sample	chromosome	pos	ref	alt	trinuc	trans	decomp_trinuc	allele_frequency	caller	variant_type	status	snpEff_anno	feature	gene	id
A373R11	2L	179509	TTCTTTGTTTGTCGCATACCTTGGACACACA	'T'	GCCTTTCTT	INS	GCCTTTCTT	0.256	strelka	upstream_gene_variant	MODIFIER	spen	intron	spen	FBgn0016977
A373R11	2L	1138255	A	'AT'	AAAGACCCT	INS	AGGGTCTTT	0.0617	strelka	upstream_gene_variant	MODIFIER	Iris	intron	CG4577	FBgn0031306
A373R11	2L	1141935	T	'TGTAAGTTCTAAACTAA'	TTTATACTA	INS	TTTATACTA	0.306	strelka	upstream_gene_variant	MODIFIER	CR45717	intergenic	intergenic	intergenic
A373R11	2L	1384853	TA	'T'	ACTTTATTT	INS	ACTTTATTT	0.0563	strelka	upstream_gene_variant	MODIFIER	CR44898	intron	robo2	FBgn0002543
A373R11	2L	1526316	GT	'G'	GCTTGTTTT	INS	GCTTGTTTT	0.082	strelka	downstream_gene_variant	MODIFIER	Or22a	intergenic	intergenic	intergenic
A373R11	2L	1562562	A	'ACAGCACCGATGGAGCTCAAAACGTTT'	AAAGACGGC	INS	GCCGTCTTT	0.312	strelka	intron_variant	MODIFIER	haf	intron	haf	FBgn0261509
A373R11	2L	1692707	GTAATA	'G'	TATAGTAAT	INS	TATAGTAAT	0.203	strelka	intron_variant	MODIFIER	chinmo	intron	chinmo	FBgn0086758
A373R11	2L	1799967	T	'TCCA'	GATTTCCGT	INS	GATTTCCGT	0.103	strelka	intergenic_region	MODIFIER	Gr22a-CG31933	intergenic	intergenic	intergenic
A373R11	2L	2498214	AAT	'A'	AAAAAATAA	INS	AAAAAATAA	0.122	mutect2	3_prime_UTR_variant	MODIFIER	oaf	3UTR	oaf	FBgn0011818
A373R11	2L	3713223	TA	'T'	TAAGTAGTA	INS	TAAGTAGTA	0.214	strelka	upstream_gene_variant	MODIFIER	cutlet	intergenic	intergenic	intergenic
A373R11	2L	4086583	ATG	'A'	ATATATGTA	INS	ATATATGTA	0.163	strelka	downstream_gene_variant	MODIFIER	snoRNA:Me28S-C437	intron	ed	FBgn0000547
A373R11	2L	4234595	AT	'A'	ATACATTAA	INS	ATACATTAA	0.0494	strelka	intergenic_region	MODIFIER	CR44608-CR45720	intergenic	intergenic	intergenic
A373R11	2L	7584766	A	'ATCC'	GGACACCCC	INS	GGGGTGTCC	0.0635	strelka	downstream_gene_variant	MODIFIER	Spn28B	intergenic	intergenic	intergenic
A373R11	2L	7854751	CT	'C'	CTTACTTTT	INS	CTTACTTTT	0.167	strelka	upstream_gene_variant	MODIFIER	lectin-28C	intron	CG14535	FBgn0031955
A373R11	2L	8716948	T	'TAAGAGAAA'	CCCTTTAGA	INS	CCCTTTAGA	0.135	strelka	upstream_gene_variant	MODIFIER	raw	intron	raw	FBgn0003209
A373R11	2L	8716960	AATTTTGATGATAAAC	'A'	AGAAAATTT	INS	AGAAAATTT	0.121	strelka	upstream_gene_variant	MODIFIER	raw	intron	raw	FBgn0003209
A373R11	2L	9874718	A	'ATCTGTGTGCGTGTG'	CCGTATCTG	INS	CAGATACGG	0.1	strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
A373R11	2L	11044920	GT	'G'	TTGGGTTTT	INS	TTGGGTTTT	0.133	strelka	intron_variant	MODIFIER	Samuel	intron	Samuel	FBgn0032330
A373R11	2L	12093244	TATGTACACTATTATATTGTAG	'T'	TAAATATGT	INS	TAAATATGT	0.098	strelka	upstream_gene_variant	MODIFIER	CR44594	intron	Pex19	FBgn0032407
A373R11	2L	12796380	GT	'G'	CCACGTTTT	INS	CCACGTTTT	0.1	strelka	intergenic_region	MODIFIER	CG15483-CR43818	intergenic	intergenic	intergenic
A373R11	2L	16717371	TACA	'T'	TGGTTACAA	INS	TGGTTACAA	0.0625	mutect2	upstream_gene_variant	MODIFIER	CG31808	intron	Cyt-c-d	FBgn0086907
A373R11	2L	18914034	AC	'A'	TATCACAAA	INS	TATCACAAA	0.397	strelka	downstream_gene_variant	MODIFIER	ssp3	intergenic	intergenic	intergenic
A373R11	2L	21827319	A	'AG'	CCATATGAA	INS	TTCATATGG	0.2	strelka	upstream_gene_variant	MODIFIER	tsh	intergenic	intergenic	intergenic
A373R11	2L	23369551	T	'TTA'	TTATTTTTT	INS	TTATTTTTT	0.161	strelka	intergenic_region	MODIFIER	CR42530-CR41519	intergenic	intergenic	intergenic
A373R11	2R	3276491	AG	'A'	GAGAAGGGT	INS	GAGAAGGGT	0.0632	strelka	intergenic_region	MODIFIER	CG42596-CR41243	intergenic	intergenic	intergenic
A373R11	2R	4823798	T	'TTTATGTTTATTATTAAGCCCTG'	AGAATTAAT	INS	AGAATTAAT	0.259	strelka	intron_variant	MODIFIER	CG17528	intron	CG17528	FBgn0261387
A373R11	2R	4863106	AT	'A'	CGAAATATC	INS	CGAAATATC	0.133	strelka	intergenic_region	MODIFIER	CG14464-CG44102	intergenic	intergenic	intergenic
A373R11	2R	7255628	A	'AGTATGT'	GCTTAATAT	INS	ATATTAAGC	0.121	strelka	downstream_gene_variant	MODIFIER	Gadd45	exon_1	CR45280	FBgn0266818
A373R11	2R	9981439	CAGAG	'C'	GAGACAGAG	INS	GAGACAGAG	0.2	strelka	upstream_gene_variant	MODIFIER	CR43948	intergenic	intergenic	intergenic
A373R11	2R	10750718	CTATATAGCGCATATAGCA	'C'	TGCGCTATA	INS	TGCGCTATA	0.0741	strelka	intron_variant	MODIFIER	CG33144	intron	CG33144	FBgn0053144
A373R11	2R	11193612	AT	'A'	TGTTATTTT	INS	TGTTATTTT	0.391	mutect2	upstream_gene_variant	MODIFIER	shn	intron	shn	FBgn0003396
A373R11	2R	11208202	G	'GTT'	TTCGGTTTT	INS	AAAACCGAA	0.0909	strelka	intron_variant	MODIFIER	shn	intron	shn	FBgn0003396
A373R11	2R	16571017	GA	'G'	GAACGAAAA	INS	GAACGAAAA	0.0704	strelka	5_prime_UTR_variant	MODIFIER	RpS15	5UTR	RpS15	FBgn0034138
A373R11	2R	18643048	GGCTGATTCGATTCCCATTC	'G'	CTGCGGCTG	INS	CTGCGGCTG	0.191	strelka	upstream_gene_variant	MODIFIER	CG30122	intron	SP2637	FBgn0034371
A373R11	2R	20403750	G	'GTA'	ATTTGTCTT	INS	AAGACAAAT	0.111	mutect2	intergenic_region	MODIFIER	CG11192-CG12484	intergenic	intergenic	intergenic
A373R11	2R	20478418	CA	'C'	CAAACAAAA	INS	CAAACAAAA	0.12	strelka	3_prime_UTR_variant	MODIFIER	CG12484	3UTR	CG12484	FBgn0086604
A373R11	2R	20554728	AATGCTCGC	'A'	GTTCAATGC	INS	GTTCAATGC	0.354	strelka	upstream_gene_variant	MODIFIER	Obp57d	intergenic	intergenic	intergenic
A373R11	3L	2150720	AT	'A'	AGTAATTTT	INS	AGTAATTTT	0.532	strelka	downstream_gene_variant	MODIFIER	CG15822	intron	zormin	FBgn0052311
A373R11	3L	4718245	G	'GA'	ATAGGAAAA	INS	TTTTCCTAT	0.0682	strelka	intron_variant	MODIFIER	RhoGEF64C	intron	RhoGEF64C	FBgn0035574
A373R11	3L	5418782	TCCCCGATTTC	'T'	CATTTCCCC	INS	CATTTCCCC	0.139	strelka	intergenic_region	MODIFIER	Ir64a-CG34391	intergenic	intergenic	intergenic
A373R11	3L	6356432	CA	'C'	CTAACAAAT	INS	CTAACAAAT	0.317	strelka	upstream_gene_variant	MODIFIER	CG13300	intergenic	intergenic	intergenic
A373R11	3L	7206222	GCACC	'G'	AAGCGCACC	INS	AAGCGCACC	0.341	strelka	intergenic_region	MODIFIER	Dscam2-CR45410	intergenic	intergenic	intergenic
A373R11	3L	7814326	AT	'A'	TTCGATTTT	INS	TTCGATTTT	0.0968	strelka	3_prime_UTR_variant	MODIFIER	Pdp1	3UTR	Pdp1	FBgn0016694
A373R11	3L	8577188	C	'CTGGTTGGATTGTTGGATTA'	ATGGCATGT	INS	ATGGCATGT	0.171	strelka	5_prime_UTR_variant	MODIFIER	CG43078	exon_1	CG43078	FBgn0262508
A373R11	3L	8577191	GTTGCCCA	'G'	GCATGTTGC	INS	GCATGTTGC	0.129	strelka	5_prime_UTR_variant	MODIFIER	CG43078	exon_1	CG43078	FBgn0262508
A373R11	3L	9523488	ATATG	'A'	ACATATATG	INS	ACATATATG	0.0676	mutect2	intron_variant	MODIFIER	CG33700	intron	CG33700	FBgn0053700
A373R11	3L	9832069	C	'CA'	CAACCAACA	INS	CAACCAACA	0.0408	strelka	3_prime_UTR_variant	MODIFIER	CG43897	exon_4	CG43897	FBgn0264489
A373R11	3L	10502093	AAGCATAAAACAAGACACCAAAGAAAAATAAAAACGCAGCGTGC	'A'	TAAAAAGCA	INS	TAAAAAGCA	0.146	strelka	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
A373R11	3L	10726438	GAC	'G'	CACGGACAC	INS	CACGGACAC	0.098	strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
A373R11	3L	11242914	CGA	'C'	AGAGCGAGA	INS	AGAGCGAGA	0.11	strelka	upstream_gene_variant	MODIFIER	CR44713	intergenic	intergenic	intergenic
A373R11	3L	12726526	TCAGAATC	'T'	GCACTCAGA	INS	GCACTCAGA	0.121	strelka	intergenic_region	MODIFIER	mirr-SmD1	intergenic	intergenic	intergenic
A373R11	3L	13800878	ATG	'A'	GTATATGTG	INS	GTATATGTG	0.0714	strelka	upstream_gene_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A373R11	3L	17680111	C	'CATTATAAA'	ATAACGTTG	INS	ATAACGTTG	0.306	strelka	intron_variant	MODIFIER	CG34251	intron	CG34251	FBgn0085280
A373R11	3L	18201943	TC	'T'	TATATCAAT	INS	TATATCAAT	0.13	strelka	frameshift_variant	HIGH	CG7320	exon	CG7320	FBgn0036782
A373R11	3L	19206145	C	'CT'	TCAACCCCA	INS	TCAACCCCA	0.0727	strelka	intron_variant	MODIFIER	fz2	intron	fz2	FBgn0016797
A373R11	3R	1519948	T	'TCGTATGC'	CTGGTCGAG	INS	CTGGTCGAG	0.204	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R11	3R	2517671	TAGTCCGG	'T'	CCGGTAGTC	INS	CCGGTAGTC	0.073	strelka	intergenic_region	MODIFIER	CG45784-CG45783	intron	Myo81F	FBgn0267431
A373R11	3R	4913068	GT	'G'	GTGTGTTTT	INS	GTGTGTTTT	0.135	strelka	downstream_gene_variant	MODIFIER	Gnf1	intron	Cdep	FBgn0265082
A373R11	3R	6881266	GCA	'G'	CCACGCACA	INS	CCACGCACA	0.0645	strelka	intron_variant	MODIFIER	CR44931	ncRNA	CR44931	FBgn0266236
A373R11	3R	8272131	G	'GTTTGGA'	TTGGGTTTG	INS	CAAACCCAA	0.31	strelka	upstream_gene_variant	MODIFIER	CG9630	intergenic	intergenic	intergenic
A373R11	3R	8926854	GA	'G'	AAGCGAAAA	INS	AAGCGAAAA	0.122	strelka	intron_variant	MODIFIER	pyd	intron	pyd	FBgn0262614
A373R11	3R	10631036	CAA	'C'	CACACAAAC	INS	CACACAAAC	0	consensus	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A373R11	3R	11877019	CAT	'C'	TGTACATAT	INS	TGTACATAT	0.143	strelka	upstream_gene_variant	MODIFIER	sad	intergenic	intergenic	intergenic
A373R11	3R	13014758	AAAAC	'A'	AAAAAAAAC	INS	AAAAAAAAC	0.312	mutect2	upstream_gene_variant	MODIFIER	CG8031	intron	CtBP	FBgn0020496
A373R11	3R	16071078	TCAACA	'T'	GCGATCAAC	INS	GCGATCAAC	0	consensus	frameshift_variant	HIGH	Mhcl	exon_15	Mhcl	FBgn0026059
A373R11	3R	16071084	C	'CGTGTT'	AACACGATC	INS	AACACGATC	0	consensus	frameshift_variant	HIGH	Mhcl	exon_15	Mhcl	FBgn0026059
A373R11	3R	20982141	G	'GA'	AAGTGTGGG	INS	CCCACACTT	0.0847	strelka	upstream_gene_variant	MODIFIER	Calx	intron	Calx	FBgn0013995
A373R11	3R	21091636	G	'GA'	AGACGAAAA	INS	TTTTCGTCT	0.0822	strelka	upstream_gene_variant	MODIFIER	CR44178	ncRNA	CR44178	FBgn0265067
A373R11	3R	21246207	A	'ATATATCT'	TAACATATT	INS	AATATGTTA	0.358	strelka	upstream_gene_variant	MODIFIER	ETHR	intergenic	intergenic	intergenic
A373R11	3R	24456043	C	'CAAGTAAATGTGTATATACAAG'	TTTGCAACT	INS	TTTGCAACT	0.273	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
A373R11	3R	26076861	GT	'G'	CTATGTTTT	INS	CTATGTTTT	0.113	strelka	3_prime_UTR_variant	MODIFIER	dys	3UTR	dysf	FBgn0039411
A373R11	3R	27104433	A	'AG'	GGAAAGAAG	INS	CTTCTTTCC	0.0645	strelka	splice_region_variant&intron_variant	LOW	CG6074	intron	caix	FBgn0039486
A373R11	3R	27742023	AC	'A'	TTGGACCCC	INS	TTGGACCCC	0.069	strelka	upstream_gene_variant	MODIFIER	Ets98B	intron	Ets98B	FBgn0005659
A373R11	3R	29467994	AAGTG	'A'	GTGTAAGTG	INS	GTGTAAGTG	0.143	mutect2	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
A373R11	X	10113891	GCAA	'G'	TTTGGCAAC	INS	TTTGGCAAC	0	consensus	downstream_gene_variant	MODIFIER	CR44894	intron	RhoU	FBgn0083940
A373R11	X	13927685	GCT	'G'	TCTCGCTCT	INS	TCTCGCTCT	0.176	strelka	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
A373R11	X	14369046	GCA	'G'	TGTCGCACA	INS	TGTCGCACA	0.152	strelka	intron_variant	MODIFIER	dpr8	intron	dpr8	FBgn0052600
A373R11	X	20251806	GCA	'G'	CACCGCACA	INS	CACCGCACA	0.087	strelka	upstream_gene_variant	MODIFIER	CG17068	intron	Rab10	FBgn0015789
A373R11	Y	860065	C	'CTGT'	GCTGCTGTT	INS	GCTGCTGTT	0.0977	strelka	intergenic_region	MODIFIER	ARY-Su(Ste):CR42422	intergenic	intergenic	intergenic
A373R11	Y	2112787	CT	'C'	AGACCTCCT	INS	AGACCTCCT	0.256	strelka	intergenic_region	MODIFIER	Ppr-Y-CR45931	intergenic	intergenic	intergenic
A373R11	Y	3633377	TTGCCAATAG	'T'	TTTCTTGCC	INS	TTTCTTGCC	0.192	strelka	intergenic_region	MODIFIER	Ory-Ccy	intergenic	intergenic	intergenic
A373R13	2L	1163861	GCT	'G'	AACAGCTCG	INS	AACAGCTCG	0.0638	mutect2	5_prime_UTR_variant	MODIFIER	CG5080	exon_1	CG5080	FBgn0031313
A373R13	2L	1400648	AT	'A'	AAACATGTT	INS	AAACATGTT	0.0784	strelka	intron_variant	MODIFIER	lea	intron	robo2	FBgn0002543
A373R13	2L	3197967	GA	'G'	AAGCGAAAA	INS	AAGCGAAAA	0.143	strelka	intron_variant	MODIFIER	CG34393	intron	CG34393	FBgn0085422
A373R13	2L	3273005	AAC	'A'	TATAAACTT	INS	TATAAACTT	0.235	strelka	downstream_gene_variant	MODIFIER	CR44484	intergenic	intergenic	intergenic
A373R13	2L	3273014	TATTATTATTATTTA	'T'	CAATTATTA	INS	CAATTATTA	0.25	strelka	downstream_gene_variant	MODIFIER	CR44484	intergenic	intergenic	intergenic
A373R13	2L	4453458	TCTG	'T'	GCGGTCTGC	INS	GCGGTCTGC	0.108	strelka	conservative_inframe_deletion	MODERATE	CG15440	exon	CG15440	FBgn0031607
A373R13	2L	5359898	AT	'A'	GAGCATCGT	INS	GAGCATCGT	0.0536	mutect2	frameshift_variant	HIGH	nompC	exon_12	nompC	FBgn0016920
A373R13	2L	6583442	GA	'G'	GAGAGATAG	INS	GAGAGATAG	0	consensus	intron_variant	MODIFIER	CG11319	intron	CG11319	FBgn0031835
A373R13	2L	9652285	C	'CG'	ATTCCGGAT	INS	ATTCCGGAT	0.0909	strelka	frameshift_variant	HIGH	Apoltp	exon_14	Apoltp	FBgn0032136
A373R13	2L	12663713	C	'CA'	AAAACAATT	INS	AAAACAATT	0.0968	mutect2	downstream_gene_variant	MODIFIER	CG15485	intron	pdm2	FBgn0004394
A373R13	2L	12850508	G	'GT'	AACCGTTTT	INS	AAAACGGTT	0.125	strelka	intergenic_region	MODIFIER	CR44971-ACXC	intergenic	intergenic	intergenic
A373R13	2L	15332617	A	'ATT'	ACCCAATAA	INS	TTATTGGGT	0.172	mutect2	upstream_gene_variant	MODIFIER	esg	intergenic	intergenic	intergenic
A373R13	2L	17467217	AT	'A'	ACCTATTTT	INS	ACCTATTTT	0.143	strelka	upstream_gene_variant	MODIFIER	Sgt	intron	BicD	FBgn0000183
A373R13	2L	19613042	CT	'C'	CGGCCTTTT	INS	CGGCCTTTT	0.14	strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
A373R13	2L	21390347	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.19	strelka	3_prime_UTR_variant	MODIFIER	nrv3	3UTR	nrv3	FBgn0032946
A373R13	2L	23426223	TA	'T'	AAAGTAAAA	INS	AAAGTAAAA	0.375	strelka	intergenic_region	MODIFIER	CR41519-CHR_END	intergenic	intergenic	intergenic
A373R13	2R	1594365	AT	'A'	ACAGATTTT	INS	ACAGATTTT	0.1	strelka	downstream_gene_variant	MODIFIER	CG17691	intron	CG17691	FBgn0039993
A373R13	2R	5859748	AT	'A'	AGCCATAAT	INS	AGCCATAAT	0.0741	strelka	3_prime_UTR_variant	MODIFIER	dpr12	3UTR	dpr12	FBgn0085414
A373R13	2R	6893791	A	'ACG'	ACACACGCG	INS	CGCGTGTGT	0.0889	strelka	intron_variant	MODIFIER	CG30158	intron	CG30158	FBgn0050158
A373R13	2R	7337313	GA	'G'	CACGGAAAC	INS	CACGGAAAC	0.1	strelka	frameshift_variant	HIGH	Dscam1	exon_9	Dscam1	FBgn0033159
A373R13	2R	8324856	AGAGT	'A'	AGAGAGAGT	INS	AGAGAGAGT	0.119	mutect2	upstream_gene_variant	MODIFIER	pdm3	intergenic	intergenic	intergenic
A373R13	2R	8745529	C	'CA'	ACACCACTT	INS	ACACCACTT	0.0909	strelka	upstream_gene_variant	MODIFIER	CR44277	intron	CG8740	FBgn0027585
A373R13	2R	15575333	G	'GGGGAGTTT'	ATGTGGAAG	INS	CTTCCACAT	0.265	strelka	upstream_gene_variant	MODIFIER	Cdk5	intergenic	intergenic	intergenic
A373R13	2R	16472862	G	'GA'	GAAAGAAAA	INS	TTTTCTTTC	0.225	strelka	downstream_gene_variant	MODIFIER	CheB53b	intergenic	intergenic	intergenic
A373R13	2R	17495686	TA	'T'	TATCTATCC	INS	TATCTATCC	0.0755	strelka	frameshift_variant	HIGH	CG30103	exon	CG30103	FBgn0050103
A373R13	2R	19063008	AATTTGT	'A'	CCATAATTT	INS	CCATAATTT	0.115	strelka	upstream_gene_variant	MODIFIER	5-HT1A	intergenic	intergenic	intergenic
A373R13	2R	20099342	T	'TACTATA'	ACTATATGT	INS	ACTATATGT	0.444	strelka	intergenic_region	MODIFIER	CR44633-18w	intergenic	intergenic	intergenic
A373R13	2R	20272561	C	'CG'	TCCGCGTTT	INS	TCCGCGTTT	0.0769	mutect2	frameshift_variant	HIGH	CG10444	exon	CG10444	FBgn0034494
A373R13	2R	22460425	GTTGAATCAGTTTC	'G'	TTATGTTGA	INS	TTATGTTGA	0.263	strelka	intron_variant	MODIFIER	CG10384	intron	CG10384	FBgn0034731
A373R13	2R	22692051	TA	'T'	ATCTTAAAA	INS	ATCTTAAAA	0.115	strelka	upstream_gene_variant	MODIFIER	Ppa	intergenic	intergenic	intergenic
A373R13	2R	22812410	AT	'A'	CTTCATTTT	INS	CTTCATTTT	0.111	strelka	frameshift_variant	HIGH	stl	exon_4	stl	FBgn0086408
A373R13	2R	22981735	C	'CT'	ACCCCTTTT	INS	ACCCCTTTT	0.163	strelka	upstream_gene_variant	MODIFIER	CR42742	intergenic	intergenic	intergenic
A373R13	3L	499906	GACATGAGAAAATAATCCGCACA	'G'	GCGGGACAT	INS	GCGGGACAT	0.267	strelka	upstream_gene_variant	MODIFIER	CG34268	intron	klar	FBgn0001316
A373R13	3L	1103248	T	'TTA'	GCTTTTTAG	INS	GCTTTTTAG	0.3	strelka	upstream_gene_variant	MODIFIER	bab1	intergenic	intergenic	intergenic
A373R13	3L	1103250	TAGGC	'T'	TTTTTAGGC	INS	TTTTTAGGC	0.333	strelka	upstream_gene_variant	MODIFIER	bab1	intergenic	intergenic	intergenic
A373R13	3L	1919568	G	'GGGGGGGT'	GGGGGGCTT	INS	AAGCCCCCC	0.133	mutect2	upstream_gene_variant	MODIFIER	Dbx	intergenic	intergenic	intergenic
A373R13	3L	4224699	T	'TG'	GATTTTTTT	INS	GATTTTTTT	0.13	strelka	3_prime_UTR_variant	MODIFIER	ImpL2	3UTR	ImpL2	FBgn0001257
A373R13	3L	5155878	GT	'G'	TTGTGTTTT	INS	TTGTGTTTT	0.278	strelka	3_prime_UTR_variant	MODIFIER	shep	3UTR	shep	FBgn0052423
A373R13	3L	5168799	GC	'G'	TAGTGCCCC	INS	TAGTGCCCC	0.152	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
A373R13	3L	7161503	CCTG	'C'	GGTGCCTGC	INS	GGTGCCTGC	0.129	strelka	conservative_inframe_deletion	MODERATE	Dscam2	exon	Dscam2	FBgn0265296
A373R13	3L	7356893	CG	'C'	TAAGCGGTT	INS	TAAGCGGTT	0.125	mutect2	upstream_gene_variant	MODIFIER	CTCF	intergenic	intergenic	intergenic
A373R13	3L	7503674	AT	'A'	TAACATTTT	INS	TAACATTTT	0.211	strelka	upstream_gene_variant	MODIFIER	CG8539	intergenic	intergenic	intergenic
A373R13	3L	8523538	CGCA	'C'	TGGTCGCAG	INS	TGGTCGCAG	0.25	strelka	upstream_gene_variant	MODIFIER	GstO2	intergenic	intergenic	intergenic
A373R13	3L	9908224	AATC	'A'	AACAAATCA	INS	AACAAATCA	0.182	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
A373R13	3L	10252069	ACAAAACCCAAT	'A'	ACGAACAAA	INS	ACGAACAAA	0.231	strelka	upstream_gene_variant	MODIFIER	CR44540	intergenic	intergenic	intergenic
A373R13	3L	10934642	CT	'C'	TGCTCTTTT	INS	TGCTCTTTT	0.0889	strelka	intergenic_region	MODIFIER	Aps-CR45248	intergenic	intergenic	intergenic
A373R13	3L	11159508	TCAG	'T'	AACATCAGC	INS	AACATCAGC	0.238	strelka	conservative_inframe_deletion	MODERATE	CG32082	exon_8	CG32082	FBgn0052082
A373R13	3L	14318149	C	'CT'	CCTGCTTTT	INS	CCTGCTTTT	0.119	strelka	downstream_gene_variant	MODIFIER	CR45025	intron	fz	FBgn0001085
A373R13	3L	16656563	C	'CA'	ATTGCAAAA	INS	ATTGCAAAA	0.109	strelka	downstream_gene_variant	MODIFIER	snRNA:U12:73B	intron	Baldspot	FBgn0260960
A373R13	3L	16978202	TTC	'T'	TTTTTTCCT	INS	TTTTTTCCT	0.0909	mutect2	intron_variant	MODIFIER	Exn	intron	Exn	FBgn0261547
A373R13	3L	18430494	C	'CA'	AGGGCACAA	INS	AGGGCACAA	0.111	strelka	intergenic_region	MODIFIER	rpr-skl	intergenic	intergenic	intergenic
A373R13	3L	19460063	CTA	'C'	TTTGCTATG	INS	TTTGCTATG	0.06	mutect2	downstream_gene_variant	MODIFIER	CR45434	intergenic	intergenic	intergenic
A373R13	3L	19981814	T	'TTA'	TACCTTATA	INS	TACCTTATA	0.2	strelka	upstream_gene_variant	MODIFIER	CG14182	intron	CG17732	FBgn0036923
A373R13	3L	20055250	CA	'C'	TCGGCAATT	INS	TCGGCAATT	0.176	mutect2,strelka	downstream_gene_variant	MODIFIER	sNPF-R	intergenic	intergenic	intergenic
A373R13	3L	21143673	C	'CACTTTTCAACGAATCTCGTGTACCCATT'	TGTACACTC	INS	TGTACACTC	0.115	strelka	intron_variant	MODIFIER	Ac78C	intron	Ac78C	FBgn0024150
A373R13	3L	23337301	A	'AT'	ATATATTTT	INS	AAAATATAT	0.227	strelka	upstream_gene_variant	MODIFIER	mir-4942	intron	alpha-Cat	FBgn0010215
A373R13	3L	26833122	T	'TG'	TTGTTGTTT	INS	TTGTTGTTT	0.125	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A373R13	3R	447631	GT	'G'	ATTAGTTTT	INS	ATTAGTTTT	0.267	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A373R13	3R	1980814	A	'AG'	TTTAAGGAA	INS	TTCCTTAAA	0.13	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R13	3R	2517035	TTG	'T'	CATGTTGTG	INS	CATGTTGTG	0.087	strelka	intergenic_region	MODIFIER	CG45784-CG45783	intron	Myo81F	FBgn0267431
A373R13	3R	8060612	GA	'G'	CGACGAAAA	INS	CGACGAAAA	0.0784	strelka	downstream_gene_variant	MODIFIER	CG43060	intron	mAChR-B	FBgn0037546
A373R13	3R	8375754	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.222	strelka	downstream_gene_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
A373R13	3R	9211639	AT	'A'	CAATATTTG	INS	CAATATTTG	0.0588	mutect2	intron_variant	MODIFIER	pum	intron	pum	FBgn0003165
A373R13	3R	11206407	GT	'G'	TTGTGTTTT	INS	TTGTGTTTT	0.135	strelka	upstream_gene_variant	MODIFIER	Tctp	intron	cu	FBgn0261808
A373R13	3R	11578580	AGCAG	'A'	CAGCAGCAG	INS	CAGCAGCAG	0.0816	strelka	frameshift_variant	HIGH	CG6790	exon_1	CG6790	FBgn0037915
A373R13	3R	16174638	GTA	'G'	TTCTGTATA	INS	TTCTGTATA	0.0656	mutect2	downstream_gene_variant	MODIFIER	CG6006	intron	CG8925	FBgn0038404
A373R13	3R	19744261	GCA	'G'	AACCGCACA	INS	AACCGCACA	0.16	strelka	intron_variant	MODIFIER	GluClalpha	exon_1	CR43488	FBgn0263499
A373R13	3R	23374941	TAC	'T'	TGACTACAC	INS	TGACTACAC	0.0811	strelka	upstream_gene_variant	MODIFIER	CR44322	intergenic	intergenic	intergenic
A373R13	3R	23375231	C	'CTAATCATTTTTCAAACGA'	AAAACAAAA	INS	AAAACAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	CR44322	intergenic	intergenic	intergenic
A373R13	3R	24596036	G	'GA'	TTTCGAAAA	INS	TTTTCGAAA	0.156	strelka	intron_variant	MODIFIER	mld	intron	mld	FBgn0263490
A373R13	3R	25137920	GGGT	'G'	TGGTGGGTG	INS	TGGTGGGTG	0.075	mutect2	upstream_gene_variant	MODIFIER	danr	exon_1	CR46098	FBgn0267767
A373R13	3R	25554690	TTG	'T'	ATTTTTGTG	INS	ATTTTTGTG	0.114	strelka	upstream_gene_variant	MODIFIER	CR46100	intron	msi	FBgn0011666
A373R13	3R	25594655	CA	'C'	ACAGCAAAA	INS	ACAGCAAAA	0.2	strelka	5_prime_UTR_variant	MODIFIER	msi	intron	ymp	FBgn0261287
A373R13	3R	26462866	G	'GC'	TAAAGTAAT	INS	ATTACTTTA	0.353	strelka	upstream_gene_variant	MODIFIER	CG5455	intron	CG5455	FBgn0039430
A373R13	3R	27662305	C	'CA'	TCGGCAAAA	INS	TCGGCAAAA	0.107	mutect2,strelka	upstream_gene_variant	MODIFIER	Mlc1	intergenic	intergenic	intergenic
A373R13	3R	28603823	TG	'T'	CATATGTTG	INS	CATATGTTG	0	consensus	upstream_gene_variant	MODIFIER	Noa36	intron	Hrb98DE	FBgn0001215
A373R13	3R	28603826	TG	'T'	ATGTTGTGT	INS	ATGTTGTGT	0	consensus	upstream_gene_variant	MODIFIER	Noa36	intron	Hrb98DE	FBgn0001215
A373R13	3R	28780161	TGCC	'T'	TGTTTGCCT	INS	TGTTTGCCT	0.0909	mutect2	downstream_gene_variant	MODIFIER	CR44952	intergenic	intergenic	intergenic
A373R13	3R	30740124	GGGTGGC	'G'	GTTGGGGTG	INS	GTTGGGGTG	0.167	strelka	upstream_gene_variant	MODIFIER	CG15543	intergenic	intergenic	intergenic
A373R13	4	1023579	T	'TA'	ATATTAAAA	INS	ATATTAAAA	0.0556	mutect2	5_prime_UTR_variant	MODIFIER	PlexA	5UTR	PlexA	FBgn0025741
A373R13	X	768220	CA	'C'	GAAACATCA	INS	GAAACATCA	0.222	mutect2	upstream_gene_variant	MODIFIER	RpL22	intergenic	intergenic	intergenic
A373R13	X	771992	GT	'G'	TTCGGTTTT	INS	TTCGGTTTT	0.138	strelka	intron_variant	MODIFIER	fz3	intron	fz3	FBgn0027343
A373R13	X	1181365	GAA	'G'	AAGCGAAAA	INS	AAGCGAAAA	0.0909	mutect2	3_prime_UTR_variant	MODIFIER	CG11379	3UTR	CG11379	FBgn0040362
A373R13	X	2772795	CT	'C'	TGGCCTTCT	INS	TGGCCTTCT	0.115	mutect2	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A373R13	X	3126349	GA	'G'	TTTCGAAAA	INS	TTTCGAAAA	0.429	strelka	upstream_gene_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A373R13	X	3692203	A	'AT'	TTTCATTTT	INS	AAAATGAAA	0.2	strelka	intron_variant	MODIFIER	Mnt	intron	Mnt	FBgn0023215
A373R13	X	4017699	CA	'C'	GAGCCAAAA	INS	GAGCCAAAA	0.231	strelka	intergenic_region	MODIFIER	CR43298-CR45482	intergenic	intergenic	intergenic
A373R13	X	4176065	GT	'G'	TTGCGTTTT	INS	TTGCGTTTT	0.2	strelka	intron_variant	MODIFIER	Fas2	intron	Fas2	FBgn0000635
A373R13	X	4853063	TTC	'T'	ATTTTTCTC	INS	ATTTTTCTC	0.211	strelka	intron_variant	MODIFIER	CG42594	intron	CG42594	FBgn0260971
A373R13	X	5596910	GT	'G'	TGGTGTTTT	INS	TGGTGTTTT	0.208	strelka	intron_variant	MODIFIER	Vsx1	intron	Vsx1	FBgn0263511
A373R13	X	6039983	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.167	strelka	upstream_gene_variant	MODIFIER	rux	intergenic	intergenic	intergenic
A373R13	X	6535987	CCAA	'C'	ACCACCAAT	INS	ACCACCAAT	0.087	mutect2	disruptive_inframe_deletion	MODERATE	dx	exon_2	dx	FBgn0000524
A373R13	X	7097073	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.263	strelka	upstream_gene_variant	MODIFIER	Sxl	intron	Sxl	FBgn0264270
A373R13	X	7104854	C	'CT'	TCGACTTTT	INS	TCGACTTTT	0.75	strelka	upstream_gene_variant	MODIFIER	CG4615	intergenic	intergenic	intergenic
A373R13	X	7939825	CACG	'C'	GAACCACGA	INS	GAACCACGA	0.105	mutect2	conservative_inframe_deletion	MODERATE	CG42593	exon_2	Ubr3	FBgn0260970
A373R13	X	8898025	G	'GT'	AACCGTTTT	INS	AAAACGGTT	0.143	strelka	upstream_gene_variant	MODIFIER	Rbm13	intron	Moe	FBgn0011661
A373R13	X	9006476	CA	'C'	GTACCAAAA	INS	GTACCAAAA	0.417	strelka	intron_variant	MODIFIER	rdgA	ncRNA	CR43836	FBgn0264384
A373R13	X	9032266	A	'AAC'	GTTAAAAAA	INS	TTTTTTAAC	0.182	mutect2	downstream_gene_variant	MODIFIER	rdgA	intron	Nost	FBgn0259734
A373R13	X	9540985	AAC	'A'	GACCAACAC	INS	GACCAACAC	0.148	strelka	intron_variant	MODIFIER	CG32700	intron	CG32700	FBgn0267253
A373R13	X	10415159	GCA	'G'	AATCGCACA	INS	AATCGCACA	0.107	strelka	upstream_gene_variant	MODIFIER	RabX2	intron	CG32683	FBgn0052683
A373R13	X	10619277	C	'CT'	AGCACTTTT	INS	AGCACTTTT	0.429	mutect2,strelka	downstream_gene_variant	MODIFIER	Rab9Db	intron	CG43347	FBgn0263072
A373R13	X	11081938	CTG	'C'	CTCTCTGTC	INS	CTCTCTGTC	0.333	mutect2	downstream_gene_variant	MODIFIER	CR44358	intron	sev	FBgn0003366
A373R13	X	11627908	CT	'C'	CTTTCTTTT	INS	CTTTCTTTT	0.731	strelka	intron_variant	MODIFIER	Ptp10D	intron	Ptp10D	FBgn0004370
A373R13	X	12742185	GCA	'G'	AGCCGCACA	INS	AGCCGCACA	0.107	strelka	upstream_gene_variant	MODIFIER	CR45623	intron	Smr	FBgn0265523
A373R13	X	12845439	GA	'G'	CGATGAAAT	INS	CGATGAAAT	0.115	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
A373R13	X	13024880	GAC	'G'	TGGCGACAC	INS	TGGCGACAC	0.185	strelka	downstream_gene_variant	MODIFIER	CG2209	intron	rad	FBgn0265597
A373R13	X	13114608	GA	'G'	ATTCGAAAA	INS	ATTCGAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG43313	intergenic	intergenic	intergenic
A373R13	X	13942302	TA	'T'	TATATAAAA	INS	TATATAAAA	0.212	strelka	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
A373R13	X	14568191	TA	'T'	AACTTAAAA	INS	AACTTAAAA	0.333	strelka	intergenic_region	MODIFIER	CR45521-CG14414	intergenic	intergenic	intergenic
A373R13	X	15279741	G	'GT'	TTTTGTTTT	INS	AAAACAAAA	0.227	strelka	intergenic_region	MODIFIER	CG9106-CR44663	intergenic	intergenic	intergenic
A373R13	X	15692201	GA	'G'	TGCAGAAAA	INS	TGCAGAAAA	0.111	strelka	upstream_gene_variant	MODIFIER	CG15599	exon_2	CR45523	FBgn0267079
A373R13	X	16144020	AG	'A'	CCAAAGGAC	INS	CCAAAGGAC	0.136	strelka	intron_variant	MODIFIER	disco-r	intron	disco-r	FBgn0042650
A373R13	X	16440609	AT	'A'	GCTGATTAA	INS	GCTGATTAA	0.13	strelka	upstream_gene_variant	MODIFIER	rngo	intron	CG9947	FBgn0030752
A373R13	X	18423865	GCA	'G'	CCCAGCACA	INS	CCCAGCACA	0.105	mutect2	intron_variant	MODIFIER	CG42323	intron	CG42323	FBgn0259223
A373R13	X	18625481	CA	'C'	AACCCAACT	INS	AACCCAACT	0.176	strelka	upstream_gene_variant	MODIFIER	CR44705	intron	wgn	FBgn0030941
A373R13	X	19213552	GA	'G'	GGCGGAGCT	INS	GGCGGAGCT	0.136	strelka	frameshift_variant	HIGH	Mur18B	exon	Mur18B	FBgn0030999
A373R13	X	19366290	G	'GT'	GTTTGTTTT	INS	AAAACAAAC	0.133	strelka	intron_variant	MODIFIER	kek5	intron	kek5	FBgn0031016
A373R13	X	19446281	GT	'G'	CCGGGTTTT	INS	CCGGGTTTT	0.238	strelka	5_prime_UTR_variant	MODIFIER	kek5	exon_4	kek5	FBgn0031016
A373R13	X	19637285	CCA	'C'	AAATCCACA	INS	AAATCCACA	0.111	strelka	5_prime_UTR_variant	MODIFIER	e(y)3	exon_1	e(y)3	FBgn0087008
A373R13	X	20127616	AACG	'A'	AAAAAACGA	INS	AAAAAACGA	0	consensus	downstream_gene_variant	MODIFIER	CG34331	intergenic	intergenic	intergenic
A373R13	X	20374137	CAGGA	'C'	ATGACAGGA	INS	ATGACAGGA	0.12	mutect2	downstream_gene_variant	MODIFIER	CG12679	intergenic	intergenic	intergenic
A373R13	X	21171365	AT	'A'	GATAATTGG	INS	GATAATTGG	0.176	strelka	intergenic_region	MODIFIER	CR32511-CR45506	intergenic	intergenic	intergenic
A373R13	Y	71076	CA	'C'	TCTGCAATT	INS	TCTGCAATT	0.235	strelka	intron_variant	MODIFIER	kl-5	intron	kl-5	FBgn0267433
A373R1	2L	5281	CA	'C'	CTGGCAAAT	INS	CTGGCAAAT	0.15	strelka	upstream_gene_variant	MODIFIER	CG11023	intergenic	intergenic	intergenic
A373R1	2L	543686	GCGTT	'G'	CGAGGCGTT	INS	CGAGGCGTT	0.111	mutect2	frameshift_variant	HIGH	Spp	exon_2	Spp	FBgn0031260
A373R1	2L	764505	CA	'C'	CATTCAATT	INS	CATTCAATT	0.19	strelka	downstream_gene_variant	MODIFIER	GABA-B-R3	intergenic	intergenic	intergenic
A373R1	2L	867348	GAC	'G'	CTCAGACAC	INS	CTCAGACAC	0.174	strelka	upstream_gene_variant	MODIFIER	aru	intron	aru	FBgn0029095
A373R1	2L	903134	A	'AGT'	TCCGAGTGC	INS	GCACTCGGA	0.0769	mutect2	upstream_gene_variant	MODIFIER	snRNA:U1:21D	intergenic	intergenic	intergenic
A373R1	2L	953160	T	'TG'	CTGGTGGGC	INS	CTGGTGGGC	0.125	strelka	frameshift_variant	HIGH	CG4341	exon_5	CG4341	FBgn0028481
A373R1	2L	961200	A	'AG'	TTACACAGC	INS	GCTGTGTAA	0	consensus	downstream_gene_variant	MODIFIER	CG4341	intergenic	intergenic	intergenic
A373R1	2L	961202	AG	'A'	ACACAGCAC	INS	ACACAGCAC	0	consensus	downstream_gene_variant	MODIFIER	CG4341	intergenic	intergenic	intergenic
A373R1	2L	1289901	G	'GAAGTTATTAAAAGACCAAAGGC'	TAGTGATGC	INS	GCATCACTA	0.308	strelka	intron_variant	MODIFIER	robo3	intron	robo3	FBgn0041097
A373R1	2L	1494402	GCAA	'G'	CTGGGCAAC	INS	CTGGGCAAC	0.0811	mutect2	conservative_inframe_deletion	MODERATE	CG33128	exon	CG33128	FBgn0053128
A373R1	2L	1736402	TA	'T'	AAACTACTT	INS	AAACTACTT	0.136	strelka	upstream_gene_variant	MODIFIER	CG17652	intron	CG17646	FBgn0264494
A373R1	2L	2038523	G	'GA'	AGGCGAAAT	INS	ATTTCGCCT	0.15	mutect2,strelka	upstream_gene_variant	MODIFIER	CG42296	intron	Su(dx)	FBgn0003557
A373R1	2L	2183734	GT	'G'	AAGTGTTTT	INS	AAGTGTTTT	0.235	strelka	upstream_gene_variant	MODIFIER	aop	exon_1	CR43751	FBgn0265017
A373R1	2L	2268963	ACTC	'A'	TATCACTCC	INS	TATCACTCC	0.222	mutect2	disruptive_inframe_deletion	MODERATE	CG17242	exon	CG17242	FBgn0250841
A373R1	2L	2374008	CCAATAGTTT	'C'	CTGGCCAAT	INS	CTGGCCAAT	0.08	mutect2	5_prime_UTR_variant	MODIFIER	CG3609	exon_1	CG3609	FBgn0031418
A373R1	2L	2424462	C	'CA'	CGCTCATGT	INS	CGCTCATGT	0.357	strelka	3_prime_UTR_variant	MODIFIER	CG9886	3UTR	CG9886	FBgn0031428
A373R1	2L	2941315	CA	'C'	AGCACACAA	INS	AGCACACAA	0.12	strelka	intron_variant	MODIFIER	lilli	intron	lilli	FBgn0041111
A373R1	2L	2950309	CCA	'C'	AACGCCACA	INS	AACGCCACA	0.0952	mutect2	frameshift_variant	HIGH	lilli	exon_8	lilli	FBgn0041111
A373R1	2L	3109948	GT	'G'	CAATGTTCC	INS	CAATGTTCC	0.122	mutect2	frameshift_variant	HIGH	PpD6	exon	PpD6	FBgn0005779
A373R1	2L	3222430	TTG	'T'	ATTTTTGTG	INS	ATTTTTGTG	0.12	strelka	intergenic_region	MODIFIER	CR45336-CR45337	intergenic	intergenic	intergenic
A373R1	2L	3299354	AT	'A'	GTACATTTT	INS	GTACATTTT	0.115	strelka	upstream_gene_variant	MODIFIER	CG9664	intron	CG9663	FBgn0031516
A373R1	2L	3757817	TTG	'T'	TCTCTTGTG	INS	TCTCTTGTG	0.227	strelka	5_prime_UTR_variant	MODIFIER	CG43707	5UTR	CG43707	FBgn0263846
A373R1	2L	4037101	CT	'C'	AGCACTTTT	INS	AGCACTTTT	0.167	strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
A373R1	2L	4161476	A	'AAC'	AAGGAAAAA	INS	TTTTTCCTT	0.188	strelka	downstream_gene_variant	MODIFIER	Or24a	intergenic	intergenic	intergenic
A373R1	2L	4373610	TC	'T'	AAACTCAAT	INS	AAACTCAAT	0.12	strelka	intron_variant	MODIFIER	Traf4	intron	Traf4	FBgn0026319
A373R1	2L	4430292	ACT	'A'	TCACACTCA	INS	TCACACTCA	0.286	strelka	upstream_gene_variant	MODIFIER	CG34177	intron	CG15431	FBgn0031602
A373R1	2L	4658692	GA	'G'	CAGAGACAG	INS	CAGAGACAG	0.136	mutect2	intergenic_region	MODIFIER	CG3355-CG11929	intergenic	intergenic	intergenic
A373R1	2L	4907427	CT	'C'	TACTCTTTT	INS	TACTCTTTT	0.263	strelka	upstream_gene_variant	MODIFIER	CG2837	intergenic	intergenic	intergenic
A373R1	2L	5351224	GC	'G'	CGAAGCCCA	INS	CGAAGCCCA	0.111	mutect2	intron_variant	MODIFIER	nompC	intron	nompC	FBgn0016920
A373R1	2L	5385103	AG	'A'	GATCAGGGT	INS	GATCAGGGT	0.125	strelka	upstream_gene_variant	MODIFIER	CR42850	intergenic	intergenic	intergenic
A373R1	2L	5593748	T	'TA'	TATTTAAAT	INS	TATTTAAAT	0.138	strelka	upstream_gene_variant	MODIFIER	CG18266	intergenic	intergenic	intergenic
A373R1	2L	5653585	T	'TC'	CAGATCCAT	INS	CAGATCCAT	0.158	strelka	intron_variant	MODIFIER	CG31646	intron	DIP-theta	FBgn0051646
A373R1	2L	5797457	TA	'T'	GTAATAAAT	INS	GTAATAAAT	0.133	strelka	upstream_gene_variant	MODIFIER	CG7239	intron	CG9171	FBgn0031738
A373R1	2L	6274715	TG	'T'	GAGCTGGCT	INS	GAGCTGGCT	0.125	strelka	downstream_gene_variant	MODIFIER	CR42735	intron	Ddr	FBgn0053531
A373R1	2L	6388339	T	'TC'	CGTATCCAC	INS	CGTATCCAC	0.136	strelka	upstream_gene_variant	MODIFIER	CG42370	intron	DIP-epsilon	FBgn0259714
A373R1	2L	6403975	AACC	'A'	CCCAAACCA	INS	CCCAAACCA	0.13	strelka	intron_variant	MODIFIER	CG42368	intron	DIP-epsilon	FBgn0259714
A373R1	2L	6422640	GT	'G'	CGGCGTTGA	INS	CGGCGTTGA	0.16	strelka	upstream_gene_variant	MODIFIER	Fic	intron	Tig	FBgn0011722
A373R1	2L	6693130	GT	'G'	ATGTGTGAA	INS	ATGTGTGAA	0.138	strelka	upstream_gene_variant	MODIFIER	Tsp	intron	Tsp	FBgn0031850
A373R1	2L	6737549	CA	'C'	ATCACATCA	INS	ATCACATCA	0.136	strelka	upstream_gene_variant	MODIFIER	CG11221	intron	TTLL3A	FBgn0031854
A373R1	2L	7124584	C	'CA'	AGAGCCGTA	INS	AGAGCCGTA	0.24	mutect2	intron_variant	MODIFIER	Pvf3	intron	Pvf3	FBgn0085407
A373R1	2L	7214825	TAA	'T'	TAAATAAAG	INS	TAAATAAAG	0.154	mutect2	downstream_gene_variant	MODIFIER	CG13784	intron	CG13784	FBgn0031897
A373R1	2L	7600439	GT	'G'	ACTAGTTTT	INS	ACTAGTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	CR45370	intergenic	intergenic	intergenic
A373R1	2L	7655479	GCA	'G'	ACCCGCACA	INS	ACCCGCACA	0.111	strelka	intron_variant	MODIFIER	Slob	intron	Slob	FBgn0264087
A373R1	2L	7671174	CG	'C'	CATTCGGGG	INS	CATTCGGGG	0.103	strelka	intron_variant	MODIFIER	Slob	intron	Myo28B1	FBgn0040299
A373R1	2L	7716996	TA	'T'	TTAATATAT	INS	TTAATATAT	0.0625	mutect2	3_prime_UTR_variant	MODIFIER	CG13793	3UTR	CG13793	FBgn0031935
A373R1	2L	7792410	T	'TG'	CATGTGGCT	INS	CATGTGGCT	0.138	strelka	frameshift_variant	HIGH	LKR	exon_6	LKRSDH	FBgn0025687
A373R1	2L	7807858	CCT	'C'	ACACCCTAA	INS	ACACCCTAA	0.129	strelka	upstream_gene_variant	MODIFIER	LanB1	intron	cdc14	FBgn0031952
A373R1	2L	7830140	TTC	'T'	TCGATTCTC	INS	TCGATTCTC	0	consensus	upstream_gene_variant	MODIFIER	Rack1	intron	mts	FBgn0004177
A373R1	2L	8141355	G	'GT'	TAACGATTT	INS	AAATCGTTA	0.192	strelka	upstream_gene_variant	MODIFIER	CG43394	intron	PAPLA1	FBgn0031990
A373R1	2L	8733299	GT	'G'	AAATGTCCA	INS	AAATGTCCA	0.138	strelka	intron_variant	MODIFIER	raw	intron	raw	FBgn0003209
A373R1	2L	9181087	A	'AATAAAATAAGCCCC'	ATTAAATTC	INS	GAATTTAAT	0.263	strelka	intron_variant	MODIFIER	tai	intron	tai	FBgn0041092
A373R1	2L	9328235	TCG	'T'	CACATCGCA	INS	CACATCGCA	0.148	mutect2,strelka	frameshift_variant	HIGH	CG17005	exon_2	CG17005	FBgn0032109
A373R1	2L	9559960	GA	'G'	ATGGGAAAA	INS	ATGGGAAAA	0.12	strelka	intron_variant	MODIFIER	jp	intron	jp	FBgn0032129
A373R1	2L	9894539	GAGA	'G'	ATCAGAGAA	INS	ATCAGAGAA	0.0909	mutect2	upstream_gene_variant	MODIFIER	CG34183	snoRNA	snoRNA:Me18S-G1620	FBgn0063389
A373R1	2L	9938353	GC	'G'	GGCAGCCAC	INS	GGCAGCCAC	0.12	strelka	frameshift_variant	HIGH	Apf	exon	Apf	FBgn0051713
A373R1	2L	9945846	A	'AG'	GGAAAGGTA	INS	TACCTTTCC	0.103	strelka	upstream_gene_variant	MODIFIER	CR45949	intron	CG5853	FBgn0032167
A373R1	2L	9965510	TG	'T'	TACGTGGGC	INS	TACGTGGGC	0.16	strelka	frameshift_variant	HIGH	Dref	exon_2	Dref	FBgn0015664
A373R1	2L	9986819	CA	'C'	CCTTCATGT	INS	CCTTCATGT	0.114	strelka	frameshift_variant	HIGH	bib	exon_2	bib	FBgn0000180
A373R1	2L	10027264	AT	'A'	CCGTATTTT	INS	CCGTATTTT	0.0976	strelka	frameshift_variant	HIGH	CG13127	exon	CG13127	FBgn0032176
A373R1	2L	10253852	CT	'C'	AGCCCTACT	INS	AGCCCTACT	0.2	strelka	frameshift_variant	HIGH	Ror	exon_6	Ror	FBgn0010407
A373R1	2L	10932066	TTG	'T'	CAATTTGTG	INS	CAATTTGTG	0.16	strelka	upstream_gene_variant	MODIFIER	CG14072	intron	dpr2	FBgn0261871
A373R1	2L	11023835	GTT	'G'	TGGTGTTGT	INS	TGGTGTTGT	0	consensus	downstream_gene_variant	MODIFIER	Samuel	intron	Samuel	FBgn0032330
A373R1	2L	11038711	AT	'A'	ATTGATTTC	INS	ATTGATTTC	0.136	strelka	downstream_gene_variant	MODIFIER	CG18666	intron	Samuel	FBgn0032330
A373R1	2L	11299585	TA	'T'	GAAATATGG	INS	GAAATATGG	0.13	strelka	intergenic_region	MODIFIER	CR43409-CR43721	intergenic	intergenic	intergenic
A373R1	2L	11384639	CAT	'C'	GAGCCATAT	INS	GAGCCATAT	0.143	mutect2,strelka	downstream_gene_variant	MODIFIER	CR43681	intergenic	intergenic	intergenic
A373R1	2L	11420777	TC	'T'	GTCTTCCCA	INS	GTCTTCCCA	0.138	strelka	intergenic_region	MODIFIER	CR43681-salm	intergenic	intergenic	intergenic
A373R1	2L	11506572	GA	'G'	CCACGATTA	INS	CCACGATTA	0.111	mutect2,strelka	frameshift_variant	HIGH	spz4	exon_2	spz4	FBgn0032362
A373R1	2L	11603623	CT	'C'	CACACTTTT	INS	CACACTTTT	0.143	strelka	intron_variant	MODIFIER	kek2	intron	kek2	FBgn0015400
A373R1	2L	11611734	TC	'T'	TAGCTCGTC	INS	TAGCTCGTC	0.138	strelka	5_prime_UTR_variant	MODIFIER	spag4	5UTR	spag4	FBgn0032368
A373R1	2L	11908081	T	'TC'	CATTTCCAG	INS	CATTTCCAG	0.176	mutect2,strelka	intron_variant	MODIFIER	Pde1c	intron	Pde1c	FBgn0264815
A373R1	2L	11950678	T	'TA'	TATATTTCT	INS	TATATTTCT	0.75	strelka	downstream_gene_variant	MODIFIER	Cry	intergenic	intergenic	intergenic
A373R1	2L	11970988	C	'CCT'	GGGCCCTCT	INS	GGGCCCTCT	0.161	strelka	non_coding_transcript_exon_variant	MODIFIER	CR43314	exon_1	CR43314	FBgn0263019
A373R1	2L	12363729	CT	'C'	GTTTCTCCT	INS	GTTTCTCCT	0.107	mutect2	upstream_gene_variant	MODIFIER	bru-2	intron	bru2	FBgn0262475
A373R1	2L	12514215	G	'GCAGAGTGGCACCAA'	ATAAGCAAA	INS	TTTGCTTAT	0.391	strelka	intron_variant	MODIFIER	bun	intron	bun	FBgn0259176
A373R1	2L	12612853	CA	'C'	CACACAAAA	INS	CACACAAAA	0.188	mutect2	upstream_gene_variant	MODIFIER	Ref2	intron	Ref2	FBgn0032439
A373R1	2L	13167961	AGTTGCGATC	'A'	CCTAAGTTG	INS	CCTAAGTTG	0.087	mutect2	conservative_inframe_deletion	MODERATE	Sir2	exon	Sirt1	FBgn0024291
A373R1	2L	13344532	AT	'A'	GAGCATTTT	INS	GAGCATTTT	0.138	strelka	upstream_gene_variant	MODIFIER	CG16826	intergenic	intergenic	intergenic
A373R1	2L	14167809	AGG	'A'	GGCTAGGGG	INS	GGCTAGGGG	0.125	strelka	upstream_gene_variant	MODIFIER	CG43332	intron	CG43333	FBgn0263038
A373R1	2L	14476854	TA	'T'	GACCTACAA	INS	GACCTACAA	0.115	strelka	intergenic_region	MODIFIER	CR44730-CR44731	intergenic	intergenic	intergenic
A373R1	2L	14493977	TA	'T'	CGTATAAAA	INS	CGTATAAAA	0.3	mutect2	3_prime_UTR_variant	MODIFIER	noc	3UTR	noc	FBgn0005771
A373R1	2L	14811069	CTA	'C'	CAAACTATT	INS	CAAACTATT	0.13	mutect2,strelka	frameshift_variant	HIGH	CG33309	exon	CG33309	FBgn0053309
A373R1	2L	15594912	CT	'C'	AAAACTTTT	INS	AAAACTTTT	0.114	strelka	intergenic_region	MODIFIER	kek3-CR44865	intergenic	intergenic	intergenic
A373R1	2L	15756315	T	'TTAC'	ACAATTACC	INS	ACAATTACC	0.0816	strelka	3_prime_UTR_variant	MODIFIER	Gli	exon_8	Gli	FBgn0001987
A373R1	2L	16558119	G	'GA'	GCCTGAAAA	INS	TTTTCAGGC	0.138	strelka	frameshift_variant&start_lost	HIGH	CG42389	5UTR	CG42389	FBgn0259735
A373R1	2L	17093479	TC	'T'	CTCCTCCAG	INS	CTCCTCCAG	0.125	strelka	downstream_gene_variant	MODIFIER	CG12620	intergenic	intergenic	intergenic
A373R1	2L	17343646	TTG	'T'	GTGTTTGTG	INS	GTGTTTGTG	0.125	strelka	intergenic_region	MODIFIER	CG45691-CR43239	intergenic	intergenic	intergenic
A373R1	2L	17719423	ACCCTTGT	'A'	GTTCACCCT	INS	GTTCACCCT	0.1	mutect2	frameshift_variant	HIGH	CadN	exon_5	CadN	FBgn0015609
A373R1	2L	17799391	TTC	'T'	GTACTTCTT	INS	GTACTTCTT	0.111	mutect2,strelka	frameshift_variant	HIGH	CadN2	exon_9	CadN2	FBgn0262018
A373R1	2L	17948288	A	'AAC'	CATTAACGG	INS	CCGTTAATG	0.0952	mutect2	downstream_gene_variant	MODIFIER	CR44397	exon_2	CR44398	FBgn0265548
A373R1	2L	17995620	A	'AT'	CATTATTGT	INS	ACAATAATG	0.12	mutect2	upstream_gene_variant	MODIFIER	CR44767	intergenic	intergenic	intergenic
A373R1	2L	18088167	GT	'G'	GTGTGTTTT	INS	GTGTGTTTT	0.158	strelka	downstream_gene_variant	MODIFIER	ninaD	intergenic	intergenic	intergenic
A373R1	2L	18644409	CTA	'C'	TTTTCTATA	INS	TTTTCTATA	0.103	strelka	intron_variant	MODIFIER	MESR3	intron	MESR3	FBgn0032694
A373R1	2L	18859828	TTTA	'T'	TGCATTTAT	INS	TGCATTTAT	0.0556	mutect2	3_prime_UTR_variant	MODIFIER	tup	3UTR	tup	FBgn0003896
A373R1	2L	19020828	GA	'G'	AGAGGAAAA	INS	AGAGGAAAA	0.111	strelka	upstream_gene_variant	MODIFIER	CR44184	intergenic	intergenic	intergenic
A373R1	2L	20052384	AG	'A'	AGACAGATC	INS	AGACAGATC	0.148	strelka	intron_variant	MODIFIER	sNPF	intron	sNPF	FBgn0032840
A373R1	2L	20226036	GGT	'G'	AGGGGGTGT	INS	AGGGGGTGT	0.25	strelka	intergenic_region	MODIFIER	CG10651-CR40341	intergenic	intergenic	intergenic
A373R1	2L	20365188	CA	'C'	CGCTCAAAA	INS	CGCTCAAAA	0.111	strelka	3_prime_UTR_variant	MODIFIER	RtGEF	3UTR	RtGEF	FBgn0015803
A373R1	2L	20697696	T	'TA'	ACATTAAAA	INS	ACATTAAAA	0.154	strelka	intron_variant	MODIFIER	Hr38	intron	Hr38	FBgn0014859
A373R1	2L	21086445	GA	'G'	TCTAGAAAG	INS	TCTAGAAAG	0.257	mutect2	5_prime_UTR_variant	MODIFIER	CG33509	5UTR	CG33509	FBgn0053509
A373R1	2L	21790838	CA	'C'	AAGGCAAAA	INS	AAGGCAAAA	0.136	strelka	intron_variant	MODIFIER	CG31612	intron	CG31612	FBgn0051612
A373R1	2L	22138218	ACG	'A'	AGTAACGAG	INS	AGTAACGAG	0.121	strelka	upstream_gene_variant	MODIFIER	CG42748	intron	CG42748	FBgn0261802
A373R1	2L	22341196	GGT	'G'	CTGTGGTGT	INS	CTGTGGTGT	0.12	strelka	intron_variant	MODIFIER	CG17018	pseudogene	CR43359	FBgn0263091
A373R1	2L	22673061	AG	'A'	TGATAGGCA	INS	TGATAGGCA	0.19	strelka	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
A373R1	2L	22692280	ATT	'A'	CTAAATTTT	INS	CTAAATTTT	0.214	mutect2,strelka	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
A373R1	2R	503075	AT	'A'	GACAATTAG	INS	GACAATTAG	0.0784	mutect2,strelka	intron_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
A373R1	2R	1756658	C	'CA'	TTAGCCACC	INS	TTAGCCACC	0.3	mutect2	intron_variant	MODIFIER	CG41520	intron	CG41520	FBgn0087011
A373R1	2R	2184218	AT	'A'	GACCATATG	INS	GACCATATG	0.129	strelka	intron_variant	MODIFIER	CG17684	intron	CG17684	FBgn0263780
A373R1	2R	3010728	TGATAATATATGTATACCATGCTTGGTGATCGC	'T'	AACATGATA	INS	AACATGATA	0.235	strelka	intergenic_region	MODIFIER	Scp1-CG42596	intergenic	intergenic	intergenic
A373R1	2R	3114803	CCAAT	'C'	TAGGCCAAT	INS	TAGGCCAAT	0.12	mutect2	intron_variant	MODIFIER	CG42596	intron	dpr21	FBgn0260995
A373R1	2R	4547646	GA	'G'	TCCTGAAAT	INS	TCCTGAAAT	0.148	strelka	intron_variant	MODIFIER	Stlk	intron	Stlk	FBgn0046692
A373R1	2R	4777569	GACAAAACCATAGAAAGT	'G'	TATTGACAA	INS	TATTGACAA	0.381	strelka	downstream_gene_variant	MODIFIER	CR43281	intergenic	intergenic	intergenic
A373R1	2R	5070343	AT	'A'	TTTTATAAA	INS	TTTTATAAA	0.167	strelka	upstream_gene_variant	MODIFIER	TpnC41C	intergenic	intergenic	intergenic
A373R1	2R	5322008	A	'AAC'	CCACAACTC	INS	GAGTTGTGG	0.087	mutect2	intron_variant	MODIFIER	sxc	intron	sxc	FBgn0261403
A373R1	2R	5535146	CG	'C'	GTAGCGAGC	INS	GTAGCGAGC	0.333	strelka	intron_variant	MODIFIER	CG30438	intron	CG30438	FBgn0050438
A373R1	2R	5758149	C	'CTG'	ATCTCTGTG	INS	ATCTCTGTG	0.12	strelka	frameshift_variant	HIGH	CG7791	exon	CG7791	FBgn0033038
A373R1	2R	6541801	T	'TCA'	GCGGTCACT	INS	GCGGTCACT	0.121	strelka	intron_variant	MODIFIER	jing	intron	jing	FBgn0086655
A373R1	2R	6593666	AC	'A'	TAGAACCAC	INS	TAGAACCAC	0.107	strelka	intron_variant	MODIFIER	jing	intron	jing	FBgn0086655
A373R1	2R	7280231	CCA	'C'	CAGCCCACT	INS	CAGCCCACT	0.211	mutect2,strelka	frameshift_variant	HIGH	Incenp	exon_4	Incenp	FBgn0260991
A373R1	2R	7664680	G	'GC'	CGGTGCCTA	INS	TAGGCACCG	0.12	strelka	frameshift_variant	HIGH	CG2065	exon_4	CG2065	FBgn0033204
A373R1	2R	7735525	T	'TG'	TGTGTGTTT	INS	TGTGTGTTT	0.1	mutect2	5_prime_UTR_variant	MODIFIER	CG18812	exon_1	CG18812	FBgn0042135
A373R1	2R	7903821	CA	'C'	AATGCAAAT	INS	AATGCAAAT	0.125	strelka	intron_variant	MODIFIER	CG30377	intron	CG30377	FBgn0050377
A373R1	2R	8101497	G	'GC'	CTTTGCCTA	INS	TAGGCAAAG	0.174	strelka	frameshift_variant	HIGH	CG11210	exon	CG11210	FBgn0033259
A373R1	2R	8616410	CG	'C'	CATTCGGGC	INS	CATTCGGGC	0.107	strelka	frameshift_variant	HIGH	Cirl	5UTR	Cirl	FBgn0033313
A373R1	2R	8805031	GT	'G'	GGTAGTCCG	INS	GGTAGTCCG	0.115	strelka	intron_variant	MODIFIER	sns	intron	sns	FBgn0024189
A373R1	2R	9714852	ATT	'A'	TTTGATTTG	INS	TTTGATTTG	0.115	mutect2,strelka	upstream_gene_variant	MODIFIER	CR44292	intron	dap	FBgn0010316
A373R1	2R	9818063	C	'CA'	AGAGCAAAG	INS	AGAGCAAAG	0.242	mutect2	frameshift_variant	HIGH	lectin-46Ca	exon	lectin-46Ca	FBgn0040093
A373R1	2R	10796415	A	'AAC'	GGGGAACCC	INS	GGGTTCCCC	0	consensus	downstream_gene_variant	MODIFIER	mthl13	intron	CG33144	FBgn0053144
A373R1	2R	10912176	G	'GT'	TCAAGTTTT	INS	AAAACTTGA	0.118	strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
A373R1	2R	11207806	TA	'T'	ACTATATGG	INS	ACTATATGG	0.103	strelka	intron_variant	MODIFIER	shn	intron	shn	FBgn0003396
A373R1	2R	11265321	TGTA	'T'	TGTCTGTAG	INS	TGTCTGTAG	0.176	mutect2,strelka	disruptive_inframe_deletion	MODERATE	Cpr47Ee	exon_1	Cpr47Ee	FBgn0033602
A373R1	2R	11386748	G	'GT'	TTTAGTTTT	INS	AAAACTAAA	0.105	strelka	frameshift_variant	HIGH	sprt	exon_3	sprt	FBgn0082585
A373R1	2R	11405805	TGAG	'T'	GCGATGAGG	INS	GCGATGAGG	0.0952	mutect2	conservative_inframe_deletion	MODERATE	CG7759	exon_1	Smyd4-3	FBgn0033633
A373R1	2R	11592861	TG	'T'	TTTTTGTTT	INS	TTTTTGTTT	0.25	strelka	upstream_gene_variant	MODIFIER	snoRNA:Psi28S-1936	intron	tou	FBgn0033636
A373R1	2R	11696009	TA	'T'	CCGATATCG	INS	CCGATATCG	0.107	strelka	3_prime_UTR_variant	MODIFIER	CG13197	3UTR	CG13197	FBgn0062449
A373R1	2R	11854449	CGATCA	'C'	AAGTCGATC	INS	AAGTCGATC	0.0909	mutect2	frameshift_variant	HIGH	Mtor	exon_2	Mtor	FBgn0013756
A373R1	2R	11983604	AG	'A'	CACGAGCAA	INS	CACGAGCAA	0.107	strelka	frameshift_variant	HIGH	RnrS	exon	RnrS	FBgn0011704
A373R1	2R	12386872	AT	'A'	GAGAATTTT	INS	GAGAATTTT	0.182	strelka	5_prime_UTR_variant	MODIFIER	Cpr49Ac	5UTR	Cpr49Ac	FBgn0033725
A373R1	2R	12534599	G	'GTTT'	CTTAGTTTT	INS	AAAACTAAG	0.429	strelka	intron_variant	MODIFIER	fra	intron	fra	FBgn0011592
A373R1	2R	12754042	GGT	'G'	ACACGGTGA	INS	ACACGGTGA	0.308	mutect2	frameshift_variant	HIGH	Taz	exon_3	Taz	FBgn0026619
A373R1	2R	12801102	C	'CTCCCCT'	GGCCCCCCC	INS	GGCCCCCCC	0.273	strelka	3_prime_UTR_variant	MODIFIER	sca	3UTR	sca	FBgn0003326
A373R1	2R	12981867	T	'TAC'	ATAATACTT	INS	ATAATACTT	0.182	mutect2	upstream_gene_variant	MODIFIER	Psc	intergenic	intergenic	intergenic
A373R1	2R	13197111	TA	'T'	CTAGTAAAA	INS	CTAGTAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	Aats-val	intron	Kdm4B	FBgn0053182
A373R1	2R	14044315	CACACACAGAG	'C'	CACACACAC	INS	CACACACAC	0.214	mutect2	intron_variant	MODIFIER	mam	intron	mam	FBgn0002643
A373R1	2R	14393204	TTA	'T'	ATTATTAGG	INS	ATTATTAGG	0.158	mutect2,strelka	downstream_gene_variant	MODIFIER	CG10104	intergenic	intergenic	intergenic
A373R1	2R	14486457	T	'TA'	GCAGTAAAA	INS	GCAGTAAAA	0.133	strelka	intron_variant	MODIFIER	L	intron	PRAS40	FBgn0267824
A373R1	2R	14532843	T	'TTGA'	TAATTCTAT	INS	TAATTCTAT	0.133	mutect2	intron_variant	MODIFIER	ttv	intron	ttv	FBgn0265974
A373R1	2R	14581952	GT	'G'	CTTAGTTGG	INS	CTTAGTTGG	0.143	strelka	intron_variant	MODIFIER	ttv	intron	ttv	FBgn0265974
A373R1	2R	14941769	AC	'A'	ACTAACCCA	INS	ACTAACCCA	0.148	strelka	upstream_gene_variant	MODIFIER	CG10257	intergenic	intergenic	intergenic
A373R1	2R	14991478	GA	'G'	CCACGAAAA	INS	CCACGAAAA	0.16	strelka	upstream_gene_variant	MODIFIER	CR43830	intron	CG7639	FBgn0033989
A373R1	2R	15074732	CGA	'C'	TTTGCGAGC	INS	TTTGCGAGC	0.148	strelka	intergenic_region	MODIFIER	CG33467-CR44457	intergenic	intergenic	intergenic
A373R1	2R	15453875	GTAACCACATA	'G'	CATAGTAAC	INS	CATAGTAAC	0.133	mutect2	intron_variant	MODIFIER	CG43729	intron	CG43729	FBgn0263980
A373R1	2R	15570424	GCA	'G'	CCCAGCACA	INS	CCCAGCACA	0.114	strelka	frameshift_variant	HIGH	Cdk5	exon_3	Cdk5	FBgn0013762
A373R1	2R	15591283	TG	'T'	ACGCTGCAG	INS	ACGCTGCAG	0.231	mutect2,strelka	intergenic_region	MODIFIER	CG8204-CG42524	intergenic	intergenic	intergenic
A373R1	2R	16091298	AC	'A'	TTATACCCC	INS	TTATACCCC	0.108	mutect2	intron_variant	MODIFIER	Dg	intron	Dg	FBgn0034072
A373R1	2R	16478448	C	'CG'	TCGACGGCA	INS	TCGACGGCA	0.19	mutect2,strelka	intergenic_region	MODIFIER	CheB53b-CG15712	intergenic	intergenic	intergenic
A373R1	2R	16519668	CTTATTTATTTTCAACTCTCTTGGTATATAGTTTTTA	'C'	ATTTCTTAT	INS	ATTTCTTAT	0.4	strelka	intron_variant	MODIFIER	Sema-2a	intron	Sema-2a	FBgn0011260
A373R1	2R	16798841	T	'TA'	TCCATAAGA	INS	TCCATAAGA	0.125	strelka	upstream_gene_variant	MODIFIER	CG15615	intergenic	intergenic	intergenic
A373R1	2R	16921715	A	'AT'	AGCGATTTT	INS	AAAATCGCT	0.25	strelka	upstream_gene_variant	MODIFIER	Pkc53E	intergenic	intergenic	intergenic
A373R1	2R	16973900	TA	'T'	TTGATAAAA	INS	TTGATAAAA	0.107	strelka	upstream_gene_variant	MODIFIER	Cbp53E	intergenic	intergenic	intergenic
A373R1	2R	18319992	CCGT	'C'	CACGCCGTC	INS	CACGCCGTC	0.174	mutect2,strelka	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
A373R1	2R	18347030	AAC	'A'	ATGCAACAA	INS	ATGCAACAA	0.136	mutect2	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
A373R1	2R	18746808	TAG	'T'	CAGCTAGAG	INS	CAGCTAGAG	0.111	mutect2	upstream_gene_variant	MODIFIER	CG18609	intron	Hs3st-A	FBgn0053147
A373R1	2R	18816398	TC	'T'	CTCCTCCTA	INS	CTCCTCCTA	0.114	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG15096	exon_1	CR46234	FBgn0267954
A373R1	2R	19214922	AT	'A'	TCGAATCCT	INS	TCGAATCCT	0.182	strelka	intron_variant	MODIFIER	hppy	intron	hppy	FBgn0263395
A373R1	2R	19423599	CT	'C'	GGTACTTTT	INS	GGTACTTTT	0.143	strelka	5_prime_UTR_variant	MODIFIER	hts	exon_2	hts	FBgn0263391
A373R1	2R	19648686	CAT	'C'	AAATCATAT	INS	AAATCATAT	0.13	mutect2,strelka	upstream_gene_variant	MODIFIER	CG15905	intergenic	intergenic	intergenic
A373R1	2R	19691139	G	'GC'	GAGTGCCTC	INS	GAGGCACTC	0.176	mutect2,strelka	upstream_gene_variant	MODIFIER	CG15128	intergenic	intergenic	intergenic
A373R1	2R	19722626	T	'TA'	AGGCTAAAA	INS	AGGCTAAAA	0.105	strelka	upstream_gene_variant	MODIFIER	tRNA:CR30218	intergenic	intergenic	intergenic
A373R1	2R	19767151	AT	'A'	TATGATTAA	INS	TATGATTAA	0.161	strelka	upstream_gene_variant	MODIFIER	5SrRNA:CR33364	intergenic	intergenic	intergenic
A373R1	2R	19982274	TG	'T'	TTTTTGACT	INS	TTTTTGACT	0.0882	strelka	intron_variant	MODIFIER	CG8654	intron	CG8654	FBgn0034479
A373R1	2R	20123563	GCA	'G'	GTGCGCATA	INS	GTGCGCATA	0.235	mutect2,strelka	intergenic_region	MODIFIER	18w-CR44634	intergenic	intergenic	intergenic
A373R1	2R	21155868	CA	'C'	GGAACATAA	INS	GGAACATAA	0.111	strelka	frameshift_variant	HIGH	CG30389	exon_3	CG30389	FBgn0050389
A373R1	2R	22381867	AC	'A'	TAGAACCAA	INS	TAGAACCAA	0.15	strelka	frameshift_variant	HIGH	wrapper	exon_3	wrapper	FBgn0025878
A373R1	2R	22785686	CT	'C'	TAGCCTTTT	INS	TAGCCTTTT	0.158	strelka	downstream_gene_variant	MODIFIER	CG30270	intron	CG42260	FBgn0259145
A373R1	2R	22805652	T	'TAAAACGATC'	TGATTGCTC	INS	TGATTGCTC	0.286	strelka	upstream_gene_variant	MODIFIER	stl	intron	CycB	FBgn0000405
A373R1	2R	22912637	CT	'C'	TAATCTTCC	INS	TAATCTTCC	0.111	strelka	frameshift_variant	HIGH	nahoda	exon_6	nahoda	FBgn0034797
A373R1	2R	23045475	CA	'C'	TATACAAAT	INS	TATACAAAT	0.13	strelka	upstream_gene_variant	MODIFIER	CG42741	intron	twi	FBgn0003900
A373R1	2R	23099760	T	'TAC'	TAAATACAC	INS	TAAATACAC	0.174	strelka	downstream_gene_variant	MODIFIER	RpL37b	intergenic	intergenic	intergenic
A373R1	2R	23395350	AC	'A'	CCCCACGGA	INS	CCCCACGGA	0.13	strelka	5_prime_UTR_variant	MODIFIER	CG3530	5UTR	CG3530	FBgn0028497
A373R1	2R	23453877	GAC	'G'	AAAGGACTG	INS	AAAGGACTG	0.15	mutect2,strelka	downstream_gene_variant	MODIFIER	SkpF	intron	CG43795	FBgn0264339
A373R1	2R	23813384	CT	'C'	AACACTACG	INS	AACACTACG	0.12	strelka	frameshift_variant	HIGH	CG4797	exon_1	CR44807	FBgn0266042
A373R1	2R	23901272	T	'TG'	GGATTGGGC	INS	GGATTGGGC	0.143	strelka	frameshift_variant	HIGH	Lpt	exon_5	Lpt	FBgn0263667
A373R1	2R	24561772	CCGA	'C'	TTATCCGAA	INS	TTATCCGAA	0.125	mutect2	5_prime_UTR_variant	MODIFIER	CG11414	5UTR	CG11414	FBgn0035024
A373R1	2R	24740845	AGCAG	'A'	ACCAAGCAG	INS	ACCAAGCAG	0.189	strelka	upstream_gene_variant	MODIFIER	Mid1	intergenic	intergenic	intergenic
A373R1	2R	24762758	ATC	'A'	GCTGATCTC	INS	GCTGATCTC	0.1	mutect2	frameshift_variant	HIGH	CG12848	exon	CG12848	FBgn0040666
A373R1	2R	24908472	CA	'C'	GACGCAAAT	INS	GACGCAAAT	0.2	mutect2,strelka	splice_region_variant&intron_variant	LOW	NaCP60E	exon_13	NaCP60E	FBgn0085434
A373R1	2R	24916333	TA	'T'	TCCGTAAAT	INS	TCCGTAAAT	0.13	mutect2	intron_variant	MODIFIER	NaCP60E	intron	NaCP60E	FBgn0085434
A373R1	2R	25039418	AT	'A'	ACAGATTTC	INS	ACAGATTTC	0.115	strelka	3_prime_UTR_variant	MODIFIER	Nplp1	3UTR	Nplp1	FBgn0035092
A373R1	3L	256679	CT	'C'	GTTACTTTG	INS	GTTACTTTG	0.115	strelka	frameshift_variant	HIGH	DIP2	exon_3	DIP2	FBgn0024806
A373R1	3L	272452	TA	'T'	GCTTTAAAA	INS	GCTTTAAAA	0.154	strelka	frameshift_variant	HIGH	CG32845	exon	CG32845	FBgn0052845
A373R1	3L	276107	CG	'C'	ACGGCGGAG	INS	ACGGCGGAG	0.2	mutect2,strelka	frameshift_variant	HIGH	ttm2	exon	ttm2	FBgn0035124
A373R1	3L	356932	CTT	'C'	GGACCTTAC	INS	GGACCTTAC	0.12	mutect2	frameshift_variant	HIGH	CG1231	exon	CG1231	FBgn0035134
A373R1	3L	368128	T	'TGG'	CAGTTGGTG	INS	CAGTTGGTG	0.08	mutect2	frameshift_variant	HIGH	trh	exon	trh	FBgn0262139
A373R1	3L	628755	TA	'T'	ACAATAAAA	INS	ACAATAAAA	0.375	strelka	non_coding_transcript_exon_variant	MODIFIER	CR43334	exon_1	CR43334	FBgn0263039
A373R1	3L	685286	CTG	'C'	CCGCCTGTG	INS	CCGCCTGTG	0.167	strelka	5_prime_UTR_variant	MODIFIER	ebd1	5UTR	ebd1	FBgn0035153
A373R1	3L	731367	GGC	'G'	AGGGGGCGG	INS	AGGGGGCGG	0.158	strelka	intergenic_region	MODIFIER	CR45411-CR43785	intergenic	intergenic	intergenic
A373R1	3L	762041	GGCT	'G'	CTGCGGCTG	INS	CTGCGGCTG	0.087	mutect2	intergenic_region	MODIFIER	hng3-tRNA:CR32480	intergenic	intergenic	intergenic
A373R1	3L	1137998	GCA	'G'	CCTCGCACA	INS	CCTCGCACA	0.139	strelka	downstream_gene_variant	MODIFIER	bab2	intergenic	intergenic	intergenic
A373R1	3L	1423067	AG	'A'	GAGCAGGTC	INS	GAGCAGGTC	0.133	strelka	frameshift_variant	HIGH	CG9173	exon	CG9173	FBgn0035218
A373R1	3L	1453206	T	'TCC'	TCTGTCCCG	INS	TCTGTCCCG	0.158	strelka	intron_variant	MODIFIER	Ptp61F	intron	Ptp61F	FBgn0267487
A373R1	3L	1810728	AGT	'A'	GTGCAGTGT	INS	GTGCAGTGT	0.211	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45686	intron	GV1	FBgn0027790
A373R1	3L	2160283	CGT	'C'	ACTGCGTAA	INS	ACTGCGTAA	0.171	mutect2	splice_region_variant&intron_variant	LOW	CG15822	intron	CG15822	FBgn0035308
A373R1	3L	2604836	CG	'C'	GAGGCGCTG	INS	GAGGCGCTG	0.12	mutect2	downstream_gene_variant	MODIFIER	CG16985	intron	Pxn	FBgn0011828
A373R1	3L	3014439	C	'CG'	GATGCGAAA	INS	GATGCGAAA	0.16	mutect2,strelka	downstream_gene_variant	MODIFIER	FMRFaR	intergenic	intergenic	intergenic
A373R1	3L	3170136	AC	'A'	GATTACCAG	INS	GATTACCAG	0.133	strelka	frameshift_variant	HIGH	CG32281	exon	CG32281	FBgn0052281
A373R1	3L	3554004	A	'AT'	TTTTATTTT	INS	AAAATAAAA	0.158	mutect2	downstream_gene_variant	MODIFIER	CR45820	intron	Eip63E	FBgn0005640
A373R1	3L	3590478	CT	'C'	TGCACTTTT	INS	TGCACTTTT	0.261	strelka	upstream_gene_variant	MODIFIER	snRNA:U7	intron	Eip63E	FBgn0005640
A373R1	3L	3590478	C	'CT'	TGCACTTTT	INS	TGCACTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	snRNA:U7	intron	Eip63E	FBgn0005640
A373R1	3L	3721919	G	'GGAA'	TGTGGGAAG	INS	CTTCCCACA	0.115	mutect2	intron_variant	MODIFIER	CG32264	intron	CG32264	FBgn0052264
A373R1	3L	4073593	G	'GAAAACTGCTT'	ACATGAAAC	INS	GTTTCATGT	0.35	strelka	upstream_gene_variant	MODIFIER	wit	intron	Faa	FBgn0016013
A373R1	3L	5136627	GA	'G'	TGAGGATTA	INS	TGAGGATTA	0.211	mutect2	frameshift_variant	HIGH	CG4611	exon_1	CG4611	FBgn0035591
A373R1	3L	5284136	CA	'C'	GCAGCAAAT	INS	GCAGCAAAT	0.0938	mutect2	intergenic_region	MODIFIER	shep-CR45741	intergenic	intergenic	intergenic
A373R1	3L	5515914	CGTTTCGAATGTGGGAG	'C'	GAATCGTTT	INS	GAATCGTTT	0.4	strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
A373R1	3L	5515942	C	'CCA'	TCCCCCCCA	INS	TCCCCCCCA	0.394	strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
A373R1	3L	5616857	AG	'A'	TCGAAGGGG	INS	TCGAAGGGG	0.167	strelka	intergenic_region	MODIFIER	Eaf6-Blimp-1	intergenic	intergenic	intergenic
A373R1	3L	5998818	TCGA	'T'	GCAGTCGAC	INS	GCAGTCGAC	0.13	strelka	intron_variant	MODIFIER	PVRAP	intron	PVRAP	FBgn0052406
A373R1	3L	6051594	TGCTG	'T'	CCCCTGCTG	INS	CCCCTGCTG	0.13	mutect2,strelka	frameshift_variant	HIGH	Jon65Aiii	exon	Jon65Aiii	FBgn0035665
A373R1	3L	6343885	C	'CCGA'	AATGCCGAC	INS	AATGCCGAC	0.111	strelka	intron_variant	MODIFIER	CG13300	intron	CG13300	FBgn0035699
A373R1	3L	6631217	C	'CCA'	TAATCCACA	INS	TAATCCACA	0.176	mutect2,strelka	intron_variant	MODIFIER	GluRIA	intron	GluRIA	FBgn0004619
A373R1	3L	6811951	CATTAGCAGTAATTGG	'C'	TATGCATTA	INS	TATGCATTA	0.4	strelka	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
A373R1	3L	6924952	AG	'A'	GGACAGAAG	INS	GGACAGAAG	0.154	strelka	intergenic_region	MODIFIER	Prat2-CG45413	intergenic	intergenic	intergenic
A373R1	3L	6960632	TCG	'T'	AGGATCGCT	INS	AGGATCGCT	0.0952	mutect2	frameshift_variant	HIGH	sgl	exon	sgl	FBgn0261445
A373R1	3L	7028569	AT	'A'	CTTTATTTT	INS	CTTTATTTT	0.13	strelka	upstream_gene_variant	MODIFIER	CG17744	intron	Mp	FBgn0260660
A373R1	3L	7098777	GA	'G'	GAATGAAAA	INS	GAATGAAAA	0.222	strelka	downstream_gene_variant	MODIFIER	Cpr65Ec	intron	form3	FBgn0053556
A373R1	3L	7186346	CA	'C'	CCACCAAAA	INS	CCACCAAAA	0.286	strelka	intron_variant	MODIFIER	Dscam2	intron	Dscam2	FBgn0265296
A373R1	3L	7248438	CA	'C'	ACTGCAAGG	INS	ACTGCAAGG	0.176	strelka	splice_region_variant&intron_variant	LOW	Cdc27	intron	Cdc27	FBgn0012058
A373R1	3L	7325411	AT	'A'	GTGCATTAT	INS	GTGCATTAT	0.136	strelka	frameshift_variant	HIGH	Rint1	exon_4	Rint1	FBgn0035762
A373R1	3L	7410249	GCA	'G'	CCAGGCACT	INS	CCAGGCACT	0.133	strelka	upstream_gene_variant	MODIFIER	CR44525	intergenic	intergenic	intergenic
A373R1	3L	7721019	CGT	'C'	TTGGCGTGC	INS	TTGGCGTGC	0.12	mutect2,strelka	frameshift_variant	HIGH	CG12262	3UTR	CG7457	FBgn0035812
A373R1	3L	8011095	GA	'G'	AATAGAAAA	INS	AATAGAAAA	0.333	strelka	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
A373R1	3L	8109035	C	'CT'	ATGACTTTC	INS	ATGACTTTC	0.143	strelka	upstream_gene_variant	MODIFIER	fan	intergenic	intergenic	intergenic
A373R1	3L	8323943	CAT	'C'	AAAGCATTG	INS	AAAGCATTG	0.105	mutect2	upstream_gene_variant	MODIFIER	CG43059	intergenic	intergenic	intergenic
A373R1	3L	8376505	GA	'G'	AACCGAAAA	INS	AACCGAAAA	0.2	strelka	intron_variant	MODIFIER	ImpE1	intron	ImpE1	FBgn0001253
A373R1	3L	8550592	G	'GGTATATGATTT'	ATGTGTATA	INS	TATACACAT	0.25	strelka	intron_variant	MODIFIER	rhea	intron	rhea	FBgn0260442
A373R1	3L	8550595	T	'TA'	TGTATAAGC	INS	TGTATAAGC	0.25	strelka	intron_variant	MODIFIER	rhea	intron	rhea	FBgn0260442
A373R1	3L	8969811	GAGC	'G'	GGACGAGCA	INS	GGACGAGCA	0.105	strelka	conservative_inframe_deletion	MODERATE	CG5026	exon_3	CG5026	FBgn0035945
A373R1	3L	9251707	G	'GA'	ACTTGAAAA	INS	TTTTCAAGT	0.125	strelka	upstream_gene_variant	MODIFIER	GluRIB	intergenic	intergenic	intergenic
A373R1	3L	9268110	CGT	'C'	CTTGCGTGT	INS	CTTGCGTGT	0.207	strelka	intron_variant	MODIFIER	GluRIB	intron	GluRIB	FBgn0264000
A373R1	3L	9499137	TG	'T'	TCAATGGGA	INS	TCAATGGGA	0.118	strelka	upstream_gene_variant	MODIFIER	path	intron	path	FBgn0036007
A373R1	3L	9633099	CCCGAGAACTGAGCAAAT	'C'	TCAGCCCGA	INS	TCAGCCCGA	0.08	mutect2	frameshift_variant	HIGH	fry	exon_24	fry	FBgn0016081
A373R1	3L	9669425	CT	'C'	CAGCCTTCT	INS	CAGCCTTCT	0.125	strelka	frameshift_variant	HIGH	fry	exon_4	fry	FBgn0016081
A373R1	3L	10023033	TA	'T'	GGAGTAGTT	INS	GGAGTAGTT	0.13	strelka	intron_variant	MODIFIER	dpr6	intron	dpr6	FBgn0040823
A373R1	3L	10085371	CATTTT	'C'	TGAACATTT	INS	TGAACATTT	0.13	mutect2,strelka	downstream_gene_variant	MODIFIER	CG14160	intron	dpr6	FBgn0040823
A373R1	3L	10120253	CA	'C'	TGGCCAGAA	INS	TGGCCAGAA	0.13	strelka	intron_variant	MODIFIER	dpr6	intron	dpr6	FBgn0040823
A373R1	3L	10146038	T	'TTA'	TTTATTTTT	INS	TTTATTTTT	0.143	strelka	downstream_gene_variant	MODIFIER	dpr10	intergenic	intergenic	intergenic
A373R1	3L	10291246	C	'CA'	TAACCTTTT	INS	TAACCTTTT	0.13	strelka	non_coding_transcript_exon_variant	MODIFIER	CR46003	exon_1	CR46003	FBgn0267665
A373R1	3L	10502093	AAGCATAAAACAAGACACCAAAGAAAAATAAAAACGCAGCGTGC	'A'	TAAAAAGCA	INS	TAAAAAGCA	0.333	strelka	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
A373R1	3L	11121393	T	'TC'	TTATTCCTA	INS	TTATTCCTA	0.12	strelka	frameshift_variant	HIGH	mRpL2	exon_1	mRpL2	FBgn0036135
A373R1	3L	11220624	G	'GC'	TTGTGCCAA	INS	TTGGCACAA	0.107	mutect2	intron_variant	MODIFIER	CG42671	intron	CG42671	FBgn0261553
A373R1	3L	11290288	TG	'T'	ATTGTGGGC	INS	ATTGTGGGC	0.115	strelka	intron_variant	MODIFIER	CG6175	intron	CG6175	FBgn0036152
A373R1	3L	11778805	GA	'G'	TGCTGAAAA	INS	TGCTGAAAA	0.346	mutect2	frameshift_variant	HIGH	CG14131	exon	CG14131	FBgn0036205
A373R1	3L	12125880	GAT	'G'	GGGCGATGT	INS	GGGCGATGT	0.0952	mutect2	frameshift_variant	HIGH	Ir68b	exon	Ir68b	FBgn0036250
A373R1	3L	12535813	A	'AT'	GGGTATTTT	INS	AAAATACCC	0.136	strelka	frameshift_variant	HIGH	CG4069	exon	CG4069	FBgn0036301
A373R1	3L	13188108	TG	'T'	TGTCTGGCT	INS	TGTCTGGCT	0.12	strelka	intergenic_region	MODIFIER	snky-CR45096	intergenic	intergenic	intergenic
A373R1	3L	13863531	CT	'C'	CCCCCTTTT	INS	CCCCCTTTT	0.136	strelka	downstream_gene_variant	MODIFIER	Hml	intron	CG8745	FBgn0036381
A373R1	3L	14444210	CA	'C'	GAGACAAGA	INS	GAGACAAGA	0.182	strelka	intron_variant	MODIFIER	bbg	intron	bbg	FBgn0087007
A373R1	3L	14683829	CA	'C'	ATGACAAAG	INS	ATGACAAAG	0.12	strelka	upstream_gene_variant	MODIFIER	CG5048	intron	ome	FBgn0259175
A373R1	3L	15269672	T	'TC'	TATTTCCGC	INS	TATTTCCGC	0.231	strelka	intergenic_region	MODIFIER	Tollo-Best4	intergenic	intergenic	intergenic
A373R1	3L	15300407	CTT	'C'	AACTCTTAG	INS	AACTCTTAG	0.1	mutect2	frameshift_variant	HIGH	Best4	exon_5	Best4	FBgn0036491
A373R1	3L	15474990	C	'CG'	TCAACGAAT	INS	TCAACGAAT	0.158	strelka	upstream_gene_variant	MODIFIER	CG7804	intergenic	intergenic	intergenic
A373R1	3L	15907204	CG	'C'	GGGACGGTT	INS	GGGACGGTT	0.167	strelka	intron_variant	MODIFIER	sff	intron	sff	FBgn0036544
A373R1	3L	15991551	GACTACGCAACCTTCACAGCCGACAGCTCTCTAGGATCGACT	'G'	TCAGGACTA	INS	TCAGGACTA	0.286	strelka	3_prime_UTR_variant	MODIFIER	Hip14	3UTR	Hip14	FBgn0259824
A373R1	3L	16154443	GT	'G'	TCTAGTTTT	INS	TCTAGTTTT	0.188	strelka	intron_variant	MODIFIER	CG5151	intron	CG5151	FBgn0036576
A373R1	3L	16166127	GT	'G'	ATGGGTAGC	INS	ATGGGTAGC	0.125	strelka	upstream_gene_variant	MODIFIER	CG5151	intergenic	intergenic	intergenic
A373R1	3L	16902279	GCA	'G'	TGCCGCATA	INS	TGCCGCATA	0.133	mutect2	intron_variant	MODIFIER	Lmpt	intron	Lmpt	FBgn0261565
A373R1	3L	16903546	AT	'A'	GAGGATACA	INS	GAGGATACA	0.0938	mutect2	frameshift_variant	HIGH	Lmpt	exon	Lmpt	FBgn0261565
A373R1	3L	17213462	GA	'G'	GAGAGAAAG	INS	GAGAGAAAG	0.1	mutect2	intron_variant	MODIFIER	Rbp6	intron	Rbp6	FBgn0260943
A373R1	3L	17276543	AT	'A'	GTTTATTTA	INS	GTTTATTTA	0.167	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45436	intergenic	intergenic	intergenic
A373R1	3L	17420701	TA	'T'	AACCTAAAA	INS	AACCTAAAA	0.2	mutect2,strelka	upstream_gene_variant	MODIFIER	CG7630	intron	blot	FBgn0027660
A373R1	3L	17424914	CTG	'C'	CCGACTGTT	INS	CCGACTGTT	0.13	mutect2	frameshift_variant	HIGH	Sec3	exon_1	Sec3	FBgn0266669
A373R1	3L	17963767	TAAA	'T'	TACGTAAAG	INS	TACGTAAAG	0.087	mutect2	upstream_gene_variant	MODIFIER	Eip75B	intron	Eip75B	FBgn0000568
A373R1	3L	17994671	GT	'G'	TTTAGTTTT	INS	TTTAGTTTT	0.217	strelka	intron_variant	MODIFIER	Eip75B	intron	Eip75B	FBgn0000568
A373R1	3L	18138438	CA	'C'	TGGCCATTG	INS	TGGCCATTG	0.0833	mutect2	upstream_gene_variant	MODIFIER	CR44669	intergenic	intergenic	intergenic
A373R1	3L	18200231	AG	'A'	AAGAAGGGA	INS	AAGAAGGGA	0.093	strelka	upstream_gene_variant	MODIFIER	CG7320	intergenic	intergenic	intergenic
A373R1	3L	18937699	TAGCTTATC	'T'	TATCTAGCT	INS	TATCTAGCT	0.138	strelka	intron_variant	MODIFIER	CG32204	intron	CG32204	FBgn0052204
A373R1	3L	18978308	T	'TGAA'	GACCTGAAG	INS	GACCTGAAG	0.087	mutect2	upstream_gene_variant	MODIFIER	CR45689	intergenic	intergenic	intergenic
A373R1	3L	19274806	C	'CA'	TTCACACAC	INS	TTCACACAC	0.13	mutect2	upstream_gene_variant	MODIFIER	CG14088	intergenic	intergenic	intergenic
A373R1	3L	19936997	A	'AC'	GCCAACCAC	INS	GTGGTTGGC	0.125	strelka	upstream_gene_variant	MODIFIER	Ac76E	intergenic	intergenic	intergenic
A373R1	3L	20208897	GCAC	'G'	AGTGGCACC	INS	AGTGGCACC	0.103	strelka	disruptive_inframe_deletion	MODERATE	CG6996	exon	CG6996	FBgn0036950
A373R1	3L	21151098	G	'GC'	TACAGCCCT	INS	AGGGCTGTA	0.182	strelka	upstream_gene_variant	MODIFIER	Ac78C	intron	Ac78C	FBgn0024150
A373R1	3L	21389922	GA	'G'	ATCAGAGAA	INS	ATCAGAGAA	0.125	strelka	intron_variant	MODIFIER	rgn	intron	rgn	FBgn0261258
A373R1	3L	21578852	T	'TA'	TGTTTAAAT	INS	TGTTTAAAT	0.15	strelka	upstream_gene_variant	MODIFIER	CR43939	intergenic	intergenic	intergenic
A373R1	3L	21676355	GGC	'G'	ACTTGGCGC	INS	ACTTGGCGC	0.115	mutect2,strelka	frameshift_variant	HIGH	Als2	exon_3	Als2	FBgn0037116
A373R1	3L	21739282	T	'TC'	GCAATCCCA	INS	GCAATCCCA	0.103	mutect2	upstream_gene_variant	MODIFIER	CG14567	intergenic	intergenic	intergenic
A373R1	3L	21852303	TGAGTGGTCCCAGGAAACGGCTGCTGCTCCTCTAATACTC	'T'	CGAGTGAGT	INS	CGAGTGAGT	0.286	strelka	downstream_gene_variant	MODIFIER	tRNA:CR32449	intron	mub	FBgn0262737
A373R1	3L	22302221	AGAGAAAATAATT	'A'	GCAGAGAGA	INS	GCAGAGAGA	0.118	mutect2,strelka	intron_variant	MODIFIER	Ten-m	intron	Ten-m	FBgn0004449
A373R1	3L	22569363	A	'AT'	GATGATTTC	INS	GAAATCATC	0.103	strelka	downstream_gene_variant	MODIFIER	CG14459	intergenic	intergenic	intergenic
A373R1	3L	22889062	AC	'A'	CTGTACGGC	INS	CTGTACGGC	0.114	strelka	upstream_gene_variant	MODIFIER	slif	intron	slif	FBgn0037203
A373R1	3L	23505506	ACC	'A'	GCCTACCGG	INS	GCCTACCGG	0.182	strelka	intergenic_region	MODIFIER	CG32230-AGO3	intergenic	intergenic	intergenic
A373R1	3L	23579207	CT	'C'	AGACCTTAT	INS	AGACCTTAT	0.211	strelka	intron_variant	MODIFIER	AGO3	intron	AGO3	FBgn0250816
A373R1	3L	23798013	TA	'T'	CGGATAGGC	INS	CGGATAGGC	0.0968	mutect2	intergenic_region	MODIFIER	CG43968-CG40470	intergenic	intergenic	intergenic
A373R1	3L	24269284	C	'CA'	GGTTCATTA	INS	GGTTCATTA	0.121	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A373R1	3L	24934648	AT	'A'	TATAATCAT	INS	TATAATCAT	0.133	strelka	intergenic_region	MODIFIER	CG40472-CG40002	intergenic	intergenic	intergenic
A373R1	3L	26479630	TAC	'T'	TACTTACAC	INS	TACTTACAC	0.158	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A373R1	3L	27678150	C	'CA'	ATGCCAAAA	INS	ATGCCAAAA	0.143	strelka	intergenic_region	MODIFIER	Dbp80-eIF-4B	intergenic	intergenic	intergenic
A373R1	3R	1015432	GA	'G'	CTGCGAAAT	INS	CTGCGAAAT	0.188	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R1	3R	1194838	GA	'G'	TGCGGAAAC	INS	TGCGGAAAC	0.154	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R1	3R	1312478	ATT	'A'	TGATATTTT	INS	TGATATTTT	0.4	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R1	3R	1424912	CA	'C'	GCAGCAAAA	INS	GCAGCAAAA	0.211	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R1	3R	1859092	C	'CA'	AATGCAAAA	INS	AATGCAAAA	0.174	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R1	3R	2460747	GA	'G'	AAGTGAGTT	INS	AAGTGAGTT	0.13	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R1	3R	2949911	G	'GC'	TACAGCAAA	INS	TTTGCTGTA	0.125	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A373R1	3R	4244029	TA	'T'	AGGTTAAAA	INS	AGGTTAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	CG14642	pseudogene	TwdlU	FBgn0037223
A373R1	3R	4461704	CA	'C'	AGAACAATG	INS	AGAACAATG	0.125	strelka	downstream_gene_variant	MODIFIER	CG31523	intron	CG31522	FBgn0051522
A373R1	3R	4648038	T	'TC'	ATTTTCGGT	INS	ATTTTCGGT	0.136	mutect2,strelka	frameshift_variant	HIGH	rpk	exon_1	CR44155	FBgn0265038
A373R1	3R	5063389	G	'GA'	TGAAGAAAA	INS	TTTTCTTCA	0.222	strelka	intergenic_region	MODIFIER	CR45588-corto	intergenic	intergenic	intergenic
A373R1	3R	5066152	AC	'A'	GGCGACCCT	INS	GGCGACCCT	0.12	strelka	intergenic_region	MODIFIER	CR45588-corto	intergenic	intergenic	intergenic
A373R1	3R	5175316	T	'TCG'	GTGTTCGCG	INS	GTGTTCGCG	0.148	mutect2,strelka	frameshift_variant	HIGH	cno	exon_15	cno	FBgn0259212
A373R1	3R	5696803	C	'CCA'	ATCCCCACT	INS	ATCCCCACT	0.2	mutect2,strelka	upstream_gene_variant	MODIFIER	CG2104	intron	plx	FBgn0261261
A373R1	3R	5754643	GACTTT	'G'	CGGCGACTT	INS	CGGCGACTT	0.136	mutect2	frameshift_variant	HIGH	CG2091	exon_1	CG2091	FBgn0037372
A373R1	3R	5770688	TG	'T'	CAGATGCGA	INS	CAGATGCGA	0.154	mutect2	intron_variant	MODIFIER	CG2082	intron	CG2082	FBgn0027608
A373R1	3R	5807103	TC	'T'	AAGATCCTG	INS	AAGATCCTG	0.15	strelka	frameshift_variant	HIGH	CG11000	exon_3	CG11000	FBgn0263353
A373R1	3R	5808362	T	'TCG'	GTAGTCGCT	INS	GTAGTCGCT	0.0952	mutect2	3_prime_UTR_variant	MODIFIER	CG11000	3UTR	CG11000	FBgn0263353
A373R1	3R	5904987	C	'CCAGCCAGCCAGCCAGCCAGCCAGG'	AAAGCCAGC	INS	AAAGCCAGC	0.25	strelka	intron_variant	MODIFIER	CG34113	intron	CG34113	FBgn0083949
A373R1	3R	5946862	G	'GCA'	CCACGCACA	INS	TGTGCGTGG	0.111	mutect2	intron_variant	MODIFIER	CG34113	intron	CG34113	FBgn0083949
A373R1	3R	6149433	C	'CG'	TTTTCGTTT	INS	TTTTCGTTT	0.15	strelka	downstream_gene_variant	MODIFIER	CG31559	intergenic	intergenic	intergenic
A373R1	3R	6304685	T	'TCA'	TTGGTCATT	INS	TTGGTCATT	0.105	mutect2	upstream_gene_variant	MODIFIER	Osi16	intergenic	intergenic	intergenic
A373R1	3R	6453617	T	'TG'	CATTTGGTT	INS	CATTTGGTT	0.129	strelka	frameshift_variant	HIGH	CG9727	exon	CG9727	FBgn0037445
A373R1	3R	6789704	TA	'T'	CCGCTAATG	INS	CCGCTAATG	0.0976	strelka	upstream_gene_variant	MODIFIER	Dfd	intergenic	intergenic	intergenic
A373R1	3R	6941092	T	'TG'	TTTGTGGGC	INS	TTTGTGGGC	0.13	strelka	intron_variant	MODIFIER	Antp	intron	Antp	FBgn0260642
A373R1	3R	7122797	TATA	'T'	TTATTATAA	INS	TTATTATAA	0.143	strelka	upstream_gene_variant	MODIFIER	CG10098	intron	Alh	FBgn0261238
A373R1	3R	7313294	GT	'G'	AAGAGTAGG	INS	AAGAGTAGG	0.167	strelka	upstream_gene_variant	MODIFIER	rn	intergenic	intergenic	intergenic
A373R1	3R	7441953	T	'TA'	TATTTAAAA	INS	TATTTAAAA	0.2	strelka	3_prime_UTR_variant	MODIFIER	CG14598	3UTR	CG14598	FBgn0037503
A373R1	3R	7552067	CT	'C'	TTGTCTGGT	INS	TTGTCTGGT	0.1	strelka	5_prime_UTR_variant	MODIFIER	CG45545	5UTR	CG45545	FBgn0267105
A373R1	3R	8615916	GCA	'G'	CCACGCACA	INS	CCACGCACA	0.0882	strelka	intron_variant	MODIFIER	5-HT2B	intron	5-HT2B	FBgn0261929
A373R1	3R	8667420	GA	'G'	GGACGAAAA	INS	GGACGAAAA	0.222	mutect2	3_prime_UTR_variant	MODIFIER	CG8032	3UTR	CG8032	FBgn0037606
A373R1	3R	9171648	CCA	'C'	AAATCCACA	INS	AAATCCACA	0.148	strelka	intron_variant	MODIFIER	pum	intron	pum	FBgn0003165
A373R1	3R	9604700	AG	'A'	AGCTAGATA	INS	AGCTAGATA	0.133	strelka	intron_variant	MODIFIER	CG8312	intron	CG8312	FBgn0037720
A373R1	3R	9659299	T	'TC'	CACTTCATG	INS	CACTTCATG	0.111	strelka	frameshift_variant	HIGH	CG9492	exon_23	CG9492	FBgn0037726
A373R1	3R	9665324	CT	'C'	CCTTCTTGG	INS	CCTTCTTGG	0.129	mutect2,strelka	intron_variant	MODIFIER	CG9492	intron	CG9492	FBgn0037726
A373R1	3R	9910082	CT	'C'	TTGGCTTTT	INS	TTGGCTTTT	0.25	strelka	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
A373R1	3R	9974258	G	'GT'	CCCTGTTTT	INS	AAAACAGGG	0.154	strelka	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
A373R1	3R	10462031	TA	'T'	AAATTATCG	INS	AAATTATCG	0.107	strelka	downstream_gene_variant	MODIFIER	CR44955	exon_1	CR44939	FBgn0266244
A373R1	3R	10610365	GAA	'G'	TGCAGAAAT	INS	TGCAGAAAT	0.0952	mutect2	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A373R1	3R	10626729	GA	'G'	CCCCGAAGT	INS	CCCCGAAGT	0.125	strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A373R1	3R	10648828	T	'TCGAC'	CGCCTCGAC	INS	CGCCTCGAC	0.0909	mutect2	downstream_gene_variant	MODIFIER	CR44018	intergenic	intergenic	intergenic
A373R1	3R	10761733	A	'AGT'	TGCGAGTGT	INS	ACACTCGCA	0.167	strelka	upstream_gene_variant	MODIFIER	CG31272	intron	Cap-H2	FBgn0037831
A373R1	3R	10770755	G	'GT'	AATTGTTTT	INS	AAAACAATT	0.2	strelka	upstream_gene_variant	MODIFIER	TfIIFbeta	intron	CG45076	FBgn0266446
A373R1	3R	11040468	CCA	'C'	TCCCCCACA	INS	TCCCCCACA	0.167	strelka	intron_variant	MODIFIER	CG34114	intron	CG34114	FBgn0083950
A373R1	3R	11119205	TAC	'T'	CAGTTACAC	INS	CAGTTACAC	0.118	strelka	upstream_gene_variant	MODIFIER	CG6629	intergenic	intergenic	intergenic
A373R1	3R	11562536	AT	'A'	TCCAATGGT	INS	TCCAATGGT	0.429	mutect2,strelka	upstream_gene_variant	MODIFIER	sea	intron	sea	FBgn0037912
A373R1	3R	11670020	AGT	'A'	GCTCAGTGA	INS	GCTCAGTGA	0.118	mutect2	frameshift_variant	HIGH	CG42327	exon_2	CG42327	FBgn0259227
A373R1	3R	11947985	GC	'G'	CCGGGCCCC	INS	CCGGGCCCC	0.108	strelka	upstream_gene_variant	MODIFIER	CG31211	intron	Cad87A	FBgn0037963
A373R1	3R	12326452	CAA	'C'	AGACCAATT	INS	AGACCAATT	0.103	mutect2,strelka	upstream_gene_variant	MODIFIER	tRNA:CR31432	intergenic	intergenic	intergenic
A373R1	3R	13235744	GT	'G'	AGTTGTTGT	INS	AGTTGTTGT	0.121	strelka	intron_variant	MODIFIER	Ace	intron	Ace	FBgn0000024
A373R1	3R	13247018	ATG	'A'	CTGTATGTG	INS	CTGTATGTG	0.231	strelka	intron_variant	MODIFIER	Ace	intron	Ace	FBgn0000024
A373R1	3R	13451772	T	'TC'	CTGATCCCT	INS	CTGATCCCT	0.12	strelka	downstream_gene_variant	MODIFIER	CR17025	intron	CG14372	FBgn0038156
A373R1	3R	13505812	AC	'A'	GCCAACCTT	INS	GCCAACCTT	0.194	mutect2	intergenic_region	MODIFIER	CR45589-CG12538	intergenic	intergenic	intergenic
A373R1	3R	13530068	G	'GGGTATATGTTT'	ATATGGGTA	INS	TACCCATAT	0.389	strelka	upstream_gene_variant	MODIFIER	CG42778	intergenic	intergenic	intergenic
A373R1	3R	13737923	T	'TC'	GTTTTCCTG	INS	GTTTTCCTG	0.125	strelka	intron_variant	MODIFIER	CG34383	intron	CG34383	FBgn0085412
A373R1	3R	14268385	T	'TG'	TGAATGGTT	INS	TGAATGGTT	0.136	strelka	frameshift_variant	HIGH	trx	exon_6	trx	FBgn0003862
A373R1	3R	14398031	AT	'A'	AAAAATATA	INS	AAAAATATA	0.136	strelka	upstream_gene_variant	MODIFIER	mir-2281	intron	cv-c	FBgn0086901
A373R1	3R	14650791	CT	'C'	CTATCTCAT	INS	CTATCTCAT	0.115	strelka	intron_variant	MODIFIER	l(3)L1231	intron	l(3)L1231	FBgn0086686
A373R1	3R	16008672	CT	'C'	GGGTCTTGT	INS	GGGTCTTGT	0.2	strelka	upstream_gene_variant	MODIFIER	CR42839	intergenic	intergenic	intergenic
A373R1	3R	16051660	GT	'G'	AGTGGTTGT	INS	AGTGGTTGT	0.133	strelka	upstream_gene_variant	MODIFIER	ird5	intron	msps	FBgn0027948
A373R1	3R	16318488	TG	'T'	AACATGTTG	INS	AACATGTTG	0.12	strelka	upstream_gene_variant	MODIFIER	tRNA:F2:89BC	intron	Sulf1	FBgn0040271
A373R1	3R	16338150	ACCG	'A'	ATACACCGC	INS	ATACACCGC	0.0833	mutect2	5_prime_UTR_variant	MODIFIER	Sulf1	exon_1	Sulf1	FBgn0040271
A373R1	3R	17102205	CAA	'C'	AGGACAATC	INS	AGGACAATC	0.111	mutect2	upstream_gene_variant	MODIFIER	cher	intron	cher	FBgn0014141
A373R1	3R	17368814	CA	'C'	AGTGCAAAG	INS	AGTGCAAAG	0.125	strelka	upstream_gene_variant	MODIFIER	beat-IIa	intergenic	intergenic	intergenic
A373R1	3R	17988364	C	'CCCACCACCA'	CCCCCCCAC	INS	CCCCCCCAC	0.296	strelka	intron_variant	MODIFIER	cpo	intron	cpo	FBgn0263995
A373R1	3R	18004469	A	'AGACAGGGAAAG'	GAAAAGGGG	INS	CCCCTTTTC	0.333	strelka	intron_variant	MODIFIER	cpo	intron	cpo	FBgn0263995
A373R1	3R	18331121	ATG	'A'	GTATATGTG	INS	GTATATGTG	0.129	strelka	3_prime_UTR_variant	MODIFIER	CG15803	3UTR	CG15803	FBgn0038606
A373R1	3R	18451541	AAT	'A'	CAAAAATAG	INS	CAAAAATAG	0.125	mutect2	upstream_gene_variant	MODIFIER	fru	intron	fru	FBgn0004652
A373R1	3R	18757666	T	'TG'	AGTATGGAT	INS	AGTATGGAT	0.0976	strelka	frameshift_variant	HIGH	CG14299	exon_3	CG14299	FBgn0038651
A373R1	3R	19379652	A	'AT'	GGAAATTTG	INS	CAAATTTCC	0.158	strelka	upstream_gene_variant	MODIFIER	CG3581	intron	Ino80	FBgn0086613
A373R1	3R	19409678	TG	'T'	TTATTGGCG	INS	TTATTGGCG	0.25	strelka	frameshift_variant	HIGH	CG11626	exon_2	CG11626	FBgn0038705
A373R1	3R	19561369	A	'AC'	ATTTACCGA	INS	TCGGTAAAT	0.286	mutect2,strelka	intron_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
A373R1	3R	19694930	CT	'C'	ATCACTTCC	INS	ATCACTTCC	0.12	strelka	intron_variant	MODIFIER	Naam	intron	Naam	FBgn0051216
A373R1	3R	20279039	TTA	'T'	TTTTTTATT	INS	TTTTTTATT	0.143	strelka	intron_variant	MODIFIER	cic	intron	cic	FBgn0262582
A373R1	3R	20507931	CA	'C'	ACCACATCT	INS	ACCACATCT	0.138	mutect2	upstream_gene_variant	MODIFIER	MtnB	intron	MFS9	FBgn0038799
A373R1	3R	20784202	GAC	'G'	CACAGACAC	INS	CACAGACAC	0.16	strelka	intron_variant	MODIFIER	Syp	intron	Syp	FBgn0038826
A373R1	3R	20945949	CT	'C'	CTTTCTTTG	INS	CTTTCTTTG	0.167	mutect2,strelka	upstream_gene_variant	MODIFIER	CG31191	intergenic	intergenic	intergenic
A373R1	3R	21189743	ATCGAAAGAGATTCTCATCTGTAGAAG	'A'	TGATATCGA	INS	TGATATCGA	0.188	strelka	intron_variant	MODIFIER	SNF4Agamma	intron	SNF4Agamma	FBgn0264357
A373R1	3R	21828049	CCCA	'C'	TTTGCCCAC	INS	TTTGCCCAC	0.0909	mutect2	upstream_gene_variant	MODIFIER	Gr93a	intergenic	intergenic	intergenic
A373R1	3R	21974580	TTC	'T'	GTTTTTCCT	INS	GTTTTTCCT	0.182	strelka	intron_variant	MODIFIER	Eip93F	intron	Eip93F	FBgn0264490
A373R1	3R	22223952	A	'AGT'	GATAAGTGG	INS	CCACTTATC	0.1	mutect2	intron_variant	MODIFIER	SKIP	intron	SKIP	FBgn0051163
A373R1	3R	22766667	TA	'T'	TGACTAGAA	INS	TGACTAGAA	0.13	strelka	5_prime_UTR_variant	MODIFIER	Usp12-46	exon_2	CG7029	FBgn0039026
A373R1	3R	22806858	A	'AGCCCCT'	TTCCATCGT	INS	ACGATGGAA	0.158	strelka	3_prime_UTR_variant	MODIFIER	CG7031	3UTR	CG7031	FBgn0039027
A373R1	3R	23106215	GCA	'G'	GTGCGCACA	INS	GTGCGCACA	0.12	strelka	intron_variant	MODIFIER	CG13830	intron	Cow	FBgn0039054
A373R1	3R	23494087	A	'AT'	ATCGATTTT	INS	AAAATCGAT	0.222	mutect2	downstream_gene_variant	MODIFIER	Ir94h	intergenic	intergenic	intergenic
A373R1	3R	23916683	GA	'G'	CCCAGAAAA	INS	CCCAGAAAA	0.292	strelka	intron_variant	MODIFIER	sba	intron	sba	FBgn0016754
A373R1	3R	23917407	C	'CG'	CCCACGATA	INS	CCCACGATA	0.12	strelka	intron_variant	MODIFIER	sba	intron	sba	FBgn0016754
A373R1	3R	24013498	CGT	'C'	AGGCCGTTG	INS	AGGCCGTTG	0.154	strelka	frameshift_variant	HIGH	KrT95D	exon_3	KrT95D	FBgn0020647
A373R1	3R	24454340	TTG	'T'	CGCTTTGTG	INS	CGCTTTGTG	0.238	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
A373R1	3R	24941131	AG	'A'	CGTAAGGTT	INS	CGTAAGGTT	0.167	mutect2,strelka	frameshift_variant	HIGH	ssh	exon_7	ssh	FBgn0029157
A373R1	3R	25126046	CG	'C'	AGTTCGTAG	INS	AGTTCGTAG	0.0652	mutect2	frameshift_variant	HIGH	Mocs2	exon_4	Mocs2	FBgn0039280
A373R1	3R	25228276	AGGCTTACTTTC	'A'	TTTCAGGCT	INS	TTTCAGGCT	0.0741	mutect2	downstream_gene_variant	MODIFIER	CG11851	intron	Cad96Cb	FBgn0039294
A373R1	3R	25251466	GA	'G'	TGGCGAAGT	INS	TGGCGAAGT	0.158	mutect2	frameshift_variant	HIGH	Nup358	exon_2	Nup358	FBgn0039302
A373R1	3R	25384046	G	'GT'	CAAAGTTCC	INS	GGAACTTTG	0.174	mutect2	frameshift_variant	HIGH	CG31437	exon	CG31437	FBgn0051437
A373R1	3R	25759421	TA	'T'	AACGTAAAA	INS	AACGTAAAA	0.167	strelka	intron_variant	MODIFIER	LpR1	intron	LpR1	FBgn0066101
A373R1	3R	25842988	A	'AT'	CATTATTAG	INS	CTAATAATG	0.115	strelka	upstream_gene_variant	MODIFIER	CR45653	intergenic	intergenic	intergenic
A373R1	3R	25934497	G	'GT'	GTGTGTTTT	INS	AAAACACAC	0.138	strelka	downstream_gene_variant	MODIFIER	CR34024	intron	CCAP-R	FBgn0039396
A373R1	3R	26043944	AG	'A'	GTTAAGCAA	INS	GTTAAGCAA	0.167	strelka	downstream_gene_variant	MODIFIER	E(spl)m8-HLH	intron	gro	FBgn0001139
A373R1	3R	26391396	T	'TGA'	TCAATGAGT	INS	TCAATGAGT	0.2	mutect2,strelka	intergenic_region	MODIFIER	CG33970-ppk15	intergenic	intergenic	intergenic
A373R1	3R	26458107	AT	'A'	GGACATCGG	INS	GGACATCGG	0.1	mutect2	upstream_gene_variant	MODIFIER	Pdf	intergenic	intergenic	intergenic
A373R1	3R	27121425	GGTGA	'G'	TGCGGGTGA	INS	TGCGGGTGA	0.13	mutect2,strelka	frameshift_variant	HIGH	CG5882	exon	CG5882	FBgn0039490
A373R1	3R	27790838	A	'AG'	CAGGAGGAG	INS	CTCCTCCTG	0.158	strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
A373R1	3R	28590624	CAT	'C'	TAACCATAG	INS	TAACCATAG	0.115	mutect2,strelka	upstream_gene_variant	MODIFIER	CR43440	exon_1	MRE23	FBgn0262741
A373R1	3R	29008690	A	'AT'	GCGTATTTG	INS	CAAATACGC	0.12	strelka	downstream_gene_variant	MODIFIER	mir-4947	intron	wat	FBgn0039620
A373R1	3R	29228348	A	'AT'	GTCAATTTT	INS	AAAATTGAC	0.222	strelka	upstream_gene_variant	MODIFIER	Cisd2	intergenic	intergenic	intergenic
A373R1	3R	29564917	A	'AGC'	AATAAGCGT	INS	ACGCTTATT	0.0833	mutect2	3_prime_UTR_variant	MODIFIER	Dr	3UTR	Dr	FBgn0000492
A373R1	3R	29734094	AT	'A'	GTATATACA	INS	GTATATACA	0.176	strelka	3_prime_UTR_variant	MODIFIER	Kul	3UTR	Kul	FBgn0039688
A373R1	3R	30197248	TG	'T'	AGGATGATG	INS	AGGATGATG	0.125	strelka	frameshift_variant	HIGH	CG9743	exon_4	CG9743	FBgn0039756
A373R1	3R	30271123	CCA	'C'	TTCCCCACA	INS	TTCCCCACA	0.0976	strelka	downstream_gene_variant	MODIFIER	CR46113	intergenic	intergenic	intergenic
A373R1	3R	30327333	AT	'A'	TCACATTTC	INS	TCACATTTC	0.111	strelka	intron_variant	MODIFIER	hdc	intron	hdc	FBgn0010113
A373R1	3R	30774718	C	'CA'	CATCCAAAA	INS	CATCCAAAA	0.182	strelka	intron_variant	MODIFIER	zfh1	intron	zfh1	FBgn0004606
A373R1	3R	30802067	AT	'A'	GATAATGAG	INS	GATAATGAG	0.136	strelka	intron_variant	MODIFIER	wts	intron	wts	FBgn0011739
A373R1	3R	31015852	GT	'G'	AAGTGTTTG	INS	AAGTGTTTG	0.148	strelka	intron_variant	MODIFIER	5-HT7	intron	5-HT7	FBgn0004573
A373R1	3R	31052916	GC	'G'	GGTAGCAGG	INS	GGTAGCAGG	0.12	strelka	frameshift_variant	HIGH	l(3)03670	exon	l(3)03670	FBgn0010808
A373R1	3R	31540217	CT	'C'	TTTGCTTTT	INS	TTTGCTTTT	0.136	strelka	upstream_gene_variant	MODIFIER	nyo	intergenic	intergenic	intergenic
A373R1	3R	31852907	TATA	'T'	AATATATAT	INS	AATATATAT	0.148	mutect2	intron_variant	MODIFIER	heph	intron	heph	FBgn0011224
A373R1	4	271011	TC	'T'	TTATTCCCC	INS	TTATTCCCC	0.13	strelka	intron_variant	MODIFIER	NfI	intron	NfI	FBgn0042696
A373R1	4	761908	TA	'T'	GGACTAATG	INS	GGACTAATG	0.2	strelka	frameshift_variant	HIGH	bt	exon_33	bt	FBgn0005666
A373R1	4	1178616	CA	'C'	GTAACATTG	INS	GTAACATTG	0.12	strelka	intron_variant	MODIFIER	pho	intron	pho	FBgn0002521
A373R1	X	409352	C	'CT'	AAATCTTTT	INS	AAATCTTTT	0.308	strelka	upstream_gene_variant	MODIFIER	l(1)sc	intron	CG32816	FBgn0052816
A373R1	X	448332	CA	'C'	CGAGCAAAT	INS	CGAGCAAAT	0.222	mutect2	intron_variant	MODIFIER	CG32816	intron	CG32816	FBgn0052816
A373R1	X	717310	AAG	'A'	GCGAAAGAG	INS	GCGAAAGAG	0.231	strelka	intron_variant	MODIFIER	sdk	intron	sdk	FBgn0021764
A373R1	X	912071	TG	'T'	TCGGTGGAC	INS	TCGGTGGAC	0.333	strelka	upstream_gene_variant	MODIFIER	CG43867	intron	CG43867	FBgn0264449
A373R1	X	990188	A	'AC'	TTTGACCCT	INS	AGGGTCAAA	0.158	strelka	upstream_gene_variant	MODIFIER	CG18823	intergenic	intergenic	intergenic
A373R1	X	1332067	GGGT	'G'	GAGGGGGTG	INS	GAGGGGGTG	0.167	strelka	conservative_inframe_deletion	MODERATE	CG11409	exon	CG11409	FBgn0024366
A373R1	X	1334905	AT	'A'	TTAAATGGA	INS	TTAAATGGA	0.273	mutect2,strelka	intron_variant	MODIFIER	CG11409	intron	CG11409	FBgn0024366
A373R1	X	1355281	T	'TGCA'	GCGTTGCAG	INS	GCGTTGCAG	0.182	mutect2	conservative_inframe_insertion	MODERATE	CG11417	exon	CG11417	FBgn0024364
A373R1	X	1418380	A	'AT'	ATGAATTCT	INS	AGAATTCAT	0.235	strelka	intron_variant	MODIFIER	futsch	intron	futsch	FBgn0259108
A373R1	X	2100568	GT	'G'	AGCTGTGTG	INS	AGCTGTGTG	0.3	mutect2,strelka	upstream_gene_variant	MODIFIER	snoRNA:Me18S-C1024	intron	csw	FBgn0000382
A373R1	X	2123387	ATG	'A'	CTGAATGTG	INS	CTGAATGTG	0.333	strelka	upstream_gene_variant	MODIFIER	ph-d	intergenic	intergenic	intergenic
A373R1	X	2463274	CA	'C'	TATGCAAAT	INS	TATGCAAAT	0.308	strelka	intron_variant	MODIFIER	boi	intron	boi	FBgn0040388
A373R1	X	2742696	A	'AC'	TGTTACCGC	INS	GCGGTAACA	0.167	strelka	frameshift_variant	HIGH	Syx4	intron	kirre	FBgn0028369
A373R1	X	3515320	GT	'G'	TAAAGTTGC	INS	TAAAGTTGC	0.19	mutect2	frameshift_variant	HIGH	CG13021	exon	CG13021	FBgn0029669
A373R1	X	3621820	C	'CT'	TTCCCTTTT	INS	TTCCCTTTT	0.231	strelka	intron_variant	MODIFIER	AstA-R1	intron	AstA-R1	FBgn0266429
A373R1	X	3831158	CA	'C'	AGAGCAAGG	INS	AGAGCAAGG	0.25	strelka	3_prime_UTR_variant	MODIFIER	CG2901	3UTR	CG2901	FBgn0029679
A373R1	X	4070849	TAAGGGGTACCATCATTA	'T'	TTGATAAGG	INS	TTGATAAGG	0.182	strelka	intergenic_region	MODIFIER	CR45482-CG43689	intergenic	intergenic	intergenic
A373R1	X	4186607	CAA	'C'	GCTCCAAAA	INS	GCTCCAAAA	0.125	mutect2	intron_variant	MODIFIER	Fas2	intron	Fas2	FBgn0000635
A373R1	X	4552269	T	'TATAC'	CATATATAT	INS	CATATATAT	0.167	mutect2	upstream_gene_variant	MODIFIER	Usf	intron	CG3527	FBgn0029714
A373R1	X	4612724	GGTGT	'G'	GTATGGTGT	INS	GTATGGTGT	0.429	strelka	upstream_gene_variant	MODIFIER	CR32773	intergenic	intergenic	intergenic
A373R1	X	4877403	CGGG	'C'	TTTGCGGGG	INS	TTTGCGGGG	0.231	mutect2,strelka	upstream_gene_variant	MODIFIER	CR43495	intron	CG42594	FBgn0260971
A373R1	X	4920340	GT	'G'	GATTGTTCT	INS	GATTGTTCT	0.2	strelka	frameshift_variant	HIGH	CG6903	exon_5	CG6903	FBgn0029737
A373R1	X	5233302	TAC	'T'	CACATACAC	INS	CACATACAC	0.444	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A373R1	X	5859908	GT	'G'	AAAAGTTAT	INS	AAAAGTTAT	0.4	mutect2	downstream_gene_variant	MODIFIER	CG43137	intergenic	intergenic	intergenic
A373R1	X	6133616	CGT	'C'	CGAGCGTGT	INS	CGAGCGTGT	0.188	strelka	intron_variant	MODIFIER	Ca-alpha1T	intron	Ca-alpha1T	FBgn0264386
A373R1	X	6887021	CAT	'C'	TGCCCATTA	INS	TGCCCATTA	0.333	mutect2,strelka	intergenic_region	MODIFIER	CG43736-CG14431	intergenic	intergenic	intergenic
A373R1	X	6924330	CA	'C'	GCGTCAAAA	INS	GCGTCAAAA	0.273	strelka	intron_variant	MODIFIER	CG14431	intron	CG14431	FBgn0029922
A373R1	X	7056071	CA	'C'	CGTCCAAAA	INS	CGTCCAAAA	0.444	strelka	intron_variant	MODIFIER	CG12541	intron	CG12541	FBgn0029930
A373R1	X	7170628	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.364	strelka	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A373R1	X	7240122	GA	'G'	CGACGAAAA	INS	CGACGAAAA	0.6	strelka	3_prime_UTR_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A373R1	X	7360679	GA	'G'	GTGCGATAT	INS	GTGCGATAT	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	CG1999	intron	CG1677	FBgn0029941
A373R1	X	7518581	G	'GAC'	ATAGGACAC	INS	GTGTCCTAT	0.2	mutect2	intron_variant	MODIFIER	CG32719	intron	CG32719	FBgn0052719
A373R1	X	7557420	GA	'G'	GGCTGAAAT	INS	GGCTGAAAT	0.188	strelka	non_coding_transcript_exon_variant	MODIFIER	CR44501	exon_1	CR44501	FBgn0265694
A373R1	X	7616593	AT	'A'	CACGATTTT	INS	CACGATTTT	0.214	strelka	intron_variant	MODIFIER	ct	intron	ct	FBgn0004198
A373R1	X	8112232	AT	'A'	CACTATTTT	INS	CACTATTTT	0.375	strelka	upstream_gene_variant	MODIFIER	CG1575	intron	Gclc	FBgn0040319
A373R1	X	8128027	CA	'C'	TAATCAATT	INS	TAATCAATT	0.273	strelka	upstream_gene_variant	MODIFIER	CG2116	intron	cyr	FBgn0030001
A373R1	X	8307449	AG	'A'	ACATAGATG	INS	ACATAGATG	0.3	mutect2,strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
A373R1	X	8320997	CA	'C'	CAGCCAAAA	INS	CAGCCAAAA	0.25	strelka	downstream_gene_variant	MODIFIER	CR43695	intron	nAChRalpha3	FBgn0015519
A373R1	X	8360752	A	'AT'	CTCGACTTT	INS	AAAGTCGAG	0.267	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
A373R1	X	8395349	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.4	strelka	upstream_gene_variant	MODIFIER	CG10555	intergenic	intergenic	intergenic
A373R1	X	8723674	CAG	'C'	TGCACAGAG	INS	TGCACAGAG	0.2	mutect2	upstream_gene_variant	MODIFIER	l(1)G0020	intergenic	intergenic	intergenic
A373R1	X	8898025	G	'GT'	AACCGTTTT	INS	AAAACGGTT	0.267	strelka	upstream_gene_variant	MODIFIER	Rbm13	intron	Moe	FBgn0011661
A373R1	X	8959867	CA	'C'	TATACAAAA	INS	TATACAAAA	0.333	strelka	intron_variant	MODIFIER	rdgA	intron	rdgA	FBgn0261549
A373R1	X	9073323	GAT	'G'	ACTCGATGC	INS	ACTCGATGC	0.0909	mutect2	upstream_gene_variant	MODIFIER	CG10970	intron	CG44325	FBgn0265413
A373R1	X	9166203	TAGC	'T'	GAAGTAGCA	INS	GAAGTAGCA	0.188	strelka	5_prime_UTR_variant	MODIFIER	mei-P26	exon_1	mei-P26	FBgn0026206
A373R1	X	9418409	CA	'C'	ATGGCAACA	INS	ATGGCAACA	0.143	strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
A373R1	X	9542392	GAT	'G'	GAGAGATAG	INS	GAGAGATAG	0.231	strelka	intron_variant	MODIFIER	CG32700	intron	CG32700	FBgn0267253
A373R1	X	9896825	G	'GC'	GGGTGCCAC	INS	GTGGCACCC	0.286	mutect2	intron_variant	MODIFIER	CG15249	intron	CG15249	FBgn0030161
A373R1	X	10049062	G	'GT'	ATCCGTTTT	INS	AAAACGGAT	0.5	strelka	upstream_gene_variant	MODIFIER	CR45185	intron	Cht6	FBgn0263132
A373R1	X	10628584	TG	'T'	ATGGTGTCC	INS	ATGGTGTCC	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	CG9806	intron	X11Lbeta	FBgn0052677
A373R1	X	10679071	TCC	'T'	CCAATCCCC	INS	CCAATCCCC	0.312	mutect2	intron_variant	MODIFIER	X11Lbeta	intron	X11Lbeta	FBgn0052677
A373R1	X	10812822	TA	'T'	GGCGTATAT	INS	GGCGTATAT	0.222	mutect2	intron_variant	MODIFIER	Imp	intron	Imp	FBgn0262735
A373R1	X	11002937	C	'CA'	AACTCAAAA	INS	AACTCAAAA	0.278	strelka	intron_variant	MODIFIER	CG42339	intron	CG42339	FBgn0259241
A373R1	X	11059237	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.231	strelka	downstream_gene_variant	MODIFIER	CG1537	intron	CG1545	FBgn0030259
A373R1	X	11090810	G	'GT'	TCTTGTGTA	INS	TACACAAGA	0.214	strelka	upstream_gene_variant	MODIFIER	sev	intron	CG2076	FBgn0030263
A373R1	X	11157785	T	'TG'	CAAATGGGC	INS	CAAATGGGC	0.19	strelka	frameshift_variant	HIGH	CG32668	exon_6	CG32668	FBgn0052668
A373R1	X	11276205	AT	'A'	TATTATTTT	INS	TATTATTTT	0.231	strelka	intron_variant	MODIFIER	CG44422	intron	CG44422	FBgn0265595
A373R1	X	11449676	G	'GA'	GTTTGAAAA	INS	TTTTCAAAC	0.158	strelka	downstream_gene_variant	MODIFIER	Sk1	intron	Evi5	FBgn0262740
A373R1	X	11568131	G	'GCA'	TCGCGCACA	INS	TGTGCGCGA	0.125	mutect2	frameshift_variant	HIGH	RpII215	exon_2	RpII215	FBgn0003277
A373R1	X	11617257	GCAA	'G'	TAATGCAAC	INS	TAATGCAAC	0.4	strelka	disruptive_inframe_deletion	MODERATE	Met	exon_1	Met	FBgn0002723
A373R1	X	11679734	TAC	'T'	TGCATACAC	INS	TGCATACAC	0.231	strelka	upstream_gene_variant	MODIFIER	CG2371	intron	bif	FBgn0014133
A373R1	X	11731847	G	'GT'	ATTAGTTTT	INS	AAAACTAAT	0.25	strelka	upstream_gene_variant	MODIFIER	inaF-D	intron	inaF-A	FBgn0085351
A373R1	X	12185078	GA	'G'	ATCTGAAAA	INS	ATCTGAAAA	0.5	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
A373R1	X	12372316	TA	'T'	ATGATAATG	INS	ATGATAATG	0.188	strelka	upstream_gene_variant	MODIFIER	CG2577	intergenic	intergenic	intergenic
A373R1	X	12417348	A	'AT'	TTCGATTTT	INS	AAAATCGAA	0.231	strelka	intergenic_region	MODIFIER	CR32652-Pkcdelta	intergenic	intergenic	intergenic
A373R1	X	12692911	C	'CA'	TGACCATCG	INS	TGACCATCG	0.214	strelka	frameshift_variant	HIGH	Smr	exon_7	Smr	FBgn0265523
A373R1	X	13151988	TAC	'T'	CCCATACAC	INS	CCCATACAC	0.25	mutect2	upstream_gene_variant	MODIFIER	CG4332	intron	CG32645	FBgn0052645
A373R1	X	13306254	GA	'G'	ATCCGAGCG	INS	ATCCGAGCG	0.148	mutect2,strelka	frameshift_variant	HIGH	IP3K2	exon_1	CR45018	FBgn0266376
A373R1	X	13308512	T	'TA'	TTTTTTATT	INS	TTTTTTATT	0.444	strelka	downstream_gene_variant	MODIFIER	CR45018	intron	IP3K2	FBgn0283680
A373R1	X	13371199	GCA	'G'	ATTCGCACA	INS	ATTCGCACA	0.462	strelka	splice_region_variant	LOW	CG1640	exon_1	CG1640	FBgn0030478
A373R1	X	13388607	CG	'C'	TGGCCGGTG	INS	TGGCCGGTG	0.154	mutect2	frameshift_variant	HIGH	CG1662	exon	CG1662	FBgn0030481
