp1	D106R21	somatic_tumour	2R	5250128	Nipped-A	intron	2R	5771116	Gp210	intron	DUP	521.0	0.11	imprecise	0	-
26	bp2	D106R21	somatic_tumour	2R	5771116	Gp210	intron	2R	5250128	Nipped-A	intron	DUP	521.0	0.11	imprecise	0	-
30	bp1	D106R21	somatic_tumour	2R	8504388	mtt	intron	3R	8522427	CG31454	exon_2	TRA	18.0	0.21	precise	0	NHEJ
30	bp2	D106R21	somatic_tumour	3R	8522427	CG31454	exon_2	2R	8504388	mtt	intron	TRA	18.0	0.21	precise	0	NHEJ
60	bp1	D106R21	somatic_tumour	3L	9145240	nwk	3UTR	3L	9172072	Rdl	intron	DUP	26.8	0.32	imprecise	0	-
60	bp2	D106R21	somatic_tumour	3L	9172072	Rdl	intron	3L	9145240	nwk	3UTR	DUP	26.8	0.32	imprecise	0	-
68	bp1	D106R21	somatic_tumour	3L	18751096	ftz-f1	3UTR	3L	18889728	CG3961	intron	DUP	138.6	0.07	imprecise	0	-
68	bp2	D106R21	somatic_tumour	3L	18889728	CG3961	intron	3L	18751096	ftz-f1	3UTR	DUP	138.6	0.07	imprecise	0	-
91	bp1	D106R21	somatic_tumour	3R	11525767	intergenic	intergenic	X	16884059	Nprl2	intron	TRA	5358.3	0.24	precise	CTC	Alt-EJ
91	bp2	D106R21	somatic_tumour	X	16884059	Nprl2	intron	3R	11525767	intergenic	intergenic	TRA	5358.3	0.24	precise	CTC	Alt-EJ
98	bp1	D106R21	somatic_tumour	3R	21311316	Hsromega	ncRNA	3R	21340384	CG16791	intron	DUP	29.1	0.18	imprecise	0	-
98	bp2	D106R21	somatic_tumour	3R	21340384	CG16791	intron	3R	21311316	Hsromega	ncRNA	DUP	29.1	0.18	imprecise	0	-
100	bp1	D106R21	somatic_tumour	3R	29459288	Ptp99A	intron	X	15810979	sd	intron	TRA	13648.3	0.45	precise	TTGGT	Alt-EJ
100	bp2	D106R21	somatic_tumour	X	15810979	sd	intron	3R	29459288	Ptp99A	intron	TRA	13648.3	0.45	precise	TTGGT	Alt-EJ
105	bp1	D106R21	somatic_tumour	4	93912	pan	intron	4	114036	pan	3UTR	DUP	20.1	0.41	imprecise	0	-
105	bp2	D106R21	somatic_tumour	4	114036	pan	3UTR	4	93912	pan	intron	DUP	20.1	0.41	imprecise	0	-
106	bp1	D106R21	somatic_tumour	4	114036	pan	3UTR	4	565708	Pur-alpha	exon	DUP	451.7	0.05	imprecise	0	-
106	bp2	D106R21	somatic_tumour	4	565708	Pur-alpha	exon	4	114036	pan	3UTR	DUP	451.7	0.05	imprecise	0	-
107	bp1	D106R21	somatic_tumour	4	608192	intergenic	intergenic	4	1348131	intergenic	intergenic	DUP	739.9	0.05	imprecise	0	-
107	bp2	D106R21	somatic_tumour	4	1348131	intergenic	intergenic	4	608192	intergenic	intergenic	DUP	739.9	0.05	imprecise	0	-
111	bp1	D106R21	somatic_tumour	X	3454620	CR44999	ncRNA	X	3700580	Mnt	intron	DUP	246.0	0.15	imprecise	0	-
111	bp2	D106R21	somatic_tumour	X	3700580	Mnt	intron	X	3454620	CR44999	ncRNA	DUP	246.0	0.15	imprecise	0	-
114	bp1	D106R21	somatic_tumour	X	4702308	l(1)G0334	intron	X	5388760	SK	intron	DUP	686.5	0.17	imprecise	0	-
114	bp2	D106R21	somatic_tumour	X	5388760	SK	intron	X	4702308	l(1)G0334	intron	DUP	686.5	0.17	imprecise	0	-
115	bp1	D106R21	somatic_tumour	X	5393232	SK	intron	X	5402176	SK	3UTR	DUP	8.9	0.42	imprecise	0	-
115	bp2	D106R21	somatic_tumour	X	5402176	SK	3UTR	X	5393232	SK	intron	DUP	8.9	0.42	imprecise	0	-
121	bp1	D106R21	somatic_tumour	X	9172072	mei-P26	3UTR	X	9183252	mei-P26	3UTR	DUP	11.2	0.43	imprecise	0	-
121	bp2	D106R21	somatic_tumour	X	9183252	mei-P26	3UTR	X	9172072	mei-P26	3UTR	DUP	11.2	0.43	imprecise	0	-
122	bp1	D106R21	somatic_tumour	X	11931296	cac	3UTR	X	11967072	cac	intron	DUP	35.8	0.34	imprecise	0	-
122	bp2	D106R21	somatic_tumour	X	11967072	cac	intron	X	11931296	cac	3UTR	DUP	35.8	0.34	imprecise	0	-
127	bp1	D106R21	somatic_tumour	X	13834132	AMPdeam	exon_3	X	13885560	mamo	intron	DUP	51.4	0.26	imprecise	0	-
127	bp2	D106R21	somatic_tumour	X	13885560	mamo	intron	X	13834132	AMPdeam	exon_3	DUP	51.4	0.26	imprecise	0	-
3	bp1	D106R23	somatic_tumour	2L	7831964	mts	3UTR	2R	11894390	Ef1alpha48D	exon	COMPLEX_TRA	4062.4	0.19	precise	0	-
3	bp2	D106R23	somatic_tumour	2R	11894390	Ef1alpha48D	exon	2L	7831964	mts	3UTR	COMPLEX_TRA	4062.4	0.19	precise	0	-
12	bp1	D106R23	somatic_tumour	2L	21641064	Ac3	intron	2L	21644502	Ac3	intron	DUP	3.4	0.41	imprecise	0	-
12	bp2	D106R23	somatic_tumour	2L	21644502	Ac3	intron	2L	21641064	Ac3	intron	DUP	3.4	0.41	imprecise	0	-
18	bp1	D106R23	somatic_tumour	2R	13582874	CG45088	exon_5	2R	13584102	CG45088	intron	DEL	1.2	0.35	precise	0	-
18	bp2	D106R23	somatic_tumour	2R	13584102	CG45088	intron	2R	13582874	CG45088	exon_5	DEL	1.2	0.35	precise	0	-
28	bp1	D106R23	somatic_tumour	4	91680	pan	exon_1	4	126633	Ank	intron	DUP	35.0	0.25	imprecise	0	-
28	bp2	D106R23	somatic_tumour	4	126633	Ank	intron	4	91680	pan	exon_1	DUP	35.0	0.25	imprecise	0	-
30	bp1	D106R23	somatic_tumour	4	410268	intergenic	intergenic	4	413706	intergenic	intergenic	COMPLEX_DUP	3.4	0.41	imprecise	0	-
30	bp2	D106R23	somatic_tumour	4	413706	intergenic	intergenic	4	410268	intergenic	intergenic	COMPLEX_DUP	3.4	0.41	imprecise	0	-
33	bp1	D106R23	somatic_tumour	4	1013637	PlexA	exon_10	4	1015356	PlexA	intron	DUP	1.7	0.45	imprecise	0	-
33	bp2	D106R23	somatic_tumour	4	1015356	PlexA	intron	4	1013637	PlexA	exon_10	DUP	1.7	0.45	imprecise	0	-
36	bp1	D106R23	somatic_tumour	X	2791083	w	exon	X	2793375	w	intron	DUP	2.3	0.91	imprecise	0	-
36	bp2	D106R23	somatic_tumour	X	2793375	w	intron	X	2791083	w	exon	DUP	2.3	0.91	imprecise	0	-
37	bp1	D106R23	somatic_tumour	X	3135343	N	5UTR	X	3140437	N	intron	DEL	5.1	0.53	precise	0	-
37	bp2	D106R23	somatic_tumour	X	3140437	N	intron	X	3135343	N	5UTR	DEL	5.1	0.53	precise	0	-
37	bp1	D106R23	somatic_tumour	X	3135456	N	5UTR	X	3140040	N	intron	DEL	4.6	0.9	imprecise	0	-
37	bp2	D106R23	somatic_tumour	X	3140040	N	intron	X	3135456	N	5UTR	DEL	4.6	0.9	imprecise	0	-
6	bp1	D106R25	somatic_tumour	2L	720533	intergenic	intergenic	2R	19579841	sm	intron	TRA	18859.3	0.17	precise	CTTC	Alt-EJ
6	bp2	D106R25	somatic_tumour	2R	19579841	sm	intron	2L	720533	intergenic	intergenic	TRA	18859.3	0.17	precise	CTTC	Alt-EJ
13	bp1	D106R25	somatic_tumour	2L	2163585	aop	intron	2L	2461707	intergenic	intergenic	BND	298.1	0.12	precise	0	NHEJ
13	bp2	D106R25	somatic_tumour	2L	2461707	intergenic	intergenic	2L	2163585	aop	intron	BND	298.1	0.12	precise	0	NHEJ
23	bp1	D106R25	somatic_tumour	2L	3809700	Reph	3UTR	2L	15393453	intergenic	intergenic	DEL	11583.8	0.1	precise	0	-
23	bp2	D106R25	somatic_tumour	2L	15393453	intergenic	intergenic	2L	3809700	Reph	3UTR	DEL	11583.8	0.1	precise	0	-
59	bp1	D106R25	somatic_tumour	2L	10250421	bsk	exon_1	3L	1679928	CG7991	intron	COMPLEX_TRA	8570.5	0.12	precise	0	-
59	bp2	D106R25	somatic_tumour	3L	1679928	CG7991	intron	2L	10250421	bsk	exon_1	COMPLEX_TRA	8570.5	0.12	precise	0	-
59	bp1	D106R25	somatic_tumour	2L	16916480	tweek	exon	2L	17451008	CR46204	exon_1	COMPLEX_DUP	534.5	0.37	imprecise	0	-
59	bp2	D106R25	somatic_tumour	2L	17451008	CR46204	exon_1	2L	16916480	tweek	exon	COMPLEX_DUP	534.5	0.37	imprecise	0	-
68	bp1	D106R25	somatic_tumour	2L	12454912	CR17024	exon_1	2L	12617728	Ref2	intron	DUP	162.8	0.41	imprecise	0	-
68	bp2	D106R25	somatic_tumour	2L	12617728	Ref2	intron	2L	12454912	CR17024	exon_1	DUP	162.8	0.41	imprecise	0	-
72	bp1	D106R25	somatic_tumour	2L	13148395	intergenic	intergenic	3R	29965289	TkR99D	intron	TRA	16816.9	0.12	precise	GCTG	Alt-EJ
72	bp2	D106R25	somatic_tumour	3R	29965289	TkR99D	intron	2L	13148395	intergenic	intergenic	TRA	16816.9	0.12	precise	GCTG	Alt-EJ
85	bp1	D106R25	somatic_tumour	2L	17531904	CG15145	exon_2	2L	18123776	CG5758	exon_2	DUP	591.9	0.29	imprecise	0	-
85	bp2	D106R25	somatic_tumour	2L	18123776	CG5758	exon_2	2L	17531904	CG15145	exon_2	DUP	591.9	0.29	imprecise	0	-
94	bp1	D106R25	somatic_tumour	2L	19593216	Lar	intron	2L	19696640	CG46244	intron	DUP	103.4	0.37	imprecise	0	-
94	bp2	D106R25	somatic_tumour	2L	19696640	CG46244	intron	2L	19593216	Lar	intron	DUP	103.4	0.37	imprecise	0	-
97	bp1	D106R25	somatic_tumour	2L	22747975	CG40006	intron	2R	23173956	CG34371	intron	TRA	426.0	0.13	precise	0	-
97	bp2	D106R25	somatic_tumour	2R	23173956	CG34371	intron	2L	22747975	CG40006	intron	TRA	426.0	0.13	precise	0	-
101	bp1	D106R25	somatic_tumour	2R	6605795	jing	intron	X	9629822	Ptpmeg2	exon_6	TRA	3024.0	0.11	precise	0	-
101	bp2	D106R25	somatic_tumour	X	9629822	Ptpmeg2	exon_6	2R	6605795	jing	intron	TRA	3024.0	0.11	precise	0	-
111	bp1	D106R25	somatic_tumour	2R	11135623	intergenic	intergenic	X	17792512	OdsH	intron	TRA	6656.9	0.14	precise	0	-
111	bp2	D106R25	somatic_tumour	X	17792512	OdsH	intron	2R	11135623	intergenic	intergenic	TRA	6656.9	0.14	precise	0	-
116	bp1	D106R25	somatic_tumour	2R	12259479	CR43900	ncRNA	3R	18928294	Mpc1	5UTR	TRA	6668.8	0.1	precise	0	-
116	bp2	D106R25	somatic_tumour	3R	18928294	Mpc1	5UTR	2R	12259479	CR43900	ncRNA	TRA	6668.8	0.1	precise	0	-
125	bp1	D106R25	somatic_tumour	2R	14509830	Asx	intron	3R	15589099	intergenic	intergenic	TRA	1079.3	0.11	precise	0	-
125	bp2	D106R25	somatic_tumour	3R	15589099	intergenic	intergenic	2R	14509830	Asx	intron	TRA	1079.3	0.11	precise	0	-
129	bp1	D106R25	somatic_tumour	2R	15499236	intergenic	intergenic	2R	23013562	CG42741	intron	BND	7514.3	0.1	precise	0	-
129	bp2	D106R25	somatic_tumour	2R	23013562	CG42741	intron	2R	15499236	intergenic	intergenic	BND	7514.3	0.1	precise	0	-
132	bp1	D106R25	somatic_tumour	2R	16385221	CG43187	3UTR	2R	17989583	dpr13	exon_2	BND	1604.4	0.06	precise	0	-
132	bp2	D106R25	somatic_tumour	2R	17989583	dpr13	exon_2	2R	16385221	CG43187	3UTR	BND	1604.4	0.06	precise	0	-
146	bp1	D106R25	somatic_tumour	2R	18951192	sano	intron	3L	9705332	CG16711	exon_1	TRA	9245.9	0.07	precise	0	-
146	bp2	D106R25	somatic_tumour	3L	9705332	CG16711	exon_1	2R	18951192	sano	intron	TRA	9245.9	0.07	precise	0	-
147	bp1	D106R25	somatic_tumour	2R	18970697	prod	exon_2	3R	32039211	CG2053	exon_1	TRA	13068.5	0.09	precise	0	-
147	bp2	D106R25	somatic_tumour	3R	32039211	CG2053	exon_1	2R	18970697	prod	exon_2	TRA	13068.5	0.09	precise	0	-
151	bp1	D106R25	somatic_tumour	2R	19856257	intergenic	intergenic	2R	19860148	intergenic	intergenic	DEL	3.9	0.19	precise	0	-
151	bp2	D106R25	somatic_tumour	2R	19860148	intergenic	intergenic	2R	19856257	intergenic	intergenic	DEL	3.9	0.19	precise	0	-
170	bp1	D106R25	somatic_tumour	3L	0	intergenic	intergenic	3L	141312	Pdk1	exon_1	COMPLEX_DUP	141.3	0.31	imprecise	0	-
170	bp2	D106R25	somatic_tumour	3L	141312	Pdk1	exon_1	3L	0	intergenic	intergenic	COMPLEX_DUP	141.3	0.31	imprecise	0	-
176	bp1	D106R25	somatic_tumour	3L	662392	intergenic	intergenic	2L	5435490	intergenic	intergenic	TRA	4773.1	0.1	precise	0	-
176	bp2	D106R25	somatic_tumour	2L	5435490	intergenic	intergenic	3L	662392	intergenic	intergenic	TRA	4773.1	0.1	precise	0	-
181	bp1	D106R25	somatic_tumour	3L	1018999	trio	exon_2	3L	1056277	bab1	intron	COMPLEX_DEL	37.3	0.47	imprecise	0	-
181	bp2	D106R25	somatic_tumour	3L	1056277	bab1	intron	3L	1018999	trio	exon_2	COMPLEX_DEL	37.3	0.47	imprecise	0	-
181	bp1	D106R25	somatic_tumour	3L	1019000	trio	exon_2	3L	1563588	CG7879	intron	COMPLEX_DEL	544.6	0.36	precise	0	-
181	bp2	D106R25	somatic_tumour	3L	1563588	CG7879	intron	3L	1019000	trio	exon_2	COMPLEX_DEL	544.6	0.36	precise	0	-
181	bp1	D106R25	somatic_tumour	3L	1056277	bab1	intron	X	2955861	rst	intron	COMPLEX_TRA	1899.6	0.8	precise	0	-
181	bp2	D106R25	somatic_tumour	X	2955861	rst	intron	3L	1056277	bab1	intron	COMPLEX_TRA	1899.6	0.8	precise	0	-
181	bp1	D106R25	somatic_tumour	3L	1056277	bab1	intron	X	2956112	rst	exon_5	COMPLEX_TRA	1899.8	0.68	precise	0	-
181	bp2	D106R25	somatic_tumour	X	2956112	rst	exon_5	3L	1056277	bab1	intron	COMPLEX_TRA	1899.8	0.68	precise	0	-
181	bp1	D106R25	somatic_tumour	X	2955393	rst	intron	X	2955861	rst	intron	COMPLEX_DEL	0.5	0.96	precise	0	-
181	bp2	D106R25	somatic_tumour	X	2955861	rst	intron	X	2955393	rst	intron	COMPLEX_DEL	0.5	0.96	precise	0	-
181	bp1	D106R25	somatic_tumour	X	2956113	rst	exon_5	X	3275824	dnc	intron	COMPLEX_DEL	319.7	0.91	precise	0	-
181	bp2	D106R25	somatic_tumour	X	3275824	dnc	intron	X	2956113	rst	exon_5	COMPLEX_DEL	319.7	0.91	precise	0	-
195	bp1	D106R25	somatic_tumour	3L	5309440	intergenic	intergenic	3L	5559296	intergenic	intergenic	DUP	249.9	0.28	imprecise	0	-
195	bp2	D106R25	somatic_tumour	3L	5559296	intergenic	intergenic	3L	5309440	intergenic	intergenic	DUP	249.9	0.28	imprecise	0	-
196	bp1	D106R25	somatic_tumour	3L	5258479	shep	intron	3L	11002401	klu	intron	BND	5743.9	0.06	precise	0	-
196	bp2	D106R25	somatic_tumour	3L	11002401	klu	intron	3L	5258479	shep	intron	BND	5743.9	0.06	precise	0	-
242	bp1	D106R25	somatic_tumour	3L	16144384	CG5151	intron	3L	16224256	intergenic	intergenic	DUP	79.9	0.41	imprecise	0	-
242	bp2	D106R25	somatic_tumour	3L	16224256	intergenic	intergenic	3L	16144384	CG5151	intron	DUP	79.9	0.41	imprecise	0	-
252	bp1	D106R25	somatic_tumour	3L	19934208	intergenic	intergenic	3L	19956736	Ac76E	intron	DUP	22.5	0.49	imprecise	0	-
252	bp2	D106R25	somatic_tumour	3L	19956736	Ac76E	intron	3L	19934208	intergenic	intergenic	DUP	22.5	0.49	imprecise	0	-
285	bp1	D106R25	somatic_tumour	3R	7480141	intergenic	intergenic	3R	10531342	hth	intron	BND	3051.2	0.05	precise	0	-
285	bp2	D106R25	somatic_tumour	3R	10531342	hth	intron	3R	7480141	intergenic	intergenic	BND	3051.2	0.05	precise	0	-
287	bp1	D106R25	somatic_tumour	3R	8430479	CG45263	intron	3R	18030144	intergenic	intergenic	DEL	9599.7	0.07	precise	0	-
287	bp2	D106R25	somatic_tumour	3R	18030144	intergenic	intergenic	3R	8430479	CG45263	intron	DEL	9599.7	0.07	precise	0	-
291	bp1	D106R25	somatic_tumour	3R	8841216	pyd	intron	3R	8980480	intergenic	intergenic	DUP	139.3	0.35	imprecise	0	-
291	bp2	D106R25	somatic_tumour	3R	8980480	intergenic	intergenic	3R	8841216	pyd	intron	DUP	139.3	0.35	imprecise	0	-
299	bp1	D106R25	somatic_tumour	3R	9591808	CG8312	exon_1	3R	9621504	CG8312	intron	DUP	29.7	0.43	imprecise	0	-
299	bp2	D106R25	somatic_tumour	3R	9621504	CG8312	intron	3R	9591808	CG8312	exon_1	DUP	29.7	0.43	imprecise	0	-
300	bp1	D106R25	somatic_tumour	3R	9821735	CR45790	exon_1	3R	30528249	intergenic	intergenic	TANDUP	20706.5	0.07	precise	0	-
300	bp2	D106R25	somatic_tumour	3R	30528249	intergenic	intergenic	3R	9821735	CR45790	exon_1	TANDUP	20706.5	0.07	precise	0	-
309	bp1	D106R25	somatic_tumour	3R	10895360	Leash	3UTR	3R	11339776	pros	intron	DUP	444.4	0.25	imprecise	0	-
309	bp2	D106R25	somatic_tumour	3R	11339776	pros	intron	3R	10895360	Leash	3UTR	DUP	444.4	0.25	imprecise	0	-
311	bp1	D106R25	somatic_tumour	3R	11452075	CG17230	intron	3R	17385817	lute	intron	BND	5933.7	0.09	precise	0	-
311	bp2	D106R25	somatic_tumour	3R	17385817	lute	intron	3R	11452075	CG17230	intron	BND	5933.7	0.09	precise	0	-
313	bp1	D106R25	somatic_tumour	3R	12721152	Men	intron	3R	12940288	intergenic	intergenic	DUP	219.1	0.38	imprecise	0	-
313	bp2	D106R25	somatic_tumour	3R	12940288	intergenic	intergenic	3R	12721152	Men	intron	DUP	219.1	0.38	imprecise	0	-
316	bp1	D106R25	somatic_tumour	3R	15148032	intergenic	intergenic	3R	15185920	Gyc88E	intron	DUP	37.9	0.48	imprecise	0	-
316	bp2	D106R25	somatic_tumour	3R	15185920	Gyc88E	intron	3R	15148032	intergenic	intergenic	DUP	37.9	0.48	imprecise	0	-
321	bp1	D106R25	somatic_tumour	3R	13855558	intergenic	intergenic	2L	4704205	CG34351	intron	TRA	9151.4	0.08	precise	0	-
321	bp2	D106R25	somatic_tumour	2L	4704205	CG34351	intron	3R	13855558	intergenic	intergenic	TRA	9151.4	0.08	precise	0	-
322	bp1	D106R25	somatic_tumour	3R	14992522	intergenic	intergenic	3R	30290266	hdc	intron	BND	15297.7	0.06	precise	0	-
322	bp2	D106R25	somatic_tumour	3R	30290266	hdc	intron	3R	14992522	intergenic	intergenic	BND	15297.7	0.06	precise	0	-
324	bp1	D106R25	somatic_tumour	3R	15278080	l(3)neo43	3UTR	3R	15311872	Tm2	intron	DUP	33.8	0.36	imprecise	0	-
324	bp2	D106R25	somatic_tumour	3R	15311872	Tm2	intron	3R	15278080	l(3)neo43	3UTR	DUP	33.8	0.36	imprecise	0	-
335	bp1	D106R25	somatic_tumour	3R	17120013	cher	intron	2R	18162537	CG10915	intron	TRA	1042.5	0.11	precise	0	-
335	bp2	D106R25	somatic_tumour	2R	18162537	CG10915	intron	3R	17120013	cher	intron	TRA	1042.5	0.11	precise	0	-
338	bp1	D106R25	somatic_tumour	3R	17898496	Rim	intron	3R	18158592	CR45104	exon_1	DUP	260.1	0.27	imprecise	0	-
338	bp2	D106R25	somatic_tumour	3R	18158592	CR45104	exon_1	3R	17898496	Rim	intron	DUP	260.1	0.27	imprecise	0	-
355	bp1	D106R25	somatic_tumour	3R	22464852	intergenic	intergenic	2L	14023950	CR31840	ncRNA	TRA	8440.9	0.13	precise	0	-
355	bp2	D106R25	somatic_tumour	2L	14023950	CR31840	ncRNA	3R	22464852	intergenic	intergenic	TRA	8440.9	0.13	precise	0	-
366	bp1	D106R25	somatic_tumour	3R	25052198	CG11791	intron	3L	7654700	CG7492	exon_1	TRA	17397.5	0.16	precise	0	-
366	bp2	D106R25	somatic_tumour	3L	7654700	CG7492	exon_1	3R	25052198	CG11791	intron	TRA	17397.5	0.16	precise	0	-
379	bp1	D106R25	somatic_tumour	3R	29152675	Slbp	exon	2L	2923810	lilli	intron	TRA	26228.9	0.13	precise	0	-
379	bp2	D106R25	somatic_tumour	2L	2923810	lilli	intron	3R	29152675	Slbp	exon	TRA	26228.9	0.13	precise	0	-
381	bp1	D106R25	somatic_tumour	3R	29357981	intergenic	intergenic	3L	9040826	intergenic	intergenic	TRA	20317.2	0.07	precise	0	-
381	bp2	D106R25	somatic_tumour	3L	9040826	intergenic	intergenic	3R	29357981	intergenic	intergenic	TRA	20317.2	0.07	precise	0	-
385	bp1	D106R25	somatic_tumour	3R	30426360	CG2218	exon	3L	874623	Usp10	exon_3	TRA	29551.7	0.06	precise	0	-
385	bp2	D106R25	somatic_tumour	3L	874623	Usp10	exon_3	3R	30426360	CG2218	exon	TRA	29551.7	0.06	precise	0	-
390	bp1	D106R25	somatic_tumour	4	0	intergenic	intergenic	4	374784	Hcf	3UTR	DUP	374.8	0.36	imprecise	0	-
390	bp2	D106R25	somatic_tumour	4	374784	Hcf	3UTR	4	0	intergenic	intergenic	DUP	374.8	0.36	imprecise	0	-
397	bp1	D106R25	somatic_tumour	4	535552	zfh2	exon_11	4	545792	Thd1	exon	DUP	10.2	0.49	imprecise	0	-
397	bp2	D106R25	somatic_tumour	4	545792	Thd1	exon	4	535552	zfh2	exon_11	DUP	10.2	0.49	imprecise	0	-
397	bp1	D106R25	somatic_tumour	4	599040	onecut	3UTR	4	746496	bt	exon_24	DUP	147.5	0.28	imprecise	0	-
397	bp2	D106R25	somatic_tumour	4	746496	bt	exon_24	4	599040	onecut	3UTR	DUP	147.5	0.28	imprecise	0	-
400	bp1	D106R25	somatic_tumour	4	769024	bt	exon_35	4	786432	MED26	exon_3	DUP	17.4	0.42	imprecise	0	-
400	bp2	D106R25	somatic_tumour	4	786432	MED26	exon_3	4	769024	bt	exon_35	DUP	17.4	0.42	imprecise	0	-
402	bp1	D106R25	somatic_tumour	4	905216	CR43361	exon_1	4	1006592	toy	3UTR	DUP	101.4	0.38	imprecise	0	-
402	bp2	D106R25	somatic_tumour	4	1006592	toy	3UTR	4	905216	CR43361	exon_1	DUP	101.4	0.38	imprecise	0	-
404	bp1	D106R25	somatic_tumour	4	1006592	toy	3UTR	4	1013760	PlexA	exon_10	DUP	7.2	0.46	imprecise	0	-
404	bp2	D106R25	somatic_tumour	4	1013760	PlexA	exon_10	4	1006592	toy	3UTR	DUP	7.2	0.46	imprecise	0	-
404	bp1	D106R25	somatic_tumour	4	1031168	CG11076	intron	4	1065984	apolpp	exon_4	DUP	34.8	0.46	imprecise	0	-
404	bp2	D106R25	somatic_tumour	4	1065984	apolpp	exon_4	4	1031168	CG11076	intron	DUP	34.8	0.46	imprecise	0	-
411	bp1	D106R25	somatic_tumour	X	2501632	trol	exon_2	X	2567168	Pdfr	intron	DUP	65.5	0.78	imprecise	0	-
411	bp2	D106R25	somatic_tumour	X	2567168	Pdfr	intron	X	2501632	trol	exon_2	DUP	65.5	0.78	imprecise	0	-
412	bp1	D106R25	somatic_tumour	X	2738176	crm	exon_2	X	2955264	rst	intron	DUP	217.1	0.67	imprecise	0	-
412	bp2	D106R25	somatic_tumour	X	2955264	rst	intron	X	2738176	crm	exon_2	DUP	217.1	0.67	imprecise	0	-
415	bp1	D106R25	somatic_tumour	3L	3454007	eIF5B	intron	X	3275824	dnc	intron	COMPLEX_TRA	178.2	0.54	precise	0	-
415	bp2	D106R25	somatic_tumour	X	3275824	dnc	intron	3L	3454007	eIF5B	intron	COMPLEX_TRA	178.2	0.54	precise	0	-
415	bp1	D106R25	somatic_tumour	X	4973568	CR44833	ncRNA	X	5035008	CR44833	ncRNA	COMPLEX_DUP	61.4	0.99	imprecise	0	-
415	bp2	D106R25	somatic_tumour	X	5035008	CR44833	ncRNA	X	4973568	CR44833	ncRNA	COMPLEX_DUP	61.4	0.99	imprecise	0	-
422	bp1	D106R25	somatic_tumour	X	8176640	slpr	exon_2	X	9061376	CG15365	intron	DUP	884.7	0.63	imprecise	0	-
422	bp2	D106R25	somatic_tumour	X	9061376	CG15365	intron	X	8176640	slpr	exon_2	DUP	884.7	0.63	imprecise	0	-
422	bp1	D106R25	somatic_tumour	X	9061376	CG15365	intron	X	9068544	intergenic	intergenic	DUP	7.2	0.9	imprecise	0	-
422	bp2	D106R25	somatic_tumour	X	9068544	intergenic	intergenic	X	9061376	CG15365	intron	DUP	7.2	0.9	imprecise	0	-
425	bp1	D106R25	somatic_tumour	X	9377792	mgl	intron	X	9551872	l(1)G0320	3UTR	DUP	174.1	0.96	imprecise	0	-
425	bp2	D106R25	somatic_tumour	X	9551872	l(1)G0320	3UTR	X	9377792	mgl	intron	DUP	174.1	0.96	imprecise	0	-
426	bp1	D106R25	somatic_tumour	X	10289152	alpha-Man-Ia	intron	X	10315776	alpha-Man-Ia	intron	DUP	26.6	0.97	imprecise	0	-
426	bp2	D106R25	somatic_tumour	X	10315776	alpha-Man-Ia	intron	X	10289152	alpha-Man-Ia	intron	DUP	26.6	0.97	imprecise	0	-
438	bp1	D106R25	somatic_tumour	X	18903040	CG7378	intron	X	19117056	intergenic	intergenic	DUP	214.0	0.7	imprecise	0	-
438	bp2	D106R25	somatic_tumour	X	19117056	intergenic	intergenic	X	18903040	CG7378	intron	DUP	214.0	0.7	imprecise	0	-
441	bp1	D106R25	somatic_tumour	X	20129197	intergenic	intergenic	2R	14604361	intergenic	intergenic	TRA	5524.8	0.17	precise	0	-
441	bp2	D106R25	somatic_tumour	2R	14604361	intergenic	intergenic	X	20129197	intergenic	intergenic	TRA	5524.8	0.17	precise	0	-
4	bp1	D106R27	somatic_tumour	2L	10994008	CG16833	exon_10	2L	10997840	aub	3UTR	DUP	3.8	0.48	imprecise	0	-
4	bp2	D106R27	somatic_tumour	2L	10997840	aub	3UTR	2L	10994008	CG16833	exon_10	DUP	3.8	0.48	imprecise	0	-
5	bp1	D106R27	somatic_tumour	2L	16177746	Ca-alpha1D	exon_17	2L	16182536	Ca-alpha1D	intron	DUP	4.8	0.42	imprecise	0	-
5	bp2	D106R27	somatic_tumour	2L	16182536	Ca-alpha1D	intron	2L	16177746	Ca-alpha1D	exon_17	DUP	4.8	0.42	imprecise	0	-
8	bp1	D106R27	somatic_tumour	2L	21298256	Mondo	intron	2L	21307836	Mondo	intron	DUP	9.6	0.38	imprecise	0	-
8	bp2	D106R27	somatic_tumour	2L	21307836	Mondo	intron	2L	21298256	Mondo	intron	DUP	9.6	0.38	imprecise	0	-
13	bp1	D106R27	somatic_tumour	2R	4693242	Nipped-B	intron	2R	4701864	Nipped-B	intron	DUP	8.6	0.41	imprecise	0	-
13	bp2	D106R27	somatic_tumour	2R	4701864	Nipped-B	intron	2R	4693242	Nipped-B	intron	DUP	8.6	0.41	imprecise	0	-
16	bp1	D106R27	somatic_tumour	2R	14379013	Dh44-R1	intron	2R	22170535	a	exon_6	BND	7791.5	0.03	precise	0	-
16	bp2	D106R27	somatic_tumour	2R	22170535	a	exon_6	2R	14379013	Dh44-R1	intron	BND	7791.5	0.03	precise	0	-
23	bp1	D106R27	somatic_tumour	3L	15551214	CrebA	exon	3L	15554088	intergenic	intergenic	DUP	2.9	0.48	imprecise	0	-
23	bp2	D106R27	somatic_tumour	3L	15554088	intergenic	intergenic	3L	15551214	CrebA	exon	DUP	2.9	0.48	imprecise	0	-
27	bp1	D106R27	somatic_tumour	3L	24728854	scro	intron	3L	24748014	scro	intron	DUP	19.2	0.36	imprecise	0	-
27	bp2	D106R27	somatic_tumour	3L	24748014	scro	intron	3L	24728854	scro	intron	DUP	19.2	0.36	imprecise	0	-
28	bp1	D106R27	somatic_tumour	3L	26002036	CG40178	intron	3L	26014490	intergenic	intergenic	DUP	12.5	0.38	imprecise	0	-
28	bp2	D106R27	somatic_tumour	3L	26014490	intergenic	intergenic	3L	26002036	CG40178	intron	DUP	12.5	0.38	imprecise	0	-
29	bp1	D106R27	somatic_tumour	3R	4078206	CG42402	exon_1	3R	4081080	CG42402	intron	DUP	2.9	0.5	imprecise	0	-
29	bp2	D106R27	somatic_tumour	3R	4081080	CG42402	intron	3R	4078206	CG42402	exon_1	DUP	2.9	0.5	imprecise	0	-
30	bp1	D106R27	somatic_tumour	3R	4168258	intergenic	intergenic	3R	4171132	intergenic	intergenic	DUP	2.9	0.47	imprecise	0	-
30	bp2	D106R27	somatic_tumour	3R	4171132	intergenic	intergenic	3R	4168258	intergenic	intergenic	DUP	2.9	0.47	imprecise	0	-
34	bp1	D106R27	somatic_tumour	3R	15299260	Tm1	intron	3R	15310756	Tm2	exon_1	DUP	11.5	0.34	imprecise	0	-
34	bp2	D106R27	somatic_tumour	3R	15310756	Tm2	exon_1	3R	15299260	Tm1	intron	DUP	11.5	0.34	imprecise	0	-
37	bp1	D106R27	somatic_tumour	3R	22071362	how	exon_6	3R	22079026	how	exon_9	DUP	7.7	0.32	imprecise	0	-
37	bp2	D106R27	somatic_tumour	3R	22079026	how	exon_9	3R	22071362	how	exon_6	DUP	7.7	0.32	imprecise	0	-
38	bp1	D106R27	somatic_tumour	3R	24062086	SMC1	exon_9	3R	24067834	4EHP	3UTR	DUP	5.7	0.39	imprecise	0	-
38	bp2	D106R27	somatic_tumour	3R	24067834	4EHP	3UTR	3R	24062086	SMC1	exon_9	DUP	5.7	0.39	imprecise	0	-
39	bp1	D106R27	somatic_tumour	3R	25493338	intergenic	intergenic	3R	25496212	CR44948	exon_2	DUP	2.9	0.45	imprecise	0	-
39	bp2	D106R27	somatic_tumour	3R	25496212	CR44948	exon_2	3R	25493338	intergenic	intergenic	DUP	2.9	0.45	imprecise	0	-
44	bp1	D106R27	somatic_tumour	4	558514	Pur-alpha	intron	4	571926	Ephrin	exon_1	DUP	13.4	0.41	imprecise	0	-
44	bp2	D106R27	somatic_tumour	4	571926	Ephrin	exon_1	4	558514	Pur-alpha	intron	DUP	13.4	0.41	imprecise	0	-
46	bp1	D106R27	somatic_tumour	4	1190794	CG33521	intron	4	1198458	intergenic	intergenic	DUP	7.7	0.47	imprecise	0	-
46	bp2	D106R27	somatic_tumour	4	1198458	intergenic	intergenic	4	1190794	CG33521	intron	DUP	7.7	0.47	imprecise	0	-
50	bp1	D106R27	somatic_tumour	X	3146021	N	intron	X	3245519	dnc	exon_3	DEL	99.5	0.95	precise	0	-
50	bp2	D106R27	somatic_tumour	X	3245519	dnc	exon_3	X	3146021	N	intron	DEL	99.5	0.95	precise	0	-
50	bp1	D106R27	somatic_tumour	X	3146072	N	intron	X	3245704	dnc	exon_3	DEL	99.6	0.95	imprecise	0	-
50	bp2	D106R27	somatic_tumour	X	3245704	dnc	exon_3	X	3146072	N	intron	DEL	99.6	0.95	imprecise	0	-
2	bp1	D106R29	somatic_tumour	2R	16271743	Khc	5UTR	3R	26322116	CG33970	intron	TRA	10050.4	0.04	precise	0	-
2	bp2	D106R29	somatic_tumour	3R	26322116	CG33970	intron	2R	16271743	Khc	5UTR	TRA	10050.4	0.04	precise	0	-
18	bp1	D106R29	somatic_tumour	2L	11851245	Mal-B2	exon_2	2L	11856915	Pde1c	intron	DEL	5.7	0.5	imprecise	0	-
18	bp2	D106R29	somatic_tumour	2L	11856915	Pde1c	intron	2L	11851245	Mal-B2	exon_2	DEL	5.7	0.5	imprecise	0	-
23	bp1	D106R29	somatic_tumour	2L	13830336	Orc5	exon_1	3L	11165569	Alg10	exon_2	TRA	2664.8	0.06	precise	0	-
23	bp2	D106R29	somatic_tumour	3L	11165569	Alg10	exon_2	2L	13830336	Orc5	exon_1	TRA	2664.8	0.06	precise	0	-
28	bp1	D106R29	somatic_tumour	2L	16657137	CG42389	5UTR	2L	16657673	CG42389	exon_4	DEL	0.5	0.11	precise	0	-
28	bp2	D106R29	somatic_tumour	2L	16657673	CG42389	exon_4	2L	16657137	CG42389	5UTR	DEL	0.5	0.11	precise	0	-
29	bp1	D106R29	somatic_tumour	2L	16981650	beat-IIIb	intron	2L	17007165	intergenic	intergenic	DUP	25.5	0.31	imprecise	0	-
29	bp2	D106R29	somatic_tumour	2L	17007165	intergenic	intergenic	2L	16981650	beat-IIIb	intron	DUP	25.5	0.31	imprecise	0	-
40	bp1	D106R29	somatic_tumour	2R	5423581	laccase2	intron	3R	26700737	amon	exon_8	TRA	21277.2	0.08	precise	0	-