A373R1	X	13388763	TC	'T'	AGCCTCTGG	INS	AGCCTCTGG	0.214	strelka	3_prime_UTR_variant	MODIFIER	CG1662	3UTR	CG1662	FBgn0030481
A373R1	X	13674483	GT	'G'	GTGTGTTTT	INS	GTGTGTTTT	0.308	strelka	3_prime_UTR_variant	MODIFIER	CG15760	3UTR	CG15760	FBgn0030508
A373R1	X	14907279	T	'TG'	TGAATGGAT	INS	TGAATGGAT	0.167	strelka	frameshift_variant	HIGH	CG9509	exon	CG9509	FBgn0030594
A373R1	X	15672180	CCT	'C'	TGGTCCTTG	INS	TGGTCCTTG	0.118	mutect2	upstream_gene_variant	MODIFIER	CG15646	intergenic	intergenic	intergenic
A373R1	X	15750218	AT	'A'	CGGCATGTC	INS	CGGCATGTC	0.158	strelka	frameshift_variant	HIGH	CG8239	exon	CG8239	FBgn0030683
A373R1	X	15927553	GAA	'G'	AACGGAATA	INS	AACGGAATA	0.143	mutect2	frameshift_variant	HIGH	Lcch3	3UTR	Ranbp16	FBgn0053180
A373R1	X	16413219	A	'AT'	TGTCATTGA	INS	TCAATGACA	0.188	strelka	frameshift_variant	HIGH	CG4301	exon_8	CG4301	FBgn0030747
A373R1	X	16449404	GT	'G'	TTCGGTTTT	INS	TTCGGTTTT	0.375	strelka	5_prime_UTR_variant	MODIFIER	Rbp2	5UTR	Rbp2	FBgn0262734
A373R1	X	17345486	C	'CT'	GGTCCTTTT	INS	GGTCCTTTT	0.375	strelka	intergenic_region	MODIFIER	B-H2-CR43491	intergenic	intergenic	intergenic
A373R1	X	17590708	TC	'T'	CTCCTCCAC	INS	CTCCTCCAC	0.167	strelka	frameshift_variant	HIGH	CG12992	exon	CG12992	FBgn0030846
A373R1	X	17616793	TA	'T'	ATATTATTT	INS	ATATTATTT	0.333	strelka	intergenic_region	MODIFIER	X11L-stas	intergenic	intergenic	intergenic
A373R1	X	17955993	CTG	'C'	GGTTCTGTG	INS	GGTTCTGTG	0.2	mutect2	intron_variant	MODIFIER	Sh	intron	Sh	FBgn0003380
A373R1	X	18091451	AG	'A'	CAAAAGCGG	INS	CAAAAGCGG	0.176	strelka	upstream_gene_variant	MODIFIER	CG7536	intron	scu	FBgn0021765
A373R1	X	18152360	TAG	'T'	TAGATAGAG	INS	TAGATAGAG	0.167	strelka	upstream_gene_variant	MODIFIER	Frq1	intergenic	intergenic	intergenic
A373R1	X	18293476	TCC	'T'	GTACTCCCC	INS	GTACTCCCC	0.235	mutect2,strelka	downstream_gene_variant	MODIFIER	CR15061	intergenic	intergenic	intergenic
A373R1	X	18300228	AT	'A'	TATGATTTT	INS	TATGATTTT	0.3	strelka	intergenic_region	MODIFIER	CR15061-os	intergenic	intergenic	intergenic
A373R1	X	18648237	GT	'G'	TGGCGTCCT	INS	TGGCGTCCT	0.286	mutect2	5_prime_UTR_variant	MODIFIER	CG6540	5UTR	CG6540	FBgn0030943
A373R1	X	18793972	CT	'C'	CAGTCTTAG	INS	CAGTCTTAG	0.2	strelka	downstream_gene_variant	MODIFIER	Atg101	intron	S6KL	FBgn0283473
A373R1	X	19237159	G	'GGC'	TTGGGGCGC	INS	GCGCCCCAA	0.222	mutect2	frameshift_variant	HIGH	CG14196	exon_4	CG14196	FBgn0031002
A373R1	X	21231452	TA	'T'	AGGCTAAAA	INS	AGGCTAAAA	0.136	mutect2,strelka	upstream_gene_variant	MODIFIER	tRNA:CR32518:Psi	intron	CG32521	FBgn0052521
A373R1	X	21426998	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.364	strelka	downstream_gene_variant	MODIFIER	CG10918	intron	DIP-beta	FBgn0259245
A373R1	X	23023374	T	'TCA'	TCCATCACC	INS	TCCATCACC	0.182	mutect2	5_prime_UTR_variant	MODIFIER	zyd	5UTR	zyd	FBgn0265767
A373R3	2L	2211491	GT	'G'	ACGTGTAGC	INS	ACGTGTAGC	0.0714	mutect2	frameshift_variant	HIGH	CG15385	exon_4	CG15385	FBgn0031397
A373R3	2L	4312676	ACTG	'A'	TGCCACTGC	INS	TGCCACTGC	0.13	strelka	intron_variant	MODIFIER	tutl	intron	tutl	FBgn0010473
A373R3	2L	5239494	TA	'T'	CCATTAACA	INS	CCATTAACA	0.0755	mutect2	upstream_gene_variant	MODIFIER	tRNA:CR31971	intron	tkv	FBgn0003716
A373R3	2L	5922864	ATTAGATGATT	'A'	TATTATTAG	INS	TATTATTAG	0.333	strelka	upstream_gene_variant	MODIFIER	dsf	intergenic	intergenic	intergenic
A373R3	2L	6146551	CA	'C'	ATCCCAAAA	INS	ATCCCAAAA	0.139	strelka	downstream_gene_variant	MODIFIER	CG13991	intergenic	intergenic	intergenic
A373R3	2L	7619680	CT	'C'	GCATCTTTT	INS	GCATCTTTT	0.111	mutect2	downstream_gene_variant	MODIFIER	CG6739	intergenic	intergenic	intergenic
A373R3	2L	8951564	A	'ACT'	GCTCACTCT	INS	AGAGTGAGC	0.103	strelka	upstream_gene_variant	MODIFIER	C1GalTA	intergenic	intergenic	intergenic
A373R3	2L	10988093	A	'AG'	AAAGAGGGA	INS	TCCCTCTTT	0.0943	mutect2	frameshift_variant	HIGH	CG12253	exon_1	CG12253	FBgn0026148
A373R3	2L	11079743	TTG	'T'	TGTTTTGTT	INS	TGTTTTGTT	0.115	mutect2	upstream_gene_variant	MODIFIER	CR45725	intron	AstC	FBgn0032336
A373R3	2L	11123469	AT	'A'	ACTCATTTT	INS	ACTCATTTT	0.0816	strelka	frameshift_variant&start_lost	HIGH	Csl4	start_codon	Csl4	FBgn0032346
A373R3	2L	11392626	TA	'T'	ATTGTAAGT	INS	ATTGTAAGT	0.0625	strelka	upstream_gene_variant	MODIFIER	CR43681	intergenic	intergenic	intergenic
A373R3	2L	11933771	C	'CA'	ATTGCAAAA	INS	ATTGCAAAA	0.0976	strelka	upstream_gene_variant	MODIFIER	Or33a	intergenic	intergenic	intergenic
A373R3	2L	12368155	T	'TTTGGCCTACTAAAATCACAAAG'	TGATTTTGG	INS	TGATTTTGG	0.263	strelka	upstream_gene_variant	MODIFIER	bru-2	intron	bru2	FBgn0262475
A373R3	2L	12814778	CT	'C'	CAAACTTTT	INS	CAAACTTTT	0.118	strelka	downstream_gene_variant	MODIFIER	kek1	intergenic	intergenic	intergenic
A373R3	2L	13832442	TG	'T'	ATGTTGACT	INS	ATGTTGACT	0.0714	mutect2	frameshift_variant	HIGH	DNApol-gamma35	exon_1	DNApol-gamma35	FBgn0004407
A373R3	2L	14097396	GCA	'G'	GAAAGCACA	INS	GAAAGCACA	0.135	strelka	downstream_gene_variant	MODIFIER	nAChRalpha5	intergenic	intergenic	intergenic
A373R3	2L	14386259	AT	'A'	GACAATCGC	INS	GACAATCGC	0.0492	mutect2	downstream_gene_variant	MODIFIER	elB	intergenic	intergenic	intergenic
A373R3	2L	16768759	GA	'G'	TATCGATCA	INS	TATCGATCA	0.0889	strelka	frameshift_variant	HIGH	Mhc	exon_1	Mhc	FBgn0264695
A373R3	2L	17070393	G	'GT'	AATAGTTTT	INS	AAAACTATT	0.135	strelka	intergenic_region	MODIFIER	CG15136-CR43819	intergenic	intergenic	intergenic
A373R3	2L	17270686	TCA	'T'	CGAATCACA	INS	CGAATCACA	0.0833	strelka	intergenic_region	MODIFIER	beat-IIIc-CR45729	intergenic	intergenic	intergenic
A373R3	2L	17297629	GT	'G'	ATGGGTAAA	INS	ATGGGTAAA	0.333	strelka	intergenic_region	MODIFIER	CG6380-CG34170	intergenic	intergenic	intergenic
A373R3	2L	17741506	CA	'C'	ATGGCAAAA	INS	ATGGCAAAA	0.103	strelka	intron_variant	MODIFIER	CadN	intron	CadN	FBgn0015609
A373R3	2L	17786020	GC	'G'	AGTTGCTGG	INS	AGTTGCTGG	0.0755	strelka	downstream_gene_variant	MODIFIER	CadN2	intergenic	intergenic	intergenic
A373R3	2L	17790549	CGGAATAGTGAAAACAAA	'C'	TTCCCGGAA	INS	TTCCCGGAA	0.321	strelka	upstream_gene_variant	MODIFIER	CR43419	intron	CadN2	FBgn0262018
A373R3	2L	18968164	TC	'T'	TAAATCAGG	INS	TAAATCAGG	0.0597	mutect2,strelka	upstream_gene_variant	MODIFIER	Tango6	intron	Nak	FBgn0015772
A373R3	2L	19537344	TA	'T'	CAAATAAAA	INS	CAAATAAAA	0.167	strelka	3_prime_UTR_variant	MODIFIER	CG33116	3UTR	CG33116	FBgn0053116
A373R3	2L	21286406	CT	'C'	GATACTTTA	INS	GATACTTTA	0.138	strelka	frameshift_variant	HIGH	Mio	exon	Mondo	FBgn0032940
A373R3	2L	21291184	TG	'T'	AAATTGGTT	INS	AAATTGGTT	0.0645	strelka	frameshift_variant	HIGH	Gr39a	exon_1	Gr39a	FBgn0264556
A373R3	2L	21814086	GA	'G'	AGTCGAAAA	INS	AGTCGAAAA	0.143	strelka	intergenic_region	MODIFIER	CR44269-CR44786	intergenic	intergenic	intergenic
A373R3	2L	21951727	CT	'C'	GGAACTAAT	INS	GGAACTAAT	0.08	strelka	upstream_gene_variant	MODIFIER	CR45704	intergenic	intergenic	intergenic
A373R3	2R	5086565	TATTG	'T'	GAACTATTG	INS	GAACTATTG	0.1	strelka	upstream_gene_variant	MODIFIER	CR43360	intergenic	intergenic	intergenic
A373R3	2R	6564722	C	'CT'	CTTGCTCCC	INS	CTTGCTCCC	0.0588	mutect2	intron_variant	MODIFIER	jing	intron	jing	FBgn0086655
A373R3	2R	8090115	CT	'C'	TTAGCTTTG	INS	TTAGCTTTG	0.0909	mutect2	frameshift_variant	HIGH	sut3	exon_2	sut3	FBgn0028561
A373R3	2R	9076204	T	'TAAAAATGA'	TCCTTTTTA	INS	TCCTTTTTA	0.167	strelka	upstream_gene_variant	MODIFIER	CR45924	intron	ana	FBgn0011746
A373R3	2R	9736612	A	'AT'	GGAGATTTT	INS	AAAATCTCC	0.1	strelka	intron_variant	MODIFIER	sqa	intron	sqa	FBgn0259678
A373R3	2R	10349405	CT	'C'	AGGACTAGT	INS	AGGACTAGT	0.0667	mutect2	upstream_gene_variant	MODIFIER	CG12907	intron	CG42732	FBgn0261698
A373R3	2R	10354406	GTTGGTCAATCAGACT	'G'	TGTGGTTGG	INS	TGTGGTTGG	0.207	strelka	upstream_gene_variant	MODIFIER	CG43172	intron	CG42732	FBgn0261698
A373R3	2R	10670376	G	'GCCCCC'	ATCTGCCCC	INS	GGGGCAGAT	0.179	mutect2	upstream_gene_variant	MODIFIER	stan	intergenic	intergenic	intergenic
A373R3	2R	10670376	G	'GCCCCCC'	ATCTGCCCC	INS	GGGGCAGAT	0.179	mutect2	upstream_gene_variant	MODIFIER	stan	intergenic	intergenic	intergenic
A373R3	2R	11313330	ATT	'A'	TGAAATTTA	INS	TGAAATTTA	0.0278	mutect2	downstream_gene_variant	MODIFIER	CG7745	intron	nompA	FBgn0016047
A373R3	2R	17075756	AGCT	'A'	TTGTAGCTG	INS	TTGTAGCTG	0.0645	strelka	disruptive_inframe_deletion	MODERATE	CG30460	exon_1	CG30460	FBgn0050460
A373R3	2R	17132493	AC	'A'	GCTAACCAT	INS	GCTAACCAT	0.0833	mutect2	upstream_gene_variant	MODIFIER	CR45273	intergenic	intergenic	intergenic
A373R3	2R	17483449	A	'ATT'	TACAATTTA	INS	TAAATTGTA	0.039	mutect2	upstream_gene_variant	MODIFIER	NT5E-2	intron	CG43110	FBgn0262570
A373R3	2R	17971148	ATGTGTATCCCAT	'A'	ACATATGTG	INS	ACATATGTG	0.188	strelka	downstream_gene_variant	MODIFIER	dpr13	intergenic	intergenic	intergenic
A373R3	2R	18123444	T	'TA'	GCGATAAAA	INS	GCGATAAAA	0.0952	strelka	upstream_gene_variant	MODIFIER	Spn55B	intron	stau	FBgn0003520
A373R3	2R	19810330	CAAG	'C'	GGACCAAGA	INS	GGACCAAGA	0.0794	strelka	intergenic_region	MODIFIER	tRNA:K2:56EF-Obp56h	intergenic	intergenic	intergenic
A373R3	2R	22323810	TA	'T'	AAGCTAAAG	INS	AAGCTAAAG	0.0625	strelka	upstream_gene_variant	MODIFIER	CR44756	intron	Gp150	FBgn0013272
A373R3	2R	23178063	GTGT	'G'	TTCAGTGTT	INS	TTCAGTGTT	0.0784	strelka	intron_variant	MODIFIER	CG34371	intron	CG34371	FBgn0085400
A373R3	2R	23479816	TG	'T'	GAAATGGGG	INS	GAAATGGGG	0.106	mutect2	upstream_gene_variant	MODIFIER	CG13557	intron	CG43795	FBgn0264339
A373R3	2R	25162759	CGCTGGT	'C'	GTTACGCTG	INS	GTTACGCTG	0.429	mutect2,strelka	upstream_gene_variant	MODIFIER	CG34038	intergenic	intergenic	intergenic
A373R3	3L	842990	ACC	'A'	AGCTACCCC	INS	AGCTACCCC	0.2	strelka	upstream_gene_variant	MODIFIER	CG13902	intron	Gr61a	FBgn0035167
A373R3	3L	1321285	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.106	strelka	upstream_gene_variant	MODIFIER	Myo61F	intron	Myo61F	FBgn0010246
A373R3	3L	2873084	G	'GT'	TCTCGTTTT	INS	AAAACGAGA	0.14	strelka	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A373R3	3L	3946559	A	'AAAAAAGATTATTATAC'	ACTCAAAAT	INS	ATTTTGAGT	0.19	strelka	3_prime_UTR_variant	MODIFIER	CG14982	3UTR	CG14982	FBgn0035477
A373R3	3L	4289195	CTA	'C'	TATGCTATA	INS	TATGCTATA	0.0513	mutect2	upstream_gene_variant	MODIFIER	CG1319	intron	Hexo1	FBgn0041630
A373R3	3L	4300080	A	'AT'	CTACAATTA	INS	TAATTGTAG	0.32	strelka	upstream_gene_variant	MODIFIER	dyl	intron	dyl	FBgn0066365
A373R3	3L	4300108	AAGCCCATTGAG	'A'	TTTTAAGCC	INS	TTTTAAGCC	0.143	strelka	upstream_gene_variant	MODIFIER	dyl	intron	dyl	FBgn0066365
A373R3	3L	4483098	TC	'T'	TGAGTCCAG	INS	TGAGTCCAG	0.0625	mutect2	frameshift_variant	HIGH	CG11350	exon	CG11350	FBgn0035552
A373R3	3L	5656993	T	'TC'	CGATTCCAC	INS	CGATTCCAC	0.0702	strelka	upstream_gene_variant	MODIFIER	sif	intron	lin-28	FBgn0035626
A373R3	3L	5804899	CA	'C'	AGGGCAAGC	INS	AGGGCAAGC	0.0725	mutect2	frameshift_variant	HIGH	CG42272	exon_2	CG42272	FBgn0259167
A373R3	3L	6131960	TTA	'T'	ATATTTATC	INS	ATATTTATC	0.0652	mutect2	frameshift_variant	HIGH	Cpr65Au	exon_1	Cpr65Au	FBgn0042119
A373R3	3L	6727629	G	'GT'	AACCGCTTC	INS	GAAGCGGTT	0.098	mutect2	upstream_gene_variant	MODIFIER	CR44523	intergenic	intergenic	intergenic
A373R3	3L	6899515	A	'AC'	ACACAAACA	INS	TGTTTGTGT	0	consensus	intergenic_region	MODIFIER	CR45416-Prat2	intergenic	intergenic	intergenic
A373R3	3L	7826757	C	'CGTTGCTGCTGCTGCTGCTGCTACT'	AGCACGTTG	INS	AGCACGTTG	0.114	strelka	5_prime_UTR_variant	MODIFIER	Pdp1	5UTR	Pdp1	FBgn0016694
A373R3	3L	8167831	CA	'C'	CCGCCAAAA	INS	CCGCCAAAA	0.104	strelka	upstream_gene_variant	MODIFIER	CG13675	intergenic	intergenic	intergenic
A373R3	3L	8181990	GA	'G'	GATCGAAAA	INS	GATCGAAAA	0.0794	strelka	upstream_gene_variant	MODIFIER	Nmt	intron	CG7979	FBgn0035848
A373R3	3L	8708284	CA	'C'	AGGCCAAGT	INS	AGGCCAAGT	0.103	mutect2	intergenic_region	MODIFIER	CR44526-SrpRbeta	intergenic	intergenic	intergenic
A373R3	3L	8805389	TC	'T'	AGCGTCCGT	INS	AGCGTCCGT	0.0612	mutect2	frameshift_variant	HIGH	CG34427	exon_3	CG34427	FBgn0085456
A373R3	3L	9910871	CT	'C'	AGCACTTTA	INS	AGCACTTTA	0.182	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
A373R3	3L	10629476	T	'TATAA'	TAATTCAAT	INS	TAATTCAAT	0.25	strelka	upstream_gene_variant	MODIFIER	CG43127	intron	CG42536	FBgn0260644
A373R3	3L	10629480	TGTCTA	'T'	TCAATGTCT	INS	TCAATGTCT	0.237	strelka	upstream_gene_variant	MODIFIER	CG43127	intron	CG42536	FBgn0260644
A373R3	3L	12863073	AT	'A'	TATTATTTT	INS	TATTATTTT	0.093	strelka	upstream_gene_variant	MODIFIER	CG32107	intergenic	intergenic	intergenic
A373R3	3L	13051649	C	'CT'	CAAACTTTT	INS	CAAACTTTT	0.0698	mutect2	downstream_gene_variant	MODIFIER	Syx13	intergenic	intergenic	intergenic
A373R3	3L	13222781	T	'TG'	GGAGTGGGG	INS	GGAGTGGGG	0.222	strelka	upstream_gene_variant	MODIFIER	CR45098	intergenic	intergenic	intergenic
A373R3	3L	13503116	ACAG	'A'	ATGGACAGC	INS	ATGGACAGC	0.143	strelka	5_prime_UTR_variant	MODIFIER	Spt20	5UTR	Spt20	FBgn0036374
A373R3	3L	17289729	G	'GGGGGGGA'	TAAGGGGGG	INS	CCCCCCTTA	0.161	strelka	intergenic_region	MODIFIER	CR45436-mir-219	intergenic	intergenic	intergenic
A373R3	3L	19190881	C	'CA'	CACGCAAAA	INS	CACGCAAAA	0.0943	strelka	intron_variant	MODIFIER	fz2	intron	fz2	FBgn0016797
A373R3	3L	20400335	AT	'A'	AGCCATATG	INS	AGCCATATG	0.0909	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45677	intron	trbl	FBgn0028978
A373R3	3L	22156479	C	'CT'	ATCTCTTTT	INS	ATCTCTTTT	0.13	strelka	intron_variant	MODIFIER	olf413	intron	olf413	FBgn0037153
A373R3	3L	24157998	C	'CA'	AAGCCAAAA	INS	AAGCCAAAA	0.152	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A373R3	3L	24169218	C	'CA'	CGATCAAAA	INS	CGATCAAAA	0.148	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A373R3	3R	1612753	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.22	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R3	3R	2613614	G	'GA'	GGAGGAAAA	INS	TTTTCCTCC	0.125	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A373R3	3R	4935316	CCT	'C'	AAGTCCTCT	INS	AAGTCCTCT	0.0727	mutect2	frameshift_variant	HIGH	Cdep	exon	Cdep	FBgn0265082
A373R3	3R	7634835	C	'CA'	TCAGCAAAA	INS	TCAGCAAAA	0.214	strelka	intron_variant	MODIFIER	CG34127	intron	Nlg3	FBgn0083963
A373R3	3R	8454842	C	'CA'	CGACCAAAA	INS	CGACCAAAA	0.0845	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
A373R3	3R	10096687	CA	'C'	GAACCAAAA	INS	GAACCAAAA	0.162	strelka	upstream_gene_variant	MODIFIER	mir-277	exon_1	CR43459	FBgn0263413
A373R3	3R	12724981	A	'AT'	TGAAATTCC	INS	GGAATTTCA	0.0755	strelka	upstream_gene_variant	MODIFIER	Men	intergenic	intergenic	intergenic
A373R3	3R	12954772	T	'TCA'	ATCATCACC	INS	ATCATCACC	0.0714	mutect2	intron_variant	MODIFIER	grsm	intron	grsm	FBgn0040493
A373R3	3R	13115946	CTG	'C'	GTGGCTGTG	INS	GTGGCTGTG	0.125	strelka	intron_variant	MODIFIER	timeout	intron	timeout	FBgn0038118
A373R3	3R	13210827	TTA	'T'	TCATTTAAA	INS	TCATTTAAA	0.0667	strelka	intron_variant	MODIFIER	CG8483	intron	CG8483	FBgn0038126
A373R3	3R	13946285	C	'CCT'	GATTCCTCT	INS	GATTCCTCT	0.12	mutect2	upstream_gene_variant	MODIFIER	Art9	intergenic	intergenic	intergenic
A373R3	3R	14046588	T	'TGGCATAC'	CCTTTTGCT	INS	CCTTTTGCT	0.3	strelka	upstream_gene_variant	MODIFIER	tRNA:S2b:88A	intergenic	intergenic	intergenic
A373R3	3R	15197714	TA	'T'	CCAATAAAA	INS	CCAATAAAA	0.114	strelka	upstream_gene_variant	MODIFIER	CG6752	intron	CG42542	FBgn0260659
A373R3	3R	16012279	CG	'C'	ATTGCGTCG	INS	ATTGCGTCG	0.0508	mutect2	5_prime_UTR_variant	MODIFIER	GATAe	5UTR	GATAe	FBgn0038391
A373R3	3R	16225436	A	'ATAT'	AGTTAAAGG	INS	CCTTTAACT	0.229	strelka	upstream_gene_variant	MODIFIER	tara	intergenic	intergenic	intergenic
A373R3	3R	16267242	T	'TGA'	GCAATGAGA	INS	GCAATGAGA	0.0517	mutect2	frameshift_variant	HIGH	Mst89B	exon_2	Mst89B	FBgn0020399
A373R3	3R	17659435	C	'CTT'	ATTTCTTTT	INS	ATTTCTTTT	0.0526	mutect2	upstream_gene_variant	MODIFIER	tRNA:CR31575	intron	CG14322	FBgn0038532
A373R3	3R	18174892	A	'AC'	CAGAACGGT	INS	ACCGTTCTG	0.0612	mutect2	frameshift_variant	HIGH	PP2A-B'	exon_3	PP2A-B'	FBgn0042693
A373R3	3R	18462633	CT	'C'	TCGTCTTTT	INS	TCGTCTTTT	0.0781	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
A373R3	3R	19030628	AG	'A'	GAGCAGGAA	INS	GAGCAGGAA	0.0746	mutect2	frameshift_variant	HIGH	Prp18	exon	Prp18	FBgn0027784
A373R3	3R	21600519	GT	'G'	TTTCGTATT	INS	TTTCGTATT	0.0408	mutect2	intron_variant	MODIFIER	InR	intron	InR	FBgn0283499
A373R3	3R	21702198	CA	'C'	AACGCAAAA	INS	AACGCAAAA	0.207	strelka	intron_variant	MODIFIER	CG31176	intron	CG31176	FBgn0051176
A373R3	3R	21776567	GT	'G'	GCGGGTCTC	INS	GCGGGTCTC	0.0784	strelka	frameshift_variant	HIGH	CG6800	exon_2	CG6800	FBgn0038902
A373R3	3R	24377961	GT	'G'	CTCTGTTTT	INS	CTCTGTTTT	0.235	strelka	upstream_gene_variant	MODIFIER	CG17781	intergenic	intergenic	intergenic
A373R3	3R	24531390	GT	'G'	GCGGGTGTA	INS	GCGGGTGTA	0.0625	mutect2	frameshift_variant	HIGH	ana1	exon_2	ana1	FBgn0262167
A373R3	3R	24923006	AG	'A'	GTCCAGAAG	INS	GTCCAGAAG	0.0556	mutect2	frameshift_variant	HIGH	Mink	exon_2	Mink	FBgn0039250
A373R3	3R	25952205	GA	'G'	TGTAGAAGA	INS	TGTAGAAGA	0.0811	mutect2	intron_variant	MODIFIER	CCAP-R	intron	CCAP-R	FBgn0039396
A373R3	3R	26004553	C	'CA'	TGAACAAAA	INS	TGAACAAAA	0.179	strelka	downstream_gene_variant	MODIFIER	E(spl)mgamma-HLH	exon_1	CR45038	FBgn0266398
A373R3	3R	26229630	CCT	'C'	TTTTCCTCT	INS	TTTTCCTCT	0.0667	strelka	upstream_gene_variant	MODIFIER	CG12290	ncRNA	CR44320	FBgn0265379
A373R3	3R	28173529	AC	'A'	TTTGACCTT	INS	TTTGACCTT	0.143	strelka	intron_variant	MODIFIER	CG34354	intron	CG34354	FBgn0085383
A373R3	3R	30740124	GGGTGGC	'G'	GTTGGGGTG	INS	GTTGGGGTG	0.188	strelka	upstream_gene_variant	MODIFIER	CG15543	intergenic	intergenic	intergenic
A373R3	3R	30993085	TA	'T'	AAATTAGGC	INS	AAATTAGGC	0.105	mutect2	upstream_gene_variant	MODIFIER	CG31008	exon_1	CR46117	FBgn0267786
A373R3	3R	31055188	GT	'G'	TTAAGTTTT	INS	TTAAGTTTT	0.148	strelka	3_prime_UTR_variant	MODIFIER	dco	3UTR	dco	FBgn0002413
A373R3	3R	31376663	C	'CA'	TGTCCAAAT	INS	TGTCCAAAT	0.114	strelka	downstream_gene_variant	MODIFIER	CG34347	intergenic	intergenic	intergenic
A373R3	3R	31823827	A	'ACC'	CCTGACCAC	INS	GTGGTCAGG	0.0556	mutect2	upstream_gene_variant	MODIFIER	RhoGAP100F	intron	RhoGAP100F	FBgn0039883
A373R3	3R	31973189	CA	'C'	CTAACAAAA	INS	CTAACAAAA	0.114	strelka	upstream_gene_variant	MODIFIER	CG2003	intron	heph	FBgn0011224
A373R3	4	1081141	G	'GT'	ATTAGTTTT	INS	AAAACTAAT	0.277	mutect2,strelka	frameshift_variant	HIGH	Actbeta	exon_3	Actbeta	FBgn0024913
A373R3	X	511555	TA	'T'	TATGTAAAA	INS	TATGTAAAA	0.107	strelka	3_prime_UTR_variant	MODIFIER	elav	intron	arg	FBgn0023535
A373R3	X	663937	TA	'T'	CGAATAAAA	INS	CGAATAAAA	0.12	strelka	intergenic_region	MODIFIER	SkpA-sdk	intergenic	intergenic	intergenic
A373R3	X	677327	GT	'G'	TTCGGTTTT	INS	TTCGGTTTT	0.217	strelka	intergenic_region	MODIFIER	SkpA-sdk	intergenic	intergenic	intergenic
A373R3	X	1018454	GT	'G'	GGATGTTTT	INS	GGATGTTTT	0.148	strelka	downstream_gene_variant	MODIFIER	CG32814	intron	CG11638	FBgn0040351
A373R3	X	1212710	AAG	'A'	TAGGAAGAA	INS	TAGGAAGAA	0.0667	mutect2	3_prime_UTR_variant	MODIFIER	CG11398	3UTR	CG11398	FBgn0040366
A373R3	X	1387567	ATG	'A'	ACAGATGTA	INS	ACAGATGTA	0.0909	mutect2	upstream_gene_variant	MODIFIER	CG32813	intron	CG32813	FBgn0052813
A373R3	X	1651704	ACTGAGTACTGAGTACTGAGTC	'A'	GAGTACTGA	INS	GAGTACTGA	0	consensus	upstream_gene_variant	MODIFIER	CG11509	3UTR	br	FBgn0283451
A373R3	X	2010455	CA	'C'	ACAACAAAT	INS	ACAACAAAT	0.12	strelka	upstream_gene_variant	MODIFIER	CG4406	intergenic	intergenic	intergenic
A373R3	X	2249562	AT	'A'	GCATATTTG	INS	GCATATTTG	0.111	strelka	frameshift_variant	HIGH	crn	exon	crn	FBgn0000377
A373R3	X	2592025	GCA	'G'	GACTGCACA	INS	GACTGCACA	0.158	strelka	upstream_gene_variant	MODIFIER	egh	intron	egh	FBgn0001404
A373R3	X	2596577	AG	'A'	GCCTAGACA	INS	GCCTAGACA	0.075	mutect2	frameshift_variant	HIGH	egh	exon_2	egh	FBgn0001404
A373R3	X	2766098	TA	'T'	ACAGTAAAA	INS	ACAGTAAAA	0.208	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A373R3	X	3193678	TG	'T'	GCTCTGCGA	INS	GCTCTGCGA	0.15	strelka	intron_variant	MODIFIER	dnc	intron	dnc	FBgn0000479
A373R3	X	3552932	T	'TTTTA'	TATTTTTTA	INS	TATTTTTTA	0.222	strelka	upstream_gene_variant	MODIFIER	ppk8	intron	DIP-alpha	FBgn0052791
A373R3	X	3845252	GT	'G'	CGGGGTTTT	INS	CGGGGTTTT	0.129	strelka	upstream_gene_variant	MODIFIER	ec	intron	ec	FBgn0000542
A373R3	X	4435144	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.2	strelka	intron_variant	MODIFIER	CR32773	intron	bi	FBgn0000179
A373R3	X	4796840	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.13	strelka	downstream_gene_variant	MODIFIER	CG2861	intergenic	intergenic	intergenic
A373R3	X	5121891	TAC	'T'	CAAATACAC	INS	CAAATACAC	0.2	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A373R3	X	5172173	GA	'G'	CACGGAAAA	INS	CACGGAAAA	0.115	mutect2	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A373R3	X	5245213	TCA	'T'	TCACTCACA	INS	TCACTCACA	0.154	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A373R3	X	5796094	AAC	'A'	CCCAAACAC	INS	CCCAAACAC	0.15	strelka	upstream_gene_variant	MODIFIER	CR44832	intergenic	intergenic	intergenic
A373R3	X	6368096	TC	'T'	ACAATCTCT	INS	ACAATCTCT	0.103	mutect2,strelka	upstream_gene_variant	MODIFIER	swaPsi	intron	Marf	FBgn0029870
A373R3	X	6638825	GGA	'G'	TGAAGGAAG	INS	TGAAGGAAG	0.0952	mutect2	downstream_gene_variant	MODIFIER	CG14443	intron	pigs	FBgn0029881
A373R3	X	6738804	C	'CG'	GTGCCGAAA	INS	GTGCCGAAA	0.13	strelka	downstream_gene_variant	MODIFIER	CR43461	intron	CG3168	FBgn0029896
A373R3	X	6803304	GAGT	'G'	GCTTGAGTA	INS	GCTTGAGTA	0.08	mutect2	5_prime_UTR_variant	MODIFIER	C3G	5UTR	C3G	FBgn0259228
A373R3	X	7089726	CA	'C'	ACCCCAAAA	INS	ACCCCAAAA	0.156	strelka	upstream_gene_variant	MODIFIER	mir-4956	intron	Sxl	FBgn0264270
A373R3	X	7123437	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.208	strelka	upstream_gene_variant	MODIFIER	CR45532	intergenic	intergenic	intergenic
A373R3	X	7617391	CT	'C'	TTTGCTTTT	INS	TTTGCTTTT	0.207	strelka	intron_variant	MODIFIER	ct	intron	ct	FBgn0004198
A373R3	X	7763870	CTT	'C'	ATCGCTTTG	INS	ATCGCTTTG	0.125	mutect2	upstream_gene_variant	MODIFIER	Ir7a	intergenic	intergenic	intergenic
A373R3	X	8050914	GT	'G'	TTTGGTTTT	INS	TTTGGTTTT	0.259	strelka	intron_variant	MODIFIER	fs(1)h	intron	fs(1)h	FBgn0004656
A373R3	X	8360868	GCA	'G'	TCCCGCACA	INS	TCCCGCACA	0.235	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
A373R3	X	8610940	CT	'C'	TGCCCTTTT	INS	TGCCCTTTT	0.167	strelka	upstream_gene_variant	MODIFIER	Caf1-180	intergenic	intergenic	intergenic
A373R3	X	8974319	GCT	'G'	GATAGCTCT	INS	GATAGCTCT	0.158	strelka	upstream_gene_variant	MODIFIER	CG10962	ncRNA	CR43836	FBgn0264384
A373R3	X	9498507	C	'CG'	CGAGCGGGG	INS	CGAGCGGGG	0.143	strelka	upstream_gene_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
A373R3	X	11464036	CA	'C'	CAATCAAAA	INS	CAATCAAAA	0.147	strelka	downstream_gene_variant	MODIFIER	HP5	intron	CG43155	FBgn0262685
A373R3	X	11818061	C	'CA'	CGCGCAAAA	INS	CGCGCAAAA	0.148	strelka	upstream_gene_variant	MODIFIER	CG1578	intron	rudhira	FBgn0266019
A373R3	X	11882490	ATG	'A'	GTAAATGTG	INS	GTAAATGTG	0.158	strelka	upstream_gene_variant	MODIFIER	SelG	intron	CG10353	FBgn0030349
A373R3	X	12151359	A	'AT'	TACTATTTT	INS	AAAATAGTA	0.174	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
A373R3	X	12842007	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.1	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
A373R3	X	13068014	ATAT	'A'	GGATATATT	INS	GGATATATT	0.13	mutect2	intron_variant	MODIFIER	rad	intron	rad	FBgn0265597
A373R3	X	13407625	GC	'G'	GGAGGCCTC	INS	GGAGGCCTC	0.148	strelka	upstream_gene_variant	MODIFIER	CG12725	intron	GstT4	FBgn0030484
A373R3	X	13739136	TA	'T'	TTACTAACT	INS	TTACTAACT	0.115	strelka	3_prime_UTR_variant	MODIFIER	CG11134	3UTR	CG11134	FBgn0030518
A373R3	X	14480635	T	'TCC'	GGTTTCCCA	INS	GGTTTCCCA	0.114	strelka	upstream_gene_variant	MODIFIER	CG9411	intergenic	intergenic	intergenic
A373R3	X	15127670	CA	'C'	CTCCCAAAA	INS	CTCCCAAAA	0.235	strelka	intron_variant	MODIFIER	drd	intron	drd	FBgn0260006
A373R3	X	15276446	T	'TAC'	GGGGTACAC	INS	GGGGTACAC	0.167	strelka	upstream_gene_variant	MODIFIER	CG9106	intergenic	intergenic	intergenic
A373R3	X	15421177	C	'CT'	ATGGCTTTT	INS	ATGGCTTTT	0.267	strelka	5_prime_UTR_variant	MODIFIER	Cngl	5UTR	Cngl	FBgn0263257
A373R3	X	15892741	AT	'A'	GTCAATTTT	INS	GTCAATTTT	0.182	strelka	upstream_gene_variant	MODIFIER	MSBP	intron	shi	FBgn0003392
A373R3	X	16171042	GT	'G'	ATCTGTGCG	INS	ATCTGTGCG	0.115	strelka	intergenic_region	MODIFIER	disco-r-mir-985	intergenic	intergenic	intergenic
A373R3	X	16231511	CTG	'C'	GTTTCTGTG	INS	GTTTCTGTG	0.158	strelka	intergenic_region	MODIFIER	disco-snRNA:U5:14B	intergenic	intergenic	intergenic
A373R3	X	16769277	TA	'T'	GCCATAAAA	INS	GCCATAAAA	0.25	strelka	intron_variant	MODIFIER	if	intron	if	FBgn0001250
A373R3	X	16820068	GTT	'G'	ATATGTTTA	INS	ATATGTTTA	0.0769	mutect2	upstream_gene_variant	MODIFIER	CR44129	intron	CG4829	FBgn0030796
A373R3	X	17926000	GT	'G'	AATAGTTTT	INS	AATAGTTTT	0.167	strelka	3_prime_UTR_variant	MODIFIER	Sh	exon_13	Sh	FBgn0003380
A373R3	X	18132272	CTG	'C'	GGTTCTGTG	INS	GGTTCTGTG	0.125	strelka	3_prime_UTR_variant	MODIFIER	ari-1	3UTR	ari-1	FBgn0017418
A373R3	X	18439935	AC	'A'	TTCTACCCG	INS	TTCTACCCG	0.154	strelka	frameshift_variant	HIGH	CG43841	exon	CG43841	FBgn0264393
A373R3	X	18667871	CATT	'C'	CGAGCATTA	INS	CGAGCATTA	0.0952	mutect2	downstream_gene_variant	MODIFIER	CR45514	intergenic	intergenic	intergenic
A373R3	X	18917462	GCA	'G'	AGCAGCACA	INS	AGCAGCACA	0.118	strelka	downstream_gene_variant	MODIFIER	CR44708	intergenic	intergenic	intergenic
A373R3	X	19246147	CG	'C'	CCGGCGAAG	INS	CCGGCGAAG	0.12	strelka	frameshift_variant	HIGH	CG7992	exon	CG7992	FBgn0031004
A373R3	X	20509162	C	'CA'	TAAACAAAA	INS	TAAACAAAA	0.182	strelka	upstream_gene_variant	MODIFIER	CG1812	intron	RhoGAP19D	FBgn0031118
A373R3	X	20687765	CA	'C'	AATACAAGC	INS	AATACAAGC	0.143	strelka	upstream_gene_variant	MODIFIER	run	intergenic	intergenic	intergenic
A373R3	X	21260281	CA	'C'	GTATCAAAC	INS	GTATCAAAC	0.214	strelka	intron_variant	MODIFIER	CG32521	intron	CG32521	FBgn0052521
A373R3	X	21948459	G	'GCCAA'	TTTTGGGTT	INS	AACCCAAAA	0.308	strelka	intergenic_region	MODIFIER	flam-CG40813	intergenic	intergenic	intergenic
A373R3	X	23263827	CA	'C'	CTGACAAAA	INS	CTGACAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	28SrRNA-Psi:CR41609	intergenic	intergenic	intergenic
A373R3	Y	543680	G	'GA'	AAGAGAAAT	INS	ATTTCTCTT	0.167	strelka	intron_variant	MODIFIER	kl-3	intron	kl-3	FBgn0267432
A373R3	Y	594356	CGCG	'C'	TGAGCGCGG	INS	TGAGCGCGG	0.29	strelka	intron_variant	MODIFIER	kl-2	intron	kl-2	FBgn0001313
A373R3	Y	739084	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.167	strelka	intergenic_region	MODIFIER	ARY-Su(Ste):CR42422	intergenic	intergenic	intergenic
A373R5	211000022278880	458	ACTCTCTTAAGGT	'A'		INS		0.0312	strelka	non_coding_transcript_exon_variant	MODIFIER	CR41544	exon_1	CR41544	FBgn0085799
A373R5	2L	1615434	CAGTAACCACTTGTTATGTTCCAATATTTG	'C'	CAAACAGTA	INS	CAAACAGTA	0.148	strelka	upstream_gene_variant	MODIFIER	CG31935	intergenic	intergenic	intergenic
A373R5	2L	2084190	G	'GA'	CACTGAAAA	INS	TTTTCAGTG	0.0769	strelka	downstream_gene_variant	MODIFIER	CG12674	exon_1	CR44055	FBgn0264864
A373R5	2L	2652281	GT	'G'	CAGCGTAAA	INS	CAGCGTAAA	0.0492	mutect2	frameshift_variant	HIGH	CG33125	exon_1	CG33125	FBgn0053125
A373R5	2L	5362422	A	'AC'	AAAAAAAAA	INS	TTTTTTTTT	0.146	strelka	intron_variant	MODIFIER	nompC	intron	nompC	FBgn0016920
A373R5	2L	5546019	CA	'C'	ACAACAACA	INS	ACAACAACA	0.125	strelka	3_prime_UTR_variant	MODIFIER	Lam	3UTR	Lam	FBgn0002525
A373R5	2L	6243408	TG	'T'	TGTGTGCAC	INS	TGTGTGCAC	0.0417	mutect2	intergenic_region	MODIFIER	CR44823-Ddr	intergenic	intergenic	intergenic
A373R5	2L	6313195	AAGT	'A'	AAGTAAGTA	INS	AAGTAAGTA	0.298	strelka	upstream_gene_variant	MODIFIER	CG43922	intron	Ddr	FBgn0053531
A373R5	2L	6313201	A	'ACGCTG'	GTAAAAGTG	INS	CACTTTTAC	0.326	strelka	upstream_gene_variant	MODIFIER	CG43922	intron	Ddr	FBgn0053531
A373R5	2L	7033368	A	'ATG'	CGTAATATT	INS	AATATTACG	0.227	mutect2	upstream_gene_variant	MODIFIER	Rab30	intron	Caper	FBgn0031883
A373R5	2L	7033368	A	'ATGT'	CGTAATATT	INS	AATATTACG	0.227	mutect2	upstream_gene_variant	MODIFIER	Rab30	intron	Caper	FBgn0031883
A373R5	2L	9401487	GGGTA	'G'	ATGGGGGTA	INS	ATGGGGGTA	0.267	strelka	upstream_gene_variant	MODIFIER	CG4438	intron	Shawl	FBgn0085395
A373R5	2L	10799449	CA	'C'	AAGGCAAAA	INS	AAGGCAAAA	0.0877	strelka	downstream_gene_variant	MODIFIER	CR44581	intron	CG31869	FBgn0051869
A373R5	2L	12142853	TGTGTGA	'T'	TGTGTGTGT	INS	TGTGTGTGT	0.0645	mutect2	splice_donor_variant&splice_region_variant&5_prime_UTR_variant&intron_variant	HIGH	CG31760	exon_1	CG31760	FBgn0051760
A373R5	2L	12225510	TTTGA	'T'	AATATTTGA	INS	AATATTTGA	0.19	strelka	intron_variant	MODIFIER	aret	intron	bru1	FBgn0000114
A373R5	2L	12861355	CT	'C'	TAAGCTTTT	INS	TAAGCTTTT	0.0602	strelka	intergenic_region	MODIFIER	CR44971-ACXC	intergenic	intergenic	intergenic
A373R5	2L	18047424	TA	'T'	GGCTTAGCT	INS	GGCTTAGCT	0.0577	mutect2	intron_variant	MODIFIER	rdo	intron	rdo	FBgn0243486
A373R5	2L	18594838	TA	'T'	TACTTATGG	INS	TACTTATGG	0.0714	mutect2	3_prime_UTR_variant	MODIFIER	CG15160	3UTR	CG15160	FBgn0032688
A373R5	2R	1334631	CA	'C'	GTCCCAAAA	INS	GTCCCAAAA	0.0685	strelka	intergenic_region	MODIFIER	CG40191-Yeti	intergenic	intergenic	intergenic
A373R5	2R	3079121	TTA	'T'	CCAATTATA	INS	CCAATTATA	0.227	strelka	intron_variant	MODIFIER	CG42596	intron	dpr21	FBgn0260995
A373R5	2R	9015249	ATTTTT	'A'	TTATATTTT	INS	TTATATTTT	0.143	strelka	upstream_gene_variant	MODIFIER	CG8172	intron	CG13744	FBgn0033363
A373R5	2R	9086670	GT	'G'	GGCAGTTTT	INS	GGCAGTTTT	0.0645	strelka	frameshift_variant	HIGH	CG13742	exon_5	CG13742	FBgn0033372
A373R5	2R	10401651	C	'CA'	AACACTTTT	INS	AACACTTTT	0.0909	strelka	intron_variant	MODIFIER	CG42732	intron	CG42732	FBgn0261698
A373R5	2R	10727308	AG	'A'	CGGGAGGGG	INS	CGGGAGGGG	0.0816	strelka	upstream_gene_variant	MODIFIER	CG7220	intron	Rab3	FBgn0005586
A373R5	2R	10749869	GT	'G'	AGTCGTTTT	INS	AGTCGTTTT	0.292	strelka	intron_variant	MODIFIER	CG33144	intron	CG33144	FBgn0053144
A373R5	2R	12923424	CT	'C'	TCATCTTTT	INS	TCATCTTTT	0.0656	strelka	3_prime_UTR_variant	MODIFIER	NAT1	3UTR	NAT1	FBgn0010488
A373R5	2R	13370511	TCC	'T'	CCCATCCAC	INS	CCCATCCAC	0.156	strelka	intergenic_region	MODIFIER	CR45312-CG10814	intergenic	intergenic	intergenic
A373R5	2R	13753639	G	'GTTTTTTTT'	TTTGGTTTT	INS	AAAACCAAA	0.118	mutect2	upstream_gene_variant	MODIFIER	CG6280	intergenic	intergenic	intergenic
A373R5	2R	14923677	T	'TTTG'	ATTTTTTTT	INS	ATTTTTTTT	0.143	mutect2	intron_variant	MODIFIER	CG10249	intron	Kank	FBgn0027596
A373R5	2R	15605863	C	'CGGGGGACTTGG'	GCAGCGGTG	INS	GCAGCGGTG	0.19	strelka	intergenic_region	MODIFIER	CG8204-CG42524	intergenic	intergenic	intergenic
A373R5	2R	17329123	CTA	'C'	TAAACTATA	INS	TAAACTATA	0.0517	mutect2	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
A373R5	2R	18889125	GA	'G'	GTAGGAAAA	INS	GTAGGAAAA	0.0889	strelka	intron_variant	MODIFIER	sano	intron	sano	FBgn0034408
A373R5	2R	20639783	CG	'C'	ATGTCGAAA	INS	ATGTCGAAA	0.114	strelka	frameshift_variant	HIGH	rig	exon_1	rig	FBgn0250850
A373R5	2R	21469369	ACT	'A'	ACACACTCA	INS	ACACACTCA	0.0492	mutect2	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
A373R5	2R	24117744	GT	'G'	ATAGGTTTT	INS	ATAGGTTTT	0.139	strelka	upstream_gene_variant	MODIFIER	CG4049	intron	CG3257	FBgn0034978
A373R5	3L	236526	AT	'A'	TTTAATTTT	INS	TTTAATTTT	0.0571	strelka	upstream_gene_variant	MODIFIER	CG42846	intron	E(bx)	FBgn0000541
A373R5	3L	976046	GAAC	'G'	CCATGAACA	INS	CCATGAACA	0.0533	strelka	intron_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
A373R5	3L	4348535	CT	'C'	CAATCTTTT	INS	CAATCTTTT	0.118	strelka	upstream_gene_variant	MODIFIER	Cip4	intron	Cip4	FBgn0035533
A373R5	3L	9723392	TA	'T'	CAGCTATCG	INS	CAGCTATCG	0.0769	mutect2	upstream_gene_variant	MODIFIER	CG18178	intergenic	intergenic	intergenic
A373R5	3L	9881926	CA	'C'	CCCCCACAC	INS	CCCCCACAC	0.222	strelka	downstream_gene_variant	MODIFIER	Taf2	intron	CG34382	FBgn0085411
A373R5	3L	10612470	A	'ATATATAT'	AAAAAATAA	INS	TTATTTTTT	0.278	strelka	intergenic_region	MODIFIER	A2bp1-CG42521	intergenic	intergenic	intergenic
A373R5	3L	11838027	AG	'A'	AAAAAGAAA	INS	AAAAAGAAA	0	consensus	upstream_gene_variant	MODIFIER	CycA	intergenic	intergenic	intergenic
A373R5	3L	12689060	GA	'G'	TGGTGAATG	INS	TGGTGAATG	0.093	mutect2,strelka	upstream_gene_variant	MODIFIER	mirr	intergenic	intergenic	intergenic
A373R5	3L	13495017	CA	'C'	AACACATAT	INS	AACACATAT	0.0769	mutect2	upstream_gene_variant	MODIFIER	Tgi	intron	Tgi	FBgn0036373
A373R5	3L	22187659	ACG	'A'	GAAGACGGG	INS	GAAGACGGG	0.0682	mutect2	intron_variant	MODIFIER	olf413	intron	olf413	FBgn0037153
A373R5	3L	22972016	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.182	strelka	intergenic_region	MODIFIER	CR45758-CG32457	intergenic	intergenic	intergenic
A373R5	3L	26643475	GT	'G'	CTAGGTTTT	INS	CTAGGTTTT	0.108	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A373R5	3R	7491863	TA	'T'	ATCTTAATT	INS	ATCTTAATT	0.1	mutect2	upstream_gene_variant	MODIFIER	alpha-Est10	intron	alpha-Est10	FBgn0015569
A373R5	3R	11303804	CGT	'C'	TGTTCGTGT	INS	TGTTCGTGT	0.143	strelka	intron_variant	MODIFIER	CR31386	ncRNA	CR31386	FBgn0051386
A373R5	3R	17486537	TG	'T'	CGTCTGATA	INS	CGTCTGATA	0.05	mutect2	intron_variant	MODIFIER	Dscam3	intron	Dscam3	FBgn0261046
A373R5	3R	17631026	GA	'G'	GAAAGAAAA	INS	GAAAGAAAA	0.128	strelka	upstream_gene_variant	MODIFIER	tRNA:V4:90C	intron	CG43175	FBgn0262794
A373R5	3R	18141918	TC	'T'	TCTTTCTTT	INS	TCTTTCTTT	0.0833	mutect2	intergenic_region	MODIFIER	sr-CG14316	intergenic	intergenic	intergenic
A373R5	3R	22549238	AT	'A'	ACCCATTCA	INS	ACCCATTCA	0.0678	strelka	upstream_gene_variant	MODIFIER	AdipoR	intergenic	intergenic	intergenic
A373R5	3R	22595795	GA	'G'	GCCGGAAAA	INS	GCCGGAAAA	0.093	mutect2	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
A373R5	3R	23325807	C	'CA'	TGCCCAAAG	INS	TGCCCAAAG	0.0806	strelka	intron_variant	MODIFIER	pnt	intron	pnt	FBgn0003118
A373R5	3R	25720808	TTGACAAA	'T'	AAATTTGAC	INS	AAATTTGAC	0.276	strelka	upstream_gene_variant	MODIFIER	LpR2	intron	LpR2	FBgn0051092
A373R5	3R	25939840	GCA	'G'	GCACGCACA	INS	GCACGCACA	0.102	strelka	intron_variant	MODIFIER	CCAP-R	intron	CCAP-R	FBgn0039396
A373R5	3R	26462866	G	'GC'	TAAAGTAAT	INS	ATTACTTTA	0.261	strelka	upstream_gene_variant	MODIFIER	CG5455	intron	CG5455	FBgn0039430
A373R5	3R	26726677	AT	'A'	GGGTATAAT	INS	GGGTATAAT	0.231	strelka	3_prime_UTR_variant	MODIFIER	CG14244	3UTR	CG14244	FBgn0040607
A373R5	3R	26726680	A	'ACACTT'	TATAATAAA	INS	TTTATTATA	0.231	strelka	splice_region_variant	LOW	CG14244	3UTR	CG14244	FBgn0040607
A373R5	3R	30809075	A	'AAAAAAC'	AAAAAAAAA	INS	TTTTTTTTT	0.208	strelka	5_prime_UTR_variant	MODIFIER	cindr	5UTR	cindr	FBgn0027598
A373R5	4	548554	GA	'G'	AAACGAATC	INS	AAACGAATC	0.0833	strelka	intron_variant	MODIFIER	Thd1	intron	Thd1	FBgn0026869
A373R5	X	256252	GA	'G'	TAGCGAAAA	INS	TAGCGAAAA	0.13	strelka	frameshift_variant	HIGH	cin	exon_2	cin	FBgn0000316
A373R5	X	1278763	GT	'G'	TCGGGTTTT	INS	TCGGGTTTT	0.156	strelka	upstream_gene_variant	MODIFIER	Atf3	intergenic	intergenic	intergenic
A373R5	X	1590567	CTG	'C'	CTTTCTGTG	INS	CTTTCTGTG	0.2	strelka	intron_variant	MODIFIER	Mur2B	intron	br	FBgn0283451
A373R5	X	2662631	ATATG	'A'	ATATATATG	INS	ATATATATG	0.133	mutect2	intron_variant	MODIFIER	sgg	intron	sgg	FBgn0003371
A373R5	X	2762410	GCTA	'G'	GGTTGCTAC	INS	GGTTGCTAC	0.118	mutect2	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A373R5	X	3308261	GCA	'G'	AAACGCACA	INS	AAACGCACA	0.188	strelka	intron_variant	MODIFIER	dnc	intron	dnc	FBgn0000479
A373R5	X	3537640	CCA	'C'	GCACCCACA	INS	GCACCCACA	0.176	strelka	intron_variant	MODIFIER	CG32791	intron	DIP-alpha	FBgn0052791
A373R5	X	3778771	TTC	'T'	TCACTTCTC	INS	TCACTTCTC	0.179	strelka	upstream_gene_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
A373R5	X	4897692	GA	'G'	AGGCGAAAA	INS	AGGCGAAAA	0.125	strelka	intron_variant	MODIFIER	CG42594	intron	CG42594	FBgn0260971
A373R5	X	6625563	TTC	'T'	TCTGTTCTT	INS	TCTGTTCTT	0	consensus	intron_variant	MODIFIER	pigs	intron	pigs	FBgn0029881
A373R5	X	7124853	ATG	'A'	TCATATGTG	INS	TCATATGTG	0.2	strelka	upstream_gene_variant	MODIFIER	CR45532	intergenic	intergenic	intergenic
A373R5	X	7224606	TTG	'T'	TTTTTTGTT	INS	TTTTTTGTT	0.185	mutect2	upstream_gene_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A373R5	X	7234776	CTT	'C'	AGGACTTTT	INS	AGGACTTTT	0.143	mutect2,strelka	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A373R5	X	8006352	CA	'C'	AACGCATTT	INS	AACGCATTT	0.12	mutect2,strelka	intron_variant	MODIFIER	Tbh	intron	Tbh	FBgn0010329
A373R5	X	8227114	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.147	strelka	upstream_gene_variant	MODIFIER	sdt	intron	sdt	FBgn0261873
A373R5	X	8480362	GT	'G'	TTTTGTTTT	INS	TTTTGTTTT	0.308	strelka	3_prime_UTR_variant	MODIFIER	Cp36	3UTR	Cp36	FBgn0000359
A373R5	X	9012768	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.222	strelka	intron_variant	MODIFIER	rdgA	ncRNA	CR43836	FBgn0264384
A373R5	X	9785628	CAG	'C'	CTTGCAGAC	INS	CTTGCAGAC	0.167	mutect2	upstream_gene_variant	MODIFIER	CG32698	intron	CG32698	FBgn0052698
A373R5	X	9815526	TTG	'T'	ACGTTTGTG	INS	ACGTTTGTG	0.192	strelka	intron_variant	MODIFIER	CG32698	intron	CG32698	FBgn0052698
A373R5	X	10767677	CT	'C'	AGAGCTTGT	INS	AGAGCTTGT	0.115	strelka	upstream_gene_variant	MODIFIER	Tango5	intron	Atg8a	FBgn0052672
A373R5	X	10818827	CCAGCAG	'C'	GCCGCCAGC	INS	GCCGCCAGC	0.158	strelka	upstream_gene_variant	MODIFIER	Imp	intron	Imp	FBgn0262735
A373R5	X	10824527	CCA	'C'	CAGCCCACA	INS	CAGCCCACA	0.241	strelka	upstream_gene_variant	MODIFIER	Imp	exon_1	CR45624	FBgn0267184
A373R5	X	13236699	AAC	'A'	AAAAAACAA	INS	AAAAAACAA	0.167	mutect2	upstream_gene_variant	MODIFIER	CG32639	intron	mew	FBgn0004456
A373R5	X	13322215	CT	'C'	GAACCTTTT	INS	GAACCTTTT	0.174	strelka	intron_variant	MODIFIER	IP3K2	intron	IP3K2	FBgn0283680
A373R5	X	13927685	GCT	'G'	TCTCGCTCT	INS	TCTCGCTCT	0.174	strelka	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
A373R5	X	14818032	GGAT	'G'	ATGGGGATG	INS	ATGGGGATG	0.174	strelka	intron_variant	MODIFIER	rut	intron	rut	FBgn0003301
A373R5	X	15582723	AAGC	'A'	AGGCAAGCC	INS	AGGCAAGCC	0.105	mutect2	conservative_inframe_deletion	MODERATE	CG9215	exon	CG9215	FBgn0030659
A373R5	X	15883237	ATGC	'A'	GCTAATGCT	INS	GCTAATGCT	0.107	strelka	disruptive_inframe_deletion	MODERATE	tay	exon_4	tay	FBgn0260938
A373R5	X	16815842	AT	'A'	CGCTATTTT	INS	CGCTATTTT	0.308	strelka	upstream_gene_variant	MODIFIER	CG4829	exon_1	CR44129	FBgn0264960
A373R5	X	16838599	CTA	'C'	GTTCCTATA	INS	GTTCCTATA	0.167	strelka	3_prime_UTR_variant	MODIFIER	RSG7	3UTR	RSG7	FBgn0024941
A373R5	X	16844200	GCA	'G'	TATGGCACA	INS	TATGGCACA	0.13	strelka	5_prime_UTR_variant	MODIFIER	RSG7	5UTR	RSG7	FBgn0024941
A373R5	X	18130237	TA	'T'	AAAGTAAAA	INS	AAAGTAAAA	0.227	strelka	upstream_gene_variant	MODIFIER	CG32553	intergenic	intergenic	intergenic
A373R5	X	18511571	AAAT	'A'	GCACAAATA	INS	GCACAAATA	0.136	strelka	upstream_gene_variant	MODIFIER	Aats-his	intron	Ggt-1	FBgn0030932
A373R5	X	19075676	GT	'G'	TCACGTTTT	INS	TCACGTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	CG7406	intergenic	intergenic	intergenic
A373R5	X	19390181	ATATGTATATG	'A'	ATATATATG	INS	ATATATATG	0.214	mutect2	intron_variant	MODIFIER	kek5	intron	kek5	FBgn0031016
A373R5	X	20351785	C	'CA'	GCAACATTT	INS	GCAACATTT	0.214	strelka	intergenic_region	MODIFIER	CG1504-CR46072	intergenic	intergenic	intergenic
A373R5	X	21054973	G	'GT'	TGCTGTTTT	INS	AAAACAGCA	0.143	strelka	upstream_gene_variant	MODIFIER	CG1518	intron	bves	FBgn0031150
A373R7	2L	152528	CT	'C'	CCTGCTTCG	INS	CCTGCTTCG	1	mutect2	frameshift_variant	HIGH	CG42399	exon_1	CG42399	FBgn0259818
A373R7	2L	279433	GGTCACTACCCCTT	'G'	GCGTGGTCA	INS	GCGTGGTCA	0.25	strelka	frameshift_variant	HIGH	smo	exon_4	smo	FBgn0003444
A373R7	2L	493594	GGA	'G'	TTTAGGAGT	INS	TTTAGGAGT	0.154	mutect2	intron_variant	MODIFIER	ush	intron	ush	FBgn0003963
A373R7	2L	1674621	CA	'C'	CCTTCACCG	INS	CCTTCACCG	0.231	mutect2,strelka	intron_variant	MODIFIER	chinmo	intron	chinmo	FBgn0086758
A373R7	2L	2167085	A	'AAAC'	GCACAAACA	INS	TGTTTGTGC	0.25	mutect2,strelka	intron_variant	MODIFIER	aop	intron	aop	FBgn0000097
A373R7	2L	2708479	A	'AT'	CCCAATTTG	INS	CAAATTGGG	0.273	strelka	intron_variant	MODIFIER	CG31690	intron	CG31690	FBgn0051690
A373R7	2L	3592713	G	'GT'	TGCTGTTTT	INS	AAAACAGCA	0.444	strelka	upstream_gene_variant	MODIFIER	CR43823	intergenic	intergenic	intergenic
A373R7	2L	3967722	TC	'T'	CATTTCCCT	INS	CATTTCCCT	0.214	strelka	intron_variant	MODIFIER	fred	intron	fred	FBgn0051774
A373R7	2L	4245677	A	'AC'	TGTAACCAT	INS	ATGGTTACA	0.2	strelka	upstream_gene_variant	MODIFIER	CR45720	intergenic	intergenic	intergenic
A373R7	2L	4310554	GA	'G'	CAACGAAAA	INS	CAACGAAAA	0.364	strelka	downstream_gene_variant	MODIFIER	tutl	intron	tutl	FBgn0010473
A373R7	2L	4633541	CA	'C'	ATTGCATAT	INS	ATTGCATAT	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	CR45452	intergenic	intergenic	intergenic
A373R7	2L	4888897	CT	'C'	GATTCTTTT	INS	GATTCTTTT	0.333	strelka	upstream_gene_variant	MODIFIER	CG15625	intergenic	intergenic	intergenic
A373R7	2L	4972545	GA	'G'	ATTGGAGAG	INS	ATTGGAGAG	0.158	strelka	frameshift_variant	HIGH	CG14043	exon	CG14043	FBgn0031659
A373R7	2L	5034730	AG	'A'	GATAAGGGA	INS	GATAAGGGA	0.429	mutect2,strelka	frameshift_variant	HIGH	Cg25C	exon_7	Col4a1	FBgn0000299
A373R7	2L	5485585	ACC	'A'	AAAAACCCA	INS	AAAAACCCA	0.5	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45287	intergenic	intergenic	intergenic
A373R7	2L	5681433	GA	'G'	GGTGGAAAA	INS	GGTGGAAAA	0.333	strelka	downstream_gene_variant	MODIFIER	CG12511	intergenic	intergenic	intergenic
A373R7	2L	5712479	CAG	'C'	CCTGCAGAA	INS	CCTGCAGAA	0.667	mutect2	splice_acceptor_variant&intron_variant	HIGH	CG7236	intron	CG7236	FBgn0031730
A373R7	2L	5867269	TTC	'T'	AGATTTCCC	INS	AGATTTCCC	0.545	mutect2,strelka	intron_variant	MODIFIER	rau	intron	rau	FBgn0031745
A373R7	2L	5915591	AG	'A'	GGGGAGCTC	INS	GGGGAGCTC	0.375	mutect2,strelka	frameshift_variant	HIGH	bchs	exon_10	bchs	FBgn0043362
A373R7	2L	6004538	AG	'A'	TTGGAGAGC	INS	TTGGAGAGC	0.25	mutect2	frameshift_variant	HIGH	Gal	exon_2	CR43866	FBgn0264448
A373R7	2L	6182974	TG	'T'	GAATTGGCC	INS	GAATTGGCC	0.429	mutect2,strelka	intron_variant	MODIFIER	CG34380	intron	CG34380	FBgn0085409
A373R7	2L	6462447	G	'GTT'	GTTAGTTTT	INS	AAAACTAAC	0.222	mutect2	downstream_gene_variant	MODIFIER	frj	intron	CG16947	FBgn0031816
A373R7	2L	6562699	G	'GGC'	ATATGGCGG	INS	CCGCCATAT	0.444	mutect2,strelka	frameshift_variant	HIGH	Ent2	start_codon	Ent2	FBgn0263916
A373R7	2L	6580581	GA	'G'	GCCGGAATG	INS	GCCGGAATG	0.385	mutect2,strelka	intron_variant	MODIFIER	CG11319	intron	CG11319	FBgn0031835
A373R7	2L	6688502	CA	'C'	TGGACAACC	INS	TGGACAACC	0.286	mutect2	frameshift_variant	HIGH	Tsp	exon_11	Tsp	FBgn0031850
A373R7	2L	7142133	ATG	'A'	CTCCATGTG	INS	CTCCATGTG	0.5	strelka	upstream_gene_variant	MODIFIER	CR44612	intron	Pvf3	FBgn0085407
A373R7	2L	7370395	AGTT	'A'	GGTGAGTTG	INS	GGTGAGTTG	0.2	mutect2	splice_region_variant&intron_variant	LOW	Wnt10	exon_1	CR44063	FBgn0264872
A373R7	2L	7934460	TG	'T'	GGGATGGGT	INS	GGGATGGGT	0.8	mutect2,strelka	intron_variant	MODIFIER	Snoo	intron	Snoo	FBgn0085450
A373R7	2L	8137522	TC	'T'	CGATTCCCT	INS	CGATTCCCT	0.429	mutect2	frameshift_variant	HIGH	CG8552	5UTR	PAPLA1	FBgn0031990
A373R7	2L	8244708	CA	'C'	ATGGCAGGA	INS	ATGGCAGGA	0.286	mutect2	frameshift_variant	HIGH	CG8086	exon	CG8086	FBgn0032010
A373R7	2L	8292387	GA	'G'	AGGGGAAAT	INS	AGGGGAAAT	0.5	mutect2	upstream_gene_variant	MODIFIER	CR43752	intron	Btk29A	FBgn0003502
A373R7	2L	8329396	TA	'T'	AATTTAAAA	INS	AATTTAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG7781	intron	CG14275	FBgn0032022
A373R7	2L	9737361	GTT	'G'	AGGGGTTAA	INS	AGGGGTTAA	0.167	strelka	3_prime_UTR_variant	MODIFIER	CG13117	3UTR	CG13117	FBgn0032140
A373R7	2L	9814389	CA	'C'	TGAACAATC	INS	TGAACAATC	0.5	mutect2,strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
A373R7	2L	9961894	CA	'C'	GTGACATCC	INS	GTGACATCC	0.333	mutect2,strelka	frameshift_variant	HIGH	CG5850	ncRNA	CR43683	FBgn0263766
A373R7	2L	9965949	TA	'T'	ATGCTAAGG	INS	ATGCTAAGG	0.231	mutect2,strelka	frameshift_variant	HIGH	Dref	exon_1	Dref	FBgn0015664
A373R7	2L	10073823	GA	'G'	ACCAGAAAA	INS	ACCAGAAAA	0.25	mutect2,strelka	intron_variant	MODIFIER	CG44153	intron	CG44153	FBgn0265002
A373R7	2L	10114074	GA	'G'	TATGGAAAA	INS	TATGGAAAA	0.308	mutect2,strelka	intron_variant	MODIFIER	CG44153	intron	CG34109	FBgn0083945
A373R7	2L	10166491	GCA	'G'	AACGGCACA	INS	AACGGCACA	0.5	strelka	intron_variant	MODIFIER	CG44153	intron	CG44153	FBgn0265002
A373R7	2L	10513027	GT	'G'	TCTTGTTAG	INS	TCTTGTTAG	0.364	strelka	frameshift_variant	HIGH	Fatp	exon_2	Fatp	FBgn0267828
A373R7	2L	10541849	G	'GGAAA'	GCTTGATTT	INS	AAATCAAGC	1	strelka	upstream_gene_variant	MODIFIER	Trim9	intergenic	intergenic	intergenic
A373R7	2L	11630227	CA	'C'	AACTCAGCT	INS	AACTCAGCT	0.25	mutect2	downstream_gene_variant	MODIFIER	kek2	intergenic	intergenic	intergenic
A373R7	2L	12377939	TA	'T'	AAATTACCT	INS	AAATTACCT	0.25	mutect2	intron_variant	MODIFIER	bru-2	intron	bru2	FBgn0262475
A373R7	2L	13051415	CCAT	'C'	AAGCCCATA	INS	AAGCCCATA	0.25	mutect2,strelka	intron_variant	MODIFIER	CG9932	intron	CG9932	FBgn0262160
A373R7	2L	13094714	A	'AGCTCGATTATAATTTTATTCCT'	GAAGAAAAT	INS	ATTTTCTTC	0.75	strelka	upstream_gene_variant	MODIFIER	CR45447	intergenic	intergenic	intergenic
A373R7	2L	13171545	TC	'T'	GCCTTCCTC	INS	GCCTTCCTC	0.333	strelka	frameshift_variant	HIGH	Sfmbt	exon_6	Sfmbt	FBgn0032475
A373R7	2L	13508678	CGTT	'C'	TTGGCGTTG	INS	TTGGCGTTG	0.222	mutect2	conservative_inframe_deletion	MODERATE	B4	exon_6	B4	FBgn0023407
A373R7	2L	13799733	TAA	'T'	ATATTAAGA	INS	ATATTAAGA	0.167	mutect2	upstream_gene_variant	MODIFIER	CAH1	intergenic	intergenic	intergenic
A373R7	2L	14364320	GT	'G'	ACACGTTTT	INS	ACACGTTTT	0.5	strelka	upstream_gene_variant	MODIFIER	CR43463	intron	spel1	FBgn0015546
A373R7	2L	15034355	A	'AT'	AATTATTTG	INS	CAAATAATT	0.158	mutect2,strelka	3_prime_UTR_variant	MODIFIER	GABA-B-R1	3UTR	GABA-B-R1	FBgn0260446
A373R7	2L	15039239	A	'AT'	TTCAATGAA	INS	TTCATTGAA	0.25	strelka	upstream_gene_variant	MODIFIER	CIAPIN1	intergenic	intergenic	intergenic
A373R7	2L	15047464	G	'GCA'	AGGCGCACG	INS	CGTGCGCCT	0.143	mutect2	frameshift_variant	HIGH	ck	exon_8	ck	FBgn0000317
A373R7	2L	15259057	C	'CG'	TCGACGAAA	INS	TCGACGAAA	0.4	strelka	frameshift_variant	HIGH	yuri	exon_2	yuri	FBgn0045842
A373R7	2L	15341152	A	'ATC'	CCATATCTC	INS	GAGATATGG	0.333	mutect2,strelka	intergenic_region	MODIFIER	esg-CG15258	intergenic	intergenic	intergenic
A373R7	2L	15420963	GT	'G'	GTGTGTGTG	INS	GTGTGTGTG	0	consensus	upstream_gene_variant	MODIFIER	CG44869	intergenic	intergenic	intergenic
A373R7	2L	15420968	GTGT	'G'	TGTGGTGTC	INS	TGTGGTGTC	0	consensus	upstream_gene_variant	MODIFIER	CG44869	intergenic	intergenic	intergenic
A373R7	2L	15757170	TG	'T'	AGGGTGGCT	INS	AGGGTGGCT	0.4	mutect2	frameshift_variant	HIGH	Gli	exon	Gli	FBgn0001987
A373R7	2L	15796155	AAT	'A'	ATCAAATAT	INS	ATCAAATAT	0.5	mutect2,strelka	intergenic_region	MODIFIER	CG18109-CR44602	intergenic	intergenic	intergenic
A373R7	2L	16133620	TA	'T'	AAACTAAAA	INS	AAACTAAAA	0.571	strelka	5_prime_UTR_variant	MODIFIER	CG4892	5UTR	CG4892	FBgn0028884
A373R7	2L	17024289	CTCT	'C'	ACAGCTCTT	INS	ACAGCTCTT	0.125	mutect2	intergenic_region	MODIFIER	CR45462-CR43802	intergenic	intergenic	intergenic
A373R7	2L	17402643	CT	'C'	AGTACTAGA	INS	AGTACTAGA	0.571	mutect2,strelka	downstream_gene_variant	MODIFIER	CLIP-190	intron	CLIP-190	FBgn0020503
A373R7	2L	18040078	A	'AT'	GTACATTAG	INS	CTAATGTAC	0.188	strelka	intron_variant	MODIFIER	rdo	intron	rdo	FBgn0243486
A373R7	2L	18154369	CCAGCAGCAGGAGGCCAGATATCTTGGCCCTGCGA	'C'	TAAGCCAGC	INS	TAAGCCAGC	0.6	strelka	frameshift_variant	HIGH	CG17681	exon	CG17681	FBgn0032668
A373R7	2L	18777609	GGT	'G'	TAAGGGTGT	INS	TAAGGGTGT	0.25	strelka	upstream_gene_variant	MODIFIER	CR43804	intron	ham	FBgn0045852
A373R7	2L	18840358	C	'CCT'	CCTCCCTCT	INS	CCTCCCTCT	0.2	mutect2,strelka	frameshift_variant	HIGH	CG31752	exon	CG31752	FBgn0051752
A373R7	2L	18880548	C	'CT'	GTCCCTAGG	INS	GTCCCTAGG	0.667	strelka	intron_variant	MODIFIER	tup	intron	tup	FBgn0003896
A373R7	2L	18906164	CAG	'C'	CGAGCAGAG	INS	CGAGCAGAG	0.25	mutect2,strelka	non_coding_transcript_exon_variant	MODIFIER	CR44738	exon_1	CR44738	FBgn0265951
A373R7	2L	19127435	AT	'A'	GCTGATATC	INS	GCTGATATC	0.235	strelka	upstream_gene_variant	MODIFIER	l(2)37Cc	intron	l(2)37Cd	FBgn0086445
A373R7	2L	19197261	G	'GGGGT'	GGAGGGGTG	INS	CACCCCTCC	0.5	strelka	intron_variant	MODIFIER	drl	intron	drl	FBgn0015380
A373R7	2L	19415044	GT	'G'	AAAGGTTCT	INS	AAAGGTTCT	0.333	mutect2	upstream_gene_variant	MODIFIER	Lectin-galC1	intron	Pax	FBgn0041789
A373R7	2L	19465302	TC	'T'	CAGCTCCGT	INS	CAGCTCCGT	0.667	mutect2	frameshift_variant	HIGH	tj	exon	tj	FBgn0000964
A373R7	2L	20601412	TA	'T'	AGGGTAAAT	INS	AGGGTAAAT	0.4	mutect2	downstream_gene_variant	MODIFIER	CG31677	ncRNA	CR44909	FBgn0266214
A373R7	2L	20835000	TG	'T'	ACCCTGGCA	INS	ACCCTGGCA	0.385	mutect2,strelka	frameshift_variant	HIGH	Oseg5	exon_2	Oseg5	FBgn0032891
A373R7	2L	21145021	TG	'T'	GCGGTGGTG	INS	GCGGTGGTG	0.375	strelka	frameshift_variant	HIGH	CG9253	exon	CG9253	FBgn0032919
A373R7	2L	22699139	A	'AC'	CAGCACCTG	INS	CAGGTGCTG	0.4	mutect2	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
A373R7	2R	603795	GCCACTGACT	'G'	GCTGGCCAC	INS	GCTGGCCAC	0.857	strelka	intron_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
A373R7	2R	1044227	GTCT	'G'	AGATGTCTC	INS	AGATGTCTC	0.375	strelka	intergenic_region	MODIFIER	CG40498-CR41257	intergenic	intergenic	intergenic
A373R7	2R	1359499	CACTGAA	'C'	GACACACTG	INS	GACACACTG	0.333	strelka	intron_variant	MODIFIER	l(2)41Ab	intron	l(2)41Ab	FBgn0262123
A373R7	2R	3128197	T	'TC'	ACGGTCCCC	INS	ACGGTCCCC	0.6	strelka	intron_variant	MODIFIER	CG42596	intron	dpr21	FBgn0260995
A373R7	2R	4655249	TA	'T'	CAAATAAAA	INS	CAAATAAAA	0.13	strelka	intergenic_region	MODIFIER	CR45923-CG17883	intergenic	intergenic	intergenic
A373R7	2R	5657778	TG	'T'	GAAGTGGTG	INS	GAAGTGGTG	0.286	mutect2	frameshift_variant	HIGH	Not3	exon_8	Not3	FBgn0033029
A373R7	2R	6078206	TA	'T'	TTTATAAAA	INS	TTTATAAAA	0.5	strelka	upstream_gene_variant	MODIFIER	CG7845	intergenic	intergenic	intergenic
A373R7	2R	7100230	CAT	'C'	CGAACATAT	INS	CGAACATAT	0.3	mutect2,strelka	intron_variant	MODIFIER	esn	intron	esn	FBgn0263934
A373R7	2R	7598394	GT	'G'	GATAGTACG	INS	GATAGTACG	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	scra	intron	CG1358	FBgn0033196
A373R7	2R	8306335	A	'AT'	CCTGATTGA	INS	TCAATCAGG	0.75	mutect2,strelka	upstream_gene_variant	MODIFIER	CR44448	intergenic	intergenic	intergenic
A373R7	2R	8876001	CA	'C'	GCGGCAGTA	INS	GCGGCAGTA	0.273	mutect2	frameshift_variant	HIGH	RyR	exon_16	RyR	FBgn0011286
A373R7	2R	9425692	ATT	'A'	GAAGATTTT	INS	GAAGATTTT	0.182	mutect2	3_prime_UTR_variant	MODIFIER	prel	3UTR	prel	FBgn0033413
A373R7	2R	10494019	A	'AC'	AAAAAACAA	INS	TTGTTTTTT	0.375	strelka	downstream_gene_variant	MODIFIER	lola	intron	lola	FBgn0283521
A373R7	2R	10565871	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.429	mutect2,strelka	upstream_gene_variant	MODIFIER	psq	intron	psq	FBgn0263102
A373R7	2R	11077521	CT	'C'	TCCACTGTA	INS	TCCACTGTA	0.2	mutect2	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
A373R7	2R	11979472	GA	'G'	AATGGACAG	INS	AATGGACAG	0.3	mutect2,strelka	frameshift_variant	HIGH	CG30037	exon	CG30037	FBgn0050037
A373R7	2R	11997500	ACT	'A'	TTCCACTCT	INS	TTCCACTCT	0.333	strelka	upstream_gene_variant	MODIFIER	CR45319	intergenic	intergenic	intergenic
A373R7	2R	12526282	G	'GTTT'	TGTTGTTTT	INS	AAAACAACA	1	strelka	upstream_gene_variant	MODIFIER	fra	intergenic	intergenic	intergenic
A373R7	2R	13558268	T	'TA'	TGCTTTTTA	INS	TGCTTTTTA	0.667	mutect2	upstream_gene_variant	MODIFIER	snoRNA:Psi28S-1153	intergenic	intergenic	intergenic
A373R7	2R	13929518	AGCACTTT	'A'	ACTAAGCAC	INS	ACTAAGCAC	0.667	strelka	upstream_gene_variant	MODIFIER	shot	intron	shot	FBgn0013733
A373R7	2R	13929527	AGTATTTTTATTTT	'A'	TTTCAGTAT	INS	TTTCAGTAT	0.667	strelka	upstream_gene_variant	MODIFIER	shot	intron	shot	FBgn0013733
A373R7	2R	13937411	GAACCCAC	'G'	ATGGGAACC	INS	ATGGGAACC	0.429	strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
A373R7	2R	14150592	A	'ATC'	CATCATCTG	INS	CAGATGATG	0.273	mutect2,strelka	frameshift_variant	HIGH	Rcd1	exon_4	Rcd1	FBgn0033897
A373R7	2R	14407658	C	'CA'	CAGCCAAAA	INS	CAGCCAAAA	0.333	strelka	upstream_gene_variant	MODIFIER	CR44369	intergenic	intergenic	intergenic
A373R7	2R	14420778	TC	'T'	CACATCTTG	INS	CACATCTTG	0.5	mutect2	5_prime_UTR_variant	MODIFIER	CG17386	5UTR	CG17386	FBgn0033936
A373R7	2R	14535964	AT	'A'	GAGTATCTG	INS	GAGTATCTG	0.273	mutect2,strelka	intron_variant	MODIFIER	ttv	intron	ttv	FBgn0265974
A373R7	2R	15466808	T	'TCC'	TTCCTCCCC	INS	TTCCTCCCC	0.429	mutect2,strelka	downstream_gene_variant	MODIFIER	CG43729	intron	CG43729	FBgn0263980
A373R7	2R	15824150	AT	'A'	GACAATGTA	INS	GACAATGTA	0.231	strelka	upstream_gene_variant	MODIFIER	CG33465	intron	tun	FBgn0034046
A373R7	2R	15947421	GA	'G'	CGCTGAGCA	INS	CGCTGAGCA	0.375	mutect2,strelka	frameshift_variant	HIGH	Strn-Mlck	exon	Strn-Mlck	FBgn0265045
A373R7	2R	16066027	T	'TTGG'	CAATTTGGT	INS	CAATTTGGT	0.182	mutect2	upstream_gene_variant	MODIFIER	mir-137	intergenic	intergenic	intergenic
A373R7	2R	16564148	CT	'C'	TGGGCTTCA	INS	TGGGCTTCA	0.231	strelka	upstream_gene_variant	MODIFIER	CG4945	intron	DAT	FBgn0034136
A373R7	2R	16677870	A	'AT'	GAGTATTTT	INS	AAAATACTC	0.364	strelka	downstream_gene_variant	MODIFIER	CG34458	intron	CG30463	FBgn0050463
A373R7	2R	16722095	A	'AT'	TGACATTTT	INS	AAAATGTCA	0.188	strelka	intron_variant	MODIFIER	CG30463	intron	CG30463	FBgn0050463
A373R7	2R	16841323	C	'CA'	AACCCAAAA	INS	AACCCAAAA	0.308	strelka	upstream_gene_variant	MODIFIER	CR44466	intergenic	intergenic	intergenic
A373R7	2R	16846714	AT	'A'	TAGAATTTT	INS	TAGAATTTT	0.5	strelka	upstream_gene_variant	MODIFIER	Ugt37c1	intergenic	intergenic	intergenic
A373R7	2R	16924648	G	'GT'	GCCAGTTGG	INS	CCAACTGGC	0.667	mutect2,strelka	upstream_gene_variant	MODIFIER	Pkc53E	intergenic	intergenic	intergenic
A373R7	2R	16983872	GGCGGCCCAGCAATTTTGTTTAC	'G'	TGTGGGCGG	INS	TGTGGGCGG	0.6	strelka	intron_variant	MODIFIER	Cbp53E	intron	Cbp53E	FBgn0004580
A373R7	2R	17052909	G	'GC'	TGCAGCCGG	INS	CCGGCTGCA	0.188	strelka	frameshift_variant	HIGH	CG9646	exon_5	CG9646	FBgn0034184
A373R7	2R	17532753	G	'GA'	TTTAGAATC	INS	GATTCTAAA	0.214	strelka	upstream_gene_variant	MODIFIER	eIF3-S9	intron	Patronin	FBgn0263197
A373R7	2R	17679622	ACT	'A'	CTCAACTCT	INS	CTCAACTCT	0.667	mutect2	upstream_gene_variant	MODIFIER	Sema-1b	intron	Sema-1b	FBgn0016059
A373R7	2R	18548770	CA	'C'	AATCCACAA	INS	AATCCACAA	0.25	mutect2	3_prime_UTR_variant	MODIFIER	Rgk2	3UTR	Rgk2	FBgn0085419
A373R7	2R	19030363	T	'TC'	TGTGTCCCC	INS	TGTGTCCCC	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	CG43351	intron	5-HT1B	FBgn0263116
A373R7	2R	19196812	GT	'G'	TGTCGTTTT	INS	TGTCGTTTT	0.375	strelka	intron_variant	MODIFIER	hppy	intron	hppy	FBgn0263395
A373R7	2R	19462720	G	'GCA'	ACAAGCACA	INS	TGTGCTTGT	0.4	mutect2	5_prime_UTR_variant	MODIFIER	par-1	exon_1	par-1	FBgn0260934
A373R7	2R	20476423	A	'AG'	ACGAAGGGG	INS	CCCCTTCGT	0.667	mutect2	intron_variant	MODIFIER	CG12484	intron	CG12484	FBgn0086604
A373R7	2R	20550675	GC	'G'	GGCAGCTAT	INS	GGCAGCTAT	0.429	mutect2,strelka	frameshift_variant	HIGH	CG13430	3UTR	CG18065	FBgn0034519
A373R7	2R	20820036	GCA	'G'	ACAAGCACA	INS	ACAAGCACA	0.167	strelka	downstream_gene_variant	MODIFIER	insc	intergenic	intergenic	intergenic
A373R7	2R	20980007	AGT	'A'	TGTGAGTGT	INS	TGTGAGTGT	0.267	mutect2,strelka	upstream_gene_variant	MODIFIER	CG15650	intron	CG9313	FBgn0034566
A373R7	2R	21453325	CAA	'C'	GAAACAAAA	INS	GAAACAAAA	0.286	mutect2	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
A373R7	2R	21968760	AT	'A'	CAGGATGTT	INS	CAGGATGTT	0.333	mutect2	frameshift_variant	HIGH	ppk9	exon_5	ppk9	FBgn0085398
A373R7	2R	22094135	CT	'C'	TGTGCTTGG	INS	TGTGCTTGG	0.25	mutect2,strelka	frameshift_variant	HIGH	CG11073	exon_2	CG11073	FBgn0034693
A373R7	2R	22531238	TAC	'T'	ACTGTACAC	INS	ACTGTACAC	0.182	mutect2	intron_variant	MODIFIER	px	intron	px	FBgn0003175
A373R7	2R	22699074	GTC	'G'	AATCGTCGC	INS	AATCGTCGC	0.25	mutect2	frameshift_variant	HIGH	robo	exon_5	robo1	FBgn0005631
A373R7	2R	22913357	T	'TGA'	GCATTGAGA	INS	GCATTGAGA	0.167	mutect2	frameshift_variant	HIGH	nahoda	exon_7	nahoda	FBgn0034797
A373R7	2R	23012645	CG	'C'	AAGGCGGGA	INS	AAGGCGGGA	0.4	mutect2	frameshift_variant	HIGH	CG42741	exon_4	CG42741	FBgn0261705
A373R7	2R	23068055	TC	'T'	TACATCCAG	INS	TACATCCAG	0.364	strelka	frameshift_variant	HIGH	l(2)k09913	exon_3	l(2)k09913	FBgn0021979
A373R7	2R	23193034	AAC	'A'	GACGAACAC	INS	GACGAACAC	0.3	strelka	intron_variant	MODIFIER	CG34371	intron	CG34371	FBgn0085400
A373R7	2R	23510185	T	'TG'	GGAGTGGTT	INS	GGAGTGGTT	0.3	strelka	upstream_gene_variant	MODIFIER	CR43794	intergenic	intergenic	intergenic
A373R7	2R	24837107	CA	'C'	TCCTCATCC	INS	TCCTCATCC	0.4	mutect2	downstream_gene_variant	MODIFIER	Dll	intergenic	intergenic	intergenic
A373R7	2R	24955317	TA	'T'	GTTCTAAAA	INS	GTTCTAAAA	0.357	mutect2	3_prime_UTR_variant	MODIFIER	CG12851	3UTR	CG12851	FBgn0035086
A373R7	3L	199350	CA	'C'	TATACACGG	INS	TATACACGG	0.3	mutect2,strelka	upstream_gene_variant	MODIFIER	mri	intron	rno	FBgn0035106
A373R7	3L	233563	TGA	'T'	AAACTGAGA	INS	AAACTGAGA	0.167	mutect2,strelka	upstream_gene_variant	MODIFIER	CG42846	intergenic	intergenic	intergenic
A373R7	3L	650474	CT	'C'	AAGACTAAA	INS	AAGACTAAA	0.273	strelka	frameshift_variant	HIGH	Gale	exon_3	Gale	FBgn0035147
A373R7	3L	904809	AAT	'A'	ATGAAATAT	INS	ATGAAATAT	0.333	mutect2	upstream_gene_variant	MODIFIER	nerfin-1	intergenic	intergenic	intergenic
A373R7	3L	1228505	AT	'A'	TTCAATTTC	INS	TTCAATTTC	0.273	strelka	upstream_gene_variant	MODIFIER	CG33965	intron	mwh	FBgn0264272
A373R7	3L	1387162	G	'GCT'	ATTCGCTCA	INS	TGAGCGAAT	0.222	mutect2,strelka	3_prime_UTR_variant	MODIFIER	ru	3UTR	ru	FBgn0003295
A373R7	3L	1394506	G	'GGT'	TTTTGGTGG	INS	CCACCAAAA	0.25	mutect2	upstream_gene_variant	MODIFIER	tRNA:E4:62Aa	intron	Ptp61F	FBgn0267487
A373R7	3L	1582797	T	'TC'	CGTTTCCCC	INS	CGTTTCCCC	0.333	strelka	upstream_gene_variant	MODIFIER	CG13917	intron	CG13917	FBgn0035237
A373R7	3L	1942961	CA	'C'	CACACAAAA	INS	CACACAAAA	0.6	strelka	3_prime_UTR_variant	MODIFIER	mu2	3UTR	mu2	FBgn0002872
A373R7	3L	2135060	ACTCGTTTT	'A'	CGTGACTCG	INS	CGTGACTCG	0.2	mutect2	frameshift_variant	HIGH	zormin	exon_11	zormin	FBgn0052311
A373R7	3L	2220810	GTTTT	'G'	GATAGTTTT	INS	GATAGTTTT	0.333	mutect2,strelka	intergenic_region	MODIFIER	CG15878-Oseg2	intergenic	intergenic	intergenic
A373R7	3L	3085332	CGCA	'C'	CCGCCGCAG	INS	CCGCCGCAG	0.3	strelka	disruptive_inframe_deletion	MODERATE	CG11486	exon_6	CG11486	FBgn0035397
A373R7	3L	3127757	TAA	'T'	TATATAAAT	INS	TATATAAAT	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	prominin-like	intergenic	intergenic	intergenic
A373R7	3L	3831675	TA	'T'	TTACTAATT	INS	TTACTAATT	0.6	mutect2,strelka	downstream_gene_variant	MODIFIER	Rdh	intron	enc	FBgn0004875
A373R7	3L	4710138	GGTT	'G'	GCTCGGTTG	INS	GCTCGGTTG	0.188	mutect2,strelka	upstream_gene_variant	MODIFIER	CG13712	intron	RhoGEF64C	FBgn0035574
A373R7	3L	4878829	G	'GGT'	CAGCGGTGT	INS	ACACCGCTG	0.333	strelka	intron_variant	MODIFIER	CG17150	intron	Dnah3	FBgn0035581
A373R7	3L	5077206	T	'TC'	CCGATCCCC	INS	CCGATCCCC	0.444	strelka	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
A373R7	3L	5193729	GT	'G'	CTGGGTTTT	INS	CTGGGTTTT	0.667	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
A373R7	3L	5223467	CAATGGGCGGAATATATAGACAAGGATACG	'C'	GTGGCAATG	INS	GTGGCAATG	0.5	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
A373R7	3L	5335098	AC	'A'	ATACACAGG	INS	ATACACAGG	0.429	mutect2,strelka	non_coding_transcript_exon_variant	MODIFIER	CR45742	ncRNA	CR45742	FBgn0267306
A373R7	3L	5353522	C	'CA'	CGTGCAAAA	INS	CGTGCAAAA	0.308	strelka	upstream_gene_variant	MODIFIER	tRNA:CR32420	intron	lama	FBgn0016031
A373R7	3L	5455343	CCACTG	'C'	CTTGCCACT	INS	CTTGCCACT	0.727	strelka	intergenic_region	MODIFIER	CG34391-CG4835	intergenic	intergenic	intergenic
A373R7	3L	5797538	AT	'A'	TTTAATTTT	INS	TTTAATTTT	0.75	strelka	upstream_gene_variant	MODIFIER	Bre1	intergenic	intergenic	intergenic
A373R7	3L	5917917	AC	'A'	TTGGACCAT	INS	TTGGACCAT	0.333	mutect2	3_prime_UTR_variant	MODIFIER	CG10483	3UTR	CG10483	FBgn0035649
A373R7	3L	5938447	A	'ATATATGCGTGTTTGAG'	ATATATGCC	INS	GGCATATAT	0.75	strelka	upstream_gene_variant	MODIFIER	CG33993	intron	CG33993	FBgn0053993
A373R7	3L	6684100	AT	'A'	ATGGATTTT	INS	ATGGATTTT	0.4	mutect2,strelka	intergenic_region	MODIFIER	CG32395-SP1173	intergenic	intergenic	intergenic
A373R7	3L	6761246	TAA	'T'	CGACTAAAG	INS	CGACTAAAG	0	consensus	upstream_gene_variant	MODIFIER	CG10103	intron	CG32392	FBgn0052392
A373R7	3L	7302319	G	'GGGT'	GAGGGGCGG	INS	CCGCCCCTC	0.5	strelka	intron_variant	MODIFIER	unc-13-4A	intron	unc-13-4A	FBgn0035756
A373R7	3L	7480653	AGT	'A'	TTTAAGTGC	INS	TTTAAGTGC	0.333	mutect2	downstream_gene_variant	MODIFIER	CG43292	intergenic	intergenic	intergenic
A373R7	3L	7583119	CA	'C'	CCCCCAAAA	INS	CCCCCAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CG14838	intergenic	intergenic	intergenic
A373R7	3L	7899421	A	'AGT'	CCAGAGTGT	INS	ACACTCTGG	0.333	strelka	5_prime_UTR_variant	MODIFIER	pbl	exon_1	pbl	FBgn0003041
A373R7	3L	7959127	AT	'A'	TTCGATTTG	INS	TTCGATTTG	1	strelka	intergenic_region	MODIFIER	exex-RNaseX25	intergenic	intergenic	intergenic
A373R7	3L	8144686	G	'GGT'	TAGTGGTGG	INS	CCACCACTA	0.308	mutect2,strelka	frameshift_variant	HIGH	CG13676	exon_8	CG13676	FBgn0035844
A373R7	3L	8609137	AT	'A'	AAGTATGTG	INS	AAGTATGTG	0.182	mutect2	upstream_gene_variant	MODIFIER	CG5989	intron	CG6282	FBgn0035914
A373R7	3L	8648159	AGT	'A'	TTGGAGTTG	INS	TTGGAGTTG	0.429	mutect2	frameshift_variant	HIGH	Arr2	exon_1	Arr2	FBgn0000121
A373R7	3L	9441897	TG	'T'	TGCCTGATT	INS	TGCCTGATT	0.167	strelka	5_prime_UTR_variant	MODIFIER	Nf-YA	5UTR	Nf-YA	FBgn0035993
A373R7	3L	9457449	C	'CGT'	GGAGCGTGT	INS	GGAGCGTGT	0.429	mutect2,strelka	frameshift_variant	HIGH	CG3437	exon_2	CG3437	FBgn0035998
A373R7	3L	9834564	G	'GGGAGACTTGGACTAAAACTCAAT'	GAACGGGTT	INS	AACCCGTTC	0.333	strelka	3_prime_UTR_variant	MODIFIER	I-2	3UTR	I-2	FBgn0028429
A373R7	3L	10154168	GT	'G'	ATATGTTTT	INS	ATATGTTTT	0.333	strelka	upstream_gene_variant	MODIFIER	snoRNA:MeU2-A31	intron	dpr10	FBgn0052057
A373R7	3L	10475829	AC	'A'	ATGAACCCA	INS	ATGAACCCA	0	consensus	intergenic_region	MODIFIER	S-Lap3-A2bp1	intergenic	intergenic	intergenic
A373R7	3L	10676018	CAT	'C'	AACCCATAT	INS	AACCCATAT	0.273	strelka	intron_variant	MODIFIER	simj	intron	simj	FBgn0010762
A373R7	3L	11290398	G	'GT'	TAAAGTTTC	INS	GAAACTTTA	0.4	strelka	intron_variant	MODIFIER	CG6175	intron	CG6175	FBgn0036152
A373R7	3L	11375425	AAT	'A'	ACGAAATAT	INS	ACGAAATAT	0.231	mutect2,strelka	intergenic_region	MODIFIER	CR45036-CR42755	intergenic	intergenic	intergenic
A373R7	3L	11489796	C	'CA'	TAAGCCAAA	INS	TAAGCCAAA	0.4	strelka	upstream_gene_variant	MODIFIER	chrb	intron	chrb	FBgn0036165
A373R7	3L	11764929	AGT	'A'	TGCGAGTGT	INS	TGCGAGTGT	0.5	strelka	downstream_gene_variant	MODIFIER	Muc68D	intron	CG6024	FBgn0036202
A373R7	3L	12053989	T	'TG'	GTTTTGGCA	INS	GTTTTGGCA	0.19	strelka	intron_variant	MODIFIER	rols	intron	rols	FBgn0041096
A373R7	3L	12275353	CCA	'C'	CACCCCACT	INS	CACCCCACT	0.118	mutect2	upstream_gene_variant	MODIFIER	Pbgs	intron	CG4300	FBgn0036272
A373R7	3L	12456670	GGAGT	'G'	GAGGGGAGT	INS	GAGGGGAGT	0.167	mutect2	intergenic_region	MODIFIER	toe-eyg	intergenic	intergenic	intergenic
A373R7	3L	12933427	CA	'C'	TATGCAGAC	INS	TATGCAGAC	0.167	mutect2	intergenic_region	MODIFIER	CG32115-CG10752	intergenic	intergenic	intergenic
A373R7	3L	12970595	CTGAAACGTGGCCAGG	'C'	CAATCTGAA	INS	CAATCTGAA	0.5	mutect2,strelka	upstream_gene_variant	MODIFIER	Or69a	intergenic	intergenic	intergenic
A373R7	3L	13238015	T	'TC'	TTTATCGAC	INS	TTTATCGAC	0.375	strelka	intron_variant	MODIFIER	caps	intron	caps	FBgn0023095
A373R7	3L	13389183	C	'CG'	TGACCGGCG	INS	TGACCGGCG	0.231	strelka	frameshift_variant	HIGH	Poc1	exon_1	Poc1	FBgn0036354
A373R7	3L	13644590	G	'GT'	ATGTGTATT	INS	AATACACAT	0.25	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A373R7	3L	14889543	C	'CA'	CCATCATTT	INS	CCATCATTT	0.444	mutect2,strelka	downstream_gene_variant	MODIFIER	CR44702	intergenic	intergenic	intergenic
A373R7	3L	15411733	TGA	'T'	TGTGTGAGA	INS	TGTGTGAGA	0.222	mutect2	downstream_gene_variant	MODIFIER	CG33259	intergenic	intergenic	intergenic
A373R7	3L	15696443	CT	'C'	GGTTCTTCC	INS	GGTTCTTCC	0.231	strelka	upstream_gene_variant	MODIFIER	CG34451	intergenic	intergenic	intergenic
A373R7	3L	15799240	CGA	'C'	TTCTCGAGC	INS	TTCTCGAGC	0.6	mutect2,strelka	intergenic_region	MODIFIER	CR45240-CG6244	intergenic	intergenic	intergenic
A373R7	3L	16790427	GAGC	'G'	TGACGAGCA	INS	TGACGAGCA	0.214	mutect2,strelka	disruptive_inframe_deletion	MODERATE	CG9674	exon_13	CG9674	FBgn0036663
A373R7	3L	17076725	AT	'A'	TGAAATTTT	INS	TGAAATTTT	0.364	strelka	3_prime_UTR_variant	MODIFIER	Rbp6	3UTR	Rbp6	FBgn0260943
A373R7	3L	17264886	A	'AT'	CTAAATGGG	INS	CCCATTTAG	0.364	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG13723	3UTR	CG13723	FBgn0036705
A373R7	3L	17791891	GA	'G'	AGCGGAAAA	INS	AGCGGAAAA	0.667	mutect2	upstream_gene_variant	MODIFIER	CG42815	intergenic	intergenic	intergenic
A373R7	3L	18085967	ACT	'A'	GATGACTCT	INS	GATGACTCT	0.5	strelka	upstream_gene_variant	MODIFIER	CR43253	exon_2	CR32194	FBgn0052194
A373R7	3L	18229416	C	'CCCCCT'	CCCTCCCGA	INS	CCCTCCCGA	0.25	strelka	upstream_gene_variant	MODIFIER	CR45935	intergenic	intergenic	intergenic
A373R7	3L	18644146	AT	'A'	ATTGATTAC	INS	ATTGATTAC	0.2	mutect2	intron_variant	MODIFIER	MYPT-75D	intron	MYPT-75D	FBgn0036801
A373R7	3L	18698923	TA	'T'	TGCATAAGT	INS	TGCATAAGT	0.364	strelka	upstream_gene_variant	MODIFIER	CR43987	intergenic	intergenic	intergenic
A373R7	3L	18759229	GCA	'G'	ACTCGCACA	INS	ACTCGCACA	0.25	strelka	intron_variant	MODIFIER	ftz-f1	intron	ftz-f1	FBgn0001078
A373R7	3L	18818613	T	'TTATAAAAC'	TCAATGTTA	INS	TCAATGTTA	0.8	mutect2	upstream_gene_variant	MODIFIER	HipHop	intron	CG14073	FBgn0036814
A373R7	3L	19344726	TA	'T'	CAACTAACA	INS	CAACTAACA	0.375	mutect2,strelka	intron_variant	MODIFIER	CG32206	intron	CG32206	FBgn0052206
A373R7	3L	19467222	T	'TGAAAATG'	AAAGTGCAA	INS	AAAGTGCAA	0.6	strelka	upstream_gene_variant	MODIFIER	CG14095	intergenic	intergenic	intergenic
A373R7	3L	19795279	CA	'C'	CCAGCAACA	INS	CCAGCAACA	0.333	strelka	frameshift_variant	HIGH	HLH106	exon_3	SREBP	FBgn0261283
A373R7	3L	20087488	CT	'C'	ATTGCTTCC	INS	ATTGCTTCC	0.158	strelka	intron_variant	MODIFIER	sNPF-R	intron	sNPF-R	FBgn0036934
A373R7	3L	20103373	GA	'G'	GTGGGATGC	INS	GTGGGATGC	0.5	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG14186	5UTR	CG14186	FBgn0036935
A373R7	3L	21334872	AT	'A'	GAACATATA	INS	GAACATATA	0.375	mutect2,strelka	3_prime_UTR_variant	MODIFIER	Rab26	3UTR	Rab26	FBgn0086913
A373R7	3L	21616089	GT	'G'	CCACGTTGT	INS	CCACGTTGT	0.25	strelka	frameshift_variant	HIGH	S1P	exon_3	S1P	FBgn0037105
A373R7	3L	22228637	TG	'T'	TGGATGGGT	INS	TGGATGGGT	0.429	strelka	upstream_gene_variant	MODIFIER	CR45035	intron	olf413	FBgn0037153
A373R7	3L	22484092	AGT	'A'	TGCAAGTGG	INS	TGCAAGTGG	0.222	mutect2	intergenic_region	MODIFIER	CG11425-CR45430	intergenic	intergenic	intergenic
A373R7	3L	22537204	CA	'C'	TCCCCAAGC	INS	TCCCCAAGC	0.333	mutect2	intergenic_region	MODIFIER	mir-957-CG11404	intergenic	intergenic	intergenic
A373R7	3L	22549317	CA	'C'	AGGACATGT	INS	AGGACATGT	0.333	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG11404	3UTR	CG11404	FBgn0037169
A373R7	3L	23429947	CA	'C'	CAGGCAATG	INS	CAGGCAATG	0.5	mutect2,strelka	intergenic_region	MODIFIER	CG32230-AGO3	intergenic	intergenic	intergenic
A373R7	3L	24324111	A	'AT'	GCATATTTT	INS	AAAATATGC	0.273	strelka	upstream_gene_variant	MODIFIER	nvd	intergenic	intergenic	intergenic
A373R7	3L	24603995	CA	'C'	GTGGCAAAA	INS	GTGGCAAAA	0.25	strelka	intergenic_region	MODIFIER	CR41597-scro	intergenic	intergenic	intergenic
A373R7	3L	24840596	GA	'G'	TGTCGAAAA	INS	TGTCGAAAA	0.4	strelka	intergenic_region	MODIFIER	scro-CG40472	intergenic	intergenic	intergenic
A373R7	3L	25071058	T	'TG'	CCTGTGGGT	INS	CCTGTGGGT	0.3	strelka	intergenic_region	MODIFIER	CG40002-Set1	intergenic	intergenic	intergenic
A373R7	3L	27991619	C	'CCA'	TTTCCCACA	INS	TTTCCCACA	0.4	mutect2	intron_variant	MODIFIER	CG17514	intron	CG17514	FBgn0039959
A373R7	3R	1646763	TC	'T'	TTGATCCCC	INS	TTGATCCCC	0.375	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A373R7	3R	2517706	TAATCGGGACTGGTGG	'T'	AAACTAATC	INS	AAACTAATC	0.0714	strelka	intergenic_region	MODIFIER	CG45784-CG45783	intron	Myo81F	FBgn0267431
A373R7	3R	3150902	GT	'G'	GTCCGTCCG	INS	GTCCGTCCG	1	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A373R7	3R	3713892	AGAT	'A'	TCGCAGATG	INS	TCGCAGATG	0.231	mutect2,strelka	intergenic_region	MODIFIER	Alg-2-Tim17b	intergenic	intergenic	intergenic
A373R7	3R	3848654	GATT	'G'	ATTGGATTA	INS	ATTGGATTA	0.111	mutect2	intron_variant	MODIFIER	CG41099	intron	CG41099	FBgn0039955
A373R7	3R	3851479	TC	'T'	ACTATCCGG	INS	ACTATCCGG	0.286	strelka	intron_variant	MODIFIER	CG41099	intron	CG41099	FBgn0039955
A373R7	3R	4251729	G	'GT'	TACGGTTTT	INS	AAAACCGTA	0.429	strelka	upstream_gene_variant	MODIFIER	TwdlG	intergenic	intergenic	intergenic
A373R7	3R	4661232	TG	'T'	TAGTTGTGC	INS	TAGTTGTGC	0.5	mutect2	upstream_gene_variant	MODIFIER	CR44156	intron	CG43427	FBgn0263346
A373R7	3R	4801026	GA	'G'	AACAGACAA	INS	AACAGACAA	0.562	mutect2	intron_variant	MODIFIER	ctrip	intron	ctrip	FBgn0260794
A373R7	3R	4963518	CA	'C'	TAACCAAAA	INS	TAACCAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CG2016	intergenic	intergenic	intergenic
A373R7	3R	5350579	AT	'A'	CACTATTCA	INS	CACTATTCA	0.2	strelka	upstream_gene_variant	MODIFIER	CG1161	intergenic	intergenic	intergenic
A373R7	3R	5497030	T	'TC'	CTGCTCCCC	INS	CTGCTCCCC	0.231	strelka	intron_variant	MODIFIER	CG31547	intron	CG31547	FBgn0051547
A373R7	3R	5729865	AT	'A'	ATTAATAGG	INS	ATTAATAGG	0.333	mutect2	upstream_gene_variant	MODIFIER	CG1239	intergenic	intergenic	intergenic
A373R7	3R	5852887	TC	'T'	GTTTTCCAG	INS	GTTTTCCAG	0.3	strelka	frameshift_variant	HIGH	disp	exon_4	disp	FBgn0029088
A373R7	3R	5940808	CA	'C'	ACTGCAAAA	INS	ACTGCAAAA	0.5	mutect2,strelka	intron_variant	MODIFIER	CG34113	intron	CG34113	FBgn0083949
A373R7	3R	6237156	GA	'G'	CTGTGAACA	INS	CTGTGAACA	0.5	strelka	3_prime_UTR_variant	MODIFIER	Osi6	3UTR	Osi6	FBgn0027527
A373R7	3R	6258712	C	'CA'	GCTGCAAAT	INS	GCTGCAAAT	0.25	strelka	upstream_gene_variant	MODIFIER	Osi9	intergenic	intergenic	intergenic
A373R7	3R	6954386	GAT	'G'	TTCCGATTG	INS	TTCCGATTG	0.5	mutect2	intron_variant	MODIFIER	Antp	intron	Antp	FBgn0260642
A373R7	3R	7039385	C	'CGT'	AGCTCGTGA	INS	AGCTCGTGA	0.333	mutect2	non_coding_transcript_exon_variant	MODIFIER	CR44933	exon_2	CR44933	FBgn0266238
A373R7	3R	7681083	CT	'C'	TAAACTAAA	INS	TAAACTAAA	0.222	mutect2	intron_variant	MODIFIER	Nlg1	intron	Nlg1	FBgn0051146
A373R7	3R	8541164	CTCAT	'C'	CAGGCTCAT	INS	CAGGCTCAT	0.273	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45575	intergenic	intergenic	intergenic
A373R7	3R	9340085	C	'CGT'	CTAGCGTAT	INS	CTAGCGTAT	0.25	mutect2	upstream_gene_variant	MODIFIER	CR43301	intergenic	intergenic	intergenic
A373R7	3R	10300904	A	'AAACAATTC'	AAAAAAAAA	INS	TTTTTTTTT	0.571	strelka	3_prime_UTR_variant	MODIFIER	CG43143	3UTR	CG43143	FBgn0262617
A373R7	3R	11094234	ACG	'A'	TTCAACGCG	INS	TTCAACGCG	0.167	mutect2	downstream_gene_variant	MODIFIER	CG43449	intergenic	intergenic	intergenic
A373R7	3R	11099387	T	'TCA'	TCACTCACA	INS	TCACTCACA	0.136	strelka	upstream_gene_variant	MODIFIER	CR45579	intergenic	intergenic	intergenic
A373R7	3R	11175062	TTGCGTCTG	'T'	ACTCTTGCG	INS	ACTCTTGCG	0.667	strelka	upstream_gene_variant	MODIFIER	Ugt35b	intron	Ugt86Dj	FBgn0040250
A373R7	3R	11175072	CATA	'C'	CTGACATAA	INS	CTGACATAA	0.667	strelka	upstream_gene_variant	MODIFIER	Ugt35b	intron	Ugt86Dj	FBgn0040250
A373R7	3R	11232191	T	'TAGG'	ACTTTAGGA	INS	ACTTTAGGA	0.5	mutect2	splice_acceptor_variant&intron_variant	HIGH	CG14701	intron	CG14701	FBgn0037883
A373R7	3R	11271418	T	'TC'	CTCATCCCC	INS	CTCATCCCC	0.364	strelka	non_coding_transcript_exon_variant	MODIFIER	CR31386	exon_5	CR31386	FBgn0051386
A373R7	3R	11407229	A	'AC'	AAAAACGGA	INS	TCCGTTTTT	0.5	mutect2	3_prime_UTR_variant	MODIFIER	pros	3UTR	pros	FBgn0004595
A373R7	3R	11498579	GA	'G'	CACGGAATG	INS	CACGGAATG	0.286	mutect2	upstream_gene_variant	MODIFIER	dpr5	intergenic	intergenic	intergenic
A373R7	3R	11513359	T	'TG'	GCAGTGGGC	INS	GCAGTGGGC	0.375	strelka	intergenic_region	MODIFIER	dpr5-dpr4	intergenic	intergenic	intergenic
A373R7	3R	11734170	CA	'C'	GGACCAGGG	INS	GGACCAGGG	0.222	mutect2	upstream_gene_variant	MODIFIER	CG14721	intergenic	intergenic	intergenic
A373R7	3R	11811826	TG	'T'	GAATTGCAC	INS	GAATTGCAC	0.2	mutect2	downstream_gene_variant	MODIFIER	glo	intron	ClC-a	FBgn0051116
A373R7	3R	12055032	AAATATGT	'A'	AGAAAAATA	INS	AGAAAAATA	0.222	mutect2	intergenic_region	MODIFIER	CG14739-CG14740	intergenic	intergenic	intergenic
A373R7	3R	12137820	GT	'G'	GGGGGTTTT	INS	GGGGGTTTT	0.25	strelka	downstream_gene_variant	MODIFIER	dpr15	intergenic	intergenic	intergenic
A373R7	3R	12330138	A	'AC'	AACCACCCC	INS	GGGGTGGTT	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	CG10013	exon_1	CR45583	FBgn0267143
A373R7	3R	14475444	CACTTGAATAGCCAGAATGATCACCTCTAAAT	'C'	GAGACACTT	INS	GAGACACTT	0	consensus	intron_variant	MODIFIER	cv-c	intron	cv-c	FBgn0086901
A373R7	3R	14727673	AC	'A'	ACCAACCGA	INS	ACCAACCGA	0.25	strelka	upstream_gene_variant	MODIFIER	kibra	intron	CG7530	FBgn0038256
A373R7	3R	16114598	T	'TG'	TTGTTGGGG	INS	TTGTTGGGG	0.231	strelka	upstream_gene_variant	MODIFIER	Sb	intergenic	intergenic	intergenic
A373R7	3R	16244552	CG	'C'	TAACCGTCT	INS	TAACCGTCT	0.4	mutect2,strelka	intron_variant	MODIFIER	tara	intron	tara	FBgn0040071
A373R7	3R	16576714	CGT	'C'	TATGCGTGT	INS	TATGCGTGT	0.75	strelka	upstream_gene_variant	MODIFIER	CG14903	intron	Scp2	FBgn0020907
A373R7	3R	16638751	AC	'A'	TCTCACCAC	INS	TCTCACCAC	0.333	strelka	3_prime_UTR_variant	MODIFIER	Fas1	3UTR	Fas1	FBgn0262742
A373R7	3R	17118715	GCA	'G'	ATTCGCACA	INS	ATTCGCACA	0.5	strelka	upstream_gene_variant	MODIFIER	CG34278	intron	cher	FBgn0014141
A373R7	3R	18291290	CGTTT	'C'	GGTACGTTT	INS	GGTACGTTT	0.182	mutect2	frameshift_variant	HIGH	l(3)05822	exon_2	l(3)05822	FBgn0010877
A373R7	3R	18448194	C	'CA'	CCGCCCCTT	INS	CCGCCCCTT	0.333	mutect2	upstream_gene_variant	MODIFIER	fru	intron	fru	FBgn0004652
A373R7	3R	18525152	GA	'G'	CCGTGAAAA	INS	CCGTGAAAA	0.214	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
A373R7	3R	18605016	AG	'A'	AAATAGGGG	INS	AAATAGGGG	0.5	mutect2,strelka	downstream_gene_variant	MODIFIER	CG14305	intron	CG14304	FBgn0038629
A373R7	3R	19005103	AT	'A'	TGTTATCCC	INS	TGTTATCCC	0.231	strelka	intron_variant	MODIFIER	gukh	intron	gukh	FBgn0026239
A373R7	3R	20777275	CCGAT	'C'	CTTGCCGAT	INS	CTTGCCGAT	0	consensus	upstream_gene_variant	MODIFIER	Takl1	intron	Syp	FBgn0038826
A373R7	3R	21330851	TATCCTTTGATGCCCGACACGAGTGAAAACGACACTAC	'T'	TCCATATCC	INS	TCCATATCC	0.5	strelka	intron_variant	MODIFIER	CG16791	intron	CG16791	FBgn0038881
A373R7	3R	21487756	CA	'C'	TATCCAAAA	INS	TATCCAAAA	0.211	strelka	downstream_gene_variant	MODIFIER	CG7922	intergenic	intergenic	intergenic
A373R7	3R	22325402	GGAGC	'G'	TCATGGAGC	INS	TCATGGAGC	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	CG34377	intergenic	intergenic	intergenic
A373R7	3R	22530474	TA	'T'	CGCGTAGGT	INS	CGCGTAGGT	0.286	mutect2	5_prime_UTR_variant	MODIFIER	CG33099	5UTR	CG33099	FBgn0053099
A373R7	3R	22994894	TA	'T'	CAGTTACAG	INS	CAGTTACAG	0.2	mutect2	upstream_gene_variant	MODIFIER	CR43454	intron	Nha2	FBgn0263390
A373R7	3R	23393899	G	'GA'	TGCCGTTCG	INS	CGAACGGCA	0.333	mutect2	downstream_gene_variant	MODIFIER	CR43387	intergenic	intergenic	intergenic
A373R7	3R	23644930	AAC	'A'	ATAAAACAC	INS	ATAAAACAC	0.333	mutect2	intron_variant	MODIFIER	CG31145	intron	CG31145	FBgn0051145
A373R7	3R	23708227	T	'TTA'	TTTTTTTTT	INS	TTTTTTTTT	0.667	mutect2	3_prime_UTR_variant	MODIFIER	CG31414	3UTR	Gba1b	FBgn0051414
A373R7	3R	24082743	CGT	'C'	TATGCGTGT	INS	TATGCGTGT	0.333	strelka	intron_variant	MODIFIER	4EHP	intron	4EHP	FBgn0053100
A373R7	3R	24342173	GA	'G'	AATTGATTT	INS	AATTGATTT	0.25	mutect2	upstream_gene_variant	MODIFIER	Ms	intron	Ms	FBgn0011581
A373R7	3R	24870815	TA	'T'	TGAGTAAAA	INS	TGAGTAAAA	0.444	strelka	5_prime_UTR_variant	MODIFIER	CycB3	5UTR	CycB3	FBgn0015625
A373R7	3R	25307183	GAA	'G'	TGAGGAATT	INS	TGAGGAATT	0.455	mutect2,strelka	frameshift_variant	HIGH	CG10550	exon_3	CG10550	FBgn0039321
A373R7	3R	25342859	CG	'C'	TCTACGAGG	INS	TCTACGAGG	0.273	mutect2,strelka	frameshift_variant	HIGH	rha	exon_5	rha	FBgn0027376
A373R7	3R	25365265	AG	'A'	AAAGAGGGG	INS	AAAGAGGGG	1	strelka	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
A373R7	3R	25391702	CA	'C'	TCGCCACTT	INS	TCGCCACTT	0.222	mutect2	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
A373R7	3R	25604527	GA	'G'	GAAGGAAAA	INS	GAAGGAAAA	0.333	strelka	3_prime_UTR_variant	MODIFIER	msi	intron	ymp	FBgn0261287
A373R7	3R	25904999	ATC	'A'	GCACATCGA	INS	GCACATCGA	0.5	strelka	upstream_gene_variant	MODIFIER	CG42235	ncRNA	CR43259	FBgn0262904
A373R7	3R	25911189	T	'TG'	CGGCTGGGG	INS	CGGCTGGGG	0.25	mutect2,strelka	frameshift_variant	HIGH	CG42235	exon_6	CG42235	FBgn0250757
A373R7	3R	26072148	CCA	'C'	GAAGCCACA	INS	GAAGCCACA	0.333	strelka	upstream_gene_variant	MODIFIER	CR44950	intergenic	intergenic	intergenic
A373R7	3R	26194377	AAT	'A'	CGCGAATGT	INS	CGCGAATGT	0.25	mutect2	upstream_gene_variant	MODIFIER	CG34130	intergenic	intergenic	intergenic
A373R7	3R	26416551	CACA	'C'	GGCACACAA	INS	GGCACACAA	0.333	mutect2,strelka	downstream_gene_variant	MODIFIER	CG5432	intergenic	intergenic	intergenic
A373R7	3R	26617464	CT	'C'	ACCACTTTT	INS	ACCACTTTT	0.333	mutect2	upstream_gene_variant	MODIFIER	TwdlM	intergenic	intergenic	intergenic
A373R7	3R	26713665	CT	'C'	TGCACTGGC	INS	TGCACTGGC	0.273	mutect2	frameshift_variant	HIGH	amon	exon_1	amon	FBgn0023179
A373R7	3R	27197936	A	'AGT'	ATGAAGTGA	INS	TCACTTCAT	0.231	mutect2,strelka	upstream_gene_variant	MODIFIER	Ser	intergenic	intergenic	intergenic
A373R7	3R	27637761	TTA	'T'	GGGTTTATT	INS	GGGTTTATT	0.188	mutect2,strelka	upstream_gene_variant	MODIFIER	CG5611	intron	Mtl	FBgn0039532
A373R7	3R	27772326	GAGC	'G'	GCAGGAGCA	INS	GCAGGAGCA	0.2	strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
A373R7	3R	28224731	GT	'G'	GTTTGTTTT	INS	GTTTGTTTT	0.4	mutect2,strelka	intron_variant	MODIFIER	CG34354	intron	CG34354	FBgn0085383
A373R7	3R	28297567	TA	'T'	TTTGTAAGC	INS	TTTGTAAGC	0.273	strelka	upstream_gene_variant	MODIFIER	CR44229	intergenic	intergenic	intergenic
A373R7	3R	29014375	CGT	'C'	TGCCCGTGT	INS	TGCCCGTGT	0.5	strelka	intron_variant	MODIFIER	wat	intron	wat	FBgn0039620
A373R7	3R	29180296	ATT	'A'	TCATATTTC	INS	TCATATTTC	0.273	mutect2,strelka	intron_variant	MODIFIER	CG14509	intron	CG14509	FBgn0039647
A373R7	3R	29245752	T	'TGG'	GGCCTGGGG	INS	GGCCTGGGG	0.136	strelka	frameshift_variant	HIGH	SP1029	exon_6	SP1029	FBgn0263236
A373R7	3R	29602985	G	'GT'	ATTTGTTTT	INS	AAAACAAAT	0.308	strelka	upstream_gene_variant	MODIFIER	CG7568	intron	alph	FBgn0086361
A373R7	3R	29627992	CT	'C'	AGGACTTTA	INS	AGGACTTTA	0.364	strelka	downstream_gene_variant	MODIFIER	Dop1R2	intergenic	intergenic	intergenic
A373R7	3R	29685721	AT	'A'	ATCAATAAA	INS	ATCAATAAA	0.231	strelka	3_prime_UTR_variant	MODIFIER	Gycalpha99B	3UTR	Gycalpha99B	FBgn0013972
A373R7	3R	29916529	CT	'C'	CATCCTCGG	INS	CATCCTCGG	0.286	mutect2	frameshift_variant	HIGH	trp	exon_10	trp	FBgn0003861
A373R7	3R	29923235	GA	'G'	ATCGGAAAA	INS	ATCGGAAAA	0.158	strelka	3_prime_UTR_variant	MODIFIER	Jon99Ciii	3UTR	Jon99Ciii	FBgn0003357
A373R7	3R	30293120	CA	'C'	ATACCAAAA	INS	ATACCAAAA	0.5	mutect2,strelka	intron_variant	MODIFIER	hdc	intron	hdc	FBgn0010113
A373R7	3R	30640464	T	'TA'	GCGTTAAAA	INS	GCGTTAAAA	0.3	strelka	downstream_gene_variant	MODIFIER	CG31013	intergenic	intergenic	intergenic
A373R7	3R	31150151	CA	'C'	CCGCCAAAA	INS	CCGCCAAAA	0.278	mutect2,strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
A373R7	3R	31176862	CT	'C'	CCAACTTTT	INS	CCAACTTTT	1	mutect2,strelka	downstream_gene_variant	MODIFIER	mesh	intron	Gycbeta100B	FBgn0013973
A373R7	4	714988	A	'AT'	TCTGATTGT	INS	ACAATCAGA	0.667	mutect2,strelka	intron_variant	MODIFIER	ey	intron	ey	FBgn0005558
A373R7	4	983805	AC	'A'	AAGAACAGC	INS	AAGAACAGC	0.364	mutect2,strelka	intergenic_region	MODIFIER	fuss-toy	intergenic	intergenic	intergenic
A373R7	X	672092	CT	'C'	ACGTCTTAA	INS	ACGTCTTAA	0.3	strelka	intergenic_region	MODIFIER	SkpA-sdk	intergenic	intergenic	intergenic
A373R7	X	1060941	TA	'T'	TTACTAGTT	INS	TTACTAGTT	0.667	mutect2	intron_variant	MODIFIER	CR44779	ncRNA	CR44779	FBgn0266005
A373R7	X	1485326	T	'TGCA'	CACATGCAG	INS	CACATGCAG	0.222	mutect2	3_prime_UTR_variant	MODIFIER	Nmdar2	3UTR	Nmdar2	FBgn0053513
A373R7	X	2574132	C	'CG'	TGGGCGATA	INS	TGGGCGATA	0.364	strelka	downstream_gene_variant	MODIFIER	Vha36-3	intron	Pdfr	FBgn0260753
A373R7	X	3250655	GA	'G'	AAGCGATCG	INS	AAGCGATCG	0.667	strelka	frameshift_variant	HIGH	Sgs4	exon	Sgs4	FBgn0003374
A373R7	X	3450835	T	'TG'	TCCATGGGC	INS	TCCATGGGC	0.5	mutect2,strelka	upstream_gene_variant	MODIFIER	CG12535	ncRNA	CR44999	FBgn0266350
A373R7	X	3776923	G	'GA'	CGTTGATTA	INS	TAATCAACG	0.333	mutect2	frameshift_variant	HIGH	tlk	exon_2	Tlk	FBgn0283657
A373R7	X	3850397	C	'CCA'	ATCCCCAAC	INS	ATCCCCAAC	0.375	strelka	frameshift_variant	HIGH	ec	exon_2	ec	FBgn0000542
A373R7	X	4132153	GC	'G'	ACTGGCCAA	INS	ACTGGCCAA	0.214	strelka	frameshift_variant	HIGH	GlcAT-I	exon	GlcAT-I	FBgn0066114
A373R7	X	4325155	T	'TCG'	CCGCTCGCA	INS	CCGCTCGCA	0.667	mutect2	upstream_gene_variant	MODIFIER	mRpL33	intron	norpA	FBgn0262738
A373R7	X	4936883	A	'ACG'	TCATACGTG	INS	CACGTATGA	0.375	mutect2,strelka	upstream_gene_variant	MODIFIER	Ptp4E	intron	CG44774	FBgn0266000
A373R7	X	5026704	GT	'G'	CTTCGTTTT	INS	CTTCGTTTT	0.5	strelka	intron_variant	MODIFIER	CR44833	ncRNA	CR44833	FBgn0266096
A373R7	X	5994493	GTTT	'G'	TGTTGTTTT	INS	TGTTGTTTT	0.5	strelka	downstream_gene_variant	MODIFIER	CG5966	intergenic	intergenic	intergenic
A373R7	X	6409802	GA	'G'	GCTGGAGCC	INS	GCTGGAGCC	0.286	mutect2	intergenic_region	MODIFIER	CG33669-CG33668	intergenic	intergenic	intergenic
A373R7	X	6719276	ACACACAC	'A'	ATACACACA	INS	ATACACACA	0.5	strelka	3_prime_UTR_variant	MODIFIER	CG14441	3UTR	CG14441	FBgn0029895
A373R7	X	7459762	T	'TG'	GGACTGGTG	INS	GGACTGGTG	0.333	mutect2	downstream_gene_variant	MODIFIER	CR44500	intergenic	intergenic	intergenic
A373R7	X	11676131	AT	'A'	TATTATTTT	INS	TATTATTTT	0.375	strelka	3_prime_UTR_variant	MODIFIER	Ptp10D	3UTR	Ptp10D	FBgn0004370
A373R7	X	12366025	ATATG	'A'	GGTCATATG	INS	GGTCATATG	0.5	mutect2	intergenic_region	MODIFIER	Ten-a-CG2577	intergenic	intergenic	intergenic
A373R7	X	12628892	GT	'G'	GCGGGTGAA	INS	GCGGGTGAA	0.2	mutect2	frameshift_variant	HIGH	Aven	exon	Aven	FBgn0030410
A373R7	X	13048808	AT	'A'	AAACATATT	INS	AAACATATT	0.4	mutect2,strelka	downstream_gene_variant	MODIFIER	CG12715	intron	rad	FBgn0265597
A373R7	X	14234034	CG	'C'	ACTGCGCTA	INS	ACTGCGCTA	0.5	mutect2	5_prime_UTR_variant	MODIFIER	CG42271	exon_1	CG42271	FBgn0259166
A373R7	X	15473582	C	'CT'	CTGACTGGT	INS	CTGACTGGT	0.6	mutect2,strelka	frameshift_variant	HIGH	CG9203	exon	mh	FBgn0267977
A373R7	X	15739209	CT	'C'	TGCACTGCT	INS	TGCACTGCT	0.25	mutect2	upstream_gene_variant	MODIFIER	Arp6	intergenic	intergenic	intergenic
A373R7	X	16120815	GC	'G'	CAAGGCCGG	INS	CAAGGCCGG	1	mutect2,strelka	frameshift_variant	HIGH	disco-r	exon	disco-r	FBgn0042650
A373R7	X	16636790	T	'TG'	CAAATGGGA	INS	CAAATGGGA	1	mutect2	5_prime_UTR_variant	MODIFIER	Rok	exon_1	Rok	FBgn0026181
A373R7	X	16647934	GCA	'G'	CGCGGCACA	INS	CGCGGCACA	0.286	mutect2	3_prime_UTR_variant	MODIFIER	mthl1	3UTR	mthl1	FBgn0030766
A373R7	X	16986671	AGT	'A'	ATTGAGTAA	INS	ATTGAGTAA	0.389	mutect2,strelka	intron_variant	MODIFIER	CG45002	intron	CG45002	FBgn0266354
A373R7	X	17152857	G	'GC'	CTAGGCATT	INS	AATGCCTAG	0.444	mutect2,strelka	frameshift_variant	HIGH	xmas-1	exon	xmas-1	FBgn0016080
A373R7	X	17568421	TC	'T'	TATGTCCTC	INS	TATGTCCTC	0.286	mutect2	frameshift_variant	HIGH	ppk23	exon_2	ppk23	FBgn0030844
A373R7	X	18993892	T	'TC'	CATTTCAGA	INS	CATTTCAGA	0.333	mutect2	intron_variant	MODIFIER	CG43759	intron	CG43759	FBgn0264090
A373R7	X	20833917	G	'GGC'	TTCTGGCGC	INS	GCGCCAGAA	0.231	mutect2,strelka	intron_variant	MODIFIER	shakB	intron	shakB	FBgn0085387
A373R7	X	21244243	A	'ATC'	GACAATCTC	INS	GAGATTGTC	0.4	mutect2	intron_variant	MODIFIER	CG32521	intron	CG32521	FBgn0052521
A373R7	X	21431386	CA	'C'	CATACATAC	INS	CATACATAC	0.25	mutect2	upstream_gene_variant	MODIFIER	CG10918	intron	DIP-beta	FBgn0259245
A373R7	X	22431264	TTTCGATGTAAA	'T'	TCGCTTTCG	INS	TCGCTTTCG	0.4	strelka	intergenic_region	MODIFIER	CG41562-CG14621	intergenic	intergenic	intergenic
A373R7	Y	490711	TGTAGCCATGATG	'T'	GCACTGTAG	INS	GCACTGTAG	0.333	mutect2	conservative_inframe_deletion	MODERATE	kl-3	exon_10	kl-3	FBgn0267432
A373R9	2L	4438899	C	'CA'	GGGGCAAAA	INS	GGGGCAAAA	0.0943	strelka	upstream_gene_variant	MODIFIER	CG15432	intron	CG15431	FBgn0031602
A373R9	2L	5362422	A	'AC'	AAAAAAAAA	INS	TTTTTTTTT	0.214	strelka	intron_variant	MODIFIER	nompC	intron	nompC	FBgn0016920
A373R9	2L	5483864	GTTGGCTCAAATCTA	'G'	AAATGTTGG	INS	AAATGTTGG	0.208	strelka	upstream_gene_variant	MODIFIER	CR45287	intergenic	intergenic	intergenic
A373R9	2L	5483883	ACTC	'A'	AGATACTCT	INS	AGATACTCT	0.227	strelka	upstream_gene_variant	MODIFIER	CR45287	intergenic	intergenic	intergenic
A373R9	2L	7613334	A	'AT'	TTAAATTTC	INS	GAAATTTAA	0.13	strelka	intron_variant	MODIFIER	CG6739	intron	CG6739	FBgn0031926
A373R9	2L	8351610	ATATACGTACAACTTTTCTATATAC	'A'	TGCCATATA	INS	TGCCATATA	0.217	strelka	upstream_gene_variant	MODIFIER	Mur29B	intergenic	intergenic	intergenic
A373R9	2L	10789938	G	'GT'	AGGTGTGTT	INS	AACACACCT	0.174	strelka	upstream_gene_variant	MODIFIER	CR44582	intron	CG31869	FBgn0051869
A373R9	2L	14271452	GA	'G'	AGCCGAAAA	INS	AGCCGAAAA	0.0769	strelka	upstream_gene_variant	MODIFIER	CG32971	intron	wb	FBgn0261563
A373R9	2L	16583819	G	'GTTTTGTTGTTTTATCC'	CACCGCTTT	INS	AAAGCGGTG	0.233	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
A373R9	2L	17164299	G	'GAAAAAATAAAAATAATA'	AAAAGAAAA	INS	TTTTCTTTT	0.25	strelka	intron_variant	MODIFIER	beat-IIIa	intron	CG34106	FBgn0083942
A373R9	2L	22715852	GT	'G'	AAACGTTTT	INS	AAACGTTTT	0.093	strelka	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
A373R9	2R	503706	AT	'A'	CTTTATTTT	INS	CTTTATTTT	0.115	strelka	intron_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
A373R9	2R	4249855	GA	'G'	TGGCGAAAC	INS	TGGCGAAAC	0.0755	strelka	intergenic_region	MODIFIER	IntS3-Gprk1	intergenic	intergenic	intergenic
A373R9	2R	8492281	CGT	'C'	TGGACGTGT	INS	TGGACGTGT	0.188	strelka	intron_variant	MODIFIER	mtt	intron	mtt	FBgn0050361
A373R9	2R	10513522	TTA	'T'	TAGGTTATA	INS	TAGGTTATA	0.159	strelka	downstream_gene_variant	MODIFIER	lola	intron	lola	FBgn0283521
A373R9	2R	11105369	GT	'G'	AAATGTTTT	INS	AAATGTTTT	0.2	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
A373R9	2R	12271732	AAATAACTAAAAG	'A'	AAAAAAATA	INS	AAAAAAATA	0.364	mutect2	intron_variant	MODIFIER	Cam	intron	Cam	FBgn0000253
A373R9	2R	12551776	TTG	'T'	TTTTTTGTT	INS	TTTTTTGTT	0.208	strelka	intron_variant	MODIFIER	fra	intron	fra	FBgn0011592
A373R9	2R	13310468	G	'GA'	GGGGGGCTG	INS	CAGCCCCCC	0.182	strelka	intergenic_region	MODIFIER	CG17047-CR44206	intergenic	intergenic	intergenic
A373R9	2R	17134852	TA	'T'	AAATTAAAA	INS	AAATTAAAA	0.125	strelka	3_prime_UTR_variant	MODIFIER	CG11400	3UTR	CG11400	FBgn0034198
A373R9	2R	17818717	AT	'A'	TCTTATTTT	INS	TCTTATTTT	0.0952	strelka	upstream_gene_variant	MODIFIER	grh	intron	grh	FBgn0259211
A373R9	2R	17893308	GAGAC	'G'	GAGAGAGAC	INS	GAGAGAGAC	0.0455	mutect2	upstream_gene_variant	MODIFIER	PPO1	intron	Elk	FBgn0011589
A373R9	2R	18293557	ATTTGCAAGGGTACGAT	'A'	GAATATTTG	INS	GAATATTTG	0.323	strelka	5_prime_UTR_variant	MODIFIER	CG14502	5UTR	CG14502	FBgn0034321
A373R9	2R	18390531	TTG	'T'	ATCATTGGC	INS	ATCATTGGC	0.343	strelka	upstream_gene_variant	MODIFIER	CG15067	intron	CG15068	FBgn0040733
A373R9	2R	20650040	G	'GTATATATGTACATA'	ATAAGTACC	INS	GGTACTTAT	0.185	strelka	downstream_gene_variant	MODIFIER	DMAP1	intron	Lrt	FBgn0034540
A373R9	3L	357461	GA	'G'	TAAAGAATT	INS	TAAAGAATT	0.0577	mutect2	3_prime_UTR_variant	MODIFIER	CG1231	3UTR	CG1231	FBgn0035134
A373R9	3L	2321476	A	'ATGTGGTTTTCATTCGCATGCGGAT'	AATAATGTT	INS	AACATTATT	0.133	strelka	upstream_gene_variant	MODIFIER	CR45427	intergenic	intergenic	intergenic
A373R9	3L	2441562	A	'AATTTT'	TGGCAATTT	INS	AAATTGCCA	0.16	mutect2,strelka	intron_variant	MODIFIER	CG45186	intron	CG45186	FBgn0266696
A373R9	3L	6169562	TTTTTTTG	'T'	TTTTTTTTT	INS	TTTTTTTTT	0.0323	mutect2	splice_region_variant	LOW	CG10289	3UTR	CG10289	FBgn0035688
A373R9	3L	7107244	TACAAGGCAGC	'T'	TTATTACAA	INS	TTATTACAA	0.222	strelka	intron_variant	MODIFIER	form3	intron	form3	FBgn0053556
A373R9	3L	9179149	ACACT	'A'	CCTTACACT	INS	CCTTACACT	0.0508	mutect2	splice_region_variant&intron_variant	LOW	Rdl	intron	Rdl	FBgn0004244
A373R9	3L	10580953	TA	'T'	ACTCTATTT	INS	ACTCTATTT	0.0816	mutect2	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
A373R9	3L	11010384	GTC	'G'	TTCGGTCTC	INS	TTCGGTCTC	0.0851	strelka	upstream_gene_variant	MODIFIER	klu	intergenic	intergenic	intergenic
A373R9	3L	13156855	TCGTCCACAAGTATC	'T'	TAATTCGTC	INS	TAATTCGTC	0.267	strelka	intergenic_region	MODIFIER	CG33262-snky	intergenic	intergenic	intergenic
A373R9	3L	13612654	A	'AATGAAGAGG'	AAAAAAAAC	INS	GTTTTTTTT	0.3	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A373R9	3L	14210743	CT	'C'	ATTCCTTTT	INS	ATTCCTTTT	0.167	strelka	intron_variant	MODIFIER	nuf	intron	nuf	FBgn0013718
A373R9	3L	15553377	TA	'T'	AATTTAAAA	INS	AATTTAAAA	0.152	strelka	upstream_gene_variant	MODIFIER	AGO2	intergenic	intergenic	intergenic