40	bp2	D106R29	somatic_tumour	3R	26700737	amon	exon_8	2R	5423581	laccase2	intron	TRA	21277.2	0.08	precise	0	-
42	bp1	D106R29	somatic_tumour	2R	5720085	ap	intron	2R	5722920	ap	intron	DUP	2.8	0.46	imprecise	0	-
42	bp2	D106R29	somatic_tumour	2R	5722920	ap	intron	2R	5720085	ap	intron	DUP	2.8	0.46	imprecise	0	-
70	bp1	D106R29	somatic_tumour	3L	1013729	trio	intron	3R	14926092	intergenic	intergenic	TRA	13912.4	0.05	precise	0	-
70	bp2	D106R29	somatic_tumour	3R	14926092	intergenic	intergenic	3L	1013729	trio	intron	TRA	13912.4	0.05	precise	0	-
77	bp1	D106R29	somatic_tumour	3L	3450239	eIF5B	intron	3L	3450565	eIF5B	intron	DEL	0.3	0.23	precise	0	-
77	bp2	D106R29	somatic_tumour	3L	3450565	eIF5B	intron	3L	3450239	eIF5B	intron	DEL	0.3	0.23	precise	0	-
85	bp1	D106R29	somatic_tumour	3L	6774868	intergenic	intergenic	X	918170	CG43867	intron	TRA	5856.7	0.06	precise	0	-
85	bp2	D106R29	somatic_tumour	X	918170	CG43867	intron	3L	6774868	intergenic	intergenic	TRA	5856.7	0.06	precise	0	-
115	bp1	D106R29	somatic_tumour	3L	19887596	Mi-2	exon_4	X	15186910	CG43737	exon	TRA	4700.7	0.07	precise	0	-
115	bp2	D106R29	somatic_tumour	X	15186910	CG43737	exon	3L	19887596	Mi-2	exon_4	TRA	4700.7	0.07	precise	0	-
119	bp1	D106R29	somatic_tumour	3L	20870098	CG32432	intron	3R	25477350	MED28	exon	TRA	4607.3	0.04	precise	0	-
119	bp2	D106R29	somatic_tumour	3R	25477350	MED28	exon	3L	20870098	CG32432	intron	TRA	4607.3	0.04	precise	0	-
123	bp1	D106R29	somatic_tumour	3L	23446395	intergenic	intergenic	3L	23449230	intergenic	intergenic	DUP	2.8	0.42	imprecise	0	-
123	bp2	D106R29	somatic_tumour	3L	23449230	intergenic	intergenic	3L	23446395	intergenic	intergenic	DUP	2.8	0.42	imprecise	0	-
125	bp1	D106R29	somatic_tumour	3L	24230745	Snap25	intron	3L	24236415	Snap25	intron	DUP	5.7	0.41	imprecise	0	-
125	bp2	D106R29	somatic_tumour	3L	24236415	Snap25	intron	3L	24230745	Snap25	intron	DUP	5.7	0.41	imprecise	0	-
126	bp1	D106R29	somatic_tumour	3L	25605720	CG45782	intron	3L	25610445	CG45782	intron	DUP	4.7	0.42	imprecise	0	-
126	bp2	D106R29	somatic_tumour	3L	25610445	CG45782	intron	3L	25605720	CG45782	intron	DUP	4.7	0.42	imprecise	0	-
132	bp1	D106R29	somatic_tumour	3R	4163670	intergenic	intergenic	3R	4180680	CG12581	intron	DUP	17.0	0.45	imprecise	0	-
132	bp2	D106R29	somatic_tumour	3R	4180680	CG12581	intron	3R	4163670	intergenic	intergenic	DUP	17.0	0.45	imprecise	0	-
149	bp1	D106R29	somatic_tumour	3R	17750912	TyrR	3UTR	3R	18341929	CG15803	intron	BND	591.0	0.08	precise	0	-
149	bp2	D106R29	somatic_tumour	3R	18341929	CG15803	intron	3R	17750912	TyrR	3UTR	BND	591.0	0.08	precise	0	-
159	bp1	D106R29	somatic_tumour	4	385213	dati	intron	3L	6045215	intergenic	intergenic	TRA	5660.0	0.05	precise	0	-
159	bp2	D106R29	somatic_tumour	3L	6045215	intergenic	intergenic	4	385213	dati	intron	TRA	5660.0	0.05	precise	0	-
178	bp1	D106R29	somatic_tumour	X	20667011	CG1835	intron	3R	26146683	intergenic	intergenic	TRA	5479.7	0.1	precise	0	-
178	bp2	D106R29	somatic_tumour	3R	26146683	intergenic	intergenic	X	20667011	CG1835	intron	TRA	5479.7	0.1	precise	0	-
2	bp1	D106R31	somatic_tumour	2L	729105	Hsp60B	exon	2L	1531070	intergenic	intergenic	COMPLEX_DEL	802.0	0.1	precise	0	NHEJ
2	bp2	D106R31	somatic_tumour	2L	1531070	intergenic	intergenic	2L	729105	Hsp60B	exon	COMPLEX_DEL	802.0	0.1	precise	0	NHEJ
2	bp1	D106R31	somatic_tumour	2L	1440862	intergenic	intergenic	2L	1444311	intergenic	intergenic	COMPLEX_TANDUP	3.4	0.13	precise	0	NHEJ
2	bp2	D106R31	somatic_tumour	2L	1444311	intergenic	intergenic	2L	1440862	intergenic	intergenic	COMPLEX_TANDUP	3.4	0.13	precise	0	NHEJ
2	bp1	D106R31	somatic_tumour	2L	1440908	intergenic	intergenic	2L	1444311	intergenic	intergenic	COMPLEX_BND	3.4	0.05	precise	0	NHEJ
2	bp2	D106R31	somatic_tumour	2L	1444311	intergenic	intergenic	2L	1440908	intergenic	intergenic	COMPLEX_BND	3.4	0.05	precise	0	NHEJ
10	bp1	D106R31	somatic_tumour	3L	157613	p130CAS	intron	3L	158064	CR43151	exon_1	DEL	0.5	0.09	precise	0	-
10	bp2	D106R31	somatic_tumour	3L	158064	CR43151	exon_1	3L	157613	p130CAS	intron	DEL	0.5	0.09	precise	0	-
11	bp1	D106R31	somatic_tumour	3L	3818450	intergenic	intergenic	3L	3819947	enc	intron	DEL	1.5	0.1	precise	0	-
11	bp2	D106R31	somatic_tumour	3L	3819947	enc	intron	3L	3818450	intergenic	intergenic	DEL	1.5	0.1	precise	0	-
13	bp1	D106R31	somatic_tumour	3R	8801755	Tcp-1eta	intron	3R	8801863	Tcp-1eta	exon_2	DEL	0.1	0.14	precise	0	NHEJ
13	bp2	D106R31	somatic_tumour	3R	8801863	Tcp-1eta	exon_2	3R	8801755	Tcp-1eta	intron	DEL	0.1	0.14	precise	0	NHEJ
17	bp1	D106R31	somatic_tumour	3R	28621620	CG10011	intron	3R	28624106	CG10011	intron	DEL	2.5	0.02	precise	0	-
17	bp2	D106R31	somatic_tumour	3R	28624106	CG10011	intron	3R	28621620	CG10011	intron	DEL	2.5	0.02	precise	0	-
18	bp1	D106R31	somatic_tumour	X	3121806	kirre	intron	X	3145610	N	intron	BND	23.8	0.12	precise	0	-
18	bp2	D106R31	somatic_tumour	X	3145610	N	intron	X	3121806	kirre	intron	BND	23.8	0.12	precise	0	-
20	bp1	D106R31	somatic_tumour	Y	498296	kl-3	intron	Y	500174	kl-3	intron	DEL	1.9	0.84	imprecise	0	-
20	bp2	D106R31	somatic_tumour	Y	500174	kl-3	intron	Y	498296	kl-3	intron	DEL	1.9	0.84	imprecise	0	-
7	bp1	D106R33	somatic_tumour	2L	21257798	Hr39	exon	2L	21260456	intergenic	intergenic	DUP	2.7	0.42	imprecise	0	-
7	bp2	D106R33	somatic_tumour	2L	21260456	intergenic	intergenic	2L	21257798	Hr39	exon	DUP	2.7	0.42	imprecise	0	-
8	bp1	D106R33	somatic_tumour	2L	21304756	Mondo	intron	2L	21307414	Mondo	intron	DUP	2.7	0.42	imprecise	0	-
8	bp2	D106R33	somatic_tumour	2L	21307414	Mondo	intron	2L	21304756	Mondo	intron	DUP	2.7	0.42	imprecise	0	-
9	bp1	D106R33	somatic_tumour	2L	21390698	nrv3	3UTR	2L	21393356	intergenic	intergenic	DUP	2.7	0.46	imprecise	0	-
9	bp2	D106R33	somatic_tumour	2L	21393356	intergenic	intergenic	2L	21390698	nrv3	3UTR	DUP	2.7	0.46	imprecise	0	-
16	bp1	D106R33	somatic_tumour	2R	8396835	CG2121	exon_5	2R	8406450	CG2121	intron	DEL	9.6	0.11	precise	0	-
16	bp2	D106R33	somatic_tumour	2R	8406450	CG2121	intron	2R	8396835	CG2121	exon_5	DEL	9.6	0.11	precise	0	-
20	bp1	D106R33	somatic_tumour	3L	8937082	CG43783	intron	3L	8941512	orb2	3UTR	DUP	4.4	0.39	imprecise	0	-
20	bp2	D106R33	somatic_tumour	3L	8941512	orb2	3UTR	3L	8937082	CG43783	intron	DUP	4.4	0.39	imprecise	0	-
23	bp1	D106R33	somatic_tumour	3R	10985943	CG34114	intron	3R	19145997	Ppcs	intron	BND	8160.1	0.15	precise	0	-
23	bp2	D106R33	somatic_tumour	3R	19145997	Ppcs	intron	3R	10985943	CG34114	intron	BND	8160.1	0.15	precise	0	-
24	bp1	D106R33	somatic_tumour	3R	13797050	intergenic	intergenic	3R	20999372	Calx	intron	BND	7202.3	0.08	precise	0	-
24	bp2	D106R33	somatic_tumour	3R	20999372	Calx	intron	3R	13797050	intergenic	intergenic	BND	7202.3	0.08	precise	0	-
25	bp1	D106R33	somatic_tumour	3R	15301220	Tm1	intron	3R	15304764	Tm1	3UTR	DUP	3.5	0.38	imprecise	0	-
25	bp2	D106R33	somatic_tumour	3R	15304764	Tm1	3UTR	3R	15301220	Tm1	intron	DUP	3.5	0.38	imprecise	0	-
30	bp1	D106R33	somatic_tumour	3R	24064646	4EHP	3UTR	3R	24067304	4EHP	3UTR	DUP	2.7	0.5	imprecise	0	-
30	bp2	D106R33	somatic_tumour	3R	24067304	4EHP	3UTR	3R	24064646	4EHP	3UTR	DUP	2.7	0.5	imprecise	0	-
31	bp1	D106R33	somatic_tumour	3R	25084432	fd96Ca	exon	3R	25087976	intergenic	intergenic	DUP	3.5	0.41	imprecise	0	-
31	bp2	D106R33	somatic_tumour	3R	25087976	intergenic	intergenic	3R	25084432	fd96Ca	exon	DUP	3.5	0.41	imprecise	0	-
31	bp1	D106R33	somatic_tumour	3R	25134934	Bili	intron	3R	25137592	intergenic	intergenic	DUP	2.7	0.45	imprecise	0	-
31	bp2	D106R33	somatic_tumour	3R	25137592	intergenic	intergenic	3R	25134934	Bili	intron	DUP	2.7	0.45	imprecise	0	-
38	bp1	D106R33	somatic_tumour	4	110750	pan	3UTR	4	114294	intergenic	intergenic	DUP	3.5	0.47	imprecise	0	-
38	bp2	D106R33	somatic_tumour	4	114294	intergenic	intergenic	4	110750	pan	3UTR	DUP	3.5	0.47	imprecise	0	-
40	bp1	D106R33	somatic_tumour	4	239220	CG1674	intron	4	242764	CG1674	intron	DUP	3.5	0.44	imprecise	0	-
40	bp2	D106R33	somatic_tumour	4	242764	CG1674	intron	4	239220	CG1674	intron	DUP	3.5	0.44	imprecise	0	-
44	bp1	D106R33	somatic_tumour	4	484642	Asator	intron	4	487300	Asator	intron	DUP	2.7	0.48	imprecise	0	-
44	bp2	D106R33	somatic_tumour	4	487300	Asator	intron	4	484642	Asator	intron	DUP	2.7	0.48	imprecise	0	-
44	bp1	D106R33	somatic_tumour	4	878912	unc-13	exon_9	4	881570	CR44029	exon_1	DUP	2.7	0.46	imprecise	0	-
44	bp2	D106R33	somatic_tumour	4	881570	CR44029	exon_1	4	878912	unc-13	exon_9	DUP	2.7	0.46	imprecise	0	-
47	bp1	D106R33	somatic_tumour	4	1034848	ATPsynbeta	3UTR	4	1065858	apolpp	exon_3	DUP	31.0	0.32	imprecise	0	-
47	bp2	D106R33	somatic_tumour	4	1065858	apolpp	exon_3	4	1034848	ATPsynbeta	3UTR	DUP	31.0	0.32	imprecise	0	-
47	bp1	D106R33	somatic_tumour	4	1195214	PIP4K	intron	4	1199644	Mitf	intron	DUP	4.4	0.47	imprecise	0	-
47	bp2	D106R33	somatic_tumour	4	1199644	Mitf	intron	4	1195214	PIP4K	intron	DUP	4.4	0.47	imprecise	0	-
50	bp1	D106R33	somatic_tumour	X	3143402	N	intron	X	3150528	N	intron	DEL	7.1	0.24	precise	0	-
50	bp2	D106R33	somatic_tumour	X	3150528	N	intron	X	3143402	N	intron	DEL	7.1	0.24	precise	0	-
51	bp1	D106R33	somatic_tumour	X	15495519	Gmap	intron	X	15496834	Gmap	intron	DEL	1.3	0.21	precise	0	-
51	bp2	D106R33	somatic_tumour	X	15496834	Gmap	intron	X	15495519	Gmap	intron	DEL	1.3	0.21	precise	0	-
4	bp1	D106R3	somatic_tumour	2L	9879541	nAChRalpha6	intron	2L	11236361	ab	exon_5	BND	1356.8	0.05	precise	TGTTGTTGTTGTTGTT	Alt-EJ
4	bp2	D106R3	somatic_tumour	2L	11236361	ab	exon_5	2L	9879541	nAChRalpha6	intron	BND	1356.8	0.05	precise	TGTTGTTGTTGTTGTT	Alt-EJ
5	bp1	D106R3	somatic_tumour	2L	11347915	intergenic	intergenic	2L	11348073	intergenic	intergenic	TANDUP	0.2	0.24	precise	0	NHEJ
5	bp2	D106R3	somatic_tumour	2L	11348073	intergenic	intergenic	2L	11347915	intergenic	intergenic	TANDUP	0.2	0.24	precise	0	NHEJ
7	bp1	D106R3	somatic_tumour	2L	16897868	tweek	exon_8	2L	16904445	tweek	intron	DEL	6.6	0.32	precise	0	NHEJ
7	bp2	D106R3	somatic_tumour	2L	16904445	tweek	intron	2L	16897868	tweek	exon_8	DEL	6.6	0.32	precise	0	NHEJ
8	bp1	D106R3	somatic_tumour	2R	9599307	CG1902	intron	2R	9600112	CG30340	exon	DEL	0.8	0.56	precise	0	NHEJ
8	bp2	D106R3	somatic_tumour	2R	9600112	CG30340	exon	2R	9599307	CG1902	intron	DEL	0.8	0.56	precise	0	NHEJ
9	bp1	D106R3	somatic_tumour	2R	14995760	intergenic	intergenic	2L	8422318	Akap200	intron	TRA	6573.4	0.15	precise	0	NHEJ
9	bp2	D106R3	somatic_tumour	2L	8422318	Akap200	intron	2R	14995760	intergenic	intergenic	TRA	6573.4	0.15	precise	0	NHEJ
14	bp1	D106R3	somatic_tumour	3L	13710637	bru3	intron	3L	13710841	bru3	intron	DEL	0.2	0.22	precise	A	Alt-EJ
14	bp2	D106R3	somatic_tumour	3L	13710841	bru3	intron	3L	13710637	bru3	intron	DEL	0.2	0.22	precise	A	Alt-EJ
16	bp1	D106R3	somatic_tumour	3R	5736314	CG2100	5UTR	3R	5737069	CG1236	exon	DEL	0.8	0.62	precise	0	NHEJ
16	bp2	D106R3	somatic_tumour	3R	5737069	CG1236	exon	3R	5736314	CG2100	5UTR	DEL	0.8	0.62	precise	0	NHEJ
17	bp1	D106R3	somatic_tumour	3R	13812118	intergenic	intergenic	3R	13813511	tal-3A	5UTR	DEL	1.4	0.4	precise	0	NHEJ
17	bp2	D106R3	somatic_tumour	3R	13813511	tal-3A	5UTR	3R	13812118	intergenic	intergenic	DEL	1.4	0.4	precise	0	NHEJ
5	bp1	D106R5	somatic_tumour	2L	19852051	sick	intron	2L	19856905	sick	intron	DUP	4.9	0.41	imprecise	0	-
5	bp2	D106R5	somatic_tumour	2L	19856905	sick	intron	2L	19852051	sick	intron	DUP	4.9	0.41	imprecise	0	-
6	bp1	D106R5	somatic_tumour	2R	8044696	intergenic	intergenic	2R	8053595	CG12769	3UTR	DUP	8.9	0.37	imprecise	0	-
6	bp2	D106R5	somatic_tumour	2R	8053595	CG12769	3UTR	2R	8044696	intergenic	intergenic	DUP	8.9	0.37	imprecise	0	-
16	bp1	D106R5	somatic_tumour	3R	4164732	intergenic	intergenic	3R	4195474	CR33294	exon_4	DUP	30.7	0.44	imprecise	0	-
16	bp2	D106R5	somatic_tumour	3R	4195474	CR33294	exon_4	3R	4164732	intergenic	intergenic	DUP	30.7	0.44	imprecise	0	-
17	bp1	D106R5	somatic_tumour	3R	6352663	Pak	intron	3R	6353455	Pak	exon_1	DEL	0.8	0.09	precise	0	NHEJ
17	bp2	D106R5	somatic_tumour	3R	6353455	Pak	exon_1	3R	6352663	Pak	intron	DEL	0.8	0.09	precise	0	NHEJ
20	bp1	D106R5	somatic_tumour	3R	8914371	pyd	intron	3R	8940259	skap	intron	DUP	25.9	0.34	imprecise	0	-
20	bp2	D106R5	somatic_tumour	3R	8940259	skap	intron	3R	8914371	pyd	intron	DUP	25.9	0.34	imprecise	0	-
25	bp1	D106R5	somatic_tumour	3R	18879633	intergenic	intergenic	3R	18882060	intergenic	intergenic	DUP	2.4	0.45	imprecise	0	-
25	bp2	D106R5	somatic_tumour	3R	18882060	intergenic	intergenic	3R	18879633	intergenic	intergenic	DUP	2.4	0.45	imprecise	0	-
26	bp1	D106R5	somatic_tumour	4	355151	PMCA	exon_3	4	359196	intergenic	intergenic	DUP	4.0	0.45	imprecise	0	-
26	bp2	D106R5	somatic_tumour	4	359196	intergenic	intergenic	4	355151	PMCA	exon_3	DUP	4.0	0.45	imprecise	0	-
27	bp1	D106R5	somatic_tumour	4	423916	intergenic	intergenic	4	432006	intergenic	intergenic	DUP	8.1	0.43	imprecise	0	-
27	bp2	D106R5	somatic_tumour	4	432006	intergenic	intergenic	4	423916	intergenic	intergenic	DUP	8.1	0.43	imprecise	0	-
30	bp1	D106R5	somatic_tumour	4	1003160	toy	intron	4	1009632	intergenic	intergenic	DUP	6.5	0.44	imprecise	0	-