A373R9	3L	20646492	G	'GA'	TTATGAAAA	INS	TTTTCATAA	0.114	strelka	intergenic_region	MODIFIER	CG13251-CR44685	intergenic	intergenic	intergenic
A373R9	3L	21085101	CT	'C'	CCAGCTTTT	INS	CCAGCTTTT	0.119	strelka	downstream_gene_variant	MODIFIER	CG33285	intron	ko	FBgn0020294
A373R9	3L	23674271	C	'CA'	AATGCAAAT	INS	AATGCAAAT	0.136	strelka	intron_variant	MODIFIER	AGO3	intron	AGO3	FBgn0250816
A373R9	3L	27384942	T	'TTTAA'	TATCTTAAA	INS	TATCTTAAA	0.0633	mutect2	intron_variant	MODIFIER	Dbp80	intron	Dbp80	FBgn0024804
A373R9	3R	7299428	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.378	mutect2,strelka	intron_variant	MODIFIER	rn	intron	rn	FBgn0267337
A373R9	3R	11395077	C	'CA'	CAAGCAAAA	INS	CAAGCAAAA	0.167	strelka	3_prime_UTR_variant	MODIFIER	pros	3UTR	pros	FBgn0004595
A373R9	3R	11998276	G	'GTGTGTATGCGAA'	GCGTGTGTG	INS	CACACACGC	0.093	strelka	upstream_gene_variant	MODIFIER	mfas	intron	Tk	FBgn0037976
A373R9	3R	13242030	C	'CGT'	AGTGCGTGT	INS	AGTGCGTGT	0.118	strelka	intron_variant	MODIFIER	Ace	intron	Ace	FBgn0000024
A373R9	3R	20978654	CAA	'C'	GGTACAAAC	INS	GGTACAAAC	0.0455	mutect2	5_prime_UTR_variant	MODIFIER	Calx	exon_1	Calx	FBgn0013995
A373R9	3R	21324318	AT	'A'	AAAAATAGT	INS	AAAAATAGT	0	consensus	intron_variant	MODIFIER	CG16791	intron	CG16791	FBgn0038881
A373R9	3R	21324320	AG	'A'	AAATAGTAG	INS	AAATAGTAG	0	consensus	intron_variant	MODIFIER	CG16791	intron	CG16791	FBgn0038881
A373R9	3R	23605377	AC	'A'	AAAAACACG	INS	AAAAACACG	0.0625	mutect2	upstream_gene_variant	MODIFIER	tRNA:CR31143	intron	CG10184	FBgn0039094
A373R9	3R	25467884	AACAC	'A'	TACAAACAC	INS	TACAAACAC	0.0417	mutect2	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
A373R9	3R	29408351	GTGTATGTGTGTA	'G'	GTGTGTGTA	INS	GTGTGTGTA	0.0426	mutect2	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
A373R9	X	3158126	CA	'C'	CCAACAAAA	INS	CCAACAAAA	0.227	strelka	intron_variant	MODIFIER	N	intron	N	FBgn0004647
A373R9	X	3298165	CGA	'C'	AGAGCGAGA	INS	AGAGCGAGA	0.125	strelka	intron_variant	MODIFIER	dnc	intron	dnc	FBgn0000479
A373R9	X	5154945	AGT	'A'	GTTGAGTGT	INS	GTTGAGTGT	0.0833	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A373R9	X	5580100	C	'CA'	AAAGCAAAA	INS	AAAGCAAAA	0.114	strelka	intergenic_region	MODIFIER	Vsx2-Vsx1	intergenic	intergenic	intergenic
A373R9	X	6793747	TA	'T'	AAGCTAAAA	INS	AAGCTAAAA	0.111	strelka	upstream_gene_variant	MODIFIER	C3G	intron	C3G	FBgn0259228
A373R9	X	7017067	G	'GT'	GTATGTTTT	INS	AAAACATAC	0.2	strelka	upstream_gene_variant	MODIFIER	CG3032	intergenic	intergenic	intergenic
A373R9	X	7076158	GA	'G'	CCAAGAAAA	INS	CCAAGAAAA	0.172	strelka	3_prime_UTR_variant	MODIFIER	Sxl	3UTR	Sxl	FBgn0264270
A373R9	X	7433492	A	'AT'	TTCCATTTT	INS	AAAATGGAA	0.2	strelka	intergenic_region	MODIFIER	CG32726-CR45533	intergenic	intergenic	intergenic
A373R9	X	8531806	GAC	'G'	AGCAGACAC	INS	AGCAGACAC	0.15	strelka	5_prime_UTR_variant	MODIFIER	Nrg	5UTR	Nrg	FBgn0264975
A373R9	X	12924149	TA	'T'	TGGCTAAAA	INS	TGGCTAAAA	0.125	strelka	intron_variant	MODIFIER	fne	intron	fne	FBgn0086675
A373R9	X	13109176	GT	'G'	TTACGTTTT	INS	TTACGTTTT	0.154	strelka	upstream_gene_variant	MODIFIER	Fer3HCH	intron	CG43313	FBgn0263005
A373R9	X	13188518	AT	'A'	AATGATTTT	INS	AATGATTTT	0.267	strelka	downstream_gene_variant	MODIFIER	CG32641	intron	Lgr4	FBgn0085440
A373R9	X	13539115	TAC	'T'	TAACTACAC	INS	TAACTACAC	0.138	strelka	upstream_gene_variant	MODIFIER	Cpr12A	intergenic	intergenic	intergenic
A373R9	X	14593993	TA	'T'	CAATTAAAA	INS	CAATTAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG9413	intron	CG9413	FBgn0030574
A373R9	X	16586118	GCA	'G'	GTTTGCACA	INS	GTTTGCACA	0.182	strelka	upstream_gene_variant	MODIFIER	CG13014	intron	CanA-14F	FBgn0267912
A373R9	X	16617395	G	'GGT'	TTTTGTTTT	INS	AAAACAAAA	0.444	strelka	downstream_gene_variant	MODIFIER	mbt	intron	CG9782	FBgn0030763
A373R9	X	16617402	T	'TG'	TTTTTTTGT	INS	TTTTTTTGT	0	consensus	downstream_gene_variant	MODIFIER	mbt	intron	CG9782	FBgn0030763
A373R9	X	16813525	GT	'G'	TACTGTTTT	INS	TACTGTTTT	0.16	strelka	upstream_gene_variant	MODIFIER	CR44053	intron	CG4829	FBgn0030796
A373R9	X	16817410	CA	'C'	GGGCCAAAA	INS	GGGCCAAAA	0.235	strelka	upstream_gene_variant	MODIFIER	CR44129	intron	CG4829	FBgn0030796
A373R9	X	16838599	CTA	'C'	GTTCCTATA	INS	GTTCCTATA	0.286	strelka	3_prime_UTR_variant	MODIFIER	RSG7	3UTR	RSG7	FBgn0024941
A373R9	X	17295230	GT	'G'	TGTGGTTTT	INS	TGTGGTTTT	0.133	strelka	5_prime_UTR_variant	MODIFIER	Fim	5UTR	Fim	FBgn0024238
A373R9	X	17781682	T	'TTG'	AGTTTTGTG	INS	AGTTTTGTG	0.158	strelka	downstream_gene_variant	MODIFIER	unc-4	intergenic	intergenic	intergenic
A373R9	X	20561257	GAC	'G'	TGGAGACAC	INS	TGGAGACAC	0.12	strelka	intron_variant	MODIFIER	RunxB	intron	RunxB	FBgn0259162
A373R9	X	21105480	AAAG	'A'	GCAGAAAGA	INS	GCAGAAAGA	0.115	strelka	upstream_gene_variant	MODIFIER	CG15446	intron	CG1503	FBgn0031157
A373R9	X	23075792	T	'TA'	AAAGTAAAA	INS	AAAGTAAAA	0.182	strelka	downstream_gene_variant	MODIFIER	CG17163	intron	CG17167	FBgn0039941
A373R9	Y	3245730	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.25	strelka	intergenic_region	MODIFIER	CR41504-CG41423	intergenic	intergenic	intergenic
A512R17	2L	1996377	A	'AT'	CATAATTTG	INS	CAAATTATG	0.308	strelka	upstream_gene_variant	MODIFIER	Obp22a	intergenic	intergenic	intergenic
A512R17	2L	5237322	ATAC	'A'	GTGGATACG	INS	GTGGATACG	0.25	mutect2	5_prime_UTR_variant	MODIFIER	tkv	5UTR	tkv	FBgn0003716
A512R17	2L	5354741	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.333	strelka	intron_variant	MODIFIER	nompC	intron	nompC	FBgn0016920
A512R17	2L	6307777	AT	'A'	TACCATTCG	INS	TACCATTCG	0.158	strelka	upstream_gene_variant	MODIFIER	CG13984	intron	Ddr	FBgn0053531
A512R17	2L	6983294	T	'TG'	ATTATGGAA	INS	ATTATGGAA	0.333	strelka	upstream_gene_variant	MODIFIER	CR44326	intron	uif	FBgn0031879
A512R17	2L	8605473	T	'TG'	CAGTTGGGG	INS	CAGTTGGGG	0.231	strelka	intron_variant	MODIFIER	Sema-1a	intron	Sema-1a	FBgn0011259
A512R17	2L	8765072	GA	'G'	CGGGGAAGA	INS	CGGGGAAGA	0.125	mutect2	downstream_gene_variant	MODIFIER	CG9463	intergenic	intergenic	intergenic
A512R17	2L	10635366	CA	'C'	AAGGCAGGG	INS	AAGGCAGGG	0.3	mutect2,strelka	upstream_gene_variant	MODIFIER	CG7329	intron	CG7329	FBgn0032271
A512R17	2L	10942378	TA	'T'	TACGTAAAA	INS	TACGTAAAA	0.333	strelka	downstream_gene_variant	MODIFIER	CG14072	exon_1	CR44492	FBgn0265685
A512R17	2L	11768727	TA	'T'	AAAGTAAGC	INS	AAAGTAAGC	0.231	strelka	intergenic_region	MODIFIER	Sfp33A1-CG14931	intergenic	intergenic	intergenic
A512R17	2L	12513591	AGT	'A'	TACAAGTGG	INS	TACAAGTGG	0.222	mutect2,strelka	intron_variant	MODIFIER	bun	intron	bun	FBgn0259176
A512R17	2L	14625337	AT	'A'	GTTGATTGT	INS	GTTGATTGT	0.286	strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
A512R17	2L	15444648	A	'AT'	TAAAATTAA	INS	TTAATTTTA	0.333	strelka	downstream_gene_variant	MODIFIER	CR44862	intergenic	intergenic	intergenic
A512R17	2L	15755030	T	'TG'	CGCATGGGC	INS	CGCATGGGC	0.2	strelka	frameshift_variant	HIGH	l(2)35Df	exon	l(2)35Df	FBgn0001986
A512R17	2L	16428477	TA	'T'	AAAATAAAA	INS	AAAATAAAA	0.444	strelka	intron_variant	MODIFIER	CG5888	intron	CG5888	FBgn0028523
A512R17	2L	16531241	C	'CTA'	TTGGCTGTT	INS	TTGGCTGTT	0.333	strelka	upstream_gene_variant	MODIFIER	mir-4943	intron	CG5953	FBgn0032587
A512R17	2L	21244300	GCA	'G'	TCATGCACA	INS	TCATGCACA	0.25	strelka	intron_variant	MODIFIER	Hr39	intron	Hr39	FBgn0261239
A512R17	2L	22747831	A	'AGT'	GCGAAGTGA	INS	TCACTTCGC	0.143	mutect2	downstream_gene_variant	MODIFIER	CR43927	intron	CG40006	FBgn0058006
A512R17	2R	4729251	AT	'A'	CTTCATTAG	INS	CTTCATTAG	0.267	strelka	upstream_gene_variant	MODIFIER	Nipped-B	intergenic	intergenic	intergenic
A512R17	2R	4796146	G	'GGC'	TCTTGGCGA	INS	TCGCCAAGA	0.273	mutect2,strelka	intergenic_region	MODIFIER	CG12547-CG17528	intergenic	intergenic	intergenic
A512R17	2R	5684623	GACA	'G'	CTGAGACAA	INS	CTGAGACAA	0.133	mutect2	intron_variant	MODIFIER	scaf	intron	scaf	FBgn0033033
A512R17	2R	7739580	CCA	'C'	TTCTCCACA	INS	TTCTCCACA	0.308	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG30497	3UTR	CG30497	FBgn0050497
A512R17	2R	9265847	GT	'G'	TCATGTTTT	INS	TCATGTTTT	0.375	strelka	frameshift_variant	HIGH	Pkn	exon_4	Pkn	FBgn0020621
A512R17	2R	9971319	G	'GT'	CCAAGTTAG	INS	CTAACTTGG	0.3	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG12134	5UTR	CG12134	FBgn0033471
A512R17	2R	12221899	TA	'T'	ATTCTAAAA	INS	ATTCTAAAA	0.6	strelka	downstream_gene_variant	MODIFIER	CG8854	intergenic	intergenic	intergenic
A512R17	2R	13528295	TG	'T'	CGACTGCTT	INS	CGACTGCTT	0.25	mutect2,strelka	frameshift_variant	HIGH	Vmat	exon_3	Vmat	FBgn0260964
A512R17	2R	13763689	T	'TC'	CTAATCCCG	INS	CTAATCCCG	0.333	strelka	downstream_gene_variant	MODIFIER	CG6280	intergenic	intergenic	intergenic
A512R17	2R	14180472	G	'GA'	AACTGAAAA	INS	TTTTCAGTT	0.444	strelka	3_prime_UTR_variant	MODIFIER	cg	exon_12	cg	FBgn0000289
A512R17	2R	15425942	GTGCAAACTAA	'G'	GCTAGTGCA	INS	GCTAGTGCA	0.364	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG43729	5UTR	CG43729	FBgn0263980
A512R17	2R	16546711	C	'CCA'	GGAGCCACT	INS	GGAGCCACT	0.133	mutect2	intergenic_region	MODIFIER	loopin-1-Syn2	intergenic	intergenic	intergenic
A512R17	2R	16676437	GT	'G'	ATCCGTTTT	INS	ATCCGTTTT	0.231	strelka	downstream_gene_variant	MODIFIER	CG34457	intron	CG30463	FBgn0050463
A512R17	2R	19348311	A	'AT'	GTCTATTTT	INS	AAAATAGAC	0.333	strelka	downstream_gene_variant	MODIFIER	CG9975	intron	Rgk1	FBgn0264753
A512R17	2R	20820036	GCACACA	'G'	ACAAGCACA	INS	ACAAGCACA	0.222	strelka	downstream_gene_variant	MODIFIER	insc	intergenic	intergenic	intergenic
A512R17	2R	21161599	T	'TAA'	TCAATGCAT	INS	TCAATGCAT	0.105	mutect2	upstream_gene_variant	MODIFIER	CG30389	intergenic	intergenic	intergenic
A512R17	2R	21161600	G	'GGAC'	CAATGCATT	INS	AATGCATTG	0	consensus	upstream_gene_variant	MODIFIER	CG30389	intergenic	intergenic	intergenic
A512R17	2R	22629105	GA	'G'	TGTAGAAAA	INS	TGTAGAAAA	0.214	strelka	downstream_gene_variant	MODIFIER	CG17807	intron	CG33143	FBgn0053143
A512R17	2R	23138263	TA	'T'	AATTTATGC	INS	AATTTATGC	0.214	strelka	upstream_gene_variant	MODIFIER	CG30192	intergenic	intergenic	intergenic
A512R17	2R	23441722	G	'GA'	TACAGAATT	INS	AATTCTGTA	0.25	strelka	upstream_gene_variant	MODIFIER	Or59a	intergenic	intergenic	intergenic
A512R17	2R	24500418	CCG	'C'	TAGGCCGCA	INS	TAGGCCGCA	0.235	mutect2,strelka	upstream_gene_variant	MODIFIER	Ssl	intergenic	intergenic	intergenic
A512R17	2R	25014182	C	'CG'	AATTCGTTT	INS	AATTCGTTT	0.6	mutect2,strelka	upstream_gene_variant	MODIFIER	zip	intron	uzip	FBgn0004055
A512R17	2R	25232448	T	'TA'	TCTGTAAAA	INS	TCTGTAAAA	0.526	strelka	downstream_gene_variant	MODIFIER	Kr	intron	CG9380	FBgn0035094
A512R17	3L	1349580	G	'GGA'	GCAAGGAGA	INS	TCTCCTTGC	0.231	mutect2,strelka	upstream_gene_variant	MODIFIER	CG9166	intron	Ptp61F	FBgn0267487
A512R17	3L	1962993	AT	'A'	GGGCATCGG	INS	GGGCATCGG	0.167	strelka	5_prime_UTR_variant	MODIFIER	mv	5UTR	mv	FBgn0265988
A512R17	3L	3669440	TA	'T'	CAAATAAAA	INS	CAAATAAAA	0.222	strelka	intergenic_region	MODIFIER	CG43098-CR43484	intergenic	intergenic	intergenic
A512R17	3L	3929135	GT	'G'	ATCAGTCAA	INS	ATCAGTCAA	0.222	mutect2	5_prime_UTR_variant	MODIFIER	Eip63F-1	5UTR	Eip63F-1	FBgn0004910
A512R17	3L	3957782	TAC	'T'	GGACTACAT	INS	GGACTACAT	0.167	mutect2	3_prime_UTR_variant	MODIFIER	CG12605	3UTR	CG12605	FBgn0035481
A512R17	3L	4004691	GT	'G'	TTTAGTTTT	INS	TTTAGTTTT	0.25	strelka	3_prime_UTR_variant	MODIFIER	CG14985	3UTR	CG14985	FBgn0035482
A512R17	3L	4055047	A	'ATG'	ATCCATGTG	INS	CACATGGAT	0.235	mutect2,strelka	upstream_gene_variant	MODIFIER	CG18869	intron	CG1136	FBgn0035490
A512R17	3L	4379915	AT	'A'	ATTAATTTT	INS	ATTAATTTT	0.267	strelka	upstream_gene_variant	MODIFIER	CR44360	intron	DopEcR	FBgn0035538
A512R17	3L	5128197	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	CG4597	intergenic	intergenic	intergenic
A512R17	3L	6460278	G	'GT'	TTCTGTTTT	INS	AAAACAGAA	0.286	strelka	intron_variant	MODIFIER	CG42747	intron	CG42747	FBgn0261801
A512R17	3L	6716605	T	'TG'	TGCTTGGGG	INS	TGCTTGGGG	0.429	strelka	frameshift_variant	HIGH	ple	exon_3	ple	FBgn0005626
A512R17	3L	8568453	GA	'G'	GTCCGAAAA	INS	GTCCGAAAA	0.571	mutect2,strelka	frameshift_variant	HIGH	rhea	exon_11	rhea	FBgn0260442
A512R17	3L	10215878	TA	'T'	GTGCTATAT	INS	GTGCTATAT	0.2	mutect2,strelka	frameshift_variant	HIGH	CG8065	exon_1	CG8065	FBgn0036075
A512R17	3L	10216124	AGTT	'A'	AGAAAGTTG	INS	AGAAAGTTG	0.273	mutect2,strelka	disruptive_inframe_deletion	MODERATE	CG8065	exon_1	CG8065	FBgn0036075
A512R17	3L	10775193	A	'ATGATGATG'	ATCGAAAGC	INS	GCTTTCGAT	0.5	strelka	downstream_gene_variant	MODIFIER	CG43245	intergenic	intergenic	intergenic
A512R17	3L	10775197	C	'CGGCTT'	AAAGCCGCA	INS	AAAGCCGCA	0.5	strelka	downstream_gene_variant	MODIFIER	CG43245	intergenic	intergenic	intergenic
A512R17	3L	14434812	AG	'A'	AACTAGGTA	INS	AACTAGGTA	0.25	strelka	intron_variant	MODIFIER	bbg	intron	bbg	FBgn0087007
A512R17	3L	16253645	GA	'G'	TAATGAAGT	INS	TAATGAAGT	0.429	strelka	upstream_gene_variant	MODIFIER	CG13055	intergenic	intergenic	intergenic
A512R17	3L	16540907	TA	'T'	AGGGTAAAA	INS	AGGGTAAAA	0.444	strelka	downstream_gene_variant	MODIFIER	CG13033	intron	CG43373	FBgn0263131
A512R17	3L	17166056	CA	'C'	GAAACAAAC	INS	GAAACAAAC	0.6	mutect2	upstream_gene_variant	MODIFIER	CR43433	intron	Rbp6	FBgn0260943
A512R17	3L	18144978	C	'CT'	GCGGCCCAC	INS	GCGGCCCAC	0.444	mutect2,strelka	frameshift_variant	HIGH	gk	exon	geko	FBgn0020300
A512R17	3L	21537790	GT	'G'	CAGCGTGCC	INS	CAGCGTGCC	0.25	mutect2,strelka	frameshift_variant	HIGH	Rpn10	exon	Rpn10	FBgn0015283
A512R17	3L	22519989	AG	'A'	GAGCAGATA	INS	GAGCAGATA	0.167	strelka	upstream_gene_variant	MODIFIER	mir-957	intergenic	intergenic	intergenic
A512R17	3L	24891388	GAA	'G'	TCTGGAAAA	INS	TCTGGAAAA	0.444	mutect2,strelka	intergenic_region	MODIFIER	scro-CG40472	intergenic	intergenic	intergenic
A512R17	3L	27091150	TA	'T'	CTGTTAAAA	INS	CTGTTAAAA	0.2	strelka	downstream_gene_variant	MODIFIER	CR45177	intergenic	intergenic	intergenic
A512R17	3R	353302	GT	'G'	ACTAGTTTT	INS	ACTAGTTTT	0.3	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A512R17	3R	1692993	CT	'C'	ACAACTAAA	INS	ACAACTAAA	0.462	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R17	3R	1692999	G	'GTA'	AAATGGTGT	INS	ACACCATTT	0.462	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R17	3R	1847434	CGCACGAGA	'C'	GAACCGCAC	INS	GAACCGCAC	0.538	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R17	3R	1847493	G	'GAGAT'	GATCGAGTG	INS	CACTCGATC	0.667	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R17	3R	1847511	AG	'A'	GAATAGGTG	INS	GAATAGGTG	0.571	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R17	3R	3737637	CGGGT	'C'	TTATCGGGT	INS	TTATCGGGT	0.167	mutect2	intron_variant	MODIFIER	Tim17b	intron	Tim17b	FBgn0263977
A512R17	3R	3764605	C	'CG'	TCAGCGGGT	INS	TCAGCGGGT	0.333	strelka	intergenic_region	MODIFIER	CG41128-CG41099	intergenic	intergenic	intergenic
A512R17	3R	9339035	C	'CA'	GTGCCAAAA	INS	GTGCCAAAA	0.214	strelka	upstream_gene_variant	MODIFIER	CG8866	exon_1	CR43301	FBgn0262993
A512R17	3R	9598555	A	'AC'	TTTAACTTG	INS	CAAGTTAAA	0.167	strelka	intron_variant	MODIFIER	CG8312	intron	CG8312	FBgn0037720
A512R17	3R	10156929	AT	'A'	GAAAATTAG	INS	GAAAATTAG	0.25	strelka	frameshift_variant	HIGH	Invadolysin	exon_6	Invadolysin	FBgn0086359
A512R17	3R	12299201	GT	'G'	CCTCGTTTT	INS	CCTCGTTTT	0.286	strelka	downstream_gene_variant	MODIFIER	svp	intron	svp	FBgn0003651
A512R17	3R	13683949	T	'TG'	GTCGTGGTC	INS	GTCGTGGTC	0.222	strelka	5_prime_UTR_variant	MODIFIER	flfl	exon_1	flfl	FBgn0024555
A512R17	3R	13772797	CT	'C'	ATAACTTTT	INS	ATAACTTTT	0.214	strelka	downstream_gene_variant	MODIFIER	Cht5	intron	CG9297	FBgn0038181
A512R17	3R	13811876	GGTC	'G'	GGTGGGTCG	INS	GGTGGGTCG	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	tal-AA	intergenic	intergenic	intergenic
A512R17	3R	14290328	AGT	'A'	ACAAAGTGA	INS	ACAAAGTGA	0.182	mutect2	5_prime_UTR_variant	MODIFIER	CG12207	exon_2	CG12207	FBgn0038220
A512R17	3R	14780207	GT	'G'	GAAAGTTTT	INS	GAAAGTTTT	0.312	strelka	intron_variant	MODIFIER	jvl	intron	jvl	FBgn0263929
A512R17	3R	14874751	C	'CAGTGCCCCTTTGGA'	TTCGCAGCT	INS	TTCGCAGCT	0.667	strelka	upstream_gene_variant	MODIFIER	CG3631	intron	btsz	FBgn0266756
A512R17	3R	14874758	CA	'C'	CTGGCAAAA	INS	CTGGCAAAA	0.667	strelka	upstream_gene_variant	MODIFIER	CG3631	intron	btsz	FBgn0266756
A512R17	3R	14889413	G	'GA'	TCTAGAAAA	INS	TTTTCTAGA	0.3	strelka	splice_region_variant&intron_variant	LOW	CycC	intron	CycC	FBgn0004597
A512R17	3R	14897324	A	'AC'	CTGAACCGG	INS	CCGGTTCAG	0.444	mutect2,strelka	frameshift_variant	HIGH	Nup93-2	exon_3	Nup93-2	FBgn0038274
A512R17	3R	15377790	AAG	'A'	TCCGAAGAG	INS	TCCGAAGAG	0.308	mutect2,strelka	downstream_gene_variant	MODIFIER	Ccm3	intron	Rbp	FBgn0262483
A512R17	3R	15719750	GAC	'G'	AGCAGACAC	INS	AGCAGACAC	0.167	strelka	upstream_gene_variant	MODIFIER	CG31294	intergenic	intergenic	intergenic
A512R17	3R	16663004	CA	'C'	GCAGCAAGT	INS	GCAGCAAGT	0.158	strelka	intron_variant	MODIFIER	Ubx	intron	Ubx	FBgn0003944
A512R17	3R	18398591	AAC	'A'	GACTAACAC	INS	GACTAACAC	0.231	strelka	upstream_gene_variant	MODIFIER	CG44009	intron	Vti1b	FBgn0264751
A512R17	3R	18566948	CA	'C'	TCCCCAAAA	INS	TCCCCAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG43194	intergenic	intergenic	intergenic
A512R17	3R	19340174	TA	'T'	AAATTAAAA	INS	AAATTAAAA	0.375	strelka	intergenic_region	MODIFIER	CR43258-CG43203	intergenic	intergenic	intergenic
A512R17	3R	19975179	CA	'C'	TCACCAGCT	INS	TCACCAGCT	0.214	strelka	frameshift_variant	HIGH	CG31213	exon_3	CG31213	FBgn0051213
A512R17	3R	20573002	GA	'G'	AACAGAAAA	INS	AACAGAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	snoRNA:Psi18S-301	intergenic	intergenic	intergenic
A512R17	3R	21889868	TGA	'T'	ATGCTGACG	INS	ATGCTGACG	0.308	mutect2,strelka	frameshift_variant	HIGH	CG43844	exon	CG43844	FBgn0264426
A512R17	3R	22558815	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.308	strelka	3_prime_UTR_variant	MODIFIER	CG5278	3UTR	CG5278	FBgn0038986
A512R17	3R	24318374	CA	'C'	CTCCCAAAA	INS	CTCCCAAAA	0.308	strelka	5_prime_UTR_variant	MODIFIER	Nab2	5UTR	Nab2	FBgn0028471
A512R17	3R	26083314	GT	'G'	TCAAGTTTT	INS	TCAAGTTTT	0.273	strelka	intron_variant	MODIFIER	dys	intron	dysf	FBgn0039411
A512R17	3R	26605736	GA	'G'	AGAAGAGGT	INS	AGAAGAGGT	0.333	mutect2,strelka	upstream_gene_variant	MODIFIER	CR44951	intergenic	intergenic	intergenic
A512R17	3R	27229118	TTC	'T'	CAGCTTCTC	INS	CAGCTTCTC	0.25	mutect2,strelka	frameshift_variant	HIGH	CG42814	exon	CG42814	FBgn0261996
A512R17	3R	29340215	T	'TAC'	CCAATACAC	INS	CCAATACAC	0.333	mutect2,strelka	intergenic_region	MODIFIER	Cnx99A-CR45547	intergenic	intergenic	intergenic
A512R17	3R	31290794	CA	'C'	CTAGCAAAC	INS	CTAGCAAAC	0.25	strelka	intergenic_region	MODIFIER	ppk24-CG11340	intergenic	intergenic	intergenic
A512R17	X	11774122	C	'CGA'	TCGCCGAAC	INS	TCGCCGAAC	0.667	mutect2	downstream_gene_variant	MODIFIER	m	intron	dy	FBgn0004511
A512R19	2L	610535	GT	'G'	GTTGGTTTT	INS	GTTGGTTTT	0.114	strelka	upstream_gene_variant	MODIFIER	CR43649	intergenic	intergenic	intergenic
A512R19	2L	1461133	GA	'G'	AGCTGAAAA	INS	AGCTGAAAA	0.118	strelka	intergenic_region	MODIFIER	CG43402-CG31928	intergenic	intergenic	intergenic
A512R19	2L	1585368	C	'CT'	TCATCTCCA	INS	TCATCTCCA	0.1	strelka	frameshift_variant	HIGH	CG10869	exon	CG10869	FBgn0031347
A512R19	2L	3200782	A	'AC'	CCTCACCCA	INS	TGGGTGAGG	0.118	strelka	upstream_gene_variant	MODIFIER	CG34393	intergenic	intergenic	intergenic
A512R19	2L	3669032	T	'TAAAA'	TATTTATTA	INS	TATTTATTA	0.263	strelka	upstream_gene_variant	MODIFIER	Sfp24Ba	intron	Sfp24Bd	FBgn0259953
A512R19	2L	3669036	AG	'A'	TATTAGTTA	INS	TATTAGTTA	0.263	strelka	upstream_gene_variant	MODIFIER	Sfp24Ba	intron	Sfp24Bd	FBgn0259953
A512R19	2L	4790240	AAG	'A'	CAGAAAGAG	INS	CAGAAAGAG	0.178	strelka	upstream_gene_variant	MODIFIER	CG3294	intron	CG15630	FBgn0031627
A512R19	2L	4943222	T	'TG'	ACAATGGGG	INS	ACAATGGGG	0.182	strelka	frameshift_variant	HIGH	CG14044	exon_2	CG14044	FBgn0031650
A512R19	2L	7290078	GCAA	'G'	AGCGGCAAC	INS	AGCGGCAAC	0.125	strelka	intergenic_region	MODIFIER	Wnt4-wg	intergenic	intergenic	intergenic
A512R19	2L	7433987	GA	'G'	CAACGAAAA	INS	CAACGAAAA	0.308	strelka	upstream_gene_variant	MODIFIER	CG5958	intergenic	intergenic	intergenic
A512R19	2L	8500648	GA	'G'	TGCCGAAAA	INS	TGCCGAAAA	0.103	strelka	upstream_gene_variant	MODIFIER	Bace	intron	Dh31	FBgn0032048
A512R19	2L	9403920	GCA	'G'	CATCGCACA	INS	CATCGCACA	0.143	strelka	intron_variant	MODIFIER	Shawl	intron	Shawl	FBgn0085395
A512R19	2L	9512184	GAAACATGCATGAA	'G'	TTTTGAAAC	INS	TTTTGAAAC	0.333	strelka	intron_variant	MODIFIER	CG33298	intron	CG33298	FBgn0032120
A512R19	2L	10093172	GT	'G'	GTGCGTTTT	INS	GTGCGTTTT	0.3	strelka	upstream_gene_variant	MODIFIER	CG13133	intron	CG44153	FBgn0265002
A512R19	2L	10227537	CA	'C'	TAACCAAAA	INS	TAACCAAAA	0.138	strelka	upstream_gene_variant	MODIFIER	CG5708	intergenic	intergenic	intergenic
A512R19	2L	10438748	CT	'C'	TTTACTTTT	INS	TTTACTTTT	0.167	strelka	splice_region_variant&intron_variant	LOW	CHIP	intron	STUB1	FBgn0027052
A512R19	2L	10520957	G	'GT'	GGGTGTTTT	INS	AAAACACCC	0.238	strelka	upstream_gene_variant	MODIFIER	Fatp	intergenic	intergenic	intergenic
A512R19	2L	11582210	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.182	strelka	5_prime_UTR_variant	MODIFIER	kek2	exon_1	kek2	FBgn0015400
A512R19	2L	13645448	GT	'G'	GCACGTTTT	INS	GCACGTTTT	0.235	strelka	upstream_gene_variant	MODIFIER	ics	intergenic	intergenic	intergenic
A512R19	2L	14123320	GA	'G'	TGTCGAAAA	INS	TGTCGAAAA	0.185	strelka	intergenic_region	MODIFIER	CG31769-CG17341	intron	CG46301	FBgn0283651
A512R19	2L	14679604	GA	'G'	TCACGAAAA	INS	TCACGAAAA	0.122	strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
A512R19	2L	15349706	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.152	strelka	intergenic_region	MODIFIER	esg-CG15258	intergenic	intergenic	intergenic
A512R19	2L	16009175	GT	'G'	CAGAGTTTT	INS	CAGAGTTTT	0.3	strelka	upstream_gene_variant	MODIFIER	CR43826	intron	beat-Ic	FBgn0028644
A512R19	2L	17819012	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.207	strelka	intron_variant	MODIFIER	CadN2	intron	CadN2	FBgn0262018
A512R19	2L	18126271	C	'CA'	CCACCAAAA	INS	CCACCAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG31785	intron	CG5758	FBgn0032666
A512R19	2L	18170400	G	'GA'	AAATGAAAA	INS	TTTTCATTT	0.174	strelka	intron_variant	MODIFIER	CG42750	intron	CG42750	FBgn0261804
A512R19	2L	18384908	GT	'G'	CATGGTTTT	INS	CATGGTTTT	0.16	strelka	downstream_gene_variant	MODIFIER	CG34171	intron	Fas3	FBgn0000636
A512R19	2L	19164402	G	'GA'	TGAAGAAAA	INS	TTTTCTTCA	0.6	strelka	upstream_gene_variant	MODIFIER	brat	intron	brat	FBgn0010300
A512R19	2L	19602430	CCACA	'C'	TGGGCCACA	INS	TGGGCCACA	0.143	strelka	upstream_gene_variant	MODIFIER	Lar	ncRNA	CR44978	FBgn0266313
A512R19	2L	19625440	TA	'T'	TAGCTAAAA	INS	TAGCTAAAA	0.2	strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
A512R19	2L	19858164	A	'AAAAAG'	ACCAAAAAA	INS	TTTTTTGGT	0.0968	strelka	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
A512R19	2L	20290263	ATATG	'A'	CCATATATG	INS	CCATATATG	0.115	strelka	upstream_gene_variant	MODIFIER	CG12617	intergenic	intergenic	intergenic
A512R19	2L	20534770	ATGACTTTAGCTTGTGT	'A'	AATGATGAC	INS	AATGATGAC	0.385	strelka	downstream_gene_variant	MODIFIER	CG44270	intergenic	intergenic	intergenic
A512R19	2L	20624622	AT	'A'	ATTGATTTT	INS	ATTGATTTT	0.118	strelka	intron_variant	MODIFIER	CR44909	ncRNA	CR44909	FBgn0266214
A512R19	2L	21705643	A	'AC'	AAAAACCCT	INS	AGGGTTTTT	0.121	strelka	intron_variant	MODIFIER	CG31619	intron	nolo	FBgn0051619
A512R19	2L	22927258	CA	'C'	TGATCAAAA	INS	TGATCAAAA	0.16	strelka	intron_variant	MODIFIER	lt	intron	lt	FBgn0002566
A512R19	2R	1248807	TA	'T'	AGAATAAAA	INS	AGAATAAAA	0.25	strelka	intergenic_region	MODIFIER	CR40190-CG40191	intergenic	intergenic	intergenic
A512R19	2R	1727911	TA	'T'	AGCATAAAA	INS	AGCATAAAA	0.125	strelka	frameshift_variant	HIGH	CG41520	exon_3	CG41520	FBgn0087011
A512R19	2R	2551985	A	'AT'	ATTGATTTT	INS	AAAATCAAT	0.286	strelka	downstream_gene_variant	MODIFIER	mir-2279	intron	MFS17	FBgn0058263
A512R19	2R	5964157	TA	'T'	CATTTAAAA	INS	CATTTAAAA	0.316	strelka	downstream_gene_variant	MODIFIER	CG7882	intron	CG7881	FBgn0033048
A512R19	2R	6216939	TA	'T'	TTTCTAAAA	INS	TTTCTAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	l(2)k14710	ncRNA	CR44161	FBgn0265044
A512R19	2R	6438522	A	'AC'	GGAAAATTT	INS	AAATTTTCC	0.273	strelka	intergenic_region	MODIFIER	Pld-CR46075	intergenic	intergenic	intergenic
A512R19	2R	7371253	CAG	'C'	TGCCCAGGC	INS	TGCCCAGGC	0.148	mutect2,strelka	intron_variant	MODIFIER	Dscam1	intron	Dscam1	FBgn0033159
A512R19	2R	7770233	T	'TATGTAGATACATTC'	TATATAGAT	INS	TATATAGAT	0.273	strelka	intron_variant	MODIFIER	CG30497	intron	CG30497	FBgn0050497
A512R19	2R	8394653	CTG	'C'	TACGCTGTG	INS	TACGCTGTG	0.167	strelka	downstream_gene_variant	MODIFIER	CG2121	intron	pdm3	FBgn0261588
A512R19	2R	9835724	GT	'G'	TCCAGTTTT	INS	TCCAGTTTT	0.154	strelka	upstream_gene_variant	MODIFIER	hebe	intron	hebe	FBgn0033448
A512R19	2R	10583269	TCA	'T'	CAAATCACA	INS	CAAATCACA	0.174	strelka	upstream_gene_variant	MODIFIER	psq	intron	psq	FBgn0263102
A512R19	2R	10986186	GT	'G'	TCGCGTTTT	INS	TCGCGTTTT	0.12	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
A512R19	2R	11421693	CT	'C'	ATATCTTTT	INS	ATATCTTTT	0.214	strelka	intron_variant	MODIFIER	Drip	intron	Drip	FBgn0015872
A512R19	2R	11984485	C	'CG'	GCGGCGGGG	INS	GCGGCGGGG	0.308	strelka	upstream_gene_variant	MODIFIER	CG30037	intron	RnrS	FBgn0011704
A512R19	2R	12018033	AGT	'A'	TTCAAGTGT	INS	TTCAAGTGT	0.125	strelka	downstream_gene_variant	MODIFIER	CR44306	intron	otk	FBgn0004839
A512R19	2R	12100589	GCA	'G'	AAGCGCACA	INS	AAGCGCACA	0.13	strelka	intron_variant	MODIFIER	jeb	intron	jeb	FBgn0086677
A512R19	2R	12256147	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.333	strelka	upstream_gene_variant	MODIFIER	Vha36-2	intergenic	intergenic	intergenic
A512R19	2R	13022898	ATG	'A'	CGACATGTG	INS	CGACATGTG	0.333	strelka	intergenic_region	MODIFIER	Su(z)2-CG13323	intergenic	intergenic	intergenic
A512R19	2R	13489105	T	'TTTGGTCAAACGATATCGA'	TCGATTTGA	INS	TCGATTTGA	0.409	strelka	upstream_gene_variant	MODIFIER	cbc	intron	bbc	FBgn0033844
A512R19	2R	13584834	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.107	strelka	intron_variant	MODIFIER	CG6191	intron	CG45088	FBgn0266489
A512R19	2R	14448140	CT	'C'	CGTCCTTTT	INS	CGTCCTTTT	0.107	strelka	intron_variant	MODIFIER	Oaz	intron	Oaz	FBgn0261613
A512R19	2R	14731178	ACAG	'A'	GTCAACAGC	INS	GTCAACAGC	0.107	strelka	intergenic_region	MODIFIER	mspo-CR43428	intergenic	intergenic	intergenic
A512R19	2R	14971870	A	'ATC'	TTGCATCTC	INS	GAGATGCAA	0.12	strelka	frameshift_variant	HIGH	ckn	exon_2	ckn	FBgn0033987
A512R19	2R	15424884	GT	'G'	CCCTGTTTT	INS	CCCTGTTTT	0.194	strelka	5_prime_UTR_variant	MODIFIER	CG43729	exon_1	CG43729	FBgn0263980
A512R19	2R	16150607	CGT	'C'	TATGCGTGT	INS	TATGCGTGT	0.108	strelka	5_prime_UTR_variant	MODIFIER	lbk	exon_1	lbk	FBgn0034083
A512R19	2R	16390631	GAA	'G'	GGCCGAAAT	INS	GGCCGAAAT	0.087	mutect2	downstream_gene_variant	MODIFIER	CG43187	intron	Sema-2b	FBgn0264273
A512R19	2R	17593227	CGT	'C'	CGTCCGTGT	INS	CGTCCGTGT	0.15	strelka	5_prime_UTR_variant	MODIFIER	Smurf	exon_1	Smurf	FBgn0029006
A512R19	2R	17695383	G	'GTTTTTTT'	TGCTGTTTT	INS	AAAACAGCA	0.276	strelka	upstream_gene_variant	MODIFIER	swi2	intergenic	intergenic	intergenic
A512R19	2R	17855404	A	'AT'	TCTTATTTT	INS	AAAATAAGA	0.167	strelka	5_prime_UTR_variant	MODIFIER	olf186-F	5UTR	olf186-F	FBgn0041585
A512R19	2R	17968524	GCA	'G'	ACATGCACA	INS	ACATGCACA	0.13	strelka	intergenic_region	MODIFIER	PpY-55A-dpr13	intergenic	intergenic	intergenic
A512R19	2R	18916132	G	'GGGGGA'	GGGGGCTTG	INS	CAAGCCCCC	0.25	strelka	upstream_gene_variant	MODIFIER	Vha100-3	intron	sano	FBgn0034408
A512R19	2R	20056544	CA	'C'	AGTCCAAAA	INS	AGTCCAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	CR44631	intergenic	intergenic	intergenic
A512R19	2R	20368242	G	'GT'	TTGGGTTTT	INS	AAAACCCAA	0.19	strelka	intergenic_region	MODIFIER	CG11192-CG12484	intergenic	intergenic	intergenic
A512R19	2R	21087176	CA	'C'	TAACCAATA	INS	TAACCAATA	0.103	strelka	3_prime_UTR_variant	MODIFIER	Treh	exon_5	Treh	FBgn0003748
A512R19	2R	21092978	T	'TGCTTCCATTA'	AAAGTGCTC	INS	AAAGTGCTC	0.25	strelka	upstream_gene_variant	MODIFIER	Rbpn-5	intron	CG34396	FBgn0085425
A512R19	2R	21093003	T	'TCATTTCA'	TCATTAGGT	INS	TCATTAGGT	0.267	strelka	upstream_gene_variant	MODIFIER	Rbpn-5	intron	CG34396	FBgn0085425
A512R19	2R	21093004	AGG	'A'	CATTAGGTT	INS	CATTAGGTT	0.267	strelka	upstream_gene_variant	MODIFIER	Rbpn-5	intron	CG34396	FBgn0085425
A512R19	2R	21093010	CAGCCG	'C'	GTTACAGCC	INS	GTTACAGCC	0.267	strelka	upstream_gene_variant	MODIFIER	Rbpn-5	intron	CG34396	FBgn0085425
A512R19	2R	21114786	CCA	'C'	CCACCCACA	INS	CCACCCACA	0.25	strelka	upstream_gene_variant	MODIFIER	CG9394	intron	ktub	FBgn0015721
A512R19	2R	21194879	CAG	'C'	GCATCAGAG	INS	GCATCAGAG	0.2	strelka	downstream_gene_variant	MODIFIER	tud	intron	Lapsyn	FBgn0034602
A512R19	2R	21942562	TAC	'T'	GCACTACAC	INS	GCACTACAC	0.111	strelka	intron_variant	MODIFIER	Fili	intron	Fili	FBgn0085397
A512R19	2R	22150683	CA	'C'	CAACCAAAA	INS	CAACCAAAA	0.1	strelka	intron_variant	MODIFIER	a	intron	a	FBgn0000008
A512R19	2R	22934209	ATG	'A'	ATGCATGTG	INS	ATGCATGTG	0.111	strelka	upstream_gene_variant	MODIFIER	CG3788	intergenic	intergenic	intergenic
A512R19	2R	23157280	TTG	'T'	TCCCTTGTG	INS	TCCCTTGTG	0.2	strelka	downstream_gene_variant	MODIFIER	CG43207	intron	CG9899	FBgn0034829
A512R19	2R	23792683	ACAG	'A'	AGCAACAGC	INS	AGCAACAGC	0.093	strelka	upstream_gene_variant	MODIFIER	CG15800	intron	CG9850	FBgn0034903
A512R19	2R	23885316	C	'CT'	AGTCCTTTT	INS	AGTCCTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	CG4882	intergenic	intergenic	intergenic
A512R19	2R	24480796	GAC	'G'	CACAGACAC	INS	CACAGACAC	0.125	strelka	downstream_gene_variant	MODIFIER	CG16837	intron	CG13579	FBgn0035010
A512R19	3L	649806	GT	'G'	AGGGGTTTT	INS	AGGGGTTTT	0.105	strelka	upstream_gene_variant	MODIFIER	Rev1	intron	Gale	FBgn0035147
A512R19	3L	1187944	C	'CG'	TGAACGGGG	INS	TGAACGGGG	0.214	strelka	upstream_gene_variant	MODIFIER	CG13912	intergenic	intergenic	intergenic
A512R19	3L	1528463	GT	'G'	TTGGGTTTT	INS	TTGGGTTTT	0.138	strelka	downstream_gene_variant	MODIFIER	Ir62a	intron	Iml1	FBgn0035227
A512R19	3L	2617768	CCTT	'C'	TCCTCCTTC	INS	TCCTCCTTC	0.0938	mutect2	downstream_gene_variant	MODIFIER	CR45981	intron	Pxn	FBgn0011828
A512R19	3L	2748015	TGAATCTTG	'T'	TCTTTGAAT	INS	TCTTTGAAT	0.429	strelka	intron_variant	MODIFIER	Mrtf	intron	Mrtf	FBgn0052296
A512R19	3L	3582928	CTG	'C'	GTCTCTGTG	INS	GTCTCTGTG	0.421	strelka	intron_variant	MODIFIER	Eip63E	intron	Eip63E	FBgn0005640
A512R19	3L	6367760	C	'CA'	TTCCCCAAA	INS	TTCCCCAAA	0.368	strelka	downstream_gene_variant	MODIFIER	CR45419	intergenic	intergenic	intergenic
A512R19	3L	6737767	GACT	'G'	GTGGGACTA	INS	GTGGGACTA	0.125	strelka	conservative_inframe_deletion	MODERATE	dikar	exon_7	dikar	FBgn0261934
A512R19	3L	6943018	G	'GA'	AATTGAAAA	INS	TTTTCAATT	0.129	strelka	5_prime_UTR_variant	MODIFIER	tow	exon_1	tow	FBgn0035719
A512R19	3L	8041597	GCAA	'G'	GACAGCAAC	INS	GACAGCAAC	0.125	strelka	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
A512R19	3L	8096002	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.207	strelka	upstream_gene_variant	MODIFIER	CG7565	intron	Ect4	FBgn0262579
A512R19	3L	9033206	CT	'C'	TTAGCTTTT	INS	TTAGCTTTT	0.217	strelka	intergenic_region	MODIFIER	Doc2-Doc1	intergenic	intergenic	intergenic
A512R19	3L	9548934	TAC	'T'	AACATACAC	INS	AACATACAC	0.188	strelka	upstream_gene_variant	MODIFIER	Ir67a	intron	CG42673	FBgn0261555
A512R19	3L	11130163	A	'AG'	GTACAGGGC	INS	GCCCTGTAC	0.125	strelka	frameshift_variant	HIGH	CG42575	exon_4	NaPi-III	FBgn0260795
A512R19	3L	12162081	CGT	'C'	TCTGCGTGT	INS	TCTGCGTGT	0.111	strelka	downstream_gene_variant	MODIFIER	Rh7	intron	CG9760	FBgn0036259
A512R19	3L	12555731	AT	'A'	TTCGATTTT	INS	TTCGATTTT	0.129	strelka	intron_variant	MODIFIER	sowah	intron	sowah	FBgn0036302
A512R19	3L	12867107	C	'CCA'	AACTCAAAA	INS	AACTCAAAA	0.214	strelka	upstream_gene_variant	MODIFIER	CG10943	intergenic	intergenic	intergenic
A512R19	3L	13771886	CA	'C'	TTCCCATTG	INS	TTCCCATTG	0.136	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A512R19	3L	15165652	T	'TA'	GGGCTAAAA	INS	GGGCTAAAA	0.108	strelka	upstream_gene_variant	MODIFIER	CG7011	intergenic	intergenic	intergenic
A512R19	3L	15847162	CT	'C'	TTACCTTTT	INS	TTACCTTTT	0.138	strelka	upstream_gene_variant	MODIFIER	CG32150	intergenic	intergenic	intergenic
A512R19	3L	15946295	AT	'A'	ATACATTTT	INS	ATACATTTT	0.211	strelka	intron_variant	MODIFIER	Pka-C3	intron	Pka-C3	FBgn0000489
A512R19	3L	17570272	GTA	'G'	GCGCGTATG	INS	GCGCGTATG	0.115	strelka	upstream_gene_variant	MODIFIER	snoRNA:Me28S-A576	intron	Eip74EF	FBgn0000567
A512R19	3L	17952714	A	'AT'	GTATATTTT	INS	AAAATATAC	0.6	strelka	3_prime_UTR_variant	MODIFIER	Eip75B	3UTR	Eip75B	FBgn0000568
A512R19	3L	17970547	TTGC	'T'	GCGGTTGCT	INS	GCGGTTGCT	0.143	strelka	disruptive_inframe_deletion	MODERATE	Eip75B	exon_1	Eip75B	FBgn0000568
A512R19	3L	19788049	TA	'T'	AAAGTAAAA	INS	AAAGTAAAA	0.286	strelka	intron_variant	MODIFIER	CG42637	intron	Gyc76C	FBgn0266136
A512R19	3L	20368983	AG	'A'	CTCCAGACA	INS	CTCCAGACA	0.108	strelka	frameshift_variant	HIGH	in	exon	in	FBgn0001259
A512R19	3L	20416253	AAC	'A'	AAAAAACAC	INS	AAAAAACAC	0	consensus	intron_variant	MODIFIER	zye	intron	zye	FBgn0036985
A512R19	3L	23714659	GA	'G'	AATCGAAAA	INS	AATCGAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG17454	intergenic	intergenic	intergenic
A512R19	3L	23877928	C	'CA'	ATAGCAAAA	INS	ATAGCAAAA	0.182	strelka	downstream_gene_variant	MODIFIER	CR43941	intron	CG40470	FBgn0058470
A512R19	3L	24250306	C	'CA'	CTTACAAAA	INS	CTTACAAAA	0.238	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A512R19	3L	24709632	AAATCCTAAAT	'A'	CTAGAAATC	INS	CTAGAAATC	0.324	strelka	intergenic_region	MODIFIER	CR41597-scro	intergenic	intergenic	intergenic
A512R19	3L	24918454	CGCTATT	'C'	GAGCCGCTA	INS	GAGCCGCTA	0.167	strelka	intergenic_region	MODIFIER	scro-CG40472	intergenic	intergenic	intergenic
A512R19	3L	25117644	AT	'A'	TCTGATTAG	INS	TCTGATTAG	0.0741	strelka	upstream_gene_variant	MODIFIER	MED21	intergenic	intergenic	intergenic
A512R19	3L	26032414	TA	'T'	ATTATAAAA	INS	ATTATAAAA	0.273	strelka	intergenic_region	MODIFIER	CG40178-CG40160	intergenic	intergenic	intergenic
A512R19	3L	26665639	CT	'C'	TTCTCTTTT	INS	TTCTCTTTT	0.211	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A512R19	3R	557231	GGGGGA	'G'	TAGGGGGGG	INS	TAGGGGGGG	0.324	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A512R19	3R	2082284	A	'AATTT'	AAAAATATA	INS	TATATTTTT	0.333	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R19	3R	2524987	GC	'G'	GATGGCGGA	INS	GATGGCGGA	0.133	strelka	intergenic_region	MODIFIER	CG45784-CG45783	intron	Myo81F	FBgn0267431
A512R19	3R	2630493	TA	'T'	CTTATAAAA	INS	CTTATAAAA	0.75	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A512R19	3R	3756939	G	'GT'	GAAAGTTTT	INS	AAAACTTTC	0.167	strelka	downstream_gene_variant	MODIFIER	CG41128	intergenic	intergenic	intergenic
A512R19	3R	7420801	CT	'C'	TTTACTTTT	INS	TTTACTTTT	0.231	strelka	5_prime_UTR_variant	MODIFIER	wa-cup	5UTR	wa-cup	FBgn0037502
A512R19	3R	7655963	C	'CT'	CCTGCTTTT	INS	CCTGCTTTT	0.136	strelka	upstream_gene_variant	MODIFIER	Nlg1	intergenic	intergenic	intergenic
A512R19	3R	7681582	ATG	'A'	GGGGATGTG	INS	GGGGATGTG	0.125	strelka	intron_variant	MODIFIER	Nlg1	intron	Nlg1	FBgn0051146
A512R19	3R	8462037	TGCA	'T'	ATTGTGCAG	INS	ATTGTGCAG	0.167	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
A512R19	3R	9784967	G	'GA'	GGTGGAAAA	INS	TTTTCCACC	0.135	strelka	upstream_gene_variant	MODIFIER	CR31514	intron	CG8500	FBgn0037754
A512R19	3R	10294880	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.222	strelka	intron_variant	MODIFIER	CG43143	intron	CG43143	FBgn0262617
A512R19	3R	10641748	CT	'C'	GCCCCTTTT	INS	GCCCCTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	hth	exon_2	CR44018	FBgn0264788
A512R19	3R	10946727	TA	'T'	ACAGTAAAA	INS	ACAGTAAAA	0.129	strelka	upstream_gene_variant	MODIFIER	Tengl4	intergenic	intergenic	intergenic
A512R19	3R	11097004	TAC	'T'	GATGTACAC	INS	GATGTACAC	0.111	strelka	upstream_gene_variant	MODIFIER	CR45579	intergenic	intergenic	intergenic
A512R19	3R	11118443	GCA	'G'	AAAAGCACA	INS	AAAAGCACA	0.2	strelka	upstream_gene_variant	MODIFIER	CG6629	intergenic	intergenic	intergenic
A512R19	3R	11239167	C	'CA'	CTCACAAAC	INS	CTCACAAAC	0.121	strelka	frameshift_variant	HIGH	CG31388	exon_4	CG31388	FBgn0051388
A512R19	3R	11974890	AT	'A'	GTTTATTTT	INS	GTTTATTTT	0.125	strelka	5_prime_UTR_variant	MODIFIER	Tango9	5UTR	Tango9	FBgn0260744
A512R19	3R	12146096	A	'AG'	TCGGAGGGG	INS	CCCCTCCGA	0.138	strelka	intron_variant	MODIFIER	dpr15	intron	dpr15	FBgn0037993
A512R19	3R	12720033	GGA	'G'	TGAGGGAGA	INS	TGAGGGAGA	0.133	strelka	splice_region_variant&intron_variant	LOW	Men	intron	Men	FBgn0002719
A512R19	3R	13985995	G	'GA'	ATACGAAAA	INS	TTTTCGTAT	0.114	strelka	upstream_gene_variant	MODIFIER	rdx	intron	rdx	FBgn0264493
A512R19	3R	14838199	CT	'C'	CTTGCTTTT	INS	CTTGCTTTT	0.0952	strelka	downstream_gene_variant	MODIFIER	CR46024	intron	btsz	FBgn0266756
A512R19	3R	15301597	C	'CA'	ACACCAAAA	INS	ACACCAAAA	0.156	strelka	downstream_gene_variant	MODIFIER	Tm1	intron	Tm1	FBgn0003721
A512R19	3R	15458350	TG	'T'	GGCATGGGG	INS	GGCATGGGG	0.4	strelka	intron_variant	MODIFIER	AdamTS-A	intron	AdamTS-A	FBgn0038341
A512R19	3R	15801220	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.25	strelka	3_prime_UTR_variant	MODIFIER	nsl1	3UTR	nsl1	FBgn0262527
A512R19	3R	16107249	GGCA	'G'	GTTGGGCAG	INS	GTTGGGCAG	0.115	strelka	downstream_gene_variant	MODIFIER	Akt1	intergenic	intergenic	intergenic
A512R19	3R	16535455	CGT	'C'	AGTGCGTGT	INS	AGTGCGTGT	0.143	strelka	intron_variant	MODIFIER	CG42342	intron	CG42342	FBgn0259244
A512R19	3R	16735741	TAC	'T'	CACATACAC	INS	CACATACAC	0.0882	strelka	upstream_gene_variant	MODIFIER	Ubx	intergenic	intergenic	intergenic
A512R19	3R	16861212	C	'CG'	CCTCCGGAA	INS	CCTCCGGAA	0.125	strelka	upstream_gene_variant	MODIFIER	mir-iab-8	ncRNA	iab-8	FBgn0264857
A512R19	3R	18872643	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.167	strelka	upstream_gene_variant	MODIFIER	CG14298	intergenic	intergenic	intergenic
A512R19	3R	19487062	AT	'A'	CCCCATTTT	INS	CCCCATTTT	0.261	strelka	upstream_gene_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
A512R19	3R	19567781	C	'CA'	ACTACAAAA	INS	ACTACAAAA	0.174	strelka	upstream_gene_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
A512R19	3R	19732550	AGT	'A'	TTACAGTGT	INS	TTACAGTGT	0.2	strelka	intron_variant	MODIFIER	GluClalpha	intron	GluClalpha	FBgn0024963
A512R19	3R	21782351	TAC	'T'	AACGTACAC	INS	AACGTACAC	0.0882	strelka	5_prime_UTR_variant	MODIFIER	tsl	exon_1	tsl	FBgn0003867
A512R19	3R	22100289	GA	'G'	GTCCGAAAA	INS	GTCCGAAAA	0.148	strelka	upstream_gene_variant	MODIFIER	CG13407	intergenic	intergenic	intergenic
A512R19	3R	22910865	ATG	'A'	TCCCATGTG	INS	TCCCATGTG	0.158	strelka	intron_variant	MODIFIER	klg	intron	klg	FBgn0017590
A512R19	3R	23195178	C	'CA'	CAAACAAAA	INS	CAAACAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
A512R19	3R	23211411	GT	'G'	AACCGTTTT	INS	AACCGTTTT	0.138	strelka	intron_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
A512R19	3R	23633777	GAC	'G'	CATGGACAC	INS	CATGGACAC	0.0833	strelka	intron_variant	MODIFIER	CG31145	intron	CG31145	FBgn0051145
A512R19	3R	24301197	C	'CAAAA'	TCAACAAAA	INS	TCAACAAAA	0.343	strelka	intron_variant	MODIFIER	crb	intron	crb	FBgn0259685
A512R19	3R	24408055	GCA	'G'	CAGTGCACA	INS	CAGTGCACA	0.185	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
A512R19	3R	24922721	T	'TG'	AGGATGGAA	INS	AGGATGGAA	0.121	strelka	frameshift_variant	HIGH	Mink	exon_2	Mink	FBgn0039250
A512R19	3R	25965289	AC	'A'	GCGAACCTC	INS	GCGAACCTC	0.121	strelka	frameshift_variant	HIGH	boss	exon_5	boss	FBgn0000206
A512R19	3R	27451123	CT	'C'	TCTACTTTT	INS	TCTACTTTT	0.087	strelka	intergenic_region	MODIFIER	CG44290-CG13978	intergenic	intergenic	intergenic
A512R19	3R	28440578	AGT	'A'	CATGAGTGT	INS	CATGAGTGT	0.111	strelka	intron_variant	MODIFIER	beat-VI	intron	beat-VI	FBgn0039584
A512R19	3R	28560695	AGT	'A'	GAGCAGTGT	INS	GAGCAGTGT	0.129	strelka	intergenic_region	MODIFIER	CG12413-fkh	intergenic	intergenic	intergenic
A512R19	3R	29706688	T	'TG'	CAAATGGGG	INS	CAAATGGGG	0.174	strelka	intergenic_region	MODIFIER	dmrt99B-CR45569	intergenic	intergenic	intergenic
A512R19	3R	30264321	A	'AC'	CGAGAAAAC	INS	GTTTTCTCG	0.412	strelka	intergenic_region	MODIFIER	CG18404-CR46113	intergenic	intergenic	intergenic
A512R19	3R	30460827	CA	'C'	TGCCCAAAA	INS	TGCCCAAAA	0.3	strelka	5_prime_UTR_variant	MODIFIER	CDase	exon_1	CDase	FBgn0039774
A512R19	4	584320	AT	'A'	TTTCATTTT	INS	TTTCATTTT	0.222	strelka	downstream_gene_variant	MODIFIER	Ephrin	intron	CG1909	FBgn0039911
A512R19	X	5196363	C	'CT'	AATCCTTTT	INS	AATCCTTTT	0.2	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A512R19	X	8488872	A	'AT'	TTTCATTTT	INS	AAAATGAAA	0.333	strelka	upstream_gene_variant	MODIFIER	CG33223	intron	otu	FBgn0003023
A512R19	X	9074075	A	'AT'	ACCCATCCC	INS	GGGATGGGT	0.2	strelka	upstream_gene_variant	MODIFIER	CG10970	intron	CG44325	FBgn0265413
A512R19	X	9093991	C	'CT'	AAAGCTTTT	INS	AAAGCTTTT	0.208	strelka	3_prime_UTR_variant	MODIFIER	CG7766	3UTR	CG7766	FBgn0030087
A512R19	X	9734181	AT	'A'	TATCATTTT	INS	TATCATTTT	0.273	strelka	intron_variant	MODIFIER	Sp1	intron	Sp1	FBgn0020378
A512R19	X	11068636	A	'ATG'	AAGCATGTG	INS	CACATGCTT	0.231	strelka	downstream_gene_variant	MODIFIER	CR45614	intergenic	intergenic	intergenic
A512R19	X	12840863	TTG	'T'	CTGGTTGTG	INS	CTGGTTGTG	0.167	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
A512R19	X	13072511	GA	'G'	GAGTGAAAA	INS	GAGTGAAAA	0.235	strelka	intron_variant	MODIFIER	rad	intron	rad	FBgn0265597
A512R19	X	13286503	TC	'T'	AGAATCCCA	INS	AGAATCCCA	0.174	strelka	frameshift_variant	HIGH	CG15743	exon_1	CG15743	FBgn0030465
A512R19	X	13529563	A	'AC'	CTTAACCGA	INS	TCGGTTAAG	0.231	strelka	upstream_gene_variant	MODIFIER	CR44427	intergenic	intergenic	intergenic
A512R19	X	13578364	GA	'G'	CCCGGAAAA	INS	CCCGGAAAA	0.143	strelka	intron_variant	MODIFIER	Tango13	intron	Tango13	FBgn0086674
A512R19	X	16271116	ATG	'A'	TTTAATGTG	INS	TTTAATGTG	0.273	strelka	upstream_gene_variant	MODIFIER	CG12507	intron	Mfe2	FBgn0030731
A512R19	X	17681578	GAGC	'G'	GCAGGAGCA	INS	GCAGGAGCA	0.333	strelka	5_prime_UTR_variant	MODIFIER	chas	exon_2	chas	FBgn0263258
A512R19	X	17878160	AAC	'A'	ACAAAACAC	INS	ACAAAACAC	0.222	strelka	5_prime_UTR_variant	MODIFIER	mnb	5UTR	mnb	FBgn0259168
A512R19	X	18008971	AAC	'A'	TGGCAACAC	INS	TGGCAACAC	0.273	strelka	upstream_gene_variant	MODIFIER	CG12672	intron	Sh	FBgn0003380
A512R19	X	18517293	CA	'C'	GAAACAAAA	INS	GAAACAAAA	0.214	strelka	upstream_gene_variant	MODIFIER	Ggt-1	intron	HisRS	FBgn0027087
A512R19	X	19990202	A	'AC'	GTAGACCCT	INS	AGGGTCTAC	0.15	strelka	intergenic_region	MODIFIER	Nep3-CG17003	intergenic	intergenic	intergenic
A512R19	X	22424552	TG	'T'	GATGTGGGG	INS	GATGTGGGG	0.182	strelka	intergenic_region	MODIFIER	CG41562-CG14621	intergenic	intergenic	intergenic
A512R21	2L	1048167	C	'CCT'	GTGCCCTCA	INS	GTGCCCTCA	0.125	mutect2,strelka	upstream_gene_variant	MODIFIER	IA-2	intergenic	intergenic	intergenic
A512R21	2L	1921011	CA	'C'	GTGGCAAAA	INS	GTGGCAAAA	0.087	strelka	intron_variant	MODIFIER	CG7337	intron	Wdr62	FBgn0031374
A512R21	2L	2895204	T	'TC'	AAGCTCCCC	INS	AAGCTCCCC	0.167	strelka	intron_variant	MODIFIER	lilli	intron	lilli	FBgn0041111
A512R21	2L	3093670	A	'AAGCATTCCCACCAAGTAT'	TGCAAATAA	INS	TTATTTGCA	0.391	strelka	upstream_gene_variant	MODIFIER	toc	intron	toc	FBgn0015600
A512R21	2L	3127669	CTGG	'C'	GGTGCTGGT	INS	GGTGCTGGT	0.154	strelka	disruptive_inframe_deletion	MODERATE	toc	exon_2	toc	FBgn0015600
A512R21	2L	4211078	GA	'G'	ACGCGAAAA	INS	ACGCGAAAA	0.105	strelka	intron_variant	MODIFIER	ft	intron	ft	FBgn0001075
A512R21	2L	4782205	GT	'G'	TTGCGTTTT	INS	TTGCGTTTT	0.2	strelka	intron_variant	MODIFIER	CG15630	intron	CG15630	FBgn0031627
A512R21	2L	4876023	AT	'A'	GCATATTTT	INS	GCATATTTT	0.222	strelka	3_prime_UTR_variant	MODIFIER	pog	3UTR	smog	FBgn0051660
A512R21	2L	5224332	GA	'G'	AAAAGAAAA	INS	AAAAGAAAA	0.132	strelka	intron_variant	MODIFIER	tkv	intron	tkv	FBgn0003716
A512R21	2L	5242090	CA	'C'	GGTGCAAAA	INS	GGTGCAAAA	0.0741	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31914	intron	tkv	FBgn0003716
A512R21	2L	5786118	CT	'C'	ATTACTTTT	INS	ATTACTTTT	0.174	strelka	downstream_gene_variant	MODIFIER	CG31913	intron	CG9171	FBgn0031738
A512R21	2L	7115523	GT	'G'	TGCGGTTTT	INS	TGCGGTTTT	0.0851	strelka	intron_variant	MODIFIER	Pvf3	intron	Pvf3	FBgn0085407
A512R21	2L	7142133	ATG	'A'	CTCCATGTG	INS	CTCCATGTG	0.182	strelka	upstream_gene_variant	MODIFIER	CR44612	intron	Pvf3	FBgn0085407
A512R21	2L	7866090	TTGC	'T'	GGTGTTGCT	INS	GGTGTTGCT	0.195	strelka	disruptive_inframe_deletion	MODERATE	Proc	exon	Proc	FBgn0045038
A512R21	2L	7941416	CTG	'C'	ACTTCTGTG	INS	ACTTCTGTG	0.143	strelka	intron_variant	MODIFIER	Snoo	intron	Snoo	FBgn0085450
A512R21	2L	8221658	GT	'G'	TGTGGTTTT	INS	TGTGGTTTT	0.105	strelka	frameshift_variant	HIGH	Pvr	exon	Pvr	FBgn0032006
A512R21	2L	9601750	TATATGATATG	'T'	AGGGTATAT	INS	AGGGTATAT	0.333	strelka	upstream_gene_variant	MODIFIER	CG4382	intergenic	intergenic	intergenic
A512R21	2L	10036156	GA	'G'	CTTGGAAAA	INS	CTTGGAAAA	0.2	strelka	intron_variant	MODIFIER	obst-B	intron	obst-B	FBgn0027600
A512R21	2L	10143767	GA	'G'	CAGTGAAAA	INS	CAGTGAAAA	0.108	strelka	upstream_gene_variant	MODIFIER	CG4839	intron	CG44153	FBgn0265002
A512R21	2L	10350259	CT	'C'	TTCTCTTTT	INS	TTCTCTTTT	0.3	strelka	downstream_gene_variant	MODIFIER	CG5022	intron	CG34367	FBgn0085396
A512R21	2L	10942462	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.093	strelka	downstream_gene_variant	MODIFIER	CG14072	exon_1	CR44492	FBgn0265685
A512R21	2L	11689602	CCA	'C'	ACACCCACA	INS	ACACCCACA	0.167	strelka	intergenic_region	MODIFIER	CR44481-CG4988	intergenic	intergenic	intergenic
A512R21	2L	12537807	TTGC	'T'	GTTGTTGCT	INS	GTTGTTGCT	0.174	strelka	disruptive_inframe_deletion	MODERATE	bun	exon_3	bun	FBgn0259176
A512R21	2L	12579287	TA	'T'	GATCTAAAA	INS	GATCTAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	CR44596	intergenic	intergenic	intergenic
A512R21	2L	12805376	TTG	'T'	TTTTTTGTT	INS	TTTTTTGTT	0.211	strelka	downstream_gene_variant	MODIFIER	CR43818	intergenic	intergenic	intergenic
A512R21	2L	12959252	A	'ACAATT'	AAACATGGA	INS	TCCATGTTT	0.261	strelka	intergenic_region	MODIFIER	CR44183-CG16800	intergenic	intergenic	intergenic
A512R21	2L	12959255	G	'GTATATTCTTAGTTA'	CATGGAAAA	INS	TTTTCCATG	0.238	strelka	intergenic_region	MODIFIER	CR44183-CG16800	intergenic	intergenic	intergenic
A512R21	2L	13592203	GGCA	'G'	ATGAGGCAG	INS	ATGAGGCAG	0.0889	strelka	downstream_gene_variant	MODIFIER	CG9254	intron	kuz	FBgn0259984
A512R21	2L	16629234	AT	'A'	TAGCATTTT	INS	TAGCATTTT	0.0851	strelka	upstream_gene_variant	MODIFIER	CR44151	intron	CG42389	FBgn0259735
A512R21	2L	18094077	C	'CA'	AAGCCAAAA	INS	AAGCCAAAA	0.152	strelka	upstream_gene_variant	MODIFIER	CG15153	intergenic	intergenic	intergenic
A512R21	2L	18238300	CT	'C'	TTATCTTTT	INS	TTATCTTTT	0.182	strelka	intron_variant	MODIFIER	CG42750	intron	CG42750	FBgn0261804
A512R21	2L	18384908	GT	'G'	CATGGTTTT	INS	CATGGTTTT	0.167	strelka	downstream_gene_variant	MODIFIER	CG34171	intron	Fas3	FBgn0000636
A512R21	2L	18840890	AT	'A'	AAAAATTAA	INS	AAAAATTAA	0.278	strelka	upstream_gene_variant	MODIFIER	CG10600	intron	CG31752	FBgn0051752
A512R21	2L	19635163	CA	'C'	TGGCCAATA	INS	TGGCCAATA	0.129	strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
A512R21	2L	21961377	GCA	'G'	TGAAGCACA	INS	TGAAGCACA	0.0811	strelka	upstream_gene_variant	MODIFIER	CR44804	intergenic	intergenic	intergenic
A512R21	2R	1334631	C	'CA'	GTCCCAAAA	INS	GTCCCAAAA	0.109	strelka	intergenic_region	MODIFIER	CG40191-Yeti	intergenic	intergenic	intergenic
A512R21	2R	1602232	G	'GT'	GTTTGTTTT	INS	AAAACAAAC	0.114	strelka	intergenic_region	MODIFIER	CG17691-CR40068	intergenic	intergenic	intergenic
A512R21	2R	4511723	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.138	strelka	downstream_gene_variant	MODIFIER	CR44100	intergenic	intergenic	intergenic
A512R21	2R	4848331	CAAGTGCCCAAAATGCTGACCAAAGGTCTGCATTCTTTCCGTGCG	'C'	AACACAAGT	INS	AACACAAGT	0.312	strelka	intergenic_region	MODIFIER	CG14464-CG44102	intergenic	intergenic	intergenic
A512R21	2R	5018853	ACATGATAAGTAGG	'A'	TTAGACATG	INS	TTAGACATG	0.222	strelka	intron_variant	MODIFIER	Ir41a	intron	Ir41a	FBgn0040849
A512R21	2R	5641206	T	'TTATTTCCTATATAAATATAGGAAATA'	GAAATTATT	INS	GAAATTATT	0.269	strelka	3_prime_UTR_variant	MODIFIER	CG11665	3UTR	CG11665	FBgn0033028
A512R21	2R	5697054	GT	'G'	ACGCGTTTT	INS	ACGCGTTTT	0.148	strelka	upstream_gene_variant	MODIFIER	CG17337	intergenic	intergenic	intergenic
A512R21	2R	7247334	A	'AG'	CACTAGTAT	INS	ATACTAGTG	0.2	strelka	upstream_gene_variant	MODIFIER	Ady43A	intergenic	intergenic	intergenic
A512R21	2R	7752525	GA	'G'	AAAGGAAAA	INS	AAAGGAAAA	0.1	strelka	intron_variant	MODIFIER	CG30497	intron	CG30497	FBgn0050497
A512R21	2R	11208202	G	'GTT'	TTCGGTTTT	INS	AAAACCGAA	0.3	strelka	intron_variant	MODIFIER	shn	intron	shn	FBgn0003396
A512R21	2R	11218148	GC	'G'	GGCTGCAAA	INS	GGCTGCAAA	0.13	strelka	frameshift_variant	HIGH	CG9084	exon_3	CG9084	FBgn0033582
A512R21	2R	11493540	CCA	'C'	CTGACCACA	INS	CTGACCACA	0.179	strelka	intron_variant	MODIFIER	inv	intron	inv	FBgn0001269
A512R21	2R	11736683	C	'CA'	CGGCCAAAA	INS	CGGCCAAAA	0.108	strelka	intergenic_region	MODIFIER	pyr-ths	intergenic	intergenic	intergenic
A512R21	2R	12052386	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.156	strelka	upstream_gene_variant	MODIFIER	CG30039	intergenic	intergenic	intergenic
A512R21	2R	12402458	A	'AGT'	ATCAAGAAT	INS	ATTCTTGAT	0.3	strelka	upstream_gene_variant	MODIFIER	Cpr49Af	intron	Cpr49Ae	FBgn0033728
A512R21	2R	12402462	T	'TAAGAAAGTGATTATCACCAACTATTA'	AGAATCACT	INS	AGAATCACT	0.31	strelka	upstream_gene_variant	MODIFIER	Cpr49Af	intron	Cpr49Ae	FBgn0033728
A512R21	2R	12588414	GGCA	'G'	TAGAGGCAG	INS	TAGAGGCAG	0.114	strelka	upstream_gene_variant	MODIFIER	CR30055	intron	Sin3A	FBgn0022764
A512R21	2R	12980477	TTTA	'T'	CTTTTTTAT	INS	CTTTTTTAT	0.15	strelka	5_prime_UTR_variant	MODIFIER	Psc	exon_1	Psc	FBgn0005624
A512R21	2R	12980491	TA	'T'	TTATTATTA	INS	TTATTATTA	0	consensus	5_prime_UTR_variant	MODIFIER	Psc	exon_1	Psc	FBgn0005624
A512R21	2R	12980493	TTA	'T'	ATTATTATG	INS	ATTATTATG	0	consensus	5_prime_UTR_variant	MODIFIER	Psc	exon_1	Psc	FBgn0005624
A512R21	2R	13966462	T	'TATAG'	GAGCTTGCT	INS	GAGCTTGCT	0.312	strelka	upstream_gene_variant	MODIFIER	Aats-phe	intron	Cp1	FBgn0013770
A512R21	2R	14117503	C	'CA'	TAAACAAAA	INS	TAAACAAAA	0.214	strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
A512R21	2R	16230668	C	'CA'	CACACAAAA	INS	CACACAAAA	0.143	strelka	5_prime_UTR_variant	MODIFIER	CG15706	intron	CG15701	FBgn0034095
A512R21	2R	16477690	TA	'T'	CAGCTAAAA	INS	CAGCTAAAA	0.138	strelka	intergenic_region	MODIFIER	CheB53b-CG15712	intergenic	intergenic	intergenic
A512R21	2R	16830175	AG	'A'	GCGAAGGGG	INS	GCGAAGGGG	0.192	strelka	upstream_gene_variant	MODIFIER	mir-8	ncRNA	CR43650	FBgn0263659
A512R21	2R	17351474	GA	'G'	GAAAGAGGA	INS	GAAAGAGGA	0.108	strelka	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
A512R21	2R	17821168	GCAA	'G'	AGCAGCAAC	INS	AGCAGCAAC	0.119	mutect2,strelka	disruptive_inframe_deletion	MODERATE	grh	exon_3	grh	FBgn0259211
A512R21	2R	18351879	GTTT	'G'	TGGGGTTTT	INS	TGGGGTTTT	0.643	strelka	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
A512R21	2R	18542089	GA	'G'	CAACGAAAA	INS	CAACGAAAA	0.152	strelka	downstream_gene_variant	MODIFIER	Pepck	ncRNA	CR46271	FBgn0283428
A512R21	2R	18844729	CA	'C'	TGTCCAACG	INS	TGTCCAACG	0.0678	strelka	frameshift_variant	HIGH	CG15099	exon_4	CG15099	FBgn0034400
A512R21	2R	18890536	GGA	'G'	CGCGGGAGA	INS	CGCGGGAGA	0.107	strelka	intron_variant	MODIFIER	sano	intron	sano	FBgn0034408
A512R21	2R	20136552	CT	'C'	ACCCCTTTT	INS	ACCCCTTTT	0.108	strelka	upstream_gene_variant	MODIFIER	CR44635	intergenic	intergenic	intergenic
A512R21	2R	20152022	AGG	'A'	AGTAAGGGA	INS	AGTAAGGGA	0.267	strelka	downstream_gene_variant	MODIFIER	CR45229	intergenic	intergenic	intergenic
A512R21	2R	20913588	GC	'G'	CAGAGCCCT	INS	CAGAGCCCT	0.0976	strelka	upstream_gene_variant	MODIFIER	Rx	intergenic	intergenic	intergenic
A512R21	2R	20958682	TTGC	'T'	ATTGTTGCT	INS	ATTGTTGCT	0.143	strelka	disruptive_inframe_deletion	MODERATE	hbn	exon_2	hbn	FBgn0008636
A512R21	2R	21116155	AC	'A'	CAAAACCAA	INS	CAAAACCAA	0.0702	strelka	upstream_gene_variant	MODIFIER	CG9394	intron	ktub	FBgn0015721
A512R21	2R	21353834	CT	'C'	TCGACTTGT	INS	TCGACTTGT	0.12	strelka	upstream_gene_variant	MODIFIER	CG17974	intergenic	intergenic	intergenic
A512R21	2R	21568367	TGAC	'T'	ACGATGACG	INS	ACGATGACG	0.167	strelka	intron_variant	MODIFIER	CG10440	intron	twz	FBgn0034636
A512R21	2R	22281441	AAC	'A'	CATGAACAC	INS	CATGAACAC	0.0938	strelka	intron_variant	MODIFIER	dve	intron	dve	FBgn0020307
A512R21	2R	22544289	TTC	'T'	GACCTTCCC	INS	GACCTTCCC	0.103	mutect2	intron_variant	MODIFIER	px	intron	px	FBgn0003175
A512R21	2R	22708507	T	'TCAGGTTTCCTCGAA'	ATACTATAT	INS	ATACTATAT	0.15	strelka	upstream_gene_variant	MODIFIER	CG30259	intron	CG30275	FBgn0050275
A512R21	2R	23515645	T	'TTTATACA'	AAATTTGCA	INS	AAATTTGCA	0.292	strelka	upstream_gene_variant	MODIFIER	CG3906	intergenic	intergenic	intergenic
A512R21	2R	23628427	CA	'C'	TGAACAAAA	INS	TGAACAAAA	0.267	strelka	upstream_gene_variant	MODIFIER	retn	intergenic	intergenic	intergenic
A512R21	2R	24306335	C	'CA'	TTAACAAAA	INS	TTAACAAAA	0.129	strelka	intron_variant	MODIFIER	betaTub60D	intron	betaTub60D	FBgn0003888
A512R21	3L	852598	G	'GT'	ACCTGTTTG	INS	CAAACAGGT	0.545	strelka	3_prime_UTR_variant	MODIFIER	CG13890	3UTR	CG13890	FBgn0035169
A512R21	3L	891004	C	'CA'	TCCCCAGAT	INS	TCCCCAGAT	0.744	strelka	splice_acceptor_variant&intron_variant	HIGH	CG32479	intron	Usp10	FBgn0052479
A512R21	3L	915010	ATG	'A'	GTATATGTG	INS	GTATATGTG	0.143	strelka	downstream_gene_variant	MODIFIER	nerfin-1	intron	Glut1	FBgn0264574
A512R21	3L	1431772	A	'AT'	AACTATTTC	INS	GAAATAGTT	0.429	strelka	downstream_gene_variant	MODIFIER	SA-2	intron	Ptp61F	FBgn0267487
A512R21	3L	1431797	CACACGCGACTTT	'C'	TTTTCACAC	INS	TTTTCACAC	0.6	strelka	downstream_gene_variant	MODIFIER	SA-2	intron	Ptp61F	FBgn0267487
A512R21	3L	2732365	AGT	'A'	TGTAAGTGT	INS	TGTAAGTGT	0.115	strelka	intron_variant	MODIFIER	Mrtf	intron	Mrtf	FBgn0052296
A512R21	3L	2903779	C	'CT'	TTGCCTTTT	INS	TTGCCTTTT	0.133	strelka	intron_variant	MODIFIER	Shab	intron	Shab	FBgn0262593
A512R21	3L	3630544	AT	'A'	CAACATTTT	INS	CAACATTTT	0.0976	strelka	intron_variant	MODIFIER	dar1	intron	dar1	FBgn0263239
A512R21	3L	3705227	G	'GC'	TGGGGCATT	INS	AATGCCCCA	0.0952	strelka	upstream_gene_variant	MODIFIER	CR45675	intergenic	intergenic	intergenic
A512R21	3L	3953390	CGT	'C'	GACACGTGT	INS	GACACGTGT	0.261	strelka	upstream_gene_variant	MODIFIER	CG14983	intergenic	intergenic	intergenic
A512R21	3L	4612795	G	'GA'	ACTTGAAAA	INS	TTTTCAAGT	0.13	strelka	intron_variant	MODIFIER	Src64B	intron	Src64B	FBgn0262733
A512R21	3L	4717388	T	'TAAAA'	AAATTAAGA	INS	AAATTAAGA	0.571	strelka	intron_variant	MODIFIER	RhoGEF64C	intron	RhoGEF64C	FBgn0035574
A512R21	3L	4989798	G	'GA'	TTCCGAAAA	INS	TTTTCGGAA	0.143	strelka	downstream_gene_variant	MODIFIER	CG32232	intron	Con	FBgn0005775
A512R21	3L	4999729	GAC	'G'	ATGCGACAC	INS	ATGCGACAC	0.143	strelka	upstream_gene_variant	MODIFIER	CG32232	intron	Con	FBgn0005775
A512R21	3L	5089588	TG	'T'	TCCATGGGG	INS	TCCATGGGG	0.0755	strelka	intergenic_region	MODIFIER	Con-CR34047	intergenic	intergenic	intergenic
A512R21	3L	5817269	C	'CATATAT'	CATGCATAT	INS	CATGCATAT	0.13	strelka	upstream_gene_variant	MODIFIER	mad2	intron	vn	FBgn0003984
A512R21	3L	5916008	GA	'G'	TGCCGAAAA	INS	TGCCGAAAA	0.093	strelka	upstream_gene_variant	MODIFIER	CR45167	intron	CG13288	FBgn0035648
A512R21	3L	6405031	CA	'C'	AACGCAAAA	INS	AACGCAAAA	0.16	strelka	intron_variant	MODIFIER	CG42747	intron	CG42747	FBgn0261801
A512R21	3L	7020306	AAC	'A'	CCACAACAC	INS	CCACAACAC	0.158	strelka	intron_variant	MODIFIER	Mp	intron	Mp	FBgn0260660
A512R21	3L	7321723	AGAG	'A'	AAACAGAGG	INS	AAACAGAGG	0.167	strelka	disruptive_inframe_deletion	MODERATE	RhoGEF4	exon	RhoGEF4	FBgn0035761
A512R21	3L	7747183	AGT	'A'	CGCGAGTGT	INS	CGCGAGTGT	0.136	mutect2,strelka	upstream_gene_variant	MODIFIER	Snmp2	intron	CG32373	FBgn0052373
A512R21	3L	7890176	ACAG	'A'	AACAACAGC	INS	AACAACAGC	0.0976	strelka	disruptive_inframe_deletion	MODERATE	CG32365	exon_3	CG32365	FBgn0052365
A512R21	3L	8294275	TA	'T'	TTGGTAAAA	INS	TTGGTAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	cert	intron	CG7201	FBgn0035865
A512R21	3L	8335390	GT	'G'	ATAAGTTTT	INS	ATAAGTTTT	0.133	strelka	upstream_gene_variant	MODIFIER	Cpr66Cb	intergenic	intergenic	intergenic
A512R21	3L	10490376	ATTAG	'A'	ACCTATTAG	INS	ACCTATTAG	0.15	strelka	upstream_gene_variant	MODIFIER	S-Lap4	intron	Rbfox1	FBgn0052062
A512R21	3L	10492913	TA	'T'	AAAATATAT	INS	AAAATATAT	0.125	strelka	3_prime_UTR_variant	MODIFIER	S-Lap4	3UTR	S-Lap4	FBgn0052064
A512R21	3L	10661509	G	'GT'	TGGAGTTTC	INS	GAAACTCCA	0.375	strelka	5_prime_UTR_variant	MODIFIER	CG8003	5UTR	CG8003	FBgn0036096
A512R21	3L	12111438	CTGT	'C'	GTTCCTGTT	INS	GTTCCTGTT	0.0833	strelka	upstream_gene_variant	MODIFIER	l(3)j2D3	intergenic	intergenic	intergenic
A512R21	3L	12702524	C	'CATAAAACAAAAAGTGATAT'	CAAACATAA	INS	CAAACATAA	0.455	strelka	intron_variant	MODIFIER	mirr	intron	mirr	FBgn0014343
A512R21	3L	12892581	CGA	'C'	AGAGCGAGA	INS	AGAGCGAGA	0.107	strelka	upstream_gene_variant	MODIFIER	CR45748	intergenic	intergenic	intergenic
A512R21	3L	13041718	CA	'C'	CTCGCAAAA	INS	CTCGCAAAA	0.114	strelka	upstream_gene_variant	MODIFIER	RpS4	intergenic	intergenic	intergenic
A512R21	3L	13205370	T	'TCATATTTTGC'	TACCTCCAT	INS	TACCTCCAT	0.4	strelka	downstream_gene_variant	MODIFIER	CR45096	intergenic	intergenic	intergenic
A512R21	3L	13431800	C	'CA'	TTGACAAAA	INS	TTGACAAAA	0.138	strelka	upstream_gene_variant	MODIFIER	tRNA:V4:70BCb	intron	CG10713	FBgn0036360
A512R21	3L	14323738	CT	'C'	GTTGCTTTT	INS	GTTGCTTTT	0.121	strelka	intron_variant	MODIFIER	fz	ncRNA	CR45025	FBgn0266383
A512R21	3L	15519226	TA	'T'	TCTATAAAA	INS	TCTATAAAA	0.118	strelka	upstream_gene_variant	MODIFIER	CG13454	intron	mex1	FBgn0004228
A512R21	3L	15831329	TCA	'T'	GTAATCACA	INS	GTAATCACA	0.107	strelka	3_prime_UTR_variant	MODIFIER	dbo	3UTR	dbo	FBgn0040230
A512R21	3L	16434922	GT	'G'	ATGTGTTTT	INS	ATGTGTTTT	0.152	strelka	intron_variant	MODIFIER	CG33158	intron	dsx-c73A	FBgn0261799
A512R21	3L	17590638	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.19	strelka	intron_variant	MODIFIER	Eip74EF	intron	Eip74EF	FBgn0000567
A512R21	3L	21479573	C	'CA'	CAGCCAAAA	INS	CAGCCAAAA	0.128	strelka	upstream_gene_variant	MODIFIER	croc	intergenic	intergenic	intergenic
A512R21	3L	21852348	TC	'T'	TACTTCCCT	INS	TACTTCCCT	0.5	strelka	downstream_gene_variant	MODIFIER	tRNA:CR32449	intron	mub	FBgn0262737
A512R21	3L	23174531	CA	'C'	CAAACAAAA	INS	CAAACAAAA	0.1	strelka	frameshift_variant	HIGH	CG34031	exon_1	CG34031	FBgn0054031
A512R21	3L	24180924	GT	'G'	ATTTGTTTT	INS	ATTTGTTTT	0.156	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A512R21	3L	24684138	CA	'C'	GTGGCAAAA	INS	GTGGCAAAA	0.158	strelka	intergenic_region	MODIFIER	CR41597-scro	intergenic	intergenic	intergenic
A512R21	3L	25708770	CA	'C'	CAAACATTT	INS	CAAACATTT	0.16	strelka	non_coding_transcript_exon_variant	MODIFIER	CR45180	exon_2	CR45180	FBgn0266690
A512R21	3L	26751741	CGCTTGGCCG	'C'	GTCCCGCTT	INS	GTCCCGCTT	0.128	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
A512R21	3L	27274576	AT	'A'	CCAGATTTT	INS	CCAGATTTT	0.138	strelka	upstream_gene_variant	MODIFIER	Dbp80	intergenic	intergenic	intergenic
A512R21	3L	27290079	CA	'C'	TATGCAAAA	INS	TATGCAAAA	0.121	strelka	intron_variant	MODIFIER	Dbp80	intron	Dbp80	FBgn0024804
A512R21	3R	10571	CG	'C'	GGACCGAGT	INS	GGACCGAGT	0.132	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A512R21	3R	22648	C	'CG'	GGACCAGTA	INS	GGACCAGTA	0.268	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A512R21	3R	174004	T	'TC'	GTACTGGTC	INS	GTACTGGTC	0.219	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A512R21	3R	805978	CTGGACTTACA	'C'	ACTACTGGA	INS	ACTACTGGA	0.176	strelka	intergenic_region	MODIFIER	CR41571-CG45784	intron	Myo81F	FBgn0267431
A512R21	3R	806008	A	'AT'	TATTACATG	INS	CATGTAATA	0.146	strelka	intergenic_region	MODIFIER	CR41571-CG45784	intron	Myo81F	FBgn0267431
A512R21	3R	3800986	GT	'G'	TTTCGTTTT	INS	TTTCGTTTT	0.146	strelka	intergenic_region	MODIFIER	CG41128-CG41099	intergenic	intergenic	intergenic
A512R21	3R	3813840	CT	'C'	TTCTCTTTT	INS	TTCTCTTTT	0.192	strelka	intergenic_region	MODIFIER	CG41128-CG41099	intergenic	intergenic	intergenic
A512R21	3R	5322376	GT	'G'	TTTAGTTTT	INS	TTTAGTTTT	0.135	strelka	intron_variant	MODIFIER	mtd	intron	mtd	FBgn0013576
A512R21	3R	5520008	GGT	'G'	TAAGGGTGT	INS	TAAGGGTGT	0.111	strelka	downstream_gene_variant	MODIFIER	CR43845	intron	Itp-r83A	FBgn0010051
A512R21	3R	5802762	G	'GA'	AAAAGAAAA	INS	TTTTCTTTT	0.182	strelka	5_prime_UTR_variant	MODIFIER	CG11000	5UTR	CG11000	FBgn0263353
A512R21	3R	6057532	C	'CT'	AAGTCTTTT	INS	AAGTCTTTT	0.138	strelka	5_prime_UTR_variant	MODIFIER	CG15580	5UTR	CG15580	FBgn0037398
A512R21	3R	6588977	G	'GA'	CGATGAAAA	INS	TTTTCATCG	0.174	strelka	intron_variant	MODIFIER	dpr11	intron	dpr11	FBgn0053202
A512R21	3R	6783150	C	'CA'	AAACCCAAA	INS	AAACCCAAA	0.111	strelka	upstream_gene_variant	MODIFIER	CR43435	intergenic	intergenic	intergenic
A512R21	3R	8373702	GGCT	'G'	CGGCGGCTG	INS	CGGCGGCTG	0.135	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
A512R21	3R	9254593	AACC	'A'	GACCAACCC	INS	GACCAACCC	0.114	strelka	upstream_gene_variant	MODIFIER	CG16734	exon_1	CR16735	FBgn0037666
A512R21	3R	9560158	CCA	'C'	ATAACCACA	INS	ATAACCACA	0.15	strelka	upstream_gene_variant	MODIFIER	CG9386	intron	MBD-like	FBgn0027950
A512R21	3R	9949877	CTG	'C'	TACACTGTG	INS	TACACTGTG	0.154	strelka	downstream_gene_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
A512R21	3R	10330943	A	'AT'	TGTGATTTT	INS	AAAATCACA	0.129	strelka	upstream_gene_variant	MODIFIER	CG12818	intron	Bruce	FBgn0266717
A512R21	3R	10617124	GA	'G'	ATACGAAAA	INS	ATACGAAAA	0.109	strelka	upstream_gene_variant	MODIFIER	hth	intron	hth	FBgn0001235
A512R21	3R	11016327	CT	'C'	TTCTCTTTT	INS	TTCTCTTTT	0.167	strelka	intron_variant	MODIFIER	CG34114	intron	CG34114	FBgn0083950
A512R21	3R	11265635	CTG	'C'	CTGTCTGTG	INS	CTGTCTGTG	0.195	strelka	downstream_gene_variant	MODIFIER	CR31386	intergenic	intergenic	intergenic
A512R21	3R	11717010	CA	'C'	CACTCAAAA	INS	CACTCAAAA	0.147	strelka	upstream_gene_variant	MODIFIER	CG12594	intergenic	intergenic	intergenic
A512R21	3R	12838316	AT	'A'	AGCCATTTT	INS	AGCCATTTT	0.121	strelka	downstream_gene_variant	MODIFIER	beat-Va	intergenic	intergenic	intergenic
A512R21	3R	13066809	G	'GT'	CAGTGTTTT	INS	AAAACACTG	0.114	strelka	intron_variant	MODIFIER	sim	intron	sim	FBgn0004666
A512R21	3R	13913640	G	'GT'	ACCAGTTTT	INS	AAAACTGGT	0.167	strelka	intergenic_region	MODIFIER	ems-Art9	intergenic	intergenic	intergenic
A512R21	3R	14880227	CA	'C'	CTGCCAAAA	INS	CTGCCAAAA	0.105	strelka	5_prime_UTR_variant	MODIFIER	CG3631	5UTR	CG3631	FBgn0038268
A512R21	3R	15080564	GT	'G'	GTTTGTTTT	INS	GTTTGTTTT	0.162	strelka	3_prime_UTR_variant	MODIFIER	CG6966	3UTR	CG6966	FBgn0038286
A512R21	3R	15112413	GGAC	'G'	GTCTGGACA	INS	GTCTGGACA	0	consensus	intron_variant	MODIFIER	CG42788	intron	CG42788	FBgn0261859
A512R21	3R	15233238	GT	'G'	AATAGTGAC	INS	AATAGTGAC	0.1	strelka	frameshift_variant	HIGH	tefu	exon_26	tefu	FBgn0045035
A512R21	3R	15617079	G	'GCCACGATATTT'	GATGGCCTT	INS	AAGGCCATC	0.192	strelka	intergenic_region	MODIFIER	AOX4-CG43335	intergenic	intergenic	intergenic
A512R21	3R	17289908	ACCCCTAAGCTGTGT	'A'	GTATACCCC	INS	GTATACCCC	0.538	strelka	upstream_gene_variant	MODIFIER	CR43489	intergenic	intergenic	intergenic
A512R21	3R	17731269	CG	'C'	CGTCCGGTA	INS	CGTCCGGTA	0.222	strelka	upstream_gene_variant	MODIFIER	CG14321	intron	Lgr1	FBgn0016650
A512R21	3R	20424529	A	'AGGCAGG'	CATGAGGCA	INS	TGCCTCATG	0.188	strelka	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
A512R21	3R	20947748	C	'CGTCTTCCAAAGATATGTTGGCTA'	ACATCGTGA	INS	ACATCGTGA	0.5	strelka	upstream_gene_variant	MODIFIER	CG31191	intergenic	intergenic	intergenic
A512R21	3R	21936120	G	'GGT'	AGGGGGTGT	INS	ACACCCCCT	0.154	strelka	intergenic_region	MODIFIER	CG17843-Eip93F	intergenic	intergenic	intergenic
A512R21	3R	21936668	GT	'G'	AAAGGTTTT	INS	AAAGGTTTT	0.111	strelka	intergenic_region	MODIFIER	CG17843-Eip93F	intergenic	intergenic	intergenic
A512R21	3R	22597918	C	'CTGTGTGTGTGTG'	TCAACTGTG	INS	TCAACTGTG	0.389	strelka	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
A512R21	3R	22633092	GCAA	'G'	GAAAGCAAC	INS	GAAAGCAAC	0.136	strelka	upstream_gene_variant	MODIFIER	loco	intron	loco	FBgn0020278
A512R21	3R	22656009	G	'GGGTGTTTGGGTGGTTGGGTGGTTGGGT'	GGTTGGGTG	INS	CACCCAACC	0.179	strelka	intron_variant	MODIFIER	wake	intron	wake	FBgn0266418
A512R21	3R	22733149	GCT	'G'	TAAGGCTCT	INS	TAAGGCTCT	0.0889	strelka	downstream_gene_variant	MODIFIER	CG45049	intron	Takl2	FBgn0039015
A512R21	3R	23332062	CA	'C'	CGCCCAAAA	INS	CGCCCAAAA	0.125	strelka	downstream_gene_variant	MODIFIER	CR46090	intron	pnt	FBgn0003118
A512R21	3R	23735693	GA	'G'	GACCGAAAA	INS	GACCGAAAA	0.121	strelka	upstream_gene_variant	MODIFIER	Rpn9	intron	Hmgcr	FBgn0263782
A512R21	3R	24408186	GA	'G'	AACCGAAAA	INS	AACCGAAAA	0.0851	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
A512R21	3R	25366874	CT	'C'	ATTCCTTTT	INS	ATTCCTTTT	0.235	strelka	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
A512R21	3R	25927828	CT	'C'	TTGCCTTTT	INS	TTGCCTTTT	0.114	strelka	upstream_gene_variant	MODIFIER	CR34024	intron	CCAP-R	FBgn0039396
A512R21	3R	25975498	TA	'T'	CCCCTAAAA	INS	CCCCTAAAA	0.16	strelka	intron_variant	MODIFIER	CG42261	intron	CG42261	FBgn0259146
A512R21	3R	26353681	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.0976	strelka	upstream_gene_variant	MODIFIER	CG33970	intron	CG33970	FBgn0053970
A512R21	3R	26893770	GT	'G'	AGAAGTTGC	INS	AGAAGTTGC	0.087	strelka	intron_variant	MODIFIER	T48	intron	T48	FBgn0004359
A512R21	3R	26995361	GA	'G'	AGCAGACCT	INS	AGCAGACCT	0.111	strelka	frameshift_variant	HIGH	TwdlC	exon	TwdlC	FBgn0039469
A512R21	3R	27302933	TGA	'T'	TAGTTGAAA	INS	TAGTTGAAA	0.321	strelka	intron_variant	MODIFIER	CG3339	intron	CG3339	FBgn0039510
A512R21	3R	27806018	C	'CT'	TCTGCTTTT	INS	TCTGCTTTT	0.129	strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
A512R21	3R	30413966	C	'CA'	TGGCCAAAA	INS	TGGCCAAAA	0.267	strelka	downstream_gene_variant	MODIFIER	CG2217	intergenic	intergenic	intergenic
A512R21	3R	30968221	T	'TG'	TGTTTTTTT	INS	TGTTTTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	Ctr1C	intergenic	intergenic	intergenic
A512R21	3R	31450393	T	'TC'	CGATTCCCT	INS	CGATTCCCT	0.115	strelka	intron_variant	MODIFIER	Gprk2	intron	Gprk2	FBgn0261988
A512R21	3R	31921174	GT	'G'	TGGCGTTCA	INS	TGGCGTTCA	0.154	strelka	intron_variant	MODIFIER	heph	intron	heph	FBgn0011224
A512R21	4	146765	G	'GAAAA'	AAAAGAAAA	INS	TTTTCTTTT	0.323	strelka	upstream_gene_variant	MODIFIER	CG32006	intergenic	intergenic	intergenic
A512R21	4	1306555	TTG	'T'	CCCTTTGTG	INS	CCCTTTGTG	0.15	strelka	intergenic_region	MODIFIER	Caps-CHR_END	intergenic	intergenic	intergenic
A512R21	X	745318	GA	'G'	AACCGAGAG	INS	AACCGAGAG	0.176	strelka	frameshift_variant	HIGH	sdk	exon_11	sdk	FBgn0021764
A512R21	X	1973914	TCA	'T'	AGACTCACA	INS	AGACTCACA	0.25	strelka	intron_variant	MODIFIER	Hr4	intron	Hr4	FBgn0264562
A512R21	X	2136380	CGT	'C'	GTCTCGTGT	INS	GTCTCGTGT	0.185	strelka	5_prime_UTR_variant	MODIFIER	ph-p	5UTR	ph-p	FBgn0004861
A512R21	X	2929673	TTC	'T'	CTCTTTCTC	INS	CTCTTTCTC	0.158	strelka	upstream_gene_variant	MODIFIER	CG14424	intron	kirre	FBgn0028369
A512R21	X	4901881	GCA	'G'	ATTTGCACA	INS	ATTTGCACA	0.182	strelka	intron_variant	MODIFIER	CG42594	intron	CG42594	FBgn0260971
A512R21	X	5044514	GA	'G'	GATCGAAAA	INS	GATCGAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	ovo	ncRNA	CR44833	FBgn0266096
A512R21	X	5208606	GC	'G'	ATTAGCCGG	INS	ATTAGCCGG	0.0976	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A512R21	X	5216341	GA	'G'	AAATGAAAA	INS	AAATGAAAA	0.138	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A512R21	X	5332634	CA	'C'	AGAACAAAA	INS	AGAACAAAA	0.16	strelka	upstream_gene_variant	MODIFIER	CG3309	intron	CanB	FBgn0010014
A512R21	X	6591057	CGCA	'C'	CAATCGCAG	INS	CAATCGCAG	0.143	strelka	downstream_gene_variant	MODIFIER	CG34417	intron	Pat1	FBgn0029878
A512R21	X	7394385	TA	'T'	TTGTTAGCA	INS	TTGTTAGCA	0.176	strelka	intron_variant	MODIFIER	CR44357	intron	CG1677	FBgn0029941
A512R21	X	7447596	GT	'G'	TTTAGTTTT	INS	TTTAGTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	CR43199	exon_1	CR45533	FBgn0267089
A512R21	X	8853928	GA	'G'	CGATGAAAA	INS	CGATGAAAA	0.3	strelka	5_prime_UTR_variant	MODIFIER	CG12075	exon_1	CG12075	FBgn0030065
A512R21	X	9486340	ACAG	'A'	AACAACAGC	INS	AACAACAGC	0.158	mutect2	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
A512R21	X	10558653	GT	'G'	GCTAGTTTT	INS	GCTAGTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	spri	intron	spri	FBgn0085443
A512R21	X	12191077	G	'GATGTGA'	TGTGGATGT	INS	ACATCCACA	0.222	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
A512R21	X	12285747	TGCA	'T'	CTGCTGCAG	INS	CTGCTGCAG	0.231	strelka	disruptive_inframe_deletion	MODERATE	Ten-a	exon_4	Ten-a	FBgn0267001
A512R21	X	12608989	TCA	'T'	CCGCTCACA	INS	CCGCTCACA	0.167	strelka	3_prime_UTR_variant	MODIFIER	Sec16	exon_13	Sec16	FBgn0052654
A512R21	X	13863210	TGA	'T'	CACTTGAGA	INS	CACTTGAGA	0.143	strelka	3_prime_UTR_variant	MODIFIER	mamo	3UTR	mamo	FBgn0267033
A512R21	X	15494714	T	'TA'	TTCCTAAAA	INS	TTCCTAAAA	0.364	strelka	upstream_gene_variant	MODIFIER	Gmap	intron	Gmap	FBgn0027287
A512R21	X	15593014	CT	'C'	CCGCCTTTT	INS	CCGCCTTTT	0.148	strelka	5_prime_UTR_variant	MODIFIER	CG9220	exon_1	CG9220	FBgn0030662
A512R21	X	16688728	TC	'T'	TACCTCCCC	INS	TACCTCCCC	0.333	strelka	upstream_gene_variant	MODIFIER	Axs	intron	Sep4	FBgn0259923
A512R21	X	18993648	CA	'C'	CGAACAAAA	INS	CGAACAAAA	0.167	strelka	intron_variant	MODIFIER	CG43759	intron	CG43759	FBgn0264090
A512R21	X	19486670	GGCT	'G'	GAGTGGCTG	INS	GAGTGGCTG	0.2	strelka	disruptive_inframe_deletion	MODERATE	pcm	exon_9	pcm	FBgn0020261
A512R21	X	19873438	CT	'C'	GAGGCTTTT	INS	GAGGCTTTT	0.185	strelka	upstream_gene_variant	MODIFIER	Hers	intron	Hers	FBgn0052529
A512R21	X	21001223	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.267	strelka	intergenic_region	MODIFIER	CG11666-r-cup	intergenic	intergenic	intergenic
A512R21	X	21009246	AGT	'A'	TGTAAGTGT	INS	TGTAAGTGT	0.176	strelka	intergenic_region	MODIFIER	CG11666-r-cup	intergenic	intergenic	intergenic
A512R21	X	21204705	TG	'T'	TATTTGGGG	INS	TATTTGGGG	0.25	strelka	upstream_gene_variant	MODIFIER	CG1724	intergenic	intergenic	intergenic
A512R21	X	21660607	TA	'T'	CTGGTAAAA	INS	CTGGTAAAA	0.12	strelka	intron_variant	MODIFIER	flam	ncRNA	flam	FBgn0267704
A512R21	Y	71032	G	'GT'	TGTCGTTTT	INS	AAAACGACA	0.381	strelka	intron_variant	MODIFIER	kl-5	intron	kl-5	FBgn0267433
A512R21	Y	71076	CA	'C'	TCTGCAATT	INS	TCTGCAATT	0.286	strelka	intron_variant	MODIFIER	kl-5	intron	kl-5	FBgn0267433
A512R23	2L	1347353	C	'CAAATTGGA'	TATACAAAT	INS	TATACAAAT	0.13	strelka	upstream_gene_variant	MODIFIER	CG33922	intergenic	intergenic	intergenic
A512R23	2L	1628164	TGGGGAGCCAAGAAGAGAAGAAGAG	'T'	TAAATGGGG	INS	TAAATGGGG	0.273	strelka	upstream_gene_variant	MODIFIER	CR44603	intergenic	intergenic	intergenic
A512R23	2L	3118418	AT	'A'	TAATATTTT	INS	TAATATTTT	0.154	strelka	intron_variant	MODIFIER	toc	intron	toc	FBgn0015600
A512R23	2L	3809646	TA	'T'	GAACTAAAA	INS	GAACTAAAA	0.0851	strelka	3_prime_UTR_variant	MODIFIER	Reph	3UTR	Reph	FBgn0021800
A512R23	2L	4161476	A	'AAC'	AAGGAAAAA	INS	TTTTTCCTT	0.0952	strelka	downstream_gene_variant	MODIFIER	Or24a	intergenic	intergenic	intergenic
A512R23	2L	9210540	A	'AT'	AAACATGTA	INS	TACATGTTT	0.35	strelka	intron_variant	MODIFIER	tai	intron	tai	FBgn0041092
A512R23	2L	11168447	A	'ATTTACGAAATTTTATTTAATCTGCCTGTAATTGATCTCTTAT'	TAAAATTTA	INS	TAAATTTTA	0.13	strelka	upstream_gene_variant	MODIFIER	Ca-beta	intron	Ca-beta	FBgn0259822
A512R23	2L	11903339	T	'TAA'	CGCATATAT	INS	CGCATATAT	0.0606	strelka	intron_variant	MODIFIER	Pde1c	intron	Pde1c	FBgn0264815
A512R23	2L	12385781	AGTGTT	'A'	AAATAGTGT	INS	AAATAGTGT	0.188	strelka	intron_variant	MODIFIER	bru-2	intron	bru2	FBgn0262475
A512R23	2L	13069500	A	'AC'	ACACAAAAA	INS	TTTTTGTGT	0.0755	strelka	intergenic_region	MODIFIER	CG9932-CR44197	intergenic	intergenic	intergenic
A512R23	2L	13394298	G	'GT'	GACAGTTTT	INS	AAAACTGTC	0.0946	strelka	3_prime_UTR_variant	MODIFIER	RpL24	3UTR	RpL24	FBgn0032518
A512R23	2L	13645448	GT	'G'	GCACGTTTT	INS	GCACGTTTT	0.0926	strelka	upstream_gene_variant	MODIFIER	ics	intergenic	intergenic	intergenic
A512R23	2L	14469074	TGTAATCGAGTGAGA	'T'	AGGTTGTAA	INS	AGGTTGTAA	0.087	strelka	intergenic_region	MODIFIER	CR44730-CR44731	intergenic	intergenic	intergenic
A512R23	2L	14712508	GA	'G'	ATTGGAAGA	INS	ATTGGAAGA	0.0851	strelka	5_prime_UTR_variant	MODIFIER	CG15282	exon_1	CG15282	FBgn0028855
A512R23	2L	16582537	GT	'G'	TAGCGTTTT	INS	TAGCGTTTT	0.147	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
A512R23	2L	17204062	GA	'G'	ATATGAAAA	INS	ATATGAAAA	0.098	strelka	intron_variant	MODIFIER	beat-IIIc	intron	beat-IIIc	FBgn0032629
A512R23	2L	17619442	G	'GT'	TTCCGTTTT	INS	AAAACGGAA	0.0633	strelka	intergenic_region	MODIFIER	CR44412-CR44413	intergenic	intergenic	intergenic
A512R23	2L	19411331	G	'GCTATTCTAT'	ACATGTCAT	INS	ATGACATGT	0.25	strelka	upstream_gene_variant	MODIFIER	Pax	intron	Pax	FBgn0041789
A512R23	2L	19411333	C	'CTTAA'	ATGTCATGT	INS	ATGTCATGT	0.226	strelka	upstream_gene_variant	MODIFIER	Pax	intron	Pax	FBgn0041789
A512R23	2L	19411336	G	'GGTA'	TCATGTCAG	INS	CTGACATGA	0.219	strelka	upstream_gene_variant	MODIFIER	Pax	intron	Pax	FBgn0041789
A512R23	2L	19859792	T	'TCAACAGGTATAAAGCAACAGGGGCC'	TTTATACCT	INS	TTTATACCT	0.316	strelka	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
A512R23	2R	504091	TA	'T'	CATTTAAAA	INS	CATTTAAAA	0.0694	strelka	intron_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
A512R23	2R	597691	GT	'G'	ACCTGTTTT	INS	ACCTGTTTT	0.0727	strelka	intron_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
A512R23	2R	1074980	CT	'C'	GCTTCTTTT	INS	GCTTCTTTT	0.139	strelka	upstream_gene_variant	MODIFIER	CR41257	intron	rl	FBgn0003256
A512R23	2R	5301947	G	'GC'	CTCTGCCCA	INS	TGGGCAGAG	0.098	strelka	intergenic_region	MODIFIER	d4-sxc	intergenic	intergenic	intergenic
A512R23	2R	6148034	CTA	'C'	AAGCCTATA	INS	AAGCCTATA	0.121	strelka	downstream_gene_variant	MODIFIER	tRNA:N5:42Ah	intron	EcR	FBgn0000546
A512R23	2R	10607135	AT	'A'	TCCGATTTT	INS	TCCGATTTT	0.127	strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
A512R23	2R	10751875	CAT	'C'	TATGCATAT	INS	TATGCATAT	0.154	strelka	intron_variant	MODIFIER	CG33144	intron	CG33144	FBgn0053144
A512R23	2R	13582263	TG	'T'	TTTTTGTTT	INS	TTTTTGTTT	0.0278	mutect2	downstream_gene_variant	MODIFIER	CR44365	intron	CG45088	FBgn0266489
A512R23	2R	13937411	GAACCCAC	'G'	ATGGGAACC	INS	ATGGGAACC	0.138	strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
A512R23	2R	14044302	GCA	'G'	TCAGGCACA	INS	TCAGGCACA	0.167	strelka	intron_variant	MODIFIER	mam	intron	mam	FBgn0002643
A512R23	2R	15145157	GT	'G'	TAATGTAAA	INS	TAATGTAAA	0.0645	strelka	upstream_gene_variant	MODIFIER	CG7544	intron	Rpb12	FBgn0262954
A512R23	2R	16611929	GTA	'G'	CTTTGTATA	INS	CTTTGTATA	0.15	strelka	5_prime_UTR_variant	MODIFIER	CG5065	exon_1	CG5065	FBgn0034145
A512R23	2R	16730006	CA	'C'	CCTGCAAAA	INS	CCTGCAAAA	0.208	strelka	intron_variant	MODIFIER	CG30463	intron	CG30463	FBgn0050463
A512R23	2R	17254443	GT	'G'	TTCAGTTTT	INS	TTCAGTTTT	0.114	strelka	upstream_gene_variant	MODIFIER	CG43272	exon_3	CR43660	FBgn0263708
A512R23	2R	17868216	C	'CTT'	AAATCTTTT	INS	AAATCTTTT	0.0645	strelka	upstream_gene_variant	MODIFIER	thr	intron	Mapmodulin	FBgn0034282
A512R23	2R	18160913	CT	'C'	CAAACTTTT	INS	CAAACTTTT	0.0725	strelka	5_prime_UTR_variant	MODIFIER	CG10915	5UTR	CG10915	FBgn0034308
A512R23	2R	21194966	GCA	'G'	CGGTGCACA	INS	CGGTGCACA	0.105	strelka	downstream_gene_variant	MODIFIER	tud	intron	Lapsyn	FBgn0034602
A512R23	2R	21782165	G	'GT'	CCCAGTTTT	INS	AAAACTGGG	0.0606	strelka	intergenic_region	MODIFIER	CG4021-lox2	intergenic	intergenic	intergenic
A512R23	2R	21904412	A	'ATTTTATTTAT'	GGTAATTTT	INS	AAAATTACC	0.387	strelka	intron_variant	MODIFIER	Fili	intron	Fili	FBgn0085397
A512R23	2R	22500793	AGCT	'A'	TTAAAGCTG	INS	TTAAAGCTG	0.0494	mutect2	intron_variant	MODIFIER	px	intron	px	FBgn0003175
A512R23	2R	22739101	C	'CT'	AACCCTTTT	INS	AACCCTTTT	0.103	strelka	upstream_gene_variant	MODIFIER	jbug	intron	jbug	FBgn0028371
A512R23	2R	23570455	GTGCTTCTTTCTTATTCGTTATTTA	'G'	GTGTGTGCT	INS	GTGTGTGCT	0.475	mutect2	intron_variant	MODIFIER	apt	intron	apt	FBgn0015903
A512R23	3L	128350	G	'GA'	AAGAGAAAA	INS	TTTTCTCTT	0.133	strelka	upstream_gene_variant	MODIFIER	CR45401	intergenic	intergenic	intergenic
A512R23	3L	468144	T	'TG'	TTGTTGATT	INS	TTGTTGATT	0.0562	strelka	intron_variant	MODIFIER	klar	intron	klar	FBgn0001316
A512R23	3L	2832038	T	'TAAA'	CAACTAAAA	INS	CAACTAAAA	0.0208	mutect2	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
A512R23	3L	5160970	GT	'G'	GATAGTTTT	INS	GATAGTTTT	0.0769	strelka	3_prime_UTR_variant	MODIFIER	shep	3UTR	shep	FBgn0052423
A512R23	3L	5208101	GCA	'G'	AAACGCACA	INS	AAACGCACA	0.116	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
A512R23	3L	5950383	G	'GT'	ACGTGTTTT	INS	AAAACACGT	0.145	strelka	5_prime_UTR_variant	MODIFIER	CG33993	exon_1	CG33993	FBgn0053993
A512R23	3L	6579036	G	'GAATTGCTTTCATCTTTT'	CTTTGAATT	INS	AATTCAAAG	0.3	strelka	intron_variant	MODIFIER	CG18769	intron	jv	FBgn0263973
A512R23	3L	6579057	T	'TTTGTAAATGAACAG'	TCTTTCAGA	INS	TCTTTCAGA	0.231	strelka	intron_variant	MODIFIER	CG18769	intron	jv	FBgn0263973
A512R23	3L	6579059	A	'AAAGC'	TTTCAGAAA	INS	TTTCTGAAA	0.231	strelka	intron_variant	MODIFIER	CG18769	intron	jv	FBgn0263973
A512R23	3L	6711067	G	'GTA'	GCAGGTATA	INS	TATACCTGC	0.176	strelka	downstream_gene_variant	MODIFIER	CG8519	intergenic	intergenic	intergenic
A512R23	3L	6900790	AT	'A'	TAGGATGTT	INS	TAGGATGTT	0.0889	strelka	intergenic_region	MODIFIER	CR45416-Prat2	intergenic	intergenic	intergenic
A512R23	3L	6925967	GCA	'G'	ACGCGCACA	INS	ACGCGCACA	0.069	strelka	intergenic_region	MODIFIER	Prat2-CG45413	intergenic	intergenic	intergenic
A512R23	3L	7318714	TAC	'T'	TGGGTACAC	INS	TGGGTACAC	0.0769	strelka	upstream_gene_variant	MODIFIER	CG8607	intergenic	intergenic	intergenic
A512R23	3L	8148913	C	'CA'	AAAACAATA	INS	AAAACAATA	0.0597	strelka	intron_variant	MODIFIER	CG13676	intron	CG13676	FBgn0035844
A512R23	3L	8258161	G	'GT'	AACAGTTTT	INS	AAAACTGTT	0.174	strelka	intron_variant	MODIFIER	Dscam4	intron	Dscam4	FBgn0263219
A512R23	3L	8750580	AG	'A'	AAAAAGATG	INS	AAAAAGATG	0.0678	strelka	upstream_gene_variant	MODIFIER	CG13306	intergenic	intergenic	intergenic
A512R23	3L	9307984	GA	'G'	ATCCGAAAA	INS	ATCCGAAAA	0.111	strelka	intergenic_region	MODIFIER	GluRIB-PGRP-LA	intergenic	intergenic	intergenic
A512R23	3L	10472714	AAAAAAGCG	'A'	AGGGAAAAA	INS	AGGGAAAAA	0.0889	mutect2	downstream_gene_variant	MODIFIER	S-Lap3	intergenic	intergenic	intergenic
A512R23	3L	10678661	TAGAGGACGAC	'T'	TTTATAGAG	INS	TTTATAGAG	0.278	strelka	intron_variant	MODIFIER	simj	intron	simj	FBgn0010762
A512R23	3L	11534862	AT	'A'	TTCTATTTT	INS	TTCTATTTT	0.0833	strelka	upstream_gene_variant	MODIFIER	Mob2	intron	Mob2	FBgn0259481
A512R23	3L	11846234	A	'AAGTTTTTCTTATCGGCTTCTGC'	ATTTACACC	INS	GGTGTAAAT	0.211	strelka	downstream_gene_variant	MODIFIER	CG12521	intergenic	intergenic	intergenic
A512R23	3L	12838701	A	'AT'	TGACATTTT	INS	AAAATGTCA	0.1	strelka	intron_variant	MODIFIER	CG10960	intron	CG10960	FBgn0036316
A512R23	3L	13619029	TTG	'T'	TTTGTTGTG	INS	TTTGTTGTG	0.0857	strelka	upstream_gene_variant	MODIFIER	mir-289	intron	bru3	FBgn0264001
A512R23	3L	13902891	G	'GCC'	TGTTGACAA	INS	TTGTCAACA	0.0667	strelka	5_prime_UTR_variant	MODIFIER	dysc	exon_1	dysc	FBgn0264006
A512R23	3L	15411162	CA	'C'	CACGCAAAA	INS	CACGCAAAA	0.119	strelka	downstream_gene_variant	MODIFIER	CG33259	intergenic	intergenic	intergenic
A512R23	3L	17692909	GT	'G'	GGGCGTTTT	INS	GGGCGTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	CR45976	intron	Ccn	FBgn0052183
A512R23	3L	19161421	GT	'G'	TTGTGTTTT	INS	TTGTGTTTT	0.146	strelka	intron_variant	MODIFIER	fz2	intron	fz2	FBgn0016797
A512R23	3L	21042660	A	'AT'	CTAAAGCTG	INS	CAGCTTTAG	0.143	strelka	intron_variant	MODIFIER	siz	intron	siz	FBgn0026179
A512R23	3L	25878221	TA	'T'	GCGATAAAA	INS	GCGATAAAA	0.107	strelka	intron_variant	MODIFIER	CG40178	intron	CG40178	FBgn0058178
A512R23	3L	27796723	TACA	'T'	GTGTTACAT	INS	GTGTTACAT	0.15	strelka	intergenic_region	MODIFIER	Dbp80-eIF-4B	intergenic	intergenic	intergenic
A512R23	3R	290822	T	'TC'	GTACTGGTC	INS	GTACTGGTC	0.241	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
A512R23	3R	1153746	T	'TA'	AAAATAAAA	INS	AAAATAAAA	0.234	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R23	3R	2386225	C	'CA'	CCGTCAAAA	INS	CCGTCAAAA	0.119	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R23	3R	2428741	GAT	'G'	AGTTGATAT	INS	AGTTGATAT	0.0533	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A512R23	3R	6326819	GGA	'G'	TTCGGGAGA	INS	TTCGGGAGA	0.0606	strelka	3_prime_UTR_variant	MODIFIER	Osi17	3UTR	Osi17	FBgn0037427
A512R23	3R	10903513	CGT	'C'	TGGGCGTGT	INS	TGGGCGTGT	0.0806	strelka	upstream_gene_variant	MODIFIER	CR45578	intergenic	intergenic	intergenic
A512R23	3R	10953593	AT	'A'	GGGTATTTT	INS	GGGTATTTT	0.0667	strelka	downstream_gene_variant	MODIFIER	Tengl4	intergenic	intergenic	intergenic
A512R23	3R	12716342	CT	'C'	TCCCCTTTT	INS	TCCCCTTTT	0.139	strelka	upstream_gene_variant	MODIFIER	mus308	intron	Men	FBgn0002719
A512R23	3R	12949742	ACAG	'A'	AACGACAGC	INS	AACGACAGC	0.075	strelka	downstream_gene_variant	MODIFIER	grsm	intergenic	intergenic	intergenic
A512R23	3R	13011373	GT	'G'	TATCGTTTT	INS	TATCGTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	CG8031	intergenic	intergenic	intergenic
A512R23	3R	13021844	TAC	'T'	ACCTTACAC	INS	ACCTTACAC	0.121	strelka	3_prime_UTR_variant	MODIFIER	CtBP	3UTR	CtBP	FBgn0020496
A512R23	3R	13984683	GT	'G'	AACTGTTTT	INS	AACTGTTTT	0.0685	strelka	upstream_gene_variant	MODIFIER	rdx	intron	rdx	FBgn0264493
A512R23	3R	13992149	GA	'G'	AAAAGAAAA	INS	AAAAGAAAA	0.0769	strelka	intron_variant	MODIFIER	rdx	intron	rdx	FBgn0264493
A512R23	3R	16589145	GT	'G'	TTGGGTTTT	INS	TTGGGTTTT	0.176	strelka	intergenic_region	MODIFIER	Scp2-CG14892	intergenic	intergenic	intergenic
A512R23	3R	16740478	A	'ATCTTCTTT'	TGATAAAAT	INS	ATTTTATCA	0.167	strelka	downstream_gene_variant	MODIFIER	bxd	intergenic	intergenic	intergenic
A512R23	3R	16740482	T	'TTCTTAGGTTA'	AAAATAAAA	INS	AAAATAAAA	0.167	strelka	downstream_gene_variant	MODIFIER	bxd	intergenic	intergenic	intergenic
A512R23	3R	16740492	CT	'C'	AATCCTTTT	INS	AATCCTTTT	0.25	strelka	downstream_gene_variant	MODIFIER	bxd	intergenic	intergenic	intergenic
A512R23	3R	17773464	AAG	'A'	GTCAAAGAT	INS	GTCAAAGAT	0.225	strelka	intron_variant	MODIFIER	CG43102	intron	CG43102	FBgn0262562
A512R23	3R	18083306	GA	'G'	CTTCGAAAA	INS	CTTCGAAAA	0.0893	strelka	downstream_gene_variant	MODIFIER	CG14317	intergenic	intergenic	intergenic
A512R23	3R	18462633	CT	'C'	TCGTCTTTT	INS	TCGTCTTTT	0.0909	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
A512R23	3R	18884776	G	'GA'	TGGTGAAAA	INS	TTTTCACCA	0.102	strelka	intergenic_region	MODIFIER	CG14298-CG14297	intergenic	intergenic	intergenic
A512R23	3R	20989123	GT	'G'	CCCTGTTTT	INS	CCCTGTTTT	0.139	strelka	upstream_gene_variant	MODIFIER	CG43446	intron	Calx	FBgn0013995
A512R23	3R	21429366	CATCTGGGT	'C'	TGGGCATCT	INS	TGGGCATCT	0.294	strelka	intron_variant	MODIFIER	lbl	intron	lbl	FBgn0008651
A512R23	3R	21558085	ACT	'A'	TCGCACTCT	INS	TCGCACTCT	0.0769	strelka	upstream_gene_variant	MODIFIER	slou	intergenic	intergenic	intergenic
A512R23	3R	22077862	C	'CAT'	TATACATAT	INS	TATACATAT	0.15	strelka	3_prime_UTR_variant	MODIFIER	how	exon_9	how	FBgn0264491
A512R23	3R	22684529	TGTGA	'T'	TGTGTGTGA	INS	TGTGTGTGA	0.0455	mutect2	upstream_gene_variant	MODIFIER	CG17625	intergenic	intergenic	intergenic
A512R23	3R	22711737	TGTA	'T'	TTTCTGTAG	INS	TTTCTGTAG	0.0851	strelka	disruptive_inframe_deletion	MODERATE	wge	exon	wge	FBgn0051151
A512R23	3R	22794355	AAGGCGG	'A'	ATGTAAGGC	INS	ATGTAAGGC	0.32	strelka	downstream_gene_variant	MODIFIER	CG7029	intergenic	intergenic	intergenic
A512R23	3R	23824248	AATTGGTTAACTAAGCTTATTTTAGATGGGAGGGTAC	'A'	ATTGAATTG	INS	ATTGAATTG	0.316	strelka	upstream_gene_variant	MODIFIER	snRNA:U1:95Cc	intron	CG34355	FBgn0085384
A512R23	3R	27091193	GA	'G'	AGGGGAAAA	INS	AGGGGAAAA	0.0417	mutect2	upstream_gene_variant	MODIFIER	Cpr97Ea	intergenic	intergenic	intergenic
A512R23	3R	27270976	GCA	'G'	TCGCGCACA	INS	TCGCGCACA	0.255	strelka	upstream_gene_variant	MODIFIER	CG5934	intron	l(3)mbt	FBgn0002441
A512R23	3R	27812684	GGT	'G'	GTCTGGTGT	INS	GTCTGGTGT	0.125	strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
A512R23	3R	27911730	TTG	'T'	GTTGTTGTG	INS	GTTGTTGTG	0.125	strelka	upstream_gene_variant	MODIFIER	mil	intergenic	intergenic	intergenic
A512R23	3R	28134116	T	'TA'	TTGTTCAAA	INS	TTGTTCAAA	0.0714	strelka	downstream_gene_variant	MODIFIER	CR46077	intergenic	intergenic	intergenic
A512R23	3R	28888606	AAC	'A'	GGAAAACAA	INS	GGAAAACAA	0.0727	strelka	upstream_gene_variant	MODIFIER	CG33203	intron	Doa	FBgn0265998
A512R23	3R	29394228	T	'TG'	ACATTTTTT	INS	ACATTTTTT	0.0656	strelka	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
A512R23	3R	29787640	T	'TTTC'	CTTTTTCTT	INS	CTTTTTCTT	0.208	strelka	upstream_gene_variant	MODIFIER	kay	intron	kay	FBgn0001297
A512R23	3R	30661510	TGA	'T'	CTGTTGAGA	INS	CTGTTGAGA	0.0541	strelka	upstream_gene_variant	MODIFIER	CR45191	intergenic	intergenic	intergenic
A512R23	3R	31152326	GA	'G'	AATGGAAAA	INS	AATGGAAAA	0.273	strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
A512R23	3R	31152353	C	'CTATAT'	GTTGCTTAT	INS	GTTGCTTAT	0.214	strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
A512R23	3R	31152359	T	'TTATA'	TATCTGAGC	INS	TATCTGAGC	0.243	strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
A512R23	X	992178	CGT	'C'	TGAGCGTGT	INS	TGAGCGTGT	0.129	strelka	downstream_gene_variant	MODIFIER	CG18823	intergenic	intergenic	intergenic
A512R23	X	2543751	GCA	'G'	ACTCGCACA	INS	ACTCGCACA	0.115	strelka	downstream_gene_variant	MODIFIER	mir-4955	intron	trol	FBgn0267911
A512R23	X	2962800	G	'GA'	GGCAGAAAA	INS	TTTTCTGCC	0.125	strelka	intron_variant	MODIFIER	kirre	intron	rst	FBgn0003285
A512R23	X	3722579	TCA	'T'	TTCGTCACA	INS	TTCGTCACA	0.172	strelka	upstream_gene_variant	MODIFIER	Rala	intron	Tlk	FBgn0283657
A512R23	X	4057858	GCA	'G'	CATGGCACA	INS	CATGGCACA	0.167	strelka	intergenic_region	MODIFIER	CR45482-CG43689	intergenic	intergenic	intergenic
A512R23	X	4854510	G	'GA'	GGGAGAAAA	INS	TTTTCTCCC	0.119	strelka	intron_variant	MODIFIER	CG42594	intron	CG42594	FBgn0260971
A512R23	X	5794879	CTG	'C'	TCTTCTGTG	INS	TCTTCTGTG	0.139	strelka	upstream_gene_variant	MODIFIER	CR44832	intergenic	intergenic	intergenic
A512R23	X	6148784	C	'CT'	CTTTCTTTT	INS	CTTTCTTTT	0.0976	strelka	intron_variant	MODIFIER	Ca-alpha1T	intron	Ca-alpha1T	FBgn0264386
A512R23	X	6422832	AT	'A'	TTCCATTTT	INS	TTCCATTTT	0.188	strelka	upstream_gene_variant	MODIFIER	CG33668	intergenic	intergenic	intergenic
A512R23	X	6466857	TTG	'T'	GTTGTTGTG	INS	GTTGTTGTG	0.2	strelka	3_prime_UTR_variant	MODIFIER	CG42340	exon_7	CG42340	FBgn0259242
A512R23	X	7628628	TAC	'T'	TCCCTACAC	INS	TCCCTACAC	0.243	strelka	upstream_gene_variant	MODIFIER	ct	intron	ct	FBgn0004198
A512R23	X	7773862	G	'GT'	TGCTGTTTT	INS	AAAACAGCA	0.121	strelka	upstream_gene_variant	MODIFIER	CG32718	intergenic	intergenic	intergenic
A512R23	X	8347239	GCA	'G'	ACCCGCACA	INS	ACCCGCACA	0.167	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
A512R23	X	8674573	AC	'A'	GAAAACAAA	INS	GAAAACAAA	0.109	mutect2	upstream_gene_variant	MODIFIER	CG12772	intergenic	intergenic	intergenic
A512R23	X	9703479	GA	'G'	AAAAGAAAA	INS	AAAAGAAAA	0.105	strelka	intergenic_region	MODIFIER	btd-CR43498	intergenic	intergenic	intergenic
A512R23	X	9776966	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	CG1354	intergenic	intergenic	intergenic
A512R23	X	9846898	GCA	'G'	ACAAGCACA	INS	ACAAGCACA	0.111	strelka	intron_variant	MODIFIER	CG32698	intron	CG32698	FBgn0052698
A512R23	X	10724992	CGA	'C'	AAAGCGAGA	INS	AAAGCGAGA	0.125	strelka	intron_variant	MODIFIER	CG32676	intron	CG32676	FBgn0052676
A512R23	X	10744864	TAC	'T'	CCACTACAC	INS	CCACTACAC	0.138	strelka	5_prime_UTR_variant	MODIFIER	CG32676	exon_2	CR44766	FBgn0265987
A512R23	X	12683548	GA	'G'	ATTTGAAAA	INS	ATTTGAAAA	0.297	strelka	downstream_gene_variant	MODIFIER	Tis11	intergenic	intergenic	intergenic
A512R23	X	12760707	C	'CGTGTGG'	CTCGCGTGT	INS	CTCGCGTGT	0.188	strelka	3_prime_UTR_variant	MODIFIER	CG12717	3UTR	CG12717	FBgn0030420
A512R23	X	13301121	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.13	strelka	upstream_gene_variant	MODIFIER	CG1764	intron	CG1764	FBgn0030467
A512R23	X	13394892	CA	'C'	ATCCCAAAA	INS	ATCCCAAAA	0.179	strelka	upstream_gene_variant	MODIFIER	CR44620	intergenic	intergenic	intergenic
A512R23	X	13867657	GT	'G'	GTGAGTTTT	INS	GTGAGTTTT	0.174	strelka	3_prime_UTR_variant	MODIFIER	mamo	3UTR	mamo	FBgn0267033
A512R23	X	13868153	G	'GT'	GTTTGTTTT	INS	AAAACAAAC	0.093	strelka	3_prime_UTR_variant	MODIFIER	mamo	3UTR	mamo	FBgn0267033
A512R23	X	13961332	GA	'G'	GGCCGAAAA	INS	GGCCGAAAA	0.194	strelka	downstream_gene_variant	MODIFIER	CG11068	intron	mamo	FBgn0267033
A512R23	X	14035810	C	'CT'	GTGTCTTTT	INS	GTGTCTTTT	0.217	strelka	intergenic_region	MODIFIER	tRNA:S7:12Ed-Ste:CG33247	intergenic	intergenic	intergenic