30	bp2	D106R5	somatic_tumour	4	1009632	intergenic	intergenic	4	1003160	toy	intron	DUP	6.5	0.44	imprecise	0	-
31	bp1	D106R5	somatic_tumour	4	1062217	apolpp	intron	4	1066262	apolpp	exon_4	DUP	4.0	0.46	imprecise	0	-
31	bp2	D106R5	somatic_tumour	4	1066262	apolpp	exon_4	4	1062217	apolpp	intron	DUP	4.0	0.46	imprecise	0	-
32	bp1	D106R5	somatic_tumour	4	1242624	Cadps	intron	4	1245051	Cadps	intron	DUP	2.4	0.46	imprecise	0	-
32	bp2	D106R5	somatic_tumour	4	1245051	Cadps	intron	4	1242624	Cadps	intron	DUP	2.4	0.46	imprecise	0	-
36	bp1	D106R5	somatic_tumour	X	7081986	Sxl	intron	X	7088458	Sxl	intron	DUP	6.5	0.37	imprecise	0	-
36	bp2	D106R5	somatic_tumour	X	7088458	Sxl	intron	X	7081986	Sxl	intron	DUP	6.5	0.37	imprecise	0	-
37	bp1	D106R5	somatic_tumour	X	10334166	CG43740	intron	X	10339829	CG43740	intron	DUP	5.7	0.4	imprecise	0	-
37	bp2	D106R5	somatic_tumour	X	10339829	CG43740	intron	X	10334166	CG43740	intron	DUP	5.7	0.4	imprecise	0	-
38	bp1	D106R5	somatic_tumour	X	10706306	X11Lbeta	intron	X	10711160	intergenic	intergenic	DUP	4.9	0.37	imprecise	0	-
38	bp2	D106R5	somatic_tumour	X	10711160	intergenic	intergenic	X	10706306	X11Lbeta	intron	DUP	4.9	0.37	imprecise	0	-
42	bp1	D106R5	somatic_tumour	X	17040776	CG45002	intron	X	17043203	CG45002	intron	DUP	2.4	0.49	imprecise	0	-
42	bp2	D106R5	somatic_tumour	X	17043203	CG45002	intron	X	17040776	CG45002	intron	DUP	2.4	0.49	imprecise	0	-
43	bp1	D106R5	somatic_tumour	X	17723572	CG42684	intron	X	17727617	CG42684	intron	DUP	4.0	0.48	imprecise	0	-
43	bp2	D106R5	somatic_tumour	X	17727617	CG42684	intron	X	17723572	CG42684	intron	DUP	4.0	0.48	imprecise	0	-
45	bp1	D106R5	somatic_tumour	X	19043860	intergenic	intergenic	X	19050332	intergenic	intergenic	DUP	6.5	0.5	imprecise	0	-
45	bp2	D106R5	somatic_tumour	X	19050332	intergenic	intergenic	X	19043860	intergenic	intergenic	DUP	6.5	0.5	imprecise	0	-
2	bp1	D106R7	somatic_tumour	2L	11557238	intergenic	intergenic	2L	11593890	kek2	intron	DUP	36.7	0.3	imprecise	0	-
2	bp2	D106R7	somatic_tumour	2L	11593890	kek2	intron	2L	11557238	intergenic	intergenic	DUP	36.7	0.3	imprecise	0	-
3	bp1	D106R7	somatic_tumour	2L	11851532	Mal-B2	exon_2	2L	11856922	Pde1c	intron	DEL	5.4	0.45	imprecise	0	-
3	bp2	D106R7	somatic_tumour	2L	11856922	Pde1c	intron	2L	11851532	Mal-B2	exon_2	DEL	5.4	0.45	imprecise	0	-
4	bp1	D106R7	somatic_tumour	2L	15039622	Su(H)	5UTR	2R	6222315	bin3	intron	TRA	8817.3	0.3	precise	0	NHEJ
4	bp2	D106R7	somatic_tumour	2R	6222315	bin3	intron	2L	15039622	Su(H)	5UTR	TRA	8817.3	0.3	precise	0	NHEJ
5	bp1	D106R7	somatic_tumour	2L	21300202	Mondo	intron	2L	21358414	intergenic	intergenic	DUP	58.2	0.16	imprecise	0	-
5	bp2	D106R7	somatic_tumour	2L	21358414	intergenic	intergenic	2L	21300202	Mondo	intron	DUP	58.2	0.16	imprecise	0	-
12	bp1	D106R7	somatic_tumour	2R	18238682	intergenic	intergenic	2R	18245150	intergenic	intergenic	DUP	6.5	0.34	imprecise	0	-
12	bp2	D106R7	somatic_tumour	2R	18245150	intergenic	intergenic	2R	18238682	intergenic	intergenic	DUP	6.5	0.34	imprecise	0	-
13	bp1	D106R7	somatic_tumour	2R	19452510	CG7744	5UTR	2R	19461134	par-1	intron	DUP	8.6	0.32	imprecise	0	-
13	bp2	D106R7	somatic_tumour	2R	19461134	par-1	intron	2R	19452510	CG7744	5UTR	DUP	8.6	0.32	imprecise	0	-
17	bp1	D106R7	somatic_tumour	3L	6701362	SP1173	intron	3L	6701401	SP1173	intron	DEL	0.0	0.35	precise	0	NHEJ
17	bp2	D106R7	somatic_tumour	3L	6701401	SP1173	intron	3L	6701362	SP1173	intron	DEL	0.0	0.35	precise	0	NHEJ
23	bp1	D106R7	somatic_tumour	3L	16154908	CG5151	intron	3L	16159220	CG5151	intron	DUP	4.3	0.42	imprecise	0	-
23	bp2	D106R7	somatic_tumour	3L	16159220	CG5151	intron	3L	16154908	CG5151	intron	DUP	4.3	0.42	imprecise	0	-
24	bp1	D106R7	somatic_tumour	3L	17032291	CR45756	exon_1	3L	17032333	CR45756	exon_1	DEL	0.0	0.25	precise	0	NHEJ
24	bp2	D106R7	somatic_tumour	3L	17032333	CR45756	exon_1	3L	17032291	CR45756	exon_1	DEL	0.0	0.25	precise	0	NHEJ
25	bp1	D106R7	somatic_tumour	3L	18265550	intergenic	intergenic	3L	18266427	intergenic	intergenic	DEL	0.9	0.32	precise	AA	Alt-EJ
25	bp2	D106R7	somatic_tumour	3L	18266427	intergenic	intergenic	3L	18265550	intergenic	intergenic	DEL	0.9	0.32	precise	AA	Alt-EJ
1	bp1	D106R9	somatic_tumour	2L	4123965	Sr-CI	3UTR	2L	4124094	Sr-CI	3UTR	DEL	0.1	0.32	precise	0	NHEJ
1	bp2	D106R9	somatic_tumour	2L	4124094	Sr-CI	3UTR	2L	4123965	Sr-CI	3UTR	DEL	0.1	0.32	precise	0	NHEJ
2	bp1	D106R9	somatic_tumour	2L	5299264	vri	intron	2L	5318112	Ncoa6	exon_5	DUP	18.8	0.39	imprecise	0	-
2	bp2	D106R9	somatic_tumour	2L	5318112	Ncoa6	exon_5	2L	5299264	vri	intron	DUP	18.8	0.39	imprecise	0	-
4	bp1	D106R9	somatic_tumour	2L	8166144	Piezo	intron	2L	8236576	Pvr	intron	DUP	70.4	0.16	imprecise	0	-
4	bp2	D106R9	somatic_tumour	2L	8236576	Pvr	intron	2L	8166144	Piezo	intron	DUP	70.4	0.16	imprecise	0	-
5	bp1	D106R9	somatic_tumour	2L	10477504	RluA-2	exon_2	2L	10493376	Myo31DF	exon_8	DUP	15.9	0.32	imprecise	0	-
5	bp2	D106R9	somatic_tumour	2L	10493376	Myo31DF	exon_8	2L	10477504	RluA-2	exon_2	DUP	15.9	0.32	imprecise	0	-
10	bp1	D106R9	somatic_tumour	2L	15242080	ZnT35C	intron	2L	15257952	yuri	exon_11	DUP	15.9	0.34	imprecise	0	-
10	bp2	D106R9	somatic_tumour	2L	15257952	yuri	exon_11	2L	15242080	ZnT35C	intron	DUP	15.9	0.34	imprecise	0	-
15	bp1	D106R9	somatic_tumour	2L	17088192	CG12620	exon	2L	17114976	intergenic	intergenic	DUP	26.8	0.08	imprecise	0	-
15	bp2	D106R9	somatic_tumour	2L	17114976	intergenic	intergenic	2L	17088192	CG12620	exon	DUP	26.8	0.08	imprecise	0	-
16	bp1	D106R9	somatic_tumour	2L	17114976	intergenic	intergenic	2L	17154656	CG34106	intron	DEL	39.7	0.31	imprecise	0	-
16	bp2	D106R9	somatic_tumour	2L	17154656	CG34106	intron	2L	17114976	intergenic	intergenic	DEL	39.7	0.31	imprecise	0	-
22	bp1	D106R9	somatic_tumour	2R	19894560	intergenic	intergenic	2R	19911424	CR44573	exon_1	DUP	16.9	0.36	imprecise	0	-
22	bp2	D106R9	somatic_tumour	2R	19911424	CR44573	exon_1	2R	19894560	intergenic	intergenic	DUP	16.9	0.36	imprecise	0	-
23	bp1	D106R9	somatic_tumour	2R	21040110	intergenic	intergenic	X	17507089	CG43658	exon_1	TRA	3533.0	0.13	precise	0	NHEJ
23	bp2	D106R9	somatic_tumour	X	17507089	CG43658	exon_1	2R	21040110	intergenic	intergenic	TRA	3533.0	0.13	precise	0	NHEJ
25	bp1	D106R9	somatic_tumour	2R	22627520	CG33143	intron	2R	22662240	CG42566	intron	DUP	34.7	0.32	imprecise	0	-
25	bp2	D106R9	somatic_tumour	2R	22662240	CG42566	intron	2R	22627520	CG33143	intron	DUP	34.7	0.32	imprecise	0	-
28	bp1	D106R9	somatic_tumour	3L	68448	Lsp1gamma	exon	3L	72416	CR43988	exon_2	DUP	4.0	0.5	imprecise	0	-
28	bp2	D106R9	somatic_tumour	3L	72416	CR43988	exon_2	3L	68448	Lsp1gamma	exon	DUP	4.0	0.5	imprecise	0	-
36	bp1	D106R9	somatic_tumour	3L	12594292	ara	exon_4	3L	12594408	ara	exon_4	TANDUP	0.1	0.23	precise	0	NHEJ
36	bp2	D106R9	somatic_tumour	3L	12594408	ara	exon_4	3L	12594292	ara	exon_4	TANDUP	0.1	0.23	precise	0	NHEJ
42	bp1	D106R9	somatic_tumour	3L	24566880	intergenic	intergenic	3L	24573824	intergenic	intergenic	DUP	6.9	0.36	imprecise	0	-
42	bp2	D106R9	somatic_tumour	3L	24573824	intergenic	intergenic	3L	24566880	intergenic	intergenic	DUP	6.9	0.36	imprecise	0	-
43	bp1	D106R9	somatic_tumour	3R	4132672	Gfat1	intron	3R	4173344	intergenic	intergenic	DEL	40.7	0.32	imprecise	0	-
43	bp2	D106R9	somatic_tumour	3R	4173344	intergenic	intergenic	3R	4132672	Gfat1	intron	DEL	40.7	0.32	imprecise	0	-
48	bp1	D106R9	somatic_tumour	3R	7472736	CG1142	exon	3R	7486624	alpha-Est10	3UTR	DUP	13.9	0.36	imprecise	0	-
48	bp2	D106R9	somatic_tumour	3R	7486624	alpha-Est10	3UTR	3R	7472736	CG1142	exon	DUP	13.9	0.36	imprecise	0	-
56	bp1	D106R9	somatic_tumour	3R	20892512	intergenic	intergenic	3R	20906400	CG5621	exon_8	DUP	13.9	0.36	imprecise	0	-
56	bp2	D106R9	somatic_tumour	3R	20906400	CG5621	exon_8	3R	20892512	intergenic	intergenic	DUP	13.9	0.36	imprecise	0	-
60	bp1	D106R9	somatic_tumour	3R	27123619	CG6059	exon_2	3R	27175379	Ser	intron	TANDUP	51.8	0.09	precise	0	NHEJ
60	bp2	D106R9	somatic_tumour	3R	27175379	Ser	intron	3R	27123619	CG6059	exon_2	TANDUP	51.8	0.09	precise	0	NHEJ
63	bp1	D106R9	somatic_tumour	3R	28990208	intergenic	intergenic	3R	29014016	wat	intron	DUP	23.8	0.28	imprecise	0	-
63	bp2	D106R9	somatic_tumour	3R	29014016	wat	intron	3R	28990208	intergenic	intergenic	DUP	23.8	0.28	imprecise	0	-
67	bp1	D106R9	somatic_tumour	3R	31034720	intergenic	intergenic	3R	31055552	dco	3UTR	DUP	20.8	0.3	imprecise	0	-
67	bp2	D106R9	somatic_tumour	3R	31055552	dco	3UTR	3R	31034720	intergenic	intergenic	DUP	20.8	0.3	imprecise	0	-
70	bp1	D106R9	somatic_tumour	4	42656	PlexB	intron	4	46624	intergenic	intergenic	DUP	4.0	0.42	imprecise	0	-
70	bp2	D106R9	somatic_tumour	4	46624	intergenic	intergenic	4	42656	PlexB	intron	DUP	4.0	0.42	imprecise	0	-
74	bp1	D106R9	somatic_tumour	4	461280	bip2	intron	4	487072	Asator	intron	DUP	25.8	0.33	imprecise	0	-
74	bp2	D106R9	somatic_tumour	4	487072	Asator	intron	4	461280	bip2	intron	DUP	25.8	0.33	imprecise	0	-
83	bp1	D106R9	somatic_tumour	X	10596544	CG2124	exon_1	X	10626304	CG9806	exon_2	DUP	29.8	0.26	imprecise	0	-
83	bp2	D106R9	somatic_tumour	X	10626304	CG9806	exon_2	X	10596544	CG2124	exon_1	DUP	29.8	0.26	imprecise	0	-
16	bp1	D197R01	somatic_tumour	2R	6268113	intergenic	intergenic	3L	24250729	Snap25	intron	TRA	17982.6	0.03	precise	0	-
16	bp2	D197R01	somatic_tumour	3L	24250729	Snap25	intron	2R	6268113	intergenic	intergenic	TRA	17982.6	0.03	precise	0	-
33	bp1	D197R01	somatic_tumour	3L	11288160	CG6175	3UTR	3L	11291376	CG6175	intron	DUP	3.2	0.37	imprecise	0	-
33	bp2	D197R01	somatic_tumour	3L	11291376	CG6175	intron	3L	11288160	CG6175	3UTR	DUP	3.2	0.37	imprecise	0	-
34	bp1	D197R01	somatic_tumour	3L	11879024	CG44837	intron	2R	21463775	Sdc	intron	TRA	9584.8	0.08	precise	0	-
34	bp2	D197R01	somatic_tumour	2R	21463775	Sdc	intron	3L	11879024	CG44837	intron	TRA	9584.8	0.08	precise	0	-
39	bp1	D197R01	somatic_tumour	3R	1453632	Myo81F	intron	3R	1456044	Myo81F	intron	DUP	2.4	0.49	imprecise	0	-
39	bp2	D197R01	somatic_tumour	3R	1456044	Myo81F	intron	3R	1453632	Myo81F	intron	DUP	2.4	0.49	imprecise	0	-
55	bp1	D197R01	somatic_tumour	4	804	intergenic	intergenic	4	4824	JYalpha	exon_5	DUP	4.0	0.41	imprecise	0	-
55	bp2	D197R01	somatic_tumour	4	4824	JYalpha	exon_5	4	804	intergenic	intergenic	DUP	4.0	0.41	imprecise	0	-
60	bp1	D197R01	somatic_tumour	4	1192332	CG33521	intron	4	1195548	PIP4K	exon_6	DUP	3.2	0.4	imprecise	0	-
60	bp2	D197R01	somatic_tumour	4	1195548	PIP4K	exon_6	4	1192332	CG33521	intron	DUP	3.2	0.4	imprecise	0	-
63	bp1	D197R01	somatic_tumour	X	2785056	CG32795	exon_4	X	3337404	CR44886	ncRNA	DEL	552.3	0.61	imprecise	0	-
63	bp2	D197R01	somatic_tumour	X	3337404	CR44886	ncRNA	X	2785056	CG32795	exon_4	DEL	552.3	0.61	imprecise	0	-
63	bp1	D197R01	somatic_tumour	X	2785301	CG32795	intron	X	3336717	CR44886	ncRNA	DEL	551.4	0.21	precise	0	-
63	bp2	D197R01	somatic_tumour	X	3336717	CR44886	ncRNA	X	2785301	CG32795	intron	DEL	551.4	0.21	precise	0	-
65	bp1	D197R01	somatic_tumour	X	3134156	kirre	3UTR	X	3136185	N	intron	DEL	2.0	0.65	precise	0	-
65	bp2	D197R01	somatic_tumour	X	3136185	N	intron	X	3134156	kirre	3UTR	DEL	2.0	0.65	precise	0	-
5	bp1	D197R03	somatic_tumour	2L	19170263	brat	exon	2L	19178260	brat	3UTR	DUP	8.0	0.31	imprecise	0	-
5	bp2	D197R03	somatic_tumour	2L	19178260	brat	3UTR	2L	19170263	brat	exon	DUP	8.0	0.31	imprecise	0	-
7	bp1	D197R03	germline_private	2R	3204767	intergenic	intergenic	2R	3283054	intergenic	intergenic	DUP	78.3	-	precise	0	-
7	bp2	D197R03	germline_private	2R	3283054	intergenic	intergenic	2R	3204767	intergenic	intergenic	DUP	78.3	-	precise	0	-
8	bp1	D197R03	somatic_tumour	2R	4562652	Stlk	intron	2R	4564833	Stlk	3UTR	DUP	2.2	0.4	imprecise	0	-
8	bp2	D197R03	somatic_tumour	2R	4564833	Stlk	3UTR	2R	4562652	Stlk	intron	DUP	2.2	0.4	imprecise	0	-
12	bp1	D197R03	somatic_tumour	2R	17699542	Uhg1	ncRNA	2R	17704631	CG6424	exon	DUP	5.1	0.29	imprecise	0	-
12	bp2	D197R03	somatic_tumour	2R	17704631	CG6424	exon	2R	17699542	Uhg1	ncRNA	DUP	5.1	0.29	imprecise	0	-
14	bp1	D197R03	somatic_tumour	3L	8937011	CG43783	intron	3L	8940646	orb2	3UTR	DUP	3.6	0.43	imprecise	0	-
14	bp2	D197R03	somatic_tumour	3L	8940646	orb2	3UTR	3L	8937011	CG43783	intron	DUP	3.6	0.43	imprecise	0	-
18	bp1	D197R03	somatic_tumour	3R	26275234	CG6154	3UTR	3R	26278869	intergenic	intergenic	DUP	3.6	0.33	imprecise	0	-
18	bp2	D197R03	somatic_tumour	3R	26278869	intergenic	intergenic	3R	26275234	CG6154	3UTR	DUP	3.6	0.33	imprecise	0	-
19	bp1	D197R03	somatic_tumour	3R	29320606	intergenic	intergenic	3R	29376068	intergenic	intergenic	DEL	55.5	0.23	precise	0	-
19	bp2	D197R03	somatic_tumour	3R	29376068	intergenic	intergenic	3R	29320606	intergenic	intergenic	DEL	55.5	0.23	precise	0	-
19	bp1	D197R03	somatic_tumour	3R	29320606	intergenic	intergenic	3R	29376079	intergenic	intergenic	DEL	55.5	0.17	precise	0	-
19	bp2	D197R03	somatic_tumour	3R	29376079	intergenic	intergenic	3R	29320606	intergenic	intergenic	DEL	55.5	0.17	precise	0	-
22	bp1	D197R03	somatic_tumour	4	109050	pan	3UTR	4	112685	pan	3UTR	DUP	3.6	0.43	imprecise	0	-
22	bp2	D197R03	somatic_tumour	4	112685	pan	3UTR	4	109050	pan	3UTR	DUP	3.6	0.43	imprecise	0	-