A512R23	X	14627215	CGT	'C'	TGGGCGTGT	INS	TGGGCGTGT	0.143	strelka	intron_variant	MODIFIER	NetA	intron	NetA	FBgn0015773
A512R23	X	14695717	TTG	'T'	TTCGTTGTG	INS	TTCGTTGTG	0.139	strelka	intron_variant	MODIFIER	NetB	intron	NetB	FBgn0015774
A512R23	X	17201471	CT	'C'	AACGCTTTT	INS	AACGCTTTT	0.214	strelka	upstream_gene_variant	MODIFIER	CG5070	intron	CG8918	FBgn0030823
A512R23	X	17343147	GCA	'G'	TCCAGCACA	INS	TCCAGCACA	0.108	strelka	intergenic_region	MODIFIER	B-H2-CR43491	intergenic	intergenic	intergenic
A512R23	X	17690220	C	'CG'	CAAGCAAAA	INS	CAAGCAAAA	0.122	mutect2	intron_variant	MODIFIER	chas	intron	chas	FBgn0263258
A512R23	X	20703165	TC	'T'	TTTTTCTTT	INS	TTTTTCTTT	0.118	strelka	intergenic_region	MODIFIER	run-CG1324	intergenic	intergenic	intergenic
A512R23	Y	1114346	TA	'T'	TAGATATAA	INS	TAGATATAA	0.143	strelka	intergenic_region	MODIFIER	Su(Ste):CR45796-CR40629	intergenic	intergenic	intergenic
A512R23	Y	3623671	CACATGTATGAAA	'C'	TATGCACAT	INS	TATGCACAT	0.231	strelka	intergenic_region	MODIFIER	Ory-Ccy	intergenic	intergenic	intergenic
A573R25	211000022278498	13020	T	'TAAGA'		INS		0.171	strelka	downstream_gene_variant	MODIFIER	CR42195	intergenic	intergenic	intergenic
A573R25	211000022278498	13021	GGTCCTCC	'G'		INS		0.171	strelka	downstream_gene_variant	MODIFIER	CR42195	intergenic	intergenic	intergenic
A573R25	2L	4129658	G	'GAGGCAGGAA'	TTTGGAGGT	INS	ACCTCCAAA	0.24	strelka	intergenic_region	MODIFIER	Sr-CI-CG2955	intergenic	intergenic	intergenic
A573R25	2L	5271160	AAC	'A'	ACCAAACAC	INS	ACCAAACAC	0.0727	strelka	downstream_gene_variant	MODIFIER	Cyp4ac2	intron	tkv	FBgn0003716
A573R25	2L	5608595	ATCTGGAGGTTCATACGAACGGACAAGCGGATACG	'A'	TGAGATCTG	INS	TGAGATCTG	0.258	strelka	intron_variant	MODIFIER	CG14010	intron	DIP-eta	FBgn0031725
A573R25	2L	5814743	AGCTCTTCCAGTAAATAAACAAGGAAAAGCT	'A'	GTCAAGCTC	INS	GTCAAGCTC	0.265	strelka	downstream_gene_variant	MODIFIER	CR44575	intergenic	intergenic	intergenic
A573R25	2L	7475870	A	'AGGTG'	TTACAGGTG	INS	CACCTGTAA	0.167	strelka	frameshift_variant	HIGH	CG6441	exon_1	CG6441	FBgn0031920
A573R25	2L	8550170	CA	'C'	ATGGCATTT	INS	ATGGCATTT	0.143	strelka	intron_variant	MODIFIER	Sema-1a	intron	Sema-1a	FBgn0011259
A573R25	2L	10711839	G	'GATTTTACA'	TTGTGATTT	INS	AAATCACAA	0.152	strelka	upstream_gene_variant	MODIFIER	Lip2	intergenic	intergenic	intergenic
A573R25	2L	10797738	CA	'C'	TGGACAAAA	INS	TGGACAAAA	0.267	strelka	downstream_gene_variant	MODIFIER	CR44581	intron	CG31869	FBgn0051869
A573R25	2L	10933403	GAC	'G'	CACTGACAC	INS	CACTGACAC	0.087	strelka	upstream_gene_variant	MODIFIER	CG14072	intron	dpr2	FBgn0261871
A573R25	2L	10960704	CA	'C'	AGGCCAAAA	INS	AGGCCAAAA	0.14	strelka	downstream_gene_variant	MODIFIER	CG33129	intron	dpr2	FBgn0261871
A573R25	2L	12180049	AAG	'A'	TTAAAAGAG	INS	TTAAAAGAG	0.182	strelka	upstream_gene_variant	MODIFIER	atilla	intron	bru1	FBgn0000114
A573R25	2L	12859234	A	'AAAGTATCT'	ACCCAAGGC	INS	GCCTTGGGT	0.303	strelka	intergenic_region	MODIFIER	CR44971-ACXC	intergenic	intergenic	intergenic
A573R25	2L	16240595	C	'CA'	AAAGCAAAA	INS	AAAGCAAAA	0.182	strelka	3_prime_UTR_variant	MODIFIER	CG42817	3UTR	CG42817	FBgn0261999
A573R25	2L	16565200	TG	'T'	TTTTTGGGT	INS	TTTTTGGGT	0.087	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
A573R25	2L	17165306	GA	'G'	CTCCGAAAA	INS	CTCCGAAAA	0.0702	strelka	intron_variant	MODIFIER	beat-IIIa	intron	CG34106	FBgn0083942
A573R25	2L	17717302	GT	'G'	CTTAGTTTT	INS	CTTAGTTTT	0.133	strelka	intron_variant	MODIFIER	CadN	intron	CadN	FBgn0015609
A573R25	2L	21707126	T	'TA'	CATTTAAAA	INS	CATTTAAAA	0.108	strelka	intron_variant	MODIFIER	CG31619	intron	nolo	FBgn0051619
A573R25	2L	22408868	TA	'T'	ATAATAAAA	INS	ATAATAAAA	0.167	strelka	intergenic_region	MODIFIER	CG17018-RpL5	intergenic	intergenic	intergenic
A573R25	2R	3821740	TA	'T'	AATCTAAAA	INS	AATCTAAAA	0.0968	strelka	intergenic_region	MODIFIER	RYa-uex	intergenic	intergenic	intergenic
A573R25	2R	4246957	CA	'C'	AGTGCAAAA	INS	AGTGCAAAA	0.121	strelka	upstream_gene_variant	MODIFIER	IntS3	intergenic	intergenic	intergenic
A573R25	2R	6266442	CT	'C'	GAACCTTTT	INS	GAACCTTTT	0.0694	strelka	intergenic_region	MODIFIER	Pld-CR46075	intergenic	intergenic	intergenic
A573R25	2R	8656464	CT	'C'	ACTCCTTTT	INS	ACTCCTTTT	0.0755	mutect2	upstream_gene_variant	MODIFIER	CR44281	intron	ptc	FBgn0003892
A573R25	2R	11064653	C	'CGGAGATTAAAGACAGCCAAATTCT'	TCTGCGGAG	INS	TCTGCGGAG	0.216	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
A573R25	2R	11540860	CATGTTTTAATTGTTATTAATAATAAATGTGCTTAAGATA	'C'	CTTGCATGT	INS	CTTGCATGT	0.25	strelka	intergenic_region	MODIFIER	en-tou	intergenic	intergenic	intergenic
A573R25	2R	11712482	C	'CAGTTGTTTTA'	CACCCAAAA	INS	CACCCAAAA	0.214	strelka	5_prime_UTR_variant	MODIFIER	pyr	5UTR	pyr	FBgn0033649
A573R25	2R	12054555	GT	'G'	CAGAGTTTT	INS	CAGAGTTTT	0.0727	strelka	3_prime_UTR_variant	MODIFIER	CG44314	exon_2	CG44314	FBgn0265373
A573R25	2R	12221899	TA	'T'	ATTCTAAAA	INS	ATTCTAAAA	0.121	strelka	downstream_gene_variant	MODIFIER	CG8854	intergenic	intergenic	intergenic
A573R25	2R	12248331	GA	'G'	GGGGGAAAA	INS	GGGGGAAAA	0.439	strelka	upstream_gene_variant	MODIFIER	CG43244	intergenic	intergenic	intergenic
A573R25	2R	12801096	AGG	'A'	TCGAAGGGC	INS	TCGAAGGGC	0.28	strelka	3_prime_UTR_variant	MODIFIER	sca	3UTR	sca	FBgn0003326
A573R25	2R	13769030	T	'TCTTC'	AAGTTCTAT	INS	AAGTTCTAT	0.182	mutect2	upstream_gene_variant	MODIFIER	Cpr50Ca	intergenic	intergenic	intergenic
A573R25	2R	14030278	ACAG	'A'	GGCAACAGC	INS	GGCAACAGC	0.108	strelka	upstream_gene_variant	MODIFIER	mam	intron	mam	FBgn0002643
A573R25	2R	16523429	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.118	strelka	intron_variant	MODIFIER	Sema-2a	intron	Sema-2a	FBgn0011260
A573R25	2R	17352857	G	'GC'	ACGAGCCCT	INS	AGGGCTCGT	0.0625	strelka	3_prime_UTR_variant	MODIFIER	mbl	3UTR	mbl	FBgn0265487
A573R25	2R	19053162	GT	'G'	AGGGGTGGG	INS	AGGGGTGGG	0.103	strelka	downstream_gene_variant	MODIFIER	CG15116	intergenic	intergenic	intergenic
A573R25	2R	21239231	T	'TATTTCTAA'	TACTTATGT	INS	TACTTATGT	0.179	strelka	intron_variant	MODIFIER	ASPP	intron	ASPP	FBgn0034606
A573R25	2R	21239249	A	'AATTCTAAT'	TTCTAACTT	INS	AAGTTAGAA	0.296	strelka	intron_variant	MODIFIER	ASPP	intron	ASPP	FBgn0034606
A573R25	2R	22746436	C	'CAAAA'	ACAACAACA	INS	ACAACAACA	0.259	strelka	intron_variant	MODIFIER	CG42260	intron	CG42260	FBgn0259145
A573R25	2R	25210880	A	'ATATATTATTATATT'	TTAAAAGCG	INS	CGCTTTTAA	0.35	strelka	intron_variant	MODIFIER	CG9380	intron	CG9380	FBgn0035094
A573R25	3L	1092813	T	'TTA'	AGATTTATA	INS	AGATTTATA	0.136	strelka	intron_variant	MODIFIER	bab1	intron	bab1	FBgn0004870
A573R25	3L	2309810	AATTATAT	'A'	TATAAATTA	INS	TATAAATTA	0.174	strelka	intergenic_region	MODIFIER	MsR2-CR45427	intergenic	intergenic	intergenic
A573R25	3L	6554759	GT	'G'	TTTCGTTTT	INS	TTTCGTTTT	0.1	strelka	downstream_gene_variant	MODIFIER	sfl	intron	CG18769	FBgn0042185
A573R25	3L	9187690	AC	'A'	ACCAACAAA	INS	ACCAACAAA	0.0882	strelka	intergenic_region	MODIFIER	Rdl-Slc45-1	intergenic	intergenic	intergenic
A573R25	3L	9628213	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.0909	strelka	frameshift_variant	HIGH	Or67b	exon_6	Or67b	FBgn0036019
A573R25	3L	10024746	GT	'G'	CCTTGTTTT	INS	CCTTGTTTT	0.143	strelka	downstream_gene_variant	MODIFIER	CR45155	intron	dpr6	FBgn0040823
A573R25	3L	10678833	GA	'G'	TTAAGAAAA	INS	TTAAGAAAA	0.0455	mutect2	intron_variant	MODIFIER	simj	intron	simj	FBgn0010762
A573R25	3L	11751148	T	'TCA'	ATATTTGCT	INS	ATATTTGCT	0.115	strelka	upstream_gene_variant	MODIFIER	Gr68a	intron	CG6024	FBgn0036202
A573R25	3L	12047741	C	'CAA'	AAAACAACA	INS	AAAACAACA	0.244	strelka	downstream_gene_variant	MODIFIER	CG6793	intron	rols	FBgn0041096
A573R25	3L	12047747	C	'CTTCACCGCTTCAAAACTTA'	ACAGCAGAT	INS	ACAGCAGAT	0.25	strelka	downstream_gene_variant	MODIFIER	CG6793	intron	rols	FBgn0041096
A573R25	3L	13798198	A	'AT'	CATAATTTT	INS	AAAATTATG	0.308	strelka	5_prime_UTR_variant	MODIFIER	bru-3	exon_1	bru3	FBgn0264001
A573R25	3L	15420912	TCA	'T'	GATGTCACA	INS	GATGTCACA	0.0857	strelka	intergenic_region	MODIFIER	CG33259-CR43625	intergenic	intergenic	intergenic
A573R25	3L	16294500	G	'GAAGCTAAA'	GTGTGTGTG	INS	CACACACAC	0.323	strelka	upstream_gene_variant	MODIFIER	CG13045	intergenic	intergenic	intergenic
A573R25	3L	16294501	TG	'T'	TGTGTGTGT	INS	TGTGTGTGT	0.3	strelka	upstream_gene_variant	MODIFIER	CG13045	intergenic	intergenic	intergenic
A573R25	3L	16294507	A	'ATACCTG'	TGTTAAAAC	INS	GTTTTAACA	0.286	strelka	upstream_gene_variant	MODIFIER	CG13045	intergenic	intergenic	intergenic
A573R25	3L	18526071	ACG	'A'	TAACACGAA	INS	TAACACGAA	0.3	strelka	upstream_gene_variant	MODIFIER	CG32198	intergenic	intergenic	intergenic
A573R25	3L	20472819	ATTG	'A'	CATCATTGT	INS	CATCATTGT	0.125	strelka	disruptive_inframe_deletion	MODERATE	CG32428	exon_2	CG32428	FBgn0052428
A573R25	3L	21163293	ACATACAATTTTCCTGGCTGAAGTTT	'A'	AGGTACATA	INS	AGGTACATA	0.12	strelka	intron_variant	MODIFIER	Ac78C	intron	Ac78C	FBgn0024150
A573R25	3L	21994820	G	'GT'	CTTGGTTTT	INS	AAAACCAAG	0.0805	strelka	intergenic_region	MODIFIER	Act79B-CG7140	intergenic	intergenic	intergenic
A573R25	3L	23965594	CA	'C'	ATAACAAAA	INS	ATAACAAAA	0.2	strelka	intron_variant	MODIFIER	CG40470	intron	CG40470	FBgn0058470
A573R25	3R	4189275	T	'TA'	ATTATAAAA	INS	ATTATAAAA	0.286	strelka	upstream_gene_variant	MODIFIER	CR33294	pseudogene	CR33294	FBgn0053294
A573R25	3R	4546781	CT	'C'	AGTGCTTTT	INS	AGTGCTTTT	0.0602	strelka	downstream_gene_variant	MODIFIER	Mur82C	intron	CG34357	FBgn0085386
A573R25	3R	4905291	GA	'G'	TTGAGAAAA	INS	TTGAGAAAA	0.243	strelka	upstream_gene_variant	MODIFIER	Gnf1	intergenic	intergenic	intergenic
A573R25	3R	7187257	CGT	'C'	TACGCGTGT	INS	TACGCGTGT	0.069	strelka	5_prime_UTR_variant	MODIFIER	lap	5UTR	lap	FBgn0086372
A573R25	3R	7627469	CA	'C'	AAAACAAAT	INS	AAAACAAAT	0.087	strelka	upstream_gene_variant	MODIFIER	CR44332	intron	Nlg3	FBgn0083963
A573R25	3R	8350051	GA	'G'	AAGTGAAAA	INS	AAGTGAAAA	0.132	strelka	5_prime_UTR_variant	MODIFIER	Atg13	5UTR	Atg13	FBgn0261108
A573R25	3R	8533443	GA	'G'	ATTCGAAAA	INS	ATTCGAAAA	0.087	strelka	upstream_gene_variant	MODIFIER	CG11741	intergenic	intergenic	intergenic
A573R25	3R	9449280	G	'GA'	TTATGAAAA	INS	TTTTCATAA	0.154	strelka	3_prime_UTR_variant	MODIFIER	ps	3UTR	ps	FBgn0261552
A573R25	3R	9489646	GATATAT	'G'	GCACGATAT	INS	GCACGATAT	0.08	strelka	intron_variant	MODIFIER	CG16779	intron	CG16779	FBgn0037698
A573R25	3R	9857653	GA	'G'	GACCGAAAA	INS	GACCGAAAA	0.156	strelka	intron_variant	MODIFIER	Teh1	intron	Teh1	FBgn0037766
A573R25	3R	10724585	AT	'A'	TTTGATTTT	INS	TTTGATTTT	0.167	strelka	intergenic_region	MODIFIER	CG4073-tomboy20	intergenic	intergenic	intergenic
A573R25	3R	10752290	AT	'A'	AGGTATTTT	INS	AGGTATTTT	0.0968	strelka	upstream_gene_variant	MODIFIER	TkR86C	intergenic	intergenic	intergenic
A573R25	3R	11593398	GA	'G'	GTAGGAAAA	INS	GTAGGAAAA	0.0649	strelka	upstream_gene_variant	MODIFIER	CG6791	intron	Jupiter	FBgn0051363
A573R25	3R	13462344	TA	'T'	TTCCTAAAA	INS	TTCCTAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	CR45914	exon_2	CR17025	FBgn0040554
A573R25	3R	13527419	T	'TA'	CGGGTAAAA	INS	CGGGTAAAA	0.0976	strelka	upstream_gene_variant	MODIFIER	CG12538	intergenic	intergenic	intergenic
A573R25	3R	18538818	GT	'G'	GGGAGTTTT	INS	GGGAGTTTT	0.0755	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
A573R25	3R	18946808	ATCATAG	'A'	CCAAATCAT	INS	CCAAATCAT	0.4	strelka	upstream_gene_variant	MODIFIER	CG43732	intron	CG42613	FBgn0261262
A573R25	3R	18946827	TTAACACAAATAAA	'T'	TTTTTTAAC	INS	TTTTTTAAC	0.533	strelka	upstream_gene_variant	MODIFIER	CG43732	intron	CG42613	FBgn0261262
A573R25	3R	19112622	C	'CTTTTGCAGT'	GTAGCTCGA	INS	GTAGCTCGA	0.217	strelka	intron_variant	MODIFIER	CG6040	intron	CG6040	FBgn0038679
A573R25	3R	19589555	TA	'T'	ACGTTAAAA	INS	ACGTTAAAA	0.118	strelka	downstream_gene_variant	MODIFIER	snoRNA:Me18S-A1374	intron	Dys	FBgn0260003
A573R25	3R	20294675	ACAG	'A'	TGCAACAGC	INS	TGCAACAGC	0.0952	strelka	disruptive_inframe_deletion	MODERATE	cic	exon_3	cic	FBgn0262582
A573R25	3R	20394837	GAAACGAAATATCACTATTTTTGCAGCT	'G'	AAAAGAAAC	INS	AAAAGAAAC	0.19	strelka	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
A573R25	3R	22799288	C	'CAATAAATGATAACTGCTTGT'	GAAGCATAA	INS	GAAGCATAA	0.12	strelka	intergenic_region	MODIFIER	CG7029-CG7031	intergenic	intergenic	intergenic
A573R25	3R	23003608	GCA	'G'	ATATGCACA	INS	ATATGCACA	0.104	strelka	intron_variant	MODIFIER	CG34375	intron	CG34375	FBgn0085404
A573R25	3R	26065682	GT	'G'	TCTTGTTTT	INS	TCTTGTTTT	0.219	strelka	upstream_gene_variant	MODIFIER	CG14551	intergenic	intergenic	intergenic
A573R25	3R	26270374	AAT	'A'	AAATAATAT	INS	AAATAATAT	0.148	strelka	intron_variant	MODIFIER	CG6154	intron	CG6154	FBgn0039420
A573R25	3R	28479191	GAAGAACTAAGAACTAGAAGAAGAAGAACTA	'G'	TTTAGAAGA	INS	TTTAGAAGA	0.13	strelka	downstream_gene_variant	MODIFIER	beat-VI	intergenic	intergenic	intergenic
A573R25	3R	30758230	GA	'G'	ATTTGAGAA	INS	ATTTGAGAA	0.0513	strelka	intergenic_region	MODIFIER	CR43238-zfh1	intergenic	intergenic	intergenic
A573R25	4	1250614	G	'GTA'	TTTGGTATA	INS	TATACCAAA	0.231	strelka	intron_variant	MODIFIER	Caps	intron	Cadps	FBgn0053653
A573R25	X	691556	TA	'T'	AAAATAAAA	INS	AAAATAAAA	0.167	strelka	intron_variant	MODIFIER	sdk	intron	sdk	FBgn0021764
A573R25	X	1321796	GAC	'G'	GCTGGACAC	INS	GCTGGACAC	0.103	strelka	upstream_gene_variant	MODIFIER	fs(1)N	intron	DAAM	FBgn0025641
A573R25	X	1650313	AT	'A'	TACGATTTT	INS	TACGATTTT	0.121	strelka	upstream_gene_variant	MODIFIER	CG11509	3UTR	br	FBgn0283451
A573R25	X	1825283	GT	'G'	CGTGGTTTT	INS	CGTGGTTTT	0.148	strelka	5_prime_UTR_variant	MODIFIER	CG42666	5UTR	CG42666	FBgn0261548
A573R25	X	2781746	G	'GT'	TTATGTTTT	INS	AAAACATAA	0.16	strelka	downstream_gene_variant	MODIFIER	CG32795	intron	kirre	FBgn0028369
A573R25	X	3003417	GA	'G'	CCCCGAAAA	INS	CCCCGAAAA	0.167	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A573R25	X	3464282	GT	'G'	GCCTGTTTT	INS	GCCTGTTTT	0.273	strelka	upstream_gene_variant	MODIFIER	CG16782	ncRNA	CR44999	FBgn0266350
A573R25	X	3624960	GT	'G'	AAAGGTTTT	INS	AAAGGTTTT	0.111	strelka	intron_variant	MODIFIER	AstA-R1	intron	AstA-R1	FBgn0266429
A573R25	X	3714575	A	'ATATTTTTT'	TGGCATTTT	INS	AAAATGCCA	0.333	strelka	intron_variant	MODIFIER	Rala	intron	Rala	FBgn0015286
A573R25	X	3919647	CA	'C'	GTACCAAAA	INS	GTACCAAAA	0.2	strelka	intron_variant	MODIFIER	CG42541	intron	CG42541	FBgn0260658
A573R25	X	4546502	T	'TTTTG'	TATTTTTTT	INS	TATTTTTTT	0.25	strelka	3_prime_UTR_variant	MODIFIER	Usf	3UTR	Usf	FBgn0029711
A573R25	X	4853063	TTC	'T'	ATTTTTCTC	INS	ATTTTTCTC	0.0851	strelka	intron_variant	MODIFIER	CG42594	intron	CG42594	FBgn0260971
A573R25	X	5398789	A	'ACT'	CGCCACTCT	INS	AGAGTGGCG	0.125	strelka	downstream_gene_variant	MODIFIER	SK	intron	SK	FBgn0029761
A573R25	X	6309107	AAC	'A'	CACCAACAC	INS	CACCAACAC	0.128	strelka	upstream_gene_variant	MODIFIER	CG15894	intergenic	intergenic	intergenic
A573R25	X	7154075	AAC	'A'	CTTAAACAC	INS	CTTAAACAC	0.167	strelka	upstream_gene_variant	MODIFIER	CR32730	intron	CG9650	FBgn0029939
A573R25	X	8019641	G	'GT'	TATTGTTTT	INS	AAAACAATA	0.16	strelka	frameshift_variant	HIGH	CG15333	exon	CG15333	FBgn0029989
A573R25	X	8050914	GT	'G'	TTTGGTTTT	INS	TTTGGTTTT	0.185	strelka	intron_variant	MODIFIER	fs(1)h	intron	fs(1)h	FBgn0004656
A573R25	X	8666076	GC	'G'	TCTTGCTTT	INS	TCTTGCTTT	0.13	strelka	intergenic_region	MODIFIER	oc-CG12772	intergenic	intergenic	intergenic
A573R25	X	8694244	ATC	'A'	CTCTATCTC	INS	CTCTATCTC	0.125	mutect2	upstream_gene_variant	MODIFIER	Ppt1	intergenic	intergenic	intergenic
A573R25	X	8793439	TA	'T'	GGAATAAAA	INS	GGAATAAAA	0.2	strelka	intron_variant	MODIFIER	Lim1	intron	Lim1	FBgn0026411
A573R25	X	9642094	GA	'G'	AAAAGAAAA	INS	AAAAGAAAA	0.222	strelka	upstream_gene_variant	MODIFIER	l(1)G0232	intron	Ptpmeg2	FBgn0028341
A573R25	X	9643078	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.174	strelka	upstream_gene_variant	MODIFIER	l(1)G0232	intron	Ptpmeg2	FBgn0028341
A573R25	X	9892395	GT	'G'	TGGGGTTTT	INS	TGGGGTTTT	0.208	strelka	intron_variant	MODIFIER	CG15249	intron	CG15249	FBgn0030161
A573R25	X	10427243	CA	'C'	TCGACAAAA	INS	TCGACAAAA	0.222	strelka	intron_variant	MODIFIER	CG32683	intron	CG32683	FBgn0052683
A573R25	X	10784143	GA	'G'	ACCAGAAAA	INS	ACCAGAAAA	0.148	strelka	upstream_gene_variant	MODIFIER	Ant2	intron	sesB	FBgn0003360
A573R25	X	10984421	G	'GA'	GAGCGAAAA	INS	TTTTCGCTC	0.179	strelka	intron_variant	MODIFIER	CG42339	intron	CG42339	FBgn0259241
A573R25	X	11434343	TG	'T'	TAACTGGGG	INS	TAACTGGGG	0.118	strelka	downstream_gene_variant	MODIFIER	Gs2	intron	Evi5	FBgn0262740
A573R25	X	12498160	GA	'G'	AAGAGAAAA	INS	AAGAGAAAA	0.235	strelka	upstream_gene_variant	MODIFIER	Mks1	intron	CG2556	FBgn0030396
A573R25	X	12632753	TTG	'T'	TGAATTGTG	INS	TGAATTGTG	0.111	strelka	upstream_gene_variant	MODIFIER	Aven	intron	Tomosyn	FBgn0030412
A573R25	X	14544846	AAC	'A'	TACGAACAC	INS	TACGAACAC	0.182	strelka	upstream_gene_variant	MODIFIER	CR45521	intergenic	intergenic	intergenic
A573R25	X	14711423	CT	'C'	TCTTCTTTT	INS	TCTTCTTTT	0.2	strelka	intron_variant	MODIFIER	NetB	intron	NetB	FBgn0015774
A573R25	X	14712581	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.185	strelka	intron_variant	MODIFIER	NetB	intron	NetB	FBgn0015774
A573R25	X	15481207	CT	'C'	GAGCCTTTT	INS	GAGCCTTTT	0.231	strelka	3_prime_UTR_variant	MODIFIER	CG6324	3UTR	CG6324	FBgn0030647
A573R25	X	15585025	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.267	strelka	3_prime_UTR_variant	MODIFIER	CG8097	3UTR	CG8097	FBgn0030660
A573R25	X	16102868	AT	'A'	TATTATTTT	INS	TATTATTTT	0.147	strelka	5_prime_UTR_variant	MODIFIER	CG42354	exon_2	CG42354	FBgn0259700
A573R25	X	16996214	CA	'C'	ATCACAAAA	INS	ATCACAAAA	0.25	strelka	intron_variant	MODIFIER	CG45002	intron	CG45002	FBgn0266354
A573R25	X	17001326	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.25	strelka	intron_variant	MODIFIER	CG45002	intron	CG45002	FBgn0266354
A573R25	X	17415254	CGT	'C'	GATGCGTGT	INS	GATGCGTGT	0.174	strelka	intron_variant	MODIFIER	CG8611	intron	CG8611	FBgn0027602
A573R25	X	17725413	CT	'C'	GAGACTTTT	INS	GAGACTTTT	0.318	strelka	intron_variant	MODIFIER	CG42684	intron	CG42684	FBgn0261570
A573R25	X	17809564	G	'GT'	TGCCGTTTT	INS	AAAACGGCA	0.375	strelka	intron_variant	MODIFIER	OdsH	intron	OdsH	FBgn0026058
A573R25	X	17963478	GGA	'G'	GTAAGGAGA	INS	GTAAGGAGA	0.135	strelka	intron_variant	MODIFIER	Sh	intron	Sh	FBgn0003380
A573R25	X	18327137	GT	'G'	AGTAGTTTT	INS	AGTAGTTTT	0.129	strelka	intron_variant	MODIFIER	CG6123	intron	CG6123	FBgn0030913
A573R25	X	18358443	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.214	strelka	upstream_gene_variant	MODIFIER	CG6123	intergenic	intergenic	intergenic
A573R25	X	18452876	TA	'T'	CTGGTAAAA	INS	CTGGTAAAA	0.167	strelka	intron_variant	MODIFIER	CG32547	intron	CG32547	FBgn0052547
A573R25	X	18474467	CA	'C'	AATACAAAA	INS	AATACAAAA	0.222	strelka	intron_variant	MODIFIER	CG32547	intron	CG32547	FBgn0052547
A573R25	X	18676777	CGCT	'C'	TAGCCGCTG	INS	TAGCCGCTG	0.176	strelka	upstream_gene_variant	MODIFIER	CR45710	intergenic	intergenic	intergenic
A573R25	X	19021338	GGT	'G'	GTGCGGTGT	INS	GTGCGGTGT	0.185	strelka	intron_variant	MODIFIER	CG43759	intron	CG43759	FBgn0264090
A573R25	X	22595554	CA	'C'	TTGGCAAAA	INS	TTGGCAAAA	0.132	strelka	intron_variant	MODIFIER	Cda4	intron	Cda4	FBgn0052499
A573R25	Y	69110	A	'AT'	TGAAATTTT	INS	AAAATTTCA	0.185	strelka	intron_variant	MODIFIER	kl-5	intron	kl-5	FBgn0267433
A573R27	2L	1556684	A	'AAC'	AACAAAAAA	INS	TTTTTTGTT	0.2	strelka	5_prime_UTR_variant	MODIFIER	haf	exon_2	haf	FBgn0261509
A573R27	2L	1634801	T	'TATG'	TATGTATAT	INS	TATGTATAT	0.188	strelka	intergenic_region	MODIFIER	CR44603-CR45695	intergenic	intergenic	intergenic
A573R27	2L	3792154	TTC	'T'	ACATTTCTT	INS	ACATTTCTT	0.0862	mutect2	intron_variant	MODIFIER	CG3921	intron	bark	FBgn0031571
A573R27	2L	4551069	A	'AT'	ATATATTTT	INS	AAAATATAT	0.227	strelka	intron_variant	MODIFIER	dp	intron	dpy	FBgn0053196
A573R27	2L	4893766	CA	'C'	TAGCCAAAA	INS	TAGCCAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	CR45716	intron	CG3036	FBgn0031645
A573R27	2L	5483883	ACTC	'A'	AGATACTCT	INS	AGATACTCT	0.15	strelka	upstream_gene_variant	MODIFIER	CR45287	intergenic	intergenic	intergenic
A573R27	2L	6825547	TA	'T'	GGGTTAAAT	INS	GGGTTAAAT	0.0769	strelka	intron_variant	MODIFIER	sens-2	intron	sens-2	FBgn0051632
A573R27	2L	7146198	TA	'T'	TATATAAAA	INS	TATATAAAA	0.114	strelka	downstream_gene_variant	MODIFIER	CR44612	intron	Pvf3	FBgn0085407
A573R27	2L	7714049	CAA	'C'	GTTCCAAAG	INS	GTTCCAAAG	0.16	strelka	3_prime_UTR_variant	MODIFIER	CG33296	3UTR	CG33296	FBgn0053296
A573R27	2L	9787132	TC	'T'	TTTTTCTTC	INS	TTTTTCTTC	0.103	strelka	upstream_gene_variant	MODIFIER	CG4036	intron	IP3K1	FBgn0032147
A573R27	2L	10263153	C	'CAGGG'	ACGCCTACC	INS	ACGCCTACC	0.111	strelka	frameshift_variant	HIGH	Rsf1	exon	Rsf1	FBgn0011305
A573R27	2L	10263155	ACCCT	'A'	GCCTACCCT	INS	GCCTACCCT	0.105	strelka	frameshift_variant	HIGH	Rsf1	exon	Rsf1	FBgn0011305
A573R27	2L	11359879	A	'ATAGTGAATAGTGAAAT'	TGACAGCAA	INS	TTGCTGTCA	0.579	strelka	intron_variant	MODIFIER	salr	intron	salr	FBgn0000287
A573R27	2L	11704647	TA	'T'	CATGTAAAA	INS	CATGTAAAA	0.114	strelka	intergenic_region	MODIFIER	CG4988-CR44143	intergenic	intergenic	intergenic
A573R27	2L	12590320	A	'AATCAC'	CAATAGAAT	INS	ATTCTATTG	0.429	strelka	intron_variant	MODIFIER	nub	intron	nub	FBgn0085424
A573R27	2L	15405696	AT	'A'	GAGGATTTT	INS	GAGGATTTT	0.087	strelka	intergenic_region	MODIFIER	CR45374-CG44869	intergenic	intergenic	intergenic
A573R27	2L	16133620	TA	'T'	AAACTAAAA	INS	AAACTAAAA	0.129	strelka	5_prime_UTR_variant	MODIFIER	CG4892	5UTR	CG4892	FBgn0028884
A573R27	2L	16253514	G	'GA'	TGCCGAAAA	INS	TTTTCGGCA	0.0893	strelka	upstream_gene_variant	MODIFIER	EndoGI	intron	PRL-1	FBgn0024734
A573R27	2L	16352942	TC	'T'	TCCGTCCCT	INS	TCCGTCCCT	0.0667	strelka	5_prime_UTR_variant	MODIFIER	CG4455	5UTR	CG4455	FBgn0028506
A573R27	2L	16534292	GTC	'G'	CTCTGTCTC	INS	CTCTGTCTC	0.0784	strelka	upstream_gene_variant	MODIFIER	CG5953	exon_1	CR45354	FBgn0266894
A573R27	2L	16873624	G	'GT'	AGCTGTTTT	INS	AAAACAGCT	0.19	strelka	downstream_gene_variant	MODIFIER	CG32832	ncRNA	CR31781	FBgn0051781
A573R27	2L	18327719	ACT	'A'	CTTTACTTT	INS	CTTTACTTT	0.08	mutect2	intron_variant	MODIFIER	Fas3	intron	Fas3	FBgn0000636
A573R27	2L	18603056	AT	'A'	AAAGATTTT	INS	AAAGATTTT	0.1	strelka	upstream_gene_variant	MODIFIER	CG31789	intron	CG10413	FBgn0032689
A573R27	2L	20004573	ACTGG	'A'	ACTGACTGG	INS	ACTGACTGG	0.0492	mutect2	upstream_gene_variant	MODIFIER	CR44908	intron	CG43861	FBgn0264443
A573R27	2L	21683884	TA	'T'	ACATTAAAA	INS	ACATTAAAA	0.093	strelka	upstream_gene_variant	MODIFIER	EF2	intergenic	intergenic	intergenic
A573R27	2R	1089493	GT	'G'	GTCCGTCTT	INS	GTCCGTCTT	0.0615	strelka	intron_variant	MODIFIER	rl	intron	rl	FBgn0003256
A573R27	2R	3096921	ACAGTTCAAATT	'A'	GTAAACAGT	INS	GTAAACAGT	0.308	mutect2,strelka	intron_variant	MODIFIER	CG42596	intron	dpr21	FBgn0260995
A573R27	2R	3283484	A	'AT'	GGGTATTTT	INS	AAAATACCC	0.128	strelka	intergenic_region	MODIFIER	CG42596-CR41243	intergenic	intergenic	intergenic
A573R27	2R	4024154	CT	'C'	GTCCCTTTT	INS	GTCCCTTTT	0.0595	strelka	intron_variant	MODIFIER	Haspin	intron	Haspin	FBgn0046706
A573R27	2R	11399702	A	'ACATGAAAATCG'	TTTCACAGT	INS	ACTGTGAAA	0.172	strelka	upstream_gene_variant	MODIFIER	sprt	intergenic	intergenic	intergenic
A573R27	2R	13936012	ATAT	'A'	CCAAATATT	INS	CCAAATATT	0.381	strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
A573R27	2R	14405976	AAT	'A'	GTACAATAT	INS	GTACAATAT	0.0833	mutect2	upstream_gene_variant	MODIFIER	CR44369	intergenic	intergenic	intergenic
A573R27	2R	14694461	TA	'T'	AATATAAAA	INS	AATATAAAA	0.118	strelka	intron_variant	MODIFIER	mspo	intron	mspo	FBgn0020269
A573R27	2R	17567488	T	'TG'	TTTTTGGGC	INS	TTTTTGGGC	0.0714	strelka	frameshift_variant	HIGH	Ns2	exon_2	Ns2	FBgn0034243
A573R27	2R	18184076	CCA	'C'	CTTCCCACA	INS	CTTCCCACA	0.0755	strelka	5_prime_UTR_variant	MODIFIER	CG5721	5UTR	CG5721	FBgn0034315
A573R27	2R	18311891	AAGC	'A'	CGAGAAGCA	INS	CGAGAAGCA	0.08	strelka	disruptive_inframe_deletion	MODERATE	Tango8	exon	Tango8	FBgn0040737
A573R27	2R	18526320	T	'TA'	GTATTAAAA	INS	GTATTAAAA	0.0833	strelka	3_prime_UTR_variant	MODIFIER	CG43066	3UTR	CG43066	FBgn0262476
A573R27	2R	18876893	C	'CT'	TTGTCTTTT	INS	TTGTCTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	sano	intergenic	intergenic	intergenic
A573R27	2R	21022566	C	'CCCCA'	CTCCCCCCC	INS	CTCCCCCCC	0.118	strelka	upstream_gene_variant	MODIFIER	CG9350	intron	RIC-3	FBgn0050296
A573R27	2R	21224750	GA	'G'	ACAGGAAAA	INS	ACAGGAAAA	0.0488	strelka	upstream_gene_variant	MODIFIER	ASPP	intron	ASPP	FBgn0034606
A573R27	2R	21270555	T	'TGGGCGTCTGGGGCGTCTG'	GAGATGGGC	INS	GAGATGGGC	0.265	strelka	upstream_gene_variant	MODIFIER	CG30391	intron	Rgk3	FBgn0085426
A573R27	2R	21457513	C	'CTT'	ATTTCCTTT	INS	ATTTCCTTT	0.32	strelka	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
A573R27	2R	23019202	T	'TCC'	TTTTTTCCC	INS	TTTTTTCCC	0.194	strelka	intron_variant	MODIFIER	CG42741	intron	CG42741	FBgn0261705
A573R27	3L	1994325	G	'GA'	GAGTGTATA	INS	TATACACTC	0.423	strelka	intergenic_region	MODIFIER	CG1139-CG42841	intergenic	intergenic	intergenic
A573R27	3L	2184691	GA	'G'	GCTAGAAAA	INS	GCTAGAAAA	0.171	strelka	upstream_gene_variant	MODIFIER	CG13810	intergenic	intergenic	intergenic
A573R27	3L	8158852	AATTTTTAAGCT	'A'	TAACAATTT	INS	TAACAATTT	0.22	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG42445	exon_1	CG42445	FBgn0259916
A573R27	3L	8690021	GA	'G'	TGTCGAAAA	INS	TGTCGAAAA	0.128	strelka	upstream_gene_variant	MODIFIER	CR44526	intergenic	intergenic	intergenic
A573R27	3L	9548934	TAC	'T'	AACATACAC	INS	AACATACAC	0.17	strelka	upstream_gene_variant	MODIFIER	Ir67a	intron	CG42673	FBgn0261555
A573R27	3L	9872009	T	'TTTAC'	TTTTTCAAT	INS	TTTTTCAAT	0.0645	strelka	upstream_gene_variant	MODIFIER	CR45406	intergenic	intergenic	intergenic
A573R27	3L	10248863	A	'AT'	CTTGATTTT	INS	AAAATCAAG	0.133	strelka	upstream_gene_variant	MODIFIER	Or67c	intergenic	intergenic	intergenic
A573R27	3L	10290679	GA	'G'	GCAGGAAAA	INS	GCAGGAAAA	0.1	strelka	non_coding_transcript_exon_variant	MODIFIER	CR46003	exon_1	CR46003	FBgn0267665
A573R27	3L	10451332	CT	'C'	AAGACTTTT	INS	AAGACTTTT	0.121	strelka	intergenic_region	MODIFIER	Ir67c-Gem3	intergenic	intergenic	intergenic
A573R27	3L	11303415	C	'CTTCCCCA'	TCCCCACCC	INS	TCCCCACCC	0.158	strelka	intergenic_region	MODIFIER	CG6175-CG7573	intergenic	intergenic	intergenic
A573R27	3L	11595703	GT	'G'	GCCCGTTTT	INS	GCCCGTTTT	0.235	strelka	upstream_gene_variant	MODIFIER	CG33268	intergenic	intergenic	intergenic
A573R27	3L	13356874	CA	'C'	ATATCAAAA	INS	ATATCAAAA	0.295	strelka	downstream_gene_variant	MODIFIER	CG17687	intron	Nplp2	FBgn0040813
A573R27	3L	14956104	CA	'C'	CAACCAAAA	INS	CAACCAAAA	0.114	strelka	intergenic_region	MODIFIER	CR45978-Tom	intergenic	intergenic	intergenic
A573R27	3L	17659776	GAAACCCACGGCAAGATCTAAATCA	'G'	TAGCGAAAC	INS	TAGCGAAAC	0.312	strelka	downstream_gene_variant	MODIFIER	CG7484	intergenic	intergenic	intergenic
A573R27	3L	20907693	T	'TG'	TGGTTGAAA	INS	TGGTTGAAA	0.0741	strelka	downstream_gene_variant	MODIFIER	CG11458	intergenic	intergenic	intergenic
A573R27	3L	21385262	CT	'C'	GTTTCTTTT	INS	GTTTCTTTT	0.161	strelka	intron_variant	MODIFIER	rgn	intron	rgn	FBgn0261258
A573R27	3L	21397521	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.0862	strelka	upstream_gene_variant	MODIFIER	CR45953	intron	rgn	FBgn0261258
A573R27	3L	21782311	G	'GTTTACCTCCCTACCT'	AACAGTTAC	INS	GTAACTGTT	0.207	strelka	intergenic_region	MODIFIER	CR45958-eg	intergenic	intergenic	intergenic
A573R27	3L	22626863	AT	'A'	GGTAATTTT	INS	GGTAATTTT	0.0645	mutect2	intron_variant	MODIFIER	CG14459	intron	CG14459	FBgn0037171
A573R27	3L	22677014	A	'AT'	GTTTATTTG	INS	CAAATAAAC	0.0784	strelka	intron_variant	MODIFIER	CG14457	intron	CG14457	FBgn0037174
A573R27	3L	24748880	CA	'C'	ATAACAAAA	INS	ATAACAAAA	0.114	strelka	intron_variant	MODIFIER	scro	intron	scro	FBgn0028993
A573R27	3L	25766534	CATT	'C'	TTCACATTA	INS	TTCACATTA	0.111	strelka	upstream_gene_variant	MODIFIER	CG17374	intergenic	intergenic	intergenic
A573R27	3R	932603	ATT	'A'	CAGCATTTT	INS	CAGCATTTT	0.333	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A573R27	3R	4578835	AT	'A'	TTTGATTTT	INS	TTTGATTTT	0.133	strelka	upstream_gene_variant	MODIFIER	CG32945	intergenic	intergenic	intergenic
A573R27	3R	4759675	C	'CT'	TCCCCTTTT	INS	TCCCCTTTT	0.0909	strelka	intron_variant	MODIFIER	CG44098	intron	CG44098	FBgn0264907
A573R27	3R	5957615	TA	'T'	CCACTAAAA	INS	CCACTAAAA	0.103	strelka	downstream_gene_variant	MODIFIER	CG11373	intron	CG34113	FBgn0083949
A573R27	3R	7780901	AT	'A'	GTTTATTTT	INS	GTTTATTTT	0.0725	strelka	3_prime_UTR_variant	MODIFIER	CG18747	3UTR	CG18747	FBgn0042104
A573R27	3R	9595089	G	'GT'	ACTGGTTTT	INS	AAAACCAGT	0.122	strelka	upstream_gene_variant	MODIFIER	bocksbeutel	intron	CG8312	FBgn0037720
A573R27	3R	10905805	G	'GT'	TGCTGTTTT	INS	AAAACAGCA	0.122	strelka	intergenic_region	MODIFIER	CR45578-Tengl4	intergenic	intergenic	intergenic
A573R27	3R	11189352	ATG	'A'	CTGCATGTG	INS	CTGCATGTG	0.103	strelka	intergenic_region	MODIFIER	Ugt86Dh-CG18577	intergenic	intergenic	intergenic
A573R27	3R	12849908	CCA	'C'	CTCCCCACA	INS	CTCCCCACA	0.111	strelka	upstream_gene_variant	MODIFIER	beat-Va	intergenic	intergenic	intergenic
A573R27	3R	12892438	GT	'G'	ATTTGTTTT	INS	ATTTGTTTT	0.195	strelka	downstream_gene_variant	MODIFIER	CR33929	intron	d-cup	FBgn0038089
A573R27	3R	15527009	T	'TG'	TTTATGGAC	INS	TTTATGGAC	0.115	strelka	downstream_gene_variant	MODIFIER	CG31296	intergenic	intergenic	intergenic
A573R27	3R	15725586	GT	'G'	ATGGGTTTT	INS	ATGGGTTTT	0.0833	strelka	intergenic_region	MODIFIER	CG31294-CG34274	intergenic	intergenic	intergenic
A573R27	3R	17900048	TTG	'T'	GCAATTGTG	INS	GCAATTGTG	0.136	strelka	intron_variant	MODIFIER	Rim	intron	Rim	FBgn0053547
A573R27	3R	18129558	TC	'T'	TTTTTCTTT	INS	TTTTTCTTT	0.0385	mutect2	intron_variant	MODIFIER	sr	intron	sr	FBgn0003499
A573R27	3R	18445371	GT	'G'	TTTTGTTTT	INS	TTTTGTTTT	0.174	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
A573R27	3R	18621178	GT	'G'	TTGGGTTTT	INS	TTGGGTTTT	0.162	strelka	upstream_gene_variant	MODIFIER	CG7695	intron	CG14304	FBgn0038629
A573R27	3R	18911070	CT	'C'	GTTACTTTT	INS	GTTACTTTT	0.231	strelka	3_prime_UTR_variant	MODIFIER	CG14291	3UTR	CG14291	FBgn0038660
A573R27	3R	19407534	C	'CA'	TATCCAAAA	INS	TATCCAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	Ino80	intergenic	intergenic	intergenic
A573R27	3R	19603657	C	'CAAGTTCTTTCAACGCT'	GCAACAATA	INS	GCAACAATA	0.348	strelka	upstream_gene_variant	MODIFIER	Cpr92A	intron	CG7342	FBgn0038716
A573R27	3R	19940092	A	'ACGACCACAGCGCACCAATTCG'	GCCCAATAA	INS	TTATTGGGC	0.172	strelka	upstream_gene_variant	MODIFIER	mira	intron	Hs6st	FBgn0038755
A573R27	3R	24607911	A	'AAT'	GCAGAAAAA	INS	TTTTTCTGC	0.0816	strelka	downstream_gene_variant	MODIFIER	CR46095	intron	mld	FBgn0263490
A573R27	3R	26385772	GA	'G'	GCCGGAAAA	INS	GCCGGAAAA	0.087	strelka	intergenic_region	MODIFIER	CG33970-ppk15	intergenic	intergenic	intergenic
A573R27	3R	27107158	T	'TA'	GTCATAAAA	INS	GTCATAAAA	0.395	strelka	upstream_gene_variant	MODIFIER	CG6074	intergenic	intergenic	intergenic
A573R27	3R	30857395	C	'CTTTTTGGCAAAAAAAG'	AGTACTTTT	INS	AGTACTTTT	0.213	mutect2,strelka	downstream_gene_variant	MODIFIER	tll	intergenic	intergenic	intergenic
A573R27	3R	30903615	GA	'G'	CACTGAAAA	INS	CACTGAAAA	0.121	strelka	upstream_gene_variant	MODIFIER	CG33483	intergenic	intergenic	intergenic
A573R27	3R	31324916	GA	'G'	GAACGAAAA	INS	GAACGAAAA	0.121	strelka	intron_variant	MODIFIER	CG34347	intron	CG34347	FBgn0085376
A573R27	3R	31996853	ACCGTT	'A'	TACAACCGT	INS	TACAACCGT	0.222	strelka	upstream_gene_variant	MODIFIER	heph	intron	heph	FBgn0011224
A573R27	4	851125	CA	'C'	TGGCCAAAA	INS	TGGCCAAAA	0.0645	strelka	upstream_gene_variant	MODIFIER	CR45123	intergenic	intergenic	intergenic
A573R27	X	992178	CGT	'C'	TGAGCGTGT	INS	TGAGCGTGT	0.148	strelka	downstream_gene_variant	MODIFIER	CG18823	intergenic	intergenic	intergenic
A573R27	X	1247265	TTGC	'T'	GCTGTTGCT	INS	GCTGTTGCT	0.148	strelka	disruptive_inframe_deletion	MODERATE	Atf3	exon	Atf3	FBgn0028550
A573R27	X	1585785	CTG	'C'	GTGTCTGTG	INS	GTGTCTGTG	0.238	strelka	intron_variant	MODIFIER	Mur2B	intron	br	FBgn0283451
A573R27	X	2507299	T	'TA'	GCCTTAAAA	INS	GCCTTAAAA	0.182	strelka	upstream_gene_variant	MODIFIER	trol	intron	trol	FBgn0267911
A573R27	X	2529276	G	'GA'	AGAAGAAAA	INS	TTTTCTTCT	0.182	strelka	intron_variant	MODIFIER	trol	intron	trol	FBgn0267911
A573R27	X	4081494	TTA	'T'	TTCTTTATA	INS	TTCTTTATA	0.25	strelka	intron_variant	MODIFIER	CG43689	intron	CG43689	FBgn0263772
A573R27	X	4236614	TA	'T'	CGGCTAAAA	INS	CGGCTAAAA	0.211	strelka	intergenic_region	MODIFIER	CG15570-Femcoat	intergenic	intergenic	intergenic
A573R27	X	4249185	TA	'T'	GGAGTAAAA	INS	GGAGTAAAA	0.132	strelka	upstream_gene_variant	MODIFIER	Muc4B	intergenic	intergenic	intergenic
A573R27	X	4646685	CGT	'C'	TGTCCGTGT	INS	TGTCCGTGT	0.1	strelka	upstream_gene_variant	MODIFIER	CG3062	intron	HLH4C	FBgn0011277
A573R27	X	4725469	AAC	'A'	AAAAAACAA	INS	AAAAAACAA	0.154	mutect2	intron_variant	MODIFIER	Proc-R	intron	Proc-R	FBgn0029723
A573R27	X	4804816	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.222	strelka	5_prime_UTR_variant	MODIFIER	CG2861	exon_1	CG2861	FBgn0029728
A573R27	X	4906455	G	'GA'	CTACGAAAA	INS	TTTTCGTAG	0.231	strelka	3_prime_UTR_variant	MODIFIER	CG42594	exon_8	CG42594	FBgn0260971
A573R27	X	6388264	CCA	'C'	GTCACCACA	INS	GTCACCACA	0.156	strelka	downstream_gene_variant	MODIFIER	CG33664	intergenic	intergenic	intergenic
A573R27	X	6626000	AC	'A'	CACAACCCC	INS	CACAACCCC	0.25	strelka	intron_variant	MODIFIER	pigs	intron	pigs	FBgn0029881
A573R27	X	7036373	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	CG14427	intron	CG12541	FBgn0029930
A573R27	X	7060916	C	'CA'	ACAACAAAA	INS	ACAACAAAA	0.133	strelka	intron_variant	MODIFIER	CG12541	intron	CG12541	FBgn0029930
A573R27	X	7077686	G	'GA'	GACAGAAAA	INS	TTTTCTGTC	0.344	strelka	3_prime_UTR_variant	MODIFIER	Sxl	3UTR	Sxl	FBgn0264270
A573R27	X	7689869	TTGC	'T'	ACTGTTGCT	INS	ACTGTTGCT	0.15	strelka	conservative_inframe_deletion	MODERATE	CHES-1-like	exon_2	CHES-1-like	FBgn0029504
A573R27	X	8389937	GT	'G'	AACGGTTTT	INS	AACGGTTTT	0.179	strelka	downstream_gene_variant	MODIFIER	CG1387	intergenic	intergenic	intergenic
A573R27	X	8783267	A	'AAT'	AAAAATAAA	INS	TTTATTTTT	0.182	strelka	intron_variant	MODIFIER	Lim1	intron	Lim1	FBgn0026411
A573R27	X	9243263	CT	'C'	CTTTCTTTT	INS	CTTTCTTTT	0.143	strelka	5_prime_UTR_variant	MODIFIER	mxc	5UTR	mxc	FBgn0260789
A573R27	X	9693872	AAG	'A'	GCGAAAGAG	INS	GCGAAAGAG	0.13	strelka	upstream_gene_variant	MODIFIER	CR44016	intergenic	intergenic	intergenic
A573R27	X	9931450	T	'TA'	TGAGTAAAA	INS	TGAGTAAAA	0.222	strelka	upstream_gene_variant	MODIFIER	Idgf4	intergenic	intergenic	intergenic
A573R27	X	10345342	A	'ACACACACG'	TGCGACACA	INS	TGTGTCGCA	0.176	strelka	upstream_gene_variant	MODIFIER	snoRNA:U3:9B	intron	CG43740	FBgn0263997
A573R27	X	10361320	CT	'C'	CATCCTTTT	INS	CATCCTTTT	0.16	strelka	intron_variant	MODIFIER	l(1)G0289	intron	l(1)G0289	FBgn0028331
A573R27	X	10575899	GTTGTTT	'G'	TGTTGTTGT	INS	TGTTGTTGT	0.105	mutect2	disruptive_inframe_deletion	MODERATE	spri	exon_3	spri	FBgn0085443
A573R27	X	10694708	CCT	'C'	TGCTCCTCT	INS	TGCTCCTCT	0.2	strelka	intron_variant	MODIFIER	X11Lbeta	intron	X11Lbeta	FBgn0052677
A573R27	X	11176170	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.148	strelka	intergenic_region	MODIFIER	CG1394-CG15200	intergenic	intergenic	intergenic
A573R27	X	11434566	AGT	'A'	GTTGAGTGT	INS	GTTGAGTGT	0.111	strelka	3_prime_UTR_variant	MODIFIER	Evi5	exon_8	Evi5	FBgn0262740
A573R27	X	12065437	CTT	'C'	CCAACTTTT	INS	CCAACTTTT	0.308	strelka	upstream_gene_variant	MODIFIER	CG34323	intron	Ten-a	FBgn0267001
A573R27	X	12518029	CA	'C'	AGACCAAAA	INS	AGACCAAAA	0.156	strelka	3_prime_UTR_variant	MODIFIER	CG43921	3UTR	CG43921	FBgn0264542
A573R27	X	12582734	CT	'C'	TCTCCTTTT	INS	TCTCCTTTT	0.222	strelka	5_prime_UTR_variant	MODIFIER	CG11138	5UTR	CG11138	FBgn0030400
A573R27	X	13001837	CT	'C'	AGTTCTTTT	INS	AGTTCTTTT	0.143	strelka	downstream_gene_variant	MODIFIER	CG15719	intron	rad	FBgn0265597
A573R27	X	13025314	C	'CA'	CAGACAAAA	INS	CAGACAAAA	0.172	strelka	downstream_gene_variant	MODIFIER	CG2209	intron	rad	FBgn0265597
A573R27	X	13371199	GCA	'G'	ATTCGCACA	INS	ATTCGCACA	0.13	strelka	splice_region_variant	LOW	CG1640	exon_1	CG1640	FBgn0030478
A573R27	X	13512275	GCA	'G'	CACCGCACA	INS	CACCGCACA	0.125	strelka	intron_variant	MODIFIER	Neto	intron	Neto	FBgn0265416
A573R27	X	13747308	GCT	'G'	TTTCGCTCT	INS	TTTCGCTCT	0.15	strelka	upstream_gene_variant	MODIFIER	Grip91	intron	Pdcd4	FBgn0030520
A573R27	X	13945135	TA	'T'	TTAGTAAAA	INS	TTAGTAAAA	0.16	strelka	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
A573R27	X	14503247	ATTT	'A'	TTTTATTTT	INS	TTTTATTTT	0.25	strelka	intergenic_region	MODIFIER	CG12540-CR44110	intergenic	intergenic	intergenic
A573R27	X	15539594	GGGT	'G'	TTTGGGGTG	INS	TTTGGGGTG	0.167	strelka	5_prime_UTR_variant	MODIFIER	Ac13E	5UTR	Ac13E	FBgn0022710
A573R27	X	15819923	CA	'C'	ACGCCAAAA	INS	ACGCCAAAA	0.12	strelka	intron_variant	MODIFIER	sd	intron	sd	FBgn0003345
A573R27	X	16102868	AT	'A'	TATTATTTT	INS	TATTATTTT	0.148	strelka	5_prime_UTR_variant	MODIFIER	CG42354	exon_2	CG42354	FBgn0259700
A573R27	X	16638119	GGA	'G'	CGAGGGAGA	INS	CGAGGGAGA	0.1	strelka	5_prime_UTR_variant	MODIFIER	RpS19a	5UTR	RpS19a	FBgn0010412
A573R27	X	18347975	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.182	strelka	intron_variant	MODIFIER	CG6123	intron	CG6123	FBgn0030913
A573R27	X	18371498	TAC	'T'	CGCGTACAC	INS	CGCGTACAC	0.125	strelka	5_prime_UTR_variant	MODIFIER	CrebB	exon_1	CrebB	FBgn0265784
A573R27	X	21204705	TG	'T'	TATTTGGGG	INS	TATTTGGGG	0.192	strelka	upstream_gene_variant	MODIFIER	CG1724	intergenic	intergenic	intergenic
A573R27	X	21488825	AAAG	'A'	GCGGAAAGA	INS	GCGGAAAGA	0.143	mutect2,strelka	intergenic_region	MODIFIER	CR45511-CR45082	intergenic	intergenic	intergenic
A573R27	X	22476927	T	'TA'	CTAATAAAA	INS	CTAATAAAA	0.519	mutect2,strelka	upstream_gene_variant	MODIFIER	CG14613	intron	CG12576	FBgn0031190
A573R27	X	23013172	C	'CA'	AAAACAAAA	INS	AAAACAAAA	0.143	strelka	5_prime_UTR_variant	MODIFIER	Rab21	5UTR	Rab21	FBgn0039966
A573R27	Y	3623671	CACATGTATGAAA	'C'	TATGCACAT	INS	TATGCACAT	0.138	strelka	intergenic_region	MODIFIER	Ory-Ccy	intergenic	intergenic	intergenic
A573R29	2L	3701157	TA	'T'	ATATTAAAA	INS	ATATTAAAA	0.261	strelka	upstream_gene_variant	MODIFIER	CG16712	intergenic	intergenic	intergenic
A573R29	2L	4193847	CA	'C'	ATCACAAAA	INS	ATCACAAAA	0.0732	strelka	downstream_gene_variant	MODIFIER	lectin-24Db	intron	CG3714	FBgn0031589
A573R29	2L	6400113	CAACAAA	'C'	ACAACAACA	INS	ACAACAACA	0.0312	mutect2	upstream_gene_variant	MODIFIER	CG42369	intron	DIP-epsilon	FBgn0259714
A573R29	2L	7081748	A	'AAAT'	AGTAAAAAT	INS	ATTTTTACT	0.105	strelka	upstream_gene_variant	MODIFIER	CR44611	intron	Pvf2	FBgn0031888
A573R29	2L	7081755	AAAGAAAACTATTTTTTTTTTTCAAGCCAACG	'A'	ATAAAAAGA	INS	ATAAAAAGA	0.111	strelka	upstream_gene_variant	MODIFIER	CR44611	intron	Pvf2	FBgn0031888
A573R29	2L	7644572	C	'CG'	AATGCGGAA	INS	AATGCGGAA	0.0606	strelka	frameshift_variant	HIGH	Slob	exon	Slob	FBgn0264087
A573R29	2L	7663077	GA	'G'	AATCGAAAA	INS	AATCGAAAA	0.0862	strelka	upstream_gene_variant	MODIFIER	Myo28B1	intron	Slob	FBgn0264087
A573R29	2L	9565509	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.18	strelka	upstream_gene_variant	MODIFIER	CG3838	intron	jp	FBgn0032129
A573R29	2L	10789934	A	'ATTAATCAGCATGAGTT'	AATAAGGTG	INS	CACCTTATT	0.229	strelka	upstream_gene_variant	MODIFIER	CR44582	intron	CG31869	FBgn0051869
A573R29	2L	11063697	AAAT	'A'	GGAAAAATA	INS	GGAAAAATA	0.143	strelka	intron_variant	MODIFIER	Samuel	intron	Samuel	FBgn0032330
A573R29	2L	12466569	TG	'T'	TATCTGTTT	INS	TATCTGTTT	0.0909	strelka	intron_variant	MODIFIER	bun	intron	bun	FBgn0259176
A573R29	2L	12590305	CCGGGGGTAAA	'C'	TTCACCGGG	INS	TTCACCGGG	0.222	strelka	intron_variant	MODIFIER	nub	intron	nub	FBgn0085424
A573R29	2L	12590320	A	'AATCAC'	CAATAGAAT	INS	ATTCTATTG	0.25	strelka	intron_variant	MODIFIER	nub	intron	nub	FBgn0085424
A573R29	2L	12960242	AAGC	'A'	CGGCAAGCA	INS	CGGCAAGCA	0.0667	strelka	intergenic_region	MODIFIER	CR44183-CG16800	intergenic	intergenic	intergenic
A573R29	2L	13522211	TG	'T'	TTTTTGATG	INS	TTTTTGATG	0.16	strelka	intron_variant	MODIFIER	B4	intron	B4	FBgn0023407
A573R29	2L	13979529	A	'ATTCG'	GCATATGTA	INS	TACATATGC	0.182	strelka	3_prime_UTR_variant	MODIFIER	Cyp28a5	3UTR	Cyp28a5	FBgn0028940
A573R29	2L	13988352	AAAAACAAATTG	'A'	CTTTAAAAA	INS	CTTTAAAAA	0.136	strelka	intron_variant	MODIFIER	rk	intron	rk	FBgn0003255
A573R29	2L	14084544	CA	'C'	CACACAAAA	INS	CACACAAAA	0.133	strelka	intron_variant	MODIFIER	nAChRalpha5	intron	nAChRalpha5	FBgn0028875
A573R29	2L	14300781	TAC	'T'	ACTCTACAC	INS	ACTCTACAC	0.127	strelka	upstream_gene_variant	MODIFIER	wb	intron	wb	FBgn0261563
A573R29	2L	15172341	AAAT	'A'	AAAAAAATG	INS	AAAAAAATG	0.0656	mutect2	intron_variant	MODIFIER	CG4168	intron	CG4168	FBgn0028888
A573R29	2L	16523912	C	'CTTAAAATCGA'	GGTACTTAA	INS	GGTACTTAA	0.188	strelka	upstream_gene_variant	MODIFIER	CG5953	intron	CG5953	FBgn0032587
A573R29	2L	16547786	GACTTAAACTAAGTAA	'G'	ATAGGACTT	INS	ATAGGACTT	0.185	strelka	downstream_gene_variant	MODIFIER	CG31816	intron	CG42389	FBgn0259735
A573R29	2L	16874140	A	'AT'	AGCAATTTT	INS	AAAATTGCT	0.117	strelka	downstream_gene_variant	MODIFIER	CG32832	ncRNA	CR31781	FBgn0051781
A573R29	2L	18265334	TCTACCGTA	'T'	TTTTTCTAC	INS	TTTTTCTAC	0.174	strelka	upstream_gene_variant	MODIFIER	CR44901	intron	CG42750	FBgn0261804
A573R29	2L	18265345	C	'CATTTTAAA'	TAATCGATG	INS	TAATCGATG	0.16	strelka	upstream_gene_variant	MODIFIER	CR44901	intron	CG42750	FBgn0261804
A573R29	2L	18571570	GT	'G'	CCCAGTTTT	INS	CCCAGTTTT	0.0847	strelka	5_prime_UTR_variant	MODIFIER	Pde11	exon_1	Pde11	FBgn0085370
A573R29	2L	19793719	GGT	'G'	ATGCGGTGT	INS	ATGCGGTGT	0.0833	strelka	3_prime_UTR_variant	MODIFIER	fs(2)ltoPP43	3UTR	fs(2)ltoPP43	FBgn0004811
A573R29	2L	21225271	C	'CA'	TCCGCAAAA	INS	TCCGCAAAA	0.061	strelka	frameshift_variant	HIGH	CG8677	exon_4	CG8677	FBgn0026577
A573R29	2L	22666117	G	'GC'	TATTGTTTC	INS	GAAACAATA	0.0694	strelka	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
A573R29	2R	1645508	C	'CA'	TCCTCAAAA	INS	TCCTCAAAA	0.377	strelka	upstream_gene_variant	MODIFIER	CG41520	intergenic	intergenic	intergenic
A573R29	2R	1691100	G	'GT'	GCCAGTTTT	INS	AAAACTGGC	0.119	strelka	intron_variant	MODIFIER	CG41520	intron	CG41520	FBgn0087011
A573R29	2R	2514350	GA	'G'	TTATGAAAA	INS	TTATGAAAA	0.0685	strelka	intron_variant	MODIFIER	MFS17	intron	MFS17	FBgn0058263
A573R29	2R	6566531	CA	'C'	AACCCAAAA	INS	AACCCAAAA	0.0533	strelka	intron_variant	MODIFIER	jing	intron	jing	FBgn0086655
A573R29	2R	10090085	CAA	'C'	CACACAAAC	INS	CACACAAAC	0.038	mutect2	upstream_gene_variant	MODIFIER	sut4	intron	CG2269	FBgn0033484
A573R29	2R	12439327	C	'CAGCGGGGATCGG'	AAATCAGGT	INS	AAATCAGGT	0.217	strelka	upstream_gene_variant	MODIFIER	DUBAI	intron	Dyb	FBgn0033739
A573R29	2R	13623108	A	'ACT'	ATATATACG	INS	CGTATATAT	0.0862	mutect2	5_prime_UTR_variant	MODIFIER	fas	exon_1	fas	FBgn0000633
A573R29	2R	13929547	TTC	'T'	GTATTTCAC	INS	GTATTTCAC	0.129	strelka	upstream_gene_variant	MODIFIER	shot	intron	shot	FBgn0013733
A573R29	2R	14078152	T	'TAAAAACCAACACGAAGCCA'	CAAATGGTT	INS	CAAATGGTT	0.2	strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
A573R29	2R	14078154	G	'GATACAC'	AATGGTTGG	INS	CCAACCATT	0.167	strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
A573R29	2R	14983666	TG	'T'	GATTTGTTT	INS	GATTTGTTT	0.0563	strelka	downstream_gene_variant	MODIFIER	ckn	intron	pcs	FBgn0033988
A573R29	2R	16665637	CA	'C'	ATTACAAAA	INS	ATTACAAAA	0.172	strelka	upstream_gene_variant	MODIFIER	CG34457	intron	Picot	FBgn0024315
A573R29	2R	16871166	T	'TC'	AATCTGCAC	INS	AATCTGCAC	0.179	strelka	upstream_gene_variant	MODIFIER	Psi	intron	CG6426	FBgn0034162
A573R29	2R	18293557	ATTTGCAAGGGTACGAT	'A'	GAATATTTG	INS	GAATATTTG	0.121	strelka	5_prime_UTR_variant	MODIFIER	CG14502	5UTR	CG14502	FBgn0034321
A573R29	2R	19063008	AATTTGT	'A'	CCATAATTT	INS	CCATAATTT	0.122	strelka	upstream_gene_variant	MODIFIER	5-HT1A	intergenic	intergenic	intergenic
A573R29	2R	21441461	C	'CAG'	CACACACAC	INS	CACACACAC	0	consensus	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
A573R29	2R	21917049	A	'ACAGGAAAAAGCAAGC'	GAAAACAGA	INS	TCTGTTTTC	0.333	strelka	intron_variant	MODIFIER	Fili	intron	Fili	FBgn0085397
A573R29	2R	23001352	CACAA	'C'	CACACACAA	INS	CACACACAA	0.0476	mutect2	upstream_gene_variant	MODIFIER	CG9896	intron	twi	FBgn0003900
A573R29	3L	6520206	C	'CTT'	ATTTCTTCT	INS	ATTTCTTCT	0.175	strelka	intron_variant	MODIFIER	sfl	intron	sfl	FBgn0020251
A573R29	3L	6929668	TTA	'T'	ACGTTTAAA	INS	ACGTTTAAA	0.0714	strelka	upstream_gene_variant	MODIFIER	CG14820	intergenic	intergenic	intergenic
A573R29	3L	9216989	C	'CTACCACTCCTGT'	CGCACTCCT	INS	CGCACTCCT	0.162	strelka	downstream_gene_variant	MODIFIER	CG4476	intergenic	intergenic	intergenic
A573R29	3L	9832069	C	'CA'	CAACCAACA	INS	CAACCAACA	0.0325	strelka	3_prime_UTR_variant	MODIFIER	CG43897	exon_4	CG43897	FBgn0264489
A573R29	3L	10052444	ATGTATGT	'A'	AATGATGTA	INS	AATGATGTA	0.179	strelka	downstream_gene_variant	MODIFIER	CR45878	intron	dpr6	FBgn0040823
A573R29	3L	10363443	C	'CCAACAATAACAACAAGGAACAG'	ACGACCAAC	INS	ACGACCAAC	0.25	strelka	upstream_gene_variant	MODIFIER	mir-276a	exon_3	CR46006	FBgn0267668
A573R29	3L	10424192	C	'CCA'	TCGCCCAGA	INS	TCGCCCAGA	0.0656	strelka	intergenic_region	MODIFIER	CG12362-Ir67b	intergenic	intergenic	intergenic
A573R29	3L	10654176	AAAAAAGCTGCTGAAAACTTTGCGCCATTGCACTTT	'A'	GAAAAAAAA	INS	GAAAAAAAA	0.306	strelka	intron_variant	MODIFIER	CG32066	intron	CG32066	FBgn0052066
A573R29	3L	10995048	TG	'T'	TTTGTGTTT	INS	TTTGTGTTT	0.115	strelka	intron_variant	MODIFIER	klu	intron	klu	FBgn0013469
A573R29	3L	11035432	G	'GT'	TTGTGTTTT	INS	AAAACACAA	0.0806	mutect2	downstream_gene_variant	MODIFIER	CG43693	ncRNA	CR44547	FBgn0265740
A573R29	3L	11109484	T	'TTTTTATAATGGTAATGC'	CAGATTTCA	INS	CAGATTTCA	0.8	mutect2	5_prime_UTR_variant	MODIFIER	CG34012	5UTR	CG34012	FBgn0054012
A573R29	3L	12551257	ATATGTACAATATGTATG	'A'	ATACATATG	INS	ATACATATG	0.237	strelka	intron_variant	MODIFIER	sowah	intron	sowah	FBgn0036302
A573R29	3L	13113526	TC	'T'	CATCTCAAA	INS	CATCTCAAA	0.0769	strelka	upstream_gene_variant	MODIFIER	trn	intergenic	intergenic	intergenic
A573R29	3L	13177401	CT	'C'	CACTCTGAG	INS	CACTCTGAG	0.0571	strelka	downstream_gene_variant	MODIFIER	snky	intergenic	intergenic	intergenic
A573R29	3L	13677726	A	'AAAAAAAGTATAAGAGACCACATTT'	CCCAAAAAA	INS	TTTTTTGGG	0.093	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A573R29	3L	14024818	G	'GC'	TGTTGTTGT	INS	ACAACAACA	0	consensus	frameshift_variant	HIGH	ptip	exon_4	Ptip	FBgn0052133
A573R29	3L	15658202	T	'TTATTTATATTA'	TAGTTATTT	INS	TAGTTATTT	0.237	strelka	upstream_gene_variant	MODIFIER	Eig71Ee	intergenic	intergenic	intergenic
A573R29	3L	18161906	CGCA	'C'	ATATCGCAT	INS	ATATCGCAT	0.143	strelka	intron_variant	MODIFIER	CG13699	intron	CG13699	FBgn0036781
A573R29	3L	19918384	AT	'A'	CTGGATTTT	INS	CTGGATTTT	0.0746	strelka	3_prime_UTR_variant	MODIFIER	Su(z)12	3UTR	Su(z)12	FBgn0020887
A573R29	3L	20628503	GA	'G'	AATAGAAAA	INS	AATAGAAAA	0.212	strelka	upstream_gene_variant	MODIFIER	CR44684	intergenic	intergenic	intergenic
A573R29	3L	24868434	ACT	'A'	TTCAACTCT	INS	TTCAACTCT	0.0641	strelka	intergenic_region	MODIFIER	scro-CG40472	intergenic	intergenic	intergenic
A573R29	3R	1847770	C	'CA'	AGCGCAAAA	INS	AGCGCAAAA	0.0889	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A573R29	3R	3030920	CT	'C'	ATATCTTTT	INS	ATATCTTTT	0.211	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
A573R29	3R	3374183	TAC	'T'	GATGTACCA	INS	GATGTACCA	0.0921	strelka	intergenic_region	MODIFIER	spok-Parp	intergenic	intergenic	intergenic
A573R29	3R	3374191	A	'AGG'	AAAAATTAT	INS	ATAATTTTT	0.0909	strelka	intergenic_region	MODIFIER	spok-Parp	intergenic	intergenic	intergenic
A573R29	3R	3580398	CA	'C'	AATACAAAA	INS	AATACAAAA	0.082	strelka	intron_variant	MODIFIER	Parp	intron	Parp	FBgn0010247
A573R29	3R	7412139	G	'GT'	CGCCGTACT	INS	AGTACGGCG	0.115	strelka	downstream_gene_variant	MODIFIER	Ir84a	intergenic	intergenic	intergenic
A573R29	3R	10593529	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.0952	strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
A573R29	3R	11853452	CA	'C'	AACCCAAAA	INS	AACCCAAAA	0.0633	strelka	intron_variant	MODIFIER	CG6959	intron	CG6959	FBgn0037956
A573R29	3R	13056636	CA	'C'	GTAGCAAAA	INS	GTAGCAAAA	0.13	strelka	3_prime_UTR_variant	MODIFIER	pic	3UTR	pic	FBgn0260962
A573R29	3R	14709862	AG	'A'	AAAAAGAAA	INS	AAAAAGAAA	0.093	strelka	intron_variant	MODIFIER	kibra	intron	kibra	FBgn0262127
A573R29	3R	15175298	GT	'G'	TAGGGTTTT	INS	TAGGGTTTT	0.0952	strelka	downstream_gene_variant	MODIFIER	Mf	intron	Mf	FBgn0038294
A573R29	3R	17715220	TA	'T'	AAAATAAAA	INS	AAAATAAAA	0.0962	strelka	upstream_gene_variant	MODIFIER	Pxt	intron	osa	FBgn0261885
A573R29	3R	17920650	A	'AACT'	GACAAAATA	INS	TATTTTGTC	0.0784	strelka	5_prime_UTR_variant	MODIFIER	cpo	exon_1	cpo	FBgn0263995
A573R29	3R	18232693	T	'TTGGATAGCAAGA'	TAGTTACTA	INS	TAGTTACTA	0.244	strelka	upstream_gene_variant	MODIFIER	repo	intergenic	intergenic	intergenic
A573R29	3R	19290537	A	'AT'	TGGAACTTT	INS	AAAGTTCCA	0.0755	strelka	downstream_gene_variant	MODIFIER	CR43451	intergenic	intergenic	intergenic
A573R29	3R	19978782	G	'GACACAACGAGA'	GAGAGGGAC	INS	GTCCCTCTC	0	consensus	frameshift_variant	HIGH	CG31213	exon	CG31213	FBgn0051213
A573R29	3R	19978784	G	'GC'	GAGGGACAA	INS	TTGTCCCTC	0	consensus	frameshift_variant	HIGH	CG31213	exon	CG31213	FBgn0051213
A573R29	3R	21557981	G	'GA'	GAACGAAAA	INS	TTTTCGTTC	0.104	strelka	upstream_gene_variant	MODIFIER	slou	intergenic	intergenic	intergenic
A573R29	3R	22075738	GAT	'G'	ATCAGATAT	INS	ATCAGATAT	0.043	mutect2	upstream_gene_variant	MODIFIER	CG13408	intron	how	FBgn0264491
A573R29	3R	23650431	AAGCACTAC	'A'	TAAAAAGCA	INS	TAAAAAGCA	0.273	strelka	intron_variant	MODIFIER	CG31145	intron	CG31145	FBgn0051145
A573R29	3R	24396803	CTG	'C'	ATTGCTGTG	INS	ATTGCTGTG	0.103	strelka	3_prime_UTR_variant	MODIFIER	nAChRalpha1	3UTR	nAChRalpha1	FBgn0000036
A573R29	3R	25166179	A	'AT'	ATACAATGA	INS	TCATTGTAT	0.0909	strelka	downstream_gene_variant	MODIFIER	lobo	intergenic	intergenic	intergenic
A573R29	3R	26304779	G	'GTTGAAAACATTAGGCATA'	AATTGTTAA	INS	TTAACAATT	0.303	strelka	intergenic_region	MODIFIER	CG6154-CG33970	intergenic	intergenic	intergenic
A573R29	3R	26433839	T	'TTAATGTTGC'	GTTGTTGTT	INS	GTTGTTGTT	0.0833	strelka	downstream_gene_variant	MODIFIER	CR43434	intergenic	intergenic	intergenic
A573R29	3R	29651998	C	'CA'	GGCGCAAAA	INS	GGCGCAAAA	0.238	strelka	intron_variant	MODIFIER	Dop1R2	intron	Dop1R2	FBgn0266137
A573R29	3R	30555752	CA	'C'	AGAGCAAAA	INS	AGAGCAAAA	0.17	strelka	3_prime_UTR_variant	MODIFIER	CG34155	3UTR	CG34155	FBgn0083991
A573R29	4	277263	GT	'G'	ATACGTTTT	INS	ATACGTTTT	0.0598	strelka	upstream_gene_variant	MODIFIER	NfI	exon_1	CR44023	FBgn0264793
A573R29	X	995127	TA	'T'	AGATTAAAA	INS	AGATTAAAA	0.182	strelka	downstream_gene_variant	MODIFIER	CG18823	intergenic	intergenic	intergenic
A573R29	X	1825283	G	'GT'	CGTGGTTTT	INS	AAAACCACG	0.143	strelka	5_prime_UTR_variant	MODIFIER	CG42666	5UTR	CG42666	FBgn0261548
A573R29	X	2336466	GGA	'G'	AGAGGGAGA	INS	AGAGGGAGA	0.125	strelka	upstream_gene_variant	MODIFIER	Ilp6	intron	Raf	FBgn0003079
A573R29	X	2340587	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.107	strelka	5_prime_UTR_variant	MODIFIER	phl	5UTR	Raf	FBgn0003079
A573R29	X	2442056	A	'AT'	CAGGATTCA	INS	TGAATCCTG	0.167	strelka	downstream_gene_variant	MODIFIER	tko	intergenic	intergenic	intergenic
A573R29	X	2538342	GA	'G'	CGTAGAAAA	INS	CGTAGAAAA	0.148	strelka	intron_variant	MODIFIER	trol	intron	trol	FBgn0267911
A573R29	X	2674814	ACAG	'A'	AAGAACAGC	INS	AAGAACAGC	0.267	strelka	3_prime_UTR_variant	MODIFIER	sgg	exon_12	sgg	FBgn0003371
A573R29	X	2741049	GT	'G'	CAGTGTTTT	INS	CAGTGTTTT	0.182	strelka	upstream_gene_variant	MODIFIER	crm	intron	kirre	FBgn0028369
A573R29	X	2808978	CGAT	'C'	ATGACGATG	INS	ATGACGATG	0.0833	strelka	upstream_gene_variant	MODIFIER	CG12498	intron	kirre	FBgn0028369
A573R29	X	3832598	GA	'G'	GGCTGAAAA	INS	GGCTGAAAA	0.161	strelka	upstream_gene_variant	MODIFIER	ec	intron	ec	FBgn0000542
A573R29	X	4527182	GA	'G'	GGACGAAAA	INS	GGACGAAAA	0.167	strelka	upstream_gene_variant	MODIFIER	CG3556	ncRNA	CR32773	FBgn0052773
A573R29	X	4965754	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.129	strelka	upstream_gene_variant	MODIFIER	SIP3	ncRNA	CR44833	FBgn0266096
A573R29	X	5146232	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.222	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A573R29	X	5176352	GCAT	'G'	AGGAGCATC	INS	AGGAGCATC	0.093	strelka	disruptive_inframe_deletion	MODERATE	CG15465	exon	CG15465	FBgn0029746
A573R29	X	5212117	CA	'C'	CTACCAAAA	INS	CTACCAAAA	0.154	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A573R29	X	5442045	TTG	'T'	GCGTTTGTG	INS	GCGTTTGTG	0.156	strelka	upstream_gene_variant	MODIFIER	SPR	intergenic	intergenic	intergenic
A573R29	X	5558843	ACACATC	'A'	ACACACACA	INS	ACACACACA	0.0952	mutect2	intron_variant	MODIFIER	Vsx2	intron	Vsx2	FBgn0263512
A573R29	X	5568305	TCA	'T'	TGCATCACA	INS	TGCATCACA	0.0968	strelka	intergenic_region	MODIFIER	Vsx2-Vsx1	intergenic	intergenic	intergenic
A573R29	X	5717009	G	'GA'	AAAAGAAAA	INS	TTTTCTTTT	0.25	strelka	upstream_gene_variant	MODIFIER	CG33080	intron	CG33080	FBgn0053080
A573R29	X	6354787	GT	'G'	TTATGTTTT	INS	TTATGTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	CG3446	intron	kdn	FBgn0261955
A573R29	X	6702857	GCA	'G'	ACAGGCACA	INS	ACAGGCACA	0.103	strelka	upstream_gene_variant	MODIFIER	CG14440	intron	CG14441	FBgn0029895
A573R29	X	7044976	ATG	'A'	TCGAATGTG	INS	TCGAATGTG	0.296	strelka	upstream_gene_variant	MODIFIER	nullo	intron	CG12541	FBgn0029930
A573R29	X	7185705	CTG	'C'	CAATCTGTG	INS	CAATCTGTG	0.106	strelka	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A573R29	X	7199657	CT	'C'	GGCTCTTTT	INS	GGCTCTTTT	0.121	strelka	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A573R29	X	7608187	TA	'T'	AGAGTAAAA	INS	AGAGTAAAA	0.156	strelka	upstream_gene_variant	MODIFIER	ct	intergenic	intergenic	intergenic
A573R29	X	8276181	ACT	'A'	ACCAACTCT	INS	ACCAACTCT	0.125	strelka	splice_region_variant	LOW	CG1636	3UTR	CG1636	FBgn0030030
A573R29	X	8349826	C	'CA'	AAAACAAAA	INS	AAAACAAAA	0.125	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
A573R29	X	8853119	GT	'G'	CTTTGTTTT	INS	CTTTGTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	CG12075	intron	CG12075	FBgn0030065
A573R29	X	8969193	A	'ATCATCATCG'	CATCATCAT	INS	ATGATGATG	0.0741	mutect2	downstream_gene_variant	MODIFIER	mir-4964	intron	rdgA	FBgn0261549
A573R29	X	9513743	CAAT	'C'	CGGACAATA	INS	CGGACAATA	0.14	strelka	downstream_gene_variant	MODIFIER	CG34028	intron	CG32700	FBgn0267253
A573R29	X	9540985	AAC	'A'	GACCAACAC	INS	GACCAACAC	0.114	strelka	intron_variant	MODIFIER	CG32700	intron	CG32700	FBgn0267253
A573R29	X	9704903	AAGC	'A'	AGCCAAGCA	INS	AGCCAAGCA	0.154	strelka	intergenic_region	MODIFIER	btd-CR43498	intergenic	intergenic	intergenic
A573R29	X	10323108	GA	'G'	AGGAGAAAA	INS	AGGAGAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	CG2909	intron	alpha-Man-Ia	FBgn0259170
A573R29	X	10520042	GA	'G'	AAGTGAAAA	INS	AAGTGAAAA	0.125	strelka	intron_variant	MODIFIER	spri	intron	spri	FBgn0085443
A573R29	X	11409479	CA	'C'	TGGGCAAAA	INS	TGGGCAAAA	0.16	strelka	3_prime_UTR_variant	MODIFIER	dlg1	3UTR	dlg1	FBgn0001624
A573R29	X	11705510	GT	'G'	TTTGGTTTT	INS	TTTGGTTTT	0.364	strelka	upstream_gene_variant	MODIFIER	CG2444	intergenic	intergenic	intergenic
A573R29	X	12267667	CA	'C'	GAAACAAAA	INS	GAAACAAAA	0.154	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
A573R29	X	12838613	CGT	'C'	TCTGCGTGT	INS	TCTGCGTGT	0.108	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
A573R29	X	12888583	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.2	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
A573R29	X	13372978	TA	'T'	CCTCTAAAA	INS	CCTCTAAAA	0.129	strelka	upstream_gene_variant	MODIFIER	CG1640	intron	CG1640	FBgn0030478
A573R29	X	13375863	AT	'A'	TTCCATTTT	INS	TTCCATTTT	0.0847	strelka	downstream_gene_variant	MODIFIER	Rbp1-like	intron	CG1640	FBgn0030478
A573R29	X	13777149	G	'GA'	TTAAGAAAA	INS	TTTTCTTAA	0.129	strelka	3_prime_UTR_variant	MODIFIER	rdgB	3UTR	rdgB	FBgn0003218
A573R29	X	13844472	AAC	'A'	TGCGAACAC	INS	TGCGAACAC	0.125	strelka	upstream_gene_variant	MODIFIER	AMPdeam	intron	AMPdeam	FBgn0052626
A573R29	X	14684542	GA	'G'	ACTTGAAAA	INS	ACTTGAAAA	0.233	strelka	downstream_gene_variant	MODIFIER	CG5321	intergenic	intergenic	intergenic
A573R29	X	15403870	TGA	'T'	TGGGTGAGA	INS	TGGGTGAGA	0.156	strelka	downstream_gene_variant	MODIFIER	Cngl	intron	Cngl	FBgn0263257
A573R29	X	15756380	G	'GA'	ATACGAAAA	INS	TTTTCGTAT	0.208	strelka	5_prime_UTR_variant	MODIFIER	CG8260	5UTR	CG8260	FBgn0030684
A573R29	X	17317568	G	'GT'	TTCAGTTTT	INS	AAAACTGAA	0.182	strelka	intron_variant	MODIFIER	B-H2	intron	B-H2	FBgn0004854
A573R29	X	17627244	G	'GA'	GCTAGAAAA	INS	TTTTCTAGC	0.135	strelka	splice_region_variant&intron_variant	LOW	stas	intron	stas	FBgn0030850
A573R29	X	18651770	G	'GTGCCA'	ACTAGATGC	INS	GCATCTAGT	0.115	strelka	frameshift_variant	HIGH	Ing3	exon	Ing3	FBgn0030945
A573R29	X	19500623	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.104	strelka	upstream_gene_variant	MODIFIER	CR44340	intron	CG14200	FBgn0031023
A573R29	X	19886030	C	'CA'	AAACCCAAA	INS	AAACCCAAA	0.121	strelka	upstream_gene_variant	MODIFIER	Hers	intron	Hers	FBgn0052529
A573R29	X	21077629	GA	'G'	GCGTGAAAA	INS	GCGTGAAAA	0.154	strelka	3_prime_UTR_variant	MODIFIER	bves	3UTR	bves	FBgn0031150
A573R29	X	22751622	TA	'T'	CAATTAAAA	INS	CAATTAAAA	0.278	strelka	intron_variant	MODIFIER	CR44997	ncRNA	CR44997	FBgn0266348
A573R31	2L	340518	GT	'G'	TCCAGTTTT	INS	TCCAGTTTT	0.143	strelka	intron_variant	MODIFIER	Plc21C	intron	Plc21C	FBgn0004611
A573R31	2L	2183734	G	'GT'	AAGTGTTTT	INS	AAAACACTT	0.0984	strelka	upstream_gene_variant	MODIFIER	aop	exon_1	CR43751	FBgn0265017
A573R31	2L	3972131	TA	'T'	ACCGTAAAA	INS	ACCGTAAAA	0.0685	strelka	intron_variant	MODIFIER	fred	intron	fred	FBgn0051774
A573R31	2L	6920944	C	'CA'	TTTCCAAAA	INS	TTTCCAAAA	0.087	strelka	upstream_gene_variant	MODIFIER	x16	intron	Hrb27C	FBgn0004838
A573R31	2L	7001360	CA	'C'	ATCCCAAAA	INS	ATCCCAAAA	0.167	strelka	intron_variant	MODIFIER	uif	intron	uif	FBgn0031879
A573R31	2L	7108968	A	'AG'	CACGAGGGG	INS	CCCCTCGTG	0.217	strelka	intron_variant	MODIFIER	Pvf3	intron	Pvf3	FBgn0085407
A573R31	2L	7240909	AT	'A'	TTTGATTTT	INS	TTTGATTTT	0.0714	strelka	upstream_gene_variant	MODIFIER	Ndae1	intron	Ndae1	FBgn0259111
A573R31	2L	7746516	GT	'G'	CCACGTTTT	INS	CCACGTTTT	0.188	strelka	upstream_gene_variant	MODIFIER	Acp1	intergenic	intergenic	intergenic
A573R31	2L	7913814	GT	'G'	GGCTGTTTT	INS	GGCTGTTTT	0.16	strelka	intron_variant	MODIFIER	Snoo	intron	Snoo	FBgn0085450
A573R31	2L	9157908	CT	'C'	AGCGCTTTT	INS	AGCGCTTTT	0.15	strelka	intron_variant	MODIFIER	CG32982	intron	CG32982	FBgn0052982
A573R31	2L	9300414	CA	'C'	GGCGCAAAA	INS	GGCGCAAAA	0.154	strelka	3_prime_UTR_variant	MODIFIER	Ggamma30A	3UTR	Ggamma30A	FBgn0267252
A573R31	2L	10350259	CT	'C'	TTCTCTTTT	INS	TTCTCTTTT	0.125	strelka	downstream_gene_variant	MODIFIER	CG5022	intron	CG34367	FBgn0085396
A573R31	2L	10458127	T	'TA'	AAATTTGCC	INS	AAATTTGCC	0.0303	mutect2	upstream_gene_variant	MODIFIER	CG5322	intron	LManII	FBgn0027611
A573R31	2L	11163342	GT	'G'	AGAGGTTTT	INS	AGAGGTTTT	0.0896	mutect2,strelka	frameshift_variant	HIGH	Ca-beta	exon_6	Ca-beta	FBgn0259822
A573R31	2L	11976139	ACCCATAGGTTAACCAAAGACAT	'A'	ATATACCCA	INS	ATATACCCA	0.3	strelka	intergenic_region	MODIFIER	CR43314-CG16965	intergenic	intergenic	intergenic
A573R31	2L	11976164	AGT	'A'	ATCAAGTAA	INS	ATCAAGTAA	0.375	strelka	intergenic_region	MODIFIER	CR43314-CG16965	intergenic	intergenic	intergenic
A573R31	2L	12479444	CA	'C'	CAGCCAAAA	INS	CAGCCAAAA	0.0714	strelka	intron_variant	MODIFIER	bun	intron	bun	FBgn0259176
A573R31	2L	13556974	CG	'C'	CCCCCGAAA	INS	CCCCCGAAA	0.108	strelka	intron_variant	MODIFIER	kuz	intron	kuz	FBgn0259984
A573R31	2L	14086551	CA	'C'	TGGCCAAAA	INS	TGGCCAAAA	0.148	strelka	intron_variant	MODIFIER	nAChRalpha5	intron	nAChRalpha5	FBgn0028875
A573R31	2L	14300781	TAC	'T'	ACTCTACAC	INS	ACTCTACAC	0.1	strelka	upstream_gene_variant	MODIFIER	wb	intron	wb	FBgn0261563
A573R31	2L	14967247	GT	'G'	GAAAGTTTT	INS	GAAAGTTTT	0.118	strelka	intron_variant	MODIFIER	CG42313	intron	CG42313	FBgn0259213
A573R31	2L	15210856	AAAC	'A'	AAAAAAACT	INS	AAAAAAACT	0.286	strelka	upstream_gene_variant	MODIFIER	CG43230	intergenic	intergenic	intergenic
A573R31	2L	15521084	A	'AAC'	ATCGAAAAA	INS	TTTTTCGAT	0.0645	strelka	upstream_gene_variant	MODIFIER	CR44864	intergenic	intergenic	intergenic
A573R31	2L	16095293	CCTTTGCGA	'C'	GACGCCTTT	INS	GACGCCTTT	0.0597	strelka	frameshift_variant	HIGH	CG4891	exon	CG4891	FBgn0028520
A573R31	2L	16370370	CA	'C'	GTCCCAAAA	INS	GTCCCAAAA	0.0851	strelka	downstream_gene_variant	MODIFIER	jhamt	intergenic	intergenic	intergenic
A573R31	2L	16574439	CT	'C'	TTTACTTTT	INS	TTTACTTTT	0.0909	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
A573R31	2L	16640127	C	'CAA'	AAAGCAAAA	INS	AAAGCAAAA	0.286	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
A573R31	2L	16640144	CAATGTCTTTGAGCTG	'C'	TTTCCAATG	INS	TTTCCAATG	0.257	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
A573R31	2L	17937670	CAT	'C'	CATACATAT	INS	CATACATAT	0.2	strelka	downstream_gene_variant	MODIFIER	CR44399	intergenic	intergenic	intergenic
A573R31	2L	19631432	TA	'T'	AATTTAAAA	INS	AATTTAAAA	0.136	strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
A573R31	2R	1185243	AT	'A'	GTCAATTTT	INS	GTCAATTTT	0.0641	strelka	intergenic_region	MODIFIER	rl-CR42653	intergenic	intergenic	intergenic
A573R31	2R	3141248	CA	'C'	CTGCCAAAA	INS	CTGCCAAAA	0.0943	strelka	intron_variant	MODIFIER	CG42596	intron	dpr21	FBgn0260995
A573R31	2R	3282744	AG	'A'	GAGAAGGGT	INS	GAGAAGGGT	0.324	strelka	intergenic_region	MODIFIER	CG42596-CR41243	intergenic	intergenic	intergenic
A573R31	2R	3904637	CT	'C'	CAAGCTTTT	INS	CAAGCTTTT	0.0735	strelka	intron_variant	MODIFIER	uex	intron	uex	FBgn0262124
A573R31	2R	7384262	TA	'T'	CGCGTAAAA	INS	CGCGTAAAA	0.0851	strelka	frameshift_variant	HIGH	cos	exon	cos	FBgn0000352
A573R31	2R	9794179	A	'AT'	AACAACAAA	INS	TTTGTTGTT	0.306	strelka	5_prime_UTR_variant	MODIFIER	CG1698	5UTR	CG1698	FBgn0033443
A573R31	2R	11867800	A	'AG'	TTATATACT	INS	AGTATATAA	0.31	strelka	upstream_gene_variant	MODIFIER	TwdlBeta	intergenic	intergenic	intergenic
A573R31	2R	13431366	TCTTTTTTCTTGTTATATACATA	'T'	GTATTCTTT	INS	GTATTCTTT	0.167	strelka	upstream_gene_variant	MODIFIER	tRNA:I:49Fa	intron	CG42321	FBgn0259221
A573R31	2R	13753814	CGCA	'C'	CAGTCGCAG	INS	CAGTCGCAG	0.115	strelka	upstream_gene_variant	MODIFIER	CG6280	intergenic	intergenic	intergenic
A573R31	2R	15608097	GT	'G'	CGTTGTTTT	INS	CGTTGTTTT	0.109	strelka	intergenic_region	MODIFIER	CG8204-CG42524	intergenic	intergenic	intergenic
A573R31	2R	16078735	GT	'G'	GTTTGTTCC	INS	GTTTGTTCC	0.0656	strelka	downstream_gene_variant	MODIFIER	Dg	exon_1	CR43415	FBgn0263334
A573R31	2R	16558783	TG	'T'	TTTTTGGAC	INS	TTTTTGGAC	0.104	strelka	3_prime_UTR_variant	MODIFIER	DAT	3UTR	DAT	FBgn0034136
A573R31	2R	18497130	A	'AT'	CGTTATATT	INS	AATATAACG	0.123	strelka	intron_variant	MODIFIER	CG30116	intron	CG30116	FBgn0028496
A573R31	2R	19293202	GCT	'G'	TTTTGCTCT	INS	TTTTGCTCT	0.103	strelka	upstream_gene_variant	MODIFIER	mip40	intron	Tab2	FBgn0086358
A573R31	2R	19330104	GA	'G'	CGCAGAAAA	INS	CGCAGAAAA	0.0741	strelka	upstream_gene_variant	MODIFIER	CG34045	intron	Rgk1	FBgn0264753
A573R31	2R	21249914	TGAC	'T'	GCGATGACG	INS	GCGATGACG	0.0952	strelka	intron_variant	MODIFIER	ASPP	intron	ASPP	FBgn0034606
A573R31	2R	21587258	CA	'C'	ACTTCAAAA	INS	ACTTCAAAA	0.156	strelka	upstream_gene_variant	MODIFIER	CG33225	intergenic	intergenic	intergenic
A573R31	2R	21898059	CACAGA	'C'	CCCCCACAG	INS	CCCCCACAG	0.127	strelka	intron_variant	MODIFIER	Fili	intron	Fili	FBgn0085397
A573R31	2R	22538851	AT	'A'	AAAAATAAT	INS	AAAAATAAT	0.0727	strelka	intron_variant	MODIFIER	px	intron	px	FBgn0003175
A573R31	2R	23510185	T	'TG'	GGAGTGGTT	INS	GGAGTGGTT	0.0781	strelka	upstream_gene_variant	MODIFIER	CR43794	intergenic	intergenic	intergenic
A573R31	2R	25210880	A	'ATATATTATTATATT'	TTAAAAGCG	INS	CGCTTTTAA	0.286	strelka	intron_variant	MODIFIER	CG9380	intron	CG9380	FBgn0035094
A573R31	2R	25210881	AGCGCTC	'A'	TAAAAGCGC	INS	TAAAAGCGC	0.286	strelka	intron_variant	MODIFIER	CG9380	intron	CG9380	FBgn0035094
A573R31	3L	1761324	A	'AAC'	CTTCAACAC	INS	GTGTTGAAG	0.0635	strelka	frameshift_variant	HIGH	Dhc62B	exon_7	Dhc62B	FBgn0013811
A573R31	3L	3613338	TTTAATGATG	'T'	ACTCTTTAA	INS	ACTCTTTAA	0.261	strelka	upstream_gene_variant	MODIFIER	CG10357	intron	CG10359	FBgn0035452
A573R31	3L	4531311	GT	'G'	TGGTGTTTT	INS	TGGTGTTTT	0.127	strelka	upstream_gene_variant	MODIFIER	CG11353	intron	Tie	FBgn0014073
A573R31	3L	7186346	CA	'C'	CCACCAAAA	INS	CCACCAAAA	0.125	strelka	intron_variant	MODIFIER	Dscam2	intron	Dscam2	FBgn0265296
A573R31	3L	7981820	CT	'C'	TCTGCTTTT	INS	TCTGCTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	CG8038	intron	nmo	FBgn0011817
A573R31	3L	8557904	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.231	strelka	upstream_gene_variant	MODIFIER	rhea	intron	rhea	FBgn0260442
A573R31	3L	9588488	G	'GCAAAAAAAAAAA'	AAGGGCAAA	INS	TTTGCCCTT	0.222	strelka	intron_variant	MODIFIER	CG42673	intron	CG42673	FBgn0261555
A573R31	3L	9681330	CA	'C'	CGACCAAAA	INS	CGACCAAAA	0.0816	strelka	5_prime_UTR_variant	MODIFIER	alphaTub67C	5UTR	alphaTub67C	FBgn0087040
A573R31	3L	10229007	G	'GT'	TCTCGTTTT	INS	AAAACGAGA	0.0877	strelka	upstream_gene_variant	MODIFIER	scramb1	intergenic	intergenic	intergenic
A573R31	3L	10304124	C	'CT'	TTTCCTTTT	INS	TTTCCTTTT	0.267	strelka	upstream_gene_variant	MODIFIER	CR46004	exon_1	CR46003	FBgn0267665
A573R31	3L	11275401	AG	'A'	ATCAAGGGG	INS	ATCAAGGGG	0.282	strelka	upstream_gene_variant	MODIFIER	CR44720	intergenic	intergenic	intergenic
A573R31	3L	13243387	T	'TTTTTTG'	CCGTTTTTT	INS	CCGTTTTTT	0.0976	strelka	downstream_gene_variant	MODIFIER	CG32119	intron	caps	FBgn0023095
A573R31	3L	13674007	CA	'C'	TTTGCAAAA	INS	TTTGCAAAA	0.172	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A573R31	3L	14906569	AT	'A'	GGATATTTT	INS	GGATATTTT	0.0746	strelka	intron_variant	MODIFIER	DCX-EMAP	intron	DCX-EMAP	FBgn0259099
A573R31	3L	17471894	GA	'G'	ATCGGAAAA	INS	ATCGGAAAA	0.0714	strelka	upstream_gene_variant	MODIFIER	CG7580	intron	CG7589	FBgn0036727
A573R31	3L	17500643	CAA	'C'	CACACAAAC	INS	CACACAAAC	0.0571	mutect2	intron_variant	MODIFIER	Oatp74D	intron	Oatp74D	FBgn0036732
A573R31	3L	18785101	G	'GT'	GTGTGTTTT	INS	AAAACACAC	0.0806	strelka	intron_variant	MODIFIER	ftz-f1	ncRNA	CR45939	FBgn0267601
A573R31	3L	20585012	GT	'G'	ACCCGTTTT	INS	ACCCGTTTT	0.0676	strelka	intergenic_region	MODIFIER	Rcd2-knrl	intergenic	intergenic	intergenic
A573R31	3L	20648292	CT	'C'	AATACTTTT	INS	AATACTTTT	0.133	strelka	upstream_gene_variant	MODIFIER	CR44685	intergenic	intergenic	intergenic
A573R31	3L	20933752	AAGC	'A'	CGACAAGCA	INS	CGACAAGCA	0.08	strelka	downstream_gene_variant	MODIFIER	CG10589	intron	fng	FBgn0011591
A573R31	3L	21043323	GT	'G'	GATTGTTTT	INS	GATTGTTTT	0.0778	strelka	upstream_gene_variant	MODIFIER	siz	intron	siz	FBgn0026179
A573R31	3L	21877153	CT	'C'	CCCCCTTTT	INS	CCCCCTTTT	0.113	strelka	upstream_gene_variant	MODIFIER	mub	intron	mub	FBgn0262737
A573R31	3L	22980362	CT	'C'	GTCGCTTTT	INS	GTCGCTTTT	0.114	strelka	intergenic_region	MODIFIER	CR45758-CG32457	intergenic	intergenic	intergenic
A573R31	3L	24252510	CTGCCTATTATGT	'C'	ATTTCTGCC	INS	ATTTCTGCC	0.0882	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A573R31	3L	25453940	CA	'C'	ATAGCAAAA	INS	ATAGCAAAA	0.0984	strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
A573R31	3R	2109779	TC	'T'	TACTTCCCC	INS	TACTTCCCC	0.152	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A573R31	3R	2502429	AC	'A'	AAAAACCAC	INS	AAAAACCAC	0.237	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
A573R31	3R	5547488	GCA	'G'	TGCCGCACA	INS	TGCCGCACA	0.0533	strelka	5_prime_UTR_variant	MODIFIER	CG2519	exon_1	CG2519	FBgn0037336
A573R31	3R	7647965	AAC	'A'	GAACAACAA	INS	GAACAACAA	0.105	strelka	intergenic_region	MODIFIER	CG34127-Nlg1	intergenic	intergenic	intergenic
A573R31	3R	8463040	AC	'A'	CGTGACCCC	INS	CGTGACCCC	0.0769	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
A573R31	3R	9611944	AATTGCACAATGTCT	'A'	TGTAAATTG	INS	TGTAAATTG	0.179	strelka	intron_variant	MODIFIER	CG8312	intron	CG8312	FBgn0037720
A573R31	3R	9997391	CA	'C'	ATCGCAAAA	INS	ATCGCAAAA	0.0769	mutect2	5_prime_UTR_variant	MODIFIER	Spn85F	5UTR	Spn85F	FBgn0037772
A573R31	3R	12449050	TTC	'T'	TCTTTTCTC	INS	TCTTTTCTC	0.111	strelka	upstream_gene_variant	MODIFIER	CG18549	intergenic	intergenic	intergenic
A573R31	3R	12914005	AT	'A'	GGATATTTT	INS	GGATATTTT	0.161	strelka	upstream_gene_variant	MODIFIER	CG10909	intergenic	intergenic	intergenic
A573R31	3R	13497314	C	'CT'	TCTGCTTTT	INS	TCTGCTTTT	0.123	strelka	intergenic_region	MODIFIER	CR45589-CG12538	intergenic	intergenic	intergenic
A573R31	3R	13920436	CA	'C'	ATGCCAAAA	INS	ATGCCAAAA	0.109	strelka	intergenic_region	MODIFIER	ems-Art9	intergenic	intergenic	intergenic
A573R31	3R	13953850	GA	'G'	AAGAGAAAA	INS	AAGAGAAAA	0.152	strelka	upstream_gene_variant	MODIFIER	CG9926	intergenic	intergenic	intergenic
A573R31	3R	15020446	G	'GT'	TTTAGTTTT	INS	AAAACTAAA	0.109	strelka	downstream_gene_variant	MODIFIER	CG14861	intergenic	intergenic	intergenic
A573R31	3R	16253157	CT	'C'	TCGACTTTT	INS	TCGACTTTT	0.115	strelka	intron_variant	MODIFIER	tara	intron	tara	FBgn0040071
A573R31	3R	17608584	CT	'C'	TTTGCTTTT	INS	TTTGCTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	CG14329	intergenic	intergenic	intergenic
A573R31	3R	19208777	AGACTTAC	'A'	AGAGAGACT	INS	AGAGAGACT	0.421	strelka	upstream_gene_variant	MODIFIER	cry	intergenic	intergenic	intergenic
A573R31	3R	19473874	TA	'T'	AATTTAAAA	INS	AATTTAAAA	0.182	strelka	upstream_gene_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
A573R31	3R	19512976	C	'CA'	CAAGCAAAA	INS	CAAGCAAAA	0.121	strelka	intron_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
A573R31	3R	20673137	A	'AATAAGTTCATCTT'	TTGGAATTG	INS	CAATTCCAA	0.417	strelka	upstream_gene_variant	MODIFIER	CR45024	intergenic	intergenic	intergenic
A573R31	3R	20673141	GA	'G'	AATTGAAAA	INS	AATTGAAAA	0.417	strelka	upstream_gene_variant	MODIFIER	CR45024	intergenic	intergenic	intergenic
A573R31	3R	22706415	CA	'C'	ATACCAAAA	INS	ATACCAAAA	0.08	strelka	splice_region_variant&intron_variant	LOW	CG13842	intron	CG13842	FBgn0039009
A573R31	3R	22914857	T	'TTTTTTTGGGGGC'	TTTTTTTGG	INS	TTTTTTTGG	0.167	strelka	intron_variant	MODIFIER	klg	intron	klg	FBgn0017590
A573R31	3R	23319651	GGGTC	'G'	GGAAGGGTC	INS	GGAAGGGTC	0.143	strelka	intron_variant	MODIFIER	pnt	intron	pnt	FBgn0003118
A573R31	3R	24266605	GA	'G'	TAACGAAAA	INS	TAACGAAAA	0.0702	strelka	upstream_gene_variant	MODIFIER	jar	intron	jar	FBgn0011225
A573R31	3R	24729333	C	'CTT'	TCTGCGGGT	INS	TCTGCGGGT	0.188	strelka	intron_variant	MODIFIER	tok	intron	tok	FBgn0004885
A573R31	3R	24778351	TA	'T'	AAAATAAAA	INS	AAAATAAAA	0.261	strelka	upstream_gene_variant	MODIFIER	CG42331	intron	CG42331	FBgn0259233
A573R31	3R	25521441	CA	'C'	CAAGCAAAA	INS	CAAGCAAAA	0.0847	strelka	intron_variant	MODIFIER	msi	intron	msi	FBgn0011666
A573R31	3R	25584543	GC	'G'	ATTCGCCCC	INS	ATTCGCCCC	0.0606	mutect2	5_prime_UTR_variant	MODIFIER	msi	exon_2	msi	FBgn0011666
A573R31	3R	26592794	G	'GA'	GAGTGAAAA	INS	TTTTCACTC	0.167	strelka	downstream_gene_variant	MODIFIER	scrib	intron	scrib	FBgn0263289
A573R31	3R	26886947	C	'CA'	AAAACAAAA	INS	AAAACAAAA	0.163	strelka	intron_variant	MODIFIER	T48	intron	T48	FBgn0004359
A573R31	3R	28002406	C	'CA'	CCCCCCGAA	INS	CCCCCCGAA	0.129	strelka	upstream_gene_variant	MODIFIER	CR46087	intergenic	intergenic	intergenic
A573R31	3R	28811264	GA	'G'	GATCGAAAA	INS	GATCGAAAA	0.0678	strelka	5_prime_UTR_variant	MODIFIER	wdn	5UTR	wdn	FBgn0005642
A573R31	3R	29181527	C	'CTGCTGG'	GGTGCTGCT	INS	GGTGCTGCT	0.0656	strelka	conservative_inframe_insertion	MODERATE	CG14509	exon_2	CG14509	FBgn0039647
A573R31	3R	30043943	GGAC	'G'	AGGAGGACG	INS	AGGAGGACG	0.061	strelka	disruptive_inframe_deletion	MODERATE	Sry-delta	exon	Sry-delta	FBgn0003512
A573R31	3R	30264391	G	'GAAATAACAGAAATAATAATAA'	GACAGAAAT	INS	ATTTCTGTC	0.226	strelka	intergenic_region	MODIFIER	CG18404-CR46113	intergenic	intergenic	intergenic
A573R31	3R	30624230	C	'CA'	TATTCAAAC	INS	TATTCAAAC	0.321	strelka	upstream_gene_variant	MODIFIER	CG44954	intergenic	intergenic	intergenic
A573R31	3R	30624237	AAATAT	'A'	ACAGAAATA	INS	ACAGAAATA	0.321	strelka	upstream_gene_variant	MODIFIER	CG44954	intergenic	intergenic	intergenic
A573R31	3R	30771963	GA	'G'	TTCTGAAAA	INS	TTCTGAAAA	0.152	strelka	intron_variant	MODIFIER	zfh1	intron	zfh1	FBgn0004606
A573R31	4	1100020	CA	'C'	AAGACAAAA	INS	AAGACAAAA	0.111	strelka	intron_variant	MODIFIER	sv	intron	sv	FBgn0005561
A573R31	X	1115104	GT	'G'	TTTTGTTTT	INS	TTTTGTTTT	0.129	strelka	intron_variant	MODIFIER	CG3655	intron	CG3655	FBgn0040397
A573R31	X	1332067	GGGT	'G'	GAGGGGGTG	INS	GAGGGGGTG	0.0952	strelka	conservative_inframe_deletion	MODERATE	CG11409	exon	CG11409	FBgn0024366
A573R31	X	1714791	TCTG	'T'	TGCTTCTGC	INS	TGCTTCTGC	0.0976	strelka	upstream_gene_variant	MODIFIER	CG3795	intergenic	intergenic	intergenic
A573R31	X	2598604	TA	'T'	AGGTTAAAA	INS	AGGTTAAAA	0.182	strelka	3_prime_UTR_variant	MODIFIER	egh	3UTR	egh	FBgn0001404
A573R31	X	2642616	TTC	'T'	AATATTCTC	INS	AATATTCTC	0.136	strelka	upstream_gene_variant	MODIFIER	sgg	intron	sgg	FBgn0003371
A573R31	X	2882726	CTGT	'C'	TCGCCTGTT	INS	TCGCCTGTT	0.111	strelka	disruptive_inframe_deletion	MODERATE	CG14418	exon	CG14418	FBgn0040354
A573R31	X	2986281	G	'GA'	CACAGAAAA	INS	TTTTCTGTG	0.133	strelka	upstream_gene_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A573R31	X	3125426	AGT	'A'	TGCAAGTGT	INS	TGCAAGTGT	0.156	strelka	upstream_gene_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A573R31	X	3452253	TA	'T'	AATGTAAAA	INS	AATGTAAAA	0.122	strelka	upstream_gene_variant	MODIFIER	CG12535	ncRNA	CR44999	FBgn0266350
A573R31	X	3746988	CTGT	'C'	GCCTCTGTT	INS	GCCTCTGTT	0.0976	strelka	upstream_gene_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
A573R31	X	3764325	TA	'T'	CCACTAAAA	INS	CCACTAAAA	0.105	strelka	intron_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
A573R31	X	4697423	G	'GT'	CAGTGTTTT	INS	AAAACACTG	0.129	strelka	upstream_gene_variant	MODIFIER	l(1)G0334	intron	ctp	FBgn0011760
A573R31	X	4937163	CA	'C'	ATCACAAAA	INS	ATCACAAAA	0.108	strelka	upstream_gene_variant	MODIFIER	Ptp4E	intron	CG44774	FBgn0266000
A573R31	X	5233302	TAC	'T'	CACATACAC	INS	CACATACAC	0.125	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
A573R31	X	5847199	GT	'G'	GATGGTTTT	INS	GATGGTTTT	0.109	strelka	downstream_gene_variant	MODIFIER	CG12729	intergenic	intergenic	intergenic
A573R31	X	7036336	CA	'C'	TTGCCAAAA	INS	TTGCCAAAA	0.133	strelka	upstream_gene_variant	MODIFIER	CG14427	intron	CG12541	FBgn0029930
A573R31	X	7231581	AAAC	'A'	ATAAAAACA	INS	ATAAAAACA	0.152	mutect2	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
A573R31	X	8396591	GT	'G'	ATGGGTTTT	INS	ATGGGTTTT	0.154	strelka	upstream_gene_variant	MODIFIER	CG10555	intergenic	intergenic	intergenic
A573R31	X	9689899	AT	'A'	AGAGATGAC	INS	AGAGATGAC	0.0976	strelka	upstream_gene_variant	MODIFIER	nej	intergenic	intergenic	intergenic
A573R31	X	9702734	C	'CA'	AATACAAAA	INS	AATACAAAA	0.208	strelka	intergenic_region	MODIFIER	btd-CR43498	intergenic	intergenic	intergenic
A573R31	X	10392666	CTG	'C'	GGCACTGTG	INS	GGCACTGTG	0.24	strelka	intron_variant	MODIFIER	flw	intron	flw	FBgn0000711
A573R31	X	10667484	AGT	'A'	GTAAAGTGT	INS	GTAAAGTGT	0.24	strelka	downstream_gene_variant	MODIFIER	CG12637	intron	X11Lbeta	FBgn0052677
A573R31	X	10824527	CCA	'C'	CAGCCCACA	INS	CAGCCCACA	0.176	strelka	upstream_gene_variant	MODIFIER	Imp	exon_1	CR45624	FBgn0267184
A573R31	X	11297391	CA	'C'	AAAGCAAAA	INS	AAAGCAAAA	0.167	strelka	upstream_gene_variant	MODIFIER	CG44422	intron	CG44422	FBgn0265595
A573R31	X	11908901	G	'GC'	GCTGGCTGA	INS	TCAGCCAGC	0.129	strelka	frameshift_variant	HIGH	pot	exon_6	pot	FBgn0250871
A573R31	X	11908907	CG	'C'	TGATCGGGC	INS	TGATCGGGC	0.129	strelka	frameshift_variant	HIGH	pot	exon_6	pot	FBgn0250871
A573R31	X	11957298	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.128	strelka	intron_variant	MODIFIER	cac	intron	cac	FBgn0263111
A573R31	X	12488518	C	'CA'	TTTACAAAA	INS	TTTACAAAA	0.429	strelka	upstream_gene_variant	MODIFIER	Lsp1alpha	intron	Cpr11A	FBgn0030394
A573R31	X	12836387	CTG	'C'	AAATCTGTG	INS	AAATCTGTG	0.22	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
A573R31	X	12993400	GCA	'G'	AGCAGCACA	INS	AGCAGCACA	0.156	strelka	intron_variant	MODIFIER	rad	intron	rad	FBgn0265597
A573R31	X	13128580	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.128	strelka	5_prime_UTR_variant	MODIFIER	CG32638	5UTR	CG32638	FBgn0052638
A573R31	X	13839193	GT	'G'	ACAGGTTTT	INS	ACAGGTTTT	0.152	strelka	upstream_gene_variant	MODIFIER	AMPdeam	intron	AMPdeam	FBgn0052626
A573R31	X	14255079	GT	'G'	AATCGTTTT	INS	AATCGTTTT	0.171	strelka	frameshift_variant	HIGH	mud	exon	mud	FBgn0002873
A573R31	X	14312550	AT	'A'	TGGTATTTT	INS	TGGTATTTT	0.273	strelka	downstream_gene_variant	MODIFIER	betaNACtes2	intergenic	intergenic	intergenic
A573R31	X	15156945	CT	'C'	TGGGCTTTT	INS	TGGGCTTTT	0.133	strelka	intron_variant	MODIFIER	CG9095	intron	CG9095	FBgn0030617
A573R31	X	15345515	GGA	'G'	ACCGGGAGA	INS	ACCGGGAGA	0.105	strelka	frameshift_variant	HIGH	CG6227	exon_2	CG6227	FBgn0030631
A573R31	X	15403870	TGA	'T'	TGGGTGAGA	INS	TGGGTGAGA	0.182	strelka	downstream_gene_variant	MODIFIER	Cngl	intron	Cngl	FBgn0263257
A573R31	X	15615729	GTC	'G'	CGACGTCTC	INS	CGACGTCTC	0.176	strelka	intron_variant	MODIFIER	sog	intron	sog	FBgn0003463
A573R31	X	16780483	G	'GCT'	GCCCGCTCT	INS	AGAGCGGGC	0.16	strelka	upstream_gene_variant	MODIFIER	mRpL22	intron	if	FBgn0001250
A573R31	X	17029358	G	'GA'	CTGAGAAAA	INS	TTTTCTCAG	0.152	strelka	intron_variant	MODIFIER	CG45002	intron	CG45002	FBgn0266354
A573R31	X	17076556	A	'AT'	AACTATTTT	INS	AAAATAGTT	0.154	strelka	upstream_gene_variant	MODIFIER	CG8949	intron	wcy	FBgn0030812
A573R31	X	17077053	CGCT	'C'	CTTCCGCTG	INS	CTTCCGCTG	0.143	strelka	5_prime_UTR_variant	MODIFIER	CG8949	5UTR	wcy	FBgn0030812
A573R31	X	17975574	CT	'C'	CTCCCTTTT	INS	CTCCCTTTT	0.146	strelka	intron_variant	MODIFIER	Sh	intron	Sh	FBgn0003380
A573R31	X	18930962	AAC	'A'	GCAGAACAC	INS	GCAGAACAC	0.139	strelka	5_prime_UTR_variant	MODIFIER	CG43759	exon_1	CG43759	FBgn0264090
A573R31	X	19242389	AT	'A'	GCGAATTTT	INS	GCGAATTTT	0.455	strelka	upstream_gene_variant	MODIFIER	CG14196	intergenic	intergenic	intergenic
A573R31	X	20586200	GA	'G'	CATCGAAAA	INS	CATCGAAAA	0.0909	strelka	downstream_gene_variant	MODIFIER	RunxA	intergenic	intergenic	intergenic
A573R31	X	21418314	TAC	'T'	TACATACAC	INS	TACATACAC	0.0976	strelka	downstream_gene_variant	MODIFIER	CG42343	intergenic	intergenic	intergenic
A573R31	X	22692764	AT	'A'	AAAAATAAA	INS	AAAAATAAA	0.138	mutect2	intron_variant	MODIFIER	CR44997	ncRNA	CR44997	FBgn0266348
A573R31	Y	921018	ATGTATT	'A'	TTTAATGTA	INS	TTTAATGTA	0.156	strelka	upstream_gene_variant	MODIFIER	Su(Ste):CR42430	intergenic	intergenic	intergenic
A573R33	2L	885646	T	'TAAGCATTTTTC'	TTCCTAATG	INS	TTCCTAATG	0.222	strelka	upstream_gene_variant	MODIFIER	CG15824	intergenic	intergenic	intergenic
A573R33	2L	2521453	A	'AATTTAAATCAACCATT'	TATGAATAT	INS	ATATTCATA	0.172	strelka	upstream_gene_variant	MODIFIER	CG3528	intergenic	intergenic	intergenic
A573R33	2L	3339203	GCA	'G'	GCGCGCACA	INS	GCGCGCACA	0.0847	strelka	downstream_gene_variant	MODIFIER	CG15408	intron	E23	FBgn0020445
A573R33	2L	8631921	TTGG	'T'	TTTTTTGGT	INS	TTTTTTGGT	0.0526	mutect2	intron_variant	MODIFIER	Sema-1a	intron	Sema-1a	FBgn0011259
A573R33	2L	8825801	TTCGCA	'T'	TCGTTTCGC	INS	TCGTTTCGC	0.0615	strelka	5_prime_UTR_variant	MODIFIER	SoxN	5UTR	SoxN	FBgn0029123
A573R33	2L	10124111	GCCA	'G'	CATCGCCAC	INS	CATCGCCAC	0.19	strelka	upstream_gene_variant	MODIFIER	CG13135	intron	CG34109	FBgn0083945
A573R33	2L	10612600	GA	'G'	CGGGGAAAC	INS	CGGGGAAAC	0.0526	strelka	intron_variant	MODIFIER	Trim9	intron	Trim9	FBgn0051721
A573R33	2L	11232052	CAA	'C'	CACACAAAC	INS	CACACAAAC	0.069	strelka	upstream_gene_variant	MODIFIER	snoRNA:Me18S-G642	intron	ab	FBgn0264442
A573R33	2L	11722890	CT	'C'	CCTCCTTTT	INS	CCTCCTTTT	0.087	strelka	downstream_gene_variant	MODIFIER	CR44143	intergenic	intergenic	intergenic
A573R33	2L	13952204	AGAAAACGATCACACTGGTCAAAATAATAT	'A'	ATTCAGAAA	INS	ATTCAGAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG16884	intron	Ance-3	FBgn0032536
A573R33	2L	14508111	C	'CA'	TAGCCAAAA	INS	TAGCCAAAA	0.093	strelka	downstream_gene_variant	MODIFIER	CR45693	intergenic	intergenic	intergenic
A573R33	2L	16614333	C	'CAAAA'	TCAGCAATA	INS	TCAGCAATA	0.364	strelka	downstream_gene_variant	MODIFIER	CG4631	intron	CG42389	FBgn0259735
A573R33	2L	17493931	GA	'G'	AGCCGAAAA	INS	AGCCGAAAA	0.0667	strelka	upstream_gene_variant	MODIFIER	qua	intron	qua	FBgn0003187
A573R33	2L	17589322	GGA	'G'	GCAGGGAGA	INS	GCAGGGAGA	0.0952	strelka	5_prime_UTR_variant	MODIFIER	Oli	exon_1	Oli	FBgn0032651
A573R33	2L	17624979	GTGTA	'G'	TAGTGTGTA	INS	TAGTGTGTA	0.0986	strelka	upstream_gene_variant	MODIFIER	CG43054	intergenic	intergenic	intergenic
A573R33	2L	19127185	AT	'A'	GCTCATTTT	INS	GCTCATTTT	0.0685	strelka	upstream_gene_variant	MODIFIER	l(2)37Cc	intergenic	intergenic	intergenic
A573R33	2L	19279353	A	'AT'	CAAAATTGC	INS	GCAATTTTG	0.0656	strelka	intergenic_region	MODIFIER	CR44190-CG17564	intergenic	intergenic	intergenic
A573R33	2R	2754092	AAT	'A'	AAATAATAT	INS	AAATAATAT	0.167	strelka	intergenic_region	MODIFIER	MFS17-CG41378	intergenic	intergenic	intergenic
A573R33	2R	5911947	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.0909	strelka	intron_variant	MODIFIER	CG43366	intron	CG43366	FBgn0263109
A573R33	2R	6036102	GT	'G'	CCGTGTTTT	INS	CCGTGTTTT	0.0862	strelka	5_prime_UTR_variant	MODIFIER	SCAP	5UTR	SCAP	FBgn0033052
A573R33	2R	11082518	AAT	'A'	GAAAAATAA	INS	GAAAAATAA	0.06	mutect2	upstream_gene_variant	MODIFIER	CG43188	intron	luna	FBgn0040765
A573R33	2R	13361506	T	'TC'	TTATTCTTT	INS	TTATTCTTT	0.0851	strelka	downstream_gene_variant	MODIFIER	CR45312	intergenic	intergenic	intergenic
A573R33	2R	19190361	CT	'C'	CGCCCTTTT	INS	CGCCCTTTT	0.143	strelka	intron_variant	MODIFIER	hppy	intron	hppy	FBgn0263395
A573R33	2R	21195173	GT	'G'	TCGTGTTTT	INS	TCGTGTTTT	0.16	strelka	downstream_gene_variant	MODIFIER	tud	intron	Lapsyn	FBgn0034602
A573R33	2R	24674617	CAT	'C'	TATACATAT	INS	TATACATAT	0.2	strelka	downstream_gene_variant	MODIFIER	Pof	intron	Mmp1	FBgn0035049
A573R33	3L	84012	T	'TA'	TTGTTAATA	INS	TTGTTAATA	0.16	mutect2,strelka	intergenic_region	MODIFIER	CG13405-CG12483	intergenic	intergenic	intergenic
A573R33	3L	2313771	AC	'A'	GGTCACGTG	INS	GGTCACGTG	0.0571	strelka	downstream_gene_variant	MODIFIER	CR45427	intergenic	intergenic	intergenic
A573R33	3L	2617768	CCTT	'C'	TCCTCCTTC	INS	TCCTCCTTC	0.0517	mutect2	downstream_gene_variant	MODIFIER	CR45981	intron	Pxn	FBgn0011828
A573R33	3L	4377755	T	'TGGCC'	TTGTTAGTT	INS	TTGTTAGTT	0.179	strelka	downstream_gene_variant	MODIFIER	CG32240	ncRNA	CR44360	FBgn0265467
A573R33	3L	5213705	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.227	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
A573R33	3L	5958296	AGT	'A'	TACTAGTTT	INS	TACTAGTTT	0.289	strelka	intergenic_region	MODIFIER	CG33993-CG10479	intergenic	intergenic	intergenic
A573R33	3L	6701018	AC	'A'	CAAAACAAA	INS	CAAAACAAA	0.0678	strelka	upstream_gene_variant	MODIFIER	CG8519	intron	SP1173	FBgn0035710
A573R33	3L	6823902	AT	'A'	AGAAATAAA	INS	AGAAATAAA	0.0882	mutect2	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
A573R33	3L	7221800	AAAAAT	'A'	AGCTAAAAA	INS	AGCTAAAAA	0.192	mutect2	upstream_gene_variant	MODIFIER	CR45410	intergenic	intergenic	intergenic
A573R33	3L	7267470	CT	'C'	ATATCTTTT	INS	ATATCTTTT	0.0789	strelka	3_prime_UTR_variant	MODIFIER	unc-13-4A	3UTR	unc-13-4A	FBgn0035756
A573R33	3L	9094294	TTA	'T'	CTTTTTATT	INS	CTTTTTATT	0.143	mutect2,strelka	upstream_gene_variant	MODIFIER	CG13315	intron	CG32032	FBgn0043806
A573R33	3L	9234963	TA	'T'	TGTGTAAAA	INS	TGTGTAAAA	0.0833	strelka	downstream_gene_variant	MODIFIER	CG4483	intergenic	intergenic	intergenic
A573R33	3L	9490247	G	'GA'	AAAAGAGAA	INS	TTCTCTTTT	0.0833	strelka	upstream_gene_variant	MODIFIER	pall	intron	CG32037	FBgn0052037
A573R33	3L	10252069	ACAAAACCCAAT	'A'	ACGAACAAA	INS	ACGAACAAA	0.227	strelka	upstream_gene_variant	MODIFIER	CR44540	intergenic	intergenic	intergenic
A573R33	3L	10584501	A	'AAAAAAAAC'	AAAAAAAAA	INS	TTTTTTTTT	0.3	strelka	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
A573R33	3L	10619039	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.147	strelka	downstream_gene_variant	MODIFIER	CG42521	intergenic	intergenic	intergenic
A573R33	3L	11516308	GTAA	'G'	AGCAGTAAT	INS	AGCAGTAAT	0.087	strelka	downstream_gene_variant	MODIFIER	Sgs3	intron	CG7512	FBgn0036168
A573R33	3L	12453634	A	'ATAT'	TCAGATATA	INS	TATATCTGA	0.171	strelka	intergenic_region	MODIFIER	toe-eyg	intergenic	intergenic	intergenic
A573R33	3L	13050153	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.0755	strelka	downstream_gene_variant	MODIFIER	Syx13	intergenic	intergenic	intergenic
A573R33	3L	13674022	AT	'A'	AAAAATGAA	INS	AAAAATGAA	0.109	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
A573R33	3L	16038376	C	'CA'	GCGCCAAAA	INS	GCGCCAAAA	0.0972	strelka	upstream_gene_variant	MODIFIER	CR45889	intergenic	intergenic	intergenic
A573R33	3L	16714061	AAC	'A'	TGTCAACAC	INS	TGTCAACAC	0.0806	strelka	5_prime_UTR_variant	MODIFIER	Dab	5UTR	Dab	FBgn0000414
A573R33	3L	17832378	TA	'T'	AATATAAAA	INS	AATATAAAA	0.0926	strelka	downstream_gene_variant	MODIFIER	CG32188	intron	Grd	FBgn0001134
A573R33	3L	18161906	CGCA	'C'	ATATCGCAT	INS	ATATCGCAT	0.136	strelka	intron_variant	MODIFIER	CG13699	intron	CG13699	FBgn0036781
A573R33	3L	18363838	TGAAAATGAAACGG	'T'	CTTTTGAAA	INS	CTTTTGAAA	0.25	strelka	intergenic_region	MODIFIER	grim-rpr	intergenic	intergenic	intergenic
A573R33	3L	18654101	AT	'A'	GGTAATAAT	INS	GGTAATAAT	0.143	strelka	intron_variant	MODIFIER	MYPT-75D	intron	MYPT-75D	FBgn0036801
A573R33	3L	18863060	TA	'T'	GTCATAATA	INS	GTCATAATA	0.111	strelka	upstream_gene_variant	MODIFIER	CG6865	exon_2	CR45912	FBgn0267572
A573R33	3L	19818371	GCAA	'G'	GGCAGCAAC	INS	GGCAGCAAC	0.101	strelka	5_prime_UTR_variant	MODIFIER	Deaf1	5UTR	Deaf1	FBgn0013799
A573R33	3L	20190524	TA	'T'	TAAATAAAA	INS	TAAATAAAA	0.143	strelka	downstream_gene_variant	MODIFIER	Ssk	intron	CG42674	FBgn0261556
A573R33	3L	21194628	TA	'T'	AGCTTAAAA	INS	AGCTTAAAA	0.0822	strelka	upstream_gene_variant	MODIFIER	CG42337	exon_1	CR45951	FBgn0267613
A573R33	3L	24184655	GA	'G'	ACATGAAAA	INS	ACATGAAAA	0.108	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
A573R33	3L	26367007	C	'CA'	GTCGCAAAA	INS	GTCGCAAAA	0.0877	strelka	intron_variant	MODIFIER	CG42598	intron	CG42598	FBgn0260997
A573R33	3R	3998166	GA	'G'	GTGCGAAAA	INS	GTGCGAAAA	0.174	strelka	intergenic_region	MODIFIER	CG41099-CG42402	intergenic	intergenic	intergenic
A573R33	3R	4461082	CAT	'C'	TATGCATAT	INS	TATGCATAT	0.13	strelka	downstream_gene_variant	MODIFIER	CG31523	intron	CG31522	FBgn0051522
A573R33	3R	6829461	GA	'G'	AAATGAAAA	INS	AAATGAAAA	0.0806	strelka	upstream_gene_variant	MODIFIER	CR45901	intron	Scr	FBgn0003339
A573R33	3R	9866901	AT	'A'	AAAAATATA	INS	AAAAATATA	0.333	strelka	intron_variant	MODIFIER	Teh1	intron	Teh1	FBgn0037766
A573R33	3R	12044066	AGCT	'A'	GAGCAGCTG	INS	GAGCAGCTG	0.16	strelka	downstream_gene_variant	MODIFIER	CG14736	intergenic	intergenic	intergenic
A573R33	3R	18484300	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.109	strelka	upstream_gene_variant	MODIFIER	fru	intron	fru	FBgn0004652
A573R33	3R	20424529	A	'AGGCAGG'	CATGAGGCA	INS	TGCCTCATG	0.093	strelka	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
A573R33	3R	22866339	C	'CG'	TGCTCAGAA	INS	TGCTCAGAA	0.0769	strelka	intergenic_region	MODIFIER	CR43846-klg	intergenic	intergenic	intergenic
A573R33	3R	24622566	AAGGTGTCAATGTAGCTTT	'A'	TTTAAAGGT	INS	TTTAAAGGT	0.348	strelka	upstream_gene_variant	MODIFIER	atl	intron	mld	FBgn0263490
A573R33	3R	29955373	GA	'G'	ACCCGAAAA	INS	ACCCGAAAA	0.128	strelka	intron_variant	MODIFIER	TkR99D	intron	TkR99D	FBgn0004622
A573R33	3R	30308777	GTAAATGAAAAGAAATTTCA	'G'	CAAAGTAAA	INS	CAAAGTAAA	0.244	mutect2,strelka	upstream_gene_variant	MODIFIER	CG34300	intron	hdc	FBgn0010113
A573R33	3R	30822095	C	'CT'	TTGTCTTTT	INS	TTGTCTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	cindr	intron	cindr	FBgn0027598
A573R33	3R	31443675	T	'TA'	TTGTTAAAA	INS	TTGTTAAAA	0.261	strelka	intron_variant	MODIFIER	Gprk2	intron	Gprk2	FBgn0261988
A573R33	4	547448	C	'CT'	CTCTCTTTT	INS	CTCTCTTTT	0.0745	strelka	frameshift_variant	HIGH	Thd1	exon	Thd1	FBgn0026869
A573R33	4	563104	AT	'A'	ATTTATTTT	INS	ATTTATTTT	0.0658	strelka	intron_variant	MODIFIER	Pur-alpha	intron	Pur-alpha	FBgn0022361
A573R33	X	273086	G	'GT'	AAGTGTTTT	INS	AAAACACTT	0.125	strelka	intron_variant	MODIFIER	ewg	intron	ewg	FBgn0005427
A573R33	X	345384	G	'GA'	TCAGGAAAA	INS	TTTTCCTGA	0.118	strelka	intron_variant	MODIFIER	CG3777	intron	CG32816	FBgn0052816
A573R33	X	884337	GA	'G'	ACTGGAAAA	INS	ACTGGAAAA	0.2	strelka	5_prime_UTR_variant	MODIFIER	CG43867	exon_1	CG43867	FBgn0264449
A573R33	X	1216390	GCA	'G'	TCGAGCACA	INS	TCGAGCACA	0.116	strelka	3_prime_UTR_variant	MODIFIER	CG3638	3UTR	CG3638	FBgn0261444
A573R33	X	1798217	T	'TC'	TTTTTCATG	INS	TTTTTCATG	0.0227	mutect2	intron_variant	MODIFIER	CG42666	intron	CG42666	FBgn0261548
A573R33	X	2989562	TAC	'T'	CAGATACAC	INS	CAGATACAC	0.179	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