23	bp1	D197R03	somatic_tumour	4	337328	PMCA	intron	4	340236	PMCA	intron	DUP	2.9	0.41	imprecise	0	-
23	bp2	D197R03	somatic_tumour	4	340236	PMCA	intron	4	337328	PMCA	intron	DUP	2.9	0.41	imprecise	0	-
25	bp1	D197R03	somatic_tumour	4	565606	Pur-alpha	exon	4	567787	intergenic	intergenic	DUP	2.2	0.43	imprecise	0	-
25	bp2	D197R03	somatic_tumour	4	567787	intergenic	intergenic	4	565606	Pur-alpha	exon	DUP	2.2	0.43	imprecise	0	-
28	bp1	D197R03	somatic_tumour	4	687015	CG11360	3UTR	4	697920	ey	intron	DUP	10.9	0.35	imprecise	0	-
28	bp2	D197R03	somatic_tumour	4	697920	ey	intron	4	687015	CG11360	3UTR	DUP	10.9	0.35	imprecise	0	-
33	bp1	D197R03	somatic_tumour	X	3090477	kirre	intron	X	3154453	N	intron	DEL	64.0	0.72	imprecise	0	-
33	bp2	D197R03	somatic_tumour	X	3154453	N	intron	X	3090477	kirre	intron	DEL	64.0	0.72	imprecise	0	-
2	bp1	D197R05	somatic_tumour	2L	17782723	intergenic	intergenic	2L	17782826	intergenic	intergenic	BND	0.1	0.7	precise	0	-
2	bp2	D197R05	somatic_tumour	2L	17782826	intergenic	intergenic	2L	17782723	intergenic	intergenic	BND	0.1	0.7	precise	0	-
6	bp1	D197R05	somatic_tumour	2R	11730762	intergenic	intergenic	X	3353629	intergenic	intergenic	TRA	8377.1	0.32	precise	0	-
6	bp2	D197R05	somatic_tumour	X	3353629	intergenic	intergenic	2R	11730762	intergenic	intergenic	TRA	8377.1	0.32	precise	0	-
7	bp1	D197R05	somatic_normal	2R	12768397	intergenic	intergenic	2R	12768492	intergenic	intergenic	BND	0.1	0.083	precise	0	-
7	bp2	D197R05	somatic_normal	2R	12768492	intergenic	intergenic	2R	12768397	intergenic	intergenic	BND	0.1	0.083	precise	0	-
11	bp1	D197R05	somatic_tumour	3L	14292214	fz	intron	3L	14297176	fz	intron	DUP	5.0	0.41	imprecise	0	-
11	bp2	D197R05	somatic_tumour	3L	14297176	fz	intron	3L	14292214	fz	intron	DUP	5.0	0.41	imprecise	0	-
14	bp1	D197R05	germline_private	3L	18257813	intergenic	intergenic	3L	18258031	intergenic	intergenic	DEL	0.2	-	precise	0	-
14	bp2	D197R05	germline_private	3L	18258031	intergenic	intergenic	3L	18257813	intergenic	intergenic	DEL	0.2	-	precise	0	-
16	bp1	D197R05	somatic_tumour	3L	19588322	CG9330	exon_6	3L	19590803	ash1	3UTR	DUP	2.5	0.39	imprecise	0	-
16	bp2	D197R05	somatic_tumour	3L	19590803	ash1	3UTR	3L	19588322	CG9330	exon_6	DUP	2.5	0.39	imprecise	0	-
17	bp1	D197R05	germline_private	3L	28110227	intergenic	intergenic	211000022278951	196	intergenic	intergenic	TRA	28110.0	-	precise	0	-
17	bp2	D197R05	germline_private	211000022278951	196	intergenic	intergenic	3L	28110227	intergenic	intergenic	TRA	28110.0	-	precise	0	-
18	bp1	D197R05	germline_private	3R	4634949	intergenic	intergenic	3R	4636707	intergenic	intergenic	DUP	1.8	-	precise	0	-
18	bp2	D197R05	germline_private	3R	4636707	intergenic	intergenic	3R	4634949	intergenic	intergenic	DUP	1.8	-	precise	0	-
19	bp1	D197R05	somatic_tumour	3R	14095060	CCHa1	intron	3R	14095577	CCHa1	intron	DEL	0.5	0.29	precise	0	-
19	bp2	D197R05	somatic_tumour	3R	14095577	CCHa1	intron	3R	14095060	CCHa1	intron	DEL	0.5	0.29	precise	0	-
20	bp1	D197R05	somatic_tumour	4	176978	intergenic	intergenic	4	181113	intergenic	intergenic	DUP	4.1	0.41	imprecise	0	-
20	bp2	D197R05	somatic_tumour	4	181113	intergenic	intergenic	4	176978	intergenic	intergenic	DUP	4.1	0.41	imprecise	0	-
22	bp1	D197R05	somatic_tumour	4	625212	mav	exon_1	4	632655	Gat	exon_5	DUP	7.4	0.37	imprecise	0	-
22	bp2	D197R05	somatic_tumour	4	632655	Gat	exon_5	4	625212	mav	exon_1	DUP	7.4	0.37	imprecise	0	-
5	bp1	D197R07	somatic_tumour	2R	14517488	intergenic	intergenic	2R	14518749	intergenic	intergenic	DEL	1.3	0.16	precise	0	-
5	bp2	D197R07	somatic_tumour	2R	14518749	intergenic	intergenic	2R	14517488	intergenic	intergenic	DEL	1.3	0.16	precise	0	-
9	bp1	D197R07	somatic_tumour	3R	15596258	intergenic	intergenic	3R	15598916	intergenic	intergenic	DUP	2.7	0.41	imprecise	0	-
9	bp2	D197R07	somatic_tumour	3R	15598916	intergenic	intergenic	3R	15596258	intergenic	intergenic	DUP	2.7	0.41	imprecise	0	-
12	bp1	D197R07	somatic_tumour	X	3158590	N	intron	X	3162134	N	intron	DEL	3.5	0.98	imprecise	0	-
12	bp2	D197R07	somatic_tumour	X	3162134	N	intron	X	3158590	N	intron	DEL	3.5	0.98	imprecise	0	-
12	bp1	D197R07	somatic_tumour	X	3158734	N	intron	X	3161854	N	intron	DEL	3.1	0.59	precise	0	-
12	bp2	D197R07	somatic_tumour	X	3161854	N	intron	X	3158734	N	intron	DEL	3.1	0.59	precise	0	-
4	bp1	D197R09	somatic_tumour	2L	18881522	intergenic	intergenic	2L	18882130	intergenic	intergenic	BND	0.6	0.09	precise	12	-
4	bp2	D197R09	somatic_tumour	2L	18882130	intergenic	intergenic	2L	18881522	intergenic	intergenic	BND	0.6	0.09	precise	12	-
19	bp1	D197R09	somatic_tumour	2R	22638096	bonsai	intron	2R	22640202	intergenic	intergenic	DUP	2.1	0.43	imprecise	0	-
19	bp2	D197R09	somatic_tumour	2R	22640202	intergenic	intergenic	2R	22638096	bonsai	intron	DUP	2.1	0.43	imprecise	0	-
23	bp1	D197R09	somatic_tumour	3L	8450769	Gug	intron	3R	18640787	CG14301	5UTR	TRA	10190.0	0.04	precise	0	-
23	bp2	D197R09	somatic_tumour	3R	18640787	CG14301	5UTR	3L	8450769	Gug	intron	TRA	10190.0	0.04	precise	0	-
28	bp1	D197R09	somatic_tumour	3L	22574916	CG14459	3UTR	3L	22577022	CG14459	3UTR	DUP	2.1	0.4	imprecise	0	-
28	bp2	D197R09	somatic_tumour	3L	22577022	CG14459	3UTR	3L	22574916	CG14459	3UTR	DUP	2.1	0.4	imprecise	0	-
29	bp1	D197R09	somatic_normal	3L	22892904	slif	exon	3L	22893109	slif	exon	BND	0.2	0.089	precise	0	-
29	bp2	D197R09	somatic_normal	3L	22893109	slif	exon	3L	22892904	slif	exon	BND	0.2	0.089	precise	0	-
31	bp1	D197R09	germline_private	3L	25231705	intergenic	intergenic	3L	25231949	intergenic	intergenic	DEL	0.2	-	precise	0	-
31	bp2	D197R09	germline_private	3L	25231949	intergenic	intergenic	3L	25231705	intergenic	intergenic	DEL	0.2	-	precise	0	-
39	bp1	D197R09	somatic_tumour	X	0	intergenic	intergenic	X	8900658	intergenic	intergenic	DEL	8900.7	0.25	imprecise	0	-
39	bp2	D197R09	somatic_tumour	X	8900658	intergenic	intergenic	X	0	intergenic	intergenic	DEL	8900.7	0.25	imprecise	0	-
39	bp1	D197R09	somatic_tumour	X	8901360	intergenic	intergenic	X	14259726	intergenic	intergenic	DEL	5358.4	0.25	imprecise	0	-
39	bp2	D197R09	somatic_tumour	X	14259726	intergenic	intergenic	X	8901360	intergenic	intergenic	DEL	5358.4	0.25	imprecise	0	-
40	bp1	D197R09	somatic_tumour	X	3134963	N	5UTR	X	3138096	N	intron	DEL	3.1	0.44	precise	0	-
40	bp2	D197R09	somatic_tumour	X	3138096	N	intron	X	3134963	N	5UTR	DEL	3.1	0.44	precise	0	-
41	bp1	D197R09	somatic_tumour	X	3134963	N	5UTR	X	3138096	N	intron	DEL	3.1	0.44	precise	0	-
41	bp2	D197R09	somatic_tumour	X	3138096	N	intron	X	3134963	N	5UTR	DEL	3.1	0.44	precise	0	-
42	bp1	D197R09	somatic_normal	X	5159772	CG15465	intron	X	5159821	CG15465	intron	DEL	0.0	0.11	precise	0	-
42	bp2	D197R09	somatic_normal	X	5159821	CG15465	intron	X	5159772	CG15465	intron	DEL	0.0	0.11	precise	0	-
44	bp1	D197R09	somatic_tumour	X	14332734	dpr8	intron	X	19298682	intergenic	intergenic	DEL	4965.9	0.25	imprecise	0	-
44	bp2	D197R09	somatic_tumour	X	19298682	intergenic	intergenic	X	14332734	dpr8	intron	DEL	4965.9	0.25	imprecise	0	-
1	bp1	D197R11	somatic_tumour	2L	7031883	Rab30	exon	2L	7035395	Caper	exon_3	DEL	3.5	0.21	precise	0	-
1	bp2	D197R11	somatic_tumour	2L	7035395	Caper	exon_3	2L	7031883	Rab30	exon	DEL	3.5	0.21	precise	0	-
2	bp1	D197R11	somatic_tumour	2L	7891081	intergenic	intergenic	2L	7893490	Snoo	3UTR	DUP	2.4	0.46	imprecise	0	-
2	bp2	D197R11	somatic_tumour	2L	7893490	Snoo	3UTR	2L	7891081	intergenic	intergenic	DUP	2.4	0.46	imprecise	0	-
3	bp1	D197R11	somatic_normal	2L	9831533	nAChRalpha6	intron	2L	9831544	nAChRalpha6	intron	DEL	0.0	0.12	precise	0	-
3	bp2	D197R11	somatic_normal	2L	9831544	nAChRalpha6	intron	2L	9831533	nAChRalpha6	intron	DEL	0.0	0.12	precise	0	-
12	bp1	D197R11	germline_private	2R	10024018	Pka-R2	intron	X	3453221	CR44999	ncRNA	TRA	6570.8	-	precise	0	-
12	bp2	D197R11	germline_private	X	3453221	CR44999	ncRNA	2R	10024018	Pka-R2	intron	TRA	6570.8	-	precise	0	-
20	bp1	D197R11	somatic_tumour	3L	20755141	CG33912	intron	3L	20759959	intergenic	intergenic	DUP	4.8	0.39	imprecise	0	-
20	bp2	D197R11	somatic_tumour	3L	20759959	intergenic	intergenic	3L	20755141	CG33912	intron	DUP	4.8	0.39	imprecise	0	-
23	bp1	D197R11	somatic_tumour	3R	19312953	Dl	intron	3R	19351497	intergenic	intergenic	DUP	38.5	0.34	imprecise	0	-
23	bp2	D197R11	somatic_tumour	3R	19351497	intergenic	intergenic	3R	19312953	Dl	intron	DUP	38.5	0.34	imprecise	0	-
23	bp1	D197R11	somatic_tumour	3R	19313455	Dl	intron	3R	19351709	intergenic	intergenic	TANDUP	38.3	0.09	precise	0	-
23	bp2	D197R11	somatic_tumour	3R	19351709	intergenic	intergenic	3R	19313455	Dl	intron	TANDUP	38.3	0.09	precise	0	-
30	bp1	D197R11	somatic_tumour	X	2470028	boi	exon_1	X	2472437	trol	intron	DUP	2.4	0.46	imprecise	0	-
30	bp2	D197R11	somatic_tumour	X	2472437	trol	intron	X	2470028	boi	exon_1	DUP	2.4	0.46	imprecise	0	-
31	bp1	D197R11	somatic_tumour	X	3786948	Tlk	3UTR	X	3789357	Tlk	3UTR	DUP	2.4	0.43	imprecise	0	-
31	bp2	D197R11	somatic_tumour	X	3789357	Tlk	3UTR	X	3786948	Tlk	3UTR	DUP	2.4	0.43	imprecise	0	-
34	bp1	D197R11	somatic_tumour	X	11218713	intergenic	intergenic	X	11223531	CG44422	3UTR	DUP	4.8	0.4	imprecise	0	-
34	bp2	D197R11	somatic_tumour	X	11223531	CG44422	3UTR	X	11218713	intergenic	intergenic	DUP	4.8	0.4	imprecise	0	-
1	bp1	D197R13	somatic_tumour	2L	17732736	CadN	intron	2L	17853024	CadN2	intron	DEL	120.3	0.43	imprecise	0	-
1	bp2	D197R13	somatic_tumour	2L	17853024	CadN2	intron	2L	17732736	CadN	intron	DEL	120.3	0.43	imprecise	0	-
1	bp1	D197R15	somatic_tumour	2L	167291	spen	intron	2L	179862	spen	intron	DUP	12.6	0.39	imprecise	0	-
1	bp2	D197R15	somatic_tumour	2L	179862	spen	intron	2L	167291	spen	intron	DUP	12.6	0.39	imprecise	0	-
2	bp1	D197R15	somatic_tumour	2L	549264	Ets21C	5UTR	2L	549415	Ets21C	5UTR	COMPLEX_BND	0.2	0.09	precise	0	-
2	bp2	D197R15	somatic_tumour	2L	549415	Ets21C	5UTR	2L	549264	Ets21C	5UTR	COMPLEX_BND	0.2	0.09	precise	0	-
7	bp1	D197R15	somatic_tumour	2L	1413914	robo2	intron	2L	1414397	robo2	intron	BND	0.5	0.15	precise	0	-
7	bp2	D197R15	somatic_tumour	2L	1414397	robo2	intron	2L	1413914	robo2	intron	BND	0.5	0.15	precise	0	-
8	bp1	D197R15	germline_private	2L	2013726	CG4238	intron	2L	2014948	CG4238	intron	INV	1.2	-	precise	0	-
8	bp2	D197R15	germline_private	2L	2014948	CG4238	intron	2L	2013726	CG4238	intron	INV	1.2	-	precise	0	-
9	bp1	D197R15	somatic_tumour	2L	2024251	CG4238	exon_1	2L	2024519	CG4238	intron	BND	0.3	0.13	precise	0	-
9	bp2	D197R15	somatic_tumour	2L	2024519	CG4238	intron	2L	2024251	CG4238	exon_1	BND	0.3	0.13	precise	0	-
10	bp1	D197R15	somatic_tumour	2L	2256800	intergenic	intergenic	2L	2257556	intergenic	intergenic	BND	0.8	0.08	precise	0	-
10	bp2	D197R15	somatic_tumour	2L	2257556	intergenic	intergenic	2L	2256800	intergenic	intergenic	BND	0.8	0.08	precise	0	-
12	bp1	D197R15	somatic_tumour	2L	2477454	intergenic	intergenic	2L	2503563	intergenic	intergenic	DEL	26.1	0.32	imprecise	0	-
12	bp2	D197R15	somatic_tumour	2L	2503563	intergenic	intergenic	2L	2477454	intergenic	intergenic	DEL	26.1	0.32	imprecise	0	-
13	bp1	D197R15	somatic_tumour	2L	2571711	Cyp309a2	exon_4	2L	2572030	Cyp309a2	exon_3	BND	0.3	0.1	precise	0	-
13	bp2	D197R15	somatic_tumour	2L	2572030	Cyp309a2	exon_3	2L	2571711	Cyp309a2	exon_4	BND	0.3	0.1	precise	0	-
14	bp1	D197R15	somatic_tumour	2L	3218942	intergenic	intergenic	2L	3219693	intergenic	intergenic	BND	0.7	0.07	precise	0	-
14	bp2	D197R15	somatic_tumour	2L	3219693	intergenic	intergenic	2L	3218942	intergenic	intergenic	BND	0.7	0.07	precise	0	-
15	bp1	D197R15	somatic_tumour	2L	3336000	E23	exon_8	2L	3336392	E23	exon_7	BND	0.4	0.09	precise	0	-
15	bp2	D197R15	somatic_tumour	2L	3336392	E23	exon_7	2L	3336000	E23	exon_8	BND	0.4	0.09	precise	0	-
16	bp1	D197R15	somatic_tumour	2L	3698775	CG10031	intron	2L	3704577	CG31778	exon	COMPLEX_DUP	5.8	0.41	imprecise	0	-
16	bp2	D197R15	somatic_tumour	2L	3704577	CG31778	exon	2L	3698775	CG10031	intron	COMPLEX_DUP	5.8	0.41	imprecise	0	-
18	bp1	D197R15	somatic_tumour	2L	4248314	CR44059	ncRNA	2L	4249542	CR44059	exon_1	BND	1.2	0.06	precise	0	-
18	bp2	D197R15	somatic_tumour	2L	4249542	CR44059	exon_1	2L	4248314	CR44059	ncRNA	BND	1.2	0.06	precise	0	-
19	bp1	D197R15	somatic_tumour	2L	4315223	tutl	3UTR	2L	4316182	tutl	intron	BND	1.0	0.13	precise	0	-
19	bp2	D197R15	somatic_tumour	2L	4316182	tutl	intron	2L	4315223	tutl	3UTR	BND	1.0	0.13	precise	0	-
21	bp1	D197R15	somatic_tumour	2L	6047302	CG34179	3UTR	2L	6047713	CG34179	3UTR	BND	0.4	0.24	precise	0	-
21	bp2	D197R15	somatic_tumour	2L	6047713	CG34179	3UTR	2L	6047302	CG34179	3UTR	BND	0.4	0.24	precise	0	-
24	bp1	D197R15	somatic_tumour	2L	7579881	intergenic	intergenic	2L	7581096	intergenic	intergenic	BND	1.2	0.14	precise	0	-
24	bp2	D197R15	somatic_tumour	2L	7581096	intergenic	intergenic	2L	7579881	intergenic	intergenic	BND	1.2	0.14	precise	0	-
25	bp1	D197R15	somatic_tumour	2L	7699435	Tep2	exon_2	2L	7699525	Tep2	exon_2	BND	0.1	0.22	precise	0	-
25	bp2	D197R15	somatic_tumour	2L	7699525	Tep2	exon_2	2L	7699435	Tep2	exon_2	BND	0.1	0.22	precise	0	-