A573R33	X	3342779	C	'CA'	AAAACAAAA	INS	AAAACAAAA	0.2	strelka	3_prime_UTR_variant	MODIFIER	dnc	ncRNA	CR44886	FBgn0266180
A573R33	X	3586505	GT	'G'	GCCTGTTTT	INS	GCCTGTTTT	0.3	strelka	intron_variant	MODIFIER	AstA-R1	intron	AstA-R1	FBgn0266429
A573R33	X	3926587	C	'CA'	TCGGCAAAA	INS	TCGGCAAAA	0.174	strelka	intron_variant	MODIFIER	CG42541	intron	CG42541	FBgn0260658
A573R33	X	4070849	TAAGGGGTACCATCATTA	'T'	TTGATAAGG	INS	TTGATAAGG	0.0968	strelka	intergenic_region	MODIFIER	CR45482-CG43689	intergenic	intergenic	intergenic
A573R33	X	4081173	GT	'G'	TAAGGTTTT	INS	TAAGGTTTT	0.25	strelka	intron_variant	MODIFIER	CG43689	intron	CG43689	FBgn0263772
A573R33	X	5257943	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.292	strelka	downstream_gene_variant	MODIFIER	rg	intergenic	intergenic	intergenic
A573R33	X	5706281	GA	'G'	GGGGGAAAA	INS	GGGGGAAAA	0.226	strelka	downstream_gene_variant	MODIFIER	CG33080	intron	CG4096	FBgn0029791
A573R33	X	5862296	G	'GC'	CCGGGCCCC	INS	GGGGCCCGG	0.152	strelka	downstream_gene_variant	MODIFIER	CG43137	intergenic	intergenic	intergenic
A573R33	X	6134684	TA	'T'	CAAATAAAA	INS	CAAATAAAA	0.105	strelka	intron_variant	MODIFIER	Ca-alpha1T	intron	Ca-alpha1T	FBgn0264386
A573R33	X	6479435	G	'GT'	TGGTGTTTT	INS	AAAACACCA	0.222	strelka	upstream_gene_variant	MODIFIER	CG33666	intron	CG42340	FBgn0259242
A573R33	X	6624294	TCA	'T'	TGTCTCACA	INS	TGTCTCACA	0.19	strelka	intron_variant	MODIFIER	pigs	intron	pigs	FBgn0029881
A573R33	X	7910305	AT	'A'	GGTAATTTT	INS	GGTAATTTT	0.25	strelka	upstream_gene_variant	MODIFIER	dpr14	intron	CG1444	FBgn0029975
A573R33	X	8593820	G	'GT'	TTGTGTTTT	INS	AAAACACAA	0.353	strelka	upstream_gene_variant	MODIFIER	CG12659	intron	Crag	FBgn0025864
A573R33	X	8984618	CA	'C'	CCGCCAAAA	INS	CCGCCAAAA	0.16	strelka	upstream_gene_variant	MODIFIER	CG12662	ncRNA	CR43836	FBgn0264384
A573R33	X	9972370	TA	'T'	TAACTAAAA	INS	TAACTAAAA	0.316	strelka	upstream_gene_variant	MODIFIER	CG43386	intron	CG43386	FBgn0263216
A573R33	X	10364657	TA	'T'	CAAATAAAA	INS	CAAATAAAA	0.129	strelka	upstream_gene_variant	MODIFIER	CG17841	intron	l(1)G0289	FBgn0028331
A573R33	X	12231439	AT	'A'	TTTCATTTT	INS	TTTCATTTT	0.174	strelka	downstream_gene_variant	MODIFIER	CG32655	intron	Ten-a	FBgn0267001
A573R33	X	12544532	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.231	strelka	intron_variant	MODIFIER	CG43921	intron	CG43921	FBgn0264542
A573R33	X	12706219	GGCA	'G'	GACTGGCAG	INS	GACTGGCAG	0.176	strelka	disruptive_inframe_deletion	MODERATE	CG15725	exon_1	CG15725	FBgn0030417
A573R33	X	13389776	C	'CT'	GTTCCTTTT	INS	GTTCCTTTT	0.174	strelka	upstream_gene_variant	MODIFIER	Rbp1-like	intergenic	intergenic	intergenic
A573R33	X	13805166	CA	'C'	AGTACAAAA	INS	AGTACAAAA	0.238	strelka	intron_variant	MODIFIER	inaE	intron	inaE	FBgn0261244
A573R33	X	15628462	GA	'G'	ATTAGAAAA	INS	ATTAGAAAA	0.4	strelka	upstream_gene_variant	MODIFIER	sog	intron	sog	FBgn0003463
A573R33	X	15789382	GTA	'G'	ATGTGTATA	INS	ATGTGTATA	0.273	strelka	upstream_gene_variant	MODIFIER	Paf-AHalpha	intron	Rhp	FBgn0026374
A573R33	X	16990954	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.25	strelka	upstream_gene_variant	MODIFIER	CG45002	intron	CG45002	FBgn0266354
A573R33	X	17135314	CT	'C'	CTATCTTTT	INS	CTATCTTTT	0.235	strelka	3_prime_UTR_variant	MODIFIER	CG5004	3UTR	CG5004	FBgn0260748
A573R33	X	17296940	CA	'C'	CACGCAAAA	INS	CACGCAAAA	0.19	strelka	intron_variant	MODIFIER	CG5445	intron	Fim	FBgn0024238
A573R33	X	18517090	TTG	'T'	GCTGTTGTG	INS	GCTGTTGTG	0.176	strelka	upstream_gene_variant	MODIFIER	Ggt-1	intron	HisRS	FBgn0027087
A573R33	X	18926213	GCAA	'G'	AGCAGCAAC	INS	AGCAGCAAC	0.111	strelka	upstream_gene_variant	MODIFIER	CG43759	intergenic	intergenic	intergenic
A573R33	X	20045411	CAT	'C'	TGTACATAT	INS	TGTACATAT	0.25	strelka	intron_variant	MODIFIER	Dop2R	intron	Dop2R	FBgn0053517
A573R33	X	20361481	TA	'T'	GGAATAAAA	INS	GGAATAAAA	0.167	strelka	downstream_gene_variant	MODIFIER	CR46072	intergenic	intergenic	intergenic
A573R33	X	20561257	GAC	'G'	TGGAGACAC	INS	TGGAGACAC	0.119	strelka	intron_variant	MODIFIER	RunxB	intron	RunxB	FBgn0259162
A573R33	X	20568043	C	'CA'	AGAGCAAAA	INS	AGAGCAAAA	0.412	strelka	downstream_gene_variant	MODIFIER	RunxB	intergenic	intergenic	intergenic
A573R33	X	21260979	GCT	'G'	CATCGCTCT	INS	CATCGCTCT	0.115	strelka	intron_variant	MODIFIER	CG32521	intron	CG32521	FBgn0052521
B241R35	2L	984991	ATG	'A'	GTAAATGTG	INS	GTAAATGTG	0.25	strelka	downstream_gene_variant	MODIFIER	CR44801	intergenic	intergenic	intergenic
B241R35	2L	5822932	A	'AGTGCAAC'	TGAGATATA	INS	TATATCTCA	0.188	strelka	upstream_gene_variant	MODIFIER	CG31644	intergenic	intergenic	intergenic
B241R35	2L	5822935	TA	'T'	GATATACCA	INS	GATATACCA	0.2	strelka	upstream_gene_variant	MODIFIER	CG31644	intergenic	intergenic	intergenic
B241R35	2L	6232956	A	'ACAGTCCC'	GGGCACAGT	INS	ACTGTGCCC	0.08	mutect2	downstream_gene_variant	MODIFIER	CR44823	intergenic	intergenic	intergenic
B241R35	2L	6243882	T	'TTTAAAAACTTTGACG'	GATCTAGGT	INS	GATCTAGGT	0.429	strelka	intergenic_region	MODIFIER	CR44823-Ddr	intergenic	intergenic	intergenic
B241R35	2L	6243886	TATA	'T'	TAGGTATAG	INS	TAGGTATAG	0.429	strelka	intergenic_region	MODIFIER	CR44823-Ddr	intergenic	intergenic	intergenic
B241R35	2L	8588044	TGA	'T'	TAGGTGAGA	INS	TAGGTGAGA	0.15	strelka	downstream_gene_variant	MODIFIER	CR43855	intron	Sema-1a	FBgn0011259
B241R35	2L	11757234	AAGGG	'A'	GGTGAAGGG	INS	GGTGAAGGG	0.25	strelka	upstream_gene_variant	MODIFIER	CG42470	intergenic	intergenic	intergenic
B241R35	2L	13747489	GA	'G'	TTTGGAAAA	INS	TTTGGAAAA	0.231	strelka	downstream_gene_variant	MODIFIER	mir-1002	intron	TM9SF4	FBgn0028541
B241R35	2L	14382271	T	'TTTG'	TATTTTTTT	INS	TATTTTTTT	0.125	strelka	upstream_gene_variant	MODIFIER	ppk	intergenic	intergenic	intergenic
B241R35	2L	20314131	G	'GAATGTGTCAGGAGTAATGTTCTTA'	GTAGGAAGT	INS	ACTTCCTAC	0.375	strelka	downstream_gene_variant	MODIFIER	CR43606	intron	spir	FBgn0003475
B241R35	2R	4722578	TA	'T'	ATCATAACT	INS	ATCATAACT	0.5	mutect2,strelka	intron_variant	MODIFIER	Nipped-B	intron	Nipped-B	FBgn0026401
B241R35	2R	9382684	A	'AC'	ACATAACAC	INS	GTGTTATGT	0.125	strelka	intron_variant	MODIFIER	CG13954	intron	CG13954	FBgn0033405
B241R35	2R	11054829	CCA	'C'	ACACCCACA	INS	ACACCCACA	0.2	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R35	2R	12243063	GT	'G'	GCTTGTTTT	INS	GCTTGTTTT	0.4	strelka	downstream_gene_variant	MODIFIER	CG13170	intron	CG43316	FBgn0263021
B241R35	2R	13707965	T	'TACTTTCCGAGATAGG'	TATATACCT	INS	TATATACCT	0.286	strelka	intron_variant	MODIFIER	fas	intron	fas	FBgn0000633
B241R35	2R	14942020	GT	'G'	AAAAGTCAG	INS	AAAAGTCAG	0.12	strelka	upstream_gene_variant	MODIFIER	CG10257	intergenic	intergenic	intergenic
B241R35	2R	17033298	T	'TTTACCAAGCTTCGAAATCCCG'	CCATTTTAC	INS	CCATTTTAC	0.176	strelka	5_prime_UTR_variant	MODIFIER	CG43328	3UTR	CG43327	FBgn0263032
B241R35	2R	17260090	GCA	'G'	TAGTGCACA	INS	TAGTGCACA	0.129	strelka	upstream_gene_variant	MODIFIER	CR43660	intron	mbl	FBgn0265487
B241R35	2R	17501114	A	'ATAT'	TATCATTTT	INS	AAAATGATA	0.25	strelka	upstream_gene_variant	MODIFIER	CG43164	intergenic	intergenic	intergenic
B241R35	2R	18013880	GA	'G'	GGCGGAAAA	INS	GGCGGAAAA	0.214	strelka	upstream_gene_variant	MODIFIER	CG5084	intergenic	intergenic	intergenic
B241R35	2R	20058062	AATGTACAATACATT	'A'	TATAAATGT	INS	TATAAATGT	0.429	strelka	upstream_gene_variant	MODIFIER	CR44631	intergenic	intergenic	intergenic
B241R35	2R	24854071	G	'GATTGACACCCACCC'	AGTCGAATC	INS	GATTCGACT	0.429	strelka	downstream_gene_variant	MODIFIER	CG3650	intergenic	intergenic	intergenic
B241R35	3L	705296	TTAGCAACTTCATAACTTATAATG	'T'	TGACTTAGC	INS	TGACTTAGC	0.429	strelka	upstream_gene_variant	MODIFIER	CR44514	intergenic	intergenic	intergenic
B241R35	3L	1032183	TCTCTG	'T'	TTCTTCTCT	INS	TTCTTCTCT	0.235	strelka	upstream_gene_variant	MODIFIER	CG9205	intron	trio	FBgn0024277
B241R35	3L	3383658	AT	'A'	CCTGATCAC	INS	CCTGATCAC	0.115	strelka	downstream_gene_variant	MODIFIER	CG12014	intergenic	intergenic	intergenic
B241R35	3L	4377755	T	'TGGCC'	TTGTTAGTT	INS	TTGTTAGTT	0.176	strelka	downstream_gene_variant	MODIFIER	CG32240	ncRNA	CR44360	FBgn0265467
B241R35	3L	5192802	GT	'G'	GGGGGTGTG	INS	GGGGGTGTG	0.4	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
B241R35	3L	6153847	A	'AT'	TAGCATTTT	INS	AAAATGCTA	0.45	strelka	upstream_gene_variant	MODIFIER	Cpr65Ax2	intergenic	intergenic	intergenic
B241R35	3L	6603693	TC	'T'	TCTTTCCCT	INS	TCTTTCCCT	0.167	strelka	5_prime_UTR_variant	MODIFIER	CG8368	exon_1	CG8368	FBgn0035707
B241R35	3L	8267160	GCA	'G'	CCACGCACA	INS	CCACGCACA	0.2	strelka	intron_variant	MODIFIER	Dscam4	intron	Dscam4	FBgn0263219
B241R35	3L	9957489	CG	'C'	TAAGCGAAA	INS	TAAGCGAAA	0.129	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
B241R35	3L	10298606	T	'TTCACTGCAAAGAATGTGTTAGG'	ACTTTTTAC	INS	ACTTTTTAC	0.4	strelka	non_coding_transcript_exon_variant	MODIFIER	CR46003	exon_1	CR46003	FBgn0267665
B241R35	3L	10658346	A	'AT'	AGACATTTT	INS	AAAATGTCT	0.333	strelka	upstream_gene_variant	MODIFIER	CG8003	intron	CG32066	FBgn0052066
B241R35	3L	11030999	CA	'C'	ACCCCAAAA	INS	ACCCCAAAA	0.3	strelka	upstream_gene_variant	MODIFIER	CR44547	intergenic	intergenic	intergenic
B241R35	3L	11275401	AG	'A'	ATCAAGGGG	INS	ATCAAGGGG	0.333	strelka	upstream_gene_variant	MODIFIER	CR44720	intergenic	intergenic	intergenic
B241R35	3L	16641988	ATG	'A'	ATGTATGTA	INS	ATGTATGTA	0.188	strelka	intron_variant	MODIFIER	Abl	intron	Abl	FBgn0000017
B241R35	3L	20162734	C	'CTGG'	GCTGCTGGT	INS	GCTGCTGGT	0.0952	mutect2	disruptive_inframe_insertion	MODERATE	CG42674	exon_4	CG42674	FBgn0261556
B241R35	3L	20739800	A	'AGT'	TCCGAGTGT	INS	ACACTCGGA	0.188	mutect2,strelka	upstream_gene_variant	MODIFIER	Gr77a	intron	CG13252	FBgn0037016
B241R35	3L	21409689	GCA	'G'	TACGGCACT	INS	TACGGCACT	0.118	mutect2	upstream_gene_variant	MODIFIER	sa	intron	rgn	FBgn0261258
B241R35	3L	25611529	G	'GC'	TGAGGCCCA	INS	TGGGCCTCA	0.25	strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
B241R35	3L	26717517	GT	'G'	CTTGGTCGT	INS	CTTGGTCGT	0.214	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
B241R35	3L	27256847	G	'GA'	TTCCGAGAA	INS	TTCTCGGAA	0.158	strelka	intergenic_region	MODIFIER	CR43170-RpL15	intergenic	intergenic	intergenic
B241R35	3L	27903362	TA	'T'	AGAGTAAAA	INS	AGAGTAAAA	0.162	strelka	intergenic_region	MODIFIER	eIF-4B-CG17514	intergenic	intergenic	intergenic
B241R35	3R	2467676	G	'GT'	ACGGGTTTT	INS	AAAACCCGT	0.3	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
B241R35	3R	4316015	ACGCGACT	'A'	CCAGACGCG	INS	CCAGACGCG	0.111	mutect2	frameshift_variant	HIGH	Syt14	3UTR	Syt14	FBgn0261086
B241R35	3R	6049543	TCA	'T'	TCTCTCACA	INS	TCTCTCACA	0.158	strelka	downstream_gene_variant	MODIFIER	CR44921	intergenic	intergenic	intergenic
B241R35	3R	7261666	A	'ATTGGAGAAATATCT'	AAATACCAT	INS	ATGGTATTT	0.312	strelka	upstream_gene_variant	MODIFIER	CR44338	intron	Gld	FBgn0001112
B241R35	3R	7373152	ACGCATGGCAACATGTGCAATTTAACCT	'A'	AAAAACGCA	INS	AAAAACGCA	0.471	strelka	upstream_gene_variant	MODIFIER	MstProx	intergenic	intergenic	intergenic
B241R35	3R	8531398	AAC	'A'	CCGAAACAC	INS	CCGAAACAC	0.0938	strelka	upstream_gene_variant	MODIFIER	CG11741	intergenic	intergenic	intergenic
B241R35	3R	9560158	CCA	'C'	ATAACCACA	INS	ATAACCACA	0.231	strelka	upstream_gene_variant	MODIFIER	CG9386	intron	MBD-like	FBgn0027950
B241R35	3R	13491048	GCAGCAA	'G'	AGCAGCAGC	INS	AGCAGCAGC	0.222	mutect2	intergenic_region	MODIFIER	CR45589-CG12538	intergenic	intergenic	intergenic
B241R35	3R	20765911	T	'TCCCC'	GGCCTCCAC	INS	GGCCTCCAC	0.25	strelka	upstream_gene_variant	MODIFIER	CG31195	intron	Syp	FBgn0038826
B241R35	3R	23074461	AGT	'A'	TGTCAGTGT	INS	TGTCAGTGT	0.167	strelka	intron_variant	MODIFIER	CG13830	intron	Cow	FBgn0039054
B241R35	3R	27540707	AGT	'A'	CGTAAGTGT	INS	CGTAAGTGT	0.273	strelka	upstream_gene_variant	MODIFIER	CR44289	intergenic	intergenic	intergenic
B241R35	3R	28130571	GCTT	'G'	TGCTGCTTC	INS	TGCTGCTTC	0.154	mutect2	intergenic_region	MODIFIER	CG34362-CR46077	intergenic	intergenic	intergenic
B241R35	3R	28319264	GT	'G'	AATGGTTTT	INS	AATGGTTTT	0.2	strelka	3_prime_UTR_variant	MODIFIER	larp	3UTR	larp	FBgn0261618
B241R35	3R	30181416	ACTTGAAAAGCAAATCACATTGC	'A'	TTGCACTTG	INS	TTGCACTTG	0.312	strelka	3_prime_UTR_variant	MODIFIER	Bet5	3UTR	Bet5	FBgn0260860
B241R35	3R	30276464	CT	'C'	CATACTTTT	INS	CATACTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	CR46113	intergenic	intergenic	intergenic
B241R35	3R	30930683	GA	'G'	TATGGAAAA	INS	TATGGAAAA	0.222	strelka	downstream_gene_variant	MODIFIER	Ptx1	intergenic	intergenic	intergenic
B241R35	3R	31746240	AATTT	'A'	GAATAATTT	INS	GAATAATTT	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	awd	intergenic	intergenic	intergenic
B241R35	X	2543751	GCA	'G'	ACTCGCACA	INS	ACTCGCACA	0.231	strelka	downstream_gene_variant	MODIFIER	mir-4955	intron	trol	FBgn0267911
B241R35	X	4412689	TCA	'T'	TTACTCACA	INS	TTACTCACA	0.214	strelka	upstream_gene_variant	MODIFIER	bi	ncRNA	CR32773	FBgn0052773
B241R35	X	7152805	ATG	'A'	TCACATGTG	INS	TCACATGTG	0.267	strelka	upstream_gene_variant	MODIFIER	CR32730	intron	CG9650	FBgn0029939
B241R35	X	8640916	T	'TTGCG'	GTCATTGCG	INS	GTCATTGCG	0.4	strelka	intron_variant	MODIFIER	oc	intron	oc	FBgn0004102
B241R35	X	9580053	CA	'C'	ATACCAAAA	INS	ATACCAAAA	0.3	strelka	upstream_gene_variant	MODIFIER	CG32699	intergenic	intergenic	intergenic
B241R35	X	9619692	TTGCC	'T'	TCACTTGCC	INS	TCACTTGCC	0.133	mutect2	intron_variant	MODIFIER	CG42797	intron	CG42797	FBgn0261931
B241R35	X	12271987	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.3	strelka	upstream_gene_variant	MODIFIER	CG45603	intron	Ten-a	FBgn0267001
B241R35	X	12924149	TA	'T'	TGGCTAAAA	INS	TGGCTAAAA	0.5	strelka	intron_variant	MODIFIER	fne	intron	fne	FBgn0086675
B241R35	X	14322946	ATG	'A'	GCTGATGTG	INS	GCTGATGTG	0.231	strelka	intron_variant	MODIFIER	dpr8	intron	dpr8	FBgn0052600
B241R35	X	16513936	GAT	'G'	CGTTGATAT	INS	CGTTGATAT	0.125	strelka	intron_variant	MODIFIER	para	intron	para	FBgn0264255
B241R35	X	18607794	GT	'G'	GGATGTTGT	INS	GGATGTTGT	0.176	mutect2,strelka	frameshift_variant	HIGH	CG15040	exon	CG15040	FBgn0030940
B241R35	X	19753583	CCA	'C'	ATACCCACA	INS	ATACCCACA	0.273	strelka	upstream_gene_variant	MODIFIER	Pmp70	intron	Pmp70	FBgn0031069
B241R35	X	21069458	CA	'C'	CGGCCAGTG	INS	CGGCCAGTG	0.154	mutect2	upstream_gene_variant	MODIFIER	CG32512	intron	bves	FBgn0031150
B241R35	X	21368867	GT	'G'	TTTTGTTTT	INS	TTTTGTTTT	0.333	strelka	5_prime_UTR_variant	MODIFIER	bbx	intron	waw	FBgn0024182
B241R35	Y	3019686	CACCT	'C'	CTCACACCT	INS	CTCACACCT	0.15	strelka	upstream_gene_variant	MODIFIER	fdy	intergenic	intergenic	intergenic
B241R37	2L	3904349	GT	'G'	TCAAGTTTT	INS	TCAAGTTTT	0.0938	strelka	3_prime_UTR_variant	MODIFIER	fred	3UTR	fred	FBgn0051774
B241R37	2L	4417370	GCA	'G'	TTGAGCACA	INS	TTGAGCACA	0.133	strelka	downstream_gene_variant	MODIFIER	tRNA:CR31963	intron	CG15431	FBgn0031602
B241R37	2L	4739357	CA	'C'	TTGGCAAAA	INS	TTGGCAAAA	0.0645	strelka	upstream_gene_variant	MODIFIER	CG15631	intron	CG15630	FBgn0031627
B241R37	2L	4906595	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.0877	strelka	downstream_gene_variant	MODIFIER	CG3036	intron	CG2837	FBgn0031646
B241R37	2L	6330351	CG	'C'	CCACCGAAC	INS	CCACCGAAC	0.0638	mutect2	frameshift_variant	HIGH	PDZ-GEF	exon_6	PDZ-GEF	FBgn0265778
B241R37	2L	9464891	TATGGAGTTTAGTGAAATACGAAAC	'T'	GTTTTATGG	INS	GTTTTATGG	0.167	strelka	downstream_gene_variant	MODIFIER	numb	intergenic	intergenic	intergenic
B241R37	2L	14335096	AAC	'A'	GGCCAACAC	INS	GGCCAACAC	0.0635	strelka	upstream_gene_variant	MODIFIER	CG15286	intron	CG33090	FBgn0028916
B241R37	2L	14713014	GAGC	'G'	AATCGAGCA	INS	AATCGAGCA	0.08	strelka	disruptive_inframe_deletion	MODERATE	CG15282	exon	CG15282	FBgn0028855
B241R37	2L	17204062	GA	'G'	ATATGAAAA	INS	ATATGAAAA	0.125	strelka	intron_variant	MODIFIER	beat-IIIc	intron	beat-IIIc	FBgn0032629
B241R37	2L	17352198	A	'AATAT'	GCCCATTAC	INS	GTAATGGGC	0.214	strelka	upstream_gene_variant	MODIFIER	CR44345	intergenic	intergenic	intergenic
B241R37	2L	19868628	CAAAAG	'C'	AAGGCAAAA	INS	AAGGCAAAA	0.098	mutect2	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
B241R37	2L	20004573	ACTGG	'A'	ACTGACTGG	INS	ACTGACTGG	0.0405	mutect2	upstream_gene_variant	MODIFIER	CR44908	intron	CG43861	FBgn0264443
B241R37	2L	22018122	GTGGGAACCTGTCACGATCACACTTTTAAAAAATAGCT	'G'	AACCGTGGG	INS	AACCGTGGG	0.333	strelka	upstream_gene_variant	MODIFIER	CR33987	intergenic	intergenic	intergenic
B241R37	2R	2869493	G	'GT'	ACGCGTTTT	INS	AAAACGCGT	0.386	strelka	intergenic_region	MODIFIER	CG41378-Scp1	intergenic	intergenic	intergenic
B241R37	2R	3902006	AT	'A'	CACAATTTT	INS	CACAATTTT	0.114	strelka	intron_variant	MODIFIER	uex	intron	uex	FBgn0262124
B241R37	2R	5677111	A	'ACAATGC'	TTCAAACTC	INS	GAGTTTGAA	0.424	strelka	3_prime_UTR_variant	MODIFIER	scaf	3UTR	scaf	FBgn0033033
B241R37	2R	7026592	TTATCAAAGC	'T'	TCTCTTATC	INS	TCTCTTATC	0.2	strelka	upstream_gene_variant	MODIFIER	CR44172	intron	Tsp42Ef	FBgn0033127
B241R37	2R	9015249	A	'ACATGTTAAGAGCTTATATAAT'	TTATATTTT	INS	AAAATATAA	0.136	strelka	upstream_gene_variant	MODIFIER	CG8172	intron	CG13744	FBgn0033363
B241R37	2R	10296970	TCAA	'T'	GGGTTCAAC	INS	GGGTTCAAC	0.0492	mutect2	disruptive_inframe_deletion	MODERATE	CAP	exon_6	CAP	FBgn0033504
B241R37	2R	10913699	G	'GGGTTAGCATCATGTGACA'	TGCTGGAAG	INS	CTTCCAGCA	0.188	strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
B241R37	2R	11712473	TCGCACAC	'T'	AAAATCGCA	INS	AAAATCGCA	0.114	strelka	5_prime_UTR_variant	MODIFIER	pyr	5UTR	pyr	FBgn0033649
B241R37	2R	11712482	C	'CAGTTGTTTTA'	CACCCAAAA	INS	CACCCAAAA	0.111	strelka	5_prime_UTR_variant	MODIFIER	pyr	5UTR	pyr	FBgn0033649
B241R37	2R	11734107	T	'TTATAAA'	TTGTTACTC	INS	TTGTTACTC	0.133	strelka	intergenic_region	MODIFIER	pyr-ths	intergenic	intergenic	intergenic
B241R37	2R	12158846	C	'CT'	ATTCCTTTT	INS	ATTCCTTTT	0.0606	strelka	upstream_gene_variant	MODIFIER	CG13177	intron	Prp8	FBgn0033688
B241R37	2R	13617943	C	'CTATGCATATAAGTATG'	TGAACTATG	INS	TGAACTATG	0.107	strelka	intergenic_region	MODIFIER	CG12464-fas	intergenic	intergenic	intergenic
B241R37	2R	13937399	GA	'G'	ACGGGATTT	INS	ACGGGATTT	0.114	strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
B241R37	2R	14962204	GCA	'G'	TGAGGCACA	INS	TGAGGCACA	0.0833	strelka	upstream_gene_variant	MODIFIER	aPKC	intron	aPKC	FBgn0261854
B241R37	2R	16911909	AGTACGTGCGTGGTAC	'A'	AGAAAGTAC	INS	AGAAAGTAC	0.227	strelka	intergenic_region	MODIFIER	inaC-Pkc53E	intergenic	intergenic	intergenic
B241R37	2R	19103519	G	'GACATATAT'	ACTAGACCT	INS	AGGTCTAGT	0.2	strelka	intron_variant	MODIFIER	5-HT1A	intron	5-HT1A	FBgn0004168
B241R37	2R	20844108	C	'CG'	TGGGCGTTT	INS	TGGGCGTTT	0.111	strelka	downstream_gene_variant	MODIFIER	CG17999	intergenic	intergenic	intergenic
B241R37	2R	21206456	CA	'C'	ATGCCAAAA	INS	ATGCCAAAA	0.0816	strelka	upstream_gene_variant	MODIFIER	CG44245	intron	Glycogenin	FBgn0265191
B241R37	2R	23178063	GTGT	'G'	TTCAGTGTT	INS	TTCAGTGTT	0.0962	strelka	intron_variant	MODIFIER	CG34371	intron	CG34371	FBgn0085400
B241R37	3L	2578488	ACAACAACAACTGCAGCACTGCGAACG	'A'	AACAACAAC	INS	AACAACAAC	0.212	strelka	intron_variant	MODIFIER	msn	intron	msn	FBgn0010909
B241R37	3L	3706142	TTCTG	'T'	GGTTTTCTG	INS	GGTTTTCTG	0.318	strelka	upstream_gene_variant	MODIFIER	CR45675	intergenic	intergenic	intergenic
B241R37	3L	5636598	TTTG	'T'	GGTTTTTGT	INS	GGTTTTTGT	0.139	mutect2	intron_variant	MODIFIER	Blimp-1	intron	Blimp-1	FBgn0035625
B241R37	3L	6603693	TC	'T'	TCTTTCCCT	INS	TCTTTCCCT	0.0588	mutect2	5_prime_UTR_variant	MODIFIER	CG8368	exon_1	CG8368	FBgn0035707
B241R37	3L	7361548	TA	'T'	CCGGTAAAA	INS	CCGGTAAAA	0.118	strelka	upstream_gene_variant	MODIFIER	CTCF	intron	Sec63	FBgn0035771
B241R37	3L	7584568	AG	'A'	GAGGAGGAG	INS	GAGGAGGAG	0.0755	strelka	frameshift_variant	HIGH	CG14838	exon_3	CG14838	FBgn0035799
B241R37	3L	7891800	G	'GA'	ACCAGAAAA	INS	TTTTCTGGT	0.0816	strelka	upstream_gene_variant	MODIFIER	eIF4E-5	intron	CG32365	FBgn0052365
B241R37	3L	8036545	AGAC	'A'	AGTCAGACG	INS	AGTCAGACG	0.0833	strelka	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
B241R37	3L	8326651	A	'AAGTTGG'	TAAGAAGTT	INS	AACTTCTTA	0.286	strelka	upstream_gene_variant	MODIFIER	CG34462	intron	CG34461	FBgn0250833
B241R37	3L	9904124	TGGCCGCGAATACCATTTGCCCAGGAGCACAAA	'T'	TAACTGGCC	INS	TAACTGGCC	0.27	strelka	upstream_gene_variant	MODIFIER	CG34356	intergenic	intergenic	intergenic
B241R37	3L	10000920	G	'GT'	GAGAGTTTT	INS	AAAACTCTC	0.0735	strelka	downstream_gene_variant	MODIFIER	CR45877	intron	dpr6	FBgn0040823
B241R37	3L	11137293	A	'AACACATTTGCG'	TGGCAAATC	INS	GATTTGCCA	0.103	strelka	upstream_gene_variant	MODIFIER	CG32074	intron	CG32082	FBgn0052082
B241R37	3L	15468178	CT	'C'	TCTGCTTTT	INS	TCTGCTTTT	0.0926	strelka	downstream_gene_variant	MODIFIER	CG7804	intergenic	intergenic	intergenic
B241R37	3L	18657788	AAT	'A'	GTCTAATCG	INS	GTCTAATCG	0.0541	mutect2	intron_variant	MODIFIER	MYPT-75D	intron	MYPT-75D	FBgn0036801
B241R37	3L	24515299	TTCTC	'T'	TCGTTTCTC	INS	TCGTTTCTC	0.093	strelka	intergenic_region	MODIFIER	nvd-CR12460	intergenic	intergenic	intergenic
B241R37	3R	4720417	GA	'G'	GCGGGAAAA	INS	GCGGGAAAA	0.0714	strelka	splice_region_variant&intron_variant	LOW	Nep2	intron	Nep2	FBgn0027570
B241R37	3R	5347418	A	'AC'	AAAAAATTT	INS	AAATTTTTT	0.152	strelka	intron_variant	MODIFIER	mtd	intron	mtd	FBgn0013576
B241R37	3R	7019325	GA	'G'	AGCCGAAAA	INS	AGCCGAAAA	0.0806	strelka	intergenic_region	MODIFIER	CR45899-CR44933	intergenic	intergenic	intergenic
B241R37	3R	12613975	TA	'T'	AGGATAAAA	INS	AGGATAAAA	0.151	strelka	downstream_gene_variant	MODIFIER	CR46017	intergenic	intergenic	intergenic
B241R37	3R	13218506	GA	'G'	GGCGGAAAA	INS	GGCGGAAAA	0.0833	mutect2,strelka	upstream_gene_variant	MODIFIER	CG8483	intergenic	intergenic	intergenic
B241R37	3R	14446388	ACCAC	'A'	AACCACCAC	INS	AACCACCAC	0.1	strelka	intron_variant	MODIFIER	cv-c	intron	cv-c	FBgn0086901
B241R37	3R	14760361	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.125	strelka	intron_variant	MODIFIER	jvl	intron	jvl	FBgn0263929
B241R37	3R	15435218	A	'AC'	CCCCACCCC	INS	GGGGTGGGG	0.211	strelka	upstream_gene_variant	MODIFIER	CG6118	intergenic	intergenic	intergenic
B241R37	3R	17617261	C	'CGACCTAGCAAAGACACTAGGGTCTTTG'	ACAGCGACC	INS	ACAGCGACC	0.107	strelka	upstream_gene_variant	MODIFIER	tRNA:V3b:90BC	intergenic	intergenic	intergenic
B241R37	3R	18076211	G	'GA'	TAAGGAAAA	INS	TTTTCCTTA	0.114	strelka	upstream_gene_variant	MODIFIER	CG14317	intergenic	intergenic	intergenic
B241R37	3R	18597136	GGCT	'G'	TTGCGGCTG	INS	TTGCGGCTG	0.0667	strelka	disruptive_inframe_deletion	MODERATE	CG14304	exon_4	CG14304	FBgn0038629
B241R37	3R	19256945	CGAT	'C'	TCGGCGATG	INS	TCGGCGATG	0.0667	strelka	5_prime_UTR_variant	MODIFIER	CG14280	5UTR	CG14280	FBgn0038695
B241R37	3R	20989123	GT	'G'	CCCTGTTTT	INS	CCCTGTTTT	0.162	strelka	upstream_gene_variant	MODIFIER	CG43446	intron	Calx	FBgn0013995
B241R37	3R	21572694	G	'GT'	TTCTGTTTT	INS	AAAACAGAA	0.204	strelka	3_prime_UTR_variant	MODIFIER	InR	3UTR	InR	FBgn0283499
B241R37	3R	23364774	T	'TTTTTG'	TTTTTTTAT	INS	TTTTTTTAT	0.0426	mutect2	upstream_gene_variant	MODIFIER	CG4408	intergenic	intergenic	intergenic
B241R37	3R	24177656	G	'GA'	AATAGAAAA	INS	TTTTCTATT	0.102	strelka	intron_variant	MODIFIER	CG13606	intron	CG13606	FBgn0039161
B241R37	3R	26669722	GAGTTTTGTAGTTATTAGAAAGTC	'G'	GTTTGAGTT	INS	GTTTGAGTT	0.25	strelka	intron_variant	MODIFIER	beat-VII	intron	beat-VII	FBgn0250908
B241R37	3R	30181387	GCACTAGGAGTC	'G'	AATTGCACT	INS	AATTGCACT	0.182	strelka	3_prime_UTR_variant	MODIFIER	Bet5	3UTR	Bet5	FBgn0260860
B241R37	3R	30181416	ACTTGAAAAGCAAATCACATTGC	'A'	TTGCACTTG	INS	TTGCACTTG	0.219	strelka	3_prime_UTR_variant	MODIFIER	Bet5	3UTR	Bet5	FBgn0260860
B241R37	3R	30264321	A	'AC'	CGAGAAAAC	INS	GTTTTCTCG	0.0889	strelka	intergenic_region	MODIFIER	CG18404-CR46113	intergenic	intergenic	intergenic
B241R37	3R	30822095	C	'CT'	TTGTCTTTT	INS	TTGTCTTTT	0.103	strelka	upstream_gene_variant	MODIFIER	cindr	intron	cindr	FBgn0027598
B241R37	3R	31996859	T	'TAAAATAAAAAAAAAAAA'	CGTTTTAAA	INS	CGTTTTAAA	0.258	strelka	upstream_gene_variant	MODIFIER	heph	intron	heph	FBgn0011224
B241R37	X	2520433	AAC	'A'	AAAAAACAC	INS	AAAAAACAC	0.167	strelka	upstream_gene_variant	MODIFIER	trol	intron	trol	FBgn0267911
B241R37	X	2808978	CGAT	'C'	ATGACGATG	INS	ATGACGATG	0.133	strelka	upstream_gene_variant	MODIFIER	CG12498	intron	kirre	FBgn0028369
B241R37	X	3746988	CTGT	'C'	GCCTCTGTT	INS	GCCTCTGTT	0.125	strelka	upstream_gene_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
B241R37	X	3922222	GT	'G'	CAACGTTTT	INS	CAACGTTTT	0.148	strelka	intron_variant	MODIFIER	CG42541	intron	CG42541	FBgn0260658
B241R37	X	5286189	CT	'C'	TACTCTTTT	INS	TACTCTTTT	0.138	strelka	intergenic_region	MODIFIER	CG15465-CG42749	intergenic	intergenic	intergenic
B241R37	X	5679441	GCA	'G'	AAATGCACA	INS	AAATGCACA	0.167	strelka	upstream_gene_variant	MODIFIER	Gr5a	intron	Tre1	FBgn0046687
B241R37	X	7184996	ATG	'A'	GGTCATGTG	INS	GGTCATGTG	0.103	strelka	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
B241R37	X	8105909	GA	'G'	ATGTGAAAA	INS	ATGTGAAAA	0.714	strelka	upstream_gene_variant	MODIFIER	CG2258	intron	Gclc	FBgn0040319
B241R37	X	8343019	TCA	'T'	ACACTCACA	INS	ACACTCACA	0.0882	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
B241R37	X	10644607	TTG	'T'	GTGATTGTG	INS	GTGATTGTG	0.192	strelka	intron_variant	MODIFIER	X11Lbeta	intron	X11Lbeta	FBgn0052677
B241R37	X	11979548	GT	'G'	TGTAGTTTT	INS	TGTAGTTTT	0.133	strelka	intron_variant	MODIFIER	cac	intron	cac	FBgn0263111
B241R37	X	12002269	TTTG	'T'	GTTTTTTGT	INS	GTTTTTTGT	0.103	strelka	5_prime_UTR_variant	MODIFIER	fw	5UTR	fw	FBgn0001083
B241R37	X	12894719	GT	'G'	TCCTGTTTT	INS	TCCTGTTTT	0.179	strelka	downstream_gene_variant	MODIFIER	CG32650	intron	Pde9	FBgn0259171
B241R37	X	13342028	C	'CTTA'	GGAACTTTT	INS	GGAACTTTT	0.125	strelka	upstream_gene_variant	MODIFIER	RpS15Aa	intergenic	intergenic	intergenic
B241R37	X	13891295	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.16	strelka	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
B241R37	X	14627215	CGT	'C'	TGGGCGTGT	INS	TGGGCGTGT	0.152	strelka	intron_variant	MODIFIER	NetA	intron	NetA	FBgn0015773
B241R37	X	17345742	A	'AT'	TAAAATGCT	INS	AGCATTTTA	0.188	strelka	intergenic_region	MODIFIER	B-H2-CR43491	intergenic	intergenic	intergenic
B241R37	X	18495721	GAC	'G'	CAAGGACAC	INS	CAAGGACAC	0.111	strelka	3_prime_UTR_variant	MODIFIER	GalNAc-T2	3UTR	GalNAc-T2	FBgn0030930
B241R37	X	19513765	ACAG	'A'	AACAACAGC	INS	AACAACAGC	0.108	strelka	conservative_inframe_deletion	MODERATE	CG14200	exon_4	CG14200	FBgn0031023
B241R37	X	20084115	TTG	'T'	ATGTTTGTG	INS	ATGTTTGTG	0.19	strelka	intergenic_region	MODIFIER	Dop2R-CR45628	intergenic	intergenic	intergenic
B241R37	Y	2620381	A	'AAT'	TAAAAATAT	INS	ATATTTTTA	0.267	strelka	intergenic_region	MODIFIER	Su(Ste):CR42424-fdy	intergenic	intergenic	intergenic
B241R39	2L	521192	C	'CA'	ACCCCAAAA	INS	ACCCCAAAA	0.0725	strelka	upstream_gene_variant	MODIFIER	ush	intron	ush	FBgn0003963
B241R39	2L	647530	AC	'A'	AAAAACCTC	INS	AAAAACCTC	0	consensus	intron_variant	MODIFIER	ds	intron	ds	FBgn0000497
B241R39	2L	867348	GAC	'G'	CTCAGACAC	INS	CTCAGACAC	0.104	strelka	upstream_gene_variant	MODIFIER	aru	intron	aru	FBgn0029095
B241R39	2L	1077053	GCA	'G'	TGCCGCACA	INS	TGCCGCACA	0.0667	strelka	5_prime_UTR_variant	MODIFIER	S	exon_1	S	FBgn0003310
B241R39	2L	2132335	ATCTATTAATTTTCCATTGACTCGAGCAATTTTGGCGACTAGAAGT	'A'	ATGTATCTA	INS	ATGTATCTA	0.128	strelka	upstream_gene_variant	MODIFIER	CG4259	intron	GlyP	FBgn0004507
B241R39	2L	2698113	GCTGCTGCTGCTGCTGCTA	'G'	TGCTGCTGC	INS	TGCTGCTGC	0.0294	mutect2	upstream_gene_variant	MODIFIER	CG15398	intron	CG31690	FBgn0051690
B241R39	2L	5341080	TATATCA	'T'	TCTTTATAT	INS	TCTTTATAT	0.286	strelka	upstream_gene_variant	MODIFIER	fusl	intron	CG12512	FBgn0031703
B241R39	2L	5341092	CTTATA	'C'	AATTCTTAT	INS	AATTCTTAT	0.333	strelka	upstream_gene_variant	MODIFIER	fusl	intron	CG12512	FBgn0031703
B241R39	2L	7559831	T	'TC'	GCTCTCTAT	INS	GCTCTCTAT	0.163	strelka	intron_variant	MODIFIER	RapGAP1	intron	RapGAP1	FBgn0264895
B241R39	2L	8589467	T	'TTTGTTTCTACTTTA'	AGTTTAAGA	INS	AGTTTAAGA	0.147	strelka	downstream_gene_variant	MODIFIER	CR43855	intron	Sema-1a	FBgn0011259
B241R39	2L	8589469	A	'ATTTGTTTTT'	TTTAAGATT	INS	AATCTTAAA	0.156	strelka	downstream_gene_variant	MODIFIER	CR43855	intron	Sema-1a	FBgn0011259
B241R39	2L	11038816	GA	'G'	AATCGAAAA	INS	AATCGAAAA	0.114	strelka	downstream_gene_variant	MODIFIER	CG18666	intron	Samuel	FBgn0032330
B241R39	2L	11223098	A	'ATCAGTAGATAGTGGT'	TGATATGAT	INS	ATCATATCA	0.242	strelka	intron_variant	MODIFIER	ab	intron	ab	FBgn0264442
B241R39	2L	11774041	AG	'A'	CGAGAGGGG	INS	CGAGAGGGG	0.1	strelka	intergenic_region	MODIFIER	Sfp33A1-CG14931	intergenic	intergenic	intergenic
B241R39	2L	12677432	A	'AAACAGGAAAATCGAATGGGTGGGAGG'	AAAAAGGGA	INS	TCCCTTTTT	0.156	strelka	upstream_gene_variant	MODIFIER	pdm2	intron	pdm2	FBgn0004394
B241R39	2L	12959252	A	'ACAATT'	AAACATGGA	INS	TCCATGTTT	0.158	strelka	intergenic_region	MODIFIER	CR44183-CG16800	intergenic	intergenic	intergenic
B241R39	2L	13419280	CA	'C'	AACGCAAAA	INS	AACGCAAAA	0.046	mutect2	5_prime_UTR_variant	MODIFIER	CG43850	intron	CG42784	FBgn0263354
B241R39	2L	15024427	GA	'G'	AAAGGAAAA	INS	AAAGGAAAA	0.0617	strelka	upstream_gene_variant	MODIFIER	CG33310	intron	GABA-B-R1	FBgn0260446
B241R39	2L	15078121	GAATGTTTACACATTTTAGTTGTGTATTTTGAGCAA	'G'	TTGCGAATG	INS	TTGCGAATG	0.132	strelka	downstream_gene_variant	MODIFIER	vas	intron	CG15270	FBgn0028879
B241R39	2R	5009872	TA	'T'	TTTCTAAAA	INS	TTTCTAAAA	0.145	strelka	intron_variant	MODIFIER	Ir41a	intron	Ir41a	FBgn0040849
B241R39	2R	7721949	CG	'C'	GTGGCGGGG	INS	GTGGCGGGG	0.121	strelka	intron_variant	MODIFIER	CG18812	intron	CG18812	FBgn0042135
B241R39	2R	7754650	ACAC	'A'	AACGACACC	INS	AACGACACC	0.116	strelka	intron_variant	MODIFIER	CG30497	intron	CG30497	FBgn0050497
B241R39	2R	9333411	GCA	'G'	ACCAGCACA	INS	ACCAGCACA	0.0952	strelka	intron_variant	MODIFIER	CG13739	intron	CG13954	FBgn0033405
B241R39	2R	10594629	AT	'A'	TCGTATTTT	INS	TCGTATTTT	0.131	strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
B241R39	2R	10956444	G	'GGT'	GGGGGGGGT	INS	ACCCCCCCC	0.0833	strelka	intergenic_region	MODIFIER	CR45228-luna	intergenic	intergenic	intergenic
B241R39	2R	11531198	A	'AGTCAATTTAAAAAGTTAT'	CAATAGTGT	INS	ACACTATTG	0.133	strelka	upstream_gene_variant	MODIFIER	en	intergenic	intergenic	intergenic
B241R39	2R	14071326	G	'GGGT'	TGTTGGCCA	INS	TGGCCAACA	0.295	strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
B241R39	2R	16105356	TTA	'T'	TATATTAAA	INS	TATATTAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG8414	intron	Rho1	FBgn0014020
B241R39	2R	19050252	GA	'G'	ACTGGAAAA	INS	ACTGGAAAA	0.0893	strelka	downstream_gene_variant	MODIFIER	CG15116	intergenic	intergenic	intergenic
B241R39	3L	1103248	T	'TTA'	GCTTTTTAG	INS	GCTTTTTAG	0.167	strelka	upstream_gene_variant	MODIFIER	bab1	intergenic	intergenic	intergenic
B241R39	3L	2520695	TTTCCAGGCTGAAATTATGCAATTTATTTCAGTTCATCCGAAAG	'T'	CTTTTTTCC	INS	CTTTTTTCC	0.0889	strelka	downstream_gene_variant	MODIFIER	CR45170	intron	Spn	FBgn0010905
B241R39	3L	2617768	CCTT	'C'	TCCTCCTTC	INS	TCCTCCTTC	0.0526	mutect2	downstream_gene_variant	MODIFIER	CR45981	intron	Pxn	FBgn0011828
B241R39	3L	3620813	CTTAAAACACATTAACCTACAATATAGTAATACATTTT	'C'	GCTGCTTAA	INS	GCTGCTTAA	0.265	strelka	splice_acceptor_variant&splice_region_variant&intron_variant	HIGH	CG14974	intron	CG14974	FBgn0040694
B241R39	3L	6695784	CT	'C'	CTTTCTTTT	INS	CTTTCTTTT	0.082	strelka	upstream_gene_variant	MODIFIER	SP1173	intron	SP1173	FBgn0035710
B241R39	3L	6812016	CAACCT	'C'	ATAGCAACC	INS	ATAGCAACC	0.273	strelka	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
B241R39	3L	6812026	A	'AAGG'	TACTATCTT	INS	AAGATAGTA	0.273	strelka	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
B241R39	3L	7614514	AT	'A'	GTACATTTT	INS	GTACATTTT	0.138	strelka	intron_variant	MODIFIER	CG33275	intron	Pura	FBgn0035802
B241R39	3L	7723262	AACTT	'A'	GACTAACTT	INS	GACTAACTT	0.0462	mutect2	upstream_gene_variant	MODIFIER	Ank2	intron	CG7457	FBgn0035812
B241R39	3L	7811328	GT	'G'	TTCAGTTTT	INS	TTCAGTTTT	0.269	strelka	upstream_gene_variant	MODIFIER	CG32369	intergenic	intergenic	intergenic
B241R39	3L	8656437	GCA	'G'	CCTGGCACA	INS	CCTGGCACA	0.0533	strelka	intergenic_region	MODIFIER	Pex7-h	intergenic	intergenic	intergenic
B241R39	3L	8693063	A	'ACTAGGCTGG'	CGGAACTTT	INS	AAAGTTCCG	0.224	strelka	non_coding_transcript_exon_variant	MODIFIER	CR44526	ncRNA	CR44526	FBgn0265719
B241R39	3L	9189199	CT	'C'	CCGACTTTT	INS	CCGACTTTT	0.1	strelka	intergenic_region	MODIFIER	Rdl-Slc45-1	intergenic	intergenic	intergenic
B241R39	3L	9945767	G	'GA'	ATTAGAAAA	INS	TTTTCTAAT	0.2	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
B241R39	3L	11242582	GTGTATCTTGCAATGTATCTTGAAA	'G'	TGCAGTGTA	INS	TGCAGTGTA	0	consensus	upstream_gene_variant	MODIFIER	CR44718	intergenic	intergenic	intergenic
B241R39	3L	11335891	A	'AGCCC'	ACCCAACCT	INS	AGGTTGGGT	0.154	strelka	intergenic_region	MODIFIER	CR44723-CR45250	intergenic	intergenic	intergenic
B241R39	3L	11885748	AT	'A'	CCGTATTTT	INS	CCGTATTTT	0.0746	strelka	downstream_gene_variant	MODIFIER	CG14128	intron	CG44837	FBgn0266100
B241R39	3L	11940868	C	'CATTTCTTAAACATGA'	TACCCTGTC	INS	TACCCTGTC	0.138	strelka	upstream_gene_variant	MODIFIER	CG44837	intergenic	intergenic	intergenic
B241R39	3L	12123874	AT	'A'	TTGCATTTT	INS	TTGCATTTT	0.118	strelka	upstream_gene_variant	MODIFIER	CG34241	intron	yps	FBgn0022959
B241R39	3L	13080501	CATCT	'C'	CATCCATCT	INS	CATCCATCT	0.0577	mutect2	downstream_gene_variant	MODIFIER	CR43652	intergenic	intergenic	intergenic
B241R39	3L	14811018	GT	'G'	CCCAGTTTT	INS	CCCAGTTTT	0.0702	strelka	intron_variant	MODIFIER	CG17839	intron	CG17839	FBgn0036454
B241R39	3L	15543347	G	'GA'	AAGCGAAAA	INS	TTTTCGCTT	0.154	strelka	intron_variant	MODIFIER	CrebA	intron	CrebA	FBgn0004396
B241R39	3L	18823996	T	'TTACCCTTTTACCCTTTTACC'	CCTTTTTTT	INS	CCTTTTTTT	0.235	strelka	upstream_gene_variant	MODIFIER	CG14073	intron	Cat	FBgn0000261
B241R39	3L	23646801	CA	'C'	TTCTCAAAA	INS	TTCTCAAAA	0.174	strelka	intron_variant	MODIFIER	AGO3	intron	AGO3	FBgn0250816
B241R39	3L	23841838	TA	'T'	AATATAAAA	INS	AATATAAAA	0.146	strelka	intron_variant	MODIFIER	CG40470	intron	CG40470	FBgn0058470
B241R39	3R	3331791	AG	'A'	AAAAAGCTG	INS	AAAAAGCTG	0.119	strelka	intron_variant	MODIFIER	spok	intron	spok	FBgn0086917
B241R39	3R	6946104	CA	'C'	CAGCCAAAA	INS	CAGCCAAAA	0.0784	strelka	intron_variant	MODIFIER	Antp	intron	Antp	FBgn0260642
B241R39	3R	7568117	G	'GA'	ACCTGAAAA	INS	TTTTCAGGT	0.13	strelka	downstream_gene_variant	MODIFIER	CG34127	intergenic	intergenic	intergenic
B241R39	3R	8171764	A	'AT'	ATTCATTTT	INS	AAAATGAAT	0.0845	strelka	intron_variant	MODIFIER	grn	intron	grn	FBgn0001138
B241R39	3R	11450690	TA	'T'	TGCTTAAAA	INS	TGCTTAAAA	0.0806	strelka	upstream_gene_variant	MODIFIER	sals	intron	CG17230	FBgn0046225
B241R39	3R	14282882	AAAAT	'A'	GAGCAAAAT	INS	GAGCAAAAT	0	consensus	intron_variant	MODIFIER	trx	intron	trx	FBgn0003862
B241R39	3R	15300716	CT	'C'	TCAACTTTT	INS	TCAACTTTT	0.1	strelka	downstream_gene_variant	MODIFIER	Tm1	intron	Tm1	FBgn0003721
B241R39	3R	18143023	GTTGGTCGGT	'G'	GTTGGTTGG	INS	GTTGGTTGG	0.0476	mutect2	intergenic_region	MODIFIER	sr-CG14316	intergenic	intergenic	intergenic
B241R39	3R	19112622	C	'CTTTTGCAGT'	GTAGCTCGA	INS	GTAGCTCGA	0.229	strelka	intron_variant	MODIFIER	CG6040	intron	CG6040	FBgn0038679
B241R39	3R	20930408	GGCT	'G'	GGGGGGCTG	INS	GGGGGGCTG	0.125	strelka	disruptive_inframe_deletion	MODERATE	CG31191	5UTR	CG31191	FBgn0051191
B241R39	3R	21625079	TA	'T'	TGCATAAAA	INS	TGCATAAAA	0.0667	strelka	upstream_gene_variant	MODIFIER	mir-998	intron	E2f1	FBgn0011766
B241R39	3R	23436697	CA	'C'	ACGCCAAAA	INS	ACGCCAAAA	0.0877	strelka	intron_variant	MODIFIER	CG4374	intron	CG4374	FBgn0039078
B241R39	3R	24412108	T	'TGGATAC'	TCACTATGT	INS	TCACTATGT	0.19	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
B241R39	3R	24412112	T	'TCG'	TATGTATCC	INS	TATGTATCC	0.205	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
B241R39	3R	24412117	C	'CTGTACCCTAAT'	ATCCCTGGC	INS	ATCCCTGGC	0.211	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
B241R39	3R	24971083	CAA	'C'	CACACAACC	INS	CACACAACC	0.0702	mutect2	intergenic_region	MODIFIER	CG13646-tnc	intergenic	intergenic	intergenic
B241R39	3R	26001514	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.0824	strelka	upstream_gene_variant	MODIFIER	CG43116	ncRNA	CR45037	FBgn0266397
B241R39	3R	26525455	G	'GA'	TAAGGAAAA	INS	TTTTCCTTA	0.148	strelka	downstream_gene_variant	MODIFIER	CR45226	intron	plum	FBgn0039431
B241R39	3R	29640558	TTTGA	'T'	AAAATTTGA	INS	AAAATTTGA	0.2	strelka	intron_variant	MODIFIER	Dop1R2	intron	Dop1R2	FBgn0266137
B241R39	3R	30181416	ACTTGAAAAGCAAATCACATTGC	'A'	TTGCACTTG	INS	TTGCACTTG	0.133	strelka	3_prime_UTR_variant	MODIFIER	Bet5	3UTR	Bet5	FBgn0260860
B241R39	3R	30822095	C	'CT'	TTGTCTTTT	INS	TTGTCTTTT	0.0952	strelka	upstream_gene_variant	MODIFIER	cindr	intron	cindr	FBgn0027598
B241R39	3R	31606322	GA	'G'	AGCCGAAAA	INS	AGCCGAAAA	0.087	strelka	upstream_gene_variant	MODIFIER	Med	intron	CycG	FBgn0039858
B241R39	4	891152	GT	'G'	TGATGTTTT	INS	TGATGTTTT	0.131	strelka	frameshift_variant	HIGH	unc-13	exon_3	unc-13	FBgn0025726
B241R39	X	1766972	GA	'G'	GGCGGAAAA	INS	GGCGGAAAA	0.122	strelka	intergenic_region	MODIFIER	Scgdelta-CG42666	intergenic	intergenic	intergenic
B241R39	X	5865317	AAC	'A'	CACCAACAC	INS	CACCAACAC	0.0938	strelka	upstream_gene_variant	MODIFIER	CG43137	intergenic	intergenic	intergenic
B241R39	X	7978023	GA	'G'	AGTCGAAAA	INS	AGTCGAAAA	0.133	strelka	intron_variant	MODIFIER	sn	intron	sn	FBgn0003447
B241R39	X	8947368	GT	'G'	GTGTGTGTG	INS	GTGTGTGTG	0	consensus	intron_variant	MODIFIER	rdgA	intron	rdgA	FBgn0261549
B241R39	X	8947370	GT	'G'	GTGTGTGTG	INS	GTGTGTGTG	0	consensus	intron_variant	MODIFIER	rdgA	intron	rdgA	FBgn0261549
B241R39	X	9542813	CA	'C'	AACCCAAAA	INS	AACCCAAAA	0.242	strelka	intron_variant	MODIFIER	CG32700	intron	CG32700	FBgn0267253
B241R39	X	10728101	GT	'G'	TTTCGTTTT	INS	TTTCGTTTT	0.31	strelka	intron_variant	MODIFIER	CG32676	intron	CG32676	FBgn0052676
B241R39	X	12423190	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.312	strelka	intergenic_region	MODIFIER	CR32652-Pkcdelta	intergenic	intergenic	intergenic
B241R39	X	13362908	CCA	'C'	AACCCCACA	INS	AACCCCACA	0.129	strelka	intron_variant	MODIFIER	Syt12	intron	Syt12	FBgn0261085
B241R39	X	15895601	A	'AAAAAC'	TTCAAAAAA	INS	TTTTTTGAA	0.154	strelka	downstream_gene_variant	MODIFIER	CG15916	intron	shi	FBgn0003392
B241R39	X	16104643	GA	'G'	GCCCGAAAA	INS	GCCCGAAAA	0.152	strelka	intron_variant	MODIFIER	CG42353	intron	CG42354	FBgn0259700
B241R39	X	17778274	CTG	'C'	TGTGCTGTG	INS	TGTGCTGTG	0.138	strelka	3_prime_UTR_variant	MODIFIER	unc-4	3UTR	unc-4	FBgn0024184
B241R39	X	17938059	CGT	'C'	TTAGCGTGT	INS	TTAGCGTGT	0.143	strelka	3_prime_UTR_variant	MODIFIER	Sh	3UTR	Sh	FBgn0003380
B241R39	X	18054550	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.161	strelka	intron_variant	MODIFIER	Sh	intron	Sh	FBgn0003380
B241R39	X	19683049	GCTCT	'G'	TCTGGCTCT	INS	TCTGGCTCT	0.0976	strelka	5_prime_UTR_variant	MODIFIER	dome	5UTR	dome	FBgn0043903
B241R39	X	22866388	TGCA	'T'	ATGATGCAG	INS	ATGATGCAG	0.109	strelka	disruptive_inframe_deletion	MODERATE	CG42346	exon_2	CG42346	FBgn0259677
B241R39	Y	94168	ATG	'A'	GGGCATGTG	INS	GGGCATGTG	0.121	strelka	intron_variant	MODIFIER	kl-5	intron	kl-5	FBgn0267433
B241R41-1	2L	543848	T	'TGCA'	CAGGTGCAG	INS	CAGGTGCAG	0.136	mutect2,strelka	conservative_inframe_insertion	MODERATE	Spp	exon_2	Spp	FBgn0031260
B241R41-1	2L	1579910	C	'CCA'	TCGCCTTTT	INS	TCGCCTTTT	0.103	strelka	downstream_gene_variant	MODIFIER	CG10869	intron	haf	FBgn0261509
B241R41-1	2L	1976664	GCT	'G'	TGCTGCTGG	INS	TGCTGCTGG	0.0909	mutect2	frameshift_variant	HIGH	CG15356	exon	CG15356	FBgn0031377
B241R41-1	2L	2823196	TA	'T'	CCCCTAAAA	INS	CCCCTAAAA	0.121	strelka	downstream_gene_variant	MODIFIER	CG3123	intron	Duox	FBgn0283531
B241R41-1	2L	4752514	CA	'C'	TATTCAGGA	INS	TATTCAGGA	0.269	strelka	intron_variant	MODIFIER	CG15630	intron	CG15630	FBgn0031627
B241R41-1	2L	5400502	CA	'C'	GATACATAA	INS	GATACATAA	0.35	strelka	upstream_gene_variant	MODIFIER	H15	intergenic	intergenic	intergenic
B241R41-1	2L	6340792	G	'GA'	TTTGGAACA	INS	TGTTCCAAA	0.286	strelka	upstream_gene_variant	MODIFIER	Pez	intron	Cpr	FBgn0015623
B241R41-1	2L	6340796	A	'ATTTTGTTAGT'	GAACATTTG	INS	CAAATGTTC	0.227	strelka	upstream_gene_variant	MODIFIER	Pez	intron	Cpr	FBgn0015623
B241R41-1	2L	6340814	TA	'T'	GTGATATAT	INS	GTGATATAT	0.227	strelka	upstream_gene_variant	MODIFIER	Pez	intron	Cpr	FBgn0015623
B241R41-1	2L	9514146	C	'CAATAAAAAAAAAAA'	AGCACAATA	INS	AGCACAATA	0.154	strelka	intron_variant	MODIFIER	CG33298	intron	CG33298	FBgn0032120
B241R41-1	2L	9654360	TC	'T'	TACTTCGGC	INS	TACTTCGGC	0.138	mutect2,strelka	frameshift_variant	HIGH	Apoltp	exon_17	Apoltp	FBgn0032136
B241R41-1	2L	9886608	A	'ATATATATAT'	AAAAAATAT	INS	ATATTTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	nAChRalpha6	intergenic	intergenic	intergenic
B241R41-1	2L	10202698	GT	'G'	AATCGTTTT	INS	AATCGTTTT	0.286	strelka	3_prime_UTR_variant	MODIFIER	CG34159	3UTR	CG34159	FBgn0085188
B241R41-1	2L	10901245	T	'TACC'	TAAGTAATT	INS	TAAGTAATT	0.344	strelka	downstream_gene_variant	MODIFIER	CR45724	intron	CG14070	FBgn0032313
B241R41-1	2L	12267948	CCAAGAA	'C'	TGCTCCAAG	INS	TGCTCCAAG	0.1	mutect2	upstream_gene_variant	MODIFIER	aret	intron	bru1	FBgn0000114
B241R41-1	2L	12617888	GCA	'G'	AAAAGCACA	INS	AAAAGCACA	0.105	strelka	upstream_gene_variant	MODIFIER	nub	intron	Ref2	FBgn0032439
B241R41-1	2L	13293348	T	'TCACTTTAGCGTTAAATATTTTCAA'	TCCCTTGAA	INS	TCCCTTGAA	0.294	strelka	3_prime_UTR_variant	MODIFIER	CG16824	3UTR	CG16824	FBgn0040973
B241R41-1	2L	18316568	C	'CAACA'	AACACAAAA	INS	AACACAAAA	0.125	mutect2,strelka	upstream_gene_variant	MODIFIER	CR44489	intergenic	intergenic	intergenic
B241R41-1	2L	18738201	AT	'A'	GCTGATTTT	INS	GCTGATTTT	0.148	strelka	upstream_gene_variant	MODIFIER	CG15167	intergenic	intergenic	intergenic
B241R41-1	2L	19794163	CT	'C'	AGTCCTTTT	INS	AGTCCTTTT	0.206	strelka	3_prime_UTR_variant	MODIFIER	fs(2)ltoPP43	3UTR	fs(2)ltoPP43	FBgn0004811
B241R41-1	2L	21717709	CT	'C'	AAAGCTTTT	INS	AAAGCTTTT	0.132	strelka	intron_variant	MODIFIER	CG31619	intron	nolo	FBgn0051619
B241R41-1	2R	1897190	CGTCTGT	'C'	CGGACGTCT	INS	CGGACGTCT	0.13	strelka	intron_variant	MODIFIER	CG17684	intron	CG17684	FBgn0263780
B241R41-1	2R	3522218	C	'CA'	TCAACAAAA	INS	TCAACAAAA	0.308	strelka	downstream_gene_variant	MODIFIER	CR41501	intergenic	intergenic	intergenic
B241R41-1	2R	3821488	GA	'G'	GAATGAAAA	INS	GAATGAAAA	0.147	strelka	intergenic_region	MODIFIER	RYa-uex	intergenic	intergenic	intergenic
B241R41-1	2R	4141956	GA	'G'	GAAGGAAAA	INS	GAAGGAAAA	0.143	strelka	intergenic_region	MODIFIER	CG17683-CG40127	intergenic	intergenic	intergenic
B241R41-1	2R	5437792	TC	'T'	TTACTCATG	INS	TTACTCATG	0.0741	strelka	intron_variant	MODIFIER	laccase2	intron	laccase2	FBgn0259247
B241R41-1	2R	5852052	C	'CA'	CGGGCAATC	INS	CGGGCAATC	0.111	mutect2	intron_variant	MODIFIER	dpr12	intron	dpr12	FBgn0085414
B241R41-1	2R	9625828	C	'CTA'	TATGCTATA	INS	TATGCTATA	0.344	strelka	upstream_gene_variant	MODIFIER	mir-307a	intron	Mmp2	FBgn0033438
B241R41-1	2R	11064574	AG	'A'	AAAAAGAAA	INS	AAAAAGAAA	0.25	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R41-1	2R	11066123	A	'ACCCCTCCCC'	TTCCACCAA	INS	TTGGTGGAA	0.2	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R41-1	2R	12674417	GA	'G'	ACGTGATAT	INS	ACGTGATAT	0.167	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG42708	5UTR	GLS	FBgn0261625
B241R41-1	2R	12963300	G	'GATTGAGTTCCAAAAGTCAAGTTGTATA'	AGTTGTTGT	INS	ACAACAACT	0.167	strelka	downstream_gene_variant	MODIFIER	Psc	intergenic	intergenic	intergenic
B241R41-1	2R	12974347	T	'TCGCCC'	GCATTCCCC	INS	GCATTCCCC	0.3	strelka	intron_variant	MODIFIER	Psc	intron	Psc	FBgn0005624
B241R41-1	2R	13990455	AAC	'A'	ACGTAACAC	INS	ACGTAACAC	0.0882	strelka	5_prime_UTR_variant	MODIFIER	RN-tre	5UTR	RN-tre	FBgn0020620
B241R41-1	2R	14814191	T	'TCATTAAA'	GTATTTAGA	INS	GTATTTAGA	0.111	strelka	downstream_gene_variant	MODIFIER	hui	intergenic	intergenic	intergenic
B241R41-1	2R	16489318	AAGAATTTATATTAAAGTCCCAAATCAGTTTT	'A'	GTTCAAGAA	INS	GTTCAAGAA	0.385	strelka	upstream_gene_variant	MODIFIER	CG15712	intergenic	intergenic	intergenic
B241R41-1	2R	17060824	T	'TTAA'	ACATTTAAC	INS	ACATTTAAC	0.478	strelka	upstream_gene_variant	MODIFIER	tef	intron	CG8950	FBgn0034186
B241R41-1	2R	17371621	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.129	strelka	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
B241R41-1	2R	18947604	CT	'C'	AATTCTTTG	INS	AATTCTTTG	0.316	strelka	5_prime_UTR_variant	MODIFIER	sano	exon_1	sano	FBgn0034408
B241R41-1	2R	19041358	GTAA	'G'	GCCTGTAAC	INS	GCCTGTAAC	0.4	mutect2	upstream_gene_variant	MODIFIER	CG15115	intergenic	intergenic	intergenic
B241R41-1	2R	19086894	GAC	'G'	ATGGGACAC	INS	ATGGGACAC	0.115	strelka	intron_variant	MODIFIER	5-HT1A	intron	5-HT1A	FBgn0004168
B241R41-1	2R	19174281	T	'TC'	AATTTCCTT	INS	AATTTCCTT	0.107	mutect2	upstream_gene_variant	MODIFIER	hppy	intron	CG10737	FBgn0034420
B241R41-1	2R	20650040	G	'GTATATATGTACATA'	ATAAGTACC	INS	GGTACTTAT	0.19	strelka	downstream_gene_variant	MODIFIER	DMAP1	intron	Lrt	FBgn0034540
B241R41-1	2R	20650893	GA	'G'	CACAGAAAA	INS	CACAGAAAA	0.15	strelka	downstream_gene_variant	MODIFIER	CG16799	intron	Lrt	FBgn0034540
B241R41-1	2R	23183830	AC	'A'	TCGAACAAA	INS	TCGAACAAA	0.111	strelka	upstream_gene_variant	MODIFIER	CG13539	intron	CG34371	FBgn0085400
B241R41-1	2R	23483027	TC	'T'	CTGATCCCG	INS	CTGATCCCG	0.115	strelka	intron_variant	MODIFIER	CG43795	intron	CG43795	FBgn0264339
B241R41-1	2R	24635593	T	'TCG'	CCTTTTGCT	INS	CCTTTTGCT	0	consensus	upstream_gene_variant	MODIFIER	CR43787	intron	CG13594	FBgn0035041
B241R41-1	3L	641849	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	CR43423	ncRNA	CR43334	FBgn0263039
B241R41-1	3L	1036012	CTA	'C'	AAATCTATC	INS	AAATCTATC	0.103	strelka	upstream_gene_variant	MODIFIER	trio	intron	CG9205	FBgn0035181
B241R41-1	3L	1130790	GGA	'G'	AGTGGGAAA	INS	AGTGGGAAA	0.273	mutect2,strelka	intergenic_region	MODIFIER	bab1-bab2	intergenic	intergenic	intergenic
B241R41-1	3L	1253247	T	'TTATCCCATTTAGA'	TCTATCATC	INS	TCTATCATC	0.467	strelka	upstream_gene_variant	MODIFIER	CG9133	intron	CG9133	FBgn0035198
B241R41-1	3L	2130498	G	'GGT'	ATGTGTTTT	INS	AAAACACAT	0.105	strelka	intron_variant	MODIFIER	zormin	intron	zormin	FBgn0052311
B241R41-1	3L	3135533	CA	'C'	ACGGCAAAA	INS	ACGGCAAAA	0.208	strelka	upstream_gene_variant	MODIFIER	CR45819	intron	CG11537	FBgn0035400
B241R41-1	3L	4932205	AGTG	'A'	TGGAAGTGG	INS	TGGAAGTGG	0.136	strelka	upstream_gene_variant	MODIFIER	CR43627	intergenic	intergenic	intergenic
B241R41-1	3L	4944998	GA	'G'	CGGAGAAAA	INS	CGGAGAAAA	0.167	strelka	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
B241R41-1	3L	7302378	C	'CA'	CTATCAAAA	INS	CTATCAAAA	0.267	strelka	intron_variant	MODIFIER	unc-13-4A	intron	unc-13-4A	FBgn0035756
B241R41-1	3L	9407565	T	'TGGAAGG'	TGGATATGG	INS	TGGATATGG	0.167	strelka	3_prime_UTR_variant	MODIFIER	CG4022	3UTR	CG4022	FBgn0035986
B241R41-1	3L	9671845	CA	'C'	TGTGCAAAA	INS	TGTGCAAAA	0.167	strelka	intron_variant	MODIFIER	fry	intron	fry	FBgn0016081
B241R41-1	3L	9966142	GA	'G'	ACCCGAAAA	INS	ACCCGAAAA	0.0851	strelka	3_prime_UTR_variant	MODIFIER	CG34356	3UTR	CG34356	FBgn0085385
B241R41-1	3L	11154621	GC	'G'	GGATGCAGG	INS	GGATGCAGG	0.111	strelka	upstream_gene_variant	MODIFIER	CG6216	intron	CG32082	FBgn0052082
B241R41-1	3L	11303926	A	'AAAAAT'	TAAAATAAT	INS	ATTATTTTA	0.235	strelka	intergenic_region	MODIFIER	CG6175-CG7573	intergenic	intergenic	intergenic
B241R41-1	3L	11322557	CA	'C'	TAAACAAAT	INS	TAAACAAAT	0.136	strelka	upstream_gene_variant	MODIFIER	CG6168	intergenic	intergenic	intergenic
B241R41-1	3L	11555322	CA	'C'	AAAGCAAAA	INS	AAAGCAAAA	0.19	strelka	upstream_gene_variant	MODIFIER	Mob2	intron	Mob2	FBgn0259481
B241R41-1	3L	12101114	A	'AAC'	ACCAAACAA	INS	TTGTTTGGT	0.0909	mutect2	intergenic_region	MODIFIER	CG17154-l(3)j2D3	intergenic	intergenic	intergenic
B241R41-1	3L	17975951	CGAA	'C'	TCTGCGAAG	INS	TCTGCGAAG	0.148	strelka	upstream_gene_variant	MODIFIER	Eip75B	intron	Eip75B	FBgn0000568
B241R41-1	3L	18138241	C	'CT'	GCTCCTTTT	INS	GCTCCTTTT	0.121	strelka	upstream_gene_variant	MODIFIER	CR44669	intergenic	intergenic	intergenic
B241R41-1	3L	19460507	GA	'G'	GCTGGAAAA	INS	GCTGGAAAA	0.138	strelka	downstream_gene_variant	MODIFIER	CR45434	intergenic	intergenic	intergenic
B241R41-1	3L	23674271	C	'CA'	AATGCAAAT	INS	AATGCAAAT	0.143	strelka	intron_variant	MODIFIER	AGO3	intron	AGO3	FBgn0250816
B241R41-1	3L	25968054	C	'CA'	AAGTCAAAA	INS	AAGTCAAAA	0.19	strelka	intron_variant	MODIFIER	CG40178	intron	CG40178	FBgn0058178
B241R41-1	3L	26286443	T	'TA'	TTGTTAAAA	INS	TTGTTAAAA	0.292	strelka	intergenic_region	MODIFIER	CG40160-CG41284	intergenic	intergenic	intergenic
B241R41-1	3R	4546781	CT	'C'	AGTGCTTTT	INS	AGTGCTTTT	0.156	strelka	downstream_gene_variant	MODIFIER	Mur82C	intron	CG34357	FBgn0085386
B241R41-1	3R	4668142	GGAGGAGGA	'G'	AGGAGGAGG	INS	AGGAGGAGG	0.087	mutect2	intron_variant	MODIFIER	CG43427	intron	CG43427	FBgn0263346
B241R41-1	3R	5350579	AT	'A'	CACTATTCA	INS	CACTATTCA	0.143	strelka	upstream_gene_variant	MODIFIER	CG1161	intergenic	intergenic	intergenic
B241R41-1	3R	5468769	C	'CGT'	ACTACGTGG	INS	ACTACGTGG	0.2	mutect2	frameshift_variant	HIGH	CG12162	exon_3	POLDIP2	FBgn0037329
B241R41-1	3R	8208919	G	'GGCA'	GAAGGGCAG	INS	CTGCCCTTC	0.069	mutect2	upstream_gene_variant	MODIFIER	CheA84a	intergenic	intergenic	intergenic
B241R41-1	3R	9794429	AT	'A'	ATAGATCCA	INS	ATAGATCCA	0.143	strelka	frameshift_variant	HIGH	CG8516	exon_4	CG8516	FBgn0037757
B241R41-1	3R	10865730	G	'GTTTTTTTTTAGTTTTTT'	TGTGGTTTT	INS	AAAACCACA	0.2	strelka	upstream_gene_variant	MODIFIER	CG6574	intron	SelR	FBgn0267376
B241R41-1	3R	12043998	C	'CGT'	CCTGCGTGT	INS	CCTGCGTGT	0.185	strelka	downstream_gene_variant	MODIFIER	CG14736	intergenic	intergenic	intergenic
B241R41-1	3R	12914005	AT	'A'	GGATATTTT	INS	GGATATTTT	0.138	strelka	upstream_gene_variant	MODIFIER	CG10909	intergenic	intergenic	intergenic
B241R41-1	3R	13115946	CTG	'C'	GTGGCTGTG	INS	GTGGCTGTG	0.19	strelka	intron_variant	MODIFIER	timeout	intron	timeout	FBgn0038118
B241R41-1	3R	13524838	AAAAATCGCAGC	'A'	AAAAAAAAA	INS	AAAAAAAAA	0	consensus	upstream_gene_variant	MODIFIER	CG12538	intergenic	intergenic	intergenic
B241R41-1	3R	14081134	TGCA	'T'	ATGGTGCAG	INS	ATGGTGCAG	0.19	strelka	disruptive_inframe_deletion	MODERATE	foxo	exon_8	foxo	FBgn0038197
B241R41-1	3R	18157287	AT	'A'	TGTGATTTT	INS	TGTGATTTT	0.125	strelka	upstream_gene_variant	MODIFIER	CR45103	intergenic	intergenic	intergenic
B241R41-1	3R	18469833	GTGA	'G'	GCGAGTGAT	INS	GCGAGTGAT	0.192	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
B241R41-1	3R	18956420	A	'AAATTG'	TGATAACTT	INS	AAGTTATCA	0.167	strelka	intron_variant	MODIFIER	CG42613	intron	CG43732	FBgn0263983
B241R41-1	3R	18984371	CGT	'C'	TGCTCGTGT	INS	TGCTCGTGT	0.222	strelka	5_prime_UTR_variant	MODIFIER	gukh	5UTR	gukh	FBgn0026239
B241R41-1	3R	19867002	G	'GT'	TTGGGTTTT	INS	AAAACCCAA	0.25	strelka	3_prime_UTR_variant	MODIFIER	CG4562	3UTR	CG4562	FBgn0038740
B241R41-1	3R	21428393	C	'CCGGGGCA'	TGCTCCGGG	INS	TGCTCCGGG	0.364	strelka	intron_variant	MODIFIER	lbl	intron	lbl	FBgn0008651
B241R41-1	3R	21809522	TCATCAGCAGCAGCAG	'T'	ATCATCATC	INS	ATCATCATC	0.08	mutect2	upstream_gene_variant	MODIFIER	CASK	intron	CASK	FBgn0013759
B241R41-1	3R	23005584	GAC	'G'	GCCAGACAC	INS	GCCAGACAC	0.2	strelka	intron_variant	MODIFIER	CG34375	intron	CG34375	FBgn0085404
B241R41-1	3R	23104224	ATATGTACATAGAATACTTAAG	'A'	TGCGATATG	INS	TGCGATATG	0.256	strelka	downstream_gene_variant	MODIFIER	CG6738	intron	Cow	FBgn0039054
B241R41-1	3R	23865727	ATATTAC	'A'	TTTCATATT	INS	TTTCATATT	0.16	strelka	intron_variant	MODIFIER	Pli	intron	Pli	FBgn0025574
B241R41-1	3R	24887639	CA	'C'	TCGGCAAAA	INS	TCGGCAAAA	0.261	strelka	intron_variant	MODIFIER	CG31121	intron	CG31121	FBgn0051121
B241R41-1	3R	25482561	CT	'C'	TCGCCTTTT	INS	TCGCCTTTT	0.2	strelka	5_prime_UTR_variant	MODIFIER	XNP	5UTR	XNP	FBgn0039338
B241R41-1	3R	28045357	AAGCAGAAGC	'A'	GCAGAAGCA	INS	GCAGAAGCA	0.194	strelka	upstream_gene_variant	MODIFIER	CG34362	intron	CG34362	FBgn0085391
B241R41-1	3R	28168746	A	'ATTACTGATTTTTATTTG'	TAACATAGA	INS	TCTATGTTA	0.409	strelka	intron_variant	MODIFIER	CG34354	intron	CG34354	FBgn0085383
B241R41-1	3R	29122394	CTCT	'C'	CTTCCTCTT	INS	CTTCCTCTT	0.118	strelka	5_prime_UTR_variant	MODIFIER	yem	5UTR	yem	FBgn0005596
B241R41-1	3R	29750002	CAT	'C'	AAGACATTG	INS	AAGACATTG	0.115	strelka	frameshift_variant	HIGH	yata	exon_1	yata	FBgn0260990
B241R41-1	3R	30021972	GCA	'G'	CGCTGCACA	INS	CGCTGCACA	0.13	strelka	5_prime_UTR_variant	MODIFIER	Mgat2	exon_1	Mgat2	FBgn0039738
B241R41-1	3R	31152353	C	'CTATAT'	GTTGCTTAT	INS	GTTGCTTAT	0.19	strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
B241R41-1	3R	31360700	CGGA	'C'	CCAACGGAG	INS	CCAACGGAG	0.0833	mutect2	disruptive_inframe_deletion	MODERATE	CG34347	exon_14	CG34347	FBgn0085376
B241R41-1	3R	31522001	AGGC	'A'	AAGAAGGCG	INS	AAGAAGGCG	0.1	mutect2	non_coding_transcript_exon_variant	MODIFIER	CR45573	ncRNA	CR45573	FBgn0267133
B241R41-1	4	1229947	GT	'G'	GATTGTTTT	INS	GATTGTTTT	0.152	strelka	frameshift_variant	HIGH	Dyrk3	exon_3	Dyrk3	FBgn0027101
B241R41-1	X	1006740	TC	'T'	TCTCTCCCC	INS	TCTCTCCCC	0.136	strelka	downstream_gene_variant	MODIFIER	TfIIA-S-2	intergenic	intergenic	intergenic
B241R41-1	X	4352088	CTG	'C'	GTGTCTGTG	INS	GTGTCTGTG	0.2	strelka	intron_variant	MODIFIER	norpA	intron	norpA	FBgn0262738
B241R41-1	X	5204028	A	'AT'	GTGTATTTT	INS	AAAATACAC	0.167	mutect2	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
B241R41-1	X	6185249	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.308	strelka	intron_variant	MODIFIER	Ca-alpha1T	intron	Ca-alpha1T	FBgn0264386
B241R41-1	X	6731107	CTA	'C'	TACACTATT	INS	TACACTATT	0.2	mutect2	upstream_gene_variant	MODIFIER	CR43461	intron	CG3168	FBgn0029896
B241R41-1	X	9513743	CAAT	'C'	CGGACAATA	INS	CGGACAATA	0.3	strelka	downstream_gene_variant	MODIFIER	CG34028	intron	CG32700	FBgn0267253
B241R41-1	X	9763539	GA	'G'	ATGCGAAAA	INS	ATGCGAAAA	0.214	strelka	intergenic_region	MODIFIER	Sp1-CG1354	intergenic	intergenic	intergenic
B241R41-1	X	10879901	CA	'C'	AGACCATCC	INS	AGACCATCC	0.286	mutect2	frameshift_variant	HIGH	Ork1	exon	Ork1	FBgn0017561
B241R41-1	X	11147938	GT	'G'	TGCCGTTTT	INS	TGCCGTTTT	0.286	strelka	upstream_gene_variant	MODIFIER	Lint-1	intron	Ran	FBgn0020255
B241R41-1	X	11573022	TC	'T'	CTTCTCCTG	INS	CTTCTCCTG	0.333	mutect2	frameshift_variant	HIGH	CG11697	exon_1	CG11697	FBgn0030313
B241R41-1	X	12231947	GA	'G'	GCTTGAGGA	INS	GCTTGAGGA	0.167	mutect2	downstream_gene_variant	MODIFIER	CG32655	intron	Ten-a	FBgn0267001
B241R41-1	X	13362908	CCA	'C'	AACCCCACA	INS	AACCCCACA	0.2	strelka	intron_variant	MODIFIER	Syt12	intron	Syt12	FBgn0261085
B241R41-1	X	13548833	TA	'T'	GTAATAAAA	INS	GTAATAAAA	0.19	strelka	downstream_gene_variant	MODIFIER	Cpr12A	intergenic	intergenic	intergenic
B241R41-1	X	14289239	AGTG	'A'	GAGTAGTGG	INS	GAGTAGTGG	0.125	mutect2	disruptive_inframe_deletion	MODERATE	CG9400	exon_1	CG9400	FBgn0030562
B241R41-1	X	14961316	ATG	'A'	ATGTATGTG	INS	ATGTATGTG	0.176	strelka	intron_variant	MODIFIER	eag	intron	eag	FBgn0000535
B241R41-1	X	15079459	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.121	strelka	upstream_gene_variant	MODIFIER	Lsd-2	ncRNA	CR44662	FBgn0265873
B241R41-1	X	15609386	AT	'A'	TTTCATTTT	INS	TTTCATTTT	0.227	strelka	intron_variant	MODIFIER	sog	intron	sog	FBgn0003463
B241R41-1	X	15855763	TTG	'T'	GCATTTGAA	INS	GCATTTGAA	0.0952	mutect2	upstream_gene_variant	MODIFIER	UBL3	intron	Myb	FBgn0002914
B241R41-1	X	17215208	CAT	'C'	GAATCATAT	INS	GAATCATAT	0.25	strelka	upstream_gene_variant	MODIFIER	CG5162	intergenic	intergenic	intergenic
B241R41-1	X	17585730	TA	'T'	ACGATAAAA	INS	ACGATAAAA	0.19	strelka	upstream_gene_variant	MODIFIER	CG12992	intron	CG12991	FBgn0030847
B241R41-1	X	18451059	GCA	'G'	AAAAGCACA	INS	AAAAGCACA	0.188	strelka	intron_variant	MODIFIER	CG32547	intron	CG32547	FBgn0052547
B241R41-1	X	18763968	AGGAC	'A'	TAAGAGGAC	INS	TAAGAGGAC	0.118	mutect2	downstream_gene_variant	MODIFIER	CCKLR-17D3	intergenic	intergenic	intergenic
B241R41-1	X	22866294	GA	'G'	CAAGGAATC	INS	CAAGGAATC	0.25	strelka	frameshift_variant	HIGH	CG42346	exon_2	CG42346	FBgn0259677
B241R41-2	2L	31660	A	'AT'	TGATATTTG	INS	CAAATATCA	0.231	strelka	frameshift_variant	HIGH	Cda5	exon_8	Cda5	FBgn0051973
B241R41-2	2L	144009	TA	'T'	CGGCTAAAA	INS	CGGCTAAAA	0.167	strelka	frameshift_variant	HIGH	CG11454	exon	CG11454	FBgn0031224
B241R41-2	2L	249965	AGT	'A'	CGTGAGTGA	INS	CGTGAGTGA	0.133	mutect2	downstream_gene_variant	MODIFIER	CR44218	intron	kis	FBgn0266557
B241R41-2	2L	1235025	GT	'G'	AAATGTCGC	INS	AAATGTCGC	0.286	mutect2	intergenic_region	MODIFIER	CG42329-CG5397	intergenic	intergenic	intergenic
B241R41-2	2L	1245610	ATG	'A'	TCACATGTG	INS	TCACATGTG	0.6	strelka	downstream_gene_variant	MODIFIER	CG5397	intergenic	intergenic	intergenic
B241R41-2	2L	1633860	CA	'C'	CAGCCAAAA	INS	CAGCCAAAA	0.25	strelka	intergenic_region	MODIFIER	CR44603-CR45695	intergenic	intergenic	intergenic
B241R41-2	2L	2328062	T	'TAC'	GTTTTACAC	INS	GTTTTACAC	0.188	mutect2,strelka	intron_variant	MODIFIER	CG9967	intron	eys	FBgn0031414
B241R41-2	2L	3349572	ATG	'A'	ATTTATGTG	INS	ATTTATGTG	0.214	strelka	intron_variant	MODIFIER	E23	intron	E23	FBgn0020445
B241R41-2	2L	3357683	AC	'A'	AAACACCCC	INS	AAACACCCC	0.25	strelka	5_prime_UTR_variant	MODIFIER	CG8838	5UTR	CG8838	FBgn0031526
B241R41-2	2L	3427335	AT	'A'	ATAAATTTA	INS	ATAAATTTA	0.167	strelka	upstream_gene_variant	MODIFIER	pgant2	intergenic	intergenic	intergenic
B241R41-2	2L	3764822	GC	'G'	GAGGGCAAG	INS	GAGGGCAAG	0.25	strelka	frameshift_variant	HIGH	CG43707	exon_12	CG43707	FBgn0263846
B241R41-2	2L	3819187	C	'CG'	TTTCCGGTG	INS	TTTCCGGTG	0.286	mutect2	downstream_gene_variant	MODIFIER	CR44076	intergenic	intergenic	intergenic
B241R41-2	2L	4296545	CT	'C'	GACCCTGCC	INS	GACCCTGCC	0.182	mutect2	intron_variant	MODIFIER	tutl	intron	tutl	FBgn0010473
B241R41-2	2L	4510157	GGTT	'G'	ATATGGTTG	INS	ATATGGTTG	0.2	mutect2,strelka	conservative_inframe_deletion	MODERATE	dp	exon_47	dpy	FBgn0053196
B241R41-2	2L	4532734	CT	'C'	AGTGCTAGG	INS	AGTGCTAGG	0.6	mutect2,strelka	intron_variant	MODIFIER	dp	intron	dpy	FBgn0053196
B241R41-2	2L	4748177	C	'CA'	TCTCCATTT	INS	TCTCCATTT	0.188	strelka	intron_variant	MODIFIER	CG15630	intron	CG15630	FBgn0031627
B241R41-2	2L	4786204	CT	'C'	GACTCTCGA	INS	GACTCTCGA	0.182	mutect2	intron_variant	MODIFIER	CG15630	intron	CG15630	FBgn0031627
B241R41-2	2L	5299409	A	'AGAAAAACGTTTTTTTT'	CCACATTCA	INS	TGAATGTGG	0.545	strelka	upstream_gene_variant	MODIFIER	CR45730	intron	vri	FBgn0016076
B241R41-2	2L	5409631	G	'GA'	GCCAGAAAA	INS	TTTTCTGGC	0.231	strelka	intron_variant	MODIFIER	H15	intron	H15	FBgn0016660
B241R41-2	2L	5661955	G	'GAGT'	CTACGAGTA	INS	TACTCGTAG	0.182	mutect2	upstream_gene_variant	MODIFIER	CG31646	ncRNA	CR44821	FBgn0266068
B241R41-2	2L	5693275	GA	'G'	AACGGACAT	INS	AACGGACAT	0.286	mutect2	upstream_gene_variant	MODIFIER	CR44820	intergenic	intergenic	intergenic
B241R41-2	2L	5822932	A	'AGTGCAAC'	TGAGATATA	INS	TATATCTCA	0.364	strelka	upstream_gene_variant	MODIFIER	CG31644	intergenic	intergenic	intergenic
B241R41-2	2L	5822935	TA	'T'	GATATACCA	INS	GATATACCA	0.3	strelka	upstream_gene_variant	MODIFIER	CG31644	intergenic	intergenic	intergenic
B241R41-2	2L	6114511	CGT	'C'	GAGCCGTCA	INS	GAGCCGTCA	0.182	mutect2	upstream_gene_variant	MODIFIER	CG31642	intron	stai	FBgn0266521
B241R41-2	2L	6139437	TA	'T'	GGTTTAGCT	INS	GGTTTAGCT	0.214	mutect2,strelka	5_prime_UTR_variant	MODIFIER	CG13991	5UTR	CG13991	FBgn0031785
B241R41-2	2L	6169876	GT	'G'	TTTTGTTGC	INS	TTTTGTTGC	0.273	mutect2,strelka	intergenic_region	MODIFIER	CG13989-CG34380	intergenic	intergenic	intergenic
B241R41-2	2L	6668559	T	'TG'	GTGATGGGG	INS	GTGATGGGG	0.3	strelka	frameshift_variant	HIGH	cup	exon_3	cup	FBgn0000392
B241R41-2	2L	6790618	GT	'G'	TTATGTTGT	INS	TTATGTTGT	0.231	strelka	3_prime_UTR_variant	MODIFIER	nrv2	3UTR	nrv2	FBgn0015777
B241R41-2	2L	7071956	GT	'G'	TATTGTTGC	INS	TATTGTTGC	0.273	strelka	downstream_gene_variant	MODIFIER	CG11289	intron	Pvf2	FBgn0031888
B241R41-2	2L	7480089	TG	'T'	ACCGTGGGT	INS	ACCGTGGGT	0.231	strelka	frameshift_variant	HIGH	Ziz	exon_8	Ziz	FBgn0260486
B241R41-2	2L	8056731	GC	'G'	CGCTGCAGG	INS	CGCTGCAGG	0.333	mutect2,strelka	frameshift_variant	HIGH	poe	exon_11	poe	FBgn0011230
B241R41-2	2L	8208775	A	'AGT'	CTTGAGTGG	INS	CCACTCAAG	0.154	mutect2	frameshift_variant	HIGH	CG8419	exon	CG8419	FBgn0031999
B241R41-2	2L	8378397	CG	'C'	TTGCCGCTT	INS	TTGCCGCTT	0.333	mutect2	3_prime_UTR_variant	MODIFIER	Aats-ala	3UTR	AlaRS	FBgn0027094
B241R41-2	2L	8839223	G	'GT'	GTGGGTTTG	INS	CAAACCCAC	0.167	strelka	intergenic_region	MODIFIER	SoxN-CR45365	intergenic	intergenic	intergenic
B241R41-2	2L	9027101	A	'AAG'	CCATAAGAG	INS	CTCTTATGG	0.2	mutect2,strelka	upstream_gene_variant	MODIFIER	CG9582	ncRNA	CR44352	FBgn0265452
B241R41-2	2L	9126353	GT	'G'	GTTGGTTTT	INS	GTTGGTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	CR44616	intron	CG32982	FBgn0052982
B241R41-2	2L	9271549	A	'AC'	TATAACCCA	INS	TGGGTTATA	0.231	strelka	upstream_gene_variant	MODIFIER	Ggamma30A	intron	Ggamma30A	FBgn0267252
B241R41-2	2L	9811991	GC	'G'	TGTGGCAAC	INS	TGTGGCAAC	0.222	mutect2	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
B241R41-2	2L	10067928	T	'TAC'	GCTTTACAC	INS	GCTTTACAC	0.167	mutect2	downstream_gene_variant	MODIFIER	Spn31A	intron	CG44153	FBgn0265002
B241R41-2	2L	10149293	A	'AACC'	ACCCAACCA	INS	TGGTTGGGT	0.2	mutect2	intron_variant	MODIFIER	CG44153	intron	CG4839	FBgn0032187
B241R41-2	2L	10169757	TA	'T'	CTAGTACCC	INS	CTAGTACCC	0.4	mutect2	upstream_gene_variant	MODIFIER	CG13137	intron	CG44153	FBgn0265002
B241R41-2	2L	10170903	GA	'G'	AAAAGAAAA	INS	AAAAGAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	CG13137	intron	CG44153	FBgn0265002
B241R41-2	2L	10901245	T	'TACC'	TAAGTAATT	INS	TAAGTAATT	0.25	strelka	downstream_gene_variant	MODIFIER	CR45724	intron	CG14070	FBgn0032313
B241R41-2	2L	11071216	G	'GC'	TATCGCCCA	INS	TGGGCGATA	0.273	strelka	frameshift_variant	HIGH	CG14915	exon	CG14915	FBgn0032335
B241R41-2	2L	11328277	T	'TTTG'	CTTTTTTTT	INS	CTTTTTTTT	0.375	strelka	downstream_gene_variant	MODIFIER	CR44584	intergenic	intergenic	intergenic
B241R41-2	2L	11433685	C	'CA'	CAAACATTC	INS	CAAACATTC	0.188	strelka	downstream_gene_variant	MODIFIER	salm	intergenic	intergenic	intergenic
B241R41-2	2L	11447758	TCA	'T'	CCATTCACA	INS	CCATTCACA	0.429	strelka	upstream_gene_variant	MODIFIER	salm	intergenic	intergenic	intergenic
B241R41-2	2L	11641397	CA	'C'	TCAACAAAC	INS	TCAACAAAC	0.375	strelka	downstream_gene_variant	MODIFIER	CG6614	intergenic	intergenic	intergenic
B241R41-2	2L	12176843	GT	'G'	TGCAGTTGC	INS	TGCAGTTGC	0.333	strelka	frameshift_variant	HIGH	atilla	exon_2	atilla	FBgn0032422
B241R41-2	2L	12511367	GA	'G'	AATTGAAAA	INS	AATTGAAAA	0.214	strelka	downstream_gene_variant	MODIFIER	CR43051	intron	bun	FBgn0259176
B241R41-2	2L	12810891	GA	'G'	TATTGAATT	INS	TATTGAATT	0.25	strelka	upstream_gene_variant	MODIFIER	CR43818	intergenic	intergenic	intergenic
B241R41-2	2L	12916369	AG	'A'	GGTGAGATA	INS	GGTGAGATA	0.182	mutect2	frameshift_variant	HIGH	ACXC	exon	ACXC	FBgn0040508
B241R41-2	2L	13335581	AGT	'A'	TGTGAGTGT	INS	TGTGAGTGT	0.25	strelka	upstream_gene_variant	MODIFIER	CG43778	intergenic	intergenic	intergenic
B241R41-2	2L	13353294	T	'TTG'	CCTTTTGTG	INS	CCTTTTGTG	0.154	mutect2	downstream_gene_variant	MODIFIER	CG16826	intron	CG9395	FBgn0032506
B241R41-2	2L	13688921	CA	'C'	ATTGCAAAA	INS	ATTGCAAAA	0.158	strelka	intron_variant	MODIFIER	CG31814	intron	CG31814	FBgn0051814
B241R41-2	2L	13852596	T	'TC'	AATTTCCTG	INS	AATTTCCTG	0.214	strelka	downstream_gene_variant	MODIFIER	CG7916	intron	CenG1A	FBgn0028509
B241R41-2	2L	13917223	CA	'C'	TACACACCG	INS	TACACACCG	0.143	mutect2	frameshift_variant	HIGH	Ance-3	exon_5	Ance-3	FBgn0032536
B241R41-2	2L	14290025	T	'TA'	AAAATAAAA	INS	AAAATAAAA	0.231	strelka	upstream_gene_variant	MODIFIER	CR43639	intron	wb	FBgn0261563
B241R41-2	2L	14359834	TA	'T'	TCCATAGTC	INS	TCCATAGTC	0.286	mutect2	frameshift_variant	HIGH	Pgant35A	exon_2	CR43463	FBgn0266428
B241R41-2	2L	15041828	GT	'G'	CTCTGTTTG	INS	CTCTGTTTG	0.15	strelka	frameshift_variant	HIGH	Su(H)	exon_2	Su(H)	FBgn0004837
B241R41-2	2L	15117170	G	'GGA'	TACTGGAGA	INS	TCTCCAGTA	0.375	mutect2,strelka	frameshift_variant	HIGH	stc	exon_4	stc	FBgn0001978
B241R41-2	2L	15395859	GAGA	'G'	CGTGGAGAA	INS	CGTGGAGAA	0.125	mutect2	upstream_gene_variant	MODIFIER	CR44859	intergenic	intergenic	intergenic
B241R41-2	2L	16170278	CT	'C'	AAGCCTCGT	INS	AAGCCTCGT	0.176	strelka	5_prime_UTR_variant	MODIFIER	Ca-alpha1D	5UTR	Ca-alpha1D	FBgn0001991
B241R41-2	2L	17490870	CT	'C'	TTTACTGGG	INS	TTTACTGGG	0.176	mutect2	downstream_gene_variant	MODIFIER	CG43221	intron	qua	FBgn0003187
B241R41-2	2L	17596449	AT	'A'	AAACATTTT	INS	AAACATTTT	0.167	strelka	upstream_gene_variant	MODIFIER	CG6870	intron	Sytalpha	FBgn0261089
B241R41-2	2L	17960326	AT	'A'	AAAAATTTC	INS	AAAAATTTC	0.364	strelka	upstream_gene_variant	MODIFIER	CG5674	intergenic	intergenic	intergenic
B241R41-2	2L	18455250	CA	'C'	ACGGCAGTG	INS	ACGGCAGTG	0.3	mutect2,strelka	3_prime_UTR_variant	MODIFIER	Ntf-2r	3UTR	Ntf-2r	FBgn0032680
B241R41-2	2L	18843269	ACG	'A'	TTTGACGCA	INS	TTTGACGCA	0.111	mutect2	frameshift_variant	HIGH	CG33120	exon_3	CG33120	FBgn0053120
B241R41-2	2L	19052188	T	'TGA'	AGATTGAGA	INS	AGATTGAGA	0.167	mutect2	frameshift_variant	HIGH	Rpn3	exon_1	Rpn3	FBgn0261396
B241R41-2	2L	19290048	TA	'T'	CTGCTAAAA	INS	CTGCTAAAA	0.176	strelka	intergenic_region	MODIFIER	CR44190-CG17564	intergenic	intergenic	intergenic
B241R41-2	2L	19304412	TC	'T'	AACCTCCCT	INS	AACCTCCCT	0.333	strelka	upstream_gene_variant	MODIFIER	CG17564	intergenic	intergenic	intergenic
B241R41-2	2L	19767071	A	'AGCT'	GCGCAGCTG	INS	CAGCTGCGC	0.176	mutect2,strelka	conservative_inframe_insertion	MODERATE	bsh	exon_3	bsh	FBgn0000529
B241R41-2	2L	19802753	AT	'A'	GACTATTTT	INS	GACTATTTT	0.3	strelka	intron_variant	MODIFIER	sick	intron	sick	FBgn0263873
B241R41-2	2L	20004999	CT	'C'	ACAACTAAA	INS	ACAACTAAA	0.2	strelka	upstream_gene_variant	MODIFIER	CR44908	intron	CG43861	FBgn0264443
B241R41-2	2L	20246618	CT	'C'	TATCCTTCG	INS	TATCCTTCG	0.267	strelka	upstream_gene_variant	MODIFIER	CR40341	intergenic	intergenic	intergenic
B241R41-2	2L	20925312	C	'CGG'	CTTGCGGGA	INS	CTTGCGGGA	0.2	mutect2,strelka	frameshift_variant	HIGH	RPA2	exon_3	RPA2	FBgn0032906
B241R41-2	2L	20966627	AGT	'A'	CAACAGTGC	INS	CAACAGTGC	0.182	mutect2	3_prime_UTR_variant	MODIFIER	CG42238	exon_2	CG42238	FBgn0250867
B241R41-2	2L	21090560	GAT	'G'	CTTGGATAT	INS	CTTGGATAT	0.111	mutect2	frameshift_variant	HIGH	CG9259	exon	CG9259	FBgn0032913
B241R41-2	2L	21291813	GTT	'G'	TTATGTTAC	INS	TTATGTTAC	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	Gr39a	intron	Gr39a	FBgn0264556
B241R41-2	2L	22183717	AT	'A'	GGATATGTA	INS	GGATATGTA	0.235	strelka	frameshift_variant	HIGH	CG3635	3UTR	CG3635	FBgn0032981
B241R41-2	2L	22219144	C	'CT'	CTTGCTTTT	INS	CTTGCTTTT	0.556	strelka	upstream_gene_variant	MODIFIER	Ir40a	intergenic	intergenic	intergenic
B241R41-2	2L	22580490	CA	'C'	GAACCAAAG	INS	GAACCAAAG	0.214	strelka	frameshift_variant	HIGH	Slmap	exon_2	Slmap	FBgn0040011
B241R41-2	2L	22715852	GT	'G'	AAACGTTTT	INS	AAACGTTTT	0.333	strelka	intron_variant	MODIFIER	CG40006	intron	CG40006	FBgn0058006
B241R41-2	2R	503160	TAA	'T'	ATGCTAAAG	INS	ATGCTAAAG	0.357	mutect2	intron_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
B241R41-2	2R	556926	T	'TG'	TTAGTGTTA	INS	TTAGTGTTA	0.429	mutect2,strelka	intron_variant	MODIFIER	CG45781	intron	CG45781	FBgn0267428
B241R41-2	2R	730213	CT	'C'	GATTCTACT	INS	GATTCTACT	0.5	strelka	intergenic_region	MODIFIER	CG45781-CG40498	intergenic	intergenic	intergenic
B241R41-2	2R	3586755	C	'CGT'	AGTGCGTGT	INS	AGTGCGTGT	0.333	mutect2	downstream_gene_variant	MODIFIER	CR40461	intergenic	intergenic	intergenic
B241R41-2	2R	4224301	TA	'T'	TAATTAACG	INS	TAATTAACG	0.217	strelka	intergenic_region	MODIFIER	CG40127-IntS3	intergenic	intergenic	intergenic
B241R41-2	2R	4691910	CT	'C'	TCTTCTTTT	INS	TCTTCTTTT	0.25	strelka	frameshift_variant	HIGH	Nipped-B	exon	Nipped-B	FBgn0026401
B241R41-2	2R	5249826	T	'TC'	ATCATCCGT	INS	ATCATCCGT	0.4	mutect2	upstream_gene_variant	MODIFIER	CR41443	intron	Nipped-A	FBgn0053554
B241R41-2	2R	5942930	CT	'C'	ACGACTTTT	INS	ACGACTTTT	0.25	strelka	downstream_gene_variant	MODIFIER	CR44126	intergenic	intergenic	intergenic
B241R41-2	2R	6115115	CACATATTTTTT	'C'	TTATCACAT	INS	TTATCACAT	0.333	mutect2	intron_variant	MODIFIER	EcR	intron	EcR	FBgn0000546
B241R41-2	2R	6615589	ATC	'A'	GGCAATCCC	INS	GGCAATCCC	0.167	mutect2	frameshift_variant	HIGH	jing	exon_2	jing	FBgn0086655
B241R41-2	2R	6870450	A	'AT'	CTTAATTGC	INS	GCAATTAAG	0.167	strelka	upstream_gene_variant	MODIFIER	coro	intron	coro	FBgn0265935
B241R41-2	2R	7658895	ATT	'A'	CAGCATTTT	INS	CAGCATTTT	0.214	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG30495	3UTR	CG30495	FBgn0050495
B241R41-2	2R	7889249	GC	'G'	TAGGGCCCT	INS	TAGGGCCCT	0.158	strelka	upstream_gene_variant	MODIFIER	Dgk	intergenic	intergenic	intergenic
B241R41-2	2R	8394820	CAGA	'C'	TCAGCAGAA	INS	TCAGCAGAA	0.13	mutect2,strelka	downstream_gene_variant	MODIFIER	CG2121	intron	pdm3	FBgn0261588
B241R41-2	2R	8580394	GGTGGGTTAGTTA	'G'	TGTGGGTGG	INS	TGTGGGTGG	0.4	mutect2	upstream_gene_variant	MODIFIER	CG42326	intron	CG42326	FBgn0259226
B241R41-2	2R	8802506	T	'TGC'	TGTATGCGC	INS	TGTATGCGC	0.182	mutect2	intron_variant	MODIFIER	sns	intron	sns	FBgn0024189
B241R41-2	2R	8803383	CAT	'C'	CTTGCATAT	INS	CTTGCATAT	0.2	mutect2,strelka	intron_variant	MODIFIER	sns	intron	sns	FBgn0024189
B241R41-2	2R	9214670	A	'AG'	ATCCAGGGA	INS	TCCCTGGAT	0.158	strelka	downstream_gene_variant	MODIFIER	VhaAC45	exon_1	CR44451	FBgn0265644
B241R41-2	2R	9363435	AGCGT	'A'	TCAGAGCGT	INS	TCAGAGCGT	0.308	mutect2,strelka	upstream_gene_variant	MODIFIER	CG12158	intron	CG13954	FBgn0033405
B241R41-2	2R	9615975	TTAG	'T'	TAGTTTAGT	INS	TAGTTTAGT	0.167	mutect2	downstream_gene_variant	MODIFIER	CR44069	intron	Mmp2	FBgn0033438
B241R41-2	2R	9737719	TG	'T'	GCACTGCAG	INS	GCACTGCAG	0.333	mutect2,strelka	intron_variant	MODIFIER	sqa	intron	sqa	FBgn0259678
B241R41-2	2R	9764330	ACG	'A'	GTTGACGTC	INS	GTTGACGTC	0.167	mutect2	upstream_gene_variant	MODIFIER	CR44205	intron	trpl	FBgn0005614
B241R41-2	2R	9849460	CG	'C'	CACACGTCC	INS	CACACGTCC	0.4	mutect2	frameshift_variant	HIGH	CG1671	exon	CG1671	FBgn0033454
B241R41-2	2R	10157950	T	'TG'	TCATTGGGC	INS	TCATTGGGC	0.214	strelka	frameshift_variant	HIGH	mlt	exon	mlt	FBgn0265512
B241R41-2	2R	10268253	T	'TC'	GAGTTCGTG	INS	GAGTTCGTG	0.25	strelka	frameshift_variant	HIGH	CG12910	exon	CG12910	FBgn0033502
B241R41-2	2R	10401041	AT	'A'	GGCTATTTT	INS	GGCTATTTT	0.231	strelka	intron_variant	MODIFIER	CG42732	intron	CG42732	FBgn0261698
B241R41-2	2R	10474686	A	'AT'	CAACATGGC	INS	GCCATGTTG	0.15	strelka	upstream_gene_variant	MODIFIER	CR45134	intron	whd	FBgn0261862
B241R41-2	2R	10611320	G	'GCA'	ACGAGCACG	INS	CGTGCTCGT	0.133	mutect2	frameshift_variant	HIGH	psq	5UTR	psq	FBgn0263102
B241R41-2	2R	11095922	TA	'T'	TAACTAAGC	INS	TAACTAAGC	0.188	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R41-2	2R	11630796	TAGCTTTCTGTTACATG	'T'	CGTGTAGCT	INS	CGTGTAGCT	0.2	mutect2	intron_variant	MODIFIER	CG9005	intron	CG9005	FBgn0033638
B241R41-2	2R	12586710	CGCG	'C'	TGGGCGCGC	INS	TGGGCGCGC	0.182	mutect2	upstream_gene_variant	MODIFIER	CR30055	intron	Sin3A	FBgn0022764
B241R41-2	2R	12935451	AAT	'A'	ATCGAATAG	INS	ATCGAATAG	0.3	mutect2,strelka	frameshift_variant	HIGH	CG13322	exon_3	SCCRO3	FBgn0033784
B241R41-2	2R	12960174	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.3	strelka	downstream_gene_variant	MODIFIER	CG13321	intergenic	intergenic	intergenic
B241R41-2	2R	12978701	AT	'A'	TAAAATAAA	INS	TAAAATAAA	0.286	mutect2	intron_variant	MODIFIER	Psc	intron	Psc	FBgn0005624
B241R41-2	2R	13724195	CT	'C'	TTCGCTAGC	INS	TTCGCTAGC	0.167	strelka	intron_variant	MODIFIER	fas	intron	fas	FBgn0000633
B241R41-2	2R	14547739	CT	'C'	CGGCCTTCA	INS	CGGCCTTCA	0.333	mutect2,strelka	upstream_gene_variant	MODIFIER	CG30076	intron	ttv	FBgn0265974
B241R41-2	2R	14989347	AT	'A'	AGCAATCCG	INS	AGCAATCCG	0.273	mutect2,strelka	frameshift_variant	HIGH	CG7639	exon_2	CG7639	FBgn0033989
B241R41-2	2R	15135741	T	'TC'	ACTTTCCGC	INS	ACTTTCCGC	0.15	strelka	intron_variant	MODIFIER	chn	intron	chn	FBgn0015371
B241R41-2	2R	15328019	GC	'G'	CCTTGCCCG	INS	CCTTGCCCG	0.375	strelka	frameshift_variant	HIGH	CG8160	exon	CG8160	FBgn0034011
B241R41-2	2R	15485598	A	'AT'	TTTAATGTA	INS	TACATTAAA	0.333	mutect2	upstream_gene_variant	MODIFIER	CG8180	intergenic	intergenic	intergenic
B241R41-2	2R	15743983	A	'AAG'	AACTAAGAG	INS	CTCTTAGTT	0.167	mutect2	intron_variant	MODIFIER	CG30089	intron	CG30089	FBgn0050089
B241R41-2	2R	15887470	A	'ACT'	TTTAACTTC	INS	GAAGTTAAA	0.222	mutect2	intron_variant	MODIFIER	sli	intron	sli	FBgn0264089
B241R41-2	2R	15898492	TA	'T'	CTTTTACAC	INS	CTTTTACAC	0.2	mutect2	upstream_gene_variant	MODIFIER	CG33463	intron	sli	FBgn0264089
B241R41-2	2R	16046201	CCA	'C'	TGTACCACA	INS	TGTACCACA	0.2	strelka	3_prime_UTR_variant	MODIFIER	SP2353	3UTR	SP2353	FBgn0034070
B241R41-2	2R	16242415	CT	'C'	TTCGCTTTT	INS	TTCGCTTTT	0.375	strelka	upstream_gene_variant	MODIFIER	krimp	intergenic	intergenic	intergenic
B241R41-2	2R	16630768	GAT	'G'	CGTCGATAT	INS	CGTCGATAT	0.111	mutect2	frameshift_variant	HIGH	Alk	exon_8	Alk	FBgn0040505
B241R41-2	2R	17060824	T	'TTAA'	ACATTTAAC	INS	ACATTTAAC	0.5	strelka	upstream_gene_variant	MODIFIER	tef	intron	CG8950	FBgn0034186
B241R41-2	2R	17226041	A	'AC'	GAAAACAAT	INS	ATTGTTTTC	0.188	strelka	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
B241R41-2	2R	18130093	CTTCA	'C'	CCCCCTTCA	INS	CCCCCTTCA	0.182	mutect2	3_prime_UTR_variant	MODIFIER	Dip3	3UTR	Dlip3	FBgn0040465
B241R41-2	2R	18764593	C	'CA'	AGCGCAAAA	INS	AGCGCAAAA	0.3	strelka	upstream_gene_variant	MODIFIER	Jabba	intron	Mctp	FBgn0034389
B241R41-2	2R	18771547	A	'ATT'	TGTAATTTG	INS	CAAATTACA	0.25	mutect2,strelka	5_prime_UTR_variant	MODIFIER	Mctp	5UTR	Mctp	FBgn0034389
B241R41-2	2R	18860981	AT	'A'	GTAGATTCC	INS	GTAGATTCC	0.231	strelka	frameshift_variant	HIGH	Jheh3	exon	Jheh3	FBgn0034406
B241R41-2	2R	19146757	CTGT	'C'	CAAGCTGTT	INS	CAAGCTGTT	0.2	mutect2	downstream_gene_variant	MODIFIER	CR43399	intron	ena	FBgn0000578
B241R41-2	2R	19428382	CA	'C'	TATCCAGGA	INS	TATCCAGGA	0.158	strelka	upstream_gene_variant	MODIFIER	hts	intron	CalpA	FBgn0012051
B241R41-2	2R	19841593	TG	'T'	CCCTTGGAG	INS	CCCTTGGAG	0.231	strelka	downstream_gene_variant	MODIFIER	CG44569	intergenic	intergenic	intergenic
B241R41-2	2R	19964250	C	'CG'	CCTGCGTTT	INS	CCTGCGTTT	0.333	mutect2	intergenic_region	MODIFIER	CG44623-CG8654	intergenic	intergenic	intergenic
B241R41-2	2R	20182585	CTCATGCTAGGTTATAG	'C'	TATACTCAT	INS	TATACTCAT	0.875	strelka	intergenic_region	MODIFIER	CR45229-CG16894	intergenic	intergenic	intergenic
B241R41-2	2R	20710639	A	'AT'	GAAAATTAA	INS	TTAATTTTC	0.188	strelka	intron_variant	MODIFIER	dpr	intron	dpr1	FBgn0040726
B241R41-2	2R	20881464	GT	'G'	GCCCGTGTT	INS	GCCCGTGTT	0.2	strelka	downstream_gene_variant	MODIFIER	Ipk1	intron	Cib2	FBgn0034558
B241R41-2	2R	21101726	GGA	'G'	GTGCGGAGA	INS	GTGCGGAGA	0.429	strelka	upstream_gene_variant	MODIFIER	CG4038	intergenic	intergenic	intergenic
B241R41-2	2R	21364679	GAC	'G'	CACAGACAC	INS	CACAGACAC	0.364	strelka	intron_variant	MODIFIER	cv-2	intron	cv-2	FBgn0000395
B241R41-2	2R	21411229	GA	'G'	ACTCGAAAA	INS	ACTCGAAAA	0.273	strelka	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
B241R41-2	2R	21867594	GA	'G'	AGGCGAAAA	INS	AGGCGAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	comr	intergenic	intergenic	intergenic
B241R41-2	2R	21944603	AGC	'A'	ACAGAGCGC	INS	ACAGAGCGC	0.182	mutect2	3_prime_UTR_variant	MODIFIER	Fili	3UTR	Fili	FBgn0085397
B241R41-2	2R	22202057	GT	'G'	GTGCGTCCC	INS	GTGCGTCCC	0.167	strelka	upstream_gene_variant	MODIFIER	snoRNA:Or-CD1	exon_2	CR45376	FBgn0266925
B241R41-2	2R	22281972	TAGCAA	'T'	ATATTAGCA	INS	ATATTAGCA	0.231	strelka	intron_variant	MODIFIER	dve	intron	dve	FBgn0020307
B241R41-2	2R	22406138	GC	'G'	GCTGGCAAT	INS	GCTGGCAAT	0.222	mutect2	upstream_gene_variant	MODIFIER	babos	intron	CG6044	FBgn0034725
B241R41-2	2R	22694753	GGT	'G'	CGACGGTGG	INS	CGACGGTGG	0.133	mutect2	frameshift_variant	HIGH	robo	exon	robo1	FBgn0005631
B241R41-2	2R	22979529	T	'TG'	CGTATGGGG	INS	CGTATGGGG	0.15	strelka	downstream_gene_variant	MODIFIER	CG32834	intergenic	intergenic	intergenic
B241R41-2	2R	23327729	GTCAA	'G'	AAAAGTCAA	INS	AAAAGTCAA	0.1	mutect2	upstream_gene_variant	MODIFIER	CG30416	intergenic	intergenic	intergenic
B241R41-2	2R	23703489	GT	'G'	AGCGGTCAC	INS	AGCGGTCAC	0.286	mutect2	frameshift_variant	HIGH	l(2)dtl	exon	l(2)dtl	FBgn0013548
B241R41-2	2R	23820569	AAAACCCTATAGC	'A'	GGGGAAAAC	INS	GGGGAAAAC	0.154	mutect2	5_prime_UTR_variant	MODIFIER	CG5549	exon_1	CG5549	FBgn0034911
B241R41-2	2R	23820616	ATATAT	'A'	TGCCATATA	INS	TGCCATATA	0.222	mutect2	upstream_gene_variant	MODIFIER	CG4797	intron	CG5549	FBgn0034911
B241R41-2	2R	24052379	ACTC	'A'	CAAAACTCC	INS	CAAAACTCC	0.231	strelka	upstream_gene_variant	MODIFIER	gammaSnap1	intron	sei	FBgn0003353
B241R41-2	2R	24052381	TCC	'T'	AAACTCCTC	INS	AAACTCCTC	0	consensus	upstream_gene_variant	MODIFIER	gammaSnap1	intron	sei	FBgn0003353
B241R41-2	2R	24052384	TC	'T'	CTCCTCTTG	INS	CTCCTCTTG	0	consensus	upstream_gene_variant	MODIFIER	gammaSnap1	intron	sei	FBgn0003353
B241R41-2	2R	24576868	TGAC	'T'	CTTTTGACA	INS	CTTTTGACA	0.133	mutect2	conservative_inframe_deletion	MODERATE	Start1	exon_10	Start1	FBgn0035028
B241R41-2	2R	24793201	C	'CGT'	TGTACGTGT	INS	TGTACGTGT	0.25	mutect2	5_prime_UTR_variant	MODIFIER	Reg-5	5UTR	Reg-5	FBgn0015801
B241R41-2	2R	25015371	AAGGAG	'A'	TGTAAAGGA	INS	TGTAAAGGA	0	consensus	upstream_gene_variant	MODIFIER	zip	intron	uzip	FBgn0004055
B241R41-2	2R	25015377	A	'ACT'	GGAGACTCC	INS	GGAGTCTCC	0	consensus	upstream_gene_variant	MODIFIER	zip	intron	uzip	FBgn0004055
B241R41-2	3L	201072	GCGAA	'G'	TAACGCGAA	INS	TAACGCGAA	0.25	mutect2,strelka	upstream_gene_variant	MODIFIER	rno	intron	mri	FBgn0035107
B241R41-2	3L	363887	CCT	'C'	GCCACCTCT	INS	GCCACCTCT	0.167	mutect2	frameshift_variant	HIGH	CG1233	exon_3	CG1233	FBgn0035137
B241R41-2	3L	830939	A	'AT'	CCGCATTGG	INS	CCAATGCGG	0.231	strelka	frameshift_variant	HIGH	CG13900	exon_5	CG13900	FBgn0035162
B241R41-2	3L	1253247	T	'TTATCCCATTTAGA'	TCTATCATC	INS	TCTATCATC	0.6	strelka	upstream_gene_variant	MODIFIER	CG9133	intron	CG9133	FBgn0035198
B241R41-2	3L	1399948	AT	'A'	TTACATTTC	INS	TTACATTTC	0.143	strelka	frameshift_variant	HIGH	CG32320	exon_4	CG32320	FBgn0052320
B241R41-2	3L	1410478	TC	'T'	CGTTTCCAC	INS	CGTTTCCAC	0.2	strelka	upstream_gene_variant	MODIFIER	CG9168	intron	Ptp61F	FBgn0267487
B241R41-2	3L	1731604	A	'ACTC'	GGGCACTCC	INS	GGAGTGCCC	0.133	mutect2	conservative_inframe_insertion	MODERATE	Oseg4	exon_8	Oseg4	FBgn0035264
B241R41-2	3L	2074226	CT	'C'	CGCACTTGA	INS	CGCACTTGA	0.167	strelka	frameshift_variant	HIGH	sls	exon_25	sls	FBgn0086906
B241R41-2	3L	2872663	C	'CT'	GTTTCTTTT	INS	GTTTCTTTT	0.214	strelka	5_prime_UTR_variant	MODIFIER	Tet	5UTR	Tet	FBgn0263392
B241R41-2	3L	3011396	A	'AT'	CATTATTTA	INS	TAAATAATG	0.188	strelka	3_prime_UTR_variant	MODIFIER	FMRFaR	3UTR	FMRFaR	FBgn0035385
B241R41-2	3L	3098565	A	'AAC'	GGTAAACAC	INS	GTGTTTACC	0.182	mutect2	upstream_gene_variant	MODIFIER	tRNA:CR32272	intron	Cht7	FBgn0035398
B241R41-2	3L	3174635	C	'CG'	CGATCGGGT	INS	CGATCGGGT	0.188	strelka	frameshift_variant	HIGH	CG14964	exon	CG14964	FBgn0035410
B241R41-2	3L	3291165	AT	'A'	ATTAATTTT	INS	ATTAATTTT	0.211	strelka	upstream_gene_variant	MODIFIER	CG12009	intergenic	intergenic	intergenic
B241R41-2	3L	3947888	CAGTA	'C'	GAGGCAGTA	INS	GAGGCAGTA	0.25	mutect2	5_prime_UTR_variant	MODIFIER	CG10853	intergenic	intergenic	intergenic
B241R41-2	3L	4261692	TGGAG	'T'	AAATTGGAG	INS	AAATTGGAG	0.286	mutect2	3_prime_UTR_variant	MODIFIER	CG11586	3UTR	CG11586	FBgn0035520
B241R41-2	3L	4618436	GA	'G'	AATTGAGCC	INS	AATTGAGCC	0.3	mutect2,strelka	upstream_gene_variant	MODIFIER	CG32246	intron	Src64B	FBgn0262733
B241R41-2	3L	4795547	TA	'T'	AACCTACAC	INS	AACCTACAC	0.25	mutect2	upstream_gene_variant	MODIFIER	CR45821	intron	RhoGEF64C	FBgn0035574
B241R41-2	3L	5893408	T	'TG'	TGTGTGGGA	INS	TGTGTGGGA	0.429	strelka	upstream_gene_variant	MODIFIER	CG5592	intergenic	intergenic	intergenic
B241R41-2	3L	6016604	TAC	'T'	CGTATACAC	INS	CGTATACAC	0.286	mutect2	intron_variant	MODIFIER	PVRAP	intron	PVRAP	FBgn0052406
B241R41-2	3L	6027257	A	'AT'	TATAATTTG	INS	CAAATTATA	0.167	strelka	downstream_gene_variant	MODIFIER	PVRAP	intergenic	intergenic	intergenic
B241R41-2	3L	6103512	CT	'C'	TTCACTTTT	INS	TTCACTTTT	0.4	strelka	downstream_gene_variant	MODIFIER	CR46001	intron	Ets65A	FBgn0005658
B241R41-2	3L	6400494	C	'CA'	TTGCCAAAC	INS	TTGCCAAAC	0.125	strelka	upstream_gene_variant	MODIFIER	CG42747	intergenic	intergenic	intergenic
B241R41-2	3L	6476515	GT	'G'	CCATGTTTT	INS	CCATGTTTT	0.211	strelka	intron_variant	MODIFIER	CG42747	intron	CG42747	FBgn0261801
B241R41-2	3L	6652142	C	'CA'	AATTCACAC	INS	AATTCACAC	0.375	strelka	intergenic_region	MODIFIER	CR45239-eIF4E-4	intergenic	intergenic	intergenic
B241R41-2	3L	6986309	GT	'G'	ACAGGTTTC	INS	ACAGGTTTC	0.444	strelka	upstream_gene_variant	MODIFIER	CR46000	intergenic	intergenic	intergenic
B241R41-2	3L	7302378	C	'CA'	CTATCAAAA	INS	CTATCAAAA	0.556	strelka	intron_variant	MODIFIER	unc-13-4A	intron	unc-13-4A	FBgn0035756
B241R41-2	3L	8204005	GT	'G'	TGGTGTTTT	INS	TGGTGTTTT	0.158	strelka	upstream_gene_variant	MODIFIER	CG7366	intergenic	intergenic	intergenic
B241R41-2	3L	8310279	A	'AG'	CATTAGGGA	INS	TCCCTAATG	0.214	strelka	upstream_gene_variant	MODIFIER	Gr66a	ncRNA	CR45409	FBgn0266958
B241R41-2	3L	8578290	TC	'T'	AAACTCCCT	INS	AAACTCCCT	0.4	mutect2	5_prime_UTR_variant	MODIFIER	CG43078	exon_1	CG43078	FBgn0262508
B241R41-2	3L	8608919	AT	'A'	CCAGATTGG	INS	CCAGATTGG	0.333	mutect2	upstream_gene_variant	MODIFIER	CG5989	intron	CG6282	FBgn0035914
B241R41-2	3L	9407565	T	'TGGAAGGATGGATGG'	TGGATATGG	INS	TGGATATGG	0.429	strelka	3_prime_UTR_variant	MODIFIER	CG4022	3UTR	CG4022	FBgn0035986
B241R41-2	3L	9619723	CTG	'C'	TAATCTGCA	INS	TAATCTGCA	0.333	mutect2	upstream_gene_variant	MODIFIER	CG3335	intron	LanB2	FBgn0267348
B241R41-2	3L	10809907	CA	'C'	TATACAAAA	INS	TATACAAAA	0.3	strelka	upstream_gene_variant	MODIFIER	CR44347	intergenic	intergenic	intergenic
B241R41-2	3L	12191328	AG	'A'	TGCCAGATA	INS	TGCCAGATA	0.25	strelka	frameshift_variant	HIGH	Est-P	exon_1	Est-P	FBgn0000594
B241R41-2	3L	12701191	CTG	'C'	ATTGCTGTG	INS	ATTGCTGTG	0.286	strelka	intron_variant	MODIFIER	mirr	intron	mirr	FBgn0014343
B241R41-2	3L	12894408	AT	'A'	GGCTATCTG	INS	GGCTATCTG	0.167	mutect2	frameshift_variant	HIGH	CG14118	exon	CG14118	FBgn0036323
B241R41-2	3L	13050390	T	'TA'	CTTATAGGG	INS	CTTATAGGG	0.214	strelka	downstream_gene_variant	MODIFIER	Syx13	intergenic	intergenic	intergenic
B241R41-2	3L	13111520	AAC	'A'	AACAAACAG	INS	AACAAACAG	0.2	mutect2	upstream_gene_variant	MODIFIER	trn	intergenic	intergenic	intergenic
B241R41-2	3L	13467626	TG	'T'	GATGTGGTG	INS	GATGTGGTG	0.25	strelka	frameshift_variant	HIGH	CG10089	exon_5	CG10089	FBgn0036369
B241R41-2	3L	13789894	G	'GGT'	CATTGGTGT	INS	ACACCAATG	0.375	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
B241R41-2	3L	13973623	AT	'A'	CAATATCGA	INS	CAATATCGA	0.2	strelka	upstream_gene_variant	MODIFIER	CG13738	intergenic	intergenic	intergenic
B241R41-2	3L	14298253	AG	'A'	GGCCAGGTA	INS	GGCCAGGTA	0.15	strelka	intron_variant	MODIFIER	fz	intron	fz	FBgn0001085
B241R41-2	3L	14464792	C	'CA'	TAGCCAAAA	INS	TAGCCAAAA	0.5	strelka	intron_variant	MODIFIER	bbg	intron	bbg	FBgn0087007
B241R41-2	3L	14644353	CA	'C'	AAGGCAAGG	INS	AAGGCAAGG	0.4	mutect2	intron_variant	MODIFIER	dlp	intron	dlp	FBgn0041604
B241R41-2	3L	14679266	GCA	'G'	TCGAGCACA	INS	TCGAGCACA	0.214	strelka	upstream_gene_variant	MODIFIER	CG4914	intron	ome	FBgn0259175
B241R41-2	3L	14756751	T	'TGC'	CATTTGCGT	INS	CATTTGCGT	0.333	mutect2	downstream_gene_variant	MODIFIER	CG33260	intron	Trl	FBgn0013263
B241R41-2	3L	14758200	A	'AT'	GAGTATTTT	INS	AAAATACTC	0.2	strelka	upstream_gene_variant	MODIFIER	CG42507	intron	Trl	FBgn0013263
B241R41-2	3L	14774704	TA	'T'	AATATAAAG	INS	AATATAAAG	0.222	mutect2	downstream_gene_variant	MODIFIER	bmm	intron	mop	FBgn0036448
B241R41-2	3L	15501309	GA	'G'	CATCGAAAA	INS	CATCGAAAA	0.25	strelka	downstream_gene_variant	MODIFIER	CG13455	intron	CG7272	FBgn0036501
B241R41-2	3L	16118371	TA	'T'	CAGATACCC	INS	CAGATACCC	0.286	mutect2	frameshift_variant	HIGH	Taf4	exon_7	Taf4	FBgn0010280
B241R41-2	3L	16239309	GC	'G'	AAGGGCTCC	INS	AAGGGCTCC	0.273	mutect2,strelka	frameshift_variant	HIGH	l(3)72Dr	exon	l(3)72Dr	FBgn0263608
B241R41-2	3L	16329167	A	'AGGCG'	CACCAGGCG	INS	CGCCTGGTG	0.286	mutect2	frameshift_variant	HIGH	CG13058	exon	CG13058	FBgn0036610
B241R41-2	3L	16941030	CT	'C'	ATTCCTCTT	INS	ATTCCTCTT	0.5	strelka	upstream_gene_variant	MODIFIER	CG13022	intron	Cpr73D	FBgn0036680
B241R41-2	3L	17350382	CGAA	'C'	AAAACGAAG	INS	AAAACGAAG	0.25	mutect2	upstream_gene_variant	MODIFIER	Mip	intergenic	intergenic	intergenic
B241R41-2	3L	17547029	AG	'A'	TTGCAGGTA	INS	TTGCAGGTA	0.25	strelka	frameshift_variant	HIGH	Jon74E	exon	Jon74E	FBgn0023197
B241R41-2	3L	17550644	GA	'G'	TAAAGAATA	INS	TAAAGAATA	0.5	mutect2	frameshift_variant	HIGH	CG7542	exon	CG7542	FBgn0036738
B241R41-2	3L	17595142	CA	'C'	CACACAAAA	INS	CACACAAAA	0.6	strelka	intron_variant	MODIFIER	Eip74EF	intron	Eip74EF	FBgn0000567
B241R41-2	3L	17675480	TGTATATTTA	'T'	AGAGTGTAT	INS	AGAGTGTAT	0.182	mutect2	intron_variant	MODIFIER	CG34251	intron	CG34251	FBgn0085280
B241R41-2	3L	18072772	AAAG	'A'	GTGTAAAGA	INS	GTGTAAAGA	0.167	mutect2	conservative_inframe_deletion	MODERATE	CG44004	exon_2	CG44004	FBgn0264746
B241R41-2	3L	18169649	CA	'C'	TCAGCAAAA	INS	TCAGCAAAA	0.333	strelka	3_prime_UTR_variant	MODIFIER	hid	3UTR	hid	FBgn0003997
B241R41-2	3L	18921400	T	'TGCA'	CCATTGCAG	INS	CCATTGCAG	0.143	mutect2	conservative_inframe_insertion	MODERATE	CG3819	exon	CG3819	FBgn0036833
B241R41-2	3L	20231666	GT	'G'	TGAAGTAGT	INS	TGAAGTAGT	0.158	strelka	upstream_gene_variant	MODIFIER	CG13813	intergenic	intergenic	intergenic
B241R41-2	3L	20271862	CCA	'C'	TTCCCCACA	INS	TTCCCCACA	0.167	mutect2	downstream_gene_variant	MODIFIER	CG32228	intron	gogo	FBgn0052227
B241R41-2	3L	20325005	CT	'C'	AATTCTCGG	INS	AATTCTCGG	0.176	mutect2,strelka	upstream_gene_variant	MODIFIER	CR6434	intergenic	intergenic	intergenic
B241R41-2	3L	20465357	TA	'T'	TGTGTATGA	INS	TGTGTATGA	0.25	mutect2,strelka	splice_region_variant&intron_variant	LOW	CG42764	exon_2	CG42764	FBgn0261832
B241R41-2	3L	20502899	T	'TCA'	AAACTCACA	INS	AAACTCACA	0.118	mutect2	upstream_gene_variant	MODIFIER	CG17637	intron	CG32425	FBgn0052425
B241R41-2	3L	21096812	GT	'G'	CAAGGTTTT	INS	CAAGGTTTT	0.3	strelka	intron_variant	MODIFIER	ko	intron	ko	FBgn0020294
B241R41-2	3L	21238615	ATGGAG	'A'	TGGAATGGA	INS	TGGAATGGA	0.167	strelka	upstream_gene_variant	MODIFIER	Eip78C	intron	Eip78C	FBgn0004865
B241R41-2	3L	21651422	C	'CG'	CAGACGGGG	INS	CAGACGGGG	0.188	strelka	intron_variant	MODIFIER	CG43980	intron	CG43980	FBgn0264711
B241R41-2	3L	22195169	AGT	'A'	GGCAAGTGT	INS	GGCAAGTGT	0.231	strelka	upstream_gene_variant	MODIFIER	CR45972	intron	olf413	FBgn0037153
B241R41-2	3L	22238315	A	'ATG'	ATCAATGTG	INS	CACATTGAT	0.182	mutect2	intron_variant	MODIFIER	olf413	intron	olf413	FBgn0037153
B241R41-2	3L	22387642	AT	'A'	AATCATTAA	INS	AATCATTAA	0.176	strelka	intron_variant	MODIFIER	Ten-m	ncRNA	CR45962	FBgn0267624
B241R41-2	3L	22401224	T	'TC'	TCATTCCGT	INS	TCATTCCGT	0.231	strelka	intron_variant	MODIFIER	Ten-m	ncRNA	CR45962	FBgn0267624
B241R41-2	3L	22880947	T	'TTG'	GCCGTTGTG	INS	GCCGTTGTG	0.154	mutect2	3_prime_UTR_variant	MODIFIER	Ssl1	3UTR	Ssl1	FBgn0037202
B241R41-2	3L	25270007	CA	'C'	GCCGCAACA	INS	GCCGCAACA	0.214	strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
B241R41-2	3L	26662617	AT	'A'	CTCCATTTT	INS	CTCCATTTT	0.3	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
B241R41-2	3L	27664323	CT	'C'	CATACTTTG	INS	CATACTTTG	0.333	strelka	intergenic_region	MODIFIER	Dbp80-eIF-4B	intergenic	intergenic	intergenic
B241R41-2	3R	211364	T	'TC'	GTACTGGTC	INS	GTACTGGTC	0.333	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
B241R41-2	3R	754999	CT	'C'	GGTCCTTAT	INS	GGTCCTTAT	0.4	mutect2	intergenic_region	MODIFIER	CR41571-CG45784	intron	Myo81F	FBgn0267431
B241R41-2	3R	2134675	T	'TG'	CCATTGGAT	INS	CCATTGGAT	0.25	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
B241R41-2	3R	2517671	TAGTCCGG	'T'	CCGGTAGTC	INS	CCGGTAGTC	0.286	strelka	intergenic_region	MODIFIER	CG45784-CG45783	intron	Myo81F	FBgn0267431
B241R41-2	3R	2879797	G	'GAAC'	TAATGAAGA	INS	TCTTCATTA	0.2	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
B241R41-2	3R	3325448	TTGAC	'T'	TGTCTTGAC	INS	TGTCTTGAC	0.182	mutect2	intron_variant	MODIFIER	spok	intron	spok	FBgn0086917
B241R41-2	3R	3462130	ATC	'A'	CTCTATCTC	INS	CTCTATCTC	0.273	mutect2,strelka	frameshift_variant	HIGH	Parp	exon	Parp	FBgn0010247
B241R41-2	3R	3488285	TA	'T'	ATATTAAAA	INS	ATATTAAAA	0.273	strelka	intron_variant	MODIFIER	Parp	intron	Parp	FBgn0010247
B241R41-2	3R	3755392	AGTATG	'A'	TTCAAGTAT	INS	TTCAAGTAT	0.188	strelka	downstream_gene_variant	MODIFIER	CG41128	intergenic	intergenic	intergenic
B241R41-2	3R	4691737	AT	'A'	AATAATTTT	INS	AATAATTTT	0.333	strelka	upstream_gene_variant	MODIFIER	CG33927	intron	CG43427	FBgn0263346
B241R41-2	3R	4876538	A	'AGT'	GGTCAGTGT	INS	ACACTGACC	0.167	mutect2	frameshift_variant	HIGH	laf	exon	laf	FBgn0020280
B241R41-2	3R	4878271	G	'GGA'	TCCTGGAGA	INS	TCTCCAGGA	0.222	mutect2	frameshift_variant	HIGH	laf	exon_2	laf	FBgn0020280
B241R41-2	3R	5060118	A	'AAT'	CGTCAATAT	INS	ATATTGACG	0.182	mutect2	intergenic_region	MODIFIER	CR45588-corto	intergenic	intergenic	intergenic
B241R41-2	3R	5726662	GA	'G'	AAATGAAAT	INS	AAATGAAAT	0.188	strelka	downstream_gene_variant	MODIFIER	CR44924	intergenic	intergenic	intergenic
B241R41-2	3R	5827249	T	'TA'	TGATTAAAA	INS	TGATTAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CG2023	intergenic	intergenic	intergenic
B241R41-2	3R	6301616	TA	'T'	CAGGTAGCA	INS	CAGGTAGCA	0.2	mutect2	upstream_gene_variant	MODIFIER	Osi15	intergenic	intergenic	intergenic
B241R41-2	3R	6609907	C	'CG'	TTGGCGAAA	INS	TTGGCGAAA	0.25	strelka	upstream_gene_variant	MODIFIER	glob2	intergenic	intergenic	intergenic
B241R41-2	3R	7214164	A	'ATT'	ATTAATTTT	INS	AAAATTAAT	0.133	mutect2	downstream_gene_variant	MODIFIER	CG14606	intergenic	intergenic	intergenic
B241R41-2	3R	8073733	ACAAT	'A'	AAAAACAAT	INS	AAAAACAAT	0.333	mutect2,strelka	upstream_gene_variant	MODIFIER	snoRNA:Me18S-G423	intron	mAChR-B	FBgn0037546
B241R41-2	3R	8244558	CA	'C'	AACACATGT	INS	AACACATGT	0.273	mutect2,strelka	frameshift_variant	HIGH	CG33722	5UTR	CG18749	FBgn0042182
B241R41-2	3R	8463371	TC	'T'	GGACTCCCC	INS	GGACTCCCC	0.231	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
B241R41-2	3R	8464225	C	'CTT'	CTGGCTTTT	INS	CTGGCTTTT	0.2	mutect2	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
B241R41-2	3R	8844931	TG	'T'	TGTTTGGAA	INS	TGTTTGGAA	0.25	strelka	frameshift_variant	HIGH	pyd	exon_2	pyd	FBgn0262614
B241R41-2	3R	9487063	T	'TTC'	CTTGTTCTG	INS	CTTGTTCTG	0.0769	mutect2	5_prime_UTR_variant	MODIFIER	CG16779	exon_2	CG16779	FBgn0037698
B241R41-2	3R	9751343	GTCT	'G'	AGATGTCTT	INS	AGATGTCTT	0.2	mutect2	conservative_inframe_deletion	MODERATE	CG16908	exon	CG16908	FBgn0037741
B241R41-2	3R	10325621	G	'GCA'	GCACGCACA	INS	TGTGCGTGC	0.182	mutect2	frameshift_variant	HIGH	Bruce	exon_8	Bruce	FBgn0266717
B241R41-2	3R	10332569	T	'TC'	TTAATCCGG	INS	TTAATCCGG	0.231	strelka	frameshift_variant	HIGH	CG12818	exon	CG12818	FBgn0037809
B241R41-2	3R	10861210	TCC	'T'	GCCCTCCAC	INS	GCCCTCCAC	0.2	mutect2	frameshift_variant	HIGH	CG6574	exon_4	CG6574	FBgn0037846
B241R41-2	3R	11533080	A	'AAC'	ATAGAACAC	INS	GTGTTCTAT	0.143	mutect2	upstream_gene_variant	MODIFIER	CR45056	intergenic	intergenic	intergenic
B241R41-2	3R	12553943	T	'TCG'	CGCCTCGCC	INS	CGCCTCGCC	0.25	mutect2,strelka	frameshift_variant&splice_region_variant	HIGH	Octbeta2R	exon_5	Octbeta2R	FBgn0038063
B241R41-2	3R	12561687	AT	'A'	GTTTATTTT	INS	GTTTATTTT	0.158	strelka	5_prime_UTR_variant	MODIFIER	Octbeta2R	5UTR	Octbeta2R	FBgn0038063
B241R41-2	3R	13043327	C	'CGT'	ACGACGTGT	INS	ACGACGTGT	0.133	mutect2	frameshift_variant	HIGH	CG11670	exon_4	CG11670	FBgn0038114
B241R41-2	3R	13773914	GT	'G'	TCATGTTCT	INS	TCATGTTCT	0.273	strelka	downstream_gene_variant	MODIFIER	Cht5	intron	CG9297	FBgn0038181
B241R41-2	3R	13848823	CG	'C'	TCAACGTCA	INS	TCAACGTCA	0.2	mutect2	intergenic_region	MODIFIER	CG31495-CG14362	intergenic	intergenic	intergenic
B241R41-2	3R	13906090	C	'CA'	GCCCCAAAA	INS	GCCCCAAAA	0.273	mutect2,strelka	downstream_gene_variant	MODIFIER	ems	intergenic	intergenic	intergenic
B241R41-2	3R	13952812	GTT	'G'	CCAAGTTTT	INS	CCAAGTTTT	0.2	mutect2	upstream_gene_variant	MODIFIER	CG9926	intergenic	intergenic	intergenic
B241R41-2	3R	14106621	A	'AT'	GCATATTTT	INS	AAAATATGC	0.375	strelka	frameshift_variant	HIGH	CG12402	exon_2	CG12402	FBgn0038202
B241R41-2	3R	14925471	AAT	'A'	AGGCAATAA	INS	AGGCAATAA	0.2	mutect2	upstream_gene_variant	MODIFIER	CR45598	intergenic	intergenic	intergenic
B241R41-2	3R	14970128	CACACACACAA	'C'	CACACACAC	INS	CACACACAC	0.4	mutect2	intergenic_region	MODIFIER	CR45598-CR45599	intergenic	intergenic	intergenic
B241R41-2	3R	14997281	AAC	'A'	GAGAAACAA	INS	GAGAAACAA	0.143	mutect2	intergenic_region	MODIFIER	CR45598-CR45599	intergenic	intergenic	intergenic
B241R41-2	3R	15332009	C	'CCA'	TGATCCACA	INS	TGATCCACA	0.133	mutect2	frameshift_variant	HIGH	FK506-bp1	exon	FK506-bp1	FBgn0013269
B241R41-2	3R	15419460	TA	'T'	GGTCTAGAG	INS	GGTCTAGAG	0.182	mutect2	upstream_gene_variant	MODIFIER	mir-13b-1	exon_1	CR45911	FBgn0267571
B241R41-2	3R	15427445	AGT	'A'	CTTGAGTGT	INS	CTTGAGTGT	0.176	strelka	upstream_gene_variant	MODIFIER	CG6118	intron	CG6118	FBgn0038339
B241R41-2	3R	15740222	GCA	'G'	TCAAGCACA	INS	TCAAGCACA	0.25	strelka	upstream_gene_variant	MODIFIER	CG4520	intergenic	intergenic	intergenic
B241R41-2	3R	15816497	C	'CA'	GAAACAAAA	INS	GAAACAAAA	0.429	strelka	upstream_gene_variant	MODIFIER	CR45211	intron	alpha-Man-IIb	FBgn0026616
B241R41-2	3R	16589695	TC	'T'	TATATCTCC	INS	TATATCTCC	0.273	mutect2,strelka	upstream_gene_variant	MODIFIER	CG14892	intergenic	intergenic	intergenic
B241R41-2	3R	17318741	AC	'A'	AATGACGGG	INS	AATGACGGG	0.429	mutect2,strelka	downstream_gene_variant	MODIFIER	beat-IIa	intergenic	intergenic	intergenic
B241R41-2	3R	18188226	ACT	'A'	AATGACTCG	INS	AATGACTCG	0.267	mutect2,strelka	frameshift_variant	HIGH	CG12321	exon	CG12321	FBgn0038577
B241R41-2	3R	18490498	G	'GGT'	CCTTGGTAT	INS	ATACCAAGG	0.118	mutect2	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
B241R41-2	3R	18932426	A	'AAC'	TTTTAACAC	INS	GTGTTAAAA	0.5	mutect2	upstream_gene_variant	MODIFIER	Mpc1	intron	CG42613	FBgn0261262
B241R41-2	3R	19308404	AT	'A'	TGCGATTTT	INS	TGCGATTTT	0.308	mutect2,strelka	intron_variant	MODIFIER	Dl	intron	Dl	FBgn0000463
B241R41-2	3R	19424484	CT	'C'	AAGGCTATT	INS	AAGGCTATT	0.182	mutect2	frameshift_variant	HIGH	CG3517	exon	CG3517	FBgn0038706
B241R41-2	3R	19440730	A	'AGT'	TTCAAGTGT	INS	ACACTTGAA	0.176	mutect2,strelka	frameshift_variant	HIGH	CG31221	exon_3	CG31221	FBgn0051221
B241R41-2	3R	19683433	TGG	'T'	GCCCTGGGT	INS	GCCCTGGGT	0.182	mutect2	upstream_gene_variant	MODIFIER	Naam	intron	Naam	FBgn0051216
B241R41-2	3R	19880157	GT	'G'	AGACGTTTT	INS	AGACGTTTT	0.182	strelka	frameshift_variant	HIGH	Pk92B	exon_2	Ask1	FBgn0014006
B241R41-2	3R	20237455	T	'TG'	AATGTGGGC	INS	AATGTGGGC	0.214	strelka	downstream_gene_variant	MODIFIER	CR46043	intron	Nlg4	FBgn0083975
B241R41-2	3R	20341750	G	'GCA'	ACAAGCATG	INS	CATGCTTGT	0.12	mutect2,strelka	intron_variant	MODIFIER	Ir92a	intron	Ir92a	FBgn0038789
B241R41-2	3R	20767224	CA	'C'	TTCTCAAAA	INS	TTCTCAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CG31195	intron	Syp	FBgn0038826
B241R41-2	3R	21007117	A	'AC'	CGCCACCTA	INS	TAGGTGGCG	0.2	strelka	upstream_gene_variant	MODIFIER	CG10827	intron	Calx	FBgn0013995
B241R41-2	3R	21446452	CTCTG	'C'	CACTCTCTG	INS	CACTCTCTG	0.273	strelka	5_prime_UTR_variant	MODIFIER	lbe	5UTR	lbe	FBgn0011278
B241R41-2	3R	21618596	AGAG	'A'	GGAGAGAGG	INS	GGAGAGAGG	0.25	strelka	upstream_gene_variant	MODIFIER	CR44034	intron	InR	FBgn0283499
B241R41-2	3R	21905125	CTGCATTTCATTACTTTTTGGATT	'C'	ATTTCTGCA	INS	ATTTCTGCA	0.333	strelka	intron_variant	MODIFIER	CG6678	intron	CG6678	FBgn0038917
B241R41-2	3R	22089955	C	'CA'	CGAACAAAA	INS	CGAACAAAA	0.4	strelka	upstream_gene_variant	MODIFIER	CG5778	intergenic	intergenic	intergenic
B241R41-2	3R	22158426	AT	'A'	AAAAATTGC	INS	AAAAATTGC	0.286	mutect2	intron_variant	MODIFIER	SKIP	intron	SKIP	FBgn0051163
B241R41-2	3R	22800158	AT	'A'	AAAAATATA	INS	AAAAATATA	0.5	mutect2	upstream_gene_variant	MODIFIER	CG7031	intergenic	intergenic	intergenic
B241R41-2	3R	22974570	CGGAAATG	'C'	CAGCCGGAA	INS	CAGCCGGAA	0.222	mutect2	upstream_gene_variant	MODIFIER	CG17244	intergenic	intergenic	intergenic
B241R41-2	3R	23021423	TA	'T'	ATAGTATAT	INS	ATAGTATAT	0.273	strelka	3_prime_UTR_variant	MODIFIER	lmd	3UTR	lmd	FBgn0039039
B241R41-2	3R	23105927	G	'GA'	TGTGGGCCG	INS	CGGCCCACA	0.222	mutect2	downstream_gene_variant	MODIFIER	CG6738	intron	Cow	FBgn0039054
B241R41-2	3R	23681024	GA	'G'	AGACGATCC	INS	AGACGATCC	0.3	mutect2,strelka	frameshift_variant	HIGH	eIF-3p66	exon_2	eIF-3p66	FBgn0040227
B241R41-2	3R	23762534	CT	'C'	GAATCTATT	INS	GAATCTATT	0.2	strelka	upstream_gene_variant	MODIFIER	Hrd3	intron	CG10217	FBgn0039113
B241R41-2	3R	23807576	GT	'G'	ACTTGTGAA	INS	ACTTGTGAA	0.333	mutect2,strelka	frameshift_variant	HIGH	CG33111	intron	CG34355	FBgn0085384
B241R41-2	3R	23918773	AC	'A'	TGACACACG	INS	TGACACACG	0.167	mutect2	upstream_gene_variant	MODIFIER	CG31141	intron	sba	FBgn0016754
B241R41-2	3R	24255443	CA	'C'	TGTTCATGT	INS	TGTTCATGT	0.3	mutect2,strelka	frameshift_variant	HIGH	jar	exon_11	jar	FBgn0011225
B241R41-2	3R	24483420	CT	'C'	ATATCTAGG	INS	ATATCTAGG	0.222	mutect2	upstream_gene_variant	MODIFIER	nAChRalpha2	intergenic	intergenic	intergenic
B241R41-2	3R	24548282	C	'CA'	AAACCAAAA	INS	AAACCAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CG5789	intron	Esyt2	FBgn0266758
B241R41-2	3R	24981781	TG	'T'	TCGCTGGAA	INS	TCGCTGGAA	0.25	strelka	upstream_gene_variant	MODIFIER	tnc	intergenic	intergenic	intergenic
B241R41-2	3R	25050883	TG	'T'	TAGCTGCTA	INS	TAGCTGCTA	0.167	mutect2	5_prime_UTR_variant	MODIFIER	CG11791	5UTR	CG11791	FBgn0039266
B241R41-2	3R	25163570	A	'AGCT'	GAGGAGCTG	INS	CAGCTCCTC	0.167	mutect2	intergenic_region	MODIFIER	danr-lobo	intergenic	intergenic	intergenic
B241R41-2	3R	25391791	TG	'T'	TGGCTGGAT	INS	TGGCTGGAT	0.333	strelka	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
B241R41-2	3R	25868095	CG	'C'	TAACCGAGC	INS	TAACCGAGC	0.143	strelka	downstream_gene_variant	MODIFIER	Tsp96F	intron	CG5890	FBgn0039380
B241R41-2	3R	26492934	TC	'T'	CATATCCTA	INS	CATATCCTA	0.214	strelka	intron_variant	MODIFIER	plum	intron	plum	FBgn0039431
B241R41-2	3R	26540890	CA	'C'	TCAACACCT	INS	TCAACACCT	0.231	mutect2,strelka	downstream_gene_variant	MODIFIER	CR46084	intron	scrib	FBgn0263289
B241R41-2	3R	27243477	A	'AAC'	CTTAAACAC	INS	GTGTTTAAG	0.143	mutect2	frameshift_variant	HIGH	CG18766	exon_3	CG18766	FBgn0042111
B241R41-2	3R	27898986	TTTTTC	'T'	CTTTTTTTT	INS	CTTTTTTTT	0.429	mutect2	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
B241R41-2	3R	27969670	T	'TG'	GAGATGGTT	INS	GAGATGGTT	0.231	mutect2,strelka	frameshift_variant	HIGH	betaTub97EF	exon_4	betaTub97EF	FBgn0003890
B241R41-2	3R	27995986	AAC	'A'	CACTAACAC	INS	CACTAACAC	0.25	strelka	downstream_gene_variant	MODIFIER	CR46087	intergenic	intergenic	intergenic
B241R41-2	3R	28493406	A	'AAG'	GGCCAAGCA	INS	TGCTTGGCC	0.231	mutect2,strelka	frameshift_variant	HIGH	Dhc98D	exon_11	Dhc98D	FBgn0013813
B241R41-2	3R	28784737	GA	'G'	AGCTGAAAC	INS	AGCTGAAAC	0.231	strelka	upstream_gene_variant	MODIFIER	CG34295	intergenic	intergenic	intergenic
B241R41-2	3R	29093436	A	'AT'	ACTCATTTT	INS	AAAATGAGT	0.25	strelka	upstream_gene_variant	MODIFIER	CR45030	intron	CG11873	FBgn0039633
B241R41-2	3R	29438329	AT	'A'	TTCGATTGG	INS	TTCGATTGG	0.2	strelka	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
B241R41-2	3R	29607044	GT	'G'	TCACGTTTT	INS	TCACGTTTT	0.214	strelka	upstream_gene_variant	MODIFIER	Diedel2	intron	alph	FBgn0086361
B241R41-2	3R	29675117	CA	'C'	TCACCATGA	INS	TCACCATGA	0.2	strelka	frameshift_variant&splice_region_variant	HIGH	Bub3	exon_1	Bub3	FBgn0025457
B241R41-2	3R	29691061	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.3	strelka	upstream_gene_variant	MODIFIER	Obp99c	intergenic	intergenic	intergenic
B241R41-2	3R	29851704	A	'ACT'	AGCCACTCT	INS	AGAGTGGCT	0.167	mutect2	frameshift_variant	HIGH	Cad99C	exon_8	Cad99C	FBgn0039709
B241R41-2	3R	30814601	CAT	'C'	GAGCCATAT	INS	GAGCCATAT	0.154	mutect2	upstream_gene_variant	MODIFIER	cindr	intron	cindr	FBgn0027598
B241R41-2	3R	31678939	C	'CT'	TTGTCTCTC	INS	TTGTCTCTC	0.167	strelka	downstream_gene_variant	MODIFIER	CG1815	intron	CG11550	FBgn0039864
B241R41-2	4	1173237	CA	'C'	GTCTCAAGC	INS	GTCTCAAGC	0.286	mutect2	downstream_gene_variant	MODIFIER	Kif3C	intron	pho	FBgn0002521
B241R41-2	X	684926	A	'AGT'	AATGAGTGT	INS	ACACTCATT	0.333	strelka	upstream_gene_variant	MODIFIER	sdk	intergenic	intergenic	intergenic
B241R41-2	X	2171476	G	'GCT'	CAAGGCTCC	INS	GGAGCCTTG	0.182	mutect2	frameshift_variant	HIGH	CG3630	exon	CG3630	FBgn0023540
B241R41-2	X	5174459	CA	'C'	ATGCCAAAA	INS	ATGCCAAAA	0.429	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
B241R41-2	X	6743810	GCA	'G'	ATAGGCACA	INS	ATAGGCACA	0.333	strelka	upstream_gene_variant	MODIFIER	CG3168	exon_1	snoRNA:Psi28S-1232	FBgn0082997
B241R41-2	X	8092027	T	'TC'	CCTATCCAC	INS	CCTATCCAC	0.333	mutect2	5_prime_UTR_variant	MODIFIER	UbcE2H	exon_1	UbcE2H	FBgn0029996
B241R41-2	X	8212953	G	'GACA'	TCCAGACAA	INS	TTGTCTGGA	0.429	mutect2,strelka	upstream_gene_variant	MODIFIER	sdt	intron	sdt	FBgn0261873
B241R41-2	X	8290446	ATG	'A'	GTCCATGTG	INS	GTCCATGTG	0.364	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
B241R41-2	X	8606404	TA	'T'	AAACTATGA	INS	AAACTATGA	0.2	mutect2	upstream_gene_variant	MODIFIER	Caf1-180	intergenic	intergenic	intergenic
B241R41-2	X	8992114	G	'GT'	GCTTGTTTG	INS	CAAACAAGC	0.3	strelka	downstream_gene_variant	MODIFIER	mir-31b	ncRNA	CR43836	FBgn0264384
B241R41-2	X	9144560	G	'GA'	TCCCGAGTA	INS	TACTCGGGA	0.333	mutect2	frameshift_variant	HIGH	CG7065	exon_2	CG7065	FBgn0030091
B241R41-2	X	9150306	TA	'T'	GAGCTAAAG	INS	GAGCTAAAG	0.429	strelka	frameshift_variant	HIGH	dalao	exon	Bap111	FBgn0030093
B241R41-2	X	9327253	CACGGGTTAT	'C'	CCACCACGG	INS	CCACCACGG	0.25	mutect2,strelka	stop_lost&disruptive_inframe_deletion	HIGH	CG34449	3UTR	CG34449	FBgn0085478
B241R41-2	X	10651321	TG	'T'	TAAGTGGCT	INS	TAAGTGGCT	0.333	mutect2,strelka	intron_variant	MODIFIER	X11Lbeta	intron	X11Lbeta	FBgn0052677
B241R41-2	X	11627380	TTG	'T'	CGAATTGTG	INS	CGAATTGTG	0.6	strelka	intron_variant	MODIFIER	Ptp10D	intron	Ptp10D	FBgn0004370
B241R41-2	X	11703719	GCA	'G'	ACAAGCACA	INS	ACAAGCACA	0.429	strelka	3_prime_UTR_variant	MODIFIER	PhKgamma	3UTR	PhKgamma	FBgn0011754
B241R41-2	X	12492774	CA	'C'	ACTTCAAGG	INS	ACTTCAAGG	0.25	strelka	frameshift_variant	HIGH	Lsp1alpha	exon	Lsp1alpha	FBgn0002562
B241R41-2	X	13175268	C	'CA'	GCAGCAATC	INS	GCAGCAATC	0.6	strelka	upstream_gene_variant	MODIFIER	CG32640	intron	Lgr4	FBgn0085440
B241R41-2	X	13232999	G	'GA'	CTGTGAAAA	INS	TTTTCACAG	1	strelka	downstream_gene_variant	MODIFIER	CG32639	intron	mew	FBgn0004456
B241R41-2	X	13326033	GCCGC	'G'	CACCGCCGC	INS	CACCGCCGC	0.5	mutect2,strelka	frameshift_variant	HIGH	IP3K2	exon_2	IP3K2	FBgn0283680
B241R41-2	X	13832377	AGGTCGTAGGT	'A'	GGTCAGGTC	INS	GGTCAGGTC	0.667	mutect2	frameshift_variant	HIGH	AMPdeam	exon_5	AMPdeam	FBgn0052626
B241R41-2	X	15691133	AGCTG	'A'	AGCTAGCTG	INS	AGCTAGCTG	0.286	mutect2	upstream_gene_variant	MODIFIER	CG15599	exon_3	CR43132	FBgn0262606
B241R41-2	X	16465122	GT	'G'	GTGTGTTTT	INS	GTGTGTTTT	0.333	strelka	intron_variant	MODIFIER	para	intron	para	FBgn0264255
B241R41-2	X	16504327	AT	'A'	AGCGATTAT	INS	AGCGATTAT	0.333	mutect2	intron_variant	MODIFIER	para	intron	para	FBgn0264255
B241R41-2	X	16945705	G	'GT'	GCACGTTTT	INS	AAAACGTGC	0.667	strelka	upstream_gene_variant	MODIFIER	wus	intron	RhoGAP15B	FBgn0030808
B241R41-2	X	16962683	CCA	'C'	GTTTCCATC	INS	GTTTCCATC	0.375	mutect2,strelka	frameshift_variant	HIGH	CG9086	exon_5	Ubr1	FBgn0030809
B241R41-2	X	17624461	TA	'T'	GGATTAAAG	INS	GGATTAAAG	0.25	strelka	3_prime_UTR_variant	MODIFIER	stas	3UTR	stas	FBgn0030850
B241R41-2	X	18114338	AT	'A'	AGCGATCCT	INS	AGCGATCCT	0.667	mutect2	intron_variant	MODIFIER	wupA	intron	wupA	FBgn0283471
B241R41-2	X	18584047	CG	'C'	CCAGCGGAA	INS	CCAGCGGAA	0.667	mutect2	downstream_gene_variant	MODIFIER	CR43492	intergenic	intergenic	intergenic
B241R41-2	X	19596363	AAGG	'A'	TCGAAAGGA	INS	TCGAAAGGA	0.5	strelka	upstream_gene_variant	MODIFIER	RpS10b	intergenic	intergenic	intergenic
B241R43	2L	217985	CT	'C'	GCATCTGAA	INS	GCATCTGAA	0.136	strelka	frameshift_variant	HIGH	kis	exon_13	kis	FBgn0266557
B241R43	2L	1947369	G	'GC'	TCCGGCCTC	INS	GAGGCCGGA	0.115	strelka	upstream_gene_variant	MODIFIER	CG15357	intergenic	intergenic	intergenic
B241R43	2L	2183933	C	'CA'	CCCACAAAA	INS	CCCACAAAA	0.174	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31946	exon_1	CR43751	FBgn0265017
B241R43	2L	3757286	CGT	'C'	GGAGCGTGT	INS	GGAGCGTGT	0.143	mutect2	5_prime_UTR_variant	MODIFIER	CG43707	5UTR	CG43707	FBgn0263846
B241R43	2L	4598450	G	'GTAATTAAA'	AATTGCTGA	INS	TCAGCAATT	0.294	strelka	upstream_gene_variant	MODIFIER	dp	intron	dpy	FBgn0053196
B241R43	2L	4598453	G	'GTAAT'	TGCTGAAAT	INS	ATTTCAGCA	0.294	strelka	upstream_gene_variant	MODIFIER	dp	intron	dpy	FBgn0053196
B241R43	2L	5076147	ATT	'A'	AGGCATTTT	INS	AGGCATTTT	0.167	strelka	downstream_gene_variant	MODIFIER	RpL37A	intron	pgant5	FBgn0031681
B241R43	2L	5235011	CT	'C'	TCTGCTTTT	INS	TCTGCTTTT	0.174	strelka	intron_variant	MODIFIER	tkv	intron	tkv	FBgn0003716
B241R43	2L	5973945	CCA	'C'	AAAGCCACC	INS	AAAGCCACC	0.118	mutect2	upstream_gene_variant	MODIFIER	CR43465	intron	chic	FBgn0000308
B241R43	2L	6851190	A	'AC'	ATCCACCTA	INS	TAGGTGGAT	0.12	strelka	upstream_gene_variant	MODIFIER	Rca1	intergenic	intergenic	intergenic
B241R43	2L	7067474	CA	'C'	ATTGCAAAA	INS	ATTGCAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	Nuf2	intergenic	intergenic	intergenic
B241R43	2L	7538289	AT	'A'	AAAAATGAA	INS	AAAAATGAA	0.28	strelka	intron_variant	MODIFIER	RapGAP1	intron	RapGAP1	FBgn0264895
B241R43	2L	9255543	A	'AT'	CTTTATTGT	INS	ACAATAAAG	0.12	strelka	upstream_gene_variant	MODIFIER	aust	intergenic	intergenic	intergenic
B241R43	2L	11609656	T	'TTATTTTAGTTA'	TGGTTTTAA	INS	TGGTTTTAA	0.444	strelka	downstream_gene_variant	MODIFIER	spag4	intron	kek2	FBgn0015400
B241R43	2L	11609668	T	'TAGTTTAAAG'	ATTATACGT	INS	ATTATACGT	0.444	strelka	downstream_gene_variant	MODIFIER	spag4	intron	kek2	FBgn0015400
B241R43	2L	12806148	TC	'T'	GTTTTCCCC	INS	GTTTTCCCC	0.444	strelka	downstream_gene_variant	MODIFIER	CR43818	intergenic	intergenic	intergenic
B241R43	2L	13071079	GGT	'G'	GGTGGGTGT	INS	GGTGGGTGT	0.125	strelka	intergenic_region	MODIFIER	CG9932-CR44197	intergenic	intergenic	intergenic
B241R43	2L	15050462	AT	'A'	AGAGATTTT	INS	AGAGATTTT	0.115	strelka	frameshift_variant	HIGH	ck	exon_6	ck	FBgn0000317
B241R43	2L	16353015	CG	'C'	TCTGCGTCT	INS	TCTGCGTCT	0.143	strelka	5_prime_UTR_variant	MODIFIER	CG4455	5UTR	CG4455	FBgn0028506
B241R43	2L	20290991	GAAC	'G'	CCCAGAACA	INS	CCCAGAACA	0.12	strelka	upstream_gene_variant	MODIFIER	CG12617	intergenic	intergenic	intergenic
B241R43	2L	20953253	AGTT	'A'	GCACAGTTG	INS	GCACAGTTG	0.115	strelka	intergenic_region	MODIFIER	CR44606-CG42238	intergenic	intergenic	intergenic
B241R43	2L	23065040	A	'AGG'	GCAAAGGGT	INS	ACCCTTTGC	0.075	mutect2	upstream_gene_variant	MODIFIER	CR43242	intergenic	intergenic	intergenic
B241R43	2R	2774615	AAT	'A'	TTTTAATAT	INS	TTTTAATAT	0.16	strelka	intron_variant	MODIFIER	CG41378	intron	CG41378	FBgn0085638
B241R43	2R	2779129	TA	'T'	GTACTACTA	INS	GTACTACTA	0.152	mutect2,strelka	intron_variant	MODIFIER	CG41378	intron	CG41378	FBgn0085638
B241R43	2R	3282744	AG	'A'	GAGAAGGGT	INS	GAGAAGGGT	0.148	strelka	intergenic_region	MODIFIER	CG42596-CR41243	intergenic	intergenic	intergenic
B241R43	2R	5611143	CT	'C'	AACCCTTTT	INS	AACCCTTTT	0.108	strelka	downstream_gene_variant	MODIFIER	CG17508	intron	CG17508	FBgn0039970
B241R43	2R	8877284	TC	'T'	TCCTTCCGG	INS	TCCTTCCGG	0.13	strelka	frameshift_variant	HIGH	RyR	exon_16	RyR	FBgn0011286
B241R43	2R	9524346	GA	'G'	AACCGAAAA	INS	AACCGAAAA	0.174	strelka	intron_variant	MODIFIER	brp	intron	brp	FBgn0259246
B241R43	2R	10042779	GT	'G'	GGGGGTTGT	INS	GGGGGTTGT	0.312	mutect2,strelka	frameshift_variant	HIGH	CG34220	exon	CG34220	FBgn0085249
B241R43	2R	10832947	G	'GA'	AATGGAAAA	INS	TTTTCCATT	0.121	strelka	downstream_gene_variant	MODIFIER	CG7686	intron	CG12344	FBgn0033558
B241R43	2R	10886092	C	'CG'	AGTCCGGAA	INS	AGTCCGGAA	0.136	strelka	frameshift_variant	HIGH	CG18004	exon_2	CG18004	FBgn0033566
B241R43	2R	11577558	AT	'A'	TATGATTTT	INS	TATGATTTT	0.235	strelka	3_prime_UTR_variant	MODIFIER	tou	3UTR	tou	FBgn0033636
B241R43	2R	11596594	C	'CA'	TGTGCAAAA	INS	TGTGCAAAA	0.227	strelka	upstream_gene_variant	MODIFIER	tou	intron	tou	FBgn0033636
B241R43	2R	13484545	ATAT	'A'	AAAGATATG	INS	AAAGATATG	0.0952	mutect2	upstream_gene_variant	MODIFIER	arr	intron	cbc	FBgn0033842
B241R43	2R	14447253	GTGA	'G'	GATGGTGAT	INS	GATGGTGAT	0.188	strelka	intron_variant	MODIFIER	Oaz	intron	Oaz	FBgn0261613
B241R43	2R	14914113	AATG	'A'	GGTGAATGA	INS	GGTGAATGA	0.0952	mutect2	upstream_gene_variant	MODIFIER	CG10249	intron	Kank	FBgn0027596
B241R43	2R	15013568	T	'TC'	CTCGTCCCA	INS	CTCGTCCCA	0.13	strelka	upstream_gene_variant	MODIFIER	CG43101	intron	hbs	FBgn0029082
B241R43	2R	16483989	ATG	'A'	GTGTATGTG	INS	GTGTATGTG	0.0968	strelka	upstream_gene_variant	MODIFIER	CG33458	intergenic	intergenic	intergenic
B241R43	2R	16648104	GT	'G'	TTCCGTTTC	INS	TTCCGTTTC	0.2	strelka	frameshift_variant	HIGH	gprs	exon	gprs	FBgn0024232
B241R43	2R	18517471	CT	'C'	AATTCTTCA	INS	AATTCTTCA	0.0968	mutect2	intron_variant	MODIFIER	CG43066	intron	CG43066	FBgn0262476
B241R43	2R	20313757	CA	'C'	CAAACAAAA	INS	CAAACAAAA	0.364	strelka	5_prime_UTR_variant	MODIFIER	CG13868	exon_2	CG13868	FBgn0034501
B241R43	2R	20586672	CA	'C'	AGTCCAAAA	INS	AGTCCAAAA	0.114	strelka	frameshift_variant	HIGH	Nnf1a	exon_3	Nnf1a	FBgn0034523
B241R43	2R	20664048	GATT	'G'	TCCGGATTA	INS	TCCGGATTA	0.115	strelka	conservative_inframe_deletion	MODERATE	Fem-1	exon_3	Fem-1	FBgn0034542
B241R43	2R	21526129	GT	'G'	AAGTGTTGG	INS	AAGTGTTGG	0.176	mutect2,strelka	upstream_gene_variant	MODIFIER	CG30289	intron	Egfr	FBgn0003731
B241R43	2R	21943775	CG	'C'	CTGGCGGGA	INS	CTGGCGGGA	0.12	strelka	frameshift_variant	HIGH	Fili	exon	Fili	FBgn0085397
B241R43	2R	22592376	T	'TG'	TTGTTGGGT	INS	TTGTTGGGT	0.0976	strelka	frameshift_variant	HIGH	dnr1	exon_1	dnr1	FBgn0260866
B241R43	2R	22731560	GGT	'G'	TGTTGGTGT	INS	TGTTGGTGT	0.222	strelka	upstream_gene_variant	MODIFIER	jbug	intron	jbug	FBgn0028371
B241R43	2R	23561006	CCA	'C'	CAGACCACG	INS	CAGACCACG	0.0909	mutect2	frameshift_variant	HIGH	Pi3K59F	exon_2	Pi3K59F	FBgn0015277
B241R43	2R	24699328	TTA	'T'	ATCCTTATC	INS	ATCCTTATC	0.136	mutect2,strelka	3_prime_UTR_variant	MODIFIER	Mid1	3UTR	Mid1	FBgn0053988
B241R43	2R	25039115	T	'TACCTAAC'	TGTTTCATA	INS	TGTTTCATA	0.238	strelka	frameshift_variant	HIGH	Nplp1	exon	Nplp1	FBgn0035092
B241R43	3L	1084803	ACT	'A'	GCTCACTCT	INS	GCTCACTCT	0.111	strelka	intron_variant	MODIFIER	bab1	intron	bab1	FBgn0004870
B241R43	3L	2313932	A	'ATTTGTTAAGATGCTTAGAT'	TTTGACCAA	INS	TTGGTCAAA	0.16	strelka	downstream_gene_variant	MODIFIER	CR45427	intergenic	intergenic	intergenic
B241R43	3L	2327002	TA	'T'	ATTATAGCA	INS	ATTATAGCA	0.103	strelka	intron_variant	MODIFIER	MsR1	intron	MsR1	FBgn0035331
B241R43	3L	2942793	GAC	'G'	CACAGACAC	INS	CACAGACAC	0.12	strelka	intron_variant	MODIFIER	Shab	intron	Shab	FBgn0262593
B241R43	3L	3825605	AAGC	'A'	GCAAAAGCA	INS	GCAAAAGCA	0.167	strelka	disruptive_inframe_deletion	MODERATE	Rdh	exon	Rdh	FBgn0064227
B241R43	3L	4841312	T	'TG'	TTTCTGGGC	INS	TTTCTGGGC	0.12	strelka	upstream_gene_variant	MODIFIER	CG13707	intergenic	intergenic	intergenic
B241R43	3L	6794235	GA	'G'	AAGCGAAAA	INS	AAGCGAAAA	0.139	strelka	3_prime_UTR_variant	MODIFIER	vvl	3UTR	vvl	FBgn0086680
B241R43	3L	7293103	CACACACAA	'C'	CGAACACAC	INS	CGAACACAC	0.4	strelka	intron_variant	MODIFIER	unc-13-4A	intron	unc-13-4A	FBgn0035756
B241R43	3L	7825721	GTGT	'G'	GTTGGTGTT	INS	GTTGGTGTT	0.114	strelka	disruptive_inframe_deletion	MODERATE	Pdp1	exon_2	Pdp1	FBgn0016694
B241R43	3L	7849965	GA	'G'	GAAAGAAAA	INS	GAAAGAAAA	0.207	strelka	intron_variant	MODIFIER	Pdp1	intron	Pdp1	FBgn0016694
B241R43	3L	7943343	GT	'G'	GTACGTTTA	INS	GTACGTTTA	0.093	mutect2,strelka	upstream_gene_variant	MODIFIER	exex	intergenic	intergenic	intergenic
B241R43	3L	7959127	AT	'A'	TTCGATTTG	INS	TTCGATTTG	0.15	strelka	intergenic_region	MODIFIER	exex-RNaseX25	intergenic	intergenic	intergenic
B241R43	3L	8044689	A	'AG'	TAACAGGTA	INS	TACCTGTTA	0.182	strelka	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
B241R43	3L	8599592	T	'TTC'	TATTTTCAA	INS	TATTTTCAA	0.105	mutect2	3_prime_UTR_variant	MODIFIER	CG43078	3UTR	Nelf-E	FBgn0017430
B241R43	3L	10383702	C	'CG'	TGGACGGGT	INS	TGGACGGGT	0.13	strelka	upstream_gene_variant	MODIFIER	CR45245	intergenic	intergenic	intergenic
B241R43	3L	10771946	TC	'T'	TCTTTCCCG	INS	TCTTTCCCG	0.0882	mutect2	5_prime_UTR_variant	MODIFIER	CG43245	5UTR	CG43245	FBgn0262890
B241R43	3L	11162249	CCAG	'C'	GCAACCAGC	INS	GCAACCAGC	0.167	strelka	conservative_inframe_deletion	MODERATE	CG32082	exon	CG32082	FBgn0052082
B241R43	3L	12103268	GAAC	'G'	GCAGGAACA	INS	GCAGGAACA	0.0976	strelka	intergenic_region	MODIFIER	CG17154-l(3)j2D3	intergenic	intergenic	intergenic
B241R43	3L	12716071	GCAAA	'G'	GAAAGCAAA	INS	GAAAGCAAA	0.125	strelka	intergenic_region	MODIFIER	mirr-SmD1	intergenic	intergenic	intergenic
B241R43	3L	13742038	C	'CA'	TTGGCAATT	INS	TTGGCAATT	0.188	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
B241R43	3L	14624445	CG	'C'	TTCGCGGGC	INS	TTCGCGGGC	0.129	mutect2	downstream_gene_variant	MODIFIER	shd	intron	CG9628	FBgn0036433
B241R43	3L	15543042	A	'AGT'	TTCAAGTTA	INS	TAACTTGAA	0.12	mutect2,strelka	intron_variant	MODIFIER	CrebA	intron	CrebA	FBgn0004396
B241R43	3L	16084548	T	'TGC'	CTTGTGCCT	INS	CTTGTGCCT	0.0889	strelka	frameshift_variant	HIGH	CG13075	exon_2	CG13075	FBgn0036563
B241R43	3L	16479144	A	'AT'	TATTATTAT	INS	ATAATAATA	0.107	strelka	intron_variant	MODIFIER	CG33158	intron	aos	FBgn0004569
B241R43	3L	16544235	GC	'G'	CCTTGCGAC	INS	CCTTGCGAC	0.111	strelka	upstream_gene_variant	MODIFIER	CG43373	intergenic	intergenic	intergenic
B241R43	3L	17277918	GGT	'G'	AACGGGTGT	INS	AACGGGTGT	0.207	strelka	upstream_gene_variant	MODIFIER	CR45436	intergenic	intergenic	intergenic
B241R43	3L	18096257	C	'CGTTA'	GTAGCTCAT	INS	GTAGCTCAT	0.357	strelka	intron_variant	MODIFIER	CG13698	intron	CG13698	FBgn0036773
B241R43	3L	18676988	A	'AT'	CCCAATTGT	INS	ACAATTGGG	0.121	strelka	frameshift_variant	HIGH	GNBP1	exon_2	GNBP1	FBgn0040323
B241R43	3L	18772013	TA	'T'	GCTGTAATG	INS	GCTGTAATG	0.111	strelka	downstream_gene_variant	MODIFIER	CR45939	intron	ftz-f1	FBgn0001078
B241R43	3L	19172065	G	'GA'	GAACGAAAA	INS	TTTTCGTTC	0.182	strelka	upstream_gene_variant	MODIFIER	fz2	intron	fz2	FBgn0016797
B241R43	3L	19961212	GA	'G'	ATGGGAAAA	INS	ATGGGAAAA	0.136	strelka	intron_variant	MODIFIER	Ac76E	intron	Ac76E	FBgn0004852
B241R43	3L	22244572	CATT	'C'	AGAACATTT	INS	AGAACATTT	0.12	mutect2,strelka	3_prime_UTR_variant	MODIFIER	olf413	3UTR	olf413	FBgn0037153
B241R43	3L	24350724	GT	'G'	AAGCGTTTT	INS	AAGCGTTTT	0.093	strelka	intron_variant	MODIFIER	nvd	intron	nvd	FBgn0259697
B241R43	3R	2396620	T	'TC'	TCCTTCCAA	INS	TCCTTCCAA	0.2	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
B241R43	3R	2784825	CA	'C'	AATGCATGA	INS	AATGCATGA	0.125	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
B241R43	3R	6988665	AAG	'A'	TGGAAAGAG	INS	TGGAAAGAG	0.176	strelka	intron_variant	MODIFIER	Antp	intron	Antp	FBgn0260642
B241R43	3R	7716172	AT	'A'	AACGATTTT	INS	AACGATTTT	0.125	strelka	upstream_gene_variant	MODIFIER	CR44260	intergenic	intergenic	intergenic
B241R43	3R	8382527	ATATATG	'A'	ATATATATA	INS	ATATATATA	0.0741	mutect2	downstream_gene_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
B241R43	3R	8414078	TTC	'T'	CTCTTTCTC	INS	CTCTTTCTC	0.136	strelka	intron_variant	MODIFIER	CG45263	exon_1	CR46126	FBgn0267801
B241R43	3R	10349256	C	'CTCGCTGCTCGCTG'	GCAGCGAGG	INS	GCAGCGAGG	0.316	strelka	frameshift_variant	HIGH	CG31406	exon_2	CG31406	FBgn0051406
B241R43	3R	10349258	A	'ACCTC'	AGCGAGGTC	INS	GACCTCGCT	0.3	strelka	frameshift_variant	HIGH	CG31406	exon_2	CG31406	FBgn0051406
B241R43	3R	10612540	GCA	'G'	ATAAGCACA	INS	ATAAGCACA	0.167	strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
B241R43	3R	10688340	TA	'T'	ATAATAAAA	INS	ATAATAAAA	0.227	strelka	downstream_gene_variant	MODIFIER	CR44230	intron	Skeletor	FBgn0262717
B241R43	3R	11140193	AGT	'A'	CGTAAGTGT	INS	CGTAAGTGT	0.174	strelka	downstream_gene_variant	MODIFIER	CG4706	intergenic	intergenic	intergenic
B241R43	3R	11989615	ATG	'A'	CCATATGTG	INS	CCATATGTG	0.24	strelka	downstream_gene_variant	MODIFIER	Tk	intron	mfas	FBgn0260745
B241R43	3R	12009894	C	'CCCG'	GCATCCCGC	INS	GCATCCCGC	0.136	mutect2,strelka	conservative_inframe_insertion	MODERATE	KLHL18	exon_2	KLHL18	FBgn0037978
B241R43	3R	12309254	CT	'C'	ACATCTTTT	INS	ACATCTTTT	0.308	strelka	upstream_gene_variant	MODIFIER	CG4066	intergenic	intergenic	intergenic
B241R43	3R	14052061	CTTT	'C'	CGAGCTTTT	INS	CGAGCTTTT	0.158	strelka	upstream_gene_variant	MODIFIER	foxo	intergenic	intergenic	intergenic
B241R43	3R	16679717	CG	'C'	TCCTCGCCG	INS	TCCTCGCCG	0.2	strelka	intron_variant	MODIFIER	Ubx	intron	Ubx	FBgn0003944
B241R43	3R	17950510	C	'CCCCCT'	TTCTCCCCC	INS	TTCTCCCCC	0.211	strelka	intron_variant	MODIFIER	cpo	intron	cpo	FBgn0263995
B241R43	3R	18227928	AT	'A'	AGTGATCCT	INS	AGTGATCCT	0.12	strelka	upstream_gene_variant	MODIFIER	mTerf5	intron	Mdh2	FBgn0262559
B241R43	3R	19889224	G	'GC'	GTTAGCCGC	INS	GCGGCTAAC	0.148	mutect2	upstream_gene_variant	MODIFIER	ninaE	intergenic	intergenic	intergenic
B241R43	3R	20596071	A	'ACT'	ACCTACTCA	INS	TGAGTAGGT	0.15	mutect2,strelka	upstream_gene_variant	MODIFIER	CG4159	intron	bon	FBgn0023097
B241R43	3R	22266854	G	'GA'	GAAGGAGGG	INS	CCCTCCTTC	0.208	mutect2	intron_variant	MODIFIER	SKIP	intron	SKIP	FBgn0051163
B241R43	3R	22906760	TTG	'T'	GTTTTTGTG	INS	GTTTTTGTG	0.222	strelka	intron_variant	MODIFIER	klg	intron	klg	FBgn0017590
B241R43	3R	23207344	GTGC	'G'	TGCTGTGCT	INS	TGCTGTGCT	0.143	strelka	upstream_gene_variant	MODIFIER	fzo	intron	cnc	FBgn0262975
B241R43	3R	23320320	C	'CT'	CTTTCTTTT	INS	CTTTCTTTT	0.235	strelka	intron_variant	MODIFIER	pnt	intron	pnt	FBgn0003118
B241R43	3R	23360631	G	'GATT'	GCGAGATTA	INS	TAATCTCGC	0.1	mutect2	upstream_gene_variant	MODIFIER	ATPsyn-Cf6	intergenic	intergenic	intergenic
B241R43	3R	24125629	GC	'G'	CGCAGCTGC	INS	CGCAGCTGC	0.13	strelka	frameshift_variant	HIGH	Rootletin	exon_7	Root	FBgn0039152
B241R43	3R	24453874	TTG	'T'	TATTTTGTG	INS	TATTTTGTG	0.143	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
B241R43	3R	25858282	T	'TACA'	TTAATATAT	INS	TTAATATAT	0.282	strelka	downstream_gene_variant	MODIFIER	CG5886	intron	CG5890	FBgn0039380
B241R43	3R	25922436	CT	'C'	CTTTCTTTT	INS	CTTTCTTTT	0.176	strelka	frameshift_variant	HIGH	CG14546	exon_1	CG14546	FBgn0039395
B241R43	3R	26224728	A	'AATTAACCACACGCGAC'	TAGGATATT	INS	AATATCCTA	0.353	strelka	intergenic_region	MODIFIER	CR44320-CG12290	ncRNA	CR44320	FBgn0265379
B241R43	3R	27176844	ATT	'A'	TGCTATTTT	INS	TGCTATTTT	0.0952	mutect2	intron_variant	MODIFIER	Ser	intron	Ser	FBgn0004197
B241R43	3R	29347375	ATG	'A'	CTGTATGTG	INS	CTGTATGTG	0.0833	strelka	intergenic_region	MODIFIER	Cnx99A-CR45547	intergenic	intergenic	intergenic
B241R43	3R	29639337	CT	'C'	CGAACTTGC	INS	CGAACTTGC	0.111	strelka	intron_variant	MODIFIER	Dop1R2	intron	Dop1R2	FBgn0266137
B241R43	3R	30301138	C	'CTT'	AGCTCTTTT	INS	AGCTCTTTT	0.2	strelka	downstream_gene_variant	MODIFIER	CG34300	intron	hdc	FBgn0010113
B241R43	3R	30697862	T	'TG'	TTATTGGCC	INS	TTATTGGCC	0.115	strelka	upstream_gene_variant	MODIFIER	CG12069	ncRNA	CR46115	FBgn0283501
B241R43	3R	30904683	C	'CAGTCCACACAGTGGCAGAAAAAATAGCA'	GAAGCAGGG	INS	GAAGCAGGG	0.167	strelka	upstream_gene_variant	MODIFIER	CG33483	intergenic	intergenic	intergenic
B241R43	3R	31527629	AT	'A'	AGTGATTCG	INS	AGTGATTCG	0.136	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45573	intergenic	intergenic	intergenic
B241R43	3R	31762314	TA	'T'	ATTATACCG	INS	ATTATACCG	0.111	mutect2,strelka	upstream_gene_variant	MODIFIER	CG2187	intergenic	intergenic	intergenic
B241R43	4	292075	AT	'A'	CTTCATTTT	INS	CTTCATTTT	0.133	strelka	intron_variant	MODIFIER	Syt7	intron	Syt7	FBgn0039900
B241R43	X	1660553	AAC	'A'	AACAAACAC	INS	AACAAACAC	0.2	strelka	3_prime_UTR_variant	MODIFIER	br	3UTR	br	FBgn0283451
B241R43	X	1885393	C	'CAG'	CTGGCAGAT	INS	CTGGCAGAT	0.125	mutect2	frameshift_variant	HIGH	trr	exon_2	trr	FBgn0023518
B241R43	X	2743238	CA	'C'	GCCGCAAAA	INS	GCCGCAAAA	0.385	strelka	upstream_gene_variant	MODIFIER	crm	intron	kirre	FBgn0028369
B241R43	X	2861102	TA	'T'	TAGCTAATC	INS	TAGCTAATC	0.214	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
B241R43	X	3247986	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.273	strelka	upstream_gene_variant	MODIFIER	ng4	intron	dnc	FBgn0000479
B241R43	X	6204315	GCA	'G'	GCACGCACA	INS	GCACGCACA	0.158	strelka	upstream_gene_variant	MODIFIER	CG43090	intergenic	intergenic	intergenic
B241R43	X	7154431	A	'AGT'	AGTGAGTGT	INS	ACACTCACT	0.176	strelka	upstream_gene_variant	MODIFIER	CR32730	intron	CG9650	FBgn0029939
B241R43	X	7154621	ATG	'A'	GGATATGTG	INS	GGATATGTG	0.176	strelka	upstream_gene_variant	MODIFIER	CR32730	intron	CG9650	FBgn0029939
B241R43	X	7611675	GA	'G'	AATTGAAAA	INS	AATTGAAAA	0.235	strelka	intron_variant	MODIFIER	ct	intron	ct	FBgn0004198
B241R43	X	8139640	C	'CGT'	GCGACGTGT	INS	GCGACGTGT	0.125	mutect2	frameshift_variant	HIGH	Smox	exon	Smox	FBgn0025800
B241R43	X	8191120	GA	'G'	CCAGGAGCC	INS	CCAGGAGCC	0.154	mutect2	upstream_gene_variant	MODIFIER	sdt	intron	sdt	FBgn0261873
B241R43	X	9281983	A	'AT'	CCCTATTTC	INS	GAAATAGGG	0.167	mutect2,strelka	upstream_gene_variant	MODIFIER	lz	intron	c11.1	FBgn0040236
B241R43	X	9506473	TTC	'T'	GTTTTTCTC	INS	GTTTTTCTC	0.133	mutect2	3_prime_UTR_variant	MODIFIER	CG32700	exon_3	CG32700	FBgn0267253
B241R43	X	10344208	T	'TC'	TGCATCCCA	INS	TGCATCCCA	0.231	strelka	upstream_gene_variant	MODIFIER	snoRNA:U3:9B	intron	CG43740	FBgn0263997
B241R43	X	10397454	A	'ATG'	CGCCATGTA	INS	TACATGGCG	0.125	mutect2	intron_variant	MODIFIER	flw	intron	flw	FBgn0000711
B241R43	X	11251293	ATG	'A'	GTGCATGTG	INS	GTGCATGTG	0.176	strelka	downstream_gene_variant	MODIFIER	CG15198	intron	CG44422	FBgn0265595
B241R43	X	12080330	TGATGCAACAGACTAAACGTTGAAAATC	'T'	TAAATGATG	INS	TAAATGATG	0.118	mutect2	intron_variant	MODIFIER	CR43960	intron	Ten-a	FBgn0267001
B241R43	X	12670229	T	'TCG'	GAGCTCGCT	INS	GAGCTCGCT	0.125	mutect2	intron_variant	MODIFIER	Tis11	intron	Tis11	FBgn0011837
B241R43	X	13076498	GT	'G'	GTGAGTGGT	INS	GTGAGTGGT	0.25	mutect2	3_prime_UTR_variant	MODIFIER	rad	3UTR	rad	FBgn0265597
B241R43	X	13523537	C	'CAGCAGG'	GCAGCAGGA	INS	GCAGCAGGA	0.167	mutect2	3_prime_UTR_variant	MODIFIER	Neto	3UTR	Neto	FBgn0265416
B241R43	X	14448447	TA	'T'	ATCTTAAAA	INS	ATCTTAAAA	0.765	strelka	intron_variant	MODIFIER	dpr8	intron	dpr8	FBgn0052600
B241R43	X	15084116	A	'AGT'	GGGGAGTGT	INS	ACACTCCCC	0.222	mutect2	3_prime_UTR_variant	MODIFIER	CG9065	3UTR	CG9065	FBgn0030610
B241R43	X	15331011	G	'GA'	AGAAGAAAA	INS	TTTTCTTCT	0.286	strelka	3_prime_UTR_variant	MODIFIER	CG9114	3UTR	CG9114	FBgn0030628
B241R43	X	15492320	GT	'G'	CGTTGTTGT	INS	CGTTGTTGT	0.167	strelka	intron_variant	MODIFIER	Gmap	intron	Gmap	FBgn0027287
B241R43	X	16549205	GCA	'G'	GTCCGCACA	INS	GTCCGCACA	0.2	strelka	3_prime_UTR_variant	MODIFIER	Arp2	3UTR	Arp2	FBgn0011742
B241R43	X	17125328	A	'ACG'	TCGCACGCG	INS	CGCGTGCGA	0.2	mutect2,strelka	upstream_gene_variant	MODIFIER	CG5004	intron	CG5004	FBgn0260748
B241R43	X	17167103	ATG	'A'	TATAATGTC	INS	TATAATGTC	0.167	mutect2	intron_variant	MODIFIER	baz	intron	baz	FBgn0000163
B241R43	X	17297889	G	'GA'	GCAGGAAAA	INS	TTTTCCTGC	0.182	strelka	upstream_gene_variant	MODIFIER	CG5445	intron	Fim	FBgn0024238
B241R43	X	18814602	GAC	'G'	ACCCGACAC	INS	ACCCGACAC	0.286	strelka	downstream_gene_variant	MODIFIER	CG7058	intron	CG42450	FBgn0259927
B241R43	X	19019839	C	'CTG'	GCTCCTTTT	INS	GCTCCTTTT	0.333	strelka	intron_variant	MODIFIER	CG43759	intron	CG43759	FBgn0264090
B241R43	X	19375332	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.15	strelka	intron_variant	MODIFIER	kek5	intron	kek5	FBgn0031016
B241R43	X	19744990	ACAT	'A'	CTGCACATC	INS	CTGCACATC	0.105	mutect2	disruptive_inframe_deletion	MODERATE	Rpp20	5UTR	CG33932	FBgn0066303
B241R43	X	19787190	C	'CA'	ATTTCAATG	INS	ATTTCAATG	0.15	strelka	upstream_gene_variant	MODIFIER	vfl	ncRNA	CR44885	FBgn0266179
B241R43	X	20354134	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.176	strelka	intergenic_region	MODIFIER	CG1504-CR46072	intergenic	intergenic	intergenic
B241R43	X	20460431	AT	'A'	ATTTATTTC	INS	ATTTATTTC	0.188	strelka	intron_variant	MODIFIER	CG32506	intron	CG32506	FBgn0052506
B241R43	X	21413983	CGT	'C'	TGTACGTGT	INS	TGTACGTGT	0.176	strelka	upstream_gene_variant	MODIFIER	CR45003	intergenic	intergenic	intergenic
B241R43	Y	594356	CGCG	'C'	TGAGCGCGG	INS	TGAGCGCGG	0.24	strelka	intron_variant	MODIFIER	kl-2	intron	kl-2	FBgn0001313
B241R45	2L	939978	GCA	'G'	TCAAGCACA	INS	TCAAGCACA	0.116	strelka	intron_variant	MODIFIER	CG4341	intron	CG4341	FBgn0028481
B241R45	2L	3415516	CA	'C'	CAAACAAAA	INS	CAAACAAAA	0.4	strelka	upstream_gene_variant	MODIFIER	CG31952	intron	pgant2	FBgn0031530
B241R45	2L	8762986	G	'GCATGCAGTACTTTGAAAGGTCTT'	CATTGTAAT	INS	ATTACAATG	0.231	strelka	downstream_gene_variant	MODIFIER	CG9463	intergenic	intergenic	intergenic
B241R45	2L	13510080	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.0952	strelka	intron_variant	MODIFIER	B4	intron	B4	FBgn0023407
B241R45	2L	13640689	GT	'G'	CAATGTTTT	INS	CAATGTTTT	0.273	strelka	upstream_gene_variant	MODIFIER	CR44726	intron	ics	FBgn0028546
B241R45	2L	15952558	C	'CT'	CGCCCTTTT	INS	CGCCCTTTT	0.108	strelka	intron_variant	MODIFIER	beat-Ib	intron	beat-Ib	FBgn0028645
B241R45	2R	5103022	AT	'A'	AAATATGCA	INS	AAATATGCA	0.319	strelka	intergenic_region	MODIFIER	CG3107-gus	intergenic	intergenic	intergenic
B241R45	2R	12963300	G	'GATTGAGTTCCAAAAGTCAAGTTGTATA'	AGTTGTTGT	INS	ACAACAACT	0.211	strelka	downstream_gene_variant	MODIFIER	Psc	intergenic	intergenic	intergenic
B241R45	2R	13937399	GA	'G'	ACGGGATTT	INS	ACGGGATTT	0.103	strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
B241R45	2R	13937402	T	'TGGGATGGGA'	GGATTTGGG	INS	GGATTTGGG	0.0938	strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
B241R45	2R	15743869	C	'CAGCAAG'	GCGGCAGCA	INS	GCGGCAGCA	0.161	strelka	intron_variant	MODIFIER	CG30089	intron	CG30089	FBgn0050089
B241R45	2R	17294557	TTGG	'T'	TCATTTGGT	INS	TCATTTGGT	0.0851	strelka	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
B241R45	2R	18145618	TA	'T'	TAATTAAAA	INS	TAATTAAAA	0.308	strelka	3_prime_UTR_variant	MODIFIER	pAbp	exon_5	pAbp	FBgn0265297
B241R45	2R	18916132	G	'GGGGGA'	GGGGGCTTG	INS	CAAGCCCCC	0.28	strelka	upstream_gene_variant	MODIFIER	Vha100-3	intron	sano	FBgn0034408
B241R45	2R	21422151	TGAA	'T'	AAGCTGAAG	INS	AAGCTGAAG	0.0702	strelka	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
B241R45	2R	24514991	C	'CAT'	CATACACAC	INS	CATACACAC	0.0714	mutect2	5_prime_UTR_variant	MODIFIER	Letm1	5UTR	Letm1	FBgn0019886
B241R45	3L	3956111	GT	'G'	ATACGTTTT	INS	ATACGTTTT	0.211	strelka	3_prime_UTR_variant	MODIFIER	CG12605	3UTR	CG12605	FBgn0035481
B241R45	3L	5335535	TAC	'T'	CAGCTACAC	INS	CAGCTACAC	0.082	strelka	downstream_gene_variant	MODIFIER	CR45742	intergenic	intergenic	intergenic
B241R45	3L	5695332	TGA	'T'	TACATGAAC	INS	TACATGAAC	0.444	strelka	intron_variant	MODIFIER	sif	intron	sif	FBgn0085447
B241R45	3L	7826757	C	'CGTTGCTGCTGCTGCTGCTGCTACT'	AGCACGTTG	INS	AGCACGTTG	0.125	strelka	5_prime_UTR_variant	MODIFIER	Pdp1	5UTR	Pdp1	FBgn0016694
B241R45	3L	8398827	CA	'C'	TTTGCAAAA	INS	TTTGCAAAA	0.227	strelka	downstream_gene_variant	MODIFIER	mkg-p	intron	CG7120	FBgn0035888
B241R45	3L	9763909	AGT	'A'	CGCGAGTGT	INS	CGCGAGTGT	0.147	strelka	5_prime_UTR_variant	MODIFIER	CG8177	exon_1	CG8177	FBgn0036043
B241R45	3L	12296745	CGT	'C'	TTACCGTGT	INS	TTACCGTGT	0.129	strelka	upstream_gene_variant	MODIFIER	CG4328	intergenic	intergenic	intergenic
B241R45	3L	12691938	A	'AGGGGCAG'	TGGCAGATG	INS	CATCTGCCA	0.0968	strelka	upstream_gene_variant	MODIFIER	mirr	intergenic	intergenic	intergenic
B241R45	3L	12691940	AT	'A'	GCAGATGCA	INS	GCAGATGCA	0.103	strelka	upstream_gene_variant	MODIFIER	mirr	intergenic	intergenic	intergenic
B241R45	3L	13506273	ACAG	'A'	AACAACAGC	INS	AACAACAGC	0.069	strelka	disruptive_inframe_deletion	MODERATE	Spt20	exon_3	Spt20	FBgn0036374
B241R45	3L	13672825	C	'CA'	CCTTCAAAG	INS	CCTTCAAAG	0.167	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
B241R45	3L	14024818	G	'GC'	TGTTGTTGT	INS	ACAACAACA	0	consensus	frameshift_variant	HIGH	ptip	exon_4	Ptip	FBgn0052133
B241R45	3L	17415234	GA	'G'	CCTCGAAAA	INS	CCTCGAAAA	0.138	strelka	5_prime_UTR_variant	MODIFIER	blot	exon_1	blot	FBgn0027660
B241R45	3L	19598353	CA	'C'	CGTCCAAAA	INS	CGTCCAAAA	0.182	strelka	upstream_gene_variant	MODIFIER	Taf6	intron	ash1	FBgn0005386
B241R45	3R	8485020	G	'GA'	GATTGAAAA	INS	TTTTCAATC	0.106	strelka	intergenic_region	MODIFIER	CG45263-Or85b	intergenic	intergenic	intergenic
B241R45	3R	8566264	GA	'G'	GAAGGAAAA	INS	GAAGGAAAA	0.122	strelka	upstream_gene_variant	MODIFIER	pch2	intron	Cenp-C	FBgn0266916
B241R45	3R	11016817	G	'GT'	GATCGTTTT	INS	AAAACGATC	0.111	strelka	intron_variant	MODIFIER	CG34114	intron	CG34114	FBgn0083950
B241R45	3R	14430790	A	'AT'	CTCCATTTT	INS	AAAATGGAG	0.106	strelka	intron_variant	MODIFIER	cv-c	intron	cv-c	FBgn0086901
B241R45	3R	14513890	CT	'C'	GAATCTTTT	INS	GAATCTTTT	0.208	strelka	upstream_gene_variant	MODIFIER	HtrA2	intergenic	intergenic	intergenic
B241R45	3R	16508696	GA	'G'	AGTCGAAAA	INS	AGTCGAAAA	0.0755	strelka	intron_variant	MODIFIER	CG42342	intron	CG42342	FBgn0259244
B241R45	3R	18248587	G	'GA'	AACAGAAAA	INS	TTTTCTGTT	0.135	strelka	3_prime_UTR_variant	MODIFIER	14-3-3epsilon	3UTR	14-3-3epsilon	FBgn0020238
B241R45	3R	18521766	T	'TC'	GACTTCCCC	INS	GACTTCCCC	0.2	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
B241R45	3R	19054962	GT	'G'	GCTCGTTTT	INS	GCTCGTTTT	0.0909	strelka	upstream_gene_variant	MODIFIER	CR46041	intron	cdi	FBgn0004876
B241R45	3R	19336828	TACTTTACTTTACTTTGGATAGCATGGA	'T'	ACTTTACTT	INS	ACTTTACTT	0.256	mutect2,strelka	intergenic_region	MODIFIER	CR43258-CG43203	intergenic	intergenic	intergenic
B241R45	3R	19548112	C	'CA'	TATGCAAAA	INS	TATGCAAAA	0.147	strelka	intron_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
B241R45	3R	19978782	G	'GACACAACGAGA'	GAGAGGGAC	INS	GTCCCTCTC	0	consensus	frameshift_variant	HIGH	CG31213	exon	CG31213	FBgn0051213
B241R45	3R	19978784	G	'GC'	GAGGGACAA	INS	TTGTCCCTC	0	consensus	frameshift_variant	HIGH	CG31213	exon	CG31213	FBgn0051213
B241R45	3R	21210490	C	'CA'	AACCCAAAA	INS	AACCCAAAA	0.0816	mutect2	5_prime_UTR_variant	MODIFIER	SNF4Agamma	5UTR	SNF4Agamma	FBgn0264357
B241R45	3R	21317912	GTA	'G'	AACAGTAAA	INS	AACAGTAAA	0.15	strelka	downstream_gene_variant	MODIFIER	Hsromega	intergenic	intergenic	intergenic
B241R45	3R	21779951	A	'ATAAATGGTATCCAATATATACATCTTGG'	AACAATAAT	INS	ATTATTGTT	0.0938	strelka	upstream_gene_variant	MODIFIER	GABA-B-R2	intron	tsl	FBgn0003867
B241R45	3R	21811613	G	'GGTGGGC'	CAACGGTTT	INS	AAACCGTTG	0.222	strelka	upstream_gene_variant	MODIFIER	CASK	intron	CASK	FBgn0013759
B241R45	3R	22645670	GTTT	'G'	ATCAGTTTT	INS	ATCAGTTTT	0.143	strelka	intron_variant	MODIFIER	wake	intron	wake	FBgn0266418
B241R45	3R	29275404	CGAG	'C'	TAACCGAGG	INS	TAACCGAGG	0.1	strelka	downstream_gene_variant	MODIFIER	CR45568	intergenic	intergenic	intergenic
B241R45	3R	29692168	C	'CCACCAA'	ACCACCACC	INS	ACCACCACC	0.0833	mutect2	upstream_gene_variant	MODIFIER	dmrt99B	intergenic	intergenic	intergenic
B241R45	3R	29876958	GAC	'G'	CGCAGACAC	INS	CGCAGACAC	0.156	strelka	upstream_gene_variant	MODIFIER	CG31038	intergenic	intergenic	intergenic
B241R45	X	2201871	TA	'T'	AGATTAAAA	INS	AGATTAAAA	0.235	strelka	3_prime_UTR_variant	MODIFIER	CG18031	3UTR	CG18031	FBgn0023550
B241R45	X	2305052	T	'TAAC'	ACAATAATA	INS	ACAATAATA	0.241	strelka	intron_variant	MODIFIER	phl	intron	Raf	FBgn0003079
B241R45	X	2854235	T	'TGA'	CAGCTGAGA	INS	CAGCTGAGA	0.15	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
B241R45	X	5442045	TTG	'T'	GCGTTTGTG	INS	GCGTTTGTG	0.174	strelka	upstream_gene_variant	MODIFIER	SPR	intergenic	intergenic	intergenic
B241R45	X	7467816	GGT	'G'	CTTGGGTGT	INS	CTTGGGTGT	0.148	strelka	intergenic_region	MODIFIER	CR44500-CR45534	intergenic	intergenic	intergenic
B241R45	X	7638634	TTCG	'T'	TTGGTTCGT	INS	TTGGTTCGT	0.125	strelka	intron_variant	MODIFIER	ct	intron	ct	FBgn0004198
B241R45	X	8337990	AAC	'A'	GACAAACAC	INS	GACAAACAC	0.214	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
B241R45	X	9512475	C	'CA'	AAACCCAAA	INS	AAACCCAAA	0.167	strelka	downstream_gene_variant	MODIFIER	CG34028	intron	CG32700	FBgn0267253
B241R45	X	9821569	CGT	'C'	TTTCCGTGT	INS	TTTCCGTGT	0.125	strelka	intron_variant	MODIFIER	CG32698	intron	CG32698	FBgn0052698
B241R45	X	10059919	CGA	'C'	GGAGCGAGA	INS	GGAGCGAGA	0.182	strelka	upstream_gene_variant	MODIFIER	CR45601	intron	CG15312	FBgn0030174
B241R45	X	10170845	CCT	'C'	CCGGCCTCT	INS	CCGGCCTCT	0.222	strelka	intron_variant	MODIFIER	CR44894	intron	CG43902	FBgn0264503
B241R45	X	11220523	ATG	'A'	TACTATGTG	INS	TACTATGTG	0.167	strelka	3_prime_UTR_variant	MODIFIER	CG44422	3UTR	CG44422	FBgn0265595
B241R45	X	12212484	T	'TATATA'	TCTTTTTTT	INS	TCTTTTTTT	0.588	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
B241R45	X	12719638	ATGTG	'A'	TACTATGTG	INS	TACTATGTG	0.111	mutect2	upstream_gene_variant	MODIFIER	CR43963	ncRNA	CR43963	FBgn0264678
B241R45	X	14664739	TG	'T'	GCATTGAAA	INS	GCATTGAAA	0.158	mutect2	intergenic_region	MODIFIER	NetA-CG5321	intergenic	intergenic	intergenic
B241R45	X	16813131	CT	'C'	TGCACTTTT	INS	TGCACTTTT	0.182	strelka	upstream_gene_variant	MODIFIER	CR44053	intron	CG4829	FBgn0030796
B241R45	X	16913434	GACA	'G'	ACAAGACAA	INS	ACAAGACAA	0.2	strelka	5_prime_UTR_variant	MODIFIER	CG4928	exon_1	CG4928	FBgn0027556
B241R45	X	17402917	TTG	'T'	CCGCTTGTG	INS	CCGCTTGTG	0.273	strelka	3_prime_UTR_variant	MODIFIER	B-H1	3UTR	B-H1	FBgn0011758
B241R45	X	18371498	TAC	'T'	CGCGTACAC	INS	CGCGTACAC	0.114	strelka	5_prime_UTR_variant	MODIFIER	CrebB	exon_1	CrebB	FBgn0265784
B241R45	X	20452571	TGC	'T'	TGTGTGCGA	INS	TGTGTGCGA	0.167	strelka	intron_variant	MODIFIER	CG32506	intron	CG32506	FBgn0052506
B241R49	2L	1510184	ATCC	'A'	CGTGATCCT	INS	CGTGATCCT	0.115	strelka	intergenic_region	MODIFIER	CR44064-CG18132	intergenic	intergenic	intergenic
B241R49	2L	2554247	TA	'T'	GGAATAAAA	INS	GGAATAAAA	0.222	strelka	upstream_gene_variant	MODIFIER	CG3515	intergenic	intergenic	intergenic
B241R49	2L	2621772	GA	'G'	CATTGAAAA	INS	CATTGAAAA	0.12	strelka	downstream_gene_variant	MODIFIER	CG43403	intergenic	intergenic	intergenic
B241R49	2L	3110134	CAT	'C'	AAAGCATAT	INS	AAAGCATAT	0.0784	mutect2,strelka	frameshift_variant	HIGH	PpD6	exon	PpD6	FBgn0005779
B241R49	2L	4495405	CA	'C'	GGTACAGGG	INS	GGTACAGGG	0.0702	strelka	frameshift_variant	HIGH	dp	exon_70	dpy	FBgn0053196
B241R49	2L	5494403	TC	'T'	CTTTTCCGT	INS	CTTTTCCGT	0.105	mutect2	intergenic_region	MODIFIER	CR45287-CG14020	intergenic	intergenic	intergenic
B241R49	2L	7866090	TTGC	'T'	GGTGTTGCT	INS	GGTGTTGCT	0.235	strelka	disruptive_inframe_deletion	MODERATE	Proc	exon	Proc	FBgn0045038
B241R49	2L	7926451	GT	'G'	ATTTGTTTT	INS	ATTTGTTTT	0.25	strelka	intron_variant	MODIFIER	Snoo	intron	Snoo	FBgn0085450
B241R49	2L	8804419	GGT	'G'	AGGCGGTGT	INS	AGGCGGTGT	0.25	strelka	intergenic_region	MODIFIER	CG42710-SoxN	intergenic	intergenic	intergenic
B241R49	2L	9852439	AAC	'A'	GGCTAACAC	INS	GGCTAACAC	0.364	strelka	downstream_gene_variant	MODIFIER	CR43766	intron	nAChRalpha6	FBgn0032151
B241R49	2L	10517389	GT	'G'	GCGGGTTTT	INS	GCGGGTTTT	0.312	strelka	5_prime_UTR_variant	MODIFIER	Lrr47	5UTR	Lrr47	FBgn0010398
B241R49	2L	11585257	ATTCCGTATAGGGAGAATTAAAAC	'A'	AATAATTCC	INS	AATAATTCC	0.231	strelka	upstream_gene_variant	MODIFIER	CR44496	intron	kek2	FBgn0015400
B241R49	2L	12962243	CCA	'C'	ACGCCCACA	INS	ACGCCCACA	0.154	strelka	upstream_gene_variant	MODIFIER	CG16800	intergenic	intergenic	intergenic
B241R49	2L	14292089	TTA	'T'	GCTCTTACA	INS	GCTCTTACA	0.087	mutect2	downstream_gene_variant	MODIFIER	CR43639	intron	wb	FBgn0261563
B241R49	2L	14663651	AG	'A'	AAAAAGAAA	INS	AAAAAGAAA	0.154	strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
B241R49	2L	14939927	GTC	'G'	CGCTGTCTC	INS	CGCTGTCTC	0.214	strelka	intron_variant	MODIFIER	CG42313	intron	CG42313	FBgn0259213
B241R49	2L	18149342	G	'GT'	TCCAGTTTT	INS	AAAACTGGA	0.136	strelka	upstream_gene_variant	MODIFIER	CG17681	intron	Socs36E	FBgn0041184
B241R49	2L	18166302	GCA	'G'	GAAAGCACA	INS	GAAAGCACA	0.107	strelka	intron_variant	MODIFIER	CG42750	intron	CG42750	FBgn0261804
B241R49	2L	18475942	TTGC	'T'	GATGTTGCT	INS	GATGTTGCT	0.143	strelka	disruptive_inframe_deletion	MODERATE	CG10283	exon_5	CG10283	FBgn0032681
B241R49	2L	18921831	CCA	'C'	TGTCCCACA	INS	TGTCCCACA	0.114	strelka	intron_variant	MODIFIER	ssp3	intron	ssp3	FBgn0032723
B241R49	2L	22747382	CA	'C'	GTTTCAAAA	INS	GTTTCAAAA	0.238	strelka	downstream_gene_variant	MODIFIER	CR43927	intron	CG40006	FBgn0058006
B241R49	2R	1412103	CA	'C'	TAAGCAAAA	INS	TAAGCAAAA	0.212	strelka	intron_variant	MODIFIER	l(2)41Ab	intron	l(2)41Ab	FBgn0262123
B241R49	2R	4150799	CA	'C'	ATGACAAAA	INS	ATGACAAAA	0.25	strelka	intergenic_region	MODIFIER	CG17683-CG40127	intergenic	intergenic	intergenic
B241R49	2R	8441129	TAA	'T'	TGTGTAAAG	INS	TGTGTAAAG	0.286	strelka	upstream_gene_variant	MODIFIER	Cyp4e2	intron	Cyp4ad1	FBgn0033292
B241R49	2R	9542647	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.13	strelka	3_prime_UTR_variant	MODIFIER	CG1888	3UTR	CG1888	FBgn0033421
B241R49	2R	10600995	TTTGG	'T'	TAATTTTGG	INS	TAATTTTGG	0.3	strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
B241R49	2R	11378576	C	'CGATGGGGTTTAGTACCAGTCTATG'	TTTCCGTGA	INS	TTTCCGTGA	0.188	strelka	downstream_gene_variant	MODIFIER	CG13203	intron	Tsp47F	FBgn0033629
B241R49	2R	13347928	ATG	'A'	CGACATGTG	INS	CGACATGTG	0.15	strelka	upstream_gene_variant	MODIFIER	CR44206	intergenic	intergenic	intergenic
B241R49	2R	13654900	GT	'G'	TCCAGTTTT	INS	TCCAGTTTT	0.267	strelka	intron_variant	MODIFIER	fas	intron	fas	FBgn0000633
B241R49	2R	17322282	CGT	'C'	AGTGCGTGT	INS	AGTGCGTGT	0.176	strelka	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
B241R49	2R	18283464	TTGC	'T'	CTGGTTGCT	INS	CTGGTTGCT	0.1	strelka	disruptive_inframe_deletion	MODERATE	sbb	exon_8	sbb	FBgn0010575
B241R49	2R	21604109	TA	'T'	AAGCTAAAA	INS	AAGCTAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CR43243	intergenic	intergenic	intergenic
B241R49	2R	22546847	TCA	'T'	GAGCTCACA	INS	GAGCTCACA	0.143	strelka	upstream_gene_variant	MODIFIER	CG6018	intron	px	FBgn0003175
B241R49	2R	23765788	ATG	'A'	CTAAATGTG	INS	CTAAATGTG	0.182	strelka	intron_variant	MODIFIER	CG9850	intron	CG9850	FBgn0034903
B241R49	3L	366484	AT	'A'	TTTAATTTT	INS	TTTAATTTT	0.286	strelka	upstream_gene_variant	MODIFIER	CG13884	intergenic	intergenic	intergenic
B241R49	3L	1588319	T	'TTGGAGTTAA'	TTGATTGGC	INS	TTGATTGGC	0.158	strelka	intron_variant	MODIFIER	CG13917	intron	CG13917	FBgn0035237
B241R49	3L	2128468	GTGT	'G'	GGTGGTGTT	INS	GGTGGTGTT	0	consensus	disruptive_inframe_deletion	MODERATE	zormin	exon_16	zormin	FBgn0052311
B241R49	3L	2665083	G	'GT'	TTTGGTTTT	INS	AAAACCAAA	0.148	strelka	3_prime_UTR_variant	MODIFIER	Fife	exon_15	Fife	FBgn0264606
B241R49	3L	2823642	ATG	'A'	CAGCATGTG	INS	CAGCATGTG	0.15	strelka	upstream_gene_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
B241R49	3L	3870999	GTCTA	'G'	GTCTGTCTA	INS	GTCTGTCTA	0.0833	mutect2	intergenic_region	MODIFIER	CR45379-CR43917	intergenic	intergenic	intergenic
B241R49	3L	3912195	TG	'T'	TGTATGTTT	INS	TGTATGTTT	0.15	strelka	upstream_gene_variant	MODIFIER	mge	intron	Eip63F-1	FBgn0004910
B241R49	3L	4224685	A	'ATTTTT'	TCATATTTT	INS	AAAATATGA	0	consensus	3_prime_UTR_variant	MODIFIER	ImpL2	3UTR	ImpL2	FBgn0001257
B241R49	3L	4842601	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.214	strelka	upstream_gene_variant	MODIFIER	CG13707	intergenic	intergenic	intergenic
B241R49	3L	6311092	GC	'G'	CGATGCCCC	INS	CGATGCCCC	0.2	strelka	downstream_gene_variant	MODIFIER	CR45113	intergenic	intergenic	intergenic
B241R49	3L	6951788	T	'TC'	AATTTAAAT	INS	AATTTAAAT	0.167	strelka	upstream_gene_variant	MODIFIER	CG9948	intron	CG10077	FBgn0035720
B241R49	3L	8460721	T	'TTTC'	TTCTTGTTT	INS	TTCTTGTTT	0.211	strelka	intron_variant	MODIFIER	Gug	intron	Gug	FBgn0010825
B241R49	3L	8619308	AT	'A'	CCATATTTT	INS	CCATATTTT	0.12	strelka	3_prime_UTR_variant	MODIFIER	S-Lap1	3UTR	S-Lap1	FBgn0035915
B241R49	3L	10078527	AT	'A'	AACCATAAG	INS	AACCATAAG	0.111	strelka	downstream_gene_variant	MODIFIER	dpr6	intron	dpr6	FBgn0040823
B241R49	3L	10176555	GCA	'G'	AGTTGCACA	INS	AGTTGCACA	0.136	strelka	intron_variant	MODIFIER	dpr10	intron	dpr10	FBgn0052057
B241R49	3L	10450474	TC	'T'	TTTTTCGTC	INS	TTTTTCGTC	0.25	strelka	intergenic_region	MODIFIER	Ir67c-Gem3	intergenic	intergenic	intergenic
B241R49	3L	10726438	GAC	'G'	CACGGACAC	INS	CACGGACAC	0.238	strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
B241R49	3L	10808665	TG	'T'	GGGATGTAA	INS	GGGATGTAA	0.125	strelka	upstream_gene_variant	MODIFIER	CR44347	intergenic	intergenic	intergenic
B241R49	3L	11078124	CGAT	'C'	ACGACGATG	INS	ACGACGATG	0.093	strelka	disruptive_inframe_deletion	MODERATE	CG7839	exon_4	CG7839	FBgn0036124
B241R49	3L	13103835	A	'AGGGCTACATGGTCGAAAGAAAT'	AATGATTTC	INS	GAAATCATT	0.286	strelka	upstream_gene_variant	MODIFIER	CR44554	intergenic	intergenic	intergenic
B241R49	3L	13802250	GAC	'G'	CTCAGACAC	INS	CTCAGACAC	0.154	strelka	upstream_gene_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
B241R49	3L	16489659	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.143	strelka	downstream_gene_variant	MODIFIER	CG42514	intron	CG33158	FBgn0053158
B241R49	3L	17294778	A	'ATGCAACAC'	CTTTATTTT	INS	AAAATAAAG	0.385	strelka	intergenic_region	MODIFIER	CR45436-mir-219	intergenic	intergenic	intergenic
B241R49	3L	17294790	CTCAGCTTCGGCCG	'C'	CGAGCTCAG	INS	CGAGCTCAG	0.417	strelka	intergenic_region	MODIFIER	CR45436-mir-219	intergenic	intergenic	intergenic
B241R49	3L	19642494	CGCA	'C'	CCGCCGCAG	INS	CCGCCGCAG	0.13	strelka	disruptive_inframe_deletion	MODERATE	CG8786	exon_1	CG8786	FBgn0036897
B241R49	3L	21044101	C	'CA'	ATCCCTACG	INS	ATCCCTACG	0.345	strelka	upstream_gene_variant	MODIFIER	siz	intron	siz	FBgn0026179
B241R49	3L	21044103	ACG	'A'	CCCTACGAT	INS	CCCTACGAT	0.345	strelka	upstream_gene_variant	MODIFIER	siz	intron	siz	FBgn0026179
B241R49	3L	25069029	C	'CA'	AAACCAAAA	INS	AAACCAAAA	0.158	strelka	intergenic_region	MODIFIER	CG40002-Set1	intergenic	intergenic	intergenic
B241R49	3R	2381027	TA	'T'	ACATTAAAA	INS	ACATTAAAA	0.273	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
B241R49	3R	2971032	A	'AG'	ATCGAGGGA	INS	TCCCTCGAT	0.222	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
B241R49	3R	8478075	CA	'C'	TATTCAAAA	INS	TATTCAAAA	0.19	strelka	upstream_gene_variant	MODIFIER	CG45263	intergenic	intergenic	intergenic
B241R49	3R	10886848	GT	'G'	ATAGGTTTT	INS	ATAGGTTTT	0.235	strelka	upstream_gene_variant	MODIFIER	Tpc1	intron	Leash	FBgn0037856
B241R49	3R	12293393	A	'AAAAAAC'	CAAAAAAAA	INS	TTTTTTTTG	0.308	strelka	intron_variant	MODIFIER	svp	intron	svp	FBgn0003651
B241R49	3R	14100727	TAG	'T'	CACATAGAG	INS	CACATAGAG	0.227	strelka	upstream_gene_variant	MODIFIER	CCHa1	intron	PK1-R	FBgn0038201
B241R49	3R	16682420	T	'TC'	TTTTTCCTT	INS	TTTTTCCTT	0.167	strelka	intron_variant	MODIFIER	Ubx	intron	Ubx	FBgn0003944
B241R49	3R	19329190	GT	'G'	TAGCGTTTT	INS	TAGCGTTTT	0.241	strelka	upstream_gene_variant	MODIFIER	Dl	intergenic	intergenic	intergenic
B241R49	3R	19517094	GAAA	'G'	GAACGAAAG	INS	GAACGAAAG	0.0385	mutect2	intron_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
B241R49	3R	19930873	G	'GTGGCATTTCCTCTTCGCTTTCCT'	TGTGGTGGC	INS	GCCACCACA	0.231	strelka	upstream_gene_variant	MODIFIER	CG4459	intron	Hs6st	FBgn0038755
B241R49	3R	22874181	GTTGT	'G'	ATTTGTTGT	INS	ATTTGTTGT	0.1	strelka	intergenic_region	MODIFIER	CR43846-klg	intergenic	intergenic	intergenic
B241R49	3R	23896618	GCA	'G'	AAAGGCACA	INS	AAAGGCACA	0.143	strelka	3_prime_UTR_variant	MODIFIER	sba	exon_8	sba	FBgn0016754
B241R49	3R	27385574	ATT	'A'	TGATATTTT	INS	TGATATTTT	0.25	strelka	intron_variant	MODIFIER	side	intron	side	FBgn0016061
B241R49	3R	29444369	TCC	'T'	GTCCTCCCC	INS	GTCCTCCCC	0.3	strelka	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
B241R49	3R	30449986	AT	'A'	AATAATTAG	INS	AATAATTAG	0.0909	mutect2	upstream_gene_variant	MODIFIER	Osi23	intron	aralar1	FBgn0028646
B241R49	3R	30548686	GACC	'G'	AGGAGACCA	INS	AGGAGACCA	0.167	strelka	disruptive_inframe_deletion	MODERATE	tmod	exon_2	tmod	FBgn0082582
B241R49	3R	31684426	CA	'C'	CCCACAAAA	INS	CCCACAAAA	0.179	strelka	upstream_gene_variant	MODIFIER	CG11550	intergenic	intergenic	intergenic
B241R49	X	441788	ATGCCAGTGAGT	'A'	TTACATGCC	INS	TTACATGCC	0.111	mutect2	upstream_gene_variant	MODIFIER	pcl	intron	CG32816	FBgn0052816
B241R49	X	2095246	CAGTGAATCGTCCTCCCTTTGCAGGTGAAA	'C'	ACCACAGTG	INS	ACCACAGTG	0.143	mutect2	splice_acceptor_variant&disruptive_inframe_deletion&splice_region_variant&intron_variant	HIGH	csw	intron	csw	FBgn0000382
B241R49	X	2370904	CGA	'C'	TGGCCGAGG	INS	TGGCCGAGG	0.143	mutect2	frameshift_variant	HIGH	PsGEF	exon_14	PsGEF	FBgn0264598
B241R49	X	4506504	TA	'T'	GTGATAAAA	INS	GTGATAAAA	0.25	strelka	intron_variant	MODIFIER	CR32773	ncRNA	CR32773	FBgn0052773
B241R49	X	5666281	CTG	'C'	GTGCCTGTG	INS	GTGCCTGTG	0.176	strelka	5_prime_UTR_variant	MODIFIER	CG4119	exon_1	CG4119	FBgn0028474
B241R49	X	5974080	A	'AAC'	GCGAAACAT	INS	ATGTTTCGC	0.154	mutect2	intron_variant	MODIFIER	Grip	intron	Grip	FBgn0029830
B241R49	X	7296127	T	'TC'	GATATCCAC	INS	GATATCCAC	0.133	mutect2,strelka	upstream_gene_variant	MODIFIER	unc-119	intron	CG1677	FBgn0029941
B241R49	X	7868473	TGTG	'T'	AGGGTGTGG	INS	AGGGTGTGG	0.143	strelka	disruptive_inframe_deletion	MODERATE	dec-1	exon	dec-1	FBgn0000427
B241R49	X	9074262	CAAT	'C'	TGGGCAATC	INS	TGGGCAATC	0.105	mutect2	upstream_gene_variant	MODIFIER	CG10970	intron	CG44325	FBgn0265413
B241R49	X	9281199	G	'GCCT'	GAGCGCCTC	INS	GAGGCGCTC	0.143	mutect2	conservative_inframe_insertion	MODERATE	c11.1	exon_3	c11.1	FBgn0040236
B241R49	X	9715229	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.273	strelka	intergenic_region	MODIFIER	btd-CR43498	intergenic	intergenic	intergenic
B241R49	X	9849235	A	'AT'	GTGCATTTT	INS	AAAATGCAC	0.286	strelka	3_prime_UTR_variant	MODIFIER	CG32698	3UTR	CG32698	FBgn0052698
B241R49	X	10059919	C	'CGA'	GGAGCGAGA	INS	GGAGCGAGA	0.167	strelka	upstream_gene_variant	MODIFIER	CR45601	intron	CG15312	FBgn0030174
B241R49	X	10150073	CTG	'C'	GTCTCTGTG	INS	GTCTCTGTG	0.176	strelka	upstream_gene_variant	MODIFIER	CG12645	ncRNA	CR44894	FBgn0266199
B241R49	X	10681996	A	'AT'	TGTTATTTG	INS	CAAATAACA	0.158	strelka	intron_variant	MODIFIER	X11Lbeta	intron	X11Lbeta	FBgn0052677
B241R49	X	11039548	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.188	strelka	upstream_gene_variant	MODIFIER	CG42339	intron	CG42339	FBgn0259241
B241R49	X	21125618	AT	'A'	ATGTATGTA	INS	ATGTATGTA	0.25	strelka	intron_variant	MODIFIER	CG34120	intron	CG34120	FBgn0083956
B241R49	X	21356217	AGG	'A'	ATCCAGGGA	INS	ATCCAGGGA	0.118	mutect2	frameshift_variant	HIGH	sol	exon_6	sol	FBgn0003464
B241R49	Y	3623711	ACCG	'A'	GTGAACCGT	INS	GTGAACCGT	0.2	strelka	intergenic_region	MODIFIER	Ory-Ccy	intergenic	intergenic	intergenic
B241R51	2L	527987	GT	'G'	CTGCGTTTT	INS	CTGCGTTTT	0.125	strelka	intron_variant	MODIFIER	ush	intron	ush	FBgn0003963
B241R51	2L	594900	TCC	'T'	CCTCTCCCT	INS	CCTCTCCCT	0.0784	mutect2	upstream_gene_variant	MODIFIER	Gsc	intergenic	intergenic	intergenic
B241R51	2L	615306	G	'GTAAA'	AATGGTAAT	INS	ATTACCATT	0.233	strelka	downstream_gene_variant	MODIFIER	lectin-21Cb	intergenic	intergenic	intergenic
B241R51	2L	615317	TCTGG	'T'	AATGTCTGG	INS	AATGTCTGG	0.241	strelka	downstream_gene_variant	MODIFIER	lectin-21Cb	intergenic	intergenic	intergenic
B241R51	2L	1136667	C	'CG'	GCCCCCGCC	INS	GCCCCCGCC	0.25	strelka	upstream_gene_variant	MODIFIER	Iris	intron	CG4577	FBgn0031306
B241R51	2L	2126351	CT	'C'	TCCGCTTTT	INS	TCCGCTTTT	0.0676	mutect2,strelka	upstream_gene_variant	MODIFIER	GlyP	intergenic	intergenic	intergenic
B241R51	2L	2303551	GCAGCAAGGGCATTTACCAATTGTGCACTTT	'G'	AATCGCAGC	INS	AATCGCAGC	0.302	strelka	upstream_gene_variant	MODIFIER	CG16995	intergenic	intergenic	intergenic
B241R51	2L	6513593	GT	'G'	ATCTGTTTT	INS	ATCTGTTTT	0.0778	strelka	intron_variant	MODIFIER	CG31637	intron	CG31637	FBgn0051637
B241R51	2L	8762986	G	'GCATGCAGTACTTTGAAAGGTCTT'	CATTGTAAT	INS	ATTACAATG	0.2	strelka	downstream_gene_variant	MODIFIER	CG9463	intergenic	intergenic	intergenic
B241R51	2L	10933403	GAC	'G'	CACTGACAC	INS	CACTGACAC	0.102	strelka	upstream_gene_variant	MODIFIER	CG14072	intron	dpr2	FBgn0261871
B241R51	2L	16251907	GA	'G'	GAGCGAAAA	INS	GAGCGAAAA	0.0938	strelka	upstream_gene_variant	MODIFIER	PRL-1	intron	PRL-1	FBgn0024734
B241R51	2L	16582537	GT	'G'	TAGCGTTTT	INS	TAGCGTTTT	0.179	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
B241R51	2L	17087689	TA	'T'	AACCTAAAA	INS	AACCTAAAA	0.176	strelka	5_prime_UTR_variant	MODIFIER	CG12620	5UTR	CG12620	FBgn0032626
B241R51	2L	17293191	GT	'G'	CACCGTTTT	INS	CACCGTTTT	0.0851	strelka	upstream_gene_variant	MODIFIER	CG6380	intergenic	intergenic	intergenic
B241R51	2L	18395522	T	'TA'	GAGCTAAAA	INS	GAGCTAAAA	0.0759	strelka	upstream_gene_variant	MODIFIER	CR44486	intergenic	intergenic	intergenic
B241R51	2L	18604959	ACTAAAGACGTTTC	'A'	AAACACTAA	INS	AAACACTAA	0.0256	mutect2	5_prime_UTR_variant	MODIFIER	CG10413	5UTR	CG10413	FBgn0032689
B241R51	2L	18762414	GT	'G'	ATCTGTTTT	INS	ATCTGTTTT	0.122	strelka	downstream_gene_variant	MODIFIER	ham	intergenic	intergenic	intergenic
B241R51	2L	21962201	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.0746	strelka	upstream_gene_variant	MODIFIER	CR44804	intergenic	intergenic	intergenic
B241R51	2R	7479860	T	'TTTTC'	TGTATGTAT	INS	TGTATGTAT	0.114	strelka	3_prime_UTR_variant	MODIFIER	wech	3UTR	wech	FBgn0259745
B241R51	2R	9407430	TA	'T'	TAGATAGAT	INS	TAGATAGAT	0.121	strelka	intron_variant	MODIFIER	wun	intron	wun	FBgn0016078
B241R51	2R	9407432	G	'GCATCT'	GATAGATAG	INS	CTATCTATC	0.121	strelka	intron_variant	MODIFIER	wun	intron	wun	FBgn0016078
B241R51	2R	10088765	TTAGCAGAATGGTAACTTTTCTTACATAAGTTGCTA	'T'	TAGCTTAGC	INS	TAGCTTAGC	0.267	strelka	upstream_gene_variant	MODIFIER	sut4	intron	CG2269	FBgn0033484
B241R51	2R	10609034	G	'GAGCAATCATGCATCCTT'	AGCCGTCCT	INS	AGGACGGCT	0.222	strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
B241R51	2R	10914348	CA	'C'	CAACCAAAA	INS	CAACCAAAA	0.222	strelka	downstream_gene_variant	MODIFIER	Obp47a	intergenic	intergenic	intergenic
B241R51	2R	12045237	T	'TA'	TTTTTACAT	INS	TTTTTACAT	0.217	strelka	downstream_gene_variant	MODIFIER	RpIII128	intron	Drep1	FBgn0024732
B241R51	2R	18342316	CT	'C'	TGGGCTTTT	INS	TGGGCTTTT	0.121	strelka	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
B241R51	2R	18688581	G	'GA'	AATCGAAAA	INS	TTTTCGATT	0.125	strelka	3_prime_UTR_variant	MODIFIER	CG42855	intron	Sik3	FBgn0262103
B241R51	2R	19286694	GT	'G'	ATCCGTTTT	INS	ATCCGTTTT	0.175	strelka	upstream_gene_variant	MODIFIER	CG11906	intron	CG10474	FBgn0034427
B241R51	2R	19463738	CA	'C'	TCCACAAAA	INS	TCCACAAAA	0.0714	strelka	upstream_gene_variant	MODIFIER	par-1	intron	par-1	FBgn0260934
B241R51	2R	23436627	A	'ACACACC'	CCACACCCC	INS	GGGGTGTGG	0.172	strelka	upstream_gene_variant	MODIFIER	CG9815	intergenic	intergenic	intergenic
B241R51	2R	24228417	CCA	'C'	GGCCCCACA	INS	GGCCCCACA	0.0909	strelka	intron_variant	MODIFIER	CG30419	intron	CG30419	FBgn0050419
B241R51	3L	705296	TTAGCAACTTCATAACTTATAATG	'T'	TGACTTAGC	INS	TGACTTAGC	0.136	strelka	upstream_gene_variant	MODIFIER	CR44514	intergenic	intergenic	intergenic
B241R51	3L	1031366	TG	'T'	AATGTGGGA	INS	AATGTGGGA	0.1	strelka	upstream_gene_variant	MODIFIER	CG9205	intron	trio	FBgn0024277
B241R51	3L	3558275	G	'GA'	CTTTGAAAA	INS	TTTTCAAAG	0.3	strelka	upstream_gene_variant	MODIFIER	CR45820	intron	Eip63E	FBgn0005640
B241R51	3L	7981728	ACTGG	'A'	GCTGACTGG	INS	GCTGACTGG	0.16	strelka	upstream_gene_variant	MODIFIER	CG8038	intron	nmo	FBgn0011817
B241R51	3L	8438134	TA	'T'	CCAATAGTT	INS	CCAATAGTT	0.188	strelka	downstream_gene_variant	MODIFIER	CG6983	intron	Unr	FBgn0263352
B241R51	3L	8523538	CGCA	'C'	TGGTCGCAG	INS	TGGTCGCAG	0.25	strelka	upstream_gene_variant	MODIFIER	GstO2	intergenic	intergenic	intergenic
B241R51	3L	9098401	A	'ATTT'	ATTTATTTA	INS	TAAATAAAT	0.167	strelka	3_prime_UTR_variant	MODIFIER	bol	3UTR	bol	FBgn0011206
B241R51	3L	9101470	CT	'C'	TTAGCTTTT	INS	TTAGCTTTT	0.122	strelka	3_prime_UTR_variant	MODIFIER	bol	3UTR	bol	FBgn0011206
B241R51	3L	9753140	CTGT	'C'	GCTGCTGTT	INS	GCTGCTGTT	0.0548	mutect2	disruptive_inframe_deletion	MODERATE	CG42268	exon_2	CG42268	FBgn0259163
B241R51	3L	10082120	AAT	'A'	AAAAAATAA	INS	AAAAAATAA	0.162	mutect2	downstream_gene_variant	MODIFIER	CG14160	intron	dpr6	FBgn0040823
B241R51	3L	10167538	TA	'T'	TAAGTAAAA	INS	TAAGTAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	CG6628	intron	dpr10	FBgn0052057
B241R51	3L	18203782	CCATACATAGTAG	'C'	TCTACCATA	INS	TCTACCATA	0.214	strelka	downstream_gene_variant	MODIFIER	CG7320	intergenic	intergenic	intergenic
B241R51	3L	23871208	GTCA	'G'	TATCGTCAT	INS	TATCGTCAT	0.12	strelka	intron_variant	MODIFIER	CG40470	intron	CG40470	FBgn0058470
B241R51	3R	5063389	GA	'G'	TGAAGAAAA	INS	TGAAGAAAA	0.0694	strelka	intergenic_region	MODIFIER	CR45588-corto	intergenic	intergenic	intergenic
B241R51	3R	7005480	GA	'G'	GCCCGAAAA	INS	GCCCGAAAA	0.154	strelka	downstream_gene_variant	MODIFIER	CR45899	intergenic	intergenic	intergenic
B241R51	3R	9485983	GGT	'G'	TCTGGGTGT	INS	TCTGGGTGT	0.156	strelka	upstream_gene_variant	MODIFIER	CR45203	intron	CG16779	FBgn0037698
B241R51	3R	9798145	GT	'G'	AGACGTTTT	INS	AGACGTTTT	0.0845	strelka	3_prime_UTR_variant	MODIFIER	CG9467	3UTR	CG9467	FBgn0037758
B241R51	3R	11150669	CA	'C'	CTGGCAAAA	INS	CTGGCAAAA	0.222	strelka	upstream_gene_variant	MODIFIER	Ugt86Dc	intergenic	intergenic	intergenic
B241R51	3R	11184242	TTCCA	'T'	GCCGTTCCA	INS	GCCGTTCCA	0.0339	mutect2	intergenic_region	MODIFIER	Ugt86Dh-CG18577	intergenic	intergenic	intergenic
B241R51	3R	15170148	CA	'C'	TAGCCAAAA	INS	TAGCCAAAA	0.0714	strelka	downstream_gene_variant	MODIFIER	Mf	intron	Gyc88E	FBgn0038295
B241R51	3R	16577133	CA	'C'	TGGGCAAAA	INS	TGGGCAAAA	0.0789	strelka	upstream_gene_variant	MODIFIER	CG14903	intron	Scp2	FBgn0020907
B241R51	3R	18104393	GT	'G'	ATCTGTTTT	INS	ATCTGTTTT	0.259	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31242	intron	sr	FBgn0003499
B241R51	3R	19980651	GAGTT	'G'	AGTAGAGTT	INS	AGTAGAGTT	0.0545	mutect2	downstream_gene_variant	MODIFIER	CG31213	intron	Hs6st	FBgn0038755
B241R51	3R	20978654	CAA	'C'	GGTACAAAC	INS	GGTACAAAC	0.0448	mutect2	5_prime_UTR_variant	MODIFIER	Calx	exon_1	Calx	FBgn0013995
B241R51	3R	21428393	C	'CCGGGGCA'	TGCTCCGGG	INS	TGCTCCGGG	0.297	strelka	intron_variant	MODIFIER	lbl	intron	lbl	FBgn0008651
B241R51	3R	22100289	GA	'G'	GTCCGAAAA	INS	GTCCGAAAA	0.0877	strelka	upstream_gene_variant	MODIFIER	CG13407	intergenic	intergenic	intergenic
B241R51	3R	22134112	GA	'G'	CTACGAAAA	INS	CTACGAAAA	0.0822	strelka	5_prime_UTR_variant	MODIFIER	SKIP	exon_1	SKIP	FBgn0051163
B241R51	3R	22966295	T	'TCCAC'	AGTGTAGTG	INS	AGTGTAGTG	0.273	strelka	5_prime_UTR_variant	MODIFIER	Tpl94D	5UTR	Tpl94D	FBgn0051281
B241R51	3R	23374941	TAC	'T'	TGACTACAC	INS	TGACTACAC	0.103	strelka	upstream_gene_variant	MODIFIER	CR44322	intergenic	intergenic	intergenic
B241R51	3R	23941845	CT	'C'	GTTACTTTT	INS	GTTACTTTT	0.0952	strelka	upstream_gene_variant	MODIFIER	Gdh	intron	Gdh	FBgn0001098
B241R51	3R	26088684	CT	'C'	TATACTTTT	INS	TATACTTTT	0.333	strelka	downstream_gene_variant	MODIFIER	CR44319	intron	dysf	FBgn0039411
B241R51	3R	26439302	G	'GA'	GCATGAAAA	INS	TTTTCATGC	0.093	strelka	upstream_gene_variant	MODIFIER	tx	intergenic	intergenic	intergenic
B241R51	3R	27270632	CTGT	'C'	GGTGCTGTT	INS	GGTGCTGTT	0.0833	strelka	upstream_gene_variant	MODIFIER	CG5934	intron	l(3)mbt	FBgn0002441
B241R51	3R	27313895	GAAGCCAC	'G'	AATGGAAGC	INS	AATGGAAGC	0.212	strelka	upstream_gene_variant	MODIFIER	CR44287	intron	CG3339	FBgn0039510
B241R51	3R	28470105	G	'GA'	TACAGAAAA	INS	TTTTCTGTA	0.135	strelka	intron_variant	MODIFIER	beat-VI	intron	beat-VI	FBgn0039584
B241R51	4	921504	GT	'G'	AAAAGTTTT	INS	AAAAGTTTT	0.267	strelka	intron_variant	MODIFIER	eIF4G	intron	eIF4G	FBgn0023213
B241R51	4	1175425	GT	'G'	AATTGTTTT	INS	AATTGTTTT	0.25	strelka	intron_variant	MODIFIER	pho	intron	pho	FBgn0002521
B241R51	X	1766972	GA	'G'	GGCGGAAAA	INS	GGCGGAAAA	0.133	strelka	intergenic_region	MODIFIER	Scgdelta-CG42666	intergenic	intergenic	intergenic
B241R51	X	4408547	ATG	'A'	CGCAATGTG	INS	CGCAATGTG	0.2	strelka	upstream_gene_variant	MODIFIER	bi	ncRNA	CR32773	FBgn0052773
B241R51	X	4725469	AAC	'A'	AAAAAACAA	INS	AAAAAACAA	0.143	mutect2	intron_variant	MODIFIER	Proc-R	intron	Proc-R	FBgn0029723
B241R51	X	5245213	TCA	'T'	TCACTCACA	INS	TCACTCACA	0.15	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
B241R51	X	6517680	GCA	'G'	AAATGCACA	INS	AAATGCACA	0.182	strelka	downstream_gene_variant	MODIFIER	tRNA:CR32748	intron	CG42340	FBgn0259242
B241R51	X	7460429	AT	'A'	GAACATTTT	INS	GAACATTTT	0.185	strelka	non_coding_transcript_exon_variant	MODIFIER	CR44500	ncRNA	CR44500	FBgn0265693
B241R51	X	8496990	CA	'C'	AACCCAAAA	INS	AACCCAAAA	0.188	strelka	intron_variant	MODIFIER	CG33181	intron	CG33181	FBgn0053181
B241R51	X	9166203	TAGC	'T'	GAAGTAGCA	INS	GAAGTAGCA	0.0976	strelka	5_prime_UTR_variant	MODIFIER	mei-P26	exon_1	mei-P26	FBgn0026206
B241R51	X	10535905	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.19	strelka	intron_variant	MODIFIER	spri	intron	spri	FBgn0085443
B241R51	X	10984421	GA	'G'	GAGCGAAAA	INS	GAGCGAAAA	0.2	strelka	intron_variant	MODIFIER	CG42339	intron	CG42339	FBgn0259241
B241R51	X	11828235	GT	'G'	CATAGTTTT	INS	CATAGTTTT	0.152	strelka	intron_variant	MODIFIER	rudhira	intron	rudhira	FBgn0266019
B241R51	X	12816966	CA	'C'	AGTACAAAA	INS	AGTACAAAA	0.138	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
B241R51	X	13862961	CTCAA	'C'	GTGGCTCAA	INS	GTGGCTCAA	0.143	strelka	3_prime_UTR_variant	MODIFIER	mamo	3UTR	mamo	FBgn0267033
B241R51	X	14565365	C	'CT'	ATTTCTTTT	INS	ATTTCTTTT	0.148	strelka	intergenic_region	MODIFIER	CR45521-CG14414	intergenic	intergenic	intergenic
B241R51	X	17341705	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.125	strelka	intergenic_region	MODIFIER	B-H2-CR43491	intergenic	intergenic	intergenic
B241R51	X	17732328	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.278	strelka	intron_variant	MODIFIER	CG42684	intron	CG42684	FBgn0261570
B241R51	X	18186703	GTA	'G'	ACACGTACA	INS	ACACGTACA	0.0769	mutect2	intron_variant	MODIFIER	Frq2	intron	Frq2	FBgn0083228
B241R51	X	19392319	AT	'A'	GACTATTTT	INS	GACTATTTT	0.161	strelka	intron_variant	MODIFIER	kek5	intron	kek5	FBgn0031016
B241R51	X	19826733	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.179	strelka	upstream_gene_variant	MODIFIER	SkpE	intergenic	intergenic	intergenic
B241R53	2L	867348	GAC	'G'	CTCAGACAC	INS	CTCAGACAC	0.105	strelka	upstream_gene_variant	MODIFIER	aru	intron	aru	FBgn0029095
B241R53	2L	2279940	AC	'A'	AAAAACAAA	INS	AAAAACAAA	0.143	strelka	upstream_gene_variant	MODIFIER	CR43753	intergenic	intergenic	intergenic
B241R53	2L	2912853	CA	'C'	AGAACACAA	INS	AGAACACAA	0.105	strelka	5_prime_UTR_variant	MODIFIER	lilli	exon_2	lilli	FBgn0041111
B241R53	2L	4580672	C	'CTTT'	CCCCCTTTT	INS	CCCCCTTTT	0.118	strelka	upstream_gene_variant	MODIFIER	HP6	intron	dpy	FBgn0053196
B241R53	2L	7176544	T	'TACC'	GTAGTATAC	INS	GTAGTATAC	0.31	strelka	upstream_gene_variant	MODIFIER	CR44610	ncRNA	CR46210	FBgn0267929
B241R53	2L	7176549	A	'ATGAAAGTTT'	ATACACAAT	INS	ATTGTGTAT	0.3	strelka	upstream_gene_variant	MODIFIER	CR44610	ncRNA	CR46210	FBgn0267929
B241R53	2L	7563499	A	'AT'	TATTATTTT	INS	AAAATAATA	0.192	strelka	upstream_gene_variant	MODIFIER	CR46063	intron	RapGAP1	FBgn0264895
B241R53	2L	8940752	TA	'T'	TATTTAAAA	INS	TATTTAAAA	0.364	strelka	downstream_gene_variant	MODIFIER	Tsp29Fa	intron	CG9510	FBgn0032076
B241R53	2L	9364222	A	'ATC'	ATTTATCAA	INS	TTGATAAAT	0.5	strelka	upstream_gene_variant	MODIFIER	CR43404	intergenic	intergenic	intergenic
B241R53	2L	12466484	T	'TCTTATAATCTCAATGGCTC'	ACAATCTTG	INS	ACAATCTTG	0.5	strelka	intron_variant	MODIFIER	bun	intron	bun	FBgn0259176
B241R53	2L	12524164	GGT	'G'	GGTGGGTGT	INS	GGTGGGTGT	0.219	strelka	intron_variant	MODIFIER	bun	intron	bun	FBgn0259176
B241R53	2L	12542611	G	'GT'	TTTTGTTTT	INS	AAAACAAAA	0.148	strelka	upstream_gene_variant	MODIFIER	CR42746	intron	bun	FBgn0259176
B241R53	2L	14679207	AT	'A'	ATTCATTTT	INS	ATTCATTTT	0.148	strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
B241R53	2L	14945677	CCT	'C'	AATCCCTCT	INS	AATCCCTCT	0.12	strelka	intron_variant	MODIFIER	CG42313	intron	CG42313	FBgn0259213
B241R53	2L	16459357	CA	'C'	TTTTCAAAA	INS	TTTTCAAAA	0.161	strelka	downstream_gene_variant	MODIFIER	Idgf3	intergenic	intergenic	intergenic
B241R53	2R	4348147	GT	'G'	ATGTGTTTT	INS	ATGTGTTTT	0.25	strelka	intron_variant	MODIFIER	Gprk1	intron	Gprk1	FBgn0260798
B241R53	2R	11130461	TCAG	'T'	GTCGTCAGC	INS	GTCGTCAGC	0.138	strelka	upstream_gene_variant	MODIFIER	Cyp12d1-d	intergenic	intergenic	intergenic
B241R53	2R	11700077	TTCCA	'T'	ACATTTCCA	INS	ACATTTCCA	0.242	strelka	downstream_gene_variant	MODIFIER	CG13197	pseudogene	Ir48a	FBgn0053471
B241R53	2R	12318030	GTACA	'G'	AGAGGTACA	INS	AGAGGTACA	0.364	strelka	upstream_gene_variant	MODIFIER	CG13163	intergenic	intergenic	intergenic
B241R53	2R	13060927	G	'GGGTGGT'	GGGGGCAGC	INS	GCTGCCCCC	0.37	strelka	intron_variant	MODIFIER	Drl-2	intron	Drl-2	FBgn0033791
B241R53	2R	13736477	TGCC	'T'	GAGCTGCCG	INS	GAGCTGCCG	0.118	mutect2	intron_variant	MODIFIER	fas	intron	fas	FBgn0000633
B241R53	2R	16561541	AC	'A'	TTTAACCAA	INS	TTTAACCAA	0.308	strelka	upstream_gene_variant	MODIFIER	CG4945	intron	DAT	FBgn0034136
B241R53	2R	17646345	TA	'T'	ACATTAAAA	INS	ACATTAAAA	0.19	strelka	downstream_gene_variant	MODIFIER	CCHa1-R	intergenic	intergenic	intergenic
B241R53	2R	17803601	C	'CACTAAGTGTATT'	GGCACTACT	INS	GGCACTACT	0.333	strelka	upstream_gene_variant	MODIFIER	CR45270	intron	grh	FBgn0259211
B241R53	2R	17952912	GA	'G'	AATCGAAAA	INS	AATCGAAAA	0.154	strelka	upstream_gene_variant	MODIFIER	CR44418	intergenic	intergenic	intergenic
B241R53	2R	23489939	GGTT	'G'	TAATGGTTG	INS	TAATGGTTG	0.0909	mutect2	disruptive_inframe_deletion	MODERATE	CG43795	exon	CG43795	FBgn0264339
B241R53	3L	1440860	T	'TGCCAGCCAGCCAGCCA'	CCATTGCCA	INS	CCATTGCCA	0.2	strelka	upstream_gene_variant	MODIFIER	SA-2	intron	Ptp61F	FBgn0267487
B241R53	3L	5269574	CT	'C'	CCTTCTTTT	INS	CCTTCTTTT	0.278	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
B241R53	3L	9380777	CCT	'C'	AAGCCCTGG	INS	AAGCCCTGG	0.0952	mutect2	upstream_gene_variant	MODIFIER	Hsp26	exon_2	CR43481	FBgn0263492
B241R53	3L	11553777	AT	'A'	ATGGATTTC	INS	ATGGATTTC	0.214	strelka	upstream_gene_variant	MODIFIER	Mob2	intron	Mob2	FBgn0259481
B241R53	3L	11764929	A	'AGT'	TGCGAGTGT	INS	ACACTCGCA	0.176	strelka	downstream_gene_variant	MODIFIER	Muc68D	intron	CG6024	FBgn0036202
B241R53	3L	14464792	CA	'C'	TAGCCAAAA	INS	TAGCCAAAA	0.138	strelka	intron_variant	MODIFIER	bbg	intron	bbg	FBgn0087007
B241R53	3L	15617493	GA	'G'	CTCGGAAAA	INS	CTCGGAAAA	0.1	mutect2,strelka	upstream_gene_variant	MODIFIER	CG13449	intron	comm3	FBgn0259236
B241R53	3L	17441600	GAC	'G'	AACCGACAC	INS	AACCGACAC	0.222	strelka	upstream_gene_variant	MODIFIER	CG18265	intron	CG18265	FBgn0036725
B241R53	3L	21546495	CA	'C'	CTGGCAAAA	INS	CTGGCAAAA	0.219	strelka	downstream_gene_variant	MODIFIER	CG33290	intron	Wnk	FBgn0037098
B241R53	3L	23634486	TA	'T'	AGTTTAAAA	INS	AGTTTAAAA	0.25	strelka	intron_variant	MODIFIER	AGO3	intron	AGO3	FBgn0250816
B241R53	3R	9886934	G	'GCTTTCTCTTTCTCTTT'	TTGTGCTGG	INS	CCAGCACAA	0.188	strelka	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
B241R53	3R	9886936	TGGGGAA	'T'	GTGCTGGGG	INS	GTGCTGGGG	0.222	strelka	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
B241R53	3R	10272550	GTGTA	'G'	GTGTGTGTA	INS	GTGTGTGTA	0.0577	mutect2	intron_variant	MODIFIER	CG43143	intron	CG43143	FBgn0262617
B241R53	3R	10768967	CT	'C'	CAGCCTTTT	INS	CAGCCTTTT	0.143	strelka	frameshift_variant	HIGH	CG45076	exon	CG45076	FBgn0266446
B241R53	3R	11049201	AAC	'A'	AACAAACAC	INS	AACAAACAC	0.158	strelka	3_prime_UTR_variant	MODIFIER	CG34114	3UTR	CG34114	FBgn0083950
B241R53	3R	13815652	CA	'C'	CAACCAAAA	INS	CAACCAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	CR43642	exon_1	CR43641	FBgn0263650
B241R53	3R	16172123	CA	'C'	TATACAAAA	INS	TATACAAAA	0.154	strelka	5_prime_UTR_variant	MODIFIER	CG8925	5UTR	CG8925	FBgn0038404
B241R53	3R	17453211	A	'ATGCC'	AACGAGCTG	INS	CAGCTCGTT	0.5	strelka	upstream_gene_variant	MODIFIER	Eh	intergenic	intergenic	intergenic
B241R53	3R	17453216	C	'CT'	GCTGCGGCA	INS	GCTGCGGCA	0.524	strelka	upstream_gene_variant	MODIFIER	Eh	intergenic	intergenic	intergenic
B241R53	3R	18671551	C	'CCA'	GGCCCAAAA	INS	GGCCCAAAA	0.278	strelka	upstream_gene_variant	MODIFIER	CR45028	intron	CG7702	FBgn0038638
B241R53	3R	21347004	ATAT	'A'	GTACATATT	INS	GTACATATT	0.136	strelka	downstream_gene_variant	MODIFIER	mod(mdg4)	intron	CG16791	FBgn0038881
B241R53	3R	21936120	GGT	'G'	AGGGGGTGT	INS	AGGGGGTGT	0.16	strelka	intergenic_region	MODIFIER	CG17843-Eip93F	intergenic	intergenic	intergenic
B241R53	3R	23336425	GA	'G'	ATCCGAAAA	INS	ATCCGAAAA	0.133	strelka	upstream_gene_variant	MODIFIER	CR46090	intron	pnt	FBgn0003118
B241R53	3R	24509991	CA	'C'	ATAACAAAC	INS	ATAACAAAC	0.182	strelka	intron_variant	MODIFIER	nAChRbeta2	intron	nAChRbeta2	FBgn0004118
B241R53	3R	24605591	AC	'A'	ACATACCAT	INS	ACATACCAT	0.261	strelka	upstream_gene_variant	MODIFIER	CR46095	intron	mld	FBgn0263490
B241R53	3R	25423972	GCA	'G'	CCCTGCACA	INS	CCCTGCACA	0.148	strelka	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
B241R53	3R	25868400	TA	'T'	CCGTTAAAA	INS	CCGTTAAAA	0.0943	strelka	downstream_gene_variant	MODIFIER	Tsp96F	intron	CG5890	FBgn0039380
B241R53	3R	27172532	ATG	'A'	TAGGATGTT	INS	TAGGATGTT	0.118	mutect2	3_prime_UTR_variant	MODIFIER	Ser	3UTR	Ser	FBgn0004197
B241R53	3R	29467994	AAGTG	'A'	GTGTAAGTG	INS	GTGTAAGTG	0.0682	mutect2	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
B241R53	3R	30484803	GT	'G'	GCGTGTTTT	INS	GCGTGTTTT	0.167	strelka	upstream_gene_variant	MODIFIER	Jon99Fi	intron	PH4alphaEFB	FBgn0039776
B241R53	X	2094480	TCA	'T'	ACACTCACA	INS	ACACTCACA	0.158	strelka	5_prime_UTR_variant	MODIFIER	csw	5UTR	csw	FBgn0000382
B241R53	X	4556280	TTGC	'T'	GATGTTGCT	INS	GATGTTGCT	0.25	strelka	upstream_gene_variant	MODIFIER	CG11436	ncRNA	CR32773	FBgn0052773
B241R53	X	4712200	CT	'C'	TTTACTTTT	INS	TTTACTTTT	0.25	strelka	downstream_gene_variant	MODIFIER	CG7024	intron	Proc-R	FBgn0029723
B241R53	X	4910774	T	'TG'	TTATTGGTT	INS	TTATTGGTT	0.182	strelka	upstream_gene_variant	MODIFIER	CG32772	intron	CG32772	FBgn0052772
B241R53	X	5084167	GCA	'G'	GAAAGCACA	INS	GAAAGCACA	0.273	strelka	upstream_gene_variant	MODIFIER	rg	intron	CG32767	FBgn0052767
B241R53	X	5835804	CAA	'C'	GGGGCAAAA	INS	GGGGCAAAA	0.235	strelka	upstream_gene_variant	MODIFIER	CR43264	intron	CG15765	FBgn0029814
B241R53	X	7302227	ATG	'A'	TTGCATGTG	INS	TTGCATGTG	0.333	strelka	intron_variant	MODIFIER	CR44357	intron	CG1677	FBgn0029941
B241R53	X	7909109	GGT	'G'	GAAGGGTGT	INS	GAAGGGTGT	0.167	strelka	5_prime_UTR_variant	MODIFIER	CG1444	5UTR	CG1444	FBgn0029975
B241R53	X	8313946	GCA	'G'	GTACGCACA	INS	GTACGCACA	0.174	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
B241R53	X	8974319	GCT	'G'	GATAGCTCT	INS	GATAGCTCT	0.13	strelka	upstream_gene_variant	MODIFIER	CG10962	ncRNA	CR43836	FBgn0264384
B241R53	X	9959178	GT	'G'	CCTCGTTTT	INS	CCTCGTTTT	0.2	strelka	downstream_gene_variant	MODIFIER	CG1791	intergenic	intergenic	intergenic
B241R53	X	11981213	TCA	'T'	CAAATCACA	INS	CAAATCACA	0.25	strelka	upstream_gene_variant	MODIFIER	cac	intron	cac	FBgn0263111
B241R53	X	12564948	C	'CA'	GGTGCAAAA	INS	GGTGCAAAA	0.176	strelka	downstream_gene_variant	MODIFIER	CG11138	intron	CG43921	FBgn0264542
B241R53	X	14889713	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.16	strelka	intron_variant	MODIFIER	Flo2	intron	CG9514	FBgn0030592
B241R53	X	14990123	CTG	'C'	GTTGCTGTG	INS	GTTGCTGTG	0.24	strelka	intron_variant	MODIFIER	eag	intron	eag	FBgn0000535
B241R53	X	15685314	G	'GGAGATA'	AGATGGAGA	INS	TCTCCATCT	0.0417	mutect2	conservative_inframe_insertion	MODERATE	CG15599	exon	CG15599	FBgn0030667
B241R53	X	16198831	AGTT	'A'	CGCAAGTTG	INS	CGCAAGTTG	0.1	strelka	intergenic_region	MODIFIER	mir-985-disco	intergenic	intergenic	intergenic
B241R53	X	20768479	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.16	strelka	3_prime_UTR_variant	MODIFIER	shakB	3UTR	shakB	FBgn0085387
B241R55	2L	3702952	AGCAATGCTTGTTTGGTTATTTTT	'A'	AAATAGCAA	INS	AAATAGCAA	0.194	strelka	upstream_gene_variant	MODIFIER	CG10031	intergenic	intergenic	intergenic
B241R55	2L	5574172	A	'AAACC'	AACTAACCC	INS	GGGTTAGTT	0.158	strelka	intergenic_region	MODIFIER	snRNA:U4:25F-CG14011	intergenic	intergenic	intergenic
B241R55	2L	6131702	G	'GAATAGA'	TCTTGATGG	INS	CCATCAAGA	0.262	strelka	upstream_gene_variant	MODIFIER	WDR79	intron	CG9222	FBgn0031784
B241R55	2L	6473403	A	'AAG'	AAAAAAGAT	INS	ATCTTTTTT	0.111	strelka	upstream_gene_variant	MODIFIER	mmy	intron	mmy	FBgn0259749
B241R55	2L	8588044	TGA	'T'	TAGGTGAGA	INS	TAGGTGAGA	0.0889	strelka	downstream_gene_variant	MODIFIER	CR43855	intron	Sema-1a	FBgn0011259
B241R55	2L	8666604	ATTTCGCTTT	'A'	GTAGATTTC	INS	GTAGATTTC	0.235	strelka	conservative_inframe_deletion	MODERATE	Sema-1a	exon	Sema-1a	FBgn0011259
B241R55	2L	8805651	T	'TTA'	ATCCTTATA	INS	ATCCTTATA	0.167	strelka	intergenic_region	MODIFIER	CG42710-SoxN	intergenic	intergenic	intergenic
B241R55	2L	9530995	TA	'T'	TTTTTATTT	INS	TTTTTATTT	0.167	mutect2	upstream_gene_variant	MODIFIER	Oatp30B	intron	Oatp30B	FBgn0032123
B241R55	2L	9836323	C	'CAAAGACTTT'	GTTGCACAG	INS	GTTGCACAG	0.217	strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
B241R55	2L	9864493	G	'GC'	AGTAGTTAA	INS	TTAACTACT	0.2	strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
B241R55	2L	10111939	C	'CA'	CCCCCAAAA	INS	CCCCCAAAA	0.114	strelka	intron_variant	MODIFIER	CG44153	intron	CG34109	FBgn0083945
B241R55	2L	12409189	T	'TTTAGAA'	GGTATTGTT	INS	GGTATTGTT	0.444	strelka	upstream_gene_variant	MODIFIER	vir-1	intron	vir-1	FBgn0043841
B241R55	2L	13045418	T	'TC'	TCCTTCCCC	INS	TCCTTCCCC	0.194	strelka	intron_variant	MODIFIER	CG9932	intron	CG9932	FBgn0262160
B241R55	2L	14655556	TGA	'T'	TGTGTGAGC	INS	TGTGTGAGC	0.0426	mutect2	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
B241R55	2L	16323319	TCGA	'T'	TTATTCGAT	INS	TTATTCGAT	0.333	strelka	upstream_gene_variant	MODIFIER	CG4278	intron	cact	FBgn0000250
B241R55	2L	16506467	TCTG	'T'	AGGCTCTGT	INS	AGGCTCTGT	0.0727	strelka	conservative_inframe_deletion	MODERATE	Tpr2	exon_3	Tpr2	FBgn0032586
B241R55	2R	7229207	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.0889	strelka	downstream_gene_variant	MODIFIER	Or43a	intergenic	intergenic	intergenic
B241R55	2R	10658503	GC	'G'	ACTTGCCCC	INS	ACTTGCCCC	0.214	strelka	upstream_gene_variant	MODIFIER	CR44452	intergenic	intergenic	intergenic
B241R55	2R	11051113	TA	'T'	TGTGTATGT	INS	TGTGTATGT	0.0476	mutect2	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R55	2R	16081728	CTGT	'C'	GTTGCTGTT	INS	GTTGCTGTT	0.0909	strelka	3_prime_UTR_variant	MODIFIER	Dg	3UTR	Dg	FBgn0034072
B241R55	2R	17087032	CG	'C'	CTATCGTAT	INS	CTATCGTAT	0.281	strelka	upstream_gene_variant	MODIFIER	CG6984	intron	CG30460	FBgn0050460
B241R55	2R	22061209	TA	'T'	TATGTAAAA	INS	TATGTAAAA	0.178	strelka	5_prime_UTR_variant	MODIFIER	Snp	exon_1	Snp	FBgn0265192
B241R55	3L	648535	AAGTGAAGAGCACCTGGAAATTGCATTAAT	'A'	AGCGAAGTG	INS	AGCGAAGTG	0.304	strelka	5_prime_UTR_variant	MODIFIER	Gale	intergenic	intergenic	intergenic
B241R55	3L	2569042	C	'CT'	CCCCCTTTT	INS	CCCCCTTTT	0.0727	strelka	intron_variant	MODIFIER	msn	intron	msn	FBgn0010909
B241R55	3L	3912807	TG	'T'	TTTTTGTGC	INS	TTTTTGTGC	0.0816	mutect2	upstream_gene_variant	MODIFIER	mge	intron	Eip63F-1	FBgn0004910
B241R55	3L	5076399	A	'AT'	TGCCATTTT	INS	AAAATGGCA	0.125	strelka	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
B241R55	3L	5509661	TCATA	'T'	TTTGTCATA	INS	TTTGTCATA	0.194	strelka	downstream_gene_variant	MODIFIER	Lkr	intron	CG34342	FBgn0085371
B241R55	3L	5509673	T	'TGACCGTACGGATTTTCTTG'	TTTGTCAAG	INS	TTTGTCAAG	0.184	strelka	downstream_gene_variant	MODIFIER	Lkr	intron	CG34342	FBgn0085371
B241R55	3L	6749671	CCTG	'C'	GCCGCCTGC	INS	GCCGCCTGC	0.08	strelka	conservative_inframe_deletion	MODERATE	velo	exon_4	velo	FBgn0035713
B241R55	3L	8751724	CAT	'C'	CCACCATTC	INS	CCACCATTC	0.167	strelka	upstream_gene_variant	MODIFIER	CG13306	intergenic	intergenic	intergenic
B241R55	3L	8751729	GTTCCTCTT	'G'	ATTCGTTCC	INS	ATTCGTTCC	0.167	strelka	upstream_gene_variant	MODIFIER	CG13306	intergenic	intergenic	intergenic
B241R55	3L	8751739	ATTTGTTTGCATTCAGCT	'A'	CTTGATTTG	INS	CTTGATTTG	0.167	strelka	upstream_gene_variant	MODIFIER	CG13306	intergenic	intergenic	intergenic
B241R55	3L	10354068	T	'TC'	TCTTTTTTT	INS	TCTTTTTTT	0.606	strelka	intron_variant	MODIFIER	CR46006	ncRNA	CR46006	FBgn0267668
B241R55	3L	10475736	C	'CACTCACCCACTG'	CACCCACTG	INS	CACCCACTG	0.143	strelka	intergenic_region	MODIFIER	S-Lap3-A2bp1	intergenic	intergenic	intergenic
B241R55	3L	10975461	CA	'C'	TCGACAAAA	INS	TCGACAAAA	0.109	strelka	downstream_gene_variant	MODIFIER	CG14147	intergenic	intergenic	intergenic
B241R55	3L	13356874	CA	'C'	ATATCAAAA	INS	ATATCAAAA	0.286	strelka	downstream_gene_variant	MODIFIER	CG17687	intron	Nplp2	FBgn0040813
B241R55	3L	16495402	GT	'G'	AGATGTTTT	INS	AGATGTTTT	0.207	strelka	5_prime_UTR_variant	MODIFIER	CG42514	5UTR	CG42514	FBgn0260388
B241R55	3L	20876388	GAC	'G'	CAAAGACAC	INS	CAAAGACAC	0.0678	strelka	intron_variant	MODIFIER	CG32432	intron	CG32432	FBgn0052432
B241R55	3L	24250306	CA	'C'	CTTACAAAA	INS	CTTACAAAA	0.174	strelka	intron_variant	MODIFIER	Snap25	intron	Snap25	FBgn0011288
B241R55	3R	900902	G	'GT'	AACAGTTTT	INS	AAAACTGTT	0.185	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
B241R55	3R	3286765	GT	'G'	TTTTGTTTT	INS	TTTTGTTTT	0.135	strelka	intergenic_region	MODIFIER	CG45783-spok	intergenic	intergenic	intergenic
B241R55	3R	9492098	GAC	'G'	AGCAGACAC	INS	AGCAGACAC	0.188	strelka	upstream_gene_variant	MODIFIER	CG8147	intron	CG16779	FBgn0037698
B241R55	3R	11030510	CGGGAAGTGGGTGGGAAGTGGGAGGGAAGTGGGA	'C'	TCAGCGGGA	INS	TCAGCGGGA	0.125	mutect2	downstream_gene_variant	MODIFIER	CR46007	intron	CG34114	FBgn0083950
B241R55	3R	11046079	G	'GA'	AAAAGAAAA	INS	TTTTCTTTT	0.156	strelka	downstream_gene_variant	MODIFIER	CG34114	intron	CG34114	FBgn0083950
B241R55	3R	12044066	AGCT	'A'	GAGCAGCTG	INS	GAGCAGCTG	0.231	strelka	downstream_gene_variant	MODIFIER	CG14736	intergenic	intergenic	intergenic
B241R55	3R	20924683	CT	'C'	CGCCCTTTT	INS	CGCCCTTTT	0.0755	strelka	intron_variant	MODIFIER	CG31191	intron	hdly	FBgn0038842
B241R55	3R	22684529	TGTGA	'T'	TGTGTGTGA	INS	TGTGTGTGA	0.0492	mutect2	upstream_gene_variant	MODIFIER	CG17625	intergenic	intergenic	intergenic
B241R55	3R	24325530	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.182	strelka	downstream_gene_variant	MODIFIER	CG5728	intron	BRWD3	FBgn0011785
B241R55	3R	24983532	CA	'C'	CTCACAAAA	INS	CTCACAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	tnc	intergenic	intergenic	intergenic
B241R55	3R	26391332	G	'GA'	GGTCGAAAA	INS	TTTTCGACC	0.0976	strelka	intergenic_region	MODIFIER	CG33970-ppk15	intergenic	intergenic	intergenic
B241R55	3R	30069386	CGA	'C'	CATGCGAGA	INS	CATGCGAGA	0.109	strelka	intron_variant	MODIFIER	sima	intron	sima	FBgn0266411
B241R55	3R	30460827	CA	'C'	TGCCCAAAA	INS	TGCCCAAAA	0.118	strelka	5_prime_UTR_variant	MODIFIER	CDase	exon_1	CDase	FBgn0039774
B241R55	3R	30558174	TG	'T'	AAAATGTAT	INS	AAAATGTAT	0.37	strelka	intron_variant	MODIFIER	tmod	intron	CG34155	FBgn0083991
B241R55	3R	30558180	TTAATTGAGAGAGACGTATCTCCTAAAC	'T'	TATGTTAAT	INS	TATGTTAAT	0.214	strelka	upstream_gene_variant	MODIFIER	tmod	intron	CG34155	FBgn0083991
B241R55	4	886421	TACGGACAG	'T'	TTCATACGG	INS	TTCATACGG	0.118	mutect2	downstream_gene_variant	MODIFIER	CR44029	intron	unc-13	FBgn0025726
B241R55	X	2479852	T	'TA'	TGGTTAAAA	INS	TGGTTAAAA	0.25	strelka	3_prime_UTR_variant	MODIFIER	trol	3UTR	trol	FBgn0267911
B241R55	X	2658076	A	'AT'	TGCTATTTT	INS	AAAATAGCA	0.174	strelka	upstream_gene_variant	MODIFIER	sgg	intron	sgg	FBgn0003371
B241R55	X	6385886	GA	'G'	TGTCGAAAA	INS	TGTCGAAAA	0.217	strelka	downstream_gene_variant	MODIFIER	CG33664	intergenic	intergenic	intergenic
B241R55	X	7172295	GA	'G'	GAGAGAAAA	INS	GAGAGAAAA	0.333	strelka	intron_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
B241R55	X	8088853	A	'AT'	TTCCATTTT	INS	AAAATGGAA	0.211	strelka	3_prime_UTR_variant	MODIFIER	UbcE2H	3UTR	UbcE2H	FBgn0029996
B241R55	X	10811319	CT	'C'	TTCCCTTTT	INS	TTCCCTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	Imp	intron	Imp	FBgn0262735
B241R55	X	11380287	C	'CT'	TTTGCTTCT	INS	TTTGCTTCT	0.286	strelka	upstream_gene_variant	MODIFIER	dlg1	intron	dlg1	FBgn0001624
B241R55	X	13816651	AAC	'A'	CAACAACAA	INS	CAACAACAA	0.0952	mutect2	downstream_gene_variant	MODIFIER	CG11095	intron	Clic	FBgn0030529
B241R55	X	16699313	GT	'G'	CCTCGTTTT	INS	CCTCGTTTT	0.167	strelka	3_prime_UTR_variant	MODIFIER	CG9676	3UTR	CG9676	FBgn0030773
B241R55	X	17693423	GAAC	'G'	AGCCGAACA	INS	AGCCGAACA	0.188	strelka	intron_variant	MODIFIER	chas	intron	chas	FBgn0263258
B241R55	X	19020008	GC	'G'	CAGTGCAAA	INS	CAGTGCAAA	0.1	strelka	intron_variant	MODIFIER	CG43759	intron	CG43759	FBgn0264090
B241R55	X	19637989	GCA	'G'	AACGGCACA	INS	AACGGCACA	0.111	strelka	5_prime_UTR_variant	MODIFIER	e(y)3	exon_1	e(y)3	FBgn0087008
B241R55	X	22834552	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	mir-2491	intron	CG42346	FBgn0259677
B241R57	2L	4039156	T	'TG'	ATGGTGAAA	INS	ATGGTGAAA	0.296	strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
B241R57	2L	4095298	A	'AT'	TTTTATTTT	INS	AAAATAAAA	0.217	strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
B241R57	2L	4787892	GT	'G'	GCGTGTTTT	INS	GCGTGTTTT	0.114	strelka	intron_variant	MODIFIER	CG15630	intron	CG15630	FBgn0031627
B241R57	2L	5751506	AT	'A'	CGTGATTTT	INS	CGTGATTTT	0.324	strelka	downstream_gene_variant	MODIFIER	CG11029	intron	CG11030	FBgn0031736
B241R57	2L	8827912	GGCA	'G'	CGGCGGCAG	INS	CGGCGGCAG	0.231	strelka	disruptive_inframe_deletion	MODERATE	SoxN	exon	SoxN	FBgn0029123
B241R57	2L	8922906	CCT	'C'	TCCCCCTCT	INS	TCCCCCTCT	0.118	strelka	intron_variant	MODIFIER	CG34398	intron	CG34398	FBgn0085427
B241R57	2L	10765872	G	'GT'	AAATGTTTT	INS	AAAACATTT	0.19	strelka	3_prime_UTR_variant	MODIFIER	Ubc2	3UTR	Ubc2	FBgn0015320
B241R57	2L	10778177	TTTG	'T'	GTTGTTTGT	INS	GTTGTTTGT	0.143	strelka	intron_variant	MODIFIER	CG31869	intron	CG31869	FBgn0051869
B241R57	2L	11600089	A	'AAG'	TCTTAATAG	INS	CTATTAAGA	0.375	strelka	intron_variant	MODIFIER	kek2	intron	kek2	FBgn0015400
B241R57	2L	12265659	TA	'T'	TTTTTATTT	INS	TTTTTATTT	0.0833	mutect2	intron_variant	MODIFIER	aret	intron	bru1	FBgn0000114
B241R57	2L	12437721	AGCCATAT	'A'	AACAAGCCA	INS	AACAAGCCA	0.222	strelka	upstream_gene_variant	MODIFIER	SC35	intron	Elf	FBgn0020443