28	bp1	D197R15	somatic_tumour	2L	8214816	CG8353	exon	2L	8214944	CG8353	exon	COMPLEX_BND	0.1	0.08	precise	0	-
28	bp2	D197R15	somatic_tumour	2L	8214944	CG8353	exon	2L	8214816	CG8353	exon	COMPLEX_BND	0.1	0.08	precise	0	-
30	bp1	D197R15	somatic_tumour	2L	8863980	CG32987	exon	2L	8864256	CG32987	exon	BND	0.3	0.12	precise	0	-
30	bp2	D197R15	somatic_tumour	2L	8864256	CG32987	exon	2L	8863980	CG32987	exon	BND	0.3	0.12	precise	0	-
33	bp1	D197R15	somatic_tumour	2L	9410259	Shawl	intron	2L	9410751	Shawl	intron	BND	0.5	0.13	precise	0	-
33	bp2	D197R15	somatic_tumour	2L	9410751	Shawl	intron	2L	9410259	Shawl	intron	BND	0.5	0.13	precise	0	-
34	bp1	D197R15	somatic_tumour	2L	10391382	da	exon	2L	10392143	da	exon	BND	0.8	0.09	precise	0	-
34	bp2	D197R15	somatic_tumour	2L	10392143	da	exon	2L	10391382	da	exon	BND	0.8	0.09	precise	0	-
36	bp1	D197R15	somatic_tumour	2L	10831472	Nos	exon_2	2L	10831749	Nos	exon_2	BND	0.3	0.07	precise	0	-
36	bp2	D197R15	somatic_tumour	2L	10831749	Nos	exon_2	2L	10831472	Nos	exon_2	BND	0.3	0.07	precise	0	-
39	bp1	D197R15	somatic_tumour	2L	11965766	CR43314	ncRNA	2L	11965906	CR43314	ncRNA	BND	0.1	0.11	precise	0	-
39	bp2	D197R15	somatic_tumour	2L	11965906	CR43314	ncRNA	2L	11965766	CR43314	ncRNA	BND	0.1	0.11	precise	0	-
40	bp1	D197R15	somatic_tumour	2L	12628272	Ref2	intron	2L	12628372	Ref2	intron	BND	0.1	0.17	precise	0	-
40	bp2	D197R15	somatic_tumour	2L	12628372	Ref2	intron	2L	12628272	Ref2	intron	BND	0.1	0.17	precise	0	-
41	bp1	D197R15	germline_private	2L	13964532	NimB1	intron	2L	13968821	NimB4	exon	INV	4.3	-	precise	0	-
41	bp2	D197R15	germline_private	2L	13968821	NimB4	exon	2L	13964532	NimB1	intron	INV	4.3	-	precise	0	-
43	bp1	D197R15	germline_private	2L	16638281	CG42389	intron	2L	16639537	CG42389	intron	INV	1.3	-	precise	0	-
43	bp2	D197R15	germline_private	2L	16639537	CG42389	intron	2L	16638281	CG42389	intron	INV	1.3	-	precise	0	-
45	bp1	D197R15	somatic_tumour	2L	16944336	intergenic	intergenic	2L	16944648	intergenic	intergenic	BND	0.3	0.09	precise	0	-
45	bp2	D197R15	somatic_tumour	2L	16944648	intergenic	intergenic	2L	16944336	intergenic	intergenic	BND	0.3	0.09	precise	0	-
47	bp1	D197R15	somatic_tumour	2L	17356683	intergenic	intergenic	2L	17379891	Lrch	intron	DUP	23.2	0.36	imprecise	0	-
47	bp2	D197R15	somatic_tumour	2L	17379891	Lrch	intron	2L	17356683	intergenic	intergenic	DUP	23.2	0.36	imprecise	0	-
48	bp1	D197R15	somatic_tumour	2L	17606169	intergenic	intergenic	2L	17866292	CadN2	intron	DEL	260.1	0.33	imprecise	0	-
48	bp2	D197R15	somatic_tumour	2L	17866292	CadN2	intron	2L	17606169	intergenic	intergenic	DEL	260.1	0.33	imprecise	0	-
51	bp1	D197R15	somatic_tumour	2L	21388106	nrv3	intron	2L	21394875	intergenic	intergenic	DUP	6.8	0.45	imprecise	0	-
51	bp2	D197R15	somatic_tumour	2L	21394875	intergenic	intergenic	2L	21388106	nrv3	intron	DUP	6.8	0.45	imprecise	0	-
54	bp1	D197R15	somatic_tumour	2L	21734292	intergenic	intergenic	2L	21745896	step	intron	DUP	11.6	0.41	imprecise	0	-
54	bp2	D197R15	somatic_tumour	2L	21745896	step	intron	2L	21734292	intergenic	intergenic	DUP	11.6	0.41	imprecise	0	-
60	bp1	D197R15	somatic_tumour	2R	1488346	intergenic	intergenic	2R	1488763	intergenic	intergenic	BND	0.4	0.14	precise	0	-
60	bp2	D197R15	somatic_tumour	2R	1488763	intergenic	intergenic	2R	1488346	intergenic	intergenic	BND	0.4	0.14	precise	0	-
61	bp1	D197R15	somatic_tumour	2R	1600672	intergenic	intergenic	2R	1600805	intergenic	intergenic	BND	0.1	0.15	precise	0	-
61	bp2	D197R15	somatic_tumour	2R	1600805	intergenic	intergenic	2R	1600672	intergenic	intergenic	BND	0.1	0.15	precise	0	-
62	bp1	D197R15	somatic_tumour	2R	2961921	Scp1	intron	2R	2968690	intergenic	intergenic	DUP	6.8	0.44	imprecise	0	-
62	bp2	D197R15	somatic_tumour	2R	2968690	intergenic	intergenic	2R	2961921	Scp1	intron	DUP	6.8	0.44	imprecise	0	-
63	bp1	D197R15	somatic_tumour	2R	4271241	intergenic	intergenic	2R	4271346	intergenic	intergenic	BND	0.1	0.08	precise	0	-
63	bp2	D197R15	somatic_tumour	2R	4271346	intergenic	intergenic	2R	4271241	intergenic	intergenic	BND	0.1	0.08	precise	0	-
64	bp1	D197R15	somatic_tumour	2R	5274310	d4	intron	2R	5275353	d4	intron	BND	1.0	0.15	precise	0	-
64	bp2	D197R15	somatic_tumour	2R	5275353	d4	intron	2R	5274310	d4	intron	BND	1.0	0.15	precise	0	-
65	bp1	D197R15	somatic_tumour	2R	5490535	CG30440	intron	2R	5492604	CG30440	intron	COMPLEX_BND	2.1	0.16	precise	0	-
65	bp2	D197R15	somatic_tumour	2R	5492604	CG30440	intron	2R	5490535	CG30440	intron	COMPLEX_BND	2.1	0.16	precise	0	-
65	bp1	D197R15	somatic_tumour	2R	5490778	CG30440	intron	2R	5492331	CG30440	intron	COMPLEX_BND	1.6	0.15	precise	0	-
65	bp2	D197R15	somatic_tumour	2R	5492331	CG30440	intron	2R	5490778	CG30440	intron	COMPLEX_BND	1.6	0.15	precise	0	-
66	bp1	D197R15	somatic_tumour	2R	6193843	Ptr	intron	2R	6194872	Ptr	intron	BND	1.0	0.07	precise	0	-
66	bp2	D197R15	somatic_tumour	2R	6194872	Ptr	intron	2R	6193843	Ptr	intron	BND	1.0	0.07	precise	0	-
67	bp1	D197R15	somatic_tumour	2R	6243325	Pld	intron	2R	6243889	Pld	intron	BND	0.6	0.08	precise	0	-
67	bp2	D197R15	somatic_tumour	2R	6243889	Pld	intron	2R	6243325	Pld	intron	BND	0.6	0.08	precise	0	-
72	bp1	D197R15	somatic_tumour	2R	8915347	lin	exon	2R	8916970	lin	exon	BND	1.6	0.07	precise	0	-
72	bp2	D197R15	somatic_tumour	2R	8916970	lin	exon	2R	8915347	lin	exon	BND	1.6	0.07	precise	0	-
74	bp1	D197R15	somatic_tumour	2R	9550136	intergenic	intergenic	2R	9550359	intergenic	intergenic	BND	0.2	0.24	precise	0	-
74	bp2	D197R15	somatic_tumour	2R	9550359	intergenic	intergenic	2R	9550136	intergenic	intergenic	BND	0.2	0.24	precise	0	-
76	bp1	D197R15	somatic_tumour	2R	10598320	psq	intron	2R	10603155	psq	intron	DUP	4.8	0.43	imprecise	0	-
76	bp2	D197R15	somatic_tumour	2R	10603155	psq	intron	2R	10598320	psq	intron	DUP	4.8	0.43	imprecise	0	-
77	bp1	D197R15	somatic_tumour	2R	10852474	CG30015	intron	2R	10853698	CR45136	exon_2	BND	1.2	0.1	precise	0	-
77	bp2	D197R15	somatic_tumour	2R	10853698	CR45136	exon_2	2R	10852474	CG30015	intron	BND	1.2	0.1	precise	0	-
80	bp1	D197R15	somatic_tumour	2R	11630109	CG9005	intron	2R	11639779	CG9005	intron	DUP	9.7	0.4	imprecise	0	-
80	bp2	D197R15	somatic_tumour	2R	11639779	CG9005	intron	2R	11630109	CG9005	intron	DUP	9.7	0.4	imprecise	0	-
81	bp1	D197R15	somatic_tumour	2R	12187449	Cyp6g1	exon_3	2R	12189388	Cyp6g2	exon_1	BND	1.9	0.1	precise	0	-
81	bp2	D197R15	somatic_tumour	2R	12189388	Cyp6g2	exon_1	2R	12187449	Cyp6g1	exon_3	BND	1.9	0.1	precise	0	-
82	bp1	D197R15	germline_private	2R	12634231	CG33671	3UTR	2R	12635506	CG33671	5UTR	INV	1.3	-	precise	0	-
82	bp2	D197R15	germline_private	2R	12635506	CG33671	5UTR	2R	12634231	CG33671	3UTR	INV	1.3	-	precise	0	-
83	bp1	D197R15	somatic_tumour	2R	12660274	nemy	exon	2R	12660461	nemy	exon_5	BND	0.2	0.14	precise	0	-
83	bp2	D197R15	somatic_tumour	2R	12660461	nemy	exon_5	2R	12660274	nemy	exon	BND	0.2	0.14	precise	0	-
84	bp1	D197R15	somatic_tumour	2R	12907895	intergenic	intergenic	2R	12908027	intergenic	intergenic	BND	0.1	0.09	precise	0	-
84	bp2	D197R15	somatic_tumour	2R	12908027	intergenic	intergenic	2R	12907895	intergenic	intergenic	BND	0.1	0.09	precise	0	-
85	bp1	D197R15	somatic_tumour	2R	14463708	Oaz	exon	2R	14464434	Oaz	exon	BND	0.7	0.08	precise	0	-
85	bp2	D197R15	somatic_tumour	2R	14464434	Oaz	exon	2R	14463708	Oaz	exon	BND	0.7	0.08	precise	0	-
86	bp1	D197R15	somatic_tumour	2R	15092784	intergenic	intergenic	2R	15093140	intergenic	intergenic	BND	0.4	0.13	precise	0	-
86	bp2	D197R15	somatic_tumour	2R	15093140	intergenic	intergenic	2R	15092784	intergenic	intergenic	BND	0.4	0.13	precise	0	-
88	bp1	D197R15	somatic_tumour	2R	15965634	Strn-Mlck	intron	2R	15966362	Strn-Mlck	exon_2	BND	0.7	0.1	precise	0	-
88	bp2	D197R15	somatic_tumour	2R	15966362	Strn-Mlck	exon_2	2R	15965634	Strn-Mlck	intron	BND	0.7	0.1	precise	0	-
89	bp1	D197R15	somatic_tumour	2R	17553011	MESR4	exon	2R	17553847	MESR4	exon	DEL	0.8	0.06	precise	0	-
89	bp2	D197R15	somatic_tumour	2R	17553847	MESR4	exon	2R	17553011	MESR4	exon	DEL	0.8	0.06	precise	0	-
92	bp1	D197R15	somatic_tumour	2R	18328041	sbb	intron	2R	18328238	sbb	intron	BND	0.2	0.24	precise	0	-
92	bp2	D197R15	somatic_tumour	2R	18328238	sbb	intron	2R	18328041	sbb	intron	BND	0.2	0.24	precise	0	-
95	bp1	D197R15	somatic_tumour	2R	20228882	intergenic	intergenic	2R	20229088	intergenic	intergenic	BND	0.2	0.17	precise	0	-
95	bp2	D197R15	somatic_tumour	2R	20229088	intergenic	intergenic	2R	20228882	intergenic	intergenic	BND	0.2	0.17	precise	0	-
96	bp1	D197R15	somatic_tumour	2R	20873278	Ipk1	intron	2R	20875550	Ipk1	intron	BND	2.3	0.13	precise	0	-
96	bp2	D197R15	somatic_tumour	2R	20875550	Ipk1	intron	2R	20873278	Ipk1	intron	BND	2.3	0.13	precise	0	-
98	bp1	D197R15	somatic_tumour	2R	21560352	twz	3UTR	2R	21560442	twz	3UTR	BND	0.1	0.15	precise	0	-
98	bp2	D197R15	somatic_tumour	2R	21560442	twz	3UTR	2R	21560352	twz	3UTR	BND	0.1	0.15	precise	0	-
100	bp1	D197R15	somatic_tumour	2R	23483159	CG43795	intron	2R	23484070	CG43795	exon_8	BND	0.9	0.07	precise	0	-
100	bp2	D197R15	somatic_tumour	2R	23484070	CG43795	exon_8	2R	23483159	CG43795	intron	BND	0.9	0.07	precise	0	-
102	bp1	D197R15	somatic_tumour	2R	23854825	bgcn	exon_3	2R	23855110	bgcn	exon_3	BND	0.3	0.06	precise	0	-
102	bp2	D197R15	somatic_tumour	2R	23855110	bgcn	exon_3	2R	23854825	bgcn	exon_3	BND	0.3	0.06	precise	0	-
105	bp1	D197R15	germline_private	3L	1403970	Ptp61F	intron	3L	1408093	Ptp61F	intron	INV	4.1	-	precise	0	-
105	bp2	D197R15	germline_private	3L	1408093	Ptp61F	intron	3L	1403970	Ptp61F	intron	INV	4.1	-	precise	0	-
106	bp1	D197R15	somatic_tumour	3L	1736654	CG18173	exon	3L	1736845	CG18173	exon	BND	0.2	0.12	precise	0	-
106	bp2	D197R15	somatic_tumour	3L	1736845	CG18173	exon	3L	1736654	CG18173	exon	BND	0.2	0.12	precise	0	-
107	bp1	D197R15	somatic_tumour	3L	3208457	CG32270	exon	3L	3208583	CG32270	exon	BND	0.1	0.2	precise	0	-
107	bp2	D197R15	somatic_tumour	3L	3208583	CG32270	exon	3L	3208457	CG32270	exon	BND	0.1	0.2	precise	0	-
110	bp1	D197R15	somatic_tumour	3L	3904259	Sc2	exon_2	3L	3904537	Sc2	exon_3	BND	0.3	0.16	precise	0	-
110	bp2	D197R15	somatic_tumour	3L	3904537	Sc2	exon_3	3L	3904259	Sc2	exon_2	BND	0.3	0.16	precise	0	-
111	bp1	D197R15	somatic_tumour	3L	4155466	nab	exon_3	3L	4155647	nab	exon_3	BND	0.2	0.11	precise	0	-
111	bp2	D197R15	somatic_tumour	3L	4155647	nab	exon_3	3L	4155466	nab	exon_3	BND	0.2	0.11	precise	0	-
112	bp1	D197R15	somatic_tumour	3L	4190574	tipE	5UTR	3L	4191076	tipE	exon_2	BND	0.5	0.1	precise	0	-
112	bp2	D197R15	somatic_tumour	3L	4191076	tipE	exon_2	3L	4190574	tipE	5UTR	BND	0.5	0.1	precise	0	-
114	bp1	D197R15	somatic_tumour	3L	5593455	CG10592	exon_2	3L	5596622	CG5150	exon	BND	3.2	0.06	precise	0	-
114	bp2	D197R15	somatic_tumour	3L	5596622	CG5150	exon	3L	5593455	CG10592	exon_2	BND	3.2	0.06	precise	0	-
115	bp1	D197R15	somatic_tumour	3L	5665471	sif	exon_2	3L	5665679	sif	exon_2	BND	0.2	0.19	precise	0	-
115	bp2	D197R15	somatic_tumour	3L	5665679	sif	exon_2	3L	5665471	sif	exon_2	BND	0.2	0.19	precise	0	-
121	bp1	D197R15	somatic_tumour	3L	7568560	frac	exon_6	3L	7568797	frac	exon_6	BND	0.2	0.13	precise	0	-
121	bp2	D197R15	somatic_tumour	3L	7568797	frac	exon_6	3L	7568560	frac	exon_6	BND	0.2	0.13	precise	0	-
122	bp1	D197R15	somatic_tumour	3L	8224734	intergenic	intergenic	3L	8225051	intergenic	intergenic	BND	0.3	0.16	precise	0	-
122	bp2	D197R15	somatic_tumour	3L	8225051	intergenic	intergenic	3L	8224734	intergenic	intergenic	BND	0.3	0.16	precise	0	-
124	bp1	D197R15	somatic_tumour	3L	9104999	bol	intron	3L	9106706	bol	3UTR	BND	1.7	0.09	precise	0	-
124	bp2	D197R15	somatic_tumour	3L	9106706	bol	3UTR	3L	9104999	bol	intron	BND	1.7	0.09	precise	0	-
126	bp1	D197R15	somatic_tumour	3L	12028513	rols	intron	3L	12039150	rols	intron	DUP	10.6	0.41	imprecise	0	-
126	bp2	D197R15	somatic_tumour	3L	12039150	rols	intron	3L	12028513	rols	intron	DUP	10.6	0.41	imprecise	0	-
127	bp1	D197R15	somatic_tumour	3L	12804993	Atg1	5UTR	3L	12806057	Sap130	intron	BND	1.1	0.03	precise	0	-
127	bp2	D197R15	somatic_tumour	3L	12806057	Sap130	intron	3L	12804993	Atg1	5UTR	BND	1.1	0.03	precise	0	-
128	bp1	D197R15	somatic_tumour	3L	12897319	intergenic	intergenic	3L	12897910	intergenic	intergenic	BND	0.6	0.08	precise	0	-
128	bp2	D197R15	somatic_tumour	3L	12897910	intergenic	intergenic	3L	12897319	intergenic	intergenic	BND	0.6	0.08	precise	0	-
129	bp1	D197R15	germline_private	3L	13065926	intergenic	intergenic	3L	13066069	intergenic	intergenic	INV	0.1	-	precise	0	-
129	bp2	D197R15	germline_private	3L	13066069	intergenic	intergenic	3L	13065926	intergenic	intergenic	INV	0.1	-	precise	0	-
131	bp1	D197R15	somatic_tumour	3L	13378183	CG14111	intron	3L	13379055	SNCF	exon	COMPLEX_BND	0.9	0.11	precise	18	-
131	bp2	D197R15	somatic_tumour	3L	13379055	SNCF	exon	3L	13378183	CG14111	intron	COMPLEX_BND	0.9	0.11	precise	18	-
131	bp1	D197R15	somatic_tumour	3L	13378197	CG14111	intron	3L	13379055	SNCF	exon	COMPLEX_BND	0.9	0.11	precise	0	-
131	bp2	D197R15	somatic_tumour	3L	13379055	SNCF	exon	3L	13378197	CG14111	intron	COMPLEX_BND	0.9	0.11	precise	0	-