B241R57	2L	16414496	T	'TA'	TGGTTAGTG	INS	TGGTTAGTG	0.333	strelka	downstream_gene_variant	MODIFIER	snoRNA:Me28S-A2958	intron	CG5888	FBgn0028523
B241R57	2L	16414498	GTGATT	'G'	GTTAGTGAT	INS	GTTAGTGAT	0.353	strelka	downstream_gene_variant	MODIFIER	snoRNA:Me28S-A2958	intron	CG5888	FBgn0028523
B241R57	2L	18817727	C	'CG'	TGATCGGGT	INS	TGATCGGGT	0.0851	strelka	upstream_gene_variant	MODIFIER	CG17324	intergenic	intergenic	intergenic
B241R57	2R	1010879	TACCCTTCGC	'T'	ATTGTACCC	INS	ATTGTACCC	0.286	strelka	intergenic_region	MODIFIER	CG40498-CR41257	intergenic	intergenic	intergenic
B241R57	2R	7743041	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.125	strelka	upstream_gene_variant	MODIFIER	CG30497	intron	CG30497	FBgn0050497
B241R57	2R	10982710	TA	'T'	TTTTTATTT	INS	TTTTTATTT	0	consensus	3_prime_UTR_variant	MODIFIER	luna	3UTR	luna	FBgn0040765
B241R57	2R	12486211	ATGT	'A'	GTCGATGTT	INS	GTCGATGTT	0.0976	strelka	downstream_gene_variant	MODIFIER	CG34234	intron	Dh44-R2	FBgn0033744
B241R57	2R	13315747	TGC	'T'	TGTGTGCGT	INS	TGTGTGCGT	0.0833	mutect2	intergenic_region	MODIFIER	CG17047-CR44206	intergenic	intergenic	intergenic
B241R57	2R	13691997	ACGG	'A'	ATGGACGGC	INS	ATGGACGGC	0.0714	mutect2	disruptive_inframe_deletion	MODERATE	CG6220	exon	CG6220	FBgn0033865
B241R57	2R	17646345	TA	'T'	ACATTAAAA	INS	ACATTAAAA	0.182	strelka	downstream_gene_variant	MODIFIER	CCHa1-R	intergenic	intergenic	intergenic
B241R57	2R	18344908	T	'TC'	CTGGTCCCC	INS	CTGGTCCCC	0.19	strelka	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
B241R57	2R	20480446	GT	'G'	AAGAGTTTT	INS	AAGAGTTTT	0.167	strelka	downstream_gene_variant	MODIFIER	CG12484	intergenic	intergenic	intergenic
B241R57	2R	21447103	A	'AAT'	AAAAAGTTT	INS	AAACTTTTT	0.185	strelka	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
B241R57	2R	21585283	GCA	'G'	GCGCGCACA	INS	GCGCGCACA	0.143	strelka	3_prime_UTR_variant	MODIFIER	CG30222	3UTR	CG30222	FBgn0050222
B241R57	2R	22003279	G	'GTGTACATTT'	AGGAGTGTA	INS	TACACTCCT	0.227	strelka	intron_variant	MODIFIER	CG34370	intron	CG34370	FBgn0085399
B241R57	2R	22608041	AC	'A'	TATAACAAA	INS	TATAACAAA	0.2	strelka	upstream_gene_variant	MODIFIER	CG4294	intergenic	intergenic	intergenic
B241R57	2R	23071989	CA	'C'	TCGACAAAA	INS	TCGACAAAA	0.154	strelka	upstream_gene_variant	MODIFIER	tRNA:CR30202	intergenic	intergenic	intergenic
B241R57	2R	24599605	T	'TA'	TACGTAACC	INS	TACGTAACC	0.105	strelka	upstream_gene_variant	MODIFIER	CG3548	intron	ATPsynF	FBgn0035032
B241R57	2R	24727549	AAC	'A'	ATCTAACAC	INS	ATCTAACAC	0.154	strelka	intron_variant	MODIFIER	Mid1	intron	Mid1	FBgn0053988
B241R57	3L	1995420	A	'ATGTGATTCCT'	ATTGATTTA	INS	TAAATCAAT	0.103	mutect2	intergenic_region	MODIFIER	CG1139-CG42841	intergenic	intergenic	intergenic
B241R57	3L	2042138	TCG	'T'	AGACTCGCC	INS	AGACTCGCC	0.0952	strelka	frameshift_variant	HIGH	sls	exon_35	sls	FBgn0086906
B241R57	3L	2554933	T	'TTA'	TTTATTTTT	INS	TTTATTTTT	0	consensus	3_prime_UTR_variant	MODIFIER	msn	3UTR	msn	FBgn0010909
B241R57	3L	4221695	A	'AT'	TGGGATTTT	INS	AAAATCCCA	0.129	strelka	downstream_gene_variant	MODIFIER	CR32252	intron	CG43367	FBgn0263110
B241R57	3L	5197736	A	'AT'	TCCTATTTT	INS	AAAATAGGA	0.1	strelka	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
B241R57	3L	6844891	T	'TCCATTTCCCATTTC'	ACTTTCCAT	INS	ACTTTCCAT	0.233	strelka	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
B241R57	3L	8751729	GTTCCTCTT	'G'	ATTCGTTCC	INS	ATTCGTTCC	0.2	strelka	upstream_gene_variant	MODIFIER	CG13306	intergenic	intergenic	intergenic
B241R57	3L	8751739	ATTTGTTTGCATTCAGCT	'A'	CTTGATTTG	INS	CTTGATTTG	0.214	strelka	upstream_gene_variant	MODIFIER	CG13306	intergenic	intergenic	intergenic
B241R57	3L	10368968	C	'CACATACATAAATACATATGT'	TCCACACAT	INS	TCCACACAT	0.176	strelka	downstream_gene_variant	MODIFIER	CR46006	intergenic	intergenic	intergenic
B241R57	3L	10867355	C	'CA'	TCGACAAAA	INS	TCGACAAAA	0.1	strelka	upstream_gene_variant	MODIFIER	tna	intron	tna	FBgn0026160
B241R57	3L	11009078	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.2	strelka	5_prime_UTR_variant	MODIFIER	klu	exon_1	klu	FBgn0013469
B241R57	3L	12240153	T	'TAATCCCCAGAG'	TTTTTAATT	INS	TTTTTAATT	0.226	strelka	intron_variant	MODIFIER	app	intron	app	FBgn0260941
B241R57	3L	12686984	A	'AT'	AAGGATTGA	INS	TCAATCCTT	0.172	strelka	intergenic_region	MODIFIER	CR44552-mirr	intergenic	intergenic	intergenic
B241R57	3L	13620071	GA	'G'	TAGCGAAAA	INS	TAGCGAAAA	0.172	strelka	upstream_gene_variant	MODIFIER	mir-289	intron	bru3	FBgn0264001
B241R57	3L	15073084	GAA	'G'	GCACGAAGA	INS	GCACGAAGA	0.0952	mutect2	frameshift_variant	HIGH	cp309	exon_7	Plp	FBgn0086690
B241R57	3L	15780735	A	'AT'	TCTTATTTT	INS	AAAATAAGA	0.0345	mutect2	intergenic_region	MODIFIER	CR45240-CG6244	intergenic	intergenic	intergenic
B241R57	3L	18540501	GCA	'G'	TCACGCACA	INS	TCACGCACA	0.227	strelka	intergenic_region	MODIFIER	CG32198-AstC-R1	intergenic	intergenic	intergenic
B241R57	3L	25049690	CTAAA	'C'	TCTTCTAAA	INS	TCTTCTAAA	0.408	strelka	intergenic_region	MODIFIER	CG40002-Set1	intergenic	intergenic	intergenic
B241R57	3L	25836994	AT	'A'	GAACATTTT	INS	GAACATTTT	0.188	strelka	intron_variant	MODIFIER	CG40178	intron	CG40178	FBgn0058178
B241R57	3L	26018867	CAT	'C'	CCGACATAT	INS	CCGACATAT	0.167	strelka	upstream_gene_variant	MODIFIER	CG40178	intergenic	intergenic	intergenic
B241R57	3L	26869449	G	'GT'	ACATGTTTT	INS	AAAACATGT	0.167	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
B241R57	3R	5311501	GA	'G'	GTCAGAAAA	INS	GTCAGAAAA	0.129	strelka	upstream_gene_variant	MODIFIER	mtd	intron	mtd	FBgn0013576
B241R57	3R	10813737	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	CG4089	intron	CG14693	FBgn0037837
B241R57	3R	11246889	GT	'G'	AGTGGTTTT	INS	AGTGGTTTT	0.125	strelka	upstream_gene_variant	MODIFIER	CG17734	intergenic	intergenic	intergenic
B241R57	3R	11316146	TA	'T'	AAAATAAAA	INS	AAAATAAAA	0.143	strelka	downstream_gene_variant	MODIFIER	CR45055	intergenic	intergenic	intergenic
B241R57	3R	11568752	T	'TAATGCTAAATGTATATTGTGA'	TTAATAATA	INS	TTAATAATA	0.208	strelka	upstream_gene_variant	MODIFIER	fabp	intergenic	intergenic	intergenic
B241R57	3R	12339225	A	'AT'	GTTTATTTA	INS	TAAATAAAC	0.296	strelka	upstream_gene_variant	MODIFIER	CG44956	exon_2	CR44941	FBgn0266246
B241R57	3R	14697232	CGA	'C'	AACGCGAAA	INS	AACGCGAAA	0.0909	strelka	5_prime_UTR_variant	MODIFIER	Meltrin	5UTR	Meltrin	FBgn0265140
B241R57	3R	21605831	AAG	'A'	TACAAAGAG	INS	TACAAAGAG	0.125	strelka	intron_variant	MODIFIER	InR	intron	InR	FBgn0283499
B241R57	3R	22120442	CA	'C'	GTAACAAAA	INS	GTAACAAAA	0.162	strelka	5_prime_UTR_variant	MODIFIER	CG42390	exon_1	CG42390	FBgn0259736
B241R57	3R	23309803	AAG	'A'	TCGCAAGAG	INS	TCGCAAGAG	0.102	strelka	intron_variant	MODIFIER	pnt	intron	pnt	FBgn0003118
B241R57	3R	23623903	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.259	strelka	intron_variant	MODIFIER	CG31145	intron	CG31145	FBgn0051145
B241R57	3R	25389298	CA	'C'	GTGCCAAAA	INS	GTGCCAAAA	0.0755	strelka	downstream_gene_variant	MODIFIER	CG31437	intron	Fur1	FBgn0004509
B241R57	3R	27077743	A	'ATCAACCAATGTTTCCTACAATT'	TATTATCAT	INS	ATGATAATA	0.207	strelka	intron_variant	MODIFIER	CG14257	intron	CG14257	FBgn0039479
B241R57	3R	28280946	G	'GA'	GGGGGAAAA	INS	TTTTCCCCC	0.0909	strelka	upstream_gene_variant	MODIFIER	CG34436	intergenic	intergenic	intergenic
B241R57	3R	28553940	G	'GA'	AAAAGAAAA	INS	TTTTCTTTT	0.154	strelka	intergenic_region	MODIFIER	CG12413-fkh	intergenic	intergenic	intergenic
B241R57	3R	30590968	A	'AAAGATCGGGGGACG'	GGCCATTCC	INS	GGAATGGCC	0.348	strelka	upstream_gene_variant	MODIFIER	CG9717	intergenic	intergenic	intergenic
B241R57	X	1076276	G	'GCA'	TTGAGCACT	INS	AGTGCTCAA	0.118	mutect2	frameshift_variant	HIGH	CG3655	exon	CG3655	FBgn0040397
B241R57	X	2742206	GT	'G'	AAATGTTTT	INS	AAATGTTTT	0.316	strelka	upstream_gene_variant	MODIFIER	crm	intron	kirre	FBgn0028369
B241R57	X	3105154	GA	'G'	GTGCGAAAA	INS	GTGCGAAAA	0.174	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
B241R57	X	3296178	GA	'G'	AACCGAAAA	INS	AACCGAAAA	0.214	strelka	intron_variant	MODIFIER	dnc	intron	dnc	FBgn0000479
B241R57	X	4590012	TAC	'T'	GGCTTACAC	INS	GGCTTACAC	0.3	strelka	intron_variant	MODIFIER	CR32773	ncRNA	CR32773	FBgn0052773
B241R57	X	4853063	TTC	'T'	ATTTTTCTC	INS	ATTTTTCTC	0.211	strelka	intron_variant	MODIFIER	CG42594	intron	CG42594	FBgn0260971
B241R57	X	5194085	ATG	'A'	GGGTATGTG	INS	GGGTATGTG	0.125	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
B241R57	X	6144759	TA	'T'	CAGCTAAAA	INS	CAGCTAAAA	0.333	strelka	intron_variant	MODIFIER	Ca-alpha1T	intron	Ca-alpha1T	FBgn0264386
B241R57	X	6932960	GCA	'G'	TTGTGCACA	INS	TTGTGCACA	0.2	strelka	intron_variant	MODIFIER	CG14431	intron	CG14431	FBgn0029922
B241R57	X	7426479	G	'GA'	CACTGAAAA	INS	TTTTCAGTG	0.238	strelka	upstream_gene_variant	MODIFIER	CG15036	intergenic	intergenic	intergenic
B241R57	X	7911742	CA	'C'	ATACCAAAA	INS	ATACCAAAA	0.375	strelka	3_prime_UTR_variant	MODIFIER	CG1444	3UTR	CG1444	FBgn0029975
B241R57	X	8347239	GCA	'G'	ACCCGCACA	INS	ACCCGCACA	0.2	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
B241R57	X	9166043	AGT	'A'	CATCAGTGT	INS	CATCAGTGT	0.235	strelka	5_prime_UTR_variant	MODIFIER	mei-P26	exon_1	mei-P26	FBgn0026206
B241R57	X	9807849	CTG	'C'	GCGTCTGTG	INS	GCGTCTGTG	0.133	strelka	intron_variant	MODIFIER	CG32698	intron	CG32698	FBgn0052698
B241R57	X	10553464	GA	'G'	CATCGAAAA	INS	CATCGAAAA	0.179	strelka	intron_variant	MODIFIER	spri	intron	spri	FBgn0085443
B241R57	X	10756586	TA	'T'	TAAATAAAA	INS	TAAATAAAA	0.174	strelka	downstream_gene_variant	MODIFIER	Tango5	intron	Rph	FBgn0030230
B241R57	X	11276205	A	'AT'	TATTATTTT	INS	AAAATAATA	0.235	strelka	intron_variant	MODIFIER	CG44422	intron	CG44422	FBgn0265595
B241R57	X	12298715	G	'GT'	TGTTGTTTT	INS	AAAACAACA	0.581	mutect2,strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
B241R57	X	13589645	CT	'C'	TTCGCTTTG	INS	TTCGCTTTG	0.158	strelka	downstream_gene_variant	MODIFIER	up	intron	Tango13	FBgn0086674
B241R57	X	14697271	T	'TA'	CCCTTACAA	INS	CCCTTACAA	0.25	strelka	intron_variant	MODIFIER	NetB	intron	NetB	FBgn0015774
B241R57	X	15111222	CGCA	'C'	CAGCCGCAG	INS	CAGCCGCAG	0.138	strelka	disruptive_inframe_deletion	MODERATE	Rab3-GEF	exon	Rab3-GEF	FBgn0030613
B241R57	X	16123677	GTATTA	'G'	TGCGGTATT	INS	TGCGGTATT	0.118	mutect2	intron_variant	MODIFIER	disco-r	intron	disco-r	FBgn0042650
B241R57	X	17841285	A	'AT'	ATCAATTTT	INS	AAAATTGAT	0.2	strelka	3_prime_UTR_variant	MODIFIER	CG6398	3UTR	CG6398	FBgn0030870
B241R57	X	18452147	AAC	'A'	AAGAAACAC	INS	AAGAAACAC	0.136	strelka	intron_variant	MODIFIER	CG32547	intron	CG32547	FBgn0052547
B241R57	X	20017910	CGT	'C'	CGCTCGTGT	INS	CGCTCGTGT	0.25	strelka	upstream_gene_variant	MODIFIER	Dop2R	intron	Dop2R	FBgn0053517
B241R57	X	20159111	ACT	'A'	GCTTACTCT	INS	GCTTACTCT	0.188	strelka	5_prime_UTR_variant	MODIFIER	Rab35	5UTR	Rab35	FBgn0031090
B241R57	X	21056810	A	'ACT'	TCTCACTCT	INS	AGAGTGAGA	0.438	mutect2,strelka	upstream_gene_variant	MODIFIER	CG1518	intron	bves	FBgn0031150
B241R57	X	22925433	AGCTTTCATC	'A'	AAAGAGCTT	INS	AAAGAGCTT	0.3	strelka	intergenic_region	MODIFIER	CR41352-CG41106	intergenic	intergenic	intergenic
B241R57	X	23263827	CA	'C'	CTGACAAAA	INS	CTGACAAAA	0.267	strelka	upstream_gene_variant	MODIFIER	28SrRNA-Psi:CR41609	intergenic	intergenic	intergenic
B241R59	211000022278498	13020	T	'TAAGA'		INS		0.261	strelka	downstream_gene_variant	MODIFIER	CR42195	intergenic	intergenic	intergenic
B241R59	211000022278498	13021	GGTCCTCC	'G'		INS		0.286	strelka	downstream_gene_variant	MODIFIER	CR42195	intergenic	intergenic	intergenic
B241R59	2L	490739	T	'TCC'	TCTCTCTCT	INS	TCTCTCTCT	0	consensus	5_prime_UTR_variant	MODIFIER	ush	5UTR	ush	FBgn0003963
B241R59	2L	490744	CCCTA	'C'	CTCTCCCTA	INS	CTCTCCCTA	0	consensus	5_prime_UTR_variant	MODIFIER	ush	5UTR	ush	FBgn0003963
B241R59	2L	1556684	A	'AAC'	AACAAAAAA	INS	TTTTTTGTT	0.143	strelka	5_prime_UTR_variant	MODIFIER	haf	exon_2	haf	FBgn0261509
B241R59	2L	3394889	C	'CTTTCCCTAGAA'	TGATCTTTT	INS	TGATCTTTT	0.136	strelka	upstream_gene_variant	MODIFIER	CG34175	intergenic	intergenic	intergenic
B241R59	2L	4421154	A	'AATGAAGAGCAAATGAATAT'	GCGAAATTA	INS	TAATTTCGC	0.222	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31963	intron	CG15431	FBgn0031602
B241R59	2L	4679959	TC	'T'	CTTTTCTAT	INS	CTTTTCTAT	0.286	strelka	upstream_gene_variant	MODIFIER	CG11929	intergenic	intergenic	intergenic
B241R59	2L	7402636	GT	'G'	GGGTGTCAC	INS	GGGTGTCAC	0.185	strelka	upstream_gene_variant	MODIFIER	CG5160	intron	CG5171	FBgn0031907
B241R59	2L	17474917	G	'GA'	CTAGGGGTT	INS	AACCCCTAG	0.12	strelka	3_prime_UTR_variant	MODIFIER	Aac11	3UTR	Aac11	FBgn0027885
B241R59	2L	17973171	ACAG	'A'	AGCAACAGC	INS	AGCAACAGC	0.107	strelka	disruptive_inframe_deletion	MODERATE	CG5674	exon	CG5674	FBgn0032656
B241R59	2L	19625440	TA	'T'	TAGCTAAAA	INS	TAGCTAAAA	0.259	strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
B241R59	2L	20776635	CACAGTCTGGATATTTTCCAT	'C'	CATCCACAG	INS	CATCCACAG	0.235	strelka	intron_variant	MODIFIER	cad	intron	cad	FBgn0000251
B241R59	2R	5421270	T	'TC'	TAAATAAAA	INS	TAAATAAAA	0.667	strelka	intron_variant	MODIFIER	laccase2	intron	laccase2	FBgn0259247
B241R59	2R	10240868	GT	'G'	CGTTGTTTT	INS	CGTTGTTTT	0.129	strelka	5_prime_UTR_variant	MODIFIER	Hdc	intron	Hdc	FBgn0005619
B241R59	2R	10984707	TAC	'T'	ACCATACAC	INS	ACCATACAC	0.188	strelka	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R59	2R	12246364	T	'TTA'	AATTTTTTT	INS	AATTTTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	CG43244	intergenic	intergenic	intergenic
B241R59	2R	13012959	CAT	'C'	CGCACATAC	INS	CGCACATAC	0.0968	strelka	intergenic_region	MODIFIER	Su(z)2-CG13323	intergenic	intergenic	intergenic
B241R59	2R	13937399	GAT	'G'	ACGGGATTT	INS	ACGGGATTT	0.222	strelka	intron_variant	MODIFIER	shot	intron	shot	FBgn0013733
B241R59	2R	15230698	AGATTGC	'A'	GGGCAGATT	INS	GGGCAGATT	0.4	strelka	intron_variant	MODIFIER	Fs	exon_5	CR44370	FBgn0265508
B241R59	2R	15413559	A	'AC'	GAATACCCA	INS	TGGGTATTC	0.138	mutect2	downstream_gene_variant	MODIFIER	Mtk	intron	CG43729	FBgn0263980
B241R59	2R	16039794	TCA	'T'	ACACTCACA	INS	ACACTCACA	0.185	strelka	intron_variant	MODIFIER	SP2353	intron	SP2353	FBgn0034070
B241R59	2R	17166245	GCGGGGGCGGGCTGGTAGA	'G'	CGGAGCGGG	INS	CGGAGCGGG	0	consensus	disruptive_inframe_deletion	MODERATE	CG10953	exon	CG10953	FBgn0034204
B241R59	2R	18880711	GT	'G'	CAAAGTTTT	INS	CAAAGTTTT	0.148	strelka	intron_variant	MODIFIER	sano	intron	sano	FBgn0034408
B241R59	2R	22478189	TG	'T'	TAGATGCTT	INS	TAGATGCTT	0.364	strelka	upstream_gene_variant	MODIFIER	CG45062	intergenic	intergenic	intergenic
B241R59	2R	22478191	C	'CTTCT'	GATGCTTGC	INS	GATGCTTGC	0.364	strelka	upstream_gene_variant	MODIFIER	CG45062	intergenic	intergenic	intergenic
B241R59	3L	293705	C	'CA'	GCCACAAAA	INS	GCCACAAAA	0.16	strelka	upstream_gene_variant	MODIFIER	RhoGEF3	intron	RhoGEF3	FBgn0264707
B241R59	3L	1138234	AAC	'A'	CACCAACAC	INS	CACCAACAC	0.103	strelka	downstream_gene_variant	MODIFIER	bab2	intergenic	intergenic	intergenic
B241R59	3L	2920114	GAGC	'G'	GGCAGAGCA	INS	GGCAGAGCA	0.0816	strelka	upstream_gene_variant	MODIFIER	CG9970	intron	Shab	FBgn0262593
B241R59	3L	5955147	AAGC	'A'	GAACAAGCA	INS	GAACAAGCA	0.129	strelka	upstream_gene_variant	MODIFIER	CG33993	intergenic	intergenic	intergenic
B241R59	3L	7167191	CT	'C'	ATCTCTTCA	INS	ATCTCTTCA	0.0769	mutect2	downstream_gene_variant	MODIFIER	Dscam2	intron	Dscam2	FBgn0265296
B241R59	3L	9906050	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.139	strelka	upstream_gene_variant	MODIFIER	CG34356	intergenic	intergenic	intergenic
B241R59	3L	9921496	GAGAGAA	'G'	GAGAGAGAG	INS	GAGAGAGAG	0.108	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
B241R59	3L	10386274	ATGG	'A'	ATCGATGGT	INS	ATCGATGGT	0.1	mutect2	upstream_gene_variant	MODIFIER	CR45245	intergenic	intergenic	intergenic
B241R59	3L	10386280	G	'GA'	GGTAGAAAA	INS	TTTTCTACC	0.0476	mutect2	upstream_gene_variant	MODIFIER	CR45245	intergenic	intergenic	intergenic
B241R59	3L	10475728	CAG	'C'	CCCACAGCC	INS	CCCACAGCC	0.217	strelka	intergenic_region	MODIFIER	S-Lap3-A2bp1	intergenic	intergenic	intergenic
B241R59	3L	10542462	T	'TGCCA'	TTTTTTTTT	INS	TTTTTTTTT	0.364	strelka	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
B241R59	3L	11010468	CGA	'C'	TGCACGAGA	INS	TGCACGAGA	0.125	strelka	upstream_gene_variant	MODIFIER	klu	intergenic	intergenic	intergenic
B241R59	3L	11115512	TCTG	'T'	AGTGTCTGC	INS	AGTGTCTGC	0.114	strelka	conservative_inframe_deletion	MODERATE	fd68A	exon_8	FoxK	FBgn0036134
B241R59	3L	11167846	GA	'G'	AATTGAAAA	INS	AATTGAAAA	0.2	strelka	frameshift_variant	HIGH	wls	exon_2	wls	FBgn0036141
B241R59	3L	15762899	TAAATA	'T'	AAAATAAAT	INS	AAAATAAAT	0	consensus	intergenic_region	MODIFIER	CR45240-CG6244	intergenic	intergenic	intergenic
B241R59	3L	15894047	GAC	'G'	GAACGACAC	INS	GAACGACAC	0.154	strelka	intron_variant	MODIFIER	pHCl	intron	pHCl	FBgn0264908
B241R59	3L	17470670	C	'CA'	ATTGCAAAA	INS	ATTGCAAAA	0.19	strelka	5_prime_UTR_variant	MODIFIER	CG7589	5UTR	CG7589	FBgn0036727
B241R59	3R	4308249	GT	'G'	TTACGTTTT	INS	TTACGTTTT	0.259	strelka	upstream_gene_variant	MODIFIER	CG9791	intron	MP1	FBgn0027930
B241R59	3R	4661490	TA	'T'	AATCTAAAA	INS	AATCTAAAA	0.179	strelka	upstream_gene_variant	MODIFIER	CR44156	intron	CG43427	FBgn0263346
B241R59	3R	5158749	AT	'A'	TTCCATTTT	INS	TTCCATTTT	0.135	strelka	upstream_gene_variant	MODIFIER	CG12590	intron	dpr16	FBgn0037295
B241R59	3R	5512251	GGTA	'G'	AGTAGGTAG	INS	AGTAGGTAG	0.087	mutect2	upstream_gene_variant	MODIFIER	Itp-r83A	intron	Nmdar1	FBgn0010399
B241R59	3R	6829547	GA	'G'	AGGCGAAAA	INS	AGGCGAAAA	0.152	strelka	upstream_gene_variant	MODIFIER	CR45901	intron	Scr	FBgn0003339
B241R59	3R	9179921	T	'TAG'	TATGTAGGC	INS	TATGTAGGC	0.35	strelka	downstream_gene_variant	MODIFIER	CG11997	intron	pum	FBgn0003165
B241R59	3R	9179934	G	'GGATA'	CTTAGTGCT	INS	AGCACTAAG	0.368	strelka	downstream_gene_variant	MODIFIER	CG11997	intron	pum	FBgn0003165
B241R59	3R	9179937	CTT	'C'	AGTGCTTAC	INS	AGTGCTTAC	0.368	strelka	downstream_gene_variant	MODIFIER	CG11997	intron	pum	FBgn0003165
B241R59	3R	20140438	AAC	'A'	GGCAAACAC	INS	GGCAAACAC	0.0938	strelka	upstream_gene_variant	MODIFIER	CR42836	intergenic	intergenic	intergenic
B241R59	3R	21618958	CGT	'C'	CGCGCGTGT	INS	CGCGCGTGT	0.143	strelka	5_prime_UTR_variant	MODIFIER	InR	exon_1	InR	FBgn0283499
B241R59	3R	22645670	GTTT	'G'	ATCAGTTTT	INS	ATCAGTTTT	0.304	strelka	intron_variant	MODIFIER	wake	intron	wake	FBgn0266418
B241R59	3R	23694884	A	'AAATACAAATCTTAAAAAGCGTT'	GTCTAAATA	INS	TATTTAGAC	0.174	strelka	upstream_gene_variant	MODIFIER	CG10254	intron	CG10254	FBgn0027512
B241R59	3R	27478349	A	'AAT'	AATAAATAT	INS	ATATTTATT	0.318	strelka	upstream_gene_variant	MODIFIER	Cyp6a18	intergenic	intergenic	intergenic
B241R59	3R	28626315	C	'CT'	ACTGCTTTT	INS	ACTGCTTTT	0.129	strelka	intron_variant	MODIFIER	CG10011	intron	CG10011	FBgn0039590
B241R59	X	279244	GA	'G'	CAAAGAAAA	INS	CAAAGAAAA	0.188	strelka	5_prime_UTR_variant	MODIFIER	ewg	exon_1	ewg	FBgn0005427
B241R59	X	1826517	CCAT	'C'	ACCACCATC	INS	ACCACCATC	0.15	strelka	upstream_gene_variant	MODIFIER	CG14811	intron	CG42666	FBgn0261548
B241R59	X	2639133	GCA	'G'	AACAGCACA	INS	AACAGCACA	0.222	strelka	upstream_gene_variant	MODIFIER	sgg	intron	sgg	FBgn0003371
B241R59	X	5287196	ATC	'A'	AGCCATCTC	INS	AGCCATCTC	0.25	strelka	intergenic_region	MODIFIER	CG15465-CG42749	intergenic	intergenic	intergenic
B241R59	X	5322705	AT	'A'	GCGAATTTT	INS	GCGAATTTT	0.273	strelka	upstream_gene_variant	MODIFIER	Rnp4F	intergenic	intergenic	intergenic
B241R59	X	8256780	CA	'C'	CTTACAAAA	INS	CTTACAAAA	0.143	strelka	intron_variant	MODIFIER	CG1632	intron	CG1632	FBgn0030027
B241R59	X	11526461	CGT	'C'	CGCTCGTGT	INS	CGCTCGTGT	0.333	strelka	intron_variant	MODIFIER	Drak	intron	Drak	FBgn0052666
B241R59	X	12879976	ACACACAC	'A'	ACCCACACA	INS	ACCCACACA	0	consensus	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
B241R59	X	13304058	CGT	'C'	CGCGCGTGT	INS	CGCGCGTGT	0.176	strelka	upstream_gene_variant	MODIFIER	IP3K2	ncRNA	CR45018	FBgn0266376
B241R59	X	14733901	T	'TG'	ATATTGGGT	INS	ATATTGGGT	0.188	strelka	intron_variant	MODIFIER	NetB	intron	NetB	FBgn0015774
B241R59	X	19754221	CACTT	'C'	CACTCACTT	INS	CACTCACTT	0.087	mutect2	upstream_gene_variant	MODIFIER	Pmp70	intron	Pmp70	FBgn0031069
B241R61	2L	1347320	CA	'C'	TTTCCAAAA	INS	TTTCCAAAA	0.111	strelka	upstream_gene_variant	MODIFIER	CG33922	intergenic	intergenic	intergenic
B241R61	2L	1390180	CT	'C'	CGCCCTTTT	INS	CGCCCTTTT	0.0909	strelka	intron_variant	MODIFIER	lea	intron	robo2	FBgn0002543
B241R61	2L	1798345	C	'CCCTTAGTTT'	TTTACCCTC	INS	TTTACCCTC	0.12	strelka	upstream_gene_variant	MODIFIER	Gr22a	intergenic	intergenic	intergenic
B241R61	2L	2501950	TGTC	'T'	TCAGTGTCA	INS	TCAGTGTCA	0.372	strelka	downstream_gene_variant	MODIFIER	oaf	intergenic	intergenic	intergenic
B241R61	2L	3556909	AGGCGAAGTCTAAGT	'A'	CATAAGGCG	INS	CATAAGGCG	0.172	strelka	intergenic_region	MODIFIER	drm-CR44309	intergenic	intergenic	intergenic
B241R61	2L	4736956	A	'AGG'	TGGAAGGGC	INS	GCCCTTCCA	0.0625	strelka	upstream_gene_variant	MODIFIER	CG15631	intron	CG15630	FBgn0031627
B241R61	2L	5073617	T	'TC'	GATCTATAC	INS	GATCTATAC	0.115	strelka	3_prime_UTR_variant	MODIFIER	pgant5	3UTR	pgant5	FBgn0031681
B241R61	2L	7002686	A	'ATTGATTTGGCTTCGAT'	TCCCAATCG	INS	CGATTGGGA	0.404	strelka	intron_variant	MODIFIER	uif	intron	uif	FBgn0031879
B241R61	2L	8875272	AT	'A'	ATCAATCCC	INS	ATCAATCCC	0.0566	mutect2	intergenic_region	MODIFIER	CR44414-CR44415	intergenic	intergenic	intergenic
B241R61	2L	10618332	CCCCTTCT	'C'	CCCCCCCCT	INS	CCCCCCCCT	0.485	strelka	intron_variant	MODIFIER	Trim9	intron	Trim9	FBgn0051721
B241R61	2L	12437721	AGCCATAT	'A'	AACAAGCCA	INS	AACAAGCCA	0.167	strelka	upstream_gene_variant	MODIFIER	SC35	intron	Elf	FBgn0020443
B241R61	2L	13592203	GGCA	'G'	ATGAGGCAG	INS	ATGAGGCAG	0.0541	strelka	downstream_gene_variant	MODIFIER	CG9254	intron	kuz	FBgn0259984
B241R61	2L	13614611	GCA	'G'	TTTGGCACA	INS	TTTGGCACA	0.0645	mutect2	downstream_gene_variant	MODIFIER	mir-2489	intron	kuz	FBgn0259984
B241R61	2L	14370080	AT	'A'	TAAAATTTT	INS	TAAAATTTT	0.111	strelka	downstream_gene_variant	MODIFIER	spel1	intergenic	intergenic	intergenic
B241R61	2L	14710188	TA	'T'	AGTATAAAA	INS	AGTATAAAA	0.178	strelka	upstream_gene_variant	MODIFIER	CG15282	intergenic	intergenic	intergenic
B241R61	2L	15902895	AT	'A'	CATCATTTT	INS	CATCATTTT	0.457	mutect2,strelka	upstream_gene_variant	MODIFIER	CG31823	intergenic	intergenic	intergenic
B241R61	2L	16025003	A	'AT'	GCTCATTTT	INS	AAAATGAGC	0.0649	strelka	intron_variant	MODIFIER	beat-Ic	intron	beat-Ic	FBgn0028644
B241R61	2L	16133256	GT	'G'	GATAGTTTT	INS	GATAGTTTT	0.2	strelka	upstream_gene_variant	MODIFIER	CG4892	intergenic	intergenic	intergenic
B241R61	2L	20851850	C	'CTTACACACAT'	ACTACATAT	INS	ACTACATAT	0.25	strelka	upstream_gene_variant	MODIFIER	CR44307	intergenic	intergenic	intergenic
B241R61	2L	23161931	T	'TA'	TATTTTTTT	INS	TATTTTTTT	0.176	strelka	3_prime_UTR_variant	MODIFIER	CG12567	3UTR	CG12567	FBgn0039958
B241R61	2R	5086575	C	'CTTAA'	AAACCCCTT	INS	AAACCCCTT	0.114	strelka	upstream_gene_variant	MODIFIER	CR43360	intergenic	intergenic	intergenic
B241R61	2R	8149322	GCTGGCACACTGATCTGATAGATCTGATAAA	'G'	TGACGCTGG	INS	TGACGCTGG	0.274	mutect2,strelka	5_prime_UTR_variant	MODIFIER	kermit	exon_1	kermit	FBgn0010504
B241R61	2R	11051113	TA	'T'	TGTGTATGT	INS	TGTGTATGT	0.0444	mutect2	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
B241R61	2R	11083589	TG	'T'	GTGCTGGGG	INS	GTGCTGGGG	0.162	strelka	upstream_gene_variant	MODIFIER	CG43188	intron	luna	FBgn0040765
B241R61	2R	18355233	G	'GA'	ACACGAATA	INS	TATTCGTGT	0.35	strelka	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
B241R61	2R	19192152	TATG	'T'	ATGATATGA	INS	ATGATATGA	0	consensus	intron_variant	MODIFIER	hppy	intron	hppy	FBgn0263395
B241R61	2R	22213844	A	'AGAAAAAGTTTACCTCTTAT'	GGCGAGAAA	INS	TTTCTCGCC	0.179	strelka	upstream_gene_variant	MODIFIER	CG3264	intron	ari-2	FBgn0025186
B241R61	2R	23765837	T	'TGTGTGA'	TGTGTGAAA	INS	TGTGTGAAA	0.259	strelka	intron_variant	MODIFIER	CG9850	intron	CG9850	FBgn0034903
B241R61	3L	950502	C	'CACACACACACAA'	TCAGCACAC	INS	TCAGCACAC	0.1	strelka	intron_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
B241R61	3L	4531311	GT	'G'	TGGTGTTTT	INS	TGGTGTTTT	0.0769	strelka	upstream_gene_variant	MODIFIER	CG11353	intron	Tie	FBgn0014073
B241R61	3L	7624681	AGC	'A'	CAGCAGCAA	INS	CAGCAGCAA	0	consensus	frameshift_variant	HIGH	CG33275	exon_6	Pura	FBgn0035802
B241R61	3L	7624684	AACAGCAG	'A'	CAGCAACAG	INS	CAGCAACAG	0	consensus	frameshift_variant	HIGH	CG33275	exon_6	Pura	FBgn0035802
B241R61	3L	9357927	C	'CA'	ATAGCAAAA	INS	ATAGCAAAA	0.121	strelka	upstream_gene_variant	MODIFIER	UGP	intron	UGP	FBgn0035978
B241R61	3L	10642667	TCACTGAAATCTAA	'T'	CTTTTCACT	INS	CTTTTCACT	0.211	strelka	upstream_gene_variant	MODIFIER	E(z)	intron	CG14154	FBgn0036093
B241R61	3L	10664443	A	'ACGTTT'	TTCAATAGT	INS	ACTATTGAA	0.217	strelka	upstream_gene_variant	MODIFIER	CG32066	intergenic	intergenic	intergenic
B241R61	3L	13829394	GCA	'G'	ATTGGCACA	INS	ATTGGCACA	0.0615	strelka	intergenic_region	MODIFIER	bru-3-CG43184	intergenic	intergenic	intergenic
B241R61	3L	13980968	CGT	'C'	TGTTCGTGT	INS	TGTTCGTGT	0.0784	strelka	downstream_gene_variant	MODIFIER	Hsc70-1	intron	CG17364	FBgn0036391
B241R61	3L	15830543	TC	'T'	TGTCTCTCT	INS	TGTCTCTCT	0.0465	mutect2	3_prime_UTR_variant	MODIFIER	dbo	3UTR	dbo	FBgn0040230
B241R61	3L	16978202	TTC	'T'	TTTTTTCCT	INS	TTTTTTCCT	0.135	mutect2	intron_variant	MODIFIER	Exn	intron	Exn	FBgn0261547
B241R61	3L	19467222	T	'TGAAAATG'	AAAGTGCAA	INS	AAAGTGCAA	0.205	strelka	upstream_gene_variant	MODIFIER	CG14095	intergenic	intergenic	intergenic
B241R61	3L	19918384	AT	'A'	CTGGATTTT	INS	CTGGATTTT	0.16	strelka	3_prime_UTR_variant	MODIFIER	Su(z)12	3UTR	Su(z)12	FBgn0020887
B241R61	3L	21397521	C	'CA'	AAGCCAAAA	INS	AAGCCAAAA	0.105	strelka	upstream_gene_variant	MODIFIER	CR45953	intron	rgn	FBgn0261258
B241R61	3L	23395988	T	'TA'	TGATTAAAA	INS	TGATTAAAA	0.179	strelka	intergenic_region	MODIFIER	CG32230-AGO3	intergenic	intergenic	intergenic
B241R61	3R	1648687	A	'AT'	TACGATTTT	INS	AAAATCGTA	0.0769	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
B241R61	3R	11136409	GAGC	'G'	CCCTGAGCA	INS	CCCTGAGCA	0.136	strelka	upstream_gene_variant	MODIFIER	CG4706	intergenic	intergenic	intergenic
B241R61	3R	12044066	AGCT	'A'	GAGCAGCTG	INS	GAGCAGCTG	0.111	strelka	downstream_gene_variant	MODIFIER	CG14736	intergenic	intergenic	intergenic
B241R61	3R	12098368	G	'GT'	AAATGCCAA	INS	TTGGCATTT	0.0968	strelka	5_prime_UTR_variant	MODIFIER	dpr17	exon_1	dpr17	FBgn0051361
B241R61	3R	15647612	C	'CT'	CTTCCTTTT	INS	CTTCCTTTT	0.114	strelka	intergenic_region	MODIFIER	CG43336-pxb	intergenic	intergenic	intergenic
B241R61	3R	16288055	GA	'G'	TGGCGAAAA	INS	TGGCGAAAA	0.128	strelka	upstream_gene_variant	MODIFIER	gish	intron	gish	FBgn0250823
B241R61	3R	19103532	T	'TA'	TATATATAG	INS	TATATATAG	0.213	strelka	intron_variant	MODIFIER	CG6040	intron	CG6040	FBgn0038679
B241R61	3R	19330293	AT	'A'	GTGAATTTT	INS	GTGAATTTT	0.0562	strelka	upstream_gene_variant	MODIFIER	Dl	exon_3	CR43258	FBgn0262903
B241R61	3R	23827181	GCA	'G'	GGGAGCACA	INS	GGGAGCACA	0.109	strelka	upstream_gene_variant	MODIFIER	CR43285	intron	CG34355	FBgn0085384
B241R61	3R	24371888	CGAG	'C'	CACTCGAGG	INS	CACTCGAGG	0.082	strelka	disruptive_inframe_deletion	MODERATE	CG17782	exon_2	CG17782	FBgn0039195
B241R61	3R	24470278	CA	'C'	TTTTCAAAA	INS	TTTTCAAAA	0.0685	strelka	3_prime_UTR_variant	MODIFIER	CG31128	3UTR	CG31128	FBgn0051128
B241R61	3R	25695114	AAC	'A'	CGCGAACAC	INS	CGCGAACAC	0.0741	strelka	downstream_gene_variant	MODIFIER	LpR2	intergenic	intergenic	intergenic
B241R61	3R	26335760	T	'TGGTCTCTG'	CGCTTGATT	INS	CGCTTGATT	0.179	strelka	intron_variant	MODIFIER	CG33970	intron	CG33970	FBgn0053970
B241R61	3R	27439846	ACT	'A'	TGCCACTGT	INS	TGCCACTGT	0.0563	mutect2	upstream_gene_variant	MODIFIER	side	intron	CG44290	FBgn0265317
B241R61	3R	27892741	GT	'G'	GCCAGTTTT	INS	GCCAGTTTT	0.104	strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
B241R61	3R	28467577	CA	'C'	ACAGCAAAA	INS	ACAGCAAAA	0.1	strelka	intron_variant	MODIFIER	beat-VI	intron	beat-VI	FBgn0039584
B241R61	3R	29007531	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.171	strelka	downstream_gene_variant	MODIFIER	mir-4947	intron	wat	FBgn0039620
B241R61	4	155608	GT	'G'	TGTTGTTTT	INS	TGTTGTTTT	0.109	strelka	downstream_gene_variant	MODIFIER	CG32006	intron	CG31997	FBgn0051997
B241R61	X	401316	GT	'G'	TGTTGTTTT	INS	TGTTGTTTT	0.133	strelka	downstream_gene_variant	MODIFIER	sc	intron	CG32816	FBgn0052816
B241R61	X	1945102	C	'CA'	ACAACAAAA	INS	ACAACAAAA	0.119	strelka	downstream_gene_variant	MODIFIER	CG3587	intron	Hr4	FBgn0264562
B241R61	X	2685701	GT	'G'	CTTCGTTTT	INS	CTTCGTTTT	0.189	strelka	5_prime_UTR_variant	MODIFIER	per	exon_1	per	FBgn0003068
B241R61	X	2969192	AAATG	'A'	GAATAAATG	INS	GAATAAATG	0.15	strelka	intron_variant	MODIFIER	kirre	intron	rst	FBgn0003285
B241R61	X	3034064	G	'GT'	CCTTGTTTT	INS	AAAACAAGG	0.154	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
B241R61	X	3994926	AC	'A'	AAAAACAAA	INS	AAAAACAAA	0	consensus	intergenic_region	MODIFIER	CR45481-CR43298	intergenic	intergenic	intergenic
B241R61	X	3994929	AAATAC	'A'	AACAAAATA	INS	AACAAAATA	0	consensus	intergenic_region	MODIFIER	CR45481-CR43298	intergenic	intergenic	intergenic
B241R61	X	4297692	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.133	strelka	downstream_gene_variant	MODIFIER	CG12692	intergenic	intergenic	intergenic
B241R61	X	6144759	TA	'T'	CAGCTAAAA	INS	CAGCTAAAA	0.222	strelka	intron_variant	MODIFIER	Ca-alpha1T	intron	Ca-alpha1T	FBgn0264386
B241R61	X	7106648	GT	'G'	TTGCGTTTT	INS	TTGCGTTTT	0.222	strelka	3_prime_UTR_variant	MODIFIER	fz4	3UTR	fz4	FBgn0027342
B241R61	X	7573203	AAG	'A'	AATGAAGAG	INS	AATGAAGAG	0.154	strelka	upstream_gene_variant	MODIFIER	CG11369	intergenic	intergenic	intergenic
B241R61	X	7991203	TGA	'T'	AGAGTGAGA	INS	AGAGTGAGA	0.222	strelka	upstream_gene_variant	MODIFIER	Tbh	intergenic	intergenic	intergenic
B241R61	X	8798022	CA	'C'	AATTCAAAA	INS	AATTCAAAA	0.147	strelka	intron_variant	MODIFIER	Lim1	intron	Lim1	FBgn0026411
B241R61	X	9053326	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.156	strelka	3_prime_UTR_variant	MODIFIER	CG42388	3UTR	Nost	FBgn0259734
B241R61	X	9731927	TTG	'T'	TTTTTTGTT	INS	TTTTTTGTT	0.121	strelka	upstream_gene_variant	MODIFIER	CR43498	intron	Sp1	FBgn0020378
B241R61	X	11984280	GT	'G'	AAGAGTTTT	INS	AAGAGTTTT	0.167	strelka	upstream_gene_variant	MODIFIER	cac	intron	cac	FBgn0263111
B241R61	X	12463799	GT	'G'	GCTTGTTTT	INS	GCTTGTTTT	0.211	strelka	5_prime_UTR_variant	MODIFIER	CG42258	5UTR	CG42258	FBgn0259143
B241R61	X	14365864	GCA	'G'	CAGTGCACA	INS	CAGTGCACA	0.16	strelka	intron_variant	MODIFIER	dpr8	intron	dpr8	FBgn0052600
B241R61	X	14889713	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.167	strelka	intron_variant	MODIFIER	Flo2	intron	CG9514	FBgn0030592
B241R61	X	15269983	GT	'G'	GTTGGTTTT	INS	GTTGGTTTT	0.114	strelka	downstream_gene_variant	MODIFIER	CG9106	intergenic	intergenic	intergenic
B241R61	X	15697881	TG	'T'	GGGTTGTCG	INS	GGGTTGTCG	0.222	mutect2	upstream_gene_variant	MODIFIER	CR45524	intron	CG8128	FBgn0030668
B241R61	X	16219174	AT	'A'	CCCCATTTT	INS	CCCCATTTT	0.227	strelka	upstream_gene_variant	MODIFIER	disco	intergenic	intergenic	intergenic
B241R61	X	16556581	G	'GT'	GGTTGGTTT	INS	AAACCAACC	0.143	strelka	3_prime_UTR_variant	MODIFIER	Pp2B-14D	3UTR	Pp2B-14D	FBgn0011826
B241R61	X	16913434	GACA	'G'	ACAAGACAA	INS	ACAAGACAA	0.154	strelka	5_prime_UTR_variant	MODIFIER	CG4928	exon_1	CG4928	FBgn0027556
B241R61	X	17975574	CT	'C'	CTCCCTTTT	INS	CTCCCTTTT	0.143	strelka	intron_variant	MODIFIER	Sh	intron	Sh	FBgn0003380
B241R61	X	18323258	TA	'T'	GCTTTAAAA	INS	GCTTTAAAA	0.192	strelka	3_prime_UTR_variant	MODIFIER	CG6123	exon_6	CG6123	FBgn0030913
B241R61	X	19057172	AT	'A'	AAAAATGTG	INS	AAAAATGTG	0.0909	strelka	downstream_gene_variant	MODIFIER	Diedel3	intron	CG14190	FBgn0030979
B241R61	X	19500623	GT	'G'	TTTCGTTTT	INS	TTTCGTTTT	0.119	strelka	upstream_gene_variant	MODIFIER	CR44340	intron	CG14200	FBgn0031023
B241R61	X	20254576	C	'CT'	TACTCTTTT	INS	TACTCTTTT	0.235	strelka	3_prime_UTR_variant	MODIFIER	Rab10	3UTR	Rab10	FBgn0015789
B241R61	X	20333723	C	'CA'	AGAACAAAA	INS	AGAACAAAA	0.172	strelka	upstream_gene_variant	MODIFIER	CG1504	intergenic	intergenic	intergenic
B241R61	X	22431264	TTTCGATGTAAA	'T'	TCGCTTTCG	INS	TCGCTTTCG	0.0984	strelka	intergenic_region	MODIFIER	CG41562-CG14621	intergenic	intergenic	intergenic
B241R63	2L	734024	CGACGACGAT	'C'	ACGACGACG	INS	ACGACGACG	0.0513	mutect2	downstream_gene_variant	MODIFIER	Hsp60B	intergenic	intergenic	intergenic
B241R63	2L	795414	GTCAACATCTA	'G'	ATACGTCAA	INS	ATACGTCAA	0.222	strelka	upstream_gene_variant	MODIFIER	Pkg21D	intergenic	intergenic	intergenic
B241R63	2L	1283223	CT	'C'	CTTCCTTTT	INS	CTTCCTTTT	0.152	strelka	intron_variant	MODIFIER	robo3	intron	robo3	FBgn0041097
B241R63	2L	4167390	GCA	'G'	CGACGCACA	INS	CGACGCACA	0.16	strelka	upstream_gene_variant	MODIFIER	Or24a	intergenic	intergenic	intergenic
B241R63	2L	4422290	TATGTATGTATTTTACCGGCA	'T'	AAGCTATGT	INS	AAGCTATGT	0.286	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31963	intron	CG15431	FBgn0031602
B241R63	2L	5402570	GA	'G'	CTGGGAAAA	INS	CTGGGAAAA	0.107	strelka	upstream_gene_variant	MODIFIER	H15	intergenic	intergenic	intergenic
B241R63	2L	5711884	C	'CA'	TCCCCAAAA	INS	TCCCCAAAA	0.138	strelka	upstream_gene_variant	MODIFIER	CR44818	intron	CG7236	FBgn0031730
B241R63	2L	6116955	TTG	'T'	CAAATTGTG	INS	CAAATTGTG	0.238	strelka	upstream_gene_variant	MODIFIER	CG31642	intron	stai	FBgn0266521
B241R63	2L	9803997	TTA	'T'	ACTGTTATA	INS	ACTGTTATA	0.136	strelka	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
B241R63	2L	10932066	TTG	'T'	CAATTTGTG	INS	CAATTTGTG	0.143	strelka	upstream_gene_variant	MODIFIER	CG14072	intron	dpr2	FBgn0261871
B241R63	2L	13560183	GT	'G'	TAGGGTTTT	INS	TAGGGTTTT	0.25	strelka	intron_variant	MODIFIER	kuz	intron	kuz	FBgn0259984
B241R63	2L	14906750	CA	'C'	GCGACAAAC	INS	GCGACAAAC	0.107	strelka	downstream_gene_variant	MODIFIER	CG42313	intergenic	intergenic	intergenic
B241R63	2L	15542542	CA	'C'	GCCACAAAA	INS	GCCACAAAA	0.136	strelka	upstream_gene_variant	MODIFIER	Skadu	intergenic	intergenic	intergenic
B241R63	2L	16435525	CGAG	'C'	GGAGCGAGG	INS	GGAGCGAGG	0.211	strelka	intron_variant	MODIFIER	CG5888	intron	CG5888	FBgn0028523
B241R63	2L	20001820	TA	'T'	ATAATAAAA	INS	ATAATAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	CR44908	intron	CG43861	FBgn0264443
B241R63	2R	4777569	GACAAAACCATAGAAAGT	'G'	TATTGACAA	INS	TATTGACAA	0.234	strelka	downstream_gene_variant	MODIFIER	CR43281	intergenic	intergenic	intergenic
B241R63	2R	5426459	CTTG	'C'	GCATCTTGT	INS	GCATCTTGT	0.167	strelka	intron_variant	MODIFIER	laccase2	intron	laccase2	FBgn0259247
B241R63	2R	7743041	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.194	strelka	upstream_gene_variant	MODIFIER	CG30497	intron	CG30497	FBgn0050497
B241R63	2R	7842245	CTCTTGACAAAGTTTCGCAAATTTCCAATTAAGAAT	'C'	GACGCTCTT	INS	GACGCTCTT	0.222	strelka	intron_variant	MODIFIER	Dgk	intron	Dgk	FBgn0085390
B241R63	2R	7995991	CTGCTGCTGT	'C'	GTTGCTGCT	INS	GTTGCTGCT	0.121	mutect2	disruptive_inframe_deletion	MODERATE	Hey	exon	Hey	FBgn0027788
B241R63	2R	16033638	A	'ATT'	AATCAATAT	INS	ATATTGATT	0.19	strelka	downstream_gene_variant	MODIFIER	CG8401	intron	SP2353	FBgn0034070
B241R63	2R	16254023	G	'GA'	CTCGGAAAA	INS	TTTTCCGAG	0.105	strelka	upstream_gene_variant	MODIFIER	CngA	intron	CngA	FBgn0261612
B241R63	2R	18269114	AAC	'A'	AACCAACAC	INS	AACCAACAC	0.167	strelka	intergenic_region	MODIFIER	CR44421-Ote	intergenic	intergenic	intergenic
B241R63	2R	18648900	A	'AGAGTTTTTGTTTTT'	TACCAGAAT	INS	ATTCTGGTA	0.214	strelka	intron_variant	MODIFIER	SP2637	intron	SP2637	FBgn0034371
B241R63	2R	19071407	G	'GT'	TCTGGTCAA	INS	TTGACCAGA	0.308	strelka	intron_variant	MODIFIER	5-HT1A	intron	5-HT1A	FBgn0004168
B241R63	2R	19071412	ATTGTGTTTTTTG	'A'	TCAAATTGT	INS	TCAAATTGT	0.348	strelka	intron_variant	MODIFIER	5-HT1A	intron	5-HT1A	FBgn0004168
B241R63	2R	19071429	ATT	'A'	ATGAATTTC	INS	ATGAATTTC	0.364	strelka	intron_variant	MODIFIER	5-HT1A	intron	5-HT1A	FBgn0004168
B241R63	2R	21057598	ATATT	'A'	AATGATATT	INS	AATGATATT	0.357	strelka	upstream_gene_variant	MODIFIER	shg	intergenic	intergenic	intergenic
B241R63	2R	24752732	G	'GTCCTCCTGC'	GCAGGAGGA	INS	TCCTCCTGC	0.19	strelka	disruptive_inframe_insertion	MODERATE	CG30421	exon_3	Usp15-31	FBgn0050421
B241R63	3L	3525007	G	'GT'	CGTGGTTTG	INS	CAAACCACG	0.118	strelka	upstream_gene_variant	MODIFIER	CR45043	intron	Eip63E	FBgn0005640
B241R63	3L	4086289	G	'GAAA'	GAATGAAAC	INS	GTTTCATTC	0.333	strelka	upstream_gene_variant	MODIFIER	CG14989	intron	Gad1	FBgn0004516
B241R63	3L	5435002	GGT	'G'	TTGAGGTTA	INS	TTGAGGTTA	0.368	strelka	upstream_gene_variant	MODIFIER	CG34391	intron	DIP-delta	FBgn0085420
B241R63	3L	5435006	AGCGT	'A'	GGTTAGCGT	INS	GGTTAGCGT	0.389	strelka	upstream_gene_variant	MODIFIER	CG34391	intron	DIP-delta	FBgn0085420
B241R63	3L	6024661	CA	'C'	GCGCCAAAA	INS	GCGCCAAAA	0.115	strelka	frameshift_variant	HIGH	PVRAP	exon_5	PVRAP	FBgn0052406
B241R63	3L	6921091	CCA	'C'	CATCCCACA	INS	CATCCCACA	0.15	strelka	intergenic_region	MODIFIER	Prat2-CG45413	intergenic	intergenic	intergenic
B241R63	3L	7273962	GA	'G'	ATACGAAAA	INS	ATACGAAAA	0.16	strelka	intron_variant	MODIFIER	unc-13-4A	intron	unc-13-4A	FBgn0035756
B241R63	3L	9198798	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.125	strelka	downstream_gene_variant	MODIFIER	Slc45-1	intergenic	intergenic	intergenic
B241R63	3L	9335772	CGT	'C'	AAAGCGTGA	INS	AAAGCGTGA	0	consensus	upstream_gene_variant	MODIFIER	PGRP-LC	intron	PGRP-LA	FBgn0035975
B241R63	3L	10286410	T	'TGGGGGACCTTTCAGG'	GGGGTACAA	INS	GGGGTACAA	0.25	strelka	downstream_gene_variant	MODIFIER	CR46003	intergenic	intergenic	intergenic
B241R63	3L	11132161	TG	'T'	GTGGTGGAC	INS	GTGGTGGAC	0.16	strelka	frameshift_variant	HIGH	CG32074	exon	CG32074	FBgn0052074
B241R63	3L	11642711	TATAATGCAAACGTTGCGAA	'T'	CGGATATAA	INS	CGGATATAA	0.333	strelka	3_prime_UTR_variant	MODIFIER	CG32091	3UTR	CG32091	FBgn0052091
B241R63	3L	12554042	C	'CA'	ACATCAAAA	INS	ACATCAAAA	0.129	strelka	intron_variant	MODIFIER	sowah	intron	sowah	FBgn0036302
B241R63	3L	12853840	TG	'T'	TTTTTGTTT	INS	TTTTTGTTT	0.192	strelka	5_prime_UTR_variant	MODIFIER	Ent3	5UTR	Ent3	FBgn0036319
B241R63	3L	17441600	GAC	'G'	AACCGACAC	INS	AACCGACAC	0.19	strelka	upstream_gene_variant	MODIFIER	CG18265	intron	CG18265	FBgn0036725
B241R63	3L	17895375	T	'TTCTCTTGGCTG'	TGGTTCATT	INS	TGGTTCATT	0.333	strelka	downstream_gene_variant	MODIFIER	CG7402	intron	Tsp74F	FBgn0036769
B241R63	3L	17895379	T	'TG'	TCATTCTTC	INS	TCATTCTTC	0.294	strelka	downstream_gene_variant	MODIFIER	CG7402	intron	Tsp74F	FBgn0036769
B241R63	3L	27384942	T	'TTTAA'	TATCTTAAA	INS	TATCTTAAA	0.087	mutect2	intron_variant	MODIFIER	Dbp80	intron	Dbp80	FBgn0024804
B241R63	3R	3398937	C	'CT'	CGGTCTTTT	INS	CGGTCTTTT	0.156	strelka	intergenic_region	MODIFIER	spok-Parp	intergenic	intergenic	intergenic
B241R63	3R	6152693	CT	'C'	CTCCCTTTT	INS	CTCCCTTTT	0.105	strelka	intron_variant	MODIFIER	CG31559	intron	CG31559	FBgn0051559
B241R63	3R	8551037	GT	'G'	TAGGGTTTT	INS	TAGGGTTTT	0.125	strelka	upstream_gene_variant	MODIFIER	Or85d	intergenic	intergenic	intergenic
B241R63	3R	10168500	C	'CCCA'	CCTTCAAAA	INS	CCTTCAAAA	0.0385	strelka	downstream_gene_variant	MODIFIER	CG12814	intron	Best1	FBgn0040238
B241R63	3R	10646255	CA	'C'	GCAACAAAA	INS	GCAACAAAA	0.111	strelka	downstream_gene_variant	MODIFIER	CR44018	intergenic	intergenic	intergenic
B241R63	3R	11391777	GA	'G'	TTCCGAAAA	INS	TTCCGAAAA	0.119	strelka	intron_variant	MODIFIER	pros	intron	pros	FBgn0004595
B241R63	3R	14773914	C	'CGT'	AGTGCGTGT	INS	AGTGCGTGT	0.111	strelka	intron_variant	MODIFIER	jvl	intron	jvl	FBgn0263929
B241R63	3R	19261392	C	'CA'	AAGCCAAAA	INS	AAGCCAAAA	0.154	strelka	downstream_gene_variant	MODIFIER	CG14280	intergenic	intergenic	intergenic
B241R63	3R	21872822	C	'CGAAT'	TCACCATAT	INS	TCACCATAT	0.111	strelka	upstream_gene_variant	MODIFIER	CG6569	intron	CG31431	FBgn0051431
B241R63	3R	23004981	GTC	'G'	CTCTGTCTC	INS	CTCTGTCTC	0.114	strelka	intron_variant	MODIFIER	CG34375	intron	CG34375	FBgn0085404
B241R63	3R	23939696	T	'TGA'	GTGGTTTTT	INS	GTGGTTTTT	0.233	strelka	upstream_gene_variant	MODIFIER	Gdh	intron	Gdh	FBgn0001098
B241R63	3R	25858282	T	'TACA'	TTAATATAT	INS	TTAATATAT	0.391	strelka	downstream_gene_variant	MODIFIER	CG5886	intron	CG5890	FBgn0039380
B241R63	3R	25967394	CA	'C'	CCGGCAAAA	INS	CCGGCAAAA	0.105	strelka	upstream_gene_variant	MODIFIER	CG42261	intergenic	intergenic	intergenic
B241R63	3R	26630461	GCAA	'G'	ATCCGCAAC	INS	ATCCGCAAC	0.12	strelka	disruptive_inframe_deletion	MODERATE	TwdlJ	exon	TwdlJ	FBgn0039440
B241R63	3R	26788695	A	'ACTATGTTCTTCGATTC'	GCCCACAAA	INS	TTTGTGGGC	0.167	strelka	upstream_gene_variant	MODIFIER	CG42789	intergenic	intergenic	intergenic
B241R63	3R	27323391	TATG	'T'	GTATTATGA	INS	GTATTATGA	0.133	strelka	upstream_gene_variant	MODIFIER	CG3339	intergenic	intergenic	intergenic
B241R63	3R	29122312	CCT	'C'	TTTCCCTCT	INS	TTTCCCTCT	0.0811	strelka	5_prime_UTR_variant	MODIFIER	yem	5UTR	yem	FBgn0005596
B241R63	3R	29371882	G	'GT'	CAACGTTTT	INS	AAAACGTTG	0.118	strelka	downstream_gene_variant	MODIFIER	CG45546	intergenic	intergenic	intergenic
B241R63	3R	30111896	ACAG	'A'	TGCAACAGC	INS	TGCAACAGC	0.0889	strelka	disruptive_inframe_deletion	MODERATE	sima	exon_5	sima	FBgn0266411
B241R63	3R	30431701	T	'TCTTAA'	ACAATGTTA	INS	ACAATGTTA	0.222	strelka	upstream_gene_variant	MODIFIER	CG2218	intergenic	intergenic	intergenic
B241R63	3R	31190797	CAT	'C'	TACACATAT	INS	TACACATAT	0.19	strelka	upstream_gene_variant	MODIFIER	bnk	intron	mesh	FBgn0051004
B241R63	3R	31791303	A	'AT'	TTATATTTT	INS	AAAATATAA	0.167	strelka	upstream_gene_variant	MODIFIER	Acf1	intron	CG2118	FBgn0039877
B241R63	X	2882908	TTGC	'T'	GCCTTTGCT	INS	GCCTTTGCT	0.214	strelka	disruptive_inframe_deletion	MODERATE	CG14418	exon	CG14418	FBgn0040354
B241R63	X	2914098	GAC	'G'	AGTTGACAC	INS	AGTTGACAC	0.143	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
B241R63	X	3150696	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.25	strelka	intron_variant	MODIFIER	N	intron	N	FBgn0004647
B241R63	X	3680850	TGA	'T'	AGCCTGAGA	INS	AGCCTGAGA	0.143	strelka	intron_variant	MODIFIER	Mnt	intron	Mnt	FBgn0023215
B241R63	X	3905021	CA	'C'	ATTGCAAAA	INS	ATTGCAAAA	0.25	strelka	intron_variant	MODIFIER	CG42541	intron	CG42541	FBgn0260658
B241R63	X	3930705	CA	'C'	CAAACAAAA	INS	CAAACAAAA	0.263	strelka	upstream_gene_variant	MODIFIER	CG42541	intergenic	intergenic	intergenic
B241R63	X	3971634	GT	'G'	ACTTGTTTT	INS	ACTTGTTTT	0.227	strelka	upstream_gene_variant	MODIFIER	CG6428	ncRNA	CR45481	FBgn0267037
B241R63	X	4556280	TTGC	'T'	GATGTTGCT	INS	GATGTTGCT	0.333	strelka	upstream_gene_variant	MODIFIER	CG11436	ncRNA	CR32773	FBgn0052773
B241R63	X	5063570	T	'TAC'	CATATACAC	INS	CATATACAC	0.188	strelka	upstream_gene_variant	MODIFIER	ovo	intron	ovo	FBgn0003028
B241R63	X	6859608	G	'GA'	ATGGGAAAA	INS	TTTTCCCAT	0.545	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45531	intron	CG14434	FBgn0029915
B241R63	X	7391445	TA	'T'	GGTTTAAAA	INS	GGTTTAAAA	0.3	strelka	intron_variant	MODIFIER	CR44357	intron	CG1677	FBgn0029941
B241R63	X	7539453	AT	'A'	TACAATTAC	INS	TACAATTAC	0.12	mutect2	upstream_gene_variant	MODIFIER	CG32720	intron	CG32719	FBgn0052719
B241R63	X	8044610	CGT	'C'	AAAACGTAA	INS	AAAACGTAA	0.125	strelka	downstream_gene_variant	MODIFIER	fs(1)h	intron	fs(1)h	FBgn0004656
B241R63	X	9545965	GTC	'G'	GTGTGTCTC	INS	GTGTGTCTC	0.0909	mutect2	intron_variant	MODIFIER	CG32700	intron	CG32700	FBgn0267253
B241R63	X	9781879	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.16	strelka	3_prime_UTR_variant	MODIFIER	CG1354	3UTR	CG1354	FBgn0030151
B241R63	X	10223196	TCAG	'T'	ACCATCAGC	INS	ACCATCAGC	0.25	strelka	disruptive_inframe_deletion	MODERATE	CG34408	exon_5	CG34408	FBgn0085437
B241R63	X	10575899	GTTGTTT	'G'	TGTTGTTGT	INS	TGTTGTTGT	0.1	mutect2	disruptive_inframe_deletion	MODERATE	spri	exon_3	spri	FBgn0085443
B241R63	X	10934620	G	'GA'	ACCCGAAAA	INS	TTTTCGGGT	0.333	strelka	downstream_gene_variant	MODIFIER	CG2145	intron	Myo10A	FBgn0263705
B241R63	X	11210165	GA	'G'	CATTGAAAA	INS	CATTGAAAA	0.3	strelka	intergenic_region	MODIFIER	CG11106-CG44422	intergenic	intergenic	intergenic
B241R63	X	12845884	C	'CA'	AAAACAAAA	INS	AAAACAAAA	0.25	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
B241R63	X	14095758	GA	'G'	GTGGGAAAA	INS	GTGGGAAAA	0.333	strelka	intergenic_region	MODIFIER	tRNA:S474:12Eh-tRNA:S4:12Ee	intergenic	intergenic	intergenic
B241R63	X	17997330	GAC	'G'	GAGAGACAC	INS	GAGAGACAC	0.208	strelka	upstream_gene_variant	MODIFIER	Sh	intron	Sh	FBgn0003380
B241R63	X	18185222	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.2	strelka	upstream_gene_variant	MODIFIER	Frq2	intron	Frq2	FBgn0083228
B241R63	X	19900273	CA	'C'	TTTACAATC	INS	TTTACAATC	0.158	strelka	intron_variant	MODIFIER	Hers	intron	Hers	FBgn0052529
B241R63	X	20251549	TTG	'T'	GCGTTTGTG	INS	GCGTTTGTG	0.125	strelka	5_prime_UTR_variant	MODIFIER	Rab10	5UTR	Rab10	FBgn0015789
B241R63	X	20728145	TA	'T'	ACCTTAAAA	INS	ACCTTAAAA	0.333	strelka	intergenic_region	MODIFIER	run-CG1324	intergenic	intergenic	intergenic
B241R63	Y	2723237	AAAGGC	'A'	CATTAAAGG	INS	CATTAAAGG	0.25	strelka	intergenic_region	MODIFIER	Su(Ste):CR42424-fdy	intergenic	intergenic	intergenic
D197R01	2L	2046383	AAAC	'A'	CTAAAAACA	INS	CTAAAAACA	0.0519	strelka	upstream_gene_variant	MODIFIER	CR45298	intron	Kebab	FBgn0028952
D197R01	2L	2442444	GA	'G'	ACTGGAAAA	INS	ACTGGAAAA	0.0449	strelka	intron_variant	MODIFIER	dpp	intron	dpp	FBgn0000490
D197R01	2L	2823196	T	'TA'	CCCCTAAAA	INS	CCCCTAAAA	0.0952	strelka	downstream_gene_variant	MODIFIER	CG3123	intron	Duox	FBgn0283531
D197R01	2L	4823981	GA	'G'	GCCGGAAAA	INS	GCCGGAAAA	0.0704	strelka	intron_variant	MODIFIER	CG15628	intron	CG15628	FBgn0031632
D197R01	2L	4908137	CATT	'C'	TGAGCATTA	INS	TGAGCATTA	0.13	strelka	upstream_gene_variant	MODIFIER	CG2837	intergenic	intergenic	intergenic
D197R01	2L	7889242	TA	'T'	CAAGTAAAA	INS	CAAGTAAAA	0.0781	strelka	upstream_gene_variant	MODIFIER	CG7102	intergenic	intergenic	intergenic
D197R01	2L	8592790	TAC	'T'	CTCTTACAC	INS	CTCTTACAC	0.093	strelka	upstream_gene_variant	MODIFIER	CR43855	ncRNA	CR43855	FBgn0264437
D197R01	2L	10797738	C	'CA'	TGGACAAAA	INS	TGGACAAAA	0.188	strelka	downstream_gene_variant	MODIFIER	CR44581	intron	CG31869	FBgn0051869
D197R01	2L	11054857	GA	'G'	GCCCGAAAA	INS	GCCCGAAAA	0.115	strelka	intron_variant	MODIFIER	Samuel	intron	Samuel	FBgn0032330
D197R01	2L	11978793	CA	'C'	GAGACAAAA	INS	GAGACAAAA	0.0641	strelka	upstream_gene_variant	MODIFIER	CG16965	intergenic	intergenic	intergenic
D197R01	2L	12256437	G	'GT'	GCATGTTTT	INS	AAAACATGC	0.25	mutect2,strelka	intron_variant	MODIFIER	aret	intron	bru1	FBgn0000114
D197R01	2L	13272360	CGCA	'C'	CCGCCGCAG	INS	CCGCCGCAG	0.0563	strelka	disruptive_inframe_deletion	MODERATE	CG44085	exon_5	CG44085	FBgn0264894
D197R01	2L	16875364	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.0833	strelka	upstream_gene_variant	MODIFIER	CG31743	ncRNA	CR31781	FBgn0051781
D197R01	2L	19506985	C	'CT'	AAATCCTTT	INS	AAATCCTTT	0.0571	strelka	downstream_gene_variant	MODIFIER	Top3alpha	intron	CG10188	FBgn0032796
D197R01	2R	166415	C	'CGTCAG'	ACATCGTAT	INS	ACATCGTAT	0.0448	mutect2	intergenic_region	MODIFIER	CHR_START-CG45781	intergenic	intergenic	intergenic
D197R01	2R	1760913	G	'GT'	AATTGTTTT	INS	AAAACAATT	0.135	strelka	intron_variant	MODIFIER	CG41520	intron	CG41520	FBgn0087011
D197R01	2R	8829755	G	'GA'	GCCAGAAAA	INS	TTTTCTGGC	0.0702	strelka	downstream_gene_variant	MODIFIER	CG30350	intron	sns	FBgn0024189
D197R01	2R	13499804	AT	'A'	CACCATTTT	INS	CACCATTTT	0.0923	strelka	upstream_gene_variant	MODIFIER	bbc	intron	drk	FBgn0004638
D197R01	2R	14578564	GC	'G'	ATAAGCCCC	INS	ATAAGCCCC	0.0833	mutect2	upstream_gene_variant	MODIFIER	LamC	intron	ttv	FBgn0265974
D197R01	2R	14737660	ACCACGCCCACCGCCAACCGCCCACCCGCCTG	'A'	CTGCACCAC	INS	CTGCACCAC	0.2	strelka	downstream_gene_variant	MODIFIER	CG12858	ncRNA	CR43428	FBgn0263376
D197R01	2R	16179073	G	'GA'	TGAAGAAAA	INS	TTTTCTTCA	0.0833	strelka	upstream_gene_variant	MODIFIER	Ptp52F	intron	Lis-1	FBgn0015754
D197R01	2R	16373936	CT	'C'	AGGCCTTTT	INS	AGGCCTTTT	0.0727	strelka	upstream_gene_variant	MODIFIER	CR45316	intergenic	intergenic	intergenic
D197R01	2R	16480307	GCA	'G'	GTCCGCACA	INS	GTCCGCACA	0.125	strelka	downstream_gene_variant	MODIFIER	CG15712	intergenic	intergenic	intergenic
D197R01	2R	19579026	GT	'G'	ACGGGTTTT	INS	ACGGGTTTT	0.1	strelka	intron_variant	MODIFIER	sm	intron	sm	FBgn0003435
D197R01	2R	20649785	CT	'C'	CTGCCTTTT	INS	CTGCCTTTT	0.105	strelka	downstream_gene_variant	MODIFIER	DMAP1	intron	Lrt	FBgn0034540
D197R01	2R	21239860	GGGA	'G'	AGTGGGGAA	INS	AGTGGGGAA	0.0357	mutect2	intron_variant	MODIFIER	ASPP	intron	ASPP	FBgn0034606
D197R01	2R	21241139	C	'CT'	AAGTCTTCT	INS	AAGTCTTCT	0.12	strelka	intron_variant	MODIFIER	ASPP	intron	ASPP	FBgn0034606
D197R01	2R	21802803	CG	'C'	AATACGGGG	INS	AATACGGGG	0.0541	strelka	upstream_gene_variant	MODIFIER	CG18735	intergenic	intergenic	intergenic
D197R01	2R	25200967	TA	'T'	ATATTAAAA	INS	ATATTAAAA	0.167	strelka	intron_variant	MODIFIER	CG9380	intron	CG9380	FBgn0035094
D197R01	3L	889186	CA	'C'	AGCGCAAAA	INS	AGCGCAAAA	0.0541	mutect2	frameshift_variant	HIGH	CG32479	exon_5	Usp10	FBgn0052479
D197R01	3L	1176310	C	'CA'	CAGCCAAAA	INS	CAGCCAAAA	0.2	strelka	intron_variant	MODIFIER	bab2	intron	bab2	FBgn0025525
D197R01	3L	2412713	TC	'T'	CTTTTCCCC	INS	CTTTTCCCC	0.132	strelka	upstream_gene_variant	MODIFIER	CG45186	intron	CG45186	FBgn0266696
D197R01	3L	3789793	AT	'A'	GCCCATTTT	INS	GCCCATTTT	0.0755	strelka	upstream_gene_variant	MODIFIER	CG32264	intron	CG32264	FBgn0052264
D197R01	3L	5063369	AAG	'A'	AAAAAAGGG	INS	AAAAAAGGG	0.0889	strelka	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
D197R01	3L	5706722	GT	'G'	TGCGGTTTT	INS	TGCGGTTTT	0.0568	strelka	intron_variant	MODIFIER	sif	intron	sif	FBgn0085447
D197R01	3L	6510817	TA	'T'	AAGCTAAAA	INS	AAGCTAAAA	0.0769	strelka	downstream_gene_variant	MODIFIER	CR45979	intron	sfl	FBgn0020251
D197R01	3L	6577566	A	'AT'	AGCCATTTT	INS	AAAATGGCT	0.0976	strelka	intron_variant	MODIFIER	CG18769	intron	jv	FBgn0263973
D197R01	3L	6833992	T	'TTTGTC'	TCTGTCTTT	INS	TCTGTCTTT	0.196	strelka	intergenic_region	MODIFIER	vvl-CR45115	intergenic	intergenic	intergenic
D197R01	3L	6921091	CCA	'C'	CATCCCACA	INS	CATCCCACA	0.156	strelka	intergenic_region	MODIFIER	Prat2-CG45413	intergenic	intergenic	intergenic
D197R01	3L	6962138	GAT	'G'	TATGGATAT	INS	TATGGATAT	0.172	strelka	upstream_gene_variant	MODIFIER	CG10075	intron	sgl	FBgn0261445
D197R01	3L	7109996	T	'TGTCA'	AAATTGTTT	INS	AAATTGTTT	0.0909	strelka	intron_variant	MODIFIER	form3	intron	form3	FBgn0053556
D197R01	3L	10476695	G	'GT'	TTTGGTTTT	INS	AAAACCAAA	0.0617	strelka	upstream_gene_variant	MODIFIER	A2bp1	intergenic	intergenic	intergenic
D197R01	3L	10534927	A	'AAAAG'	ATAAAAAAT	INS	ATTTTTTAT	0.0789	strelka	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
D197R01	3L	13735666	A	'AT'	ACTGATTTT	INS	AAAATCAGT	0.0909	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
D197R01	3L	17464278	A	'AT'	CTCTATTTT	INS	AAAATAGAG	0.0694	strelka	upstream_gene_variant	MODIFIER	CG7603	intergenic	intergenic	intergenic
D197R01	3L	17640817	CT	'C'	TATACTTTT	INS	TATACTTTT	0.121	strelka	downstream_gene_variant	MODIFIER	CG7497	intron	Pep	FBgn0004401
D197R01	3R	1859092	C	'CA'	AATGCAAAA	INS	AATGCAAAA	0.0926	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R01	3R	6445290	AAC	'A'	ATACAACAC	INS	ATACAACAC	0.138	strelka	3_prime_UTR_variant	MODIFIER	gpp	3UTR	gpp	FBgn0264495
D197R01	3R	6896703	G	'GT'	TAAAGATTT	INS	AAATCTTTA	0.0909	strelka	3_prime_UTR_variant	MODIFIER	Antp	3UTR	Antp	FBgn0260642
D197R01	3R	6921820	ATG	'A'	GAATATGTG	INS	GAATATGTG	0.0909	strelka	intron_variant	MODIFIER	Antp	intron	Antp	FBgn0260642
D197R01	3R	9080102	TA	'T'	AGTATAAAA	INS	AGTATAAAA	0.105	strelka	intron_variant	MODIFIER	pum	intron	pum	FBgn0003165
D197R01	3R	9604638	TAC	'T'	ACCATACAC	INS	ACCATACAC	0.1	strelka	intron_variant	MODIFIER	CG8312	intron	CG8312	FBgn0037720
D197R01	3R	10570774	A	'AG'	CGAGAGGGA	INS	TCCCTCTCG	0.0678	strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
D197R01	3R	13089585	A	'AT'	CACTATCAC	INS	GTGATAGTG	0.0482	mutect2	frameshift_variant	HIGH	CG34308	exon	CG34308	FBgn0085337
D197R01	3R	13639204	CT	'C'	ATTTCTTTT	INS	ATTTCTTTT	0.0896	strelka	3_prime_UTR_variant	MODIFIER	sqd	3UTR	sqd	FBgn0263396
D197R01	3R	14577293	GTATTTTA	'G'	GTGTGTATT	INS	GTGTGTATT	0.0909	mutect2,strelka	5_prime_UTR_variant	MODIFIER	stumps	exon_1	stumps	FBgn0020299
D197R01	3R	14949324	A	'ATG'	ACACATGTG	INS	CACATGTGT	0.333	strelka	intergenic_region	MODIFIER	CR45598-CR45599	intergenic	intergenic	intergenic
D197R01	3R	15308236	CA	'C'	TTCCCAAAA	INS	TTCCCAAAA	0.125	strelka	3_prime_UTR_variant	MODIFIER	Tm1	3UTR	Tm1	FBgn0003721
D197R01	3R	16140419	G	'GT'	TTTGGTTTT	INS	AAAACCAAA	0.203	strelka	downstream_gene_variant	MODIFIER	CG5903	intron	Sb	FBgn0003319
D197R01	3R	17172360	G	'GT'	TGTTGTTTT	INS	AAAACAACA	0.109	strelka	intron_variant	MODIFIER	Mur89F	intron	Mur89F	FBgn0038492
D197R01	3R	18261626	AGT	'A'	GGTGAGTGT	INS	GGTGAGTGT	0.121	strelka	downstream_gene_variant	MODIFIER	moi	intergenic	intergenic	intergenic
D197R01	3R	21969343	TA	'T'	ACGGTAAAA	INS	ACGGTAAAA	0.0806	mutect2,strelka	upstream_gene_variant	MODIFIER	Eip93F	intron	Eip93F	FBgn0264490
D197R01	3R	22292255	CA	'C'	GGCCCAAAA	INS	GGCCCAAAA	0.061	strelka	upstream_gene_variant	MODIFIER	mir-1010	intron	SKIP	FBgn0051163
D197R01	3R	23194070	CTTCAA	'C'	TCCTCTTCA	INS	TCCTCTTCA	0.0667	strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
D197R01	3R	23338460	GTGCGAGTGCAACGTAAAAC	'G'	GTGTGTGCG	INS	GTGTGTGCG	0.0506	mutect2	upstream_gene_variant	MODIFIER	CR46090	intron	pnt	FBgn0003118
D197R01	3R	23469734	GT	'G'	CTTCGTTTT	INS	CTTCGTTTT	0.13	strelka	intron_variant	MODIFIER	CG4374	intron	CG4374	FBgn0039078
D197R01	3R	23941751	CA	'C'	GAAGCAAAA	INS	GAAGCAAAA	0.0746	strelka	upstream_gene_variant	MODIFIER	Gdh	intron	Gdh	FBgn0001098
D197R01	3R	27035052	GA	'G'	CAAAGAAAA	INS	CAAAGAAAA	0.0741	strelka	intron_variant	MODIFIER	RYa-R	intron	RYa-R	FBgn0004842
D197R01	3R	28168213	C	'CA'	TTGCCAAAA	INS	TTGCCAAAA	0.0758	strelka	intron_variant	MODIFIER	CG34354	intron	CG34354	FBgn0085383
D197R01	3R	28287793	TGTGC	'T'	CCAGTGTGC	INS	CCAGTGTGC	0.0862	mutect2	upstream_gene_variant	MODIFIER	Mst98Ca	intergenic	intergenic	intergenic
D197R01	3R	28690796	C	'CAG'	ATCGCAGAG	INS	ATCGCAGAG	0.0556	mutect2	intron_variant	MODIFIER	CG9990	intron	CG9990	FBgn0039594
D197R01	4	87692	G	'GT'	TACAGTTTT	INS	AAAACTGTA	0.125	strelka	upstream_gene_variant	MODIFIER	pan	intron	pan	FBgn0085432
D197R01	4	1218656	TACAAACGAA	'T'	GATATACAA	INS	GATATACAA	0	consensus	upstream_gene_variant	MODIFIER	Mitf	intron	Mitf	FBgn0263112
D197R01	4	1218672	TG	'T'	TTGATGATT	INS	TTGATGATT	0	consensus	upstream_gene_variant	MODIFIER	Mitf	intron	Mitf	FBgn0263112
D197R01	X	681366	GCA	'G'	TCTCGCACA	INS	TCTCGCACA	0.182	strelka	intergenic_region	MODIFIER	SkpA-sdk	intergenic	intergenic	intergenic
D197R01	X	1728923	CTATG	'C'	ATATCTATG	INS	ATATCTATG	0.174	strelka	intergenic_region	MODIFIER	CG3795-Scgdelta	intergenic	intergenic	intergenic
D197R01	X	1813739	C	'CT'	TACACTTTT	INS	TACACTTTT	0.109	strelka	intron_variant	MODIFIER	CG42666	intron	CG42666	FBgn0261548
D197R01	X	2361324	CT	'C'	GACGCTTTT	INS	GACGCTTTT	0.152	strelka	intron_variant	MODIFIER	ptr	intron	CG2841	FBgn0003159
D197R01	X	2386161	GT	'G'	TTAGGTTTT	INS	TTAGGTTTT	0.3	strelka	intron_variant	MODIFIER	PsGEF	intron	PsGEF	FBgn0264598
D197R01	X	3191705	TCTCCG	'T'	GTTGTCTCC	INS	GTTGTCTCC	0.143	strelka	intron_variant	MODIFIER	dnc	intron	dnc	FBgn0000479
D197R01	X	3625266	A	'AT'	TCTCATTTT	INS	AAAATGAGA	0.2	strelka	intron_variant	MODIFIER	AstA-R1	intron	AstA-R1	FBgn0266429
D197R01	X	3771415	AATAC	'A'	GGCAAATAC	INS	GGCAAATAC	0.111	strelka	upstream_gene_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
D197R01	X	3899673	GCA	'G'	ACTCGCACA	INS	ACTCGCACA	0.194	strelka	intron_variant	MODIFIER	CG42541	intron	CG42541	FBgn0260658
D197R01	X	4008663	A	'ATGT'	ATATATGTA	INS	TACATATAT	0.13	strelka	intergenic_region	MODIFIER	CR43298-CR45482	intergenic	intergenic	intergenic
D197R01	X	5053035	AAG	'A'	ATGAAAGAG	INS	ATGAAAGAG	0.161	strelka	intron_variant	MODIFIER	CR44833	intron	ovo	FBgn0003028
D197R01	X	5225169	C	'CCA'	ACACCCACA	INS	ACACCCACA	0.176	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
D197R01	X	5486137	GT	'G'	TATGGTTTT	INS	TATGGTTTT	0.174	strelka	intron_variant	MODIFIER	SPR	intron	SPR	FBgn0029768
D197R01	X	5504670	GA	'G'	TATAGAAAA	INS	TATAGAAAA	0.154	strelka	upstream_gene_variant	MODIFIER	CG32762	intergenic	intergenic	intergenic
D197R01	X	5698865	T	'TG'	TTTTTTTAC	INS	TTTTTTTAC	0.115	strelka	5_prime_UTR_variant	MODIFIER	CG4096	exon_1	CG4096	FBgn0029791
D197R01	X	5886441	CT	'C'	TTCACTTTT	INS	TTCACTTTT	0.0952	strelka	downstream_gene_variant	MODIFIER	CG16721	ncRNA	CR45668	FBgn0267228
D197R01	X	6414055	T	'TTCA'	CATCTTTTT	INS	CATCTTTTT	0.174	strelka	downstream_gene_variant	MODIFIER	CG33668	intergenic	intergenic	intergenic
D197R01	X	6539773	G	'GT'	AATTGTTTT	INS	AAAACAATT	0.212	strelka	upstream_gene_variant	MODIFIER	CG34417	intergenic	intergenic	intergenic
D197R01	X	6929154	GCGAAA	'G'	AGAGGCGAA	INS	AGAGGCGAA	0.087	strelka	intron_variant	MODIFIER	CG14431	intron	CG14431	FBgn0029922
D197R01	X	7440141	CA	'C'	GACCCAAAA	INS	GACCCAAAA	0.229	strelka	intergenic_region	MODIFIER	CG32726-CR45533	intergenic	intergenic	intergenic
D197R01	X	8016507	G	'GT'	GAGCGTTTT	INS	AAAACGCTC	0.16	strelka	downstream_gene_variant	MODIFIER	CG15333	intron	Tbh	FBgn0010329
D197R01	X	8366933	C	'CA'	AACGCAAAA	INS	AACGCAAAA	0.16	strelka	5_prime_UTR_variant	MODIFIER	nAChRalpha3	exon_1	nAChRalpha3	FBgn0015519
D197R01	X	8433072	GT	'G'	TTGGGTTTT	INS	TTGGGTTTT	0.3	strelka	upstream_gene_variant	MODIFIER	CG1440	intergenic	intergenic	intergenic
D197R01	X	8891457	TCA	'T'	AGCTTCACA	INS	AGCTTCACA	0.133	strelka	intron_variant	MODIFIER	Moe	intron	Moe	FBgn0011661
D197R01	X	9460685	CT	'C'	CCACCTTTT	INS	CCACCTTTT	0.194	strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
D197R01	X	10520129	AT	'A'	ACACATTTT	INS	ACACATTTT	0.111	strelka	intron_variant	MODIFIER	spri	intron	spri	FBgn0085443
D197R01	X	10680527	A	'AT'	ATTTATTTT	INS	AAAATAAAT	0.227	strelka	intron_variant	MODIFIER	X11Lbeta	intron	X11Lbeta	FBgn0052677
D197R01	X	11043202	AT	'A'	TTCCATTTT	INS	TTCCATTTT	0.125	strelka	upstream_gene_variant	MODIFIER	CG42339	intergenic	intergenic	intergenic
D197R01	X	11326018	AC	'A'	ATCCACCCC	INS	ATCCACCCC	0.174	strelka	upstream_gene_variant	MODIFIER	sisA	intron	CG1657	FBgn0030286
D197R01	X	11629993	AACC	'A'	CCAAAACCA	INS	CCAAAACCA	0.125	strelka	intron_variant	MODIFIER	Ptp10D	intron	Ptp10D	FBgn0004370
D197R01	X	11939617	GCA	'G'	ACCAGCACA	INS	ACCAGCACA	0.143	strelka	intron_variant	MODIFIER	cac	intron	cac	FBgn0263111
D197R01	X	11999170	GT	'G'	TTGTGTTTT	INS	TTGTGTTTT	0.121	strelka	upstream_gene_variant	MODIFIER	fw	intron	fw	FBgn0001083
D197R01	X	12035223	GT	'G'	GCACGTTTT	INS	GCACGTTTT	0.25	strelka	3_prime_UTR_variant	MODIFIER	Cyp318a1	3UTR	Cyp318a1	FBgn0030369
D197R01	X	12130006	ATG	'A'	ATGAATGTG	INS	ATGAATGTG	0.231	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
D197R01	X	12267373	AC	'A'	AAAAACAAA	INS	AAAAACAAA	0.167	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
D197R01	X	12864809	AG	'A'	TGTCAGGGG	INS	TGTCAGGGG	0.1	strelka	intron_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
D197R01	X	12923866	G	'GT'	CGGTGTTTT	INS	AAAACACCG	0.2	strelka	intron_variant	MODIFIER	fne	intron	fne	FBgn0086675
D197R01	X	13371621	G	'GT'	TATTGTTTT	INS	AAAACAATA	0.167	strelka	upstream_gene_variant	MODIFIER	CG1640	intron	CG1640	FBgn0030478
D197R01	X	13389776	C	'CT'	GTTCCTTTT	INS	GTTCCTTTT	0.174	strelka	upstream_gene_variant	MODIFIER	Rbp1-like	intergenic	intergenic	intergenic
D197R01	X	13424244	CA	'C'	TCGCCAAAA	INS	TCGCCAAAA	0.129	strelka	downstream_gene_variant	MODIFIER	Set2	intergenic	intergenic	intergenic
D197R01	X	13504661	AAC	'A'	AACAAACAC	INS	AACAAACAC	0.115	strelka	intron_variant	MODIFIER	Neto	intron	Neto	FBgn0265416
D197R01	X	14021811	GA	'G'	GAAAGAAAA	INS	GAAAGAAAA	0.286	strelka	downstream_gene_variant	MODIFIER	tRNA:R:12Eb	intergenic	intergenic	intergenic
D197R01	X	14145658	T	'TTTC'	TTCTTTTTT	INS	TTCTTTTTT	0.174	strelka	downstream_gene_variant	MODIFIER	CR44658	intergenic	intergenic	intergenic
D197R01	X	15257964	CCAA	'C'	TGCACCAAC	INS	TGCACCAAC	0.129	strelka	intergenic_region	MODIFIER	PPYR1-CG9106	intergenic	intergenic	intergenic
D197R01	X	15276462	CACACACA	'C'	CACACACAC	INS	CACACACAC	0.0909	mutect2	upstream_gene_variant	MODIFIER	CG9106	intergenic	intergenic	intergenic
D197R01	X	15651815	TA	'T'	AGCATAAAA	INS	AGCATAAAA	0.143	strelka	intergenic_region	MODIFIER	CG8117-CR43299	intergenic	intergenic	intergenic
D197R01	X	16573507	AAAAC	'A'	AAACAAAAC	INS	AAACAAAAC	0.25	strelka	upstream_gene_variant	MODIFIER	CanA-14F	intron	CanA-14F	FBgn0267912
D197R01	X	16971604	T	'TA'	CTTTTAAAA	INS	CTTTTAAAA	0.273	strelka	3_prime_UTR_variant	MODIFIER	CG45002	3UTR	CG45002	FBgn0266354
D197R01	X	17047547	CA	'C'	GCCACAAAA	INS	GCCACAAAA	0.118	strelka	intron_variant	MODIFIER	CG45002	intron	CG45002	FBgn0266354
D197R01	X	17396651	GA	'G'	AATCGAAAA	INS	AATCGAAAA	0.1	strelka	upstream_gene_variant	MODIFIER	B-H1	intergenic	intergenic	intergenic
D197R01	X	17724525	T	'TGTTG'	TTGTTTTTT	INS	TTGTTTTTT	0.278	strelka	intron_variant	MODIFIER	CG42684	intron	CG42684	FBgn0261570
D197R01	X	18243318	TTGC	'T'	TCGCTTGCT	INS	TCGCTTGCT	0.0784	strelka	upstream_gene_variant	MODIFIER	upd2	intergenic	intergenic	intergenic
D197R01	X	18250490	TC	'T'	ACATTCCCC	INS	ACATTCCCC	0.105	strelka	intergenic_region	MODIFIER	CR45607-CR45613	intergenic	intergenic	intergenic
D197R01	X	18699397	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.121	strelka	intergenic_region	MODIFIER	Cyp18a1-CCKLR-17D1	intergenic	intergenic	intergenic
D197R01	X	18777386	A	'AT'	ATTTATTTT	INS	AAAATAAAT	0.3	strelka	upstream_gene_variant	MODIFIER	CCKLR-17D3	intron	CG6891	FBgn0030955
D197R01	X	19227583	AAC	'A'	ATATAACTT	INS	ATATAACTT	0.136	strelka	intron_variant	MODIFIER	CG7884	intron	CG7884	FBgn0031001
D197R01	X	19386633	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.12	strelka	intron_variant	MODIFIER	kek5	intron	kek5	FBgn0031016
D197R01	X	20146847	G	'GT'	CTCAGTTTT	INS	AAAACTGAG	0.261	strelka	upstream_gene_variant	MODIFIER	Or19a	intergenic	intergenic	intergenic
D197R01	X	21211892	CA	'C'	TAAACAAAA	INS	TAAACAAAA	0.143	strelka	intron_variant	MODIFIER	CG32521	intron	CG32521	FBgn0052521
D197R01	X	21277770	TA	'T'	AATATAAAA	INS	AATATAAAA	0.19	strelka	intron_variant	MODIFIER	CG32521	intron	CG32521	FBgn0052521
D197R03	2L	150175	GT	'G'	ATAAGTTTT	INS	ATAAGTTTT	0.0556	strelka	upstream_gene_variant	MODIFIER	CG11455	intron	CG42399	FBgn0259818
D197R03	2L	895143	TGTGTGG	'T'	CTCATGTGT	INS	CTCATGTGT	0.0395	mutect2	upstream_gene_variant	MODIFIER	Lsp1beta	intergenic	intergenic	intergenic
D197R03	2L	4856978	ATATG	'A'	ATATATATG	INS	ATATATATG	0.105	strelka	downstream_gene_variant	MODIFIER	Mon1	intron	smog	FBgn0051660
D197R03	2L	4874736	TGTGC	'T'	AGCTTGTGC	INS	AGCTTGTGC	0.0361	mutect2	3_prime_UTR_variant	MODIFIER	pog	3UTR	smog	FBgn0051660
D197R03	2L	5229360	CA	'C'	TCGACAAAA	INS	TCGACAAAA	0.0571	strelka	intron_variant	MODIFIER	tkv	intron	tkv	FBgn0003716
D197R03	2L	6646768	TG	'T'	TTTTTGTTT	INS	TTTTTGTTT	0.102	mutect2	5_prime_UTR_variant	MODIFIER	CG31635	5UTR	CG31635	FBgn0051635
D197R03	2L	7440526	AT	'A'	GTGCATTTT	INS	GTGCATTTT	0.0674	strelka	upstream_gene_variant	MODIFIER	CG5973	intron	CG5973	FBgn0031914
D197R03	2L	8463676	TTGC	'T'	TCCCTTGCT	INS	TCCCTTGCT	0.058	mutect2	5_prime_UTR_variant	MODIFIER	fu12	exon_1	fu12	FBgn0026718
D197R03	2L	8566476	GCTT	'G'	TTCTGCTTC	INS	TTCTGCTTC	0.0476	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31895	intron	Sema-1a	FBgn0011259
D197R03	2L	9727371	TTTG	'T'	TTTTTTTGG	INS	TTTTTTTGG	0.0732	strelka	upstream_gene_variant	MODIFIER	CG13116	intron	Nckx30C	FBgn0028704
D197R03	2L	10824538	GGT	'G'	TTCGGGTTT	INS	TTCGGGTTT	0.0519	strelka	downstream_gene_variant	MODIFIER	CG6508	intron	Nos	FBgn0011676
D197R03	2L	11697978	CCA	'C'	ACACCCACA	INS	ACACCCACA	0.109	strelka	downstream_gene_variant	MODIFIER	CG4988	intergenic	intergenic	intergenic
D197R03	2L	15556306	TA	'T'	TTCATAAAA	INS	TTCATAAAA	0.0814	strelka	downstream_gene_variant	MODIFIER	CG15256	intron	kek3	FBgn0028370
D197R03	2L	18120502	GTAC	'G'	CGTAGTACT	INS	CGTAGTACT	0.107	strelka	upstream_gene_variant	MODIFIER	CG5758	intron	CG5758	FBgn0032666
D197R03	2L	18738201	AT	'A'	GCTGATTTT	INS	GCTGATTTT	0.0794	strelka	upstream_gene_variant	MODIFIER	CG15167	intergenic	intergenic	intergenic
D197R03	2L	20700870	TTC	'T'	TTTTTTCTT	INS	TTTTTTCTT	0.0824	mutect2	intron_variant	MODIFIER	Hr38	intron	Hr38	FBgn0014859
D197R03	2R	5692488	G	'GT'	ATTTGTTTT	INS	AAAACAAAT	0.125	strelka	upstream_gene_variant	MODIFIER	scaf	intergenic	intergenic	intergenic
D197R03	2R	7862195	TCA	'T'	GACGTCACA	INS	GACGTCACA	0.075	strelka	intron_variant	MODIFIER	Dgk	intron	Dgk	FBgn0085390
D197R03	2R	10477543	A	'AT'	TTCAATTTT	INS	AAAATTGAA	0.536	strelka	upstream_gene_variant	MODIFIER	CR45134	intron	whd	FBgn0261862
D197R03	2R	10519433	G	'GGA'	GGATGAAAA	INS	TTTTCATCC	0.0526	strelka	downstream_gene_variant	MODIFIER	lola	intron	lola	FBgn0283521
D197R03	2R	10548465	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.0575	strelka	intergenic_region	MODIFIER	lola-psq	intergenic	intergenic	intergenic
D197R03	2R	12201801	CTGCTGCTTT	'C'	GCTGCTGCT	INS	GCTGCTGCT	0.0517	mutect2	upstream_gene_variant	MODIFIER	CG8858	intergenic	intergenic	intergenic
D197R03	2R	15363252	A	'AC'	GGCAAAAAA	INS	TTTTTTGCC	0.115	strelka	downstream_gene_variant	MODIFIER	Pms2	intron	unc-5	FBgn0034013
D197R03	2R	16001888	AAC	'A'	CACGAACAC	INS	CACGAACAC	0.0822	strelka	5_prime_UTR_variant	MODIFIER	CG8370	5UTR	CG8370	FBgn0034060
D197R03	2R	17271932	AAAC	'A'	CTAAAAACA	INS	CTAAAAACA	0.137	mutect2	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
D197R03	2R	17583961	TTA	'T'	TTTTTTAAA	INS	TTTTTTAAA	0.0577	mutect2	5_prime_UTR_variant	MODIFIER	CG6484	5UTR	CG6484	FBgn0034247
D197R03	2R	17951977	T	'TG'	TTTTTATTT	INS	TTTTTATTT	0.0959	strelka	upstream_gene_variant	MODIFIER	CR44418	intergenic	intergenic	intergenic
D197R03	2R	18643592	CA	'C'	AGCGCAAAA	INS	AGCGCAAAA	0.0811	strelka	upstream_gene_variant	MODIFIER	CG30122	intron	SP2637	FBgn0034371
D197R03	2R	19094998	C	'CA'	ATAGCAAAA	INS	ATAGCAAAA	0.0737	strelka	frameshift_variant	HIGH	Ir56a	exon	Ir56a	FBgn0050125
D197R03	2R	19715640	GT	'G'	CCATGTTTT	INS	CCATGTTTT	0.0909	strelka	upstream_gene_variant	MODIFIER	CR44509	intergenic	intergenic	intergenic
D197R03	2R	19942585	A	'AC'	GGAGAACAA	INS	TTGTTCTCC	0.0678	strelka	upstream_gene_variant	MODIFIER	CR43421	intergenic	intergenic	intergenic
D197R03	2R	20723924	T	'TCC'	CATCTCTCT	INS	CATCTCTCT	0.0563	strelka	downstream_gene_variant	MODIFIER	CR44660	intron	dpr1	FBgn0040726
D197R03	2R	20874628	AAAAG	'A'	AAAAAAAAG	INS	AAAAAAAAG	0.125	mutect2	upstream_gene_variant	MODIFIER	Ipk1	intron	Ipk1	FBgn0050295
D197R03	2R	23087208	G	'GA'	AGCTGAAAA	INS	TTTTCAGCT	0.0556	strelka	5_prime_UTR_variant	MODIFIER	CG13538	5UTR	CG13538	FBgn0034820
D197R03	3L	3965413	A	'AC'	AAAAATGAA	INS	TTCATTTTT	0.125	strelka	upstream_gene_variant	MODIFIER	CG12605	intergenic	intergenic	intergenic
D197R03	3L	4300080	A	'AT'	CTACAATTA	INS	TAATTGTAG	0.296	strelka	upstream_gene_variant	MODIFIER	dyl	intron	dyl	FBgn0066365
D197R03	3L	4581814	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.0658	strelka	intron_variant	MODIFIER	CG42540	intron	CG42540	FBgn0260657
D197R03	3L	6153847	AT	'A'	TAGCATTTT	INS	TAGCATTTT	0.0741	strelka	upstream_gene_variant	MODIFIER	Cpr65Ax2	intergenic	intergenic	intergenic
D197R03	3L	6449539	GA	'G'	TATAGAAAA	INS	TATAGAAAA	0.0735	strelka	intron_variant	MODIFIER	CG42747	intron	CG42747	FBgn0261801
D197R03	3L	7554403	G	'GT'	TGCCGTTTT	INS	AAAACGGCA	0.0632	strelka	downstream_gene_variant	MODIFIER	CG14837	intergenic	intergenic	intergenic
D197R03	3L	7860095	A	'ACCGCCTC'	ACCCACCGC	INS	GCGGTGGGT	0.13	strelka	upstream_gene_variant	MODIFIER	Pdp1	intron	Pdp1	FBgn0016694
D197R03	3L	8847878	TG	'T'	TTTTTGTTG	INS	TTTTTGTTG	0.0595	mutect2	upstream_gene_variant	MODIFIER	CR45823	intron	dally	FBgn0263930
D197R03	3L	9830599	GT	'G'	TAACGTTTT	INS	TAACGTTTT	0.0769	strelka	downstream_gene_variant	MODIFIER	I-2	intron	CG43897	FBgn0264489
D197R03	3L	10029130	GA	'G'	TTCGGAAAA	INS	TTCGGAAAA	0.0816	strelka	downstream_gene_variant	MODIFIER	CR45155	intron	dpr6	FBgn0040823
D197R03	3L	10297968	CA	'C'	TGGCCAAAA	INS	TGGCCAAAA	0.0769	strelka	non_coding_transcript_exon_variant	MODIFIER	CR46003	exon_1	CR46003	FBgn0267665
D197R03	3L	10542774	G	'GT'	CCCGGTTTT	INS	AAAACCGGG	0.103	strelka	intron_variant	MODIFIER	A2bp1	intron	Rbfox1	FBgn0052062
D197R03	3L	10561060	C	'CA'	AAAGCAAAA	INS	AAAGCAAAA	0.0485	strelka	upstream_gene_variant	MODIFIER	CG6527	intron	Rbfox1	FBgn0052062
D197R03	3L	11527619	GGTT	'G'	ATGCGGTTG	INS	ATGCGGTTG	0.0588	strelka	disruptive_inframe_deletion	MODERATE	Mob2	exon_2	Mob2	FBgn0259481
D197R03	3L	15563937	GA	'G'	ACAAGAAAA	INS	ACAAGAAAA	0.069	strelka	upstream_gene_variant	MODIFIER	CG7739	intron	SCCRO	FBgn0036510
D197R03	3L	15737670	TGC	'T'	TGTGTGCGT	INS	TGTGTGCGT	0.0556	mutect2	intergenic_region	MODIFIER	comm-CR45240	intergenic	intergenic	intergenic
D197R03	3L	18352197	GA	'G'	GGACGAAAA	INS	GGACGAAAA	0.0926	mutect2,strelka	intergenic_region	MODIFIER	grim-rpr	intergenic	intergenic	intergenic
D197R03	3L	21143438	CA	'C'	TCACCAAAA	INS	TCACCAAAA	0.0769	mutect2	intron_variant	MODIFIER	Ac78C	intron	Ac78C	FBgn0024150
D197R03	3L	21938761	G	'GA'	ATTTGAAAA	INS	TTTTCAAAT	0.156	strelka	3_prime_UTR_variant	MODIFIER	DNApol-eta	3UTR	DNApol-eta	FBgn0037141
D197R03	3L	22098335	C	'CA'	TGCCCAAAA	INS	TGCCCAAAA	0.104	strelka	intergenic_region	MODIFIER	msopa-CR45236	intergenic	intergenic	intergenic
D197R03	3L	22238357	AT	'A'	CGCCATTTT	INS	CGCCATTTT	0.0476	strelka	intron_variant	MODIFIER	olf413	intron	olf413	FBgn0037153
D197R03	3L	25878221	TA	'T'	GCGATAAAA	INS	GCGATAAAA	0.108	strelka	intron_variant	MODIFIER	CG40178	intron	CG40178	FBgn0058178
D197R03	3R	6834460	T	'TA'	TATTTCTTT	INS	TATTTCTTT	0.069	strelka	upstream_gene_variant	MODIFIER	CR45904	exon_1	CR45902	FBgn0267562
D197R03	3R	8377210	TA	'T'	TATATATTT	INS	TATATATTT	0	consensus	downstream_gene_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
D197R03	3R	8377213	TTAG	'T'	ATATTTAGA	INS	ATATTTAGA	0	consensus	downstream_gene_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
D197R03	3R	10396582	CA	'C'	TGAACAAAA	INS	TGAACAAAA	0.137	strelka	5_prime_UTR_variant	MODIFIER	cwo	exon_2	cwo	FBgn0259938
D197R03	3R	10483847	TGG	'T'	TGTGTGGGG	INS	TGTGTGGGG	0.0645	mutect2	downstream_gene_variant	MODIFIER	CR45576	intergenic	intergenic	intergenic
D197R03	3R	10919366	GA	'G'	AACCGAAAA	INS	AACCGAAAA	0.0753	mutect2	intergenic_region	MODIFIER	CR45578-Tengl4	intergenic	intergenic	intergenic
D197R03	3R	11120938	CA	'C'	AGCCCAAAA	INS	AGCCCAAAA	0.087	mutect2	intergenic_region	MODIFIER	CG6629-Ugt86Dd	intergenic	intergenic	intergenic
D197R03	3R	12102330	T	'TG'	GTTGTTAAT	INS	GTTGTTAAT	0.0789	mutect2	intron_variant	MODIFIER	dpr17	intron	dpr17	FBgn0051361
D197R03	3R	12155101	G	'GA'	ACAAGAAAA	INS	TTTTCTTGT	0.0617	strelka	intron_variant	MODIFIER	dpr15	intron	dpr15	FBgn0037993
D197R03	3R	13920436	C	'CA'	ATGCCAAAA	INS	ATGCCAAAA	0.0984	strelka	intergenic_region	MODIFIER	ems-Art9	intergenic	intergenic	intergenic
D197R03	3R	14290537	GA	'G'	CACCGAAAA	INS	CACCGAAAA	0.119	strelka	upstream_gene_variant	MODIFIER	trx	intron	CG12207	FBgn0038220
D197R03	3R	14374959	AT	'A'	TCATATTTT	INS	TCATATTTT	0.0541	mutect2	upstream_gene_variant	MODIFIER	NK7.1	intergenic	intergenic	intergenic
D197R03	3R	14414407	GT	'G'	GAGTGTTTT	INS	GAGTGTTTT	0.0667	strelka	upstream_gene_variant	MODIFIER	natalisin	intron	cv-c	FBgn0086901
D197R03	3R	14496539	T	'TAGC'	AAAATTCAT	INS	AAAATTCAT	0.107	strelka	non_coding_transcript_exon_variant	MODIFIER	CR44177	exon_1	CR44177	FBgn0265066
D197R03	3R	14563806	A	'AT'	TTACATTTT	INS	AAAATGTAA	0.0986	strelka	upstream_gene_variant	MODIFIER	CG14854	intergenic	intergenic	intergenic
D197R03	3R	14766786	GT	'G'	GTGCGTTTT	INS	GTGCGTTTT	0.0449	strelka	intron_variant	MODIFIER	jvl	intron	jvl	FBgn0263929
D197R03	3R	16713425	G	'GCCC'	CATAGCCCC	INS	GGGGCTATG	0.103	mutect2	intron_variant	MODIFIER	Ubx	intron	Ubx	FBgn0003944
D197R03	3R	17270944	CT	'C'	CGCGCTTTT	INS	CGCGCTTTT	0.0735	mutect2,strelka	non_coding_transcript_exon_variant	MODIFIER	CR44258	exon_1	CR44258	FBgn0265198
D197R03	3R	17727266	AT	'A'	GATGATTTT	INS	GATGATTTT	0.0562	strelka	upstream_gene_variant	MODIFIER	Atg8b	intron	Lgr1	FBgn0016650
D197R03	3R	17789183	C	'CT'	AAATCTTTT	INS	AAATCTTTT	0.0893	strelka	intron_variant	MODIFIER	CG43102	intron	CG43102	FBgn0262562
D197R03	3R	18261626	AGT	'A'	GGTGAGTGT	INS	GGTGAGTGT	0.1	strelka	downstream_gene_variant	MODIFIER	moi	intergenic	intergenic	intergenic
D197R03	3R	18445215	AAT	'A'	ATAGAATAT	INS	ATAGAATAT	0.129	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
D197R03	3R	19190235	C	'CAGT'	GTAGCAGCA	INS	GTAGCAGCA	0.027	strelka	disruptive_inframe_insertion	MODERATE	CG31475	exon_2	CG31475	FBgn0051475
D197R03	3R	19843221	A	'AATT'	AAGGAATTC	INS	GAATTCCTT	0.0682	strelka	upstream_gene_variant	MODIFIER	CG4662	intergenic	intergenic	intergenic
D197R03	3R	20570969	TG	'T'	TTTTTGTGG	INS	TTTTTGTGG	0.129	mutect2	upstream_gene_variant	MODIFIER	snoRNA:Psi18S-301	intron	CG5191	FBgn0038803
D197R03	3R	20806223	C	'CA'	GCCACAAAA	INS	GCCACAAAA	0.127	strelka	3_prime_UTR_variant	MODIFIER	Syp	3UTR	Syp	FBgn0038826
D197R03	3R	21582409	CT	'C'	ACCGCTTTT	INS	ACCGCTTTT	0.0556	strelka	intron_variant	MODIFIER	InR	intron	InR	FBgn0283499
D197R03	3R	21600949	GA	'G'	GAGCGAAAA	INS	GAGCGAAAA	0.0543	strelka	intron_variant	MODIFIER	InR	intron	InR	FBgn0283499
D197R03	3R	23200275	G	'GT'	TTTAGTTTT	INS	AAAACTAAA	0.0476	strelka	5_prime_UTR_variant	MODIFIER	cnc	exon_1	cnc	FBgn0262975
D197R03	3R	24176269	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.194	strelka	intron_variant	MODIFIER	CG13606	intron	CG13606	FBgn0039161
D197R03	3R	24206797	C	'CA'	GACACAAAA	INS	GACACAAAA	0.0693	strelka	intron_variant	MODIFIER	twin	intron	twin	FBgn0011725
D197R03	3R	24672204	CT	'C'	TCTCCTTTT	INS	TCTCCTTTT	0.0842	strelka	intron_variant	MODIFIER	slo	intron	slo	FBgn0003429
D197R03	3R	25170871	GA	'G'	AGCCGAAAA	INS	AGCCGAAAA	0.0265	strelka	frameshift_variant	HIGH	lobo	exon_5	lobo	FBgn0083946
D197R03	3R	25884425	TA	'T'	AATTTAAAA	INS	AATTTAAAA	0.0816	strelka	upstream_gene_variant	MODIFIER	Tsp96F	intron	SppL	FBgn0039381
D197R03	3R	26141983	CT	'C'	CAGCCTTTT	INS	CAGCCTTTT	0.069	strelka	downstream_gene_variant	MODIFIER	CG6142	intergenic	intergenic	intergenic
D197R03	3R	29321688	CTT	'C'	GTTTCTTTT	INS	GTTTCTTTT	0.862	strelka	upstream_gene_variant	MODIFIER	Cnx99A	intergenic	intergenic	intergenic
D197R03	3R	30460827	CA	'C'	TGCCCAAAA	INS	TGCCCAAAA	0.0536	strelka	5_prime_UTR_variant	MODIFIER	CDase	exon_1	CDase	FBgn0039774
D197R03	3R	30775365	TCAA	'T'	ATCGTCAAA	INS	ATCGTCAAA	0.0769	mutect2	intron_variant	MODIFIER	zfh1	intron	zfh1	FBgn0004606
D197R03	3R	31972582	GT	'G'	TAACGTTTT	INS	TAACGTTTT	0.149	strelka	intron_variant	MODIFIER	heph	intron	heph	FBgn0011224
D197R03	4	648653	G	'GT'	TCGTGTTTT	INS	AAAACACGA	0.0676	strelka	upstream_gene_variant	MODIFIER	CG9935	intergenic	intergenic	intergenic
D197R03	X	114182	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.087	strelka	intergenic_region	MODIFIER	CHR_START-CR40469	intergenic	intergenic	intergenic
D197R03	X	114216	A	'AAT'	ACAAAAAAT	INS	ATTTTTTGT	0.13	strelka	intergenic_region	MODIFIER	CHR_START-CR40469	intergenic	intergenic	intergenic
D197R03	X	949321	CT	'C'	GACGCTTTT	INS	GACGCTTTT	0.0784	strelka	3_prime_UTR_variant	MODIFIER	CG3690	3UTR	CG3690	FBgn0040350
D197R03	X	1196517	GT	'G'	CGACGTTTT	INS	CGACGTTTT	0.111	strelka	3_prime_UTR_variant	MODIFIER	CG11380	3UTR	CG11380	FBgn0040359
D197R03	X	1733926	ACACC	'A'	ACACACACC	INS	ACACACACC	0.0638	mutect2	downstream_gene_variant	MODIFIER	Scgdelta	intergenic	intergenic	intergenic
D197R03	X	2082671	CCT	'C'	ACCCCCTTT	INS	ACCCCCTTT	0.114	mutect2,strelka	upstream_gene_variant	MODIFIER	CG16903	intron	Unc-76	FBgn0040395
D197R03	X	2539709	TG	'T'	CCACTGGGG	INS	CCACTGGGG	0.174	strelka	intron_variant	MODIFIER	trol	intron	trol	FBgn0267911
D197R03	X	2820461	TG	'T'	TGGCTGGGG	INS	TGGCTGGGG	0.161	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
D197R03	X	3104784	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.222	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
D197R03	X	3125024	C	'CA'	CCCGCAAAA	INS	CCCGCAAAA	0.182	strelka	upstream_gene_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
D197R03	X	3424762	C	'CT'	CTCGCTTTT	INS	CTCGCTTTT	0.194	strelka	downstream_gene_variant	MODIFIER	tRNA:CR32493	intron	CG12535	FBgn0029657
D197R03	X	3443758	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.0952	strelka	upstream_gene_variant	MODIFIER	CG12535	intron	CG12535	FBgn0029657
D197R03	X	3489721	CA	'C'	ACTCCAAAA	INS	ACTCCAAAA	0.192	strelka	3_prime_UTR_variant	MODIFIER	CG10803	3UTR	CG10803	FBgn0029666
D197R03	X	3836137	CA	'C'	GCTTCAAAA	INS	GCTTCAAAA	0.0811	strelka	5_prime_UTR_variant	MODIFIER	ec	5UTR	ec	FBgn0000542
D197R03	X	4725651	TTGC	'T'	GCTGTTGCT	INS	GCTGTTGCT	0.107	strelka	intron_variant	MODIFIER	Proc-R	intron	Proc-R	FBgn0029723
D197R03	X	5222277	GGAT	'G'	TTTGGGATG	INS	TTTGGGATG	0.0217	mutect2	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
D197R03	X	5735831	AGT	'A'	GTCCAGTGT	INS	GTCCAGTGT	0.156	strelka	downstream_gene_variant	MODIFIER	CG15773	intron	CG32758	FBgn0052758
D197R03	X	6310884	TGA	'T'	ATAATGAGA	INS	ATAATGAGA	0.167	strelka	downstream_gene_variant	MODIFIER	CG3823	intron	CG15894	FBgn0029864
D197R03	X	6381429	T	'TTA'	TCTTTTCTT	INS	TCTTTTCTT	0.129	mutect2	upstream_gene_variant	MODIFIER	CG33664	intergenic	intergenic	intergenic
D197R03	X	6409089	AG	'A'	AAAAAGGGG	INS	AAAAAGGGG	0.111	strelka	intergenic_region	MODIFIER	CG33669-CG33668	intergenic	intergenic	intergenic
D197R03	X	6658275	ACCC	'A'	CAGCACCCA	INS	CAGCACCCA	0.107	strelka	disruptive_inframe_deletion	MODERATE	l(1)G0148	exon	Cdc7	FBgn0028360
D197R03	X	6936890	GT	'G'	GCCCGTTTT	INS	GCCCGTTTT	0.167	strelka	intron_variant	MODIFIER	CG14431	intron	CG14431	FBgn0029922
D197R03	X	7259119	A	'AT'	TGCTATTTT	INS	AAAATAGCA	0.13	strelka	intron_variant	MODIFIER	CR44357	ncRNA	CR44357	FBgn0265457
D197R03	X	7390435	CA	'C'	TGTACAAAA	INS	TGTACAAAA	0.185	strelka	intron_variant	MODIFIER	CR44357	intron	CG1677	FBgn0029941
D197R03	X	7433899	G	'GA'	CACCGAAAA	INS	TTTTCGGTG	0.129	strelka	intergenic_region	MODIFIER	CG32726-CR45533	intergenic	intergenic	intergenic
D197R03	X	7505680	CA	'C'	AAGGCAAAA	INS	AAGGCAAAA	0.0851	strelka	downstream_gene_variant	MODIFIER	CR43835	intergenic	intergenic	intergenic
D197R03	X	7978023	GA	'G'	AGTCGAAAA	INS	AGTCGAAAA	0.146	strelka	intron_variant	MODIFIER	sn	intron	sn	FBgn0003447
D197R03	X	8418009	CA	'C'	GGAGCAAAA	INS	GGAGCAAAA	0.28	strelka	upstream_gene_variant	MODIFIER	Trf2	intron	Trf2	FBgn0261793
D197R03	X	8563549	TAAC	'T'	GTGGTAACA	INS	GTGGTAACA	0.093	strelka	disruptive_inframe_deletion	MODERATE	Trf4-1	exon_2	Trf4-1	FBgn0030049
D197R03	X	9343768	C	'CA'	GTAGCCAAA	INS	GTAGCCAAA	0.229	mutect2,strelka	intron_variant	MODIFIER	CG34449	intron	CG34449	FBgn0085478
D197R03	X	9534316	CT	'C'	TGTTCTTTT	INS	TGTTCTTTT	0.161	strelka	3_prime_UTR_variant	MODIFIER	CG34026	3UTR	CG34026	FBgn0054026
D197R03	X	9699434	C	'CT'	TTTTCTTTT	INS	TTTTCTTTT	0.2	strelka	downstream_gene_variant	MODIFIER	btd	intergenic	intergenic	intergenic
D197R03	X	10364657	TA	'T'	CAAATAAAA	INS	CAAATAAAA	0.125	strelka	upstream_gene_variant	MODIFIER	CG17841	intron	l(1)G0289	FBgn0028331
D197R03	X	11173963	CT	'C'	CAACCTTTT	INS	CAACCTTTT	0.182	strelka	upstream_gene_variant	MODIFIER	antdh	intergenic	intergenic	intergenic
D197R03	X	11400316	CA	'C'	CTATCAAAA	INS	CTATCAAAA	0.258	strelka	intron_variant	MODIFIER	dlg1	intron	dlg1	FBgn0001624
D197R03	X	11622409	TTG	'T'	TTGTTTGTG	INS	TTGTTTGTG	0.1	strelka	downstream_gene_variant	MODIFIER	Met	intron	Ptp10D	FBgn0004370
D197R03	X	12380065	T	'TCTATTTTTTCCCCAA'	TTTTTCTTT	INS	TTTTTCTTT	0.19	strelka	upstream_gene_variant	MODIFIER	Ir11a	intergenic	intergenic	intergenic
D197R03	X	13239871	GT	'G'	TTGGGTTTT	INS	TTGGGTTTT	0.152	strelka	upstream_gene_variant	MODIFIER	CG32639	intron	mew	FBgn0004456
D197R03	X	13345745	CGT	'C'	TTAGCGTGT	INS	TTAGCGTGT	0.111	strelka	upstream_gene_variant	MODIFIER	CR45708	exon_1	CR45709	FBgn0267273
D197R03	X	13347674	CGT	'C'	CCAGCGTGT	INS	CCAGCGTGT	0.172	strelka	upstream_gene_variant	MODIFIER	CR45708	intergenic	intergenic	intergenic
D197R03	X	13480376	T	'TA'	CCCATGTTT	INS	CCCATGTTT	0.158	mutect2	intron_variant	MODIFIER	Neto	intron	Neto	FBgn0265416
D197R03	X	13886058	TGCA	'T'	CAACTGCAG	INS	CAACTGCAG	0.0769	strelka	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
D197R03	X	14067213	TA	'T'	GACTTAAAA	INS	GACTTAAAA	0.139	strelka	upstream_gene_variant	MODIFIER	tRNA:S474:12Eh	intergenic	intergenic	intergenic
D197R03	X	14201328	AT	'A'	CAGCATTTT	INS	CAGCATTTT	0.116	strelka	upstream_gene_variant	MODIFIER	l(1)G0007	intergenic	intergenic	intergenic
D197R03	X	14515662	CGT	'C'	TCCCCGTGT	INS	TCCCCGTGT	0.125	strelka	upstream_gene_variant	MODIFIER	CR44110	intergenic	intergenic	intergenic
D197R03	X	14561373	GGCA	'G'	AGAAGGCAG	INS	AGAAGGCAG	0.0851	strelka	intergenic_region	MODIFIER	CR45521-CG14414	intergenic	intergenic	intergenic
D197R03	X	14697768	CA	'C'	TATACAAAA	INS	TATACAAAA	0.278	strelka	upstream_gene_variant	MODIFIER	CG43088	intron	NetB	FBgn0015774
D197R03	X	14857300	GT	'G'	GCTCGTTTT	INS	GCTCGTTTT	0.16	strelka	upstream_gene_variant	MODIFIER	CG9521	intron	Flo2	FBgn0264078
D197R03	X	15252018	CT	'C'	CATCCTTTT	INS	CATCCTTTT	0.164	strelka	intergenic_region	MODIFIER	PPYR1-CG9106	intergenic	intergenic	intergenic
D197R03	X	15596896	GAT	'G'	CAGAGATAT	INS	CAGAGATAT	0.2	strelka	upstream_gene_variant	MODIFIER	CG9220	intergenic	intergenic	intergenic
D197R03	X	15629155	G	'GA'	AAACGAAAA	INS	TTTTCGTTT	0.133	strelka	upstream_gene_variant	MODIFIER	sog	intron	sog	FBgn0003463
D197R03	X	16139455	GA	'G'	ATTCGAAAA	INS	ATTCGAAAA	0.0909	strelka	intron_variant	MODIFIER	disco-r	intron	disco-r	FBgn0042650
D197R03	X	16933816	C	'CA'	AAACCAAAA	INS	AAACCAAAA	0.135	strelka	downstream_gene_variant	MODIFIER	wus	intron	CG4928	FBgn0027556
D197R03	X	17371236	C	'CA'	AACCCAAAA	INS	AACCCAAAA	0.267	strelka	intergenic_region	MODIFIER	B-H2-CR43491	intergenic	intergenic	intergenic
D197R03	X	17694587	G	'GA'	TGCCGAAAA	INS	TTTTCGGCA	0.154	strelka	upstream_gene_variant	MODIFIER	chas	intron	chas	FBgn0263258
D197R03	X	18006347	TTGC	'T'	GCTGTTGCT	INS	GCTGTTGCT	0.103	strelka	disruptive_inframe_deletion	MODERATE	CG12672	exon	CG12672	FBgn0030886
D197R03	X	18079537	C	'CA'	AACGCAAAA	INS	AACGCAAAA	0.154	strelka	3_prime_UTR_variant	MODIFIER	CG7536	3UTR	CG7536	FBgn0030890
D197R03	X	19104001	T	'TGA'	CGTGTGTGT	INS	CGTGTGTGT	0.12	strelka	intergenic_region	MODIFIER	CR45503-CG15882	intergenic	intergenic	intergenic
D197R03	X	20312630	TA	'T'	AAAATAAAA	INS	AAAATAAAA	0.0952	strelka	intron_variant	MODIFIER	CG1504	intron	CG1504	FBgn0031100
D197R03	X	20829243	GC	'G'	CCGCGCCCC	INS	CCGCGCCCC	0.103	strelka	5_prime_UTR_variant	MODIFIER	shakB	exon_3	shakB	FBgn0085387
D197R03	X	20923794	CGT	'C'	CGCACGTGT	INS	CGCACGTGT	0.118	strelka	5_prime_UTR_variant	MODIFIER	shakB	exon_1	shakB	FBgn0085387
D197R03	X	21212856	AAG	'A'	AAAAAAGAA	INS	AAAAAAGAA	0.114	mutect2	intron_variant	MODIFIER	CG32521	intron	CG32521	FBgn0052521
D197R03	X	21581021	GT	'G'	TTTCGTTTT	INS	TTTCGTTTT	0.156	strelka	upstream_gene_variant	MODIFIER	CR44711	intergenic	intergenic	intergenic
D197R05	2L	1063363	CA	'C'	CTCCCAAAA	INS	CTCCCAAAA	0.0659	strelka	intron_variant	MODIFIER	S	intron	S	FBgn0003310
D197R05	2L	1637880	C	'CAT'	CCAGCATAT	INS	CCAGCATAT	0.184	strelka	intergenic_region	MODIFIER	CR44603-CR45695	intergenic	intergenic	intergenic
D197R05	2L	1902390	CT	'C'	ATCACTTTT	INS	ATCACTTTT	0.0851	strelka	intron_variant	MODIFIER	CG7337	intron	Wdr62	FBgn0031374
D197R05	2L	3307368	AAAAAAAAAAAAC	'A'	AAAAAAAAA	INS	AAAAAAAAA	0.0714	mutect2	upstream_gene_variant	MODIFIER	CG9663	intron	CG3277	FBgn0031518
D197R05	2L	3440278	T	'TC'	GGGCTCCCC	INS	GGGCTCCCC	0.344	strelka	intergenic_region	MODIFIER	pgant2-CG2772	intergenic	intergenic	intergenic
D197R05	2L	3985919	G	'GC'	TCTTGCAAA	INS	TTTGCAAGA	0.0674	mutect2	intron_variant	MODIFIER	fred	intron	fred	FBgn0051774
D197R05	2L	4392798	G	'GT'	TTCGGTTTT	INS	AAAACCGAA	0.0682	strelka	3_prime_UTR_variant	MODIFIER	CG3652	3UTR	CG3652	FBgn0031600
D197R05	2L	5288044	TTG	'T'	GTGTTTGTG	INS	GTGTTTGTG	0.0513	strelka	upstream_gene_variant	MODIFIER	vri	exon_1	CR44742	FBgn0265955
D197R05	2L	5638473	CA	'C'	GAGGCAAAA	INS	GAGGCAAAA	0.0541	strelka	upstream_gene_variant	MODIFIER	mir-959	intron	DIP-theta	FBgn0051646
D197R05	2L	6473435	GCACACA	'G'	CCCCGCACA	INS	CCCCGCACA	0.0909	strelka	upstream_gene_variant	MODIFIER	mmy	intron	mmy	FBgn0259749
D197R05	2L	7909622	C	'CCA'	AAGCCAAAA	INS	AAGCCAAAA	0.127	strelka	intron_variant	MODIFIER	Snoo	intron	Snoo	FBgn0085450
D197R05	2L	9740370	GCA	'G'	AAGCGCACA	INS	AAGCGCACA	0.116	strelka	downstream_gene_variant	MODIFIER	CG13117	intron	Nckx30C	FBgn0028704
D197R05	2L	9858943	CACACACAT	'C'	CACACACAC	INS	CACACACAC	0.0714	mutect2	intron_variant	MODIFIER	nAChRalpha6	intron	nAChRalpha6	FBgn0032151
D197R05	2L	10388847	TTG	'T'	GTGCTTGTG	INS	GTGCTTGTG	0.0769	strelka	upstream_gene_variant	MODIFIER	Cdk1	intron	da	FBgn0267821
D197R05	2L	10995187	CT	'C'	TTACCTTTT	INS	TTACCTTTT	0.128	strelka	3_prime_UTR_variant	MODIFIER	CG16833	3UTR	CG16833	FBgn0026147
D197R05	2L	11486912	GA	'G'	AAATGAAAA	INS	AAATGAAAA	0.0806	strelka	3_prime_UTR_variant	MODIFIER	sala	3UTR	sala	FBgn0003313
D197R05	2L	11501857	G	'GA'	AAACGAAAA	INS	TTTTCGTTT	0.0882	strelka	5_prime_UTR_variant	MODIFIER	spz4	5UTR	spz4	FBgn0032362
D197R05	2L	12484192	G	'GA'	TGTGGAAAC	INS	GTTTCCACA	0.075	mutect2	upstream_gene_variant	MODIFIER	bun	intron	bun	FBgn0259176
D197R05	2L	12950552	CCT	'C'	CTCCCCTCT	INS	CTCCCCTCT	0.0625	strelka	intergenic_region	MODIFIER	CR44183-CG16800	intergenic	intergenic	intergenic
D197R05	2L	14231621	CA	'C'	AGAACAAAA	INS	AGAACAAAA	0.0741	strelka	upstream_gene_variant	MODIFIER	CR44727	intron	Dyrk2	FBgn0016930
D197R05	2L	14414455	GA	'G'	TTTTGAAAA	INS	TTTTGAAAA	0.111	strelka	upstream_gene_variant	MODIFIER	elB	intergenic	intergenic	intergenic
D197R05	2L	14941349	CAT	'C'	CACACATAT	INS	CACACATAT	0.0385	mutect2	intron_variant	MODIFIER	CG42313	intron	CG42313	FBgn0259213
D197R05	2L	15125714	TA	'T'	CAACTAAAA	INS	CAACTAAAA	0.118	strelka	upstream_gene_variant	MODIFIER	CR44706	intergenic	intergenic	intergenic
D197R05	2L	15792183	A	'ACT'	GCACACACA	INS	TGTGTGTGC	0.0968	strelka	downstream_gene_variant	MODIFIER	CG18109	intergenic	intergenic	intergenic
D197R05	2L	15893186	GA	'G'	AAATGAAAA	INS	AAATGAAAA	0.0952	strelka	upstream_gene_variant	MODIFIER	CG31735	intron	Tep1	FBgn0041183
D197R05	2L	17449611	ACT	'A'	ACTCACTCT	INS	ACTCACTCT	0.093	strelka	upstream_gene_variant	MODIFIER	CG5050	intron	dl	FBgn0260632
D197R05	2L	17695059	GT	'G'	GTATGTTTT	INS	GTATGTTTT	0.119	strelka	intron_variant	MODIFIER	CadN	intron	CadN	FBgn0015609
D197R05	2L	18313725	CT	'C'	TGACCTTTT	INS	TGACCTTTT	0.163	strelka	upstream_gene_variant	MODIFIER	CG43354	exon_1	CR44489	FBgn0265682
D197R05	2L	20107016	TAA	'T'	AATTTAAAA	INS	AATTTAAAA	0.0388	strelka	upstream_gene_variant	MODIFIER	CG13970	intergenic	intergenic	intergenic
D197R05	2L	21336723	CA	'C'	AACCCAAAA	INS	AACCCAAAA	0.0875	strelka	upstream_gene_variant	MODIFIER	dimm	intron	dimm	FBgn0023091
D197R05	2L	21551038	GT	'G'	GCCGGTTTT	INS	GCCGGTTTT	0.182	strelka	intergenic_region	MODIFIER	His-Psi:CR31614-Lamp1	intergenic	intergenic	intergenic
D197R05	2L	21717709	CT	'C'	AAAGCTTTT	INS	AAAGCTTTT	0.0921	strelka	intron_variant	MODIFIER	CG31619	intron	nolo	FBgn0051619
D197R05	2L	23074086	CA	'C'	CAACCAAAA	INS	CAACCAAAA	0.0769	strelka	downstream_gene_variant	MODIFIER	CR43242	intergenic	intergenic	intergenic
D197R05	2R	3514280	TA	'T'	TTTTTATAT	INS	TTTTTATAT	0.0851	strelka	intergenic_region	MODIFIER	CR45227-CR41501	intergenic	intergenic	intergenic
D197R05	2R	4784881	TA	'T'	GAACTAAAA	INS	GAACTAAAA	0.0952	strelka	upstream_gene_variant	MODIFIER	CR43281	ncRNA	CR46064	FBgn0267733
D197R05	2R	4912483	C	'CA'	AGTACAAAA	INS	AGTACAAAA	0.226	strelka	upstream_gene_variant	MODIFIER	CG44102	intergenic	intergenic	intergenic
D197R05	2R	6513252	GA	'G'	GATCGAAAA	INS	GATCGAAAA	0.0641	strelka	upstream_gene_variant	MODIFIER	CR45127	intron	jing	FBgn0086655
D197R05	2R	8979163	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.0864	strelka	intron_variant	MODIFIER	CG8213	intron	CG8213	FBgn0033359
D197R05	2R	9570158	TA	'T'	TGACTAAAA	INS	TGACTAAAA	0.0723	strelka	splice_region_variant&intron_variant	LOW	Not1	intron	Not1	FBgn0085436
D197R05	2R	10160710	A	'AGG'	ATTCATGTG	INS	CACATGAAT	0.0658	strelka	upstream_gene_variant	MODIFIER	mlt	intron	KCNQ	FBgn0033494
D197R05	2R	10696470	A	'ATGGGTATTGGAG'	GGGTATGGG	INS	CCCATACCC	0.18	mutect2	intron_variant	MODIFIER	stan	intron	stan	FBgn0024836
D197R05	2R	11071739	TA	'T'	TTTTTATAT	INS	TTTTTATAT	0.105	mutect2	intron_variant	MODIFIER	luna	intron	luna	FBgn0040765
D197R05	2R	11243928	GA	'G'	ATGCGAAAA	INS	ATGCGAAAA	0.0633	strelka	upstream_gene_variant	MODIFIER	CG13216	intergenic	intergenic	intergenic
D197R05	2R	12102503	CGA	'C'	AGAGCGAGA	INS	AGAGCGAGA	0.0769	strelka	intron_variant	MODIFIER	jeb	intron	jeb	FBgn0086677
D197R05	2R	12124246	CAGT	'C'	AAGGCAGTA	INS	AAGGCAGTA	0.0952	strelka	upstream_gene_variant	MODIFIER	jeb	intergenic	intergenic	intergenic