135	bp1	D197R15	somatic_tumour	3L	15645363	comm3	intron	3L	15646112	comm3	intron	BND	0.7	0.13	precise	0	-
135	bp2	D197R15	somatic_tumour	3L	15646112	comm3	intron	3L	15645363	comm3	intron	BND	0.7	0.13	precise	0	-
137	bp1	D197R15	somatic_tumour	3L	17556560	CycT	exon_1	3L	17556814	CycT	exon_1	BND	0.3	0.14	precise	0	-
137	bp2	D197R15	somatic_tumour	3L	17556814	CycT	exon_1	3L	17556560	CycT	exon_1	BND	0.3	0.14	precise	0	-
138	bp1	D197R15	somatic_tumour	3L	18749163	Atg3	intron	3L	18769470	ftz-f1	intron	DUP	20.3	0.38	imprecise	0	-
138	bp2	D197R15	somatic_tumour	3L	18769470	ftz-f1	intron	3L	18749163	Atg3	intron	DUP	20.3	0.38	imprecise	0	-
139	bp1	D197R15	somatic_tumour	3L	18918580	CG6839	exon	3L	18921195	CG3819	exon	COMPLEX_BND	2.6	0.06	precise	0	-
139	bp2	D197R15	somatic_tumour	3L	18921195	CG3819	exon	3L	18918580	CG6839	exon	COMPLEX_BND	2.6	0.06	precise	0	-
139	bp1	D197R15	somatic_tumour	3L	18918618	CG6839	exon	3L	18921161	CG3819	exon	COMPLEX_BND	2.5	0.07	precise	0	-
139	bp2	D197R15	somatic_tumour	3L	18921161	CG3819	exon	3L	18918618	CG6839	exon	COMPLEX_BND	2.5	0.07	precise	0	-
139	bp1	D197R15	somatic_tumour	3L	18919055	CG6839	exon	3L	18920718	CG3819	exon	COMPLEX_BND	1.7	0.07	precise	0	-
139	bp2	D197R15	somatic_tumour	3L	18920718	CG3819	exon	3L	18919055	CG6839	exon	COMPLEX_BND	1.7	0.07	precise	0	-
141	bp1	D197R15	somatic_tumour	3L	19628166	wnd	exon_4	3L	19638803	CG8786	3UTR	DUP	10.6	0.4	imprecise	0	-
141	bp2	D197R15	somatic_tumour	3L	19638803	CG8786	3UTR	3L	19628166	wnd	exon_4	DUP	10.6	0.4	imprecise	0	-
142	bp1	D197R15	germline_private	3L	19697113	intergenic	intergenic	3L	19698302	intergenic	intergenic	INV	1.2	-	precise	0	-
142	bp2	D197R15	germline_private	3L	19698302	intergenic	intergenic	3L	19697113	intergenic	intergenic	INV	1.2	-	precise	0	-
145	bp1	D197R15	somatic_tumour	3L	21069061	siz	exon_2	3L	21069158	siz	exon_2	BND	0.1	0.1	precise	0	-
145	bp2	D197R15	somatic_tumour	3L	21069158	siz	exon_2	3L	21069061	siz	exon_2	BND	0.1	0.1	precise	0	-
147	bp1	D197R15	germline_private	3L	22937021	intergenic	intergenic	3L	22938259	intergenic	intergenic	INV	1.2	-	precise	0	-
147	bp2	D197R15	germline_private	3L	22938259	intergenic	intergenic	3L	22937021	intergenic	intergenic	INV	1.2	-	precise	0	-
148	bp1	D197R15	somatic_tumour	3R	3752688	intergenic	intergenic	3R	3753111	intergenic	intergenic	BND	0.4	0.1	precise	0	-
148	bp2	D197R15	somatic_tumour	3R	3753111	intergenic	intergenic	3R	3752688	intergenic	intergenic	BND	0.4	0.1	precise	0	-
149	bp1	D197R15	somatic_tumour	3R	5242854	CG12163	intron	3R	5244165	CG12163	exon_2	BND	1.3	0.07	precise	0	-
149	bp2	D197R15	somatic_tumour	3R	5244165	CG12163	exon_2	3R	5242854	CG12163	intron	BND	1.3	0.07	precise	0	-
150	bp1	D197R15	somatic_tumour	3R	5779407	jagn	5UTR	3R	5779962	jagn	exon_2	BND	0.6	0.09	precise	8	-
150	bp2	D197R15	somatic_tumour	3R	5779962	jagn	exon_2	3R	5779407	jagn	5UTR	BND	0.6	0.09	precise	8	-
152	bp1	D197R15	somatic_tumour	3R	7141666	Fer1	exon	3R	7142462	intergenic	intergenic	BND	0.8	0.13	precise	0	-
152	bp2	D197R15	somatic_tumour	3R	7142462	intergenic	intergenic	3R	7141666	Fer1	exon	BND	0.8	0.13	precise	0	-
153	bp1	D197R15	germline_private	3R	8970939	intergenic	intergenic	3R	8972010	intergenic	intergenic	INV	1.1	-	precise	0	-
153	bp2	D197R15	germline_private	3R	8972010	intergenic	intergenic	3R	8970939	intergenic	intergenic	INV	1.1	-	precise	0	-
154	bp1	D197R15	somatic_tumour	3R	10395831	cwo	intron	3R	10396591	cwo	exon_2	BND	0.8	0.09	precise	0	-
154	bp2	D197R15	somatic_tumour	3R	10396591	cwo	exon_2	3R	10395831	cwo	intron	BND	0.8	0.09	precise	0	-
155	bp1	D197R15	somatic_tumour	3R	10432246	intergenic	intergenic	3R	10434075	intergenic	intergenic	BND	1.8	0.09	precise	0	-
155	bp2	D197R15	somatic_tumour	3R	10434075	intergenic	intergenic	3R	10432246	intergenic	intergenic	BND	1.8	0.09	precise	0	-
156	bp1	D197R15	germline_private	3R	10533694	hth	intron	3R	10535200	hth	intron	INV	1.5	-	precise	0	-
156	bp2	D197R15	germline_private	3R	10535200	hth	intron	3R	10533694	hth	intron	INV	1.5	-	precise	0	-
157	bp1	D197R15	somatic_tumour	3R	11333110	pros	exon_1	3R	11333421	pros	exon_1	BND	0.3	0.07	precise	0	-
157	bp2	D197R15	somatic_tumour	3R	11333421	pros	exon_1	3R	11333110	pros	exon_1	BND	0.3	0.07	precise	0	-
158	bp1	D197R15	somatic_tumour	3R	11449890	CG17230	intron	3R	11449986	CG17230	intron	BND	0.1	0.17	precise	0	-
158	bp2	D197R15	somatic_tumour	3R	11449986	CG17230	intron	3R	11449890	CG17230	intron	BND	0.1	0.17	precise	0	-
159	bp1	D197R15	somatic_tumour	3R	11782801	CG17360	exon_7	3R	11783222	CG17360	exon_6	BND	0.4	0.08	precise	0	-
159	bp2	D197R15	somatic_tumour	3R	11783222	CG17360	exon_6	3R	11782801	CG17360	exon_7	BND	0.4	0.08	precise	0	-
163	bp1	D197R15	somatic_tumour	3R	15160080	Gyc88E	intron	3R	15160254	Gyc88E	intron	BND	0.2	0.09	precise	0	-
163	bp2	D197R15	somatic_tumour	3R	15160254	Gyc88E	intron	3R	15160080	Gyc88E	intron	BND	0.2	0.09	precise	0	-
164	bp1	D197R15	somatic_tumour	3R	15426015	CG6118	intron	3R	15427459	CG6118	intron	BND	1.4	0.08	precise	0	-
164	bp2	D197R15	somatic_tumour	3R	15427459	CG6118	intron	3R	15426015	CG6118	intron	BND	1.4	0.08	precise	0	-
165	bp1	D197R15	germline_private	3R	16113646	intergenic	intergenic	X	6129146	Ca-alpha1T	intron	TRA	9984.5	-	precise	0	-
165	bp2	D197R15	germline_private	X	6129146	Ca-alpha1T	intron	3R	16113646	intergenic	intergenic	TRA	9984.5	-	precise	0	-
166	bp1	D197R15	somatic_tumour	3R	16433166	CG17565	exon_1	3R	16433758	CG17565	exon_3	BND	0.6	0.11	precise	0	-
166	bp2	D197R15	somatic_tumour	3R	16433758	CG17565	exon_3	3R	16433166	CG17565	exon_1	BND	0.6	0.11	precise	0	-
167	bp1	D197R15	somatic_tumour	3R	16703794	Ubx	intron	3R	16704163	Ubx	intron	BND	0.4	0.16	precise	12	-
167	bp2	D197R15	somatic_tumour	3R	16704163	Ubx	intron	3R	16703794	Ubx	intron	BND	0.4	0.16	precise	12	-
168	bp1	D197R15	somatic_tumour	3R	17019938	AdSL	exon	3R	17020060	AdSL	exon	BND	0.1	0.17	precise	0	-
168	bp2	D197R15	somatic_tumour	3R	17020060	AdSL	exon	3R	17019938	AdSL	exon	BND	0.1	0.17	precise	0	-
169	bp1	D197R15	somatic_tumour	3R	17342540	beat-IIa	intron	3R	17342647	beat-IIa	intron	BND	0.1	0.14	precise	0	-
169	bp2	D197R15	somatic_tumour	3R	17342647	beat-IIa	intron	3R	17342540	beat-IIa	intron	BND	0.1	0.14	precise	0	-
170	bp1	D197R15	somatic_tumour	3R	17408724	CG17283	exon	3R	17409853	CG5860	exon	BND	1.1	0.06	precise	0	-
170	bp2	D197R15	somatic_tumour	3R	17409853	CG5860	exon	3R	17408724	CG17283	exon	BND	1.1	0.06	precise	0	-
171	bp1	D197R15	somatic_tumour	3R	18941781	CG42613	intron	3R	18942643	CG42613	intron	BND	0.9	0.12	precise	0	-
171	bp2	D197R15	somatic_tumour	3R	18942643	CG42613	intron	3R	18941781	CG42613	intron	BND	0.9	0.12	precise	0	-
172	bp1	D197R15	somatic_tumour	3R	19311916	Dl	exon_4	3R	19322712	Dl	intron	DEL	10.8	0.12	precise	0	-
172	bp2	D197R15	somatic_tumour	3R	19322712	Dl	intron	3R	19311916	Dl	exon_4	DEL	10.8	0.12	precise	0	-
174	bp1	D197R15	somatic_tumour	3R	20030169	trem	exon_3	3R	20032526	CG4936	exon_2	BND	2.4	0.11	precise	0	-
174	bp2	D197R15	somatic_tumour	3R	20032526	CG4936	exon_2	3R	20030169	trem	exon_3	BND	2.4	0.11	precise	0	-
175	bp1	D197R15	somatic_tumour	3R	20138588	intergenic	intergenic	3R	20139419	CR42836	exon_3	BND	0.8	0.08	precise	0	-
175	bp2	D197R15	somatic_tumour	3R	20139419	CR42836	exon_3	3R	20138588	intergenic	intergenic	BND	0.8	0.08	precise	0	-
176	bp1	D197R15	somatic_tumour	3R	21311713	Hsromega	ncRNA	3R	21316548	Hsromega	ncRNA	DUP	4.8	0.47	imprecise	0	-
176	bp2	D197R15	somatic_tumour	3R	21316548	Hsromega	ncRNA	3R	21311713	Hsromega	ncRNA	DUP	4.8	0.47	imprecise	0	-
177	bp1	D197R15	somatic_tumour	3R	21723955	intergenic	intergenic	3R	21724876	intergenic	intergenic	BND	0.9	0.25	precise	0	-
177	bp2	D197R15	somatic_tumour	3R	21724876	intergenic	intergenic	3R	21723955	intergenic	intergenic	BND	0.9	0.25	precise	0	-
178	bp1	D197R15	somatic_tumour	3R	21917544	intergenic	intergenic	3R	21918395	intergenic	intergenic	BND	0.8	0.24	precise	0	-
178	bp2	D197R15	somatic_tumour	3R	21918395	intergenic	intergenic	3R	21917544	intergenic	intergenic	BND	0.8	0.24	precise	0	-
179	bp1	D197R15	somatic_tumour	3R	21963974	Eip93F	intron	3R	21964230	Eip93F	intron	BND	0.3	0.19	precise	0	-
179	bp2	D197R15	somatic_tumour	3R	21964230	Eip93F	intron	3R	21963974	Eip93F	intron	BND	0.3	0.19	precise	0	-
180	bp1	D197R15	somatic_tumour	3R	22552067	bond	intron	3R	22552211	bond	intron	BND	0.1	0.14	precise	0	-
180	bp2	D197R15	somatic_tumour	3R	22552211	bond	intron	3R	22552067	bond	intron	BND	0.1	0.14	precise	0	-
181	bp1	D197R15	somatic_tumour	3R	23049700	p53	3UTR	3R	23049827	p53	3UTR	BND	0.1	0.14	precise	0	-
181	bp2	D197R15	somatic_tumour	3R	23049827	p53	3UTR	3R	23049700	p53	3UTR	BND	0.1	0.14	precise	0	-
182	bp1	D197R15	somatic_tumour	3R	23546919	intergenic	intergenic	3R	23547214	intergenic	intergenic	BND	0.3	0.09	precise	0	-
182	bp2	D197R15	somatic_tumour	3R	23547214	intergenic	intergenic	3R	23546919	intergenic	intergenic	BND	0.3	0.09	precise	0	-
183	bp1	D197R15	somatic_tumour	3R	24323369	BRWD3	exon_9	3R	24323499	BRWD3	exon_9	BND	0.1	0.11	precise	0	-
183	bp2	D197R15	somatic_tumour	3R	24323499	BRWD3	exon_9	3R	24323369	BRWD3	exon_9	BND	0.1	0.11	precise	0	-
184	bp1	D197R15	germline_private	3R	24557215	snRNA:U6:96Ac	snRNA	2L	7872822	intergenic	intergenic	TRA	16684.4	-	precise	0	-
184	bp2	D197R15	germline_private	2L	7872822	intergenic	intergenic	3R	24557215	snRNA:U6:96Ac	snRNA	TRA	16684.4	-	precise	0	-
185	bp1	D197R15	somatic_tumour	3R	25766042	intergenic	intergenic	3R	25771670	intergenic	intergenic	BND	5.6	0.07	precise	0	-
185	bp2	D197R15	somatic_tumour	3R	25771670	intergenic	intergenic	3R	25766042	intergenic	intergenic	BND	5.6	0.07	precise	0	-
186	bp1	D197R15	somatic_tumour	3R	26017622	intergenic	intergenic	3R	26017758	intergenic	intergenic	BND	0.1	0.14	precise	0	-
186	bp2	D197R15	somatic_tumour	3R	26017758	intergenic	intergenic	3R	26017622	intergenic	intergenic	BND	0.1	0.14	precise	0	-
188	bp1	D197R15	somatic_tumour	3R	27660144	Mlc1	5UTR	3R	27660254	intergenic	intergenic	BND	0.1	0.18	precise	0	-
188	bp2	D197R15	somatic_tumour	3R	27660254	intergenic	intergenic	3R	27660144	Mlc1	5UTR	BND	0.1	0.18	precise	0	-
189	bp1	D197R15	somatic_tumour	3R	27895835	CG34353	intron	3R	27896045	CG34353	intron	BND	0.2	0.08	precise	0	-
189	bp2	D197R15	somatic_tumour	3R	27896045	CG34353	intron	3R	27895835	CG34353	intron	BND	0.2	0.08	precise	0	-
190	bp1	D197R15	somatic_tumour	3R	28082140	CG34362	intron	3R	28082378	CG34362	intron	BND	0.2	0.14	precise	0	-
190	bp2	D197R15	somatic_tumour	3R	28082378	CG34362	intron	3R	28082140	CG34362	intron	BND	0.2	0.14	precise	0	-
191	bp1	D197R15	somatic_tumour	3R	28456119	beat-VI	intron	3R	28456316	beat-VI	intron	BND	0.2	0.22	precise	0	-
191	bp2	D197R15	somatic_tumour	3R	28456316	beat-VI	intron	3R	28456119	beat-VI	intron	BND	0.2	0.22	precise	0	-
194	bp1	D197R15	germline_private	3R	29651785	Dop1R2	intron	3R	29653036	Dop1R2	intron	INV	1.3	-	precise	0	-
194	bp2	D197R15	germline_private	3R	29653036	Dop1R2	intron	3R	29651785	Dop1R2	intron	INV	1.3	-	precise	0	-
195	bp1	D197R15	somatic_tumour	3R	29779478	fig	exon	3R	29779766	fig	exon	BND	0.3	0.12	precise	0	-
195	bp2	D197R15	somatic_tumour	3R	29779766	fig	exon	3R	29779478	fig	exon	BND	0.3	0.12	precise	0	-
203	bp1	D197R15	somatic_tumour	4	58020	CR43957	ncRNA	4	60921	CR43957	exon_4	COMPLEX_DUP	2.9	0.49	imprecise	0	-
203	bp2	D197R15	somatic_tumour	4	60921	CR43957	exon_4	4	58020	CR43957	ncRNA	COMPLEX_DUP	2.9	0.49	imprecise	0	-
203	bp1	D197R15	somatic_tumour	4	312867	Zip102B	exon	4	313465	Zip102B	5UTR	COMPLEX_BND	0.6	0.07	precise	0	-
203	bp2	D197R15	somatic_tumour	4	313465	Zip102B	5UTR	4	312867	Zip102B	exon	COMPLEX_BND	0.6	0.07	precise	0	-
205	bp1	D197R15	somatic_tumour	4	148890	intergenic	intergenic	4	149022	intergenic	intergenic	BND	0.1	0.17	precise	0	-
205	bp2	D197R15	somatic_tumour	4	149022	intergenic	intergenic	4	148890	intergenic	intergenic	BND	0.1	0.17	precise	0	-
209	bp1	D197R15	somatic_tumour	4	417838	intergenic	intergenic	4	418140	intergenic	intergenic	BND	0.3	0.09	precise	0	-
209	bp2	D197R15	somatic_tumour	4	418140	intergenic	intergenic	4	417838	intergenic	intergenic	BND	0.3	0.09	precise	0	-
210	bp1	D197R15	germline_private	4	627592	intergenic	intergenic	4	627737	intergenic	intergenic	INV	0.1	-	precise	0	-
210	bp2	D197R15	germline_private	4	627737	intergenic	intergenic	4	627592	intergenic	intergenic	INV	0.1	-	precise	0	-
211	bp1	D197R15	somatic_tumour	4	959264	CR45201	ncRNA	4	1198113	intergenic	intergenic	DUP	238.8	0.34	imprecise	0	-
211	bp2	D197R15	somatic_tumour	4	1198113	intergenic	intergenic	4	959264	CR45201	ncRNA	DUP	238.8	0.34	imprecise	0	-
213	bp1	D197R15	somatic_tumour	4	1272513	intergenic	intergenic	4	1272786	intergenic	intergenic	BND	0.3	0.13	precise	0	-
213	bp2	D197R15	somatic_tumour	4	1272786	intergenic	intergenic	4	1272513	intergenic	intergenic	BND	0.3	0.13	precise	0	-
214	bp1	D197R15	somatic_tumour	X	149992	tyn	intron	X	151573	tyn	intron	BND	1.6	0.08	precise	0	-
214	bp2	D197R15	somatic_tumour	X	151573	tyn	intron	X	149992	tyn	intron	BND	1.6	0.08	precise	0	-
217	bp1	D197R15	somatic_tumour	X	1981653	Hr4	intron	X	1981826	Hr4	intron	BND	0.2	0.09	precise	0	-
217	bp2	D197R15	somatic_tumour	X	1981826	Hr4	intron	X	1981653	Hr4	intron	BND	0.2	0.09	precise	0	-
218	bp1	D197R15	somatic_tumour	X	2008974	CG4406	exon_1	X	2009152	CG4406	exon_1	BND	0.2	0.15	precise	0	-
218	bp2	D197R15	somatic_tumour	X	2009152	CG4406	exon_1	X	2008974	CG4406	exon_1	BND	0.2	0.15	precise	0	-
220	bp1	D197R15	somatic_tumour	X	2248058	crn	exon	X	2248189	crn	exon	BND	0.1	0.12	precise	0	-
220	bp2	D197R15	somatic_tumour	X	2248189	crn	exon	X	2248058	crn	exon	BND	0.1	0.12	precise	0	-
222	bp1	D197R15	somatic_tumour	X	2674722	sgg	exon_12	X	2679557	intergenic	intergenic	DUP	4.8	0.46	imprecise	0	-
222	bp2	D197R15	somatic_tumour	X	2679557	intergenic	intergenic	X	2674722	sgg	exon_12	DUP	4.8	0.46	imprecise	0	-
225	bp1	D197R15	somatic_tumour	X	2861532	kirre	intron	X	2861697	kirre	intron	BND	0.2	0.32	precise	0	-
225	bp2	D197R15	somatic_tumour	X	2861697	kirre	intron	X	2861532	kirre	intron	BND	0.2	0.32	precise	0	-
226	bp1	D197R15	somatic_tumour	X	3044909	kirre	intron	X	3045114	kirre	intron	BND	0.2	0.12	precise	0	-
226	bp2	D197R15	somatic_tumour	X	3045114	kirre	intron	X	3044909	kirre	intron	BND	0.2	0.12	precise	0	-
227	bp1	D197R15	somatic_tumour	X	3386434	CR44999	ncRNA	X	3401906	CG12535	intron	DUP	15.5	0.38	imprecise	0	-
227	bp2	D197R15	somatic_tumour	X	3401906	CG12535	intron	X	3386434	CR44999	ncRNA	DUP	15.5	0.38	imprecise	0	-
228	bp1	D197R15	somatic_tumour	X	3567478	ppk8	intron	X	3567532	ppk8	intron	BND	0.1	0.2	precise	0	-
228	bp2	D197R15	somatic_tumour	X	3567532	ppk8	intron	X	3567478	ppk8	intron	BND	0.1	0.2	precise	0	-
229	bp1	D197R15	somatic_tumour	X	3716906	Rala	intron	X	3718104	Rala	intron	BND	1.2	0.07	precise	0	-
229	bp2	D197R15	somatic_tumour	X	3718104	Rala	intron	X	3716906	Rala	intron	BND	1.2	0.07	precise	0	-
231	bp1	D197R15	somatic_tumour	X	4529319	CR32773	ncRNA	X	4530699	CG3556	intron	BND	1.4	0.12	precise	0	-
231	bp2	D197R15	somatic_tumour	X	4530699	CG3556	intron	X	4529319	CR32773	ncRNA	BND	1.4	0.12	precise	0	-
233	bp1	D197R15	somatic_tumour	X	4978698	CR44833	ncRNA	X	4979222	CR44833	ncRNA	BND	0.5	0.09	precise	0	-
233	bp2	D197R15	somatic_tumour	X	4979222	CR44833	ncRNA	X	4978698	CR44833	ncRNA	BND	0.5	0.09	precise	0	-
235	bp1	D197R15	somatic_tumour	X	5753053	CG15772	exon	X	5754490	lin-52	exon_3	BND	1.4	0.08	precise	0	-
235	bp2	D197R15	somatic_tumour	X	5754490	lin-52	exon_3	X	5753053	CG15772	exon	BND	1.4	0.08	precise	0	-
239	bp1	D197R15	somatic_tumour	X	7107165	fz4	3UTR	X	7107253	fz4	3UTR	BND	0.1	0.13	precise	0	-
239	bp2	D197R15	somatic_tumour	X	7107253	fz4	3UTR	X	7107165	fz4	3UTR	BND	0.1	0.13	precise	0	-
240	bp1	D197R15	somatic_tumour	X	7517397	CG32719	intron	X	7518052	CG32719	intron	BND	0.7	0.11	precise	0	-
240	bp2	D197R15	somatic_tumour	X	7518052	CG32719	intron	X	7517397	CG32719	intron	BND	0.7	0.11	precise	0	-
242	bp1	D197R15	somatic_tumour	X	7829534	CG1402	intron	X	7829672	CG1402	intron	BND	0.1	0.14	precise	0	-
242	bp2	D197R15	somatic_tumour	X	7829672	CG1402	intron	X	7829534	CG1402	intron	BND	0.1	0.14	precise	0	-
245	bp1	D197R15	germline_private	X	8421252	Trf2	intron	X	8422590	Trf2	intron	INV	1.3	-	precise	0	-
245	bp2	D197R15	germline_private	X	8422590	Trf2	intron	X	8421252	Trf2	intron	INV	1.3	-	precise	0	-
246	bp1	D197R15	somatic_tumour	X	8959998	rdgA	intron	X	8960895	rdgA	intron	BND	0.9	0.13	precise	0	-
246	bp2	D197R15	somatic_tumour	X	8960895	rdgA	intron	X	8959998	rdgA	intron	BND	0.9	0.13	precise	0	-
249	bp1	D197R15	somatic_tumour	X	9859111	intergenic	intergenic	X	9859244	intergenic	intergenic	BND	0.1	0.15	precise	0	-
249	bp2	D197R15	somatic_tumour	X	9859244	intergenic	intergenic	X	9859111	intergenic	intergenic	BND	0.1	0.15	precise	0	-
250	bp1	D197R15	somatic_tumour	X	10923232	CG43901	3UTR	X	10926133	intergenic	intergenic	DUP	2.9	0.42	imprecise	0	-
250	bp2	D197R15	somatic_tumour	X	10926133	intergenic	intergenic	X	10923232	CG43901	3UTR	DUP	2.9	0.42	imprecise	0	-
251	bp1	D197R15	somatic_tumour	X	11398996	dlg1	intron	X	11410600	CG15196	exon	DUP	11.6	0.47	imprecise	0	-
251	bp2	D197R15	somatic_tumour	X	11410600	CG15196	exon	X	11398996	dlg1	intron	DUP	11.6	0.47	imprecise	0	-
257	bp1	D197R15	somatic_tumour	X	12358674	intergenic	intergenic	X	12359176	intergenic	intergenic	BND	0.5	0.18	precise	0	-
257	bp2	D197R15	somatic_tumour	X	12359176	intergenic	intergenic	X	12358674	intergenic	intergenic	BND	0.5	0.18	precise	0	-
258	bp1	D197R15	somatic_tumour	X	12462242	Rab40	intron	X	12464652	CG42258	intron	BND	2.4	0.16	precise	0	-
258	bp2	D197R15	somatic_tumour	X	12464652	CG42258	intron	X	12462242	Rab40	intron	BND	2.4	0.16	precise	0	-
260	bp1	D197R15	somatic_tumour	X	12784003	CG32647	intron	X	12784203	CG32647	intron	BND	0.2	0.1	precise	0	-
260	bp2	D197R15	somatic_tumour	X	12784203	CG32647	intron	X	12784003	CG32647	intron	BND	0.2	0.1	precise	0	-
262	bp1	D197R15	somatic_tumour	X	13289080	CG15744	exon	X	13289347	CG15744	exon	BND	0.3	0.07	precise	11	-
262	bp2	D197R15	somatic_tumour	X	13289347	CG15744	exon	X	13289080	CG15744	exon	BND	0.3	0.07	precise	11	-
263	bp1	D197R15	somatic_tumour	X	13743901	Grip91	intron	X	13744074	Grip91	intron	BND	0.2	0.22	precise	0	-
263	bp2	D197R15	somatic_tumour	X	13744074	Grip91	intron	X	13743901	Grip91	intron	BND	0.2	0.22	precise	0	-
265	bp1	D197R15	somatic_tumour	X	14322970	dpr8	intron	X	14324678	dpr8	intron	BND	1.7	0.12	precise	0	-
265	bp2	D197R15	somatic_tumour	X	14324678	dpr8	intron	X	14322970	dpr8	intron	BND	1.7	0.12	precise	0	-
266	bp1	D197R15	germline_private	X	14757967	CG15890	3UTR	X	14759104	CG15890	exon_4	INV	1.1	-	precise	0	-
266	bp2	D197R15	germline_private	X	14759104	CG15890	exon_4	X	14757967	CG15890	3UTR	INV	1.1	-	precise	0	-
268	bp1	D197R15	somatic_tumour	X	15095366	Rab3-GEF	intron	X	15095475	CG9072	3UTR	BND	0.1	0.19	precise	0	-
268	bp2	D197R15	somatic_tumour	X	15095475	CG9072	3UTR	X	15095366	Rab3-GEF	intron	BND	0.1	0.19	precise	0	-
269	bp1	D197R15	somatic_tumour	X	15437201	Cngl	intron	X	15437354	Cngl	intron	BND	0.2	0.29	precise	0	-
269	bp2	D197R15	somatic_tumour	X	15437354	Cngl	intron	X	15437201	Cngl	intron	BND	0.2	0.29	precise	0	-
270	bp1	D197R15	somatic_tumour	X	15552822	Ac13E	intron	X	15553632	Ac13E	intron	BND	0.8	0.17	precise	0	-
270	bp2	D197R15	somatic_tumour	X	15553632	Ac13E	intron	X	15552822	Ac13E	intron	BND	0.8	0.17	precise	0	-
273	bp1	D197R15	somatic_tumour	X	16482295	para	intron	X	16482707	para	exon_23	BND	0.4	0.12	precise	12	-
273	bp2	D197R15	somatic_tumour	X	16482707	para	exon_23	X	16482295	para	intron	BND	0.4	0.12	precise	12	-
277	bp1	D197R15	somatic_tumour	X	17171666	baz	intron	X	17173314	baz	intron	BND	1.6	0.16	precise	0	-
277	bp2	D197R15	somatic_tumour	X	17173314	baz	intron	X	17171666	baz	intron	BND	1.6	0.16	precise	0	-
278	bp1	D197R15	somatic_tumour	X	17280290	f	exon	X	17299630	Fim	intron	DUP	19.3	0.38	imprecise	0	-
278	bp2	D197R15	somatic_tumour	X	17299630	Fim	intron	X	17280290	f	exon	DUP	19.3	0.38	imprecise	0	-
280	bp1	D197R15	somatic_tumour	X	17349649	intergenic	intergenic	X	17349814	intergenic	intergenic	BND	0.2	0.12	precise	0	-
280	bp2	D197R15	somatic_tumour	X	17349814	intergenic	intergenic	X	17349649	intergenic	intergenic	BND	0.2	0.12	precise	0	-
281	bp1	D197R15	somatic_tumour	X	17529362	CG43658	intron	X	17531178	CG43658	exon_1	BND	1.8	0.15	precise	0	-
281	bp2	D197R15	somatic_tumour	X	17531178	CG43658	exon_1	X	17529362	CG43658	intron	BND	1.8	0.15	precise	0	-
282	bp1	D197R15	somatic_tumour	X	17878490	mnb	5UTR	X	17879341	mnb	intron	BND	0.9	0.07	precise	0	-
282	bp2	D197R15	somatic_tumour	X	17879341	mnb	intron	X	17878490	mnb	5UTR	BND	0.9	0.07	precise	0	-
284	bp1	D197R15	somatic_tumour	X	18677014	intergenic	intergenic	X	18677833	intergenic	intergenic	BND	0.8	0.15	precise	0	-
284	bp2	D197R15	somatic_tumour	X	18677833	intergenic	intergenic	X	18677014	intergenic	intergenic	BND	0.8	0.15	precise	0	-
285	bp1	D197R15	somatic_tumour	X	19150554	RhoGAP18B	intron	X	19150669	RhoGAP18B	intron	BND	0.1	0.11	precise	0	-
285	bp2	D197R15	somatic_tumour	X	19150669	RhoGAP18B	intron	X	19150554	RhoGAP18B	intron	BND	0.1	0.11	precise	0	-
286	bp1	D197R15	somatic_tumour	X	19494272	CG12204	exon	X	19494759	ksh	exon_2	BND	0.5	0.04	precise	0	-
286	bp2	D197R15	somatic_tumour	X	19494759	ksh	exon_2	X	19494272	CG12204	exon	BND	0.5	0.04	precise	0	-
289	bp1	D197R15	somatic_tumour	X	20287396	intergenic	intergenic	X	20287523	intergenic	intergenic	BND	0.1	0.14	precise	0	-
289	bp2	D197R15	somatic_tumour	X	20287523	intergenic	intergenic	X	20287396	intergenic	intergenic	BND	0.1	0.14	precise	0	-
292	bp1	D197R15	somatic_tumour	X	22995038	stnA	exon_2	X	22995394	stnA	exon_2	BND	0.4	0.15	precise	0	-
292	bp2	D197R15	somatic_tumour	X	22995394	stnA	exon_2	X	22995038	stnA	exon_2	BND	0.4	0.15	precise	0	-
18	bp1	HUM-1	somatic_tumour	2L	16310775	intergenic	intergenic	4	1148246	Kif3C	intron	TRA	15162.5	0.1	precise	CGGTCAC	Alt-EJ
18	bp2	HUM-1	somatic_tumour	4	1148246	Kif3C	intron	2L	16310775	intergenic	intergenic	TRA	15162.5	0.1	precise	CGGTCAC	Alt-EJ
31	bp1	HUM-1	somatic_tumour	2R	13941000	shot	intron	2R	13946000	AGO1	3UTR	DUP	5.0	0.38	imprecise	0	-
31	bp2	HUM-1	somatic_tumour	2R	13946000	AGO1	3UTR	2R	13941000	shot	intron	DUP	5.0	0.38	imprecise	0	-
48	bp1	HUM-1	somatic_tumour	3L	9892365	CalpB	3UTR	3L	9894889	CG6707	3UTR	DEL	2.5	0.35	precise	TA	Alt-EJ
48	bp2	HUM-1	somatic_tumour	3L	9894889	CG6707	3UTR	3L	9892365	CalpB	3UTR	DEL	2.5	0.35	precise	TA	Alt-EJ
52	bp1	HUM-1	somatic_tumour	3L	15393000	intergenic	intergenic	3L	15396000	intergenic	intergenic	DUP	3.0	0.43	imprecise	0	-
52	bp2	HUM-1	somatic_tumour	3L	15396000	intergenic	intergenic	3L	15393000	intergenic	intergenic	DUP	3.0	0.43	imprecise	0	-
74	bp1	HUM-1	somatic_tumour	X	2793253	w	intron	X	3266169	dnc	intron	DEL	472.0	0.9	precise	0	-
74	bp2	HUM-1	somatic_tumour	X	3266169	dnc	intron	X	2793253	w	intron	DEL	472.0	0.9	precise	0	-
74	bp1	HUM-1	somatic_tumour	X	2794000	w	intron	X	3266000	dnc	intron	DEL	472.0	0.9	imprecise	0	-
74	bp2	HUM-1	somatic_tumour	X	3266000	dnc	intron	X	2794000	w	intron	DEL	472.0	0.9	imprecise	0	-
76	bp1	HUM-1	somatic_tumour	X	4586393	CR32773	ncRNA	X	4588701	CR32773	ncRNA	DEL	2.3	0.56	precise	0	NHEJ
76	bp2	HUM-1	somatic_tumour	X	4588701	CR32773	ncRNA	X	4586393	CR32773	ncRNA	DEL	2.3	0.56	precise	0	NHEJ
24	bp1	HUM-4	somatic_tumour	X	3169736	N	exon_7	X	3199425	dnc	intron	COMPLEX_DEL	30.0	0.95	precise	0	-
24	bp2	HUM-4	somatic_tumour	X	3199425	dnc	intron	X	3169736	N	exon_7	COMPLEX_DEL	30.0	0.95	precise	0	-
24	bp1	HUM-4	somatic_tumour	X	3199425	dnc	intron	X	3215747	dnc	intron	COMPLEX_DUP	30.0	0.89	precise	0	-
24	bp2	HUM-4	somatic_tumour	X	3215747	dnc	intron	X	3199425	dnc	intron	COMPLEX_DUP	30.0	0.89	precise	0	-
24	bp1	HUM-4	somatic_tumour	X	3199427	dnc	intron	X	3200763	dnc	intron	COMPLEX_BND	1.3	0.54	precise	0	FoSTeS
24	bp2	HUM-4	somatic_tumour	X	3200763	dnc	intron	X	3199427	dnc	intron	COMPLEX_BND	1.3	0.54	precise	0	FoSTeS
35	bp1	HUM-7	somatic_tumour	3L	9960263	CG34356	intron	2R	13424638	CG42321	5UTR	TRA	3464.4	0.12	precise	ATT	Alt-EJ
35	bp2	HUM-7	somatic_tumour	2R	13424638	CG42321	5UTR	3L	9960263	CG34356	intron	TRA	3464.4	0.12	precise	ATT	Alt-EJ
54	bp1	HUM-7	somatic_tumour	3R	27111074	gb	intron	2L	11937060	Or33b	intron	TRA	15174.0	0.15	precise	0	NHEJ
54	bp2	HUM-7	somatic_tumour	2L	11937060	Or33b	intron	3R	27111074	gb	intron	TRA	15174.0	0.15	precise	0	NHEJ
60	bp1	HUM-7	somatic_tumour	X	3129531	kirre	exon_9	X	3364620	intergenic	intergenic	COMPLEX_BND	235.1	0.28	precise	C	Alt-EJ
60	bp2	HUM-7	somatic_tumour	X	3364620	intergenic	intergenic	X	3129531	kirre	exon_9	COMPLEX_BND	235.1	0.28	precise	C	Alt-EJ
60	bp1	HUM-7	somatic_tumour	X	3129531	kirre	exon_9	X	3364621	intergenic	intergenic	COMPLEX_DEL	235.1	0.87	precise	0	-
60	bp2	HUM-7	somatic_tumour	X	3364621	intergenic	intergenic	X	3129531	kirre	exon_9	COMPLEX_DEL	235.1	0.87	precise	0	-
60	bp1	HUM-7	somatic_tumour	X	3129945	kirre	exon_9	X	3164340	N	exon_6	COMPLEX_DEL	34.4	0.94	imprecise	0	-
60	bp2	HUM-7	somatic_tumour	X	3164340	N	exon_6	X	3129945	kirre	exon_9	COMPLEX_DEL	34.4	0.94	imprecise	0	-
60	bp1	HUM-7	somatic_tumour	X	3171219	N	3UTR	X	3352366	intergenic	intergenic	COMPLEX_DEL	181.1	0.95	imprecise	0	-
60	bp2	HUM-7	somatic_tumour	X	3352366	intergenic	intergenic	X	3171219	N	3UTR	COMPLEX_DEL	181.1	0.95	imprecise	0	-
60	bp1	HUM-7	somatic_tumour	X	3351890	intergenic	intergenic	X	3353248	intergenic	intergenic	COMPLEX_BND	1.4	0.87	precise	0	FoSTeS
60	bp2	HUM-7	somatic_tumour	X	3353248	intergenic	intergenic	X	3351890	intergenic	intergenic	COMPLEX_BND	1.4	0.87	precise	0	FoSTeS
60	bp1	HUM-7	somatic_tumour	X	3354465	intergenic	intergenic	X	3364533	intergenic	intergenic	COMPLEX_DUP	10.1	0.92	precise	0	-
60	bp2	HUM-7	somatic_tumour	X	3364533	intergenic	intergenic	X	3354465	intergenic	intergenic	COMPLEX_DUP	10.1	0.92	precise	0	-