D197R05	2R	12491508	G	'GAGA'	TGAAGAGAA	INS	TTCTCTTCA	0.0577	strelka	upstream_gene_variant	MODIFIER	CG34234	intron	fdl	FBgn0045063
D197R05	2R	12707121	CA	'C'	CCACCAAAA	INS	CCACCAAAA	0.163	strelka	intron_variant	MODIFIER	CG42663	intron	CG42663	FBgn0261545
D197R05	2R	14281758	ACAGT	'A'	AAACACAGT	INS	AAACACAGT	0.0536	mutect2	intron_variant	MODIFIER	Ih	intron	Ih	FBgn0263397
D197R05	2R	14683056	A	'AT'	CCGTATTTT	INS	AAAATACGG	0.0615	strelka	upstream_gene_variant	MODIFIER	CG30480	intron	mspo	FBgn0020269
D197R05	2R	14786785	GCAA	'G'	CCCAGCAAC	INS	CCCAGCAAC	0.102	strelka	intron_variant	MODIFIER	kn	intron	kn	FBgn0001319
D197R05	2R	14982424	GT	'G'	ACTGGTTTT	INS	ACTGGTTTT	0.0694	strelka	downstream_gene_variant	MODIFIER	ckn	intron	pcs	FBgn0033988
D197R05	2R	15158593	GAC	'G'	ACTCGACAC	INS	ACTCGACAC	0.0794	strelka	downstream_gene_variant	MODIFIER	CR43831	intron	igl	FBgn0013467
D197R05	2R	15439462	A	'AAAC'	GAAAAAAAA	INS	TTTTTTTTC	0.203	mutect2	intron_variant	MODIFIER	CG43729	intron	CG43729	FBgn0263980
D197R05	2R	15483890	C	'CA'	TGTGCAAAA	INS	TGTGCAAAA	0.055	strelka	upstream_gene_variant	MODIFIER	CG8180	intergenic	intergenic	intergenic
D197R05	2R	15512882	GT	'G'	TTCGGTTTT	INS	TTCGGTTTT	0.05	strelka	upstream_gene_variant	MODIFIER	GalNAc-T1	intron	GalNAc-T1	FBgn0034025
D197R05	2R	15577124	CT	'C'	TACTCTTTT	INS	TACTCTTTT	0.0909	strelka	upstream_gene_variant	MODIFIER	CG8204	intergenic	intergenic	intergenic
D197R05	2R	16067761	TA	'T'	CATTTATTT	INS	CATTTATTT	0.0571	strelka	upstream_gene_variant	MODIFIER	mir-137	intergenic	intergenic	intergenic
D197R05	2R	17187356	AAAAAAAAAT	'A'	AAAAAAAAA	INS	AAAAAAAAA	0.0833	mutect2	upstream_gene_variant	MODIFIER	CR45323	intergenic	intergenic	intergenic
D197R05	2R	17930023	TTTA	'T'	TTTTTTTAC	INS	TTTTTTTAC	0.0957	mutect2	downstream_gene_variant	MODIFIER	Elk	intergenic	intergenic	intergenic
D197R05	2R	18064885	CAACTGA	'C'	AATGCAACT	INS	AATGCAACT	0.109	strelka	intron_variant	MODIFIER	CG34386	intron	CG34386	FBgn0085415
D197R05	2R	18476722	GT	'G'	GTTTGTTTC	INS	GTTTGTTTC	0.0421	strelka	5_prime_UTR_variant	MODIFIER	CG30116	5UTR	CG30116	FBgn0028496
D197R05	2R	18708101	C	'CA'	TTTTCTAAC	INS	TTTTCTAAC	0.0625	strelka	3_prime_UTR_variant	MODIFIER	CG15073	3UTR	CG15073	FBgn0034379
D197R05	2R	20693796	G	'GA'	GCCCGAAGA	INS	TCTTCGGGC	0.0635	strelka	upstream_gene_variant	MODIFIER	dpr	intergenic	intergenic	intergenic
D197R05	2R	21523896	A	'ACACACG'	ACACACACA	INS	TGTGTGTGT	0.0563	mutect2	upstream_gene_variant	MODIFIER	CG10494	intron	Egfr	FBgn0003731
D197R05	2R	21772046	TTG	'T'	CCGTTTGTG	INS	CCGTTTGTG	0.0633	strelka	upstream_gene_variant	MODIFIER	CG4021	intergenic	intergenic	intergenic
D197R05	2R	21802803	CG	'C'	AATACGGGG	INS	AATACGGGG	0.0455	strelka	upstream_gene_variant	MODIFIER	CG18735	intergenic	intergenic	intergenic
D197R05	2R	24301263	T	'TTTTTTG'	TTTTTTTTT	INS	TTTTTTTTT	0	consensus	upstream_gene_variant	MODIFIER	betaTub60D	intergenic	intergenic	intergenic
D197R05	3L	641849	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.0758	strelka	upstream_gene_variant	MODIFIER	CR43423	ncRNA	CR43334	FBgn0263039
D197R05	3L	935635	AGAC	'A'	GAGCAGACG	INS	GAGCAGACG	0.0667	strelka	intron_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
D197R05	3L	1031366	TG	'T'	AATGTGGGA	INS	AATGTGGGA	0.147	strelka	upstream_gene_variant	MODIFIER	CG9205	intron	trio	FBgn0024277
D197R05	3L	3005935	TA	'T'	CCGATAAAA	INS	CCGATAAAA	0.0625	strelka	intron_variant	MODIFIER	FMRFaR	intron	FMRFaR	FBgn0035385
D197R05	3L	4694058	G	'GT'	TTTGGTTTT	INS	AAAACCAAA	0.1	strelka	upstream_gene_variant	MODIFIER	CG18418	intron	RhoGEF64C	FBgn0035574
D197R05	3L	4999729	GAC	'G'	ATGCGACAC	INS	ATGCGACAC	0.0769	strelka	upstream_gene_variant	MODIFIER	CG32232	intron	Con	FBgn0005775
D197R05	3L	5210610	A	'ACAAATAAACACTCCCG'	ACACACACA	INS	TGTGTGTGT	0.75	mutect2	intron_variant	MODIFIER	shep	intron	shep	FBgn0052423
D197R05	3L	5658135	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.082	strelka	5_prime_UTR_variant	MODIFIER	sif	exon_1	sif	FBgn0085447
D197R05	3L	6254588	TTA	'T'	TTTTTTATT	INS	TTTTTTATT	0.122	mutect2	downstream_gene_variant	MODIFIER	CG10163	intron	Best2	FBgn0035696
D197R05	3L	6292069	AAGC	'A'	GGAGAAGCA	INS	GGAGAAGCA	0.0563	strelka	intergenic_region	MODIFIER	CG43168-CR45420	intergenic	intergenic	intergenic
D197R05	3L	7036561	A	'AGAGG'	TGAGAGAAA	INS	TTTCTCTCA	0.158	strelka	downstream_gene_variant	MODIFIER	CR45832	intron	Mp	FBgn0260660
D197R05	3L	7142758	CA	'C'	CATCCAAAA	INS	CATCCAAAA	0.0575	strelka	3_prime_UTR_variant	MODIFIER	melt	3UTR	melt	FBgn0023001
D197R05	3L	7713808	AT	'A'	GCAAATAAA	INS	GCAAATAAA	0.0602	strelka	upstream_gene_variant	MODIFIER	Ank2	intron	Ank2	FBgn0261788
D197R05	3L	7848878	AAAAGC	'A'	TTTAAAAAG	INS	TTTAAAAAG	0	consensus	intron_variant	MODIFIER	Pdp1	intron	Pdp1	FBgn0016694
D197R05	3L	8855129	G	'GA'	GCCAGAAAA	INS	TTTTCTGGC	0.16	strelka	intron_variant	MODIFIER	dally	intron	dally	FBgn0263930
D197R05	3L	9440555	G	'GA'	TTTTGAAAA	INS	TTTTCAAAA	0.162	strelka	3_prime_UTR_variant	MODIFIER	Nf-YA	3UTR	Nf-YA	FBgn0035993
D197R05	3L	9605453	TTCTTTATTATTA	'T'	CCCCTTCTT	INS	CCCCTTCTT	0.0769	mutect2	upstream_gene_variant	MODIFIER	CG3088	intron	CG46121	FBgn0267796
D197R05	3L	9628213	CA	'C'	AAGCCAAAA	INS	AAGCCAAAA	0.0685	mutect2,strelka	frameshift_variant	HIGH	Or67b	exon_6	Or67b	FBgn0036019
D197R05	3L	11430053	C	'CT'	TGATCTTTT	INS	TGATCTTTT	0.0794	strelka	downstream_gene_variant	MODIFIER	CG7560	intergenic	intergenic	intergenic
D197R05	3L	12403489	T	'TTC'	TTTTTTTCT	INS	TTTTTTTCT	0.108	mutect2	3_prime_UTR_variant	MODIFIER	CG32103	3UTR	CG32103	FBgn0052103
D197R05	3L	14308672	GA	'G'	ATGCGAAAA	INS	ATGCGAAAA	0.0645	strelka	intron_variant	MODIFIER	fz	intron	fz	FBgn0001085
D197R05	3L	14673907	A	'AAGCAAAAAATT'	ATATAAGCA	INS	TGCTTATAT	0.0526	strelka	upstream_gene_variant	MODIFIER	CG43121	intron	ome	FBgn0259175
D197R05	3L	16219345	GTGA	'G'	GCTTGTGAT	INS	GCTTGTGAT	0.0833	strelka	upstream_gene_variant	MODIFIER	CG13073	intergenic	intergenic	intergenic
D197R05	3L	16490064	T	'TTATTTACATCACAATA'	TCAATAACT	INS	TCAATAACT	0.34	strelka	downstream_gene_variant	MODIFIER	CG42514	intron	CG33158	FBgn0053158
D197R05	3L	16515633	T	'TGCGTGTGTGC'	TGTATGTGT	INS	TGTATGTGT	0.0938	mutect2	intron_variant	MODIFIER	CG43373	intron	CG43373	FBgn0263131
D197R05	3L	18251162	AAAAATAT	'A'	CCCCAAAAA	INS	CCCCAAAAA	0.101	mutect2	upstream_gene_variant	MODIFIER	CheA75a	intergenic	intergenic	intergenic
D197R05	3L	19058925	CGTGT	'C'	TCAACGTGT	INS	TCAACGTGT	0.0253	mutect2	upstream_gene_variant	MODIFIER	CG6812	intergenic	intergenic	intergenic
D197R05	3L	22097338	GT	'G'	CGGCGTTTT	INS	CGGCGTTTT	0.0548	strelka	intergenic_region	MODIFIER	msopa-CR45236	intergenic	intergenic	intergenic
D197R05	3L	27087931	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG40228	intergenic	intergenic	intergenic
D197R05	3R	1619673	GA	'G'	TGGAGAAAA	INS	TGGAGAAAA	0.146	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R05	3R	3857127	AT	'A'	AATAATTTT	INS	AATAATTTT	0.0725	strelka	intron_variant	MODIFIER	CG41099	intron	CG41099	FBgn0039955
D197R05	3R	6942705	TTG	'T'	TAATTTGTT	INS	TAATTTGTT	0.145	mutect2	intron_variant	MODIFIER	Antp	intron	Antp	FBgn0260642
D197R05	3R	7254933	CA	'C'	GAGCCAAAA	INS	GAGCCAAAA	0.0625	strelka	upstream_gene_variant	MODIFIER	Obp84a	intron	Gld	FBgn0001112
D197R05	3R	7259562	CT	'C'	TAGACTTTT	INS	TAGACTTTT	0.0943	strelka	upstream_gene_variant	MODIFIER	CR44338	intron	Gld	FBgn0001112
D197R05	3R	7418897	T	'TATTTA'	TATTTTTTT	INS	TATTTTTTT	0.119	strelka	upstream_gene_variant	MODIFIER	CG31544	intergenic	intergenic	intergenic
D197R05	3R	8373702	GGCT	'G'	CGGCGGCTG	INS	CGGCGGCTG	0.0645	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
D197R05	3R	9080224	TG	'T'	TTTTTGAAT	INS	TTTTTGAAT	0.0667	strelka	intron_variant	MODIFIER	pum	intron	pum	FBgn0003165
D197R05	3R	9144698	CA	'C'	GCAGCAAAA	INS	GCAGCAAAA	0.0877	strelka	intron_variant	MODIFIER	pum	intron	pum	FBgn0003165
D197R05	3R	9228469	CA	'C'	GAAACAAAA	INS	GAAACAAAA	0.0964	strelka	upstream_gene_variant	MODIFIER	pum	ncRNA	CR45196	FBgn0266706
D197R05	3R	9820919	G	'GT'	AGCTGTTTT	INS	AAAACAGCT	0.0952	strelka	frameshift_variant	HIGH	CG42857	exon	CG42857	FBgn0262104
D197R05	3R	9821542	CTGGT	'C'	GGGCCTGGT	INS	GGGCCTGGT	0.0879	strelka	upstream_gene_variant	MODIFIER	CG16904	ncRNA	CR45790	FBgn0267440
D197R05	3R	10279938	GA	'G'	ATAGGAAAG	INS	ATAGGAAAG	0.0645	strelka	upstream_gene_variant	MODIFIER	tRNA:S2b:86A	intron	CG43143	FBgn0262617
D197R05	3R	10279944	A	'AGC'	AAGGAAAAA	INS	TTTTTCCTT	0.0656	strelka	upstream_gene_variant	MODIFIER	tRNA:S2b:86A	intron	CG43143	FBgn0262617
D197R05	3R	10456756	C	'CA'	GGACCAAAA	INS	GGACCAAAA	0.0488	strelka	upstream_gene_variant	MODIFIER	CR44939	intergenic	intergenic	intergenic
D197R05	3R	10478635	AC	'A'	TCTAACAGA	INS	TCTAACAGA	0.069	mutect2,strelka	intergenic_region	MODIFIER	CR44955-CR45576	intergenic	intergenic	intergenic
D197R05	3R	10624238	CT	'C'	GCTTCTTTT	INS	GCTTCTTTT	0.0571	strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
D197R05	3R	10726417	TA	'T'	AGAGTAAAA	INS	AGAGTAAAA	0.137	strelka	intergenic_region	MODIFIER	CG4073-tomboy20	intergenic	intergenic	intergenic
D197R05	3R	12012981	CA	'C'	AGGCCAAAA	INS	AGGCCAAAA	0.0562	strelka	frameshift_variant	HIGH	GCC185	exon_3	GCC185	FBgn0037979
D197R05	3R	13233367	GA	'G'	CGCCGAAAA	INS	CGCCGAAAA	0.0758	strelka	intron_variant	MODIFIER	Ace	intron	Ace	FBgn0000024
D197R05	3R	13272904	CG	'C'	GGATCGGTT	INS	GGATCGGTT	0.0952	mutect2	upstream_gene_variant	MODIFIER	CG8449	intergenic	intergenic	intergenic
D197R05	3R	13975613	GA	'G'	GACCGAAAA	INS	GACCGAAAA	0.113	strelka	upstream_gene_variant	MODIFIER	rdx	intron	rdx	FBgn0264493
D197R05	3R	14654806	C	'CT'	TTCTCTTTT	INS	TTCTCTTTT	0.137	strelka	upstream_gene_variant	MODIFIER	CG3505	intron	l(3)L1231	FBgn0086686
D197R05	3R	14722912	G	'GT'	ATGGGTTTT	INS	AAAACCCAT	0.0714	strelka	downstream_gene_variant	MODIFIER	CG7530	intron	kibra	FBgn0262127
D197R05	3R	17965226	CATTCGCTAGATA	'C'	GAATCATTC	INS	GAATCATTC	0.0725	mutect2,strelka	intron_variant	MODIFIER	cpo	intron	cpo	FBgn0263995
D197R05	3R	18417438	G	'GT'	ATTGGTTTT	INS	AAAACCAAT	0.0816	strelka	upstream_gene_variant	MODIFIER	CG31122	intron	fru	FBgn0004652
D197R05	3R	18418253	T	'TTC'	CTTTTTTTT	INS	CTTTTTTTT	0.0851	strelka	downstream_gene_variant	MODIFIER	fru	intron	fru	FBgn0004652
D197R05	3R	18620560	G	'GAC'	CAGCGATAA	INS	TTATCGCTG	0.0725	strelka	upstream_gene_variant	MODIFIER	CG7695	intron	CG14304	FBgn0038629
D197R05	3R	19428251	CT	'C'	TGTCCTTTT	INS	TGTCCTTTT	0.104	strelka	upstream_gene_variant	MODIFIER	CG3517	intron	CG31221	FBgn0051221
D197R05	3R	20085385	C	'CG'	CATGCGGAT	INS	CATGCGGAT	0.0714	mutect2	upstream_gene_variant	MODIFIER	Rh3	intergenic	intergenic	intergenic
D197R05	3R	21551693	CGA	'C'	CGAACGAGA	INS	CGAACGAGA	0.0779	strelka	intron_variant	MODIFIER	slou	intron	slou	FBgn0002941
D197R05	3R	21650541	C	'CA'	GCGGCAAAA	INS	GCGGCAAAA	0.0962	strelka	downstream_gene_variant	MODIFIER	CR46057	intron	E2f1	FBgn0011766
D197R05	3R	21892792	A	'AT'	TGCCATTTT	INS	AAAATGGCA	0.0488	strelka	downstream_gene_variant	MODIFIER	CG43844	intron	CG6678	FBgn0038917
D197R05	3R	22158849	CACACACACAT	'C'	CACACACAC	INS	CACACACAC	0.0448	mutect2	intron_variant	MODIFIER	SKIP	intron	SKIP	FBgn0051163
D197R05	3R	22309261	GCT	'G'	TTCAGCTCT	INS	TTCAGCTCT	0.19	strelka	3_prime_UTR_variant	MODIFIER	CG34377	3UTR	CG34377	FBgn0263117
D197R05	3R	23056538	CA	'C'	GTTCCAAAA	INS	GTTCCAAAA	0.133	strelka	upstream_gene_variant	MODIFIER	p53	intron	CG17119	FBgn0039045
D197R05	3R	23194569	GT	'G'	TCGTGTTTT	INS	TCGTGTTTT	0.184	strelka	upstream_gene_variant	MODIFIER	cnc	intron	cnc	FBgn0262975
D197R05	3R	23941751	CA	'C'	GAAGCAAAA	INS	GAAGCAAAA	0.103	strelka	upstream_gene_variant	MODIFIER	Gdh	intron	Gdh	FBgn0001098
D197R05	3R	24015980	TTTTTTTTTC	'T'	TTTTTTTTT	INS	TTTTTTTTT	0.0968	mutect2	intron_variant	MODIFIER	KrT95D	intron	KrT95D	FBgn0020647
D197R05	3R	24971083	CAA	'C'	CACACAACC	INS	CACACAACC	0.0625	mutect2	intergenic_region	MODIFIER	CG13646-tnc	intergenic	intergenic	intergenic
D197R05	3R	26177100	A	'AT'	AGCCATTTT	INS	AAAATGGCT	0.0833	strelka	intron_variant	MODIFIER	CG31323	intron	CG31323	FBgn0051323
D197R05	3R	26337654	C	'CA'	CACTCAAAA	INS	CACTCAAAA	0.158	strelka	intron_variant	MODIFIER	CG33970	intron	CG33970	FBgn0053970
D197R05	3R	26430315	CT	'C'	CTCCCTTTT	INS	CTCCCTTTT	0.126	strelka	upstream_gene_variant	MODIFIER	CG34291	intergenic	intergenic	intergenic
D197R05	3R	26779756	C	'CTGTT'	TTCCCTATT	INS	TTCCCTATT	0.075	strelka	upstream_gene_variant	MODIFIER	CG42790	intergenic	intergenic	intergenic
D197R05	3R	29633578	T	'TTC'	ACTATTTTA	INS	ACTATTTTA	0.118	mutect2	intron_variant	MODIFIER	Dop1R2	intron	Dop1R2	FBgn0266137
D197R05	3R	29691292	CAG	'C'	ACGTCAGAG	INS	ACGTCAGAG	0.0543	strelka	upstream_gene_variant	MODIFIER	Obp99c	intergenic	intergenic	intergenic
D197R05	3R	30771457	AAAACAG	'A'	AAAAAAAAC	INS	AAAAAAAAC	0.124	mutect2	intron_variant	MODIFIER	zfh1	intron	zfh1	FBgn0004606
D197R05	3R	30804221	CGCGT	'C'	CGCGCGCGT	INS	CGCGCGCGT	0.0758	strelka	upstream_gene_variant	MODIFIER	dj-1beta	intron	wts	FBgn0011739
D197R05	X	1698489	TCGGC	'T'	GGGATCGGC	INS	GGGATCGGC	0.0667	mutect2	upstream_gene_variant	MODIFIER	a6	intergenic	intergenic	intergenic
D197R05	X	1990221	A	'AG'	AGAGAGGGG	INS	CCCCTCTCT	0.105	strelka	upstream_gene_variant	MODIFIER	Hr4	intron	Hr4	FBgn0264562
D197R05	X	2820736	ATG	'A'	CGACATGTG	INS	CGACATGTG	0.132	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
D197R05	X	2991729	GA	'G'	CCGCGAAAA	INS	CCGCGAAAA	0.138	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
D197R05	X	3369705	AGT	'A'	TGTGAGTGT	INS	TGTGAGTGT	0.175	strelka	upstream_gene_variant	MODIFIER	dm	intergenic	intergenic	intergenic
D197R05	X	3745599	A	'AT'	TTTCATTTT	INS	AAAATGAAA	0.106	strelka	upstream_gene_variant	MODIFIER	tlk	intron	Tlk	FBgn0283657
D197R05	X	3845099	G	'GT'	TTTTGTTTT	INS	AAAACAAAA	0.146	strelka	upstream_gene_variant	MODIFIER	ec	intron	ec	FBgn0000542
D197R05	X	4107308	TAC	'T'	TAGCTACAC	INS	TAGCTACAC	0.121	strelka	upstream_gene_variant	MODIFIER	Xpac	intron	cib	FBgn0026084
D197R05	X	4475771	TGCA	'T'	CACTTGCAG	INS	CACTTGCAG	0.0635	strelka	intron_variant	MODIFIER	CR32773	intron	bi	FBgn0000179
D197R05	X	4508615	C	'CT'	CGTCCTTTT	INS	CGTCCTTTT	0.108	strelka	intron_variant	MODIFIER	CR32773	ncRNA	CR32773	FBgn0052773
D197R05	X	5584382	G	'GT'	CTTCGTTTT	INS	AAAACGAAG	0.15	strelka	intergenic_region	MODIFIER	Vsx2-Vsx1	intergenic	intergenic	intergenic
D197R05	X	6050749	C	'CT'	ACAGCTTTT	INS	ACAGCTTTT	0.0833	strelka	upstream_gene_variant	MODIFIER	CG5921	intergenic	intergenic	intergenic
D197R05	X	6517680	GCA	'G'	AAATGCACA	INS	AAATGCACA	0.147	strelka	downstream_gene_variant	MODIFIER	tRNA:CR32748	intron	CG42340	FBgn0259242
D197R05	X	7756799	C	'CA'	CGCCCAAAA	INS	CGCCCAAAA	0.105	strelka	intergenic_region	MODIFIER	Tom40-Ir7a	intergenic	intergenic	intergenic
D197R05	X	7978023	GA	'G'	AGTCGAAAA	INS	AGTCGAAAA	0.13	strelka	intron_variant	MODIFIER	sn	intron	sn	FBgn0003447
D197R05	X	8081356	T	'TTC'	AGGTTTTTT	INS	AGGTTTTTT	0.167	strelka	upstream_gene_variant	MODIFIER	CR45535	intron	CG2254	FBgn0029994
D197R05	X	9406418	GCT	'G'	TATCGCTCT	INS	TATCGCTCT	0.111	strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
D197R05	X	9851342	CG	'C'	GAGGCGGGG	INS	GAGGCGGGG	0.093	strelka	3_prime_UTR_variant	MODIFIER	CG32698	3UTR	CG32698	FBgn0052698
D197R05	X	9966673	AAT	'A'	AACAAATGT	INS	AACAAATGT	0	consensus	3_prime_UTR_variant	MODIFIER	CG1889	3UTR	CG43386	FBgn0263216
D197R05	X	10414409	GA	'G'	AATGGAAAA	INS	AATGGAAAA	0.135	strelka	upstream_gene_variant	MODIFIER	RabX2	intron	CG32683	FBgn0052683
D197R05	X	10912787	GCAA	'G'	AGCAGCAAC	INS	AGCAGCAAC	0.0755	mutect2	disruptive_inframe_deletion	MODERATE	CG43901	exon_2	CG43901	FBgn0264502
D197R05	X	11968516	T	'TA'	AAATTTAAA	INS	AAATTTAAA	0.0968	strelka	intron_variant	MODIFIER	cac	intron	cac	FBgn0263111
D197R05	X	12045542	CA	'C'	ATAACAAAA	INS	ATAACAAAA	0.119	strelka	intron_variant	MODIFIER	CR43960	intron	Ten-a	FBgn0267001
D197R05	X	12871166	A	'AT'	CTTAATTTT	INS	AAAATTAAG	0.143	strelka	upstream_gene_variant	MODIFIER	Pde9	intron	Pde9	FBgn0259171
D197R05	X	13231383	C	'CA'	AAACCAAAA	INS	AAACCAAAA	0.179	strelka	downstream_gene_variant	MODIFIER	CG32639	intron	mew	FBgn0004456
D197R05	X	13344498	CT	'C'	CAGACTTTT	INS	CAGACTTTT	0.162	strelka	downstream_gene_variant	MODIFIER	CG15747	intergenic	intergenic	intergenic
D197R05	X	13844199	AAC	'A'	ACGCAACAC	INS	ACGCAACAC	0.188	strelka	upstream_gene_variant	MODIFIER	AMPdeam	intron	AMPdeam	FBgn0052626
D197R05	X	15044630	CT	'C'	TTCGCTTTT	INS	TTCGCTTTT	0.119	strelka	upstream_gene_variant	MODIFIER	CG5541	intron	CG5541	FBgn0030603
D197R05	X	15400817	G	'GT'	TCCTGTTTT	INS	AAAACAGGA	0.128	strelka	splice_region_variant&intron_variant	LOW	Cngl	intron	Cngl	FBgn0263257
D197R05	X	15482405	G	'GT'	ATTCGTTTT	INS	AAAACGAAT	0.114	strelka	5_prime_UTR_variant	MODIFIER	CG6340	5UTR	CG6340	FBgn0030648
D197R05	X	15615874	GT	'G'	TTACGTTTT	INS	TTACGTTTT	0.167	strelka	intron_variant	MODIFIER	sog	intron	sog	FBgn0003463
D197R05	X	15925640	TA	'T'	AAACTAAAA	INS	AAACTAAAA	0.162	strelka	downstream_gene_variant	MODIFIER	CG8916	intron	Lcch3	FBgn0010240
D197R05	X	16671664	C	'CA'	AAAACAAAA	INS	AAAACAAAA	0.143	strelka	downstream_gene_variant	MODIFIER	r	intron	CG13012	FBgn0030769
D197R05	X	18394020	A	'AT'	CTTTATTTT	INS	AAAATAAAG	0.172	strelka	downstream_gene_variant	MODIFIER	Tsf1	intron	CG32549	FBgn0052549
D197R05	X	18994515	GTGA	'G'	GATGGTGAT	INS	GATGGTGAT	0.069	strelka	intron_variant	MODIFIER	CG43759	intron	CG43759	FBgn0264090
D197R05	X	21226329	CA	'C'	CACACACAC	INS	CACACACAC	0	consensus	downstream_gene_variant	MODIFIER	tRNA:CR32518:Psi	intron	CG32521	FBgn0052521
D197R05	X	22431264	TTTCGATGTAAA	'T'	TCGCTTTCG	INS	TCGCTTTCG	0.254	strelka	intergenic_region	MODIFIER	CG41562-CG14621	intergenic	intergenic	intergenic
D197R05	Y	317320	GT	'G'	AACTGTTTT	INS	AACTGTTTT	0.135	strelka	intergenic_region	MODIFIER	PRY-CR45946	intergenic	intergenic	intergenic
D197R05	Y	2900736	G	'GTTTTT'	CAATGTTTC	INS	GAAACATTG	0.2	strelka	intergenic_region	MODIFIER	Su(Ste):CR42424-fdy	intergenic	intergenic	intergenic
D197R07	2L	826579	GCT	'G'	CTCGGCTCT	INS	CTCGGCTCT	0.157	strelka	upstream_gene_variant	MODIFIER	CG3862	intron	dock	FBgn0010583
D197R07	2L	1339488	C	'CT'	TTCCCTTTT	INS	TTCCCTTTT	0.08	strelka	upstream_gene_variant	MODIFIER	Cdlc2	intergenic	intergenic	intergenic
D197R07	2L	1592010	GT	'G'	AAACGTTTT	INS	AAACGTTTT	0.104	strelka	upstream_gene_variant	MODIFIER	CG10869	intron	haf	FBgn0261509
D197R07	2L	3039871	GT	'G'	AAGCGTTTT	INS	AAGCGTTTT	0.102	strelka	upstream_gene_variant	MODIFIER	CG17258	intergenic	intergenic	intergenic
D197R07	2L	3873199	GA	'G'	AAGGGATTG	INS	AAGGGATTG	0.058	strelka	frameshift_variant	HIGH	capu	exon_8	capu	FBgn0000256
D197R07	2L	4014610	GA	'G'	TTAGGAAAA	INS	TTAGGAAAA	0.0943	strelka	intergenic_region	MODIFIER	CG43774-ed	intergenic	intergenic	intergenic
D197R07	2L	4431860	CATAT	'C'	ATCGCATAT	INS	ATCGCATAT	0.15	strelka	upstream_gene_variant	MODIFIER	CG34177	intron	CG15431	FBgn0031602
D197R07	2L	9183384	ACGC	'A'	GACGACGCC	INS	GACGACGCC	0.0455	mutect2	intron_variant	MODIFIER	tai	intron	tai	FBgn0041092
D197R07	2L	9556375	CA	'C'	TTACCAAAA	INS	TTACCAAAA	0.0656	strelka	5_prime_UTR_variant	MODIFIER	jp	5UTR	jp	FBgn0032129
D197R07	2L	10164858	GA	'G'	CCTTGAAAA	INS	CCTTGAAAA	0.103	strelka	intron_variant	MODIFIER	CG44153	intron	CG44153	FBgn0265002
D197R07	2L	10522403	TGGCAGTGGGCGGTG	'T'	GGTTTGGCA	INS	GGTTTGGCA	0.0588	mutect2	downstream_gene_variant	MODIFIER	Lrr47	intergenic	intergenic	intergenic
D197R07	2L	10940497	GA	'G'	GTTTGAAAA	INS	GTTTGAAAA	0.12	strelka	downstream_gene_variant	MODIFIER	CG14072	intron	dpr2	FBgn0261871
D197R07	2L	11755482	CTG	'C'	CTTTCTGTG	INS	CTTTCTGTG	0.125	strelka	upstream_gene_variant	MODIFIER	CG42470	intergenic	intergenic	intergenic
D197R07	2L	12022129	G	'GA'	CCCCGAAAA	INS	TTTTCGGGG	0.0833	strelka	upstream_gene_variant	MODIFIER	CG6734	intergenic	intergenic	intergenic
D197R07	2L	12773077	TTG	'T'	TCGATTGTG	INS	TCGATTGTG	0.0714	strelka	intergenic_region	MODIFIER	CG15483-CR43818	intergenic	intergenic	intergenic
D197R07	2L	13277108	CAAT	'C'	CAAACAATA	INS	CAAACAATA	0.125	strelka	disruptive_inframe_deletion	MODERATE	CG44085	exon	CG44085	FBgn0264894
D197R07	2L	13560183	GT	'G'	TAGGGTTTT	INS	TAGGGTTTT	0.13	strelka	intron_variant	MODIFIER	kuz	intron	kuz	FBgn0259984
D197R07	2L	18373384	TA	'T'	TAATTAAAA	INS	TAATTAAAA	0.0526	strelka	intron_variant	MODIFIER	Fas3	intron	Fas3	FBgn0000636
D197R07	2L	19642263	GT	'G'	CTGTGTTTT	INS	CTGTGTTTT	0.178	strelka	downstream_gene_variant	MODIFIER	CR44979	intron	CG46244	FBgn0267964
D197R07	2L	19907039	GT	'G'	ATACGTTTT	INS	ATACGTTTT	0.0806	strelka	downstream_gene_variant	MODIFIER	CR43097	intron	sick	FBgn0263873
D197R07	2L	22981398	GT	'G'	AAATGTTTT	INS	AAATGTTTT	0.312	strelka	upstream_gene_variant	MODIFIER	cta	intergenic	intergenic	intergenic
D197R07	2R	1985646	GT	'G'	TTCGGTTTT	INS	TTCGGTTTT	0.111	strelka	intron_variant	MODIFIER	CG17684	intron	CG17684	FBgn0263780
D197R07	2R	3512598	CA	'C'	CCAGCAAAA	INS	CCAGCAAAA	0.208	strelka	intergenic_region	MODIFIER	CR45227-CR41501	intergenic	intergenic	intergenic
D197R07	2R	4290139	TTA	'T'	ACAATTATA	INS	ACAATTATA	0.273	strelka	intergenic_region	MODIFIER	IntS3-Gprk1	intergenic	intergenic	intergenic
D197R07	2R	5826506	C	'CTGGGA'	CATGCTGGG	INS	CATGCTGGG	0.211	strelka	intron_variant	MODIFIER	dpr12	intron	dpr12	FBgn0085414
D197R07	2R	7363446	T	'TCA'	TTGATCACA	INS	TTGATCACA	0.0417	mutect2	frameshift_variant	HIGH	Dscam1	exon_4	Dscam1	FBgn0033159
D197R07	2R	9069760	T	'TC'	ACGCTCCAC	INS	ACGCTCCAC	0.0667	strelka	intron_variant	MODIFIER	ana	intron	ana	FBgn0011746
D197R07	2R	9884452	TC	'T'	GAGGTCTAG	INS	GAGGTCTAG	0.0909	strelka	upstream_gene_variant	MODIFIER	Sec24AB	intron	CG1513	FBgn0033463
D197R07	2R	14000920	ACAGCGG	'A'	AACAACAGC	INS	AACAACAGC	0.0536	mutect2	downstream_gene_variant	MODIFIER	mir-4978	intron	mam	FBgn0002643
D197R07	2R	14235664	G	'GGT'	TTGTGGTGT	INS	ACACCACAA	0.0638	mutect2	upstream_gene_variant	MODIFIER	Opa1	intergenic	intergenic	intergenic
D197R07	2R	14819130	GA	'G'	AGATGAACC	INS	AGATGAACC	0.0794	mutect2,strelka	frameshift_variant	HIGH	CG10202	exon_1	CG10202	FBgn0033969
D197R07	2R	16841323	CA	'C'	AACCCAAAA	INS	AACCCAAAA	0.098	strelka	upstream_gene_variant	MODIFIER	CR44466	intergenic	intergenic	intergenic
D197R07	2R	17362131	CACA	'C'	CCACCACAA	INS	CCACCACAA	0.174	strelka	disruptive_inframe_deletion	MODERATE	mbl	exon	mbl	FBgn0265487
D197R07	2R	17960065	TA	'T'	CGAATAAAA	INS	CGAATAAAA	0.0962	strelka	upstream_gene_variant	MODIFIER	PpY-55A	intergenic	intergenic	intergenic
D197R07	2R	18720569	ATG	'A'	CGGTATGTG	INS	CGGTATGTG	0.1	strelka	downstream_gene_variant	MODIFIER	mir-4982	intron	Hs3st-A	FBgn0053147
D197R07	2R	18876236	GCAGCAACAGCAGAAGCAGCAA	'G'	TGCGGCAGC	INS	TGCGGCAGC	0.058	mutect2	upstream_gene_variant	MODIFIER	sano	intergenic	intergenic	intergenic
D197R07	2R	18894769	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.132	strelka	upstream_gene_variant	MODIFIER	snoRNA:Me28S-U1130	intron	sano	FBgn0034408
D197R07	2R	19456861	GCAA	'G'	GATGGCAAC	INS	GATGGCAAC	0.0725	strelka	5_prime_UTR_variant	MODIFIER	mei-W68	exon_1	par-1	FBgn0260934
D197R07	2R	19463116	TTG	'T'	GTGTTTGTG	INS	GTGTTTGTG	0.179	strelka	upstream_gene_variant	MODIFIER	par-1	intron	par-1	FBgn0260934
D197R07	2R	19810330	CAAG	'C'	GGACCAAGA	INS	GGACCAAGA	0.0845	strelka	intergenic_region	MODIFIER	tRNA:K2:56EF-Obp56h	intergenic	intergenic	intergenic
D197R07	2R	20909908	CT	'C'	TTAGCTTGG	INS	TTAGCTTGG	0.058	strelka	frameshift_variant	HIGH	CG9235	exon	CG9235	FBgn0034560
D197R07	2R	21523896	A	'ACACACG'	ACACACACA	INS	TGTGTGTGT	0.118	strelka	upstream_gene_variant	MODIFIER	CG10494	intron	Egfr	FBgn0003731
D197R07	2R	21578405	C	'CACACACAG'	CGCACACAC	INS	CGCACACAC	0.0323	mutect2	upstream_gene_variant	MODIFIER	CG10440	intergenic	intergenic	intergenic
D197R07	2R	21734855	G	'GGGGGGGGT'	GGGGGGTTT	INS	AAACCCCCC	0	consensus	intergenic_region	MODIFIER	CR44750-Grx-1	intergenic	intergenic	intergenic
D197R07	2R	22415270	GGT	'G'	TGGTGGTGT	INS	TGGTGGTGT	0.125	mutect2,strelka	frameshift_variant	HIGH	qkr58E-1	exon_1	qkr58E-1	FBgn0022986
D197R07	3L	4672739	A	'AGC'	CAGCAACAG	INS	CTGTTGCTG	0	consensus	intron_variant	MODIFIER	axo	intron	axo	FBgn0262870
D197R07	3L	4879321	TTG	'T'	TTTTTTGTT	INS	TTTTTTGTT	0.119	mutect2	intron_variant	MODIFIER	CG17150	intron	Dnah3	FBgn0035581
D197R07	3L	6075713	CA	'C'	TCTACAAAT	INS	TCTACAAAT	0.0656	strelka	upstream_gene_variant	MODIFIER	CG13295	intron	CG6610	FBgn0035675
D197R07	3L	7831438	GC	'G'	TGTTGCTGC	INS	TGTTGCTGC	0	consensus	frameshift_variant	HIGH	Pdp1	exon_2	Pdp1	FBgn0016694
D197R07	3L	7831440	TGC	'T'	TTGCTGCTG	INS	TTGCTGCTG	0	consensus	frameshift_variant	HIGH	Pdp1	exon_2	Pdp1	FBgn0016694
D197R07	3L	7853393	TC	'T'	TTTTTCTTT	INS	TTTTTCTTT	0.069	mutect2	5_prime_UTR_variant	MODIFIER	Pdp1	5UTR	Pdp1	FBgn0016694
D197R07	3L	7959127	AT	'A'	TTCGATTTG	INS	TTCGATTTG	0.222	strelka	intergenic_region	MODIFIER	exex-RNaseX25	intergenic	intergenic	intergenic
D197R07	3L	9148718	CTG	'C'	TTGTCTGTG	INS	TTGTCTGTG	0.238	strelka	3_prime_UTR_variant	MODIFIER	Rdl	3UTR	Rdl	FBgn0004244
D197R07	3L	9155409	AGAGG	'A'	AGAGAGAGG	INS	AGAGAGAGG	0.0769	strelka	intron_variant	MODIFIER	Rdl	intron	Rdl	FBgn0004244
D197R07	3L	9155410	GA	'G'	GAGAGAGGG	INS	GAGAGAGGG	0	consensus	intron_variant	MODIFIER	Rdl	intron	Rdl	FBgn0004244
D197R07	3L	9155412	GGGA	'G'	GAGAGGGAG	INS	GAGAGGGAG	0	consensus	intron_variant	MODIFIER	Rdl	intron	Rdl	FBgn0004244
D197R07	3L	11096193	A	'AT'	GACTATTTT	INS	AAAATAGTC	0.163	strelka	5_prime_UTR_variant	MODIFIER	CG6279	5UTR	CG6279	FBgn0036125
D197R07	3L	13305099	GT	'G'	TCTCGTTTT	INS	TCTCGTTTT	0.12	strelka	upstream_gene_variant	MODIFIER	CG43147	intergenic	intergenic	intergenic
D197R07	3L	13900012	GT	'G'	TAGGGTTTT	INS	TAGGGTTTT	0.0962	strelka	intron_variant	MODIFIER	dysc	intron	dysc	FBgn0264006
D197R07	3L	15863946	GT	'G'	ATTGGTTTT	INS	ATTGGTTTT	0.111	strelka	3_prime_UTR_variant	MODIFIER	pHCl	3UTR	pHCl	FBgn0264908
D197R07	3L	16956307	CTCT	'C'	ACCGCTCTT	INS	ACCGCTCTT	0.105	strelka	upstream_gene_variant	MODIFIER	Nc73EF	intron	Nc73EF	FBgn0010352
D197R07	3L	18998765	TC	'T'	AAATTCCGC	INS	AAATTCCGC	0.0606	strelka	frameshift_variant	HIGH	CG3808	exon	CG3808	FBgn0036838
D197R07	3L	19074138	GT	'G'	AATCGTTTT	INS	AATCGTTTT	0.0893	strelka	upstream_gene_variant	MODIFIER	Mkp3	intron	Mkp3	FBgn0036844
D197R07	3L	20783413	GA	'G'	TCCTGAAAA	INS	TCCTGAAAA	0.0471	mutect2	frameshift_variant	HIGH	CG11399	exon_2	CG11399	FBgn0037021
D197R07	3L	22055088	CT	'C'	CCCTCTAGT	INS	CCCTCTAGT	0.0615	strelka	intron_variant	MODIFIER	Oct-TyrR	intron	Oct-TyrR	FBgn0004514
D197R07	3L	23716500	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.0943	strelka	frameshift_variant	HIGH	CG17454	exon	CG17454	FBgn0039977
D197R07	3L	24458411	T	'TC'	GTTTTCACT	INS	GTTTTCACT	0.2	strelka	intergenic_region	MODIFIER	nvd-CR12460	intergenic	intergenic	intergenic
D197R07	3L	25674538	TA	'T'	AATGTAAAA	INS	AATGTAAAA	0.0909	strelka	upstream_gene_variant	MODIFIER	CG45782	intergenic	intergenic	intergenic
D197R07	3L	27278053	GT	'G'	AGTTGTTTT	INS	AGTTGTTTT	0.15	strelka	upstream_gene_variant	MODIFIER	Dbp80	intergenic	intergenic	intergenic
D197R07	3L	27908757	CT	'C'	AAACCTTTT	INS	AAACCTTTT	0.109	strelka	intergenic_region	MODIFIER	eIF-4B-CG17514	intergenic	intergenic	intergenic
D197R07	3R	12560	C	'CG'	GGACCAGTA	INS	GGACCAGTA	0.417	strelka	intergenic_region	MODIFIER	CHR_START-CR41571	intergenic	intergenic	intergenic
D197R07	3R	894944	CT	'C'	ATACCTTCC	INS	ATACCTTCC	0.0556	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R07	3R	1333571	GGAGCCACCTC	'G'	GCCTGGAGC	INS	GCCTGGAGC	0.0769	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R07	3R	2090499	TA	'T'	TTCTTAAAT	INS	TTCTTAAAT	0.31	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
D197R07	3R	2983546	T	'TC'	ATCATCCTC	INS	ATCATCCTC	0.0909	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
D197R07	3R	5078109	C	'CA'	TGTGCAAAA	INS	TGTGCAAAA	0.133	strelka	3_prime_UTR_variant	MODIFIER	corto	3UTR	corto	FBgn0010313
D197R07	3R	8669002	TTGTGCACTACAAAATATATAAAAAAAAAGGTA	'T'	TAAATTGTG	INS	TAAATTGTG	0.0625	mutect2	upstream_gene_variant	MODIFIER	tRNA:Y1:85Ac	intron	CG8036	FBgn0037607
D197R07	3R	8847751	A	'AAAG'	AAAAAAGAA	INS	TTCTTTTTT	0.148	strelka	upstream_gene_variant	MODIFIER	pyd	intron	pyd	FBgn0262614
D197R07	3R	8856168	AT	'A'	TCGCATTTT	INS	TCGCATTTT	0.0784	strelka	intron_variant	MODIFIER	pyd	intron	pyd	FBgn0262614
D197R07	3R	9977172	GAC	'G'	GGCAGACAC	INS	GGCAGACAC	0.156	strelka	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
D197R07	3R	10270562	G	'GA'	CACTGAAAA	INS	TTTTCAGTG	0.111	strelka	intron_variant	MODIFIER	CG43143	intron	CG43143	FBgn0262617
D197R07	3R	12189313	C	'CT'	TTGTCTGTT	INS	TTGTCTGTT	0.0847	mutect2	downstream_gene_variant	MODIFIER	CG4810	intergenic	intergenic	intergenic
D197R07	3R	12655020	GT	'G'	TTTGGTTTT	INS	TTTGGTTTT	0.125	strelka	downstream_gene_variant	MODIFIER	Dtg	intron	CG6225	FBgn0038072
D197R07	3R	14761793	G	'GA'	ACCCGAAAA	INS	TTTTCGGGT	0.0538	strelka	intron_variant	MODIFIER	jvl	intron	jvl	FBgn0263929
D197R07	3R	15136234	CTGT	'C'	GGCTCTGTT	INS	GGCTCTGTT	0.0714	strelka	conservative_inframe_deletion	MODERATE	CG6912	exon_4	CG6912	FBgn0038290
D197R07	3R	15351670	TC	'T'	AACCTCCTG	INS	AACCTCCTG	0.0769	strelka	frameshift_variant	HIGH	CG5038	exon	CG5038	FBgn0038324
D197R07	3R	16193835	GT	'G'	CTTCGTTTT	INS	CTTCGTTTT	0.116	strelka	upstream_gene_variant	MODIFIER	Bin1	intron	sra	FBgn0086370
D197R07	3R	16895585	G	'GT'	TTTTGTTTT	INS	AAAACAAAA	0.109	strelka	upstream_gene_variant	MODIFIER	iab-8	ncRNA	CR43617	FBgn0263595
D197R07	3R	17776456	AAG	'A'	GTGGAAGAG	INS	GTGGAAGAG	0.0976	strelka	upstream_gene_variant	MODIFIER	CG43102	intron	CG43102	FBgn0262562
D197R07	3R	17964279	GT	'G'	ATGCGTTTT	INS	ATGCGTTTT	0.0877	strelka	intron_variant	MODIFIER	cpo	intron	cpo	FBgn0263995
D197R07	3R	18417469	AGC	'A'	AGAGAGCGA	INS	AGAGAGCGA	0.0833	mutect2	upstream_gene_variant	MODIFIER	CG31122	intron	fru	FBgn0004652
D197R07	3R	19298562	TA	'T'	GTTGTAAAA	INS	GTTGTAAAA	0.104	strelka	upstream_gene_variant	MODIFIER	CG44174	intergenic	intergenic	intergenic
D197R07	3R	20436122	CTG	'C'	CAACCTGTG	INS	CAACCTGTG	0.0541	strelka	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
D197R07	3R	20616018	GT	'G'	TCTTGTTTT	INS	TCTTGTTTT	0.375	strelka	upstream_gene_variant	MODIFIER	CG5466	intron	CG15923	FBgn0038814
D197R07	3R	21570943	GT	'G'	TTTTGTTTT	INS	TTTTGTTTT	0.179	strelka	3_prime_UTR_variant	MODIFIER	InR	3UTR	InR	FBgn0283499
D197R07	3R	21825002	CA	'C'	CCCCCACCC	INS	CCCCCACCC	0	consensus	upstream_gene_variant	MODIFIER	CASK	intergenic	intergenic	intergenic
D197R07	3R	22168885	A	'AT'	TTTCATTTT	INS	AAAATGAAA	0.15	mutect2	intron_variant	MODIFIER	SKIP	intron	SKIP	FBgn0051163
D197R07	3R	24679951	CA	'C'	AAACCAAAA	INS	AAACCAAAA	0.132	strelka	intron_variant	MODIFIER	slo	intron	slo	FBgn0003429
D197R07	3R	25579830	T	'TCCCCCC'	CACTTCCCC	INS	CACTTCCCC	0.0435	mutect2	downstream_gene_variant	MODIFIER	CG4582	intron	msi	FBgn0011666
D197R07	3R	26556958	T	'TG'	TATATGTTT	INS	TATATGTTT	0.093	strelka	intron_variant	MODIFIER	scrib	intron	scrib	FBgn0263289
D197R07	3R	27802421	AT	'A'	ATCCATTCC	INS	ATCCATTCC	0	consensus	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
D197R07	3R	29047039	AC	'A'	AAAAACAAA	INS	AAAAACAAA	0.231	mutect2	3_prime_UTR_variant	MODIFIER	Pkc98E	3UTR	Pkc98E	FBgn0003093
D197R07	3R	29505293	C	'CCCCCA'	CCCCCCCCC	INS	CCCCCCCCC	0.0345	mutect2	upstream_gene_variant	MODIFIER	Trc8	intergenic	intergenic	intergenic
D197R07	3R	29794552	TTTTTTTG	'T'	CATTTTTTT	INS	CATTTTTTT	0.0909	mutect2	upstream_gene_variant	MODIFIER	sro	intergenic	intergenic	intergenic
D197R07	3R	30354523	TAC	'T'	TTTTTACTT	INS	TTTTTACTT	0.111	mutect2	upstream_gene_variant	MODIFIER	hdc	intron	hdc	FBgn0010113
D197R07	3R	30699873	TG	'T'	ATATTGGTA	INS	ATATTGGTA	0.0625	strelka	upstream_gene_variant	MODIFIER	CG12069	ncRNA	CR46115	FBgn0283501
D197R07	4	984200	CAT	'C'	TAAACATAT	INS	TAAACATAT	0.2	strelka	intergenic_region	MODIFIER	fuss-toy	intergenic	intergenic	intergenic
D197R07	X	508424	C	'CA'	CTAGCAAAA	INS	CTAGCAAAA	0.154	strelka	3_prime_UTR_variant	MODIFIER	svr	3UTR	svr	FBgn0004648
D197R07	X	1006117	G	'GT'	ATTGGTTTT	INS	AAAACCAAT	0.118	strelka	downstream_gene_variant	MODIFIER	TfIIA-S-2	intergenic	intergenic	intergenic
D197R07	X	1229390	GAC	'G'	TGGGGACAC	INS	TGGGGACAC	0.125	strelka	intron_variant	MODIFIER	CG3638	intron	CG3638	FBgn0261444
D197R07	X	1641707	CA	'C'	AACACAAAA	INS	AACACAAAA	0.121	strelka	intron_variant	MODIFIER	br	intron	br	FBgn0283451
D197R07	X	2141410	G	'GGT'	TGATGGAGG	INS	CCTCCATCA	0.167	mutect2	upstream_gene_variant	MODIFIER	ph-p	intergenic	intergenic	intergenic
D197R07	X	2258847	A	'ACACACG'	TCGCACACA	INS	TGTGTGCGA	0.0909	mutect2	upstream_gene_variant	MODIFIER	CG3091	intron	CG3078	FBgn0023524
D197R07	X	2332686	G	'GT'	TTTGGTTTT	INS	AAAACCAAA	0.156	strelka	5_prime_UTR_variant	MODIFIER	Ilp6	5UTR	Ilp6	FBgn0044047
D197R07	X	2862433	G	'GA'	GACAGAAAA	INS	TTTTCTGTC	0.182	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
D197R07	X	3010053	CAG	'C'	TATCCAGAG	INS	TATCCAGAG	0.158	strelka	intron_variant	MODIFIER	kirre	intron	kirre	FBgn0028369
D197R07	X	3308261	GCA	'G'	AAACGCACA	INS	AAACGCACA	0.185	strelka	intron_variant	MODIFIER	dnc	intron	dnc	FBgn0000479
D197R07	X	3390209	TCA	'T'	AAATTCACA	INS	AAATTCACA	0.158	strelka	3_prime_UTR_variant	MODIFIER	dm	3UTR	CG12535	FBgn0029657
D197R07	X	3873940	AAC	'A'	ACCAAACAC	INS	ACCAAACAC	0.114	strelka	upstream_gene_variant	MODIFIER	yin	intron	CG2930	FBgn0028491
D197R07	X	4191496	A	'AT'	TTTTATTTT	INS	AAAATAAAA	0.194	strelka	intron_variant	MODIFIER	Fas2	intron	Fas2	FBgn0000635
D197R07	X	5090653	AAG	'A'	AAAAAAGGA	INS	AAAAAAGGA	0.188	strelka	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
D197R07	X	5194754	T	'TCG'	TCTCTCTCT	INS	TCTCTCTCT	0	consensus	intron_variant	MODIFIER	rg	intron	CG15465	FBgn0029746
D197R07	X	5366768	GA	'G'	AAAAGAAAA	INS	AAAAGAAAA	0.154	strelka	intron_variant	MODIFIER	SK	intron	SK	FBgn0029761
D197R07	X	5828196	GAC	'G'	CACAGACAC	INS	CACAGACAC	0.143	strelka	upstream_gene_variant	MODIFIER	tRNA:CR32761:Psi	intron	CG15765	FBgn0029814
D197R07	X	5923840	G	'GT'	ACTTGTTTT	INS	AAAACAAGT	0.103	strelka	intron_variant	MODIFIER	CG3726	intron	CG3726	FBgn0029824
D197R07	X	6666300	GTA	'G'	ATATGTATA	INS	ATATGTATA	0.167	mutect2	upstream_gene_variant	MODIFIER	CG3224	intron	Ctr1A	FBgn0062413
D197R07	X	7020494	G	'GT'	TTTCGTTTT	INS	AAAACGAAA	0.16	strelka	downstream_gene_variant	MODIFIER	CG12541	intergenic	intergenic	intergenic
D197R07	X	7196122	TCA	'T'	ACACTCACA	INS	ACACTCACA	0.154	strelka	5_prime_UTR_variant	MODIFIER	CG9650	ncRNA	CR44357	FBgn0265457
D197R07	X	7345742	AT	'A'	TCTTATTTT	INS	TCTTATTTT	0.154	strelka	downstream_gene_variant	MODIFIER	CBP	intron	CG1677	FBgn0029941
D197R07	X	7755705	C	'CA'	CGGGCAAAA	INS	CGGGCAAAA	0.143	strelka	intergenic_region	MODIFIER	Tom40-Ir7a	intergenic	intergenic	intergenic
D197R07	X	7983197	G	'GT'	TTTTGTTTT	INS	AAAACAAAA	0.273	strelka	intron_variant	MODIFIER	sn	intron	sn	FBgn0003447
D197R07	X	8038357	GTTTT	'G'	GTGAGTTTT	INS	GTGAGTTTT	0.5	strelka	3_prime_UTR_variant	MODIFIER	fs(1)h	3UTR	fs(1)h	FBgn0004656
D197R07	X	8366281	GT	'G'	TTTCGTTTT	INS	TTTCGTTTT	0.235	strelka	intron_variant	MODIFIER	nAChRalpha3	intron	nAChRalpha3	FBgn0015519
D197R07	X	8471044	TA	'T'	TTGTTAAAA	INS	TTGTTAAAA	0.185	strelka	upstream_gene_variant	MODIFIER	CG12116	intron	Cp7Fa	FBgn0014464
D197R07	X	8789245	AC	'A'	AACCACCCC	INS	AACCACCCC	0.25	strelka	upstream_gene_variant	MODIFIER	Lim1	intron	Lim1	FBgn0026411
D197R07	X	9084033	GC	'G'	GGAGGCCTG	INS	GGAGGCCTG	0.1	strelka	frameshift_variant	HIGH	APC4	exon_4	APC4	FBgn0052707
D197R07	X	9100385	TA	'T'	GCATTAAAA	INS	GCATTAAAA	0.286	strelka	downstream_gene_variant	MODIFIER	Bx42	intron	CG7766	FBgn0030087
D197R07	X	9186183	GA	'G'	AAACGAAAA	INS	AAACGAAAA	0.121	strelka	3_prime_UTR_variant	MODIFIER	mei-P26	3UTR	mei-P26	FBgn0026206
D197R07	X	9424058	G	'GA'	TTGGGAAAA	INS	TTTTCCCAA	0.125	strelka	intron_variant	MODIFIER	mgl	intron	mgl	FBgn0261260
D197R07	X	10277434	C	'CA'	AAAACAAAA	INS	AAAACAAAA	0.19	strelka	3_prime_UTR_variant	MODIFIER	alpha-Man-I	3UTR	alpha-Man-Ia	FBgn0259170
D197R07	X	11156770	TC	'T'	TTCCTCGAT	INS	TTCCTCGAT	0.188	strelka	frameshift_variant	HIGH	CG32668	exon	CG32668	FBgn0052668
D197R07	X	11277920	GT	'G'	TTCTGTTTT	INS	TTCTGTTTT	0.172	strelka	intron_variant	MODIFIER	CG44422	intron	CG44422	FBgn0265595
D197R07	X	11396946	AT	'A'	GTGCATTTT	INS	GTGCATTTT	0.167	strelka	intron_variant	MODIFIER	dlg1	intron	dlg1	FBgn0001624
D197R07	X	11464975	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.146	strelka	intron_variant	MODIFIER	CG43155	intron	CG43155	FBgn0262685
D197R07	X	11916843	T	'TA'	ACACTCAAA	INS	ACACTCAAA	0.143	strelka	downstream_gene_variant	MODIFIER	CR32661	intron	pot	FBgn0250871
D197R07	X	12092759	AG	'A'	CGAGAGGGG	INS	CGAGAGGGG	0.125	strelka	downstream_gene_variant	MODIFIER	CR32658	intron	Ten-a	FBgn0267001
D197R07	X	12204483	CA	'C'	AAAGCAAAA	INS	AAAGCAAAA	0.174	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
D197R07	X	12315671	AT	'A'	AAAAATTTT	INS	AAAAATTTT	0.143	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
D197R07	X	12324457	GA	'G'	CACGGAAAA	INS	CACGGAAAA	0.0976	strelka	intron_variant	MODIFIER	Ten-a	intron	Ten-a	FBgn0267001
D197R07	X	12653344	CA	'C'	CCAACAAAA	INS	CCAACAAAA	0.167	strelka	3_prime_UTR_variant	MODIFIER	Tomosyn	3UTR	Tomosyn	FBgn0030412
D197R07	X	12699719	CGT	'C'	TCTGCGTGT	INS	TCTGCGTGT	0.111	strelka	intron_variant	MODIFIER	Smr	intron	Smr	FBgn0265523
D197R07	X	12721257	GCA	'G'	CAAGGCACA	INS	CAAGGCACA	0.2	strelka	upstream_gene_variant	MODIFIER	CR43963	ncRNA	CR43963	FBgn0264678
D197R07	X	12919100	TA	'T'	AAACTAAAA	INS	AAACTAAAA	0.333	strelka	5_prime_UTR_variant	MODIFIER	fne	exon_2	fne	FBgn0086675
D197R07	X	12954947	GCA	'G'	CGGGGCACA	INS	CGGGGCACA	0.103	strelka	upstream_gene_variant	MODIFIER	CG32642	intron	hec	FBgn0030437
D197R07	X	13115872	TAA	'T'	GGGCTAAAT	INS	GGGCTAAAT	0.148	strelka	upstream_gene_variant	MODIFIER	CG43313	intron	CG42237	FBgn0250862
D197R07	X	13381367	G	'GT'	TTCAGTTTT	INS	AAAACTGAA	0.107	strelka	upstream_gene_variant	MODIFIER	Tim9a	intron	Rbp1-like	FBgn0030479
D197R07	X	13489541	CA	'C'	AACACAAAA	INS	AACACAAAA	0.25	strelka	intron_variant	MODIFIER	Neto	intron	Neto	FBgn0265416
D197R07	X	13570586	A	'ATTT'	TTCCATTTT	INS	AAAATGGAA	0	consensus	intron_variant	MODIFIER	Tango13	intron	Tango13	FBgn0086674
D197R07	X	13653469	GCAA	'G'	AACAGCAAC	INS	AACAGCAAC	0.103	strelka	disruptive_inframe_deletion	MODERATE	NFAT	exon_4	NFAT	FBgn0030505
D197R07	X	13983401	TCA	'T'	ACACTCACA	INS	ACACTCACA	0.125	strelka	intron_variant	MODIFIER	mamo	intron	mamo	FBgn0267033
D197R07	X	14040537	G	'GT'	TTCTGTTTT	INS	AAAACAGAA	0.25	strelka	intergenic_region	MODIFIER	tRNA:S7:12Ed-Ste:CG33247	intergenic	intergenic	intergenic
D197R07	X	14433454	G	'GA'	GACGGAAAA	INS	TTTTCCGTC	0.167	strelka	intron_variant	MODIFIER	dpr8	intron	dpr8	FBgn0052600
D197R07	X	14573893	ATG	'A'	GTGCATGTG	INS	GTGCATGTG	0.121	strelka	intergenic_region	MODIFIER	CR45521-CG14414	intergenic	intergenic	intergenic
D197R07	X	14891247	GTTTTTTC	'G'	TATTGTTTT	INS	TATTGTTTT	0.231	mutect2	intron_variant	MODIFIER	Flo2	intron	CG9514	FBgn0030592
D197R07	X	15696020	A	'AT'	GCATATTTT	INS	AAAATATGC	0.154	strelka	upstream_gene_variant	MODIFIER	CR45524	intergenic	intergenic	intergenic
D197R07	X	16111068	AT	'A'	TTCCATTTT	INS	TTCCATTTT	0.15	strelka	intergenic_region	MODIFIER	CG42353-disco-r	intergenic	intergenic	intergenic
D197R07	X	16231511	CTG	'C'	GTTTCTGTG	INS	GTTTCTGTG	0.2	strelka	intergenic_region	MODIFIER	disco-snRNA:U5:14B	intergenic	intergenic	intergenic
D197R07	X	16531583	T	'TC'	CGCCTCCCC	INS	CGCCTCCCC	0.138	strelka	upstream_gene_variant	MODIFIER	para	intron	para	FBgn0264255
D197R07	X	16548169	CA	'C'	TTGGCAAAA	INS	TTGGCAAAA	0.333	strelka	upstream_gene_variant	MODIFIER	CG9902	intergenic	intergenic	intergenic
D197R07	X	16580423	GCA	'G'	CACAGCACA	INS	CACAGCACA	0.156	strelka	intron_variant	MODIFIER	CanA-14F	intron	CanA-14F	FBgn0267912
D197R07	X	17011017	CA	'C'	AGTCCAAGA	INS	AGTCCAAGA	0.129	strelka	intron_variant	MODIFIER	CG45002	intron	CG45002	FBgn0266354
D197R07	X	17694411	CA	'C'	AATACAAAA	INS	AATACAAAA	0.188	strelka	upstream_gene_variant	MODIFIER	chas	intron	chas	FBgn0263258
D197R07	X	17856384	CA	'C'	TTGCCAAAA	INS	TTGCCAAAA	0.138	strelka	upstream_gene_variant	MODIFIER	CG32554	intergenic	intergenic	intergenic
D197R07	X	18171709	ATC	'A'	CGCAATCTC	INS	CGCAATCTC	0.103	strelka	3_prime_UTR_variant	MODIFIER	Frq1	3UTR	Frq1	FBgn0030897
D197R07	X	18201671	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.0833	strelka	3_prime_UTR_variant	MODIFIER	Frq2	3UTR	Frq2	FBgn0083228
D197R07	X	18376292	GTGT	'G'	GATCGTGTT	INS	GATCGTGTT	0.115	strelka	3_prime_UTR_variant	MODIFIER	CrebB	3UTR	CrebB	FBgn0265784
D197R07	X	18659255	T	'TAC'	TTGCTACAC	INS	TTGCTACAC	0.08	strelka	frameshift_variant	HIGH	fu	exon_2	fu	FBgn0001079
D197R07	X	19359134	CCAA	'C'	AACACCAAC	INS	AACACCAAC	0.118	strelka	intron_variant	MODIFIER	kek5	intron	kek5	FBgn0031016
D197R07	X	19627961	T	'TC'	TTCTTATTT	INS	TTCTTATTT	0.161	strelka	3_prime_UTR_variant	MODIFIER	e(y)3	3UTR	e(y)3	FBgn0087008
D197R07	X	19818603	A	'AT'	GTATATTTT	INS	AAAATATAC	0.2	strelka	downstream_gene_variant	MODIFIER	SkpC	intergenic	intergenic	intergenic
D197R07	X	20350028	GT	'G'	GCTGGTTTT	INS	GCTGGTTTT	0.121	strelka	intergenic_region	MODIFIER	CG1504-CR46072	intergenic	intergenic	intergenic
D197R07	X	21433402	GCA	'G'	ACGCGCACA	INS	ACGCGCACA	0.13	strelka	upstream_gene_variant	MODIFIER	CG10918	intron	DIP-beta	FBgn0259245
D197R07	Y	1041120	GCGT	'G'	TCGAGCGTC	INS	TCGAGCGTC	0.167	strelka	upstream_gene_variant	MODIFIER	Su(Ste):CR45796	intergenic	intergenic	intergenic
HUM-1	2L	4055660	GT	'G'	TACCGTTTT	INS	TACCGTTTT	0.429	strelka	intron_variant	MODIFIER	ed	intron	ed	FBgn0000547
HUM-1	2L	4137417	GT	'G'	TGTGGTTTT	INS	TGTGGTTTT	0.167	strelka	intergenic_region	MODIFIER	Sr-CI-CG2955	intergenic	intergenic	intergenic
HUM-1	2L	4281802	TTG	'T'	TCTCTTGTG	INS	TCTCTTGTG	0.136	strelka	upstream_gene_variant	MODIFIER	Art2	intergenic	intergenic	intergenic
HUM-1	2L	6337979	CTGT	'C'	ATTGCTGTT	INS	ATTGCTGTT	0.222	strelka	upstream_gene_variant	MODIFIER	Cpr	intron	Pez	FBgn0031799
HUM-1	2L	6555725	A	'ATATG'	ATATATATA	INS	TATATATAT	0.308	strelka	3_prime_UTR_variant	MODIFIER	Osm6	3UTR	IFT52	FBgn0031829
HUM-1	2L	6888886	TTTTG	'T'	TTTTTTTTG	INS	TTTTTTTTG	0.15	strelka	intron_variant	MODIFIER	Nlg2	intron	Nlg2	FBgn0031866
HUM-1	2L	6931466	AAC	'A'	AACAAACAC	INS	AACAAACAC	0.353	strelka	3_prime_UTR_variant	MODIFIER	Hrb27C	exon_5	Hrb27C	FBgn0004838
HUM-1	2L	7102742	G	'GT'	TTAAGTTTT	INS	AAAACTTAA	0.214	strelka	intron_variant	MODIFIER	Pvf3	intron	Pvf3	FBgn0085407
HUM-1	2L	8471235	GT	'G'	AAAAGTTTT	INS	AAAAGTTTT	0.227	strelka	downstream_gene_variant	MODIFIER	fu2	intron	d	FBgn0262029
HUM-1	2L	8722195	CA	'C'	AATGCAAAA	INS	AATGCAAAA	0.267	strelka	intron_variant	MODIFIER	raw	intron	raw	FBgn0003209
HUM-1	2L	9299552	TA	'T'	GATTTAAAA	INS	GATTTAAAA	0.19	strelka	3_prime_UTR_variant	MODIFIER	Ggamma30A	3UTR	Ggamma30A	FBgn0267252
HUM-1	2L	9371641	CA	'C'	ACCCCAAAA	INS	ACCCCAAAA	0.222	strelka	3_prime_UTR_variant	MODIFIER	Shawl	3UTR	Shawl	FBgn0085395
HUM-1	2L	10166491	GCA	'G'	AACGGCACA	INS	AACGGCACA	0.188	strelka	intron_variant	MODIFIER	CG44153	intron	CG44153	FBgn0265002
HUM-1	2L	10524277	GA	'G'	AATGGAAAA	INS	AATGGAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	Lip4	intergenic	intergenic	intergenic
HUM-1	2L	11174160	CCAG	'C'	ACCACCAGC	INS	ACCACCAGC	0.214	strelka	upstream_gene_variant	MODIFIER	Vm32E	intron	Ca-beta	FBgn0259822
HUM-1	2L	11256043	TCAG	'T'	AGCATCAGC	INS	AGCATCAGC	0.158	strelka	conservative_inframe_deletion	MODERATE	ab	exon	ab	FBgn0264442
HUM-1	2L	11771341	ATG	'A'	CGGCATGTG	INS	CGGCATGTG	0.211	strelka	intergenic_region	MODIFIER	Sfp33A1-CG14931	intergenic	intergenic	intergenic
HUM-1	2L	11876038	A	'ACAAATTGTTCAAAGGAAGAT'	TATTATGCG	INS	CGCATAATA	0.5	strelka	upstream_gene_variant	MODIFIER	Pde1c	intron	Pde1c	FBgn0264815
HUM-1	2L	12485030	ATCGAAAT	'A'	TCATATCGA	INS	TCATATCGA	0.286	mutect2,strelka	upstream_gene_variant	MODIFIER	bun	intron	bun	FBgn0259176
HUM-1	2L	12573620	AT	'A'	CATTATTTT	INS	CATTATTTT	0.231	strelka	upstream_gene_variant	MODIFIER	CR44598	intergenic	intergenic	intergenic
HUM-1	2L	12797226	TTA	'T'	TTTTTTAAT	INS	TTTTTTAAT	0.13	strelka	intergenic_region	MODIFIER	CG15483-CR43818	intergenic	intergenic	intergenic
HUM-1	2L	12959762	CTG	'C'	GTGTCTGTG	INS	GTGTCTGTG	0.19	strelka	intergenic_region	MODIFIER	CR44183-CG16800	intergenic	intergenic	intergenic
HUM-1	2L	13740556	C	'CTA'	AGCACTATA	INS	AGCACTATA	0.231	strelka	downstream_gene_variant	MODIFIER	CG31813	intergenic	intergenic	intergenic
HUM-1	2L	13740556	CTA	'C'	AGCACTATA	INS	AGCACTATA	0.231	strelka	downstream_gene_variant	MODIFIER	CG31813	intergenic	intergenic	intergenic
HUM-1	2L	13869249	CA	'C'	GAGGCAAAA	INS	GAGGCAAAA	0.3	strelka	upstream_gene_variant	MODIFIER	CR44848	intron	CenG1A	FBgn0028509
HUM-1	2L	14482587	G	'GA'	GTAGGAAAA	INS	TTTTCCTAC	0.2	strelka	upstream_gene_variant	MODIFIER	CR44731	intergenic	intergenic	intergenic
HUM-1	2L	14641720	C	'CAT'	TAAACATAT	INS	TAAACATAT	0.188	strelka	intron_variant	MODIFIER	osp	intron	osp	FBgn0003016
HUM-1	2L	15289756	TCA	'T'	AACTTCAAA	INS	AACTTCAAA	0.167	strelka	upstream_gene_variant	MODIFIER	ms(2)35Ci	intergenic	intergenic	intergenic
HUM-1	2L	15777080	T	'TG'	GCTTTTTTA	INS	GCTTTTTTA	0.19	mutect2	upstream_gene_variant	MODIFIER	CG31826	intergenic	intergenic	intergenic
HUM-1	2L	15778312	AAC	'A'	GGCTAACAC	INS	GGCTAACAC	0.385	strelka	upstream_gene_variant	MODIFIER	CG43760	intergenic	intergenic	intergenic
HUM-1	2L	16629508	AT	'A'	TAATATTTT	INS	TAATATTTT	0.25	strelka	upstream_gene_variant	MODIFIER	CR44151	intron	CG42389	FBgn0259735
HUM-1	2L	16877709	TCA	'T'	CCTTTCACA	INS	CCTTTCACA	0.167	strelka	upstream_gene_variant	MODIFIER	CG31743	exon_2	CR31781	FBgn0051781
HUM-1	2L	16956583	GA	'G'	CGTGGAAAA	INS	CGTGGAAAA	0.176	strelka	intergenic_region	MODIFIER	CR44393-CR45285	intergenic	intergenic	intergenic
HUM-1	2L	22543605	T	'TA'	ACAATAAAA	INS	ACAATAAAA	0.235	strelka	downstream_gene_variant	MODIFIER	CG17490	ncRNA	CR46268	FBgn0278598
HUM-1	2R	1440296	AAAC	'A'	AGGAAAACA	INS	AGGAAAACA	0.3	strelka	intron_variant	MODIFIER	l(2)41Ab	intron	l(2)41Ab	FBgn0262123
HUM-1	2R	3877759	TA	'T'	AAGCTAAAA	INS	AAGCTAAAA	0.308	strelka	intergenic_region	MODIFIER	RYa-uex	intergenic	intergenic	intergenic
HUM-1	2R	5473111	GC	'G'	GACAGCGGC	INS	GACAGCGGC	0.308	strelka	intron_variant	MODIFIER	CG30440	intron	CG30440	FBgn0050440
HUM-1	2R	5670394	AT	'A'	TCGAATTTT	INS	TCGAATTTT	0.357	strelka	upstream_gene_variant	MODIFIER	kune	intergenic	intergenic	intergenic
HUM-1	2R	6042552	TTA	'T'	TTTTTTAAA	INS	TTTTTTAAA	0.214	strelka	5_prime_UTR_variant	MODIFIER	Tbce	exon_1	Tbce	FBgn0033055
HUM-1	2R	6243718	CA	'C'	CGATCAAAA	INS	CGATCAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	Pld	intron	Pld	FBgn0033075
HUM-1	2R	7082545	AT	'A'	CTCCATTTT	INS	CTCCATTTT	0.267	strelka	upstream_gene_variant	MODIFIER	esn	intergenic	intergenic	intergenic
HUM-1	2R	7188372	CGT	'C'	GTCCCGTGT	INS	GTCCCGTGT	0.286	strelka	downstream_gene_variant	MODIFIER	CG30384	intron	pk	FBgn0003090
HUM-1	2R	7760838	ACAG	'A'	GCAAACAGC	INS	GCAAACAGC	0.286	strelka	upstream_gene_variant	MODIFIER	CG30497	intron	CG30497	FBgn0050497
HUM-1	2R	8347571	CG	'C'	GTGCCGCTG	INS	GTGCCGCTG	0.25	mutect2,strelka	frameshift_variant	HIGH	pdm3	exon_2	pdm3	FBgn0261588
HUM-1	2R	8646688	A	'AT'	TTAAATTTT	INS	AAAATTTAA	0.286	strelka	upstream_gene_variant	MODIFIER	ptc	intergenic	intergenic	intergenic
HUM-1	2R	9407482	C	'CG'	ATCTCAAAT	INS	ATCTCAAAT	0.286	strelka	intron_variant	MODIFIER	wun	intron	wun	FBgn0016078
HUM-1	2R	9641134	TA	'T'	ATTGTAAAA	INS	ATTGTAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CR44070	intron	Mmp2	FBgn0033438
HUM-1	2R	10575328	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.2	strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
HUM-1	2R	12554669	AAAGT	'A'	AAAAAAAGT	INS	AAAAAAAGT	0	consensus	intron_variant	MODIFIER	fra	intron	fra	FBgn0011592
HUM-1	2R	12643389	GAA	'G'	CTGCGAAAA	INS	CTGCGAAAA	0.25	strelka	splice_region_variant&intron_variant	LOW	CG8785	intron	CG8785	FBgn0033760
HUM-1	2R	13682615	CT	'C'	ATCCCTTTT	INS	ATCCCTTTT	0.333	strelka	intron_variant	MODIFIER	fas	intron	fas	FBgn0000633
HUM-1	2R	13752917	GCAAA	'G'	AATAGCAAA	INS	AATAGCAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CG6280	intergenic	intergenic	intergenic
HUM-1	2R	14662880	GTA	'G'	TAGGGTATA	INS	TAGGGTATA	0.15	strelka	upstream_gene_variant	MODIFIER	Adgf-E	intergenic	intergenic	intergenic
HUM-1	2R	14934579	T	'TA'	TTTATAATT	INS	TTTATAATT	0.273	strelka	upstream_gene_variant	MODIFIER	CG10253	intron	ADPS	FBgn0033983
HUM-1	2R	14934586	TAGAG	'T'	TTTTTAGAG	INS	TTTTTAGAG	0.273	strelka	upstream_gene_variant	MODIFIER	CG10253	intron	ADPS	FBgn0033983
HUM-1	2R	14934593	T	'TTA'	AGAATCTTT	INS	AGAATCTTT	0.273	strelka	upstream_gene_variant	MODIFIER	CG10253	intron	ADPS	FBgn0033983
HUM-1	2R	16181540	AT	'A'	TATTATTTT	INS	TATTATTTT	0.286	strelka	5_prime_UTR_variant	MODIFIER	Lis-1	exon_1	Lis-1	FBgn0015754
HUM-1	2R	16381160	G	'GTCT'	GTTTGTCTT	INS	AAGACAAAC	0.158	strelka	3_prime_UTR_variant	MODIFIER	CG43187	3UTR	CG43187	FBgn0262816
HUM-1	2R	16389945	AGT	'A'	TGCCAGTGT	INS	TGCCAGTGT	0.231	strelka	downstream_gene_variant	MODIFIER	CG43187	intron	Sema-2b	FBgn0264273
HUM-1	2R	16480347	CTG	'C'	GTGGCTGTG	INS	GTGGCTGTG	0.25	strelka	downstream_gene_variant	MODIFIER	CG15712	intergenic	intergenic	intergenic
HUM-1	2R	18002103	GT	'G'	TATTGTTTT	INS	TATTGTTTT	0.364	strelka	upstream_gene_variant	MODIFIER	CR44419	intron	dpr13	FBgn0034286
HUM-1	2R	18099005	GA	'G'	GAGCGAAAA	INS	GAGCGAAAA	0.2	strelka	frameshift_variant	HIGH	CG5098	exon_4	CG5098	FBgn0034300
HUM-1	2R	18305872	ACTG	'A'	CACCACTGC	INS	CACCACTGC	0.15	strelka	upstream_gene_variant	MODIFIER	CG14505	intron	sbb	FBgn0010575
HUM-1	2R	19003254	CAT	'C'	GCAGCATAT	INS	GCAGCATAT	0.222	strelka	downstream_gene_variant	MODIFIER	tn	intron	tn	FBgn0265356
HUM-1	2R	20080675	CTA	'C'	AAAGCTATA	INS	AAAGCTATA	0.3	strelka	upstream_gene_variant	MODIFIER	CR44632	intergenic	intergenic	intergenic
HUM-1	2R	21533467	CT	'C'	GCATCTTTT	INS	GCATCTTTT	0.4	strelka	upstream_gene_variant	MODIFIER	CR44725	intron	Egfr	FBgn0003731
HUM-1	2R	22620106	CTA	'C'	AAATCTATA	INS	AAATCTATA	0.294	strelka	5_prime_UTR_variant	MODIFIER	CG33143	5UTR	CG33143	FBgn0053143
HUM-1	2R	23053776	AT	'A'	ATATATAAA	INS	ATATATAAA	0.188	strelka	upstream_gene_variant	MODIFIER	CG44252	intergenic	intergenic	intergenic
HUM-1	2R	24987394	A	'AT'	TCCTATTTT	INS	AAAATAGGA	0.333	strelka	upstream_gene_variant	MODIFIER	emp	intron	CG3829	FBgn0035091
HUM-1	3L	1138234	AAC	'A'	CACCAACAC	INS	CACCAACAC	0.176	strelka	downstream_gene_variant	MODIFIER	bab2	intergenic	intergenic	intergenic
HUM-1	3L	1468183	TC	'T'	GTAATCCCC	INS	GTAATCCCC	0.25	strelka	3_prime_UTR_variant	MODIFIER	rho	3UTR	rho	FBgn0004635
HUM-1	3L	2686119	TTG	'T'	GTCTTTGTG	INS	GTCTTTGTG	0.273	strelka	intron_variant	MODIFIER	Fife	intron	Fife	FBgn0264606
HUM-1	3L	2747079	AAC	'A'	ACAAAACAC	INS	ACAAAACAC	0.25	strelka	intron_variant	MODIFIER	Mrtf	intron	Mrtf	FBgn0052296
HUM-1	3L	4375715	AAC	'A'	ACATAACAC	INS	ACATAACAC	0.231	strelka	downstream_gene_variant	MODIFIER	CR44360	intron	DopEcR	FBgn0035538
HUM-1	3L	5731129	TA	'T'	AGGGTAAAA	INS	AGGGTAAAA	0.3	strelka	intron_variant	MODIFIER	sif	intron	sif	FBgn0085447
HUM-1	3L	5955147	AAGC	'A'	GAACAAGCA	INS	GAACAAGCA	0.231	strelka	upstream_gene_variant	MODIFIER	CG33993	intergenic	intergenic	intergenic
HUM-1	3L	6015090	CCA	'C'	GGTGCCACA	INS	GGTGCCACA	0.231	strelka	upstream_gene_variant	MODIFIER	alphaKap4	intron	PVRAP	FBgn0052406
HUM-1	3L	6450097	TA	'T'	TCTATAAAA	INS	TCTATAAAA	0.4	strelka	intron_variant	MODIFIER	CG42747	intron	CG42747	FBgn0261801
HUM-1	3L	6721446	CAT	'C'	CCAGCATAT	INS	CCAGCATAT	0.182	strelka	upstream_gene_variant	MODIFIER	ple	intergenic	intergenic	intergenic
HUM-1	3L	7628012	TA	'T'	CAATTAAAA	INS	CAATTAAAA	0.167	strelka	downstream_gene_variant	MODIFIER	CR45866	intron	Pura	FBgn0035802
HUM-1	3L	7756762	T	'TA'	GCATTAAAA	INS	GCATTAAAA	0.182	strelka	5_prime_UTR_variant	MODIFIER	CG32373	exon_1	CG32373	FBgn0052373
HUM-1	3L	7815552	C	'CT'	TTCTCTTTT	INS	TTCTCTTTT	0.25	strelka	3_prime_UTR_variant	MODIFIER	Pdp1	3UTR	Pdp1	FBgn0016694
HUM-1	3L	7927297	GT	'G'	CATGGTTTT	INS	CATGGTTTT	0.214	strelka	intron_variant	MODIFIER	syd	intron	syd	FBgn0024187
HUM-1	3L	8068352	T	'TA'	TAAATAAAA	INS	TAAATAAAA	0.333	strelka	upstream_gene_variant	MODIFIER	tRNA:CR32361	intron	Ect4	FBgn0262579
HUM-1	3L	8309175	CT	'C'	CAGCCTTTT	INS	CAGCCTTTT	0.267	strelka	upstream_gene_variant	MODIFIER	Gr66a	intergenic	intergenic	intergenic
HUM-1	3L	9681578	A	'ACGT'	TGAAACTTA	INS	TAAGTTTCA	0.231	strelka	upstream_gene_variant	MODIFIER	fry	intron	alphaTub67C	FBgn0087040
HUM-1	3L	9898297	GT	'G'	TTTGGTTTT	INS	TTTGGTTTT	0.375	strelka	5_prime_UTR_variant	MODIFIER	CG6707	5UTR	CG6707	FBgn0036058
HUM-1	3L	10388075	G	'GCTGCTGCTGCTGCTGCTGCAA'	ACATGTTGC	INS	GCAACATGT	0.333	strelka	downstream_gene_variant	MODIFIER	CR45245	intergenic	intergenic	intergenic
HUM-1	3L	10726438	GAC	'G'	CACGGACAC	INS	CACGGACAC	0.235	strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
HUM-1	3L	10798008	AGT	'A'	CAGAAGTGT	INS	CAGAAGTGT	0.267	strelka	upstream_gene_variant	MODIFIER	CG12523	ncRNA	CR46231	FBgn0267951
HUM-1	3L	10846033	GTC	'G'	TCGGGTCTC	INS	TCGGGTCTC	0.231	strelka	downstream_gene_variant	MODIFIER	CR45169	intergenic	intergenic	intergenic
HUM-1	3L	11360333	AGT	'A'	AGTAAGTGT	INS	AGTAAGTGT	0.211	strelka	upstream_gene_variant	MODIFIER	CR45036	intergenic	intergenic	intergenic
HUM-1	3L	11441815	CATT	'C'	GTTACATTA	INS	GTTACATTA	0.143	strelka	upstream_gene_variant	MODIFIER	CG7557	intergenic	intergenic	intergenic
HUM-1	3L	12423032	TTGC	'T'	ACTGTTGCT	INS	ACTGTTGCT	0.231	strelka	disruptive_inframe_deletion	MODERATE	toe	exon	toe	FBgn0036285
HUM-1	3L	13001717	AAC	'A'	GTCAAACAC	INS	GTCAAACAC	0.188	strelka	downstream_gene_variant	MODIFIER	CG11262	intergenic	intergenic	intergenic
HUM-1	3L	13188030	CT	'C'	TCCCCTTTT	INS	TCCCCTTTT	0.375	strelka	intergenic_region	MODIFIER	snky-CR45096	intergenic	intergenic	intergenic
HUM-1	3L	13502339	TTA	'T'	ATAATTATA	INS	ATAATTATA	0.25	strelka	3_prime_UTR_variant	MODIFIER	Tgi	3UTR	Tgi	FBgn0036373
HUM-1	3L	13939493	CTA	'C'	TTAGCTATA	INS	TTAGCTATA	0.333	strelka	downstream_gene_variant	MODIFIER	Gl	intron	CG32137	FBgn0052137
HUM-1	3L	14064788	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.286	strelka	intron_variant	MODIFIER	CG32138	intron	Frl	FBgn0267795
HUM-1	3L	14256367	C	'CT'	ATGTCTTTT	INS	ATGTCTTTT	0.19	strelka	intergenic_region	MODIFIER	CR44560-fz	intergenic	intergenic	intergenic
HUM-1	3L	14464792	CA	'C'	TAGCCAAAA	INS	TAGCCAAAA	0.25	strelka	intron_variant	MODIFIER	bbg	intron	bbg	FBgn0087007
HUM-1	3L	15546517	GCAGA	'G'	TATCGCAGA	INS	TATCGCAGA	0.15	strelka	intron_variant	MODIFIER	CrebA	intron	CrebA	FBgn0004396
HUM-1	3L	16530957	AAT	'A'	TACGAATAT	INS	TACGAATAT	0.286	strelka	intron_variant	MODIFIER	CG43373	intron	CG43373	FBgn0263131
HUM-1	3L	17699421	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.2	strelka	downstream_gene_variant	MODIFIER	CR45976	intron	Ccn	FBgn0052183
HUM-1	3L	17884842	AT	'A'	AACAATTTT	INS	AACAATTTT	0.25	strelka	upstream_gene_variant	MODIFIER	CG5506	intergenic	intergenic	intergenic
HUM-1	3L	18550021	A	'AT'	AGTAATTTT	INS	AAAATTACT	0.364	strelka	intergenic_region	MODIFIER	CG32198-AstC-R1	intergenic	intergenic	intergenic
HUM-1	3L	20890013	AT	'A'	TTTGATTTT	INS	TTTGATTTT	0.278	strelka	upstream_gene_variant	MODIFIER	CG32432	intergenic	intergenic	intergenic
HUM-1	3L	21224899	GCA	'G'	ACTCGCACA	INS	ACTCGCACA	0.176	strelka	upstream_gene_variant	MODIFIER	Eip78C	intergenic	intergenic	intergenic
HUM-1	3L	21924519	A	'AT'	CCAAATTTT	INS	AAAATTTGG	0.273	strelka	3_prime_UTR_variant	MODIFIER	mub	3UTR	mub	FBgn0262737
HUM-1	3L	22963128	AAT	'A'	CGAAAATAT	INS	CGAAAATAT	0.3	strelka	downstream_gene_variant	MODIFIER	CR45758	intergenic	intergenic	intergenic
HUM-1	3L	24402685	C	'CA'	TTCTCAAAA	INS	TTCTCAAAA	0.263	strelka	downstream_gene_variant	MODIFIER	nvd	intergenic	intergenic	intergenic
HUM-1	3L	24733328	T	'TA'	CTTGTAAAA	INS	CTTGTAAAA	0.375	strelka	intron_variant	MODIFIER	scro	intron	scro	FBgn0028993
HUM-1	3L	24750516	A	'AT'	TGTAATTTT	INS	AAAATTACA	0.267	strelka	intron_variant	MODIFIER	scro	intron	scro	FBgn0028993
HUM-1	3L	26543271	GTGGACTCCA	'G'	CTTGGTGGA	INS	CTTGGTGGA	0.231	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
HUM-1	3L	26671132	GAT	'G'	CGTGGATAT	INS	CGTGGATAT	0.3	strelka	intergenic_region	MODIFIER	CG42598-CG40228	intergenic	intergenic	intergenic
HUM-1	3L	27256542	CT	'C'	TGACCTTTT	INS	TGACCTTTT	0.385	strelka	intergenic_region	MODIFIER	CR43170-RpL15	intergenic	intergenic	intergenic
HUM-1	3R	1250316	CT	'C'	AGAGCTTCT	INS	AGAGCTTCT	0.133	mutect2	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
HUM-1	3R	2467624	CGTAGCT	'C'	TCAGCGTAG	INS	TCAGCGTAG	0.267	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
HUM-1	3R	2517671	TAGTCCGG	'T'	CCGGTAGTC	INS	CCGGTAGTC	0.12	strelka	intergenic_region	MODIFIER	CG45784-CG45783	intron	Myo81F	FBgn0267431
HUM-1	3R	2891582	TA	'T'	AGCTTAAAA	INS	AGCTTAAAA	0.375	strelka	intron_variant	MODIFIER	CG45783	intron	Pzl	FBgn0267430
HUM-1	3R	5633465	T	'TATAC'	TTAATATAC	INS	TTAATATAC	0.692	strelka	upstream_gene_variant	MODIFIER	CG12171	intergenic	intergenic	intergenic
HUM-1	3R	6080417	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.2	strelka	upstream_gene_variant	MODIFIER	Or83c	intergenic	intergenic	intergenic
HUM-1	3R	7197537	CTA	'C'	ATGCCTATA	INS	ATGCCTATA	0.333	strelka	upstream_gene_variant	MODIFIER	CG14609	intron	lap	FBgn0086372
HUM-1	3R	7461111	TGA	'T'	TTTCTGAGA	INS	TTTCTGAGA	0.231	strelka	intergenic_region	MODIFIER	tRNA:V3b:84Da-CR44934	intergenic	intergenic	intergenic
HUM-1	3R	8352165	A	'AAT'	ATACAATAT	INS	ATATTGTAT	0.267	strelka	3_prime_UTR_variant	MODIFIER	Atg13	3UTR	Atg13	FBgn0261108
HUM-1	3R	8449131	GTGGA	'G'	ATGGGTGGA	INS	ATGGGTGGA	0.273	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
HUM-1	3R	8485020	GA	'G'	GATTGAAAA	INS	GATTGAAAA	0.333	strelka	intergenic_region	MODIFIER	CG45263-Or85b	intergenic	intergenic	intergenic
HUM-1	3R	10584396	GT	'G'	GTTTGTTTT	INS	GTTTGTTTT	0.227	strelka	3_prime_UTR_variant	MODIFIER	hth	3UTR	hth	FBgn0001235
HUM-1	3R	10906815	CT	'C'	GTCTCTTTT	INS	GTCTCTTTT	0.192	strelka	intergenic_region	MODIFIER	CR45578-Tengl4	intergenic	intergenic	intergenic
HUM-1	3R	12449760	GTC	'G'	ATCCGTCTC	INS	ATCCGTCTC	0.273	strelka	upstream_gene_variant	MODIFIER	CG5509	intron	CG18549	FBgn0038053
HUM-1	3R	13242878	CTA	'C'	ATAACTATA	INS	ATAACTATA	0.267	strelka	intron_variant	MODIFIER	Ace	intron	Ace	FBgn0000024
HUM-1	3R	13322955	GT	'G'	TTTAGTTTT	INS	TTTAGTTTT	0.357	strelka	upstream_gene_variant	MODIFIER	CG45080	intergenic	intergenic	intergenic
HUM-1	3R	13787175	TTGC	'T'	TGTGTTGCT	INS	TGTGTTGCT	0.231	strelka	upstream_gene_variant	MODIFIER	CR45590	intergenic	intergenic	intergenic
HUM-1	3R	14880227	CA	'C'	CTGCCAAAA	INS	CTGCCAAAA	0.375	strelka	5_prime_UTR_variant	MODIFIER	CG3631	5UTR	CG3631	FBgn0038268
HUM-1	3R	15398450	A	'AT'	GTTTATTTT	INS	AAAATAAAC	0.19	strelka	upstream_gene_variant	MODIFIER	CR46058	intron	Rbp	FBgn0262483
HUM-1	3R	15665879	CT	'C'	TGCACTTTT	INS	TGCACTTTT	0.357	strelka	upstream_gene_variant	MODIFIER	pxb	intergenic	intergenic	intergenic
HUM-1	3R	17831007	A	'AT'	TGATATTTT	INS	AAAATATCA	0.211	strelka	intron_variant	MODIFIER	tinc	intron	tinc	FBgn0261649
HUM-1	3R	18445101	AGTGT	'A'	AATGAGTGT	INS	AATGAGTGT	0.3	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
HUM-1	3R	18612134	AT	'A'	CAACATTTT	INS	CAACATTTT	0.16	strelka	downstream_gene_variant	MODIFIER	CG7695	intron	CG14304	FBgn0038629
HUM-1	3R	18813173	AG	'A'	AAAAAGAAG	INS	AAAAAGAAG	0.273	strelka	intron_variant	MODIFIER	CG18208	intron	CG18208	FBgn0038653
HUM-1	3R	19408491	AT	'A'	TTAAATTTT	INS	TTAAATTTT	0.231	strelka	upstream_gene_variant	MODIFIER	CG11626	intergenic	intergenic	intergenic
HUM-1	3R	19616416	GTA	'G'	GTAGGTATA	INS	GTAGGTATA	0.214	strelka	3_prime_UTR_variant	MODIFIER	CG6231	3UTR	CG6231	FBgn0038720
HUM-1	3R	19980651	GAGTT	'G'	AGTAGAGTT	INS	AGTAGAGTT	0.25	mutect2	downstream_gene_variant	MODIFIER	CG31213	intron	Hs6st	FBgn0038755
HUM-1	3R	21060876	AAG	'A'	CAGAAAGAG	INS	CAGAAAGAG	0.2	strelka	upstream_gene_variant	MODIFIER	Mvl	intergenic	intergenic	intergenic
HUM-1	3R	21558085	ACT	'A'	TCGCACTCT	INS	TCGCACTCT	0.167	strelka	upstream_gene_variant	MODIFIER	slou	intergenic	intergenic	intergenic
HUM-1	3R	22040670	AT	'A'	ACACATTTT	INS	ACACATTTT	0.273	strelka	upstream_gene_variant	MODIFIER	how	intergenic	intergenic	intergenic
HUM-1	3R	22196048	CT	'C'	TGGCCTTTT	INS	TGGCCTTTT	0.222	strelka	intron_variant	MODIFIER	SKIP	ncRNA	CR45224	FBgn0266751
HUM-1	3R	22558815	CT	'C'	TTTTCTTTT	INS	TTTTCTTTT	0.231	strelka	3_prime_UTR_variant	MODIFIER	CG5278	3UTR	CG5278	FBgn0038986
HUM-1	3R	22635763	TG	'T'	TTTTTGTTT	INS	TTTTTGTTT	0.3	strelka	5_prime_UTR_variant	MODIFIER	loco	5UTR	loco	FBgn0020278
HUM-1	3R	23074461	AGT	'A'	TGTCAGTGT	INS	TGTCAGTGT	0.214	strelka	intron_variant	MODIFIER	CG13830	intron	Cow	FBgn0039054
HUM-1	3R	23802576	ATG	'A'	CAAGATGTG	INS	CAAGATGTG	0.333	strelka	upstream_gene_variant	MODIFIER	CG34355	intron	CG33111	FBgn0053111
HUM-1	3R	23985261	CAT	'C'	AATACATAT	INS	AATACATAT	0.174	strelka	3_prime_UTR_variant	MODIFIER	CG13603	3UTR	CG13603	FBgn0039135
HUM-1	3R	24459080	GA	'G'	TTTTGAAAA	INS	TTTTGAAAA	0.222	strelka	upstream_gene_variant	MODIFIER	nAChRalpha1	intergenic	intergenic	intergenic
HUM-1	3R	24710349	T	'TCA'	ACATTCACA	INS	ACATTCACA	0.176	strelka	3_prime_UTR_variant	MODIFIER	slo	3UTR	slo	FBgn0003429
HUM-1	3R	25189232	TAC	'T'	TGTATACAC	INS	TGTATACAC	0.273	strelka	intron_variant	MODIFIER	lobo	intron	dan	FBgn0039286
HUM-1	3R	25521420	GA	'G'	AACTGAAAA	INS	AACTGAAAA	0.333	strelka	intron_variant	MODIFIER	msi	intron	msi	FBgn0011666
HUM-1	3R	25710572	AAC	'A'	TGCCAACAC	INS	TGCCAACAC	0.308	strelka	intron_variant	MODIFIER	LpR2	intron	LpR2	FBgn0051092
HUM-1	3R	26237530	GTA	'G'	TAATGTATA	INS	TAATGTATA	0.167	strelka	upstream_gene_variant	MODIFIER	CR46062	ncRNA	CR46061	FBgn0267730
HUM-1	3R	26291910	AAC	'A'	AGCCAACAC	INS	AGCCAACAC	0.136	strelka	intergenic_region	MODIFIER	CG6154-CG33970	intergenic	intergenic	intergenic
HUM-1	3R	27511648	CGT	'C'	CGTGCGTGT	INS	CGTGCGTGT	0.176	strelka	downstream_gene_variant	MODIFIER	CG13972	intergenic	intergenic	intergenic
HUM-1	3R	27815848	AT	'A'	TTGTATTTT	INS	TTGTATTTT	0.25	strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
HUM-1	3R	27976288	GT	'G'	CTGTGTGTG	INS	CTGTGTGTG	0.231	mutect2	intron_variant	MODIFIER	betaTub97EF	intron	betaTub97EF	FBgn0003890
HUM-1	3R	27997583	CT	'C'	GCTCCTTTT	INS	GCTCCTTTT	0.2	strelka	downstream_gene_variant	MODIFIER	CR46087	intergenic	intergenic	intergenic
HUM-1	3R	28273958	GCA	'G'	CAGAGCACA	INS	CAGAGCACA	0.176	strelka	intergenic_region	MODIFIER	CG43124-CG34436	intergenic	intergenic	intergenic
HUM-1	3R	29604436	CA	'C'	TTTGCAAAA	INS	TTTGCAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG7568	intron	alph	FBgn0086361
HUM-1	3R	29606458	CGT	'C'	TCCCCGTGT	INS	TCCCCGTGT	0.267	strelka	upstream_gene_variant	MODIFIER	Diedel2	intron	alph	FBgn0086361
HUM-1	3R	30083776	AATGTGAACC	'A'	AGGGAATGT	INS	AGGGAATGT	0.3	strelka	intron_variant	MODIFIER	sima	intron	sima	FBgn0266411
HUM-1	3R	31141748	CT	'C'	TCGTCTTTT	INS	TCGTCTTTT	0.273	strelka	intron_variant	MODIFIER	Gycbeta100B	intron	Gycbeta100B	FBgn0013973
HUM-1	3R	31229586	G	'GA'	ATTTGAAAA	INS	TTTTCAAAT	0.261	strelka	3_prime_UTR_variant	MODIFIER	CG12054	3UTR	CG12054	FBgn0039831
HUM-1	X	1264774	C	'CT'	TGGCCTTTT	INS	TGGCCTTTT	0.571	strelka	intron_variant	MODIFIER	Atf3	intron	Atf3	FBgn0028550
HUM-1	X	3552932	T	'TTTTA'	TATTTTTTA	INS	TATTTTTTA	0.333	strelka	upstream_gene_variant	MODIFIER	ppk8	intron	DIP-alpha	FBgn0052791
HUM-1	X	8114343	CCA	'C'	AAAACCACA	INS	AAAACCACA	0.188	strelka	upstream_gene_variant	MODIFIER	CG1575	intron	Gclc	FBgn0040319
HUM-1	X	10048991	G	'GA'	TGACGAAAA	INS	TTTTCGTCA	0.3	strelka	upstream_gene_variant	MODIFIER	CR45185	intron	Cht6	FBgn0263132
HUM-1	X	15309639	CACAT	'C'	TGGGCACAT	INS	TGGGCACAT	0.333	strelka	intron_variant	MODIFIER	gce	intron	gce	FBgn0261703
HUM-1	X	20998962	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.75	strelka	intergenic_region	MODIFIER	CG11666-r-cup	intergenic	intergenic	intergenic
HUM-4	2L	873957	CCGT	'C'	GCCGCCGTC	INS	GCCGCCGTC	0.25	strelka	3_prime_UTR_variant	MODIFIER	PNUTS	3UTR	PNUTS	FBgn0053526
HUM-4	2L	3152811	TTGAC	'T'	TTGATTGAC	INS	TTGATTGAC	0.231	strelka	upstream_gene_variant	MODIFIER	Mad	intron	Mad	FBgn0011648
HUM-4	2L	5076223	CAA	'C'	AACACAAAA	INS	AACACAAAA	0.286	strelka	downstream_gene_variant	MODIFIER	RpL37A	intron	pgant5	FBgn0031681
HUM-4	2L	6568366	GATA	'G'	AAAAGATAA	INS	AAAAGATAA	0.138	strelka	upstream_gene_variant	MODIFIER	CG13766	intergenic	intergenic	intergenic
HUM-4	2L	8615378	A	'AG'	AAAAAAGAT	INS	ATCTTTTTT	0.188	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31602	intron	Sema-1a	FBgn0011259
HUM-4	2L	9688438	GATAT	'G'	CATCGATAT	INS	CATCGATAT	0.188	strelka	intron_variant	MODIFIER	Pka-C1	intron	Pka-C1	FBgn0000273
HUM-4	2L	11034454	AT	'A'	TTATATTTT	INS	TTATATTTT	0.185	strelka	upstream_gene_variant	MODIFIER	CG18666	intron	Samuel	FBgn0032330
HUM-4	2L	11489554	A	'ATCCT'	ATATATATA	INS	TATATATAT	0.0357	mutect2	downstream_gene_variant	MODIFIER	CG43355	intergenic	intergenic	intergenic
HUM-4	2L	11748932	T	'TTC'	TATTTCTTT	INS	TATTTCTTT	0.167	strelka	upstream_gene_variant	MODIFIER	CR44144	intergenic	intergenic	intergenic
HUM-4	2L	12623894	ATG	'A'	GTGTATGTG	INS	GTGTATGTG	0.192	strelka	intron_variant	MODIFIER	nub	intron	Ref2	FBgn0032439
HUM-4	2L	14271530	AT	'A'	AATAATTTT	INS	AATAATTTT	0.267	strelka	upstream_gene_variant	MODIFIER	CG32971	intron	wb	FBgn0261563
HUM-4	2L	15652290	AT	'A'	TATAATTTT	INS	TATAATTTT	0.231	strelka	intron_variant	MODIFIER	CG4587	intron	CG4587	FBgn0028863
HUM-4	2L	16641797	CA	'C'	AACACAAAA	INS	AACACAAAA	0.278	strelka	intron_variant	MODIFIER	CG42389	intron	CG42389	FBgn0259735
HUM-4	2L	16954083	CT	'C'	AAATCTTTT	INS	AAATCTTTT	0.133	strelka	upstream_gene_variant	MODIFIER	CR44393	intergenic	intergenic	intergenic
HUM-4	2L	17866973	CAT	'C'	GGTTCATAT	INS	GGTTCATAT	0.333	strelka	intron_variant	MODIFIER	CadN2	intron	CadN2	FBgn0262018
HUM-4	2L	19602530	ATG	'A'	GTGTATGTG	INS	GTGTATGTG	0.167	strelka	upstream_gene_variant	MODIFIER	Lar	exon_3	CR44978	FBgn0266313
HUM-4	2L	19625152	GGT	'G'	TTAAGGTGT	INS	TTAAGGTGT	0.188	strelka	intron_variant	MODIFIER	Lar	intron	CG46244	FBgn0267964
HUM-4	2R	5036564	CT	'C'	CCTTCTTTT	INS	CCTTCTTTT	0.143	strelka	upstream_gene_variant	MODIFIER	CR44105	intergenic	intergenic	intergenic
HUM-4	2R	9167549	CA	'C'	ATACCAAAA	INS	ATACCAAAA	0.2	strelka	3_prime_UTR_variant	MODIFIER	Rad51C	3UTR	Rad51D	FBgn0033389
HUM-4	2R	10554113	CAG	'C'	GAGACAGAG	INS	GAGACAGAG	0.214	strelka	upstream_gene_variant	MODIFIER	psq	intergenic	intergenic	intergenic
HUM-4	2R	11449339	GA	'G'	CCAAGAAAA	INS	CCAAGAAAA	0.176	strelka	3_prime_UTR_variant	MODIFIER	qvr	3UTR	qvr	FBgn0260499
HUM-4	2R	13824257	AAC	'A'	CGCAAACAC	INS	CGCAAACAC	0.211	strelka	5_prime_UTR_variant	MODIFIER	fl(2)d	5UTR	fl(2)d	FBgn0000662
HUM-4	2R	14029340	GTA	'G'	ATATGTATA	INS	ATATGTATA	0.13	strelka	upstream_gene_variant	MODIFIER	mam	intron	mam	FBgn0002643
HUM-4	2R	20647337	TTG	'T'	TCCGTTGTG	INS	TCCGTTGTG	0.5	strelka	upstream_gene_variant	MODIFIER	CG33785	intron	Lrt	FBgn0034540
HUM-4	2R	20948450	GCA	'G'	ACGCGCACA	INS	ACGCGCACA	0.455	strelka	upstream_gene_variant	MODIFIER	CG33704	intergenic	intergenic	intergenic
HUM-4	2R	21364129	ATG	'A'	ACATATGTG	INS	ACATATGTG	0.158	strelka	intron_variant	MODIFIER	cv-2	intron	cv-2	FBgn0000395
HUM-4	2R	21453436	AAC	'A'	CTGCAACAC	INS	CTGCAACAC	0.188	strelka	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
HUM-4	2R	21474337	GA	'G'	AACGGAAAA	INS	AACGGAAAA	0.158	strelka	intron_variant	MODIFIER	Sdc	intron	Sdc	FBgn0010415
HUM-4	2R	23316475	AGT	'A'	TAGGAGTGT	INS	TAGGAGTGT	0.25	strelka	upstream_gene_variant	MODIFIER	HP1Lcsd	intergenic	intergenic	intergenic
HUM-4	2R	24303581	CCA	'C'	AAATCCACA	INS	AAATCCACA	0.25	strelka	upstream_gene_variant	MODIFIER	betaTub60D	intergenic	intergenic	intergenic
HUM-4	3L	685286	CTG	'C'	CCGCCTGTG	INS	CCGCCTGTG	0.15	strelka	5_prime_UTR_variant	MODIFIER	ebd1	5UTR	ebd1	FBgn0035153
HUM-4	3L	920986	TCA	'T'	ATACTCACA	INS	ATACTCACA	0.125	strelka	intron_variant	MODIFIER	Glut1	intron	Glut1	FBgn0264574
HUM-4	3L	2220224	GTT	'G'	ATGAGTTTA	INS	ATGAGTTTA	0.25	strelka	intergenic_region	MODIFIER	CG15878-Oseg2	intergenic	intergenic	intergenic
HUM-4	3L	3308119	AAT	'A'	TATAAATAT	INS	TATAAATAT	0.167	strelka	5_prime_UTR_variant	MODIFIER	ZnT63C	exon_1	ZnT63C	FBgn0035432
HUM-4	3L	4091692	CAT	'C'	ACATCATAT	INS	ACATCATAT	0.235	strelka	3_prime_UTR_variant	MODIFIER	CG14989	3UTR	CG14989	FBgn0035495
HUM-4	3L	4434135	CA	'C'	ATGTCAAAA	INS	ATGTCAAAA	0.273	strelka	upstream_gene_variant	MODIFIER	CG15021	intron	nAChRbeta1	FBgn0000038
HUM-4	3L	4492156	G	'GA'	AACAGAAAA	INS	TTTTCTGTT	0.4	strelka	upstream_gene_variant	MODIFIER	CG13722	intergenic	intergenic	intergenic
HUM-4	3L	4612795	G	'GA'	ACTTGAAAA	INS	TTTTCAAGT	0.174	strelka	intron_variant	MODIFIER	Src64B	intron	Src64B	FBgn0262733
HUM-4	3L	5858995	GTA	'G'	GTGTGTATA	INS	GTGTGTATA	0.125	strelka	intergenic_region	MODIFIER	vn-CG5568	intergenic	intergenic	intergenic
HUM-4	3L	6637470	CAT	'C'	TATACATAT	INS	TATACATAT	0.176	strelka	upstream_gene_variant	MODIFIER	CR45238	intergenic	intergenic	intergenic
HUM-4	3L	7135073	AT	'A'	GTTGATTTT	INS	GTTGATTTT	0.3	strelka	5_prime_UTR_variant	MODIFIER	melt	exon_1	melt	FBgn0023001
HUM-4	3L	8518575	T	'TA'	CAATTAAAA	INS	CAATTAAAA	0.25	strelka	3_prime_UTR_variant	MODIFIER	CG6765	3UTR	CG6765	FBgn0035903
HUM-4	3L	8991576	CTG	'C'	CGATCTGTG	INS	CGATCTGTG	0.214	strelka	upstream_gene_variant	MODIFIER	CG5280	intron	smg	FBgn0016070
HUM-4	3L	9469888	TG	'T'	GGAATGGGG	INS	GGAATGGGG	0.136	strelka	intron_variant	MODIFIER	CG44838	intron	CG44838	FBgn0266101
HUM-4	3L	10030221	T	'TTA'	ATACTTATA	INS	ATACTTATA	0.12	strelka	upstream_gene_variant	MODIFIER	CR45155	intron	dpr6	FBgn0040823
HUM-4	3L	10315529	CCAG	'C'	TTGTCCAGC	INS	TTGTCCAGC	0.13	strelka	upstream_gene_variant	MODIFIER	mir-276b	exon_2	CR46004	FBgn0267666
HUM-4	3L	13710942	AT	'A'	TATCATTTT	INS	TATCATTTT	0.273	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
HUM-4	3L	14230003	CAT	'C'	ACACCATAT	INS	ACACCATAT	0.176	strelka	5_prime_UTR_variant	MODIFIER	nuf	5UTR	nuf	FBgn0013718
HUM-4	3L	14766361	A	'AAT'	GTATAATAT	INS	ATATTATAC	0.273	strelka	3_prime_UTR_variant	MODIFIER	CG9384	3UTR	CG9384	FBgn0036446
HUM-4	3L	15178829	ATG	'A'	GTGTATGTG	INS	GTGTATGTG	0.214	strelka	intergenic_region	MODIFIER	CG7011-CR44562	intergenic	intergenic	intergenic
HUM-4	3L	17261450	CA	'C'	CCAACAAAA	INS	CCAACAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	CG13723	ncRNA	CR43870	FBgn0264462
HUM-4	3L	17462703	AAC	'A'	CACAAACAC	INS	CACAAACAC	0.174	strelka	upstream_gene_variant	MODIFIER	CG7603	intergenic	intergenic	intergenic
HUM-4	3L	17706489	AG	'A'	AAAAAGGGG	INS	AAAAAGGGG	0.136	strelka	intron_variant	MODIFIER	Ccn	intron	Ccn	FBgn0052183
HUM-4	3L	18735031	GA	'G'	TTTCGAAAA	INS	TTTCGAAAA	0.25	strelka	intergenic_region	MODIFIER	CR43985-CG6885	intergenic	intergenic	intergenic
HUM-4	3L	20204793	C	'CAGAGGAAGTCGAGCCGGAGGAAGTTGACCT'	GAGCCAGAG	INS	GAGCCAGAG	0	consensus	conservative_inframe_insertion	MODERATE	CG7290	exon	CG7290	FBgn0036949
HUM-4	3L	21036070	A	'AT'	ATTGATTTT	INS	AAAATCAAT	0.211	strelka	upstream_gene_variant	MODIFIER	CG10584	intron	siz	FBgn0026179
HUM-4	3L	21270960	CAT	'C'	ATAACATAT	INS	ATAACATAT	0.227	strelka	3_prime_UTR_variant	MODIFIER	AcCoAS	3UTR	AcCoAS	FBgn0012034
HUM-4	3L	22168574	TCA	'T'	CCTGTCACA	INS	CCTGTCACA	0.15	strelka	intron_variant	MODIFIER	olf413	intron	olf413	FBgn0037153
HUM-4	3L	22843439	CA	'C'	GCAACAAAA	INS	GCAACAAAA	0.267	strelka	downstream_gene_variant	MODIFIER	CR45659	intergenic	intergenic	intergenic
HUM-4	3L	24366016	CA	'C'	GGCTCAAAA	INS	GGCTCAAAA	0.211	strelka	frameshift_variant	HIGH	nvd	exon_3	nvd	FBgn0259697
HUM-4	3R	1497694	CA	'C'	GACACAAAA	INS	GACACAAAA	0.429	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
HUM-4	3R	4351185	G	'GT'	CAAAGTTTT	INS	AAAACTTTG	0.179	strelka	upstream_gene_variant	MODIFIER	hkb	intergenic	intergenic	intergenic
HUM-4	3R	4474772	CT	'C'	AAATCTTTT	INS	AAATCTTTT	0.16	strelka	upstream_gene_variant	MODIFIER	CG31523	intron	CG31523	FBgn0051523
HUM-4	3R	4562189	GA	'G'	ATGAGAAAA	INS	ATGAGAAAA	0.143	strelka	upstream_gene_variant	MODIFIER	CG34357	intergenic	intergenic	intergenic
HUM-4	3R	5083823	TAACTTTTAG	'T'	TGTGTAACT	INS	TGTGTAACT	0.294	mutect2,strelka	3_prime_UTR_variant	MODIFIER	corto	3UTR	corto	FBgn0010313
HUM-4	3R	5638820	AAT	'A'	ATATAATAT	INS	ATATAATAT	0.19	strelka	3_prime_UTR_variant	MODIFIER	MTA1-like	3UTR	MTA1-like	FBgn0027951
HUM-4	3R	7197537	C	'CTA'	ATGCCTATA	INS	ATGCCTATA	0.25	strelka	upstream_gene_variant	MODIFIER	CG14609	intron	lap	FBgn0086372
HUM-4	3R	8660027	CT	'C'	GTTGCTTTT	INS	GTTGCTTTT	0.273	strelka	5_prime_UTR_variant	MODIFIER	bel	5UTR	bel	FBgn0263231
HUM-4	3R	9056220	CCA	'C'	TATGCCACA	INS	TATGCCACA	0.188	strelka	downstream_gene_variant	MODIFIER	Mst85C	intron	Kdm2	FBgn0037659
HUM-4	3R	9901700	AGT	'A'	AGCAAGTGT	INS	AGCAAGTGT	0.214	strelka	intron_variant	MODIFIER	Glut4EF	intron	Glut4EF	FBgn0267336
HUM-4	3R	10724585	A	'AT'	TTTGATTTT	INS	AAAATCAAA	0.2	strelka	intergenic_region	MODIFIER	CG4073-tomboy20	intergenic	intergenic	intergenic
HUM-4	3R	11270732	GCA	'G'	GGAGGCACA	INS	GGAGGCACA	0.25	strelka	non_coding_transcript_exon_variant	MODIFIER	CR31386	exon_5	CR31386	FBgn0051386
HUM-4	3R	12356664	GA	'G'	GGCGGAAAA	INS	GGCGGAAAA	0.158	strelka	upstream_gene_variant	MODIFIER	CG10041	intergenic	intergenic	intergenic
HUM-4	3R	13228784	GT	'G'	CCGCGTTTT	INS	CCGCGTTTT	0.263	strelka	3_prime_UTR_variant	MODIFIER	Ace	3UTR	Ace	FBgn0000024
HUM-4	3R	13624784	CCA	'C'	CCCCCCACA	INS	CCCCCCACA	0.333	strelka	intergenic_region	MODIFIER	CR45680-CR45594	intergenic	intergenic	intergenic
HUM-4	3R	13797043	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.19	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31588	intergenic	intergenic	intergenic
HUM-4	3R	14228116	AG	'A'	TAAAAGCAA	INS	TAAAAGCAA	0.25	strelka	3_prime_UTR_variant	MODIFIER	CG9624	3UTR	CG9624	FBgn0038213
HUM-4	3R	15268544	TA	'T'	AAATTAAAA	INS	AAATTAAAA	0.312	strelka	upstream_gene_variant	MODIFIER	CG14864	intergenic	intergenic	intergenic
HUM-4	3R	15375800	CCAG	'C'	AGCACCAGC	INS	AGCACCAGC	0.25	strelka	upstream_gene_variant	MODIFIER	CG6136	intron	Rbp	FBgn0262483
HUM-4	3R	15426001	TAC	'T'	ATGGTACAC	INS	ATGGTACAC	0.15	strelka	intron_variant	MODIFIER	CG6118	intron	CG6118	FBgn0038339
HUM-4	3R	16273020	CGT	'C'	TAAGCGTGT	INS	TAAGCGTGT	0.143	strelka	5_prime_UTR_variant	MODIFIER	gish	exon_1	gish	FBgn0250823
HUM-4	3R	17587520	CA	'C'	ACCACAAAA	INS	ACCACAAAA	0.214	strelka	intergenic_region	MODIFIER	Hmx-CG7587	intergenic	intergenic	intergenic
HUM-4	3R	18057926	CA	'C'	ATTTCAAAA	INS	ATTTCAAAA	0.214	strelka	upstream_gene_variant	MODIFIER	htl	intergenic	intergenic	intergenic
HUM-4	3R	18114567	ATG	'A'	ATAAATGTG	INS	ATAAATGTG	0.13	strelka	intron_variant	MODIFIER	sr	intron	sr	FBgn0003499
HUM-4	3R	18486027	GTA	'G'	GTATGTATA	INS	GTATGTATA	0.15	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
HUM-4	3R	18881070	AGT	'A'	CGCAAGTGT	INS	CGCAAGTGT	0.13	strelka	downstream_gene_variant	MODIFIER	CG14298	intergenic	intergenic	intergenic
HUM-4	3R	19396279	AT	'A'	TGTGATTTT	INS	TGTGATTTT	0.2	strelka	downstream_gene_variant	MODIFIER	CG18493	intron	Ino80	FBgn0086613
HUM-4	3R	20453420	CAA	'C'	CCAGCAAAA	INS	CCAGCAAAA	0.235	strelka	upstream_gene_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
HUM-4	3R	22594693	A	'ATGCACACACT'	ATTCACGCA	INS	TGCGTGAAT	0	consensus	intron_variant	MODIFIER	Efa6	intron	Efa6	FBgn0051158
HUM-4	3R	22828722	AT	'A'	TATTATTTT	INS	TATTATTTT	0.156	strelka	upstream_gene_variant	MODIFIER	CR44350	intergenic	intergenic	intergenic
HUM-4	3R	23718553	CT	'C'	TCCCCTTTT	INS	TCCCCTTTT	0.286	strelka	upstream_gene_variant	MODIFIER	nau	intergenic	intergenic	intergenic
HUM-4	3R	25351691	AGT	'A'	TGTGAGTGT	INS	TGTGAGTGT	0.15	strelka	3_prime_UTR_variant	MODIFIER	Fur1	3UTR	Fur1	FBgn0004509
HUM-4	3R	25413160	GA	'G'	ATACGAAAA	INS	ATACGAAAA	0.133	strelka	intron_variant	MODIFIER	Fur1	intron	Fur1	FBgn0004509
HUM-4	3R	25551434	GT	'G'	ATTCGTTAG	INS	ATTCGTTAG	0.0909	strelka	downstream_gene_variant	MODIFIER	CR46100	intron	msi	FBgn0011666
HUM-4	3R	25818351	GGT	'G'	AGTGGGTGT	INS	AGTGGGTGT	0.217	strelka	downstream_gene_variant	MODIFIER	CG14354	intergenic	intergenic	intergenic
HUM-4	3R	26698347	GT	'G'	TGTGGTTTT	INS	TGTGGTTTT	0.15	strelka	3_prime_UTR_variant	MODIFIER	amon	3UTR	amon	FBgn0023179
HUM-4	3R	27533221	AGC	'A'	CAGGAGCAG	INS	CAGGAGCAG	0	consensus	frameshift_variant	HIGH	CG12885	exon	CG12885	FBgn0039523
HUM-4	3R	27533224	AG	'A'	GAGCAGCAG	INS	GAGCAGCAG	0	consensus	frameshift_variant	HIGH	CG12885	exon	CG12885	FBgn0039523
HUM-4	3R	27901420	CGT	'C'	TGTACGTGT	INS	TGTACGTGT	0.143	strelka	intron_variant	MODIFIER	CG34353	intron	CG34353	FBgn0085382
HUM-4	3R	27998521	CGT	'C'	AGTGCGTGT	INS	AGTGCGTGT	0.129	strelka	downstream_gene_variant	MODIFIER	CR46087	intergenic	intergenic	intergenic
HUM-4	3R	28273958	GCA	'G'	CAGAGCACA	INS	CAGAGCACA	0.167	strelka	intergenic_region	MODIFIER	CG43124-CG34436	intergenic	intergenic	intergenic
HUM-4	3R	28479954	GT	'G'	CTCGGTTTT	INS	CTCGGTTTT	0.364	strelka	upstream_gene_variant	MODIFIER	CG1894	intergenic	intergenic	intergenic
HUM-4	3R	30743889	GTTA	'G'	TCTCGTTAT	INS	TCTCGTTAT	0.13	strelka	3_prime_UTR_variant	MODIFIER	CG15543	3UTR	CG15543	FBgn0039799
HUM-4	3R	31904372	AT	'A'	TTTGATTTT	INS	TTTGATTTT	0.16	strelka	intron_variant	MODIFIER	heph	intron	heph	FBgn0011224
HUM-4	4	666238	TA	'T'	ATTATAAAA	INS	ATTATAAAA	0.148	strelka	frameshift_variant	HIGH	Slip1	exon_4	Slip1	FBgn0024728
HUM-4	X	8012293	GAT	'G'	AGGTGATAT	INS	AGGTGATAT	0.375	strelka	intron_variant	MODIFIER	Tbh	intron	Tbh	FBgn0010329
HUM-7	2L	826579	GCTCT	'G'	CTCGGCTCT	INS	CTCGGCTCT	0.214	strelka	upstream_gene_variant	MODIFIER	CG3862	intron	dock	FBgn0010583
HUM-7	2L	902733	GCA	'G'	ACTGGCACA	INS	ACTGGCACA	0.0938	strelka	upstream_gene_variant	MODIFIER	CR45348	intergenic	intergenic	intergenic
HUM-7	2L	1648891	TAG	'T'	GAGGTAGAG	INS	GAGGTAGAG	0.19	strelka	upstream_gene_variant	MODIFIER	CR45695	intergenic	intergenic	intergenic
HUM-7	2L	2493308	CA	'C'	ATCGCAAAA	INS	ATCGCAAAA	0.16	strelka	upstream_gene_variant	MODIFIER	Slh	intron	oaf	FBgn0011818
HUM-7	2L	2606044	CA	'C'	AAAACAAAA	INS	AAAACAAAA	0.128	strelka	upstream_gene_variant	MODIFIER	CR44789	intergenic	intergenic	intergenic
HUM-7	2L	2979462	GAT	'G'	TATTGATAT	INS	TATTGATAT	0.368	strelka	upstream_gene_variant	MODIFIER	CG9641	intergenic	intergenic	intergenic
HUM-7	2L	3179909	CGT	'C'	TTTTCGTGT	INS	TTTTCGTGT	0.111	strelka	intron_variant	MODIFIER	CG34393	intron	CG34393	FBgn0085422
HUM-7	2L	3545846	CCATA	'C'	CTATCCATA	INS	CTATCCATA	0.158	strelka	intron_variant	MODIFIER	drm	intron	drm	FBgn0024244
HUM-7	2L	3584532	TTC	'T'	ATAGTTCTC	INS	ATAGTTCTC	0.0976	strelka	upstream_gene_variant	MODIFIER	sob	intergenic	intergenic	intergenic
HUM-7	2L	3888919	T	'TAG'	TATATAGAG	INS	TATATAGAG	0.158	strelka	upstream_gene_variant	MODIFIER	capu	intron	capu	FBgn0000256
HUM-7	2L	3922899	TA	'T'	GATTTAAAA	INS	GATTTAAAA	0.148	strelka	intron_variant	MODIFIER	fred	intron	fred	FBgn0051774
HUM-7	2L	3982209	CA	'C'	GTGACAAAA	INS	GTGACAAAA	0.154	strelka	intron_variant	MODIFIER	fred	intron	fred	FBgn0051774
HUM-7	2L	4145303	TAC	'T'	CACTTACAC	INS	CACTTACAC	0.105	strelka	upstream_gene_variant	MODIFIER	CG2955	intergenic	intergenic	intergenic
HUM-7	2L	4564925	G	'GA'	AACTGAAAA	INS	TTTTCAGTT	0.174	strelka	intron_variant	MODIFIER	dp	intron	dpy	FBgn0053196
HUM-7	2L	5000440	GCA	'G'	AAGCGCACA	INS	AAGCGCACA	0.111	strelka	upstream_gene_variant	MODIFIER	Rtnl1	intron	Rtnl1	FBgn0053113
HUM-7	2L	5036936	G	'GA'	AAAAGAAAA	INS	TTTTCTTTT	0.167	strelka	3_prime_UTR_variant	MODIFIER	Cg25C	3UTR	Col4a1	FBgn0000299
HUM-7	2L	5570894	CT	'C'	TTCACTTTT	INS	TTCACTTTT	0.176	strelka	intergenic_region	MODIFIER	snRNA:U4:25F-CG14011	intergenic	intergenic	intergenic
HUM-7	2L	5571913	CT	'C'	AACACTTTT	INS	AACACTTTT	0.389	strelka	intergenic_region	MODIFIER	snRNA:U4:25F-CG14011	intergenic	intergenic	intergenic
HUM-7	2L	6301728	C	'CCATA'	CACTCCATG	INS	CACTCCATG	0.0714	mutect2	intron_variant	MODIFIER	Ddr	intron	Ddr	FBgn0053531
HUM-7	2L	6808711	GGCT	'G'	GAAGGGCTG	INS	GAAGGGCTG	0.115	strelka	upstream_gene_variant	MODIFIER	CG17375	intergenic	intergenic	intergenic
HUM-7	2L	8008251	A	'AACTTCCGGTACAAATTCTGAATTAAATATG'	CACCAATTT	INS	AAATTGGTG	0.174	strelka	upstream_gene_variant	MODIFIER	Wwox	intergenic	intergenic	intergenic
HUM-7	2L	8591272	ATT	'A'	ATGAATTTT	INS	ATGAATTTT	0.357	strelka	upstream_gene_variant	MODIFIER	CR43855	ncRNA	CR43855	FBgn0264437
HUM-7	2L	8615380	GAT	'G'	AAAAGATAT	INS	AAAAGATAT	0.182	strelka	upstream_gene_variant	MODIFIER	tRNA:CR31602	intron	Sema-1a	FBgn0011259
HUM-7	2L	9522646	A	'ATGATTTTAAAAAATACGTCATTATTGT'	AAGTAAGAA	INS	TTCTTACTT	0.333	strelka	downstream_gene_variant	MODIFIER	CG33298	intron	Oatp30B	FBgn0032123
HUM-7	2L	9532965	T	'TCC'	TCAATCTTG	INS	TCAATCTTG	0.211	strelka	upstream_gene_variant	MODIFIER	Oatp30B	intron	Oatp30B	FBgn0032123
HUM-7	2L	9716192	TGG	'T'	TTCATGGTT	INS	TTCATGGTT	0	consensus	3_prime_UTR_variant	MODIFIER	Nckx30C	3UTR	Nckx30C	FBgn0028704
HUM-7	2L	9741535	T	'TATAG'	TATATATAT	INS	TATATATAT	0.154	mutect2	downstream_gene_variant	MODIFIER	CG13117	intron	Nckx30C	FBgn0028704
HUM-7	2L	10246697	AAT	'A'	CATAAATAT	INS	CATAAATAT	0.176	strelka	upstream_gene_variant	MODIFIER	CG31717	intron	chico	FBgn0024248
HUM-7	2L	10897615	GA	'G'	TTTGGAAAA	INS	TTTGGAAAA	0.158	strelka	upstream_gene_variant	MODIFIER	CR44491	intergenic	intergenic	intergenic
HUM-7	2L	11423492	AGT	'A'	TCTGAGTGT	INS	TCTGAGTGT	0.105	strelka	intergenic_region	MODIFIER	CR43681-salm	intergenic	intergenic	intergenic
HUM-7	2L	11601027	GAT	'G'	GTTGGATAT	INS	GTTGGATAT	0.16	strelka	intron_variant	MODIFIER	kek2	intron	kek2	FBgn0015400
HUM-7	2L	11615722	CA	'C'	GCGCCAAAA	INS	GCGCCAAAA	0.147	strelka	upstream_gene_variant	MODIFIER	spag4	intron	kek2	FBgn0015400
HUM-7	2L	11688453	CA	'C'	CTCCCAAAA	INS	CTCCCAAAA	0.143	strelka	intergenic_region	MODIFIER	CR44481-CG4988	intergenic	intergenic	intergenic
HUM-7	2L	12779975	A	'ACCACT'	CATCACACA	INS	TGTGTGATG	0.179	mutect2	intergenic_region	MODIFIER	CG15483-CR43818	intergenic	intergenic	intergenic
HUM-7	2L	13385389	C	'CAT'	GTTACATAT	INS	GTTACATAT	0.143	strelka	3_prime_UTR_variant	MODIFIER	loqs	ncRNA	CR44599	FBgn0265810
HUM-7	2L	13694220	TG	'T'	GTTGTGGGG	INS	GTTGTGGGG	0.148	strelka	intron_variant	MODIFIER	CG31814	intron	CG31814	FBgn0051814
HUM-7	2L	14115520	TCTCA	'T'	ACTCTCTCA	INS	ACTCTCTCA	0.2	strelka	upstream_gene_variant	MODIFIER	CG31769	intron	CG46301	FBgn0283651
HUM-7	2L	14296640	CA	'C'	GCACCAAAA	INS	GCACCAAAA	0.154	strelka	upstream_gene_variant	MODIFIER	CR43640	intron	wb	FBgn0261563
HUM-7	2L	14710188	TA	'T'	AGTATAAAA	INS	AGTATAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG15282	intergenic	intergenic	intergenic
HUM-7	2L	14948589	CT	'C'	TTCCCTTTT	INS	TTCCCTTTT	0.235	strelka	intron_variant	MODIFIER	CG42313	intron	CG42313	FBgn0259213
HUM-7	2L	15357624	AT	'A'	TTACATTTT	INS	TTACATTTT	0.118	strelka	downstream_gene_variant	MODIFIER	CG15258	intergenic	intergenic	intergenic
HUM-7	2L	15779354	GTCA	'G'	TCTCGTCAT	INS	TCTCGTCAT	0.138	strelka	upstream_gene_variant	MODIFIER	CG43760	intergenic	intergenic	intergenic
HUM-7	2L	16552297	AAC	'A'	GGCAAACAC	INS	GGCAAACAC	0.148	strelka	upstream_gene_variant	MODIFIER	CG5968	intron	CG42389	FBgn0259735
HUM-7	2L	16803455	GC	'G'	CGATGCCCC	INS	CGATGCCCC	0.176	strelka	frameshift_variant	HIGH	CG13280	exon_2	CG13280	FBgn0032609
HUM-7	2L	16937396	T	'TACC'	GAATTCCCG	INS	GAATTCCCG	0.357	strelka	intergenic_region	MODIFIER	tweek-CR43053	intergenic	intergenic	intergenic
HUM-7	2L	18110367	G	'GA'	TTATGAAAA	INS	TTTTCATAA	0.114	strelka	upstream_gene_variant	MODIFIER	CG15152	intergenic	intergenic	intergenic
HUM-7	2L	19100187	GAT	'G'	TATAGATAT	INS	TATAGATAT	0.111	strelka	upstream_gene_variant	MODIFIER	CG17344	intron	Lim3	FBgn0002023
HUM-7	2L	19137604	TC	'T'	TTTTTCACA	INS	TTTTTCACA	0.212	mutect2	upstream_gene_variant	MODIFIER	l(2)37Cg	intron	brat	FBgn0010300
HUM-7	2L	19213746	ACG	'A'	ACACACGCG	INS	ACACACGCG	0.304	strelka	upstream_gene_variant	MODIFIER	CR44189	intergenic	intergenic	intergenic
HUM-7	2L	20175724	CT	'C'	TGTTCTTTT	INS	TGTTCTTTT	0.188	strelka	intergenic_region	MODIFIER	CG10651-CR40341	intergenic	intergenic	intergenic
HUM-7	2L	20618254	C	'CT'	TCTTCTTTT	INS	TCTTCTTTT	0.138	strelka	downstream_gene_variant	MODIFIER	CG15475	ncRNA	CR44909	FBgn0266214
HUM-7	2L	21394513	AT	'A'	GTAGATTTT	INS	GTAGATTTT	0.4	strelka	downstream_gene_variant	MODIFIER	nrv3	intergenic	intergenic	intergenic
HUM-7	2L	21607261	G	'GA'	TGAGGAAAA	INS	TTTTCCTCA	0.114	strelka	intergenic_region	MODIFIER	CR42546-CG2201	intergenic	intergenic	intergenic
HUM-7	2L	22354438	GT	'G'	GGGTGTTTT	INS	GGGTGTTTT	0.167	strelka	intron_variant	MODIFIER	CG17018	intron	CG17018	FBgn0039972
HUM-7	2R	1360041	CATG	'C'	TCTTCATGA	INS	TCTTCATGA	0.286	strelka	intron_variant	MODIFIER	l(2)41Ab	intron	l(2)41Ab	FBgn0262123
HUM-7	2R	2701108	GAT	'G'	TATAGATAT	INS	TATAGATAT	0.235	strelka	intergenic_region	MODIFIER	MFS17-CG41378	intergenic	intergenic	intergenic
HUM-7	2R	2886131	AT	'A'	AAATATTTT	INS	AAATATTTT	0.277	strelka	intergenic_region	MODIFIER	CG41378-Scp1	intergenic	intergenic	intergenic
HUM-7	2R	3193511	AT	'A'	GACAATTTT	INS	GACAATTTT	0.129	strelka	downstream_gene_variant	MODIFIER	CG42596	intergenic	intergenic	intergenic
HUM-7	2R	4150799	CA	'C'	ATGACAAAA	INS	ATGACAAAA	0.267	strelka	intergenic_region	MODIFIER	CG17683-CG40127	intergenic	intergenic	intergenic
HUM-7	2R	4479197	T	'TA'	CACTTAAAA	INS	CACTTAAAA	0.179	strelka	intergenic_region	MODIFIER	Gprk1-CR44100	intergenic	intergenic	intergenic
HUM-7	2R	4503863	TA	'T'	AAACTAAAA	INS	AAACTAAAA	0.263	strelka	upstream_gene_variant	MODIFIER	CR44100	intergenic	intergenic	intergenic
HUM-7	2R	4862970	TC	'T'	TTTTTCAAT	INS	TTTTTCAAT	0.154	strelka	intergenic_region	MODIFIER	CG14464-CG44102	intergenic	intergenic	intergenic
HUM-7	2R	6164168	TGTTTTACGTG	'T'	GAGTTGTTT	INS	GAGTTGTTT	0.139	strelka	upstream_gene_variant	MODIFIER	tRNA:N5:42Ac	intron	EcR	FBgn0000546
HUM-7	2R	6203795	GAT	'G'	ATCGGATAT	INS	ATCGGATAT	0.174	strelka	downstream_gene_variant	MODIFIER	CG8335	intron	CG30431	FBgn0050431
HUM-7	2R	6713579	AAAT	'A'	GGCAAAATA	INS	GGCAAAATA	0.188	strelka	upstream_gene_variant	MODIFIER	CG3409	intron	CG45092	FBgn0266525
HUM-7	2R	7066079	TTTTG	'T'	TTTTTTTTG	INS	TTTTTTTTG	0.208	mutect2	3_prime_UTR_variant	MODIFIER	Tsp42Er	3UTR	Tsp42Er	FBgn0033139
HUM-7	2R	7229207	G	'GA'	AAACGAAAA	INS	TTTTCGTTT	0.235	strelka	downstream_gene_variant	MODIFIER	Or43a	intergenic	intergenic	intergenic
HUM-7	2R	7280452	AT	'A'	TGTTATTTT	INS	TGTTATTTT	0.2	strelka	upstream_gene_variant	MODIFIER	Br140	intron	Incenp	FBgn0260991
HUM-7	2R	7614713	A	'ATCAGCTATGACTAATAAGGAACCACACAGAATACT'	TATAATAAA	INS	TTTATTATA	0.2	strelka	upstream_gene_variant	MODIFIER	CG1358	intron	CG1358	FBgn0033196
HUM-7	2R	8996565	ACTG	'A'	GAGAACTGC	INS	GAGAACTGC	0.12	strelka	disruptive_inframe_deletion	MODERATE	Np	exon_4	Np	FBgn0265011
HUM-7	2R	9202689	TTGTA	'T'	ATATTTGTA	INS	ATATTTGTA	0.115	strelka	upstream_gene_variant	MODIFIER	VhaAC45	intergenic	intergenic	intergenic
HUM-7	2R	9301947	CCCTTT	'C'	CCTTCCCTT	INS	CCTTCCCTT	0.1	mutect2	3_prime_UTR_variant	MODIFIER	Drep-2	3UTR	Drep2	FBgn0028408
HUM-7	2R	9490724	TTA	'T'	AGAGTTATA	INS	AGAGTTATA	0.118	strelka	upstream_gene_variant	MODIFIER	Wnt2	intergenic	intergenic	intergenic
HUM-7	2R	9543959	GAAGA	'G'	AGAAGAAGA	INS	AGAAGAAGA	0.15	mutect2,strelka	3_prime_UTR_variant	MODIFIER	CG1888	3UTR	CG1888	FBgn0033421
HUM-7	2R	10016584	C	'CA'	TATTCAAAA	INS	TATTCAAAA	0.16	strelka	upstream_gene_variant	MODIFIER	mir-4967	intron	Pka-R2	FBgn0022382
HUM-7	2R	10095352	CAG	'C'	AAAGCAGAG	INS	AAAGCAGAG	0.25	strelka	3_prime_UTR_variant	MODIFIER	CG2269	3UTR	CG2269	FBgn0033484
HUM-7	2R	10131279	AT	'A'	TGATATTTT	INS	TGATATTTT	0.16	strelka	upstream_gene_variant	MODIFIER	gem	intron	gem	FBgn0050011
HUM-7	2R	10234009	TTGC	'T'	GCTGTTGCT	INS	GCTGTTGCT	0.125	strelka	disruptive_inframe_deletion	MODERATE	CG12912	exon	CG12912	FBgn0033497
HUM-7	2R	10538658	AAC	'A'	CAGAAACAC	INS	CAGAAACAC	0.13	strelka	upstream_gene_variant	MODIFIER	lola	intron	lola	FBgn0283521
HUM-7	2R	10571341	G	'GAACCAACCGTCGACGACGACGGCGACGATTATGC'	TTGAGGCCG	INS	CGGCCTCAA	0.263	strelka	intron_variant	MODIFIER	psq	intron	psq	FBgn0263102
HUM-7	2R	10773147	TGGAAACGA	'T'	CGTTTGGAA	INS	CGTTTGGAA	0.267	strelka	intron_variant	MODIFIER	CG33144	intron	CG33144	FBgn0053144
HUM-7	2R	10773156	A	'ATAGC'	ACGAATGAA	INS	TTCATTCGT	0.267	strelka	intron_variant	MODIFIER	CG33144	intron	CG33144	FBgn0053144
HUM-7	2R	11577720	T	'TTA'	ATATTTATA	INS	ATATTTATA	0.125	strelka	3_prime_UTR_variant	MODIFIER	tou	3UTR	tou	FBgn0033636
HUM-7	2R	11755204	CGTT	'C'	CTGTCGTTG	INS	CTGTCGTTG	0.13	strelka	upstream_gene_variant	MODIFIER	ths	intergenic	intergenic	intergenic
HUM-7	2R	12224563	GTA	'G'	GTGTGTATG	INS	GTGTGTATG	0.154	strelka	3_prime_UTR_variant	MODIFIER	CG8854	3UTR	CG8854	FBgn0033702
HUM-7	2R	12534599	G	'GTTT'	CTTAGTTTT	INS	AAAACTAAG	0.35	strelka	intron_variant	MODIFIER	fra	intron	fra	FBgn0011592
HUM-7	2R	12704295	AGT	'A'	AGTGAGTGT	INS	AGTGAGTGT	0.125	strelka	upstream_gene_variant	MODIFIER	CG42663	intergenic	intergenic	intergenic
HUM-7	2R	12979536	TA	'T'	ATAATAAAA	INS	ATAATAAAA	0.174	strelka	intron_variant	MODIFIER	Psc	intron	Psc	FBgn0005624
HUM-7	2R	13092174	AT	'A'	TTTCATTTT	INS	TTTCATTTT	0.143	strelka	intergenic_region	MODIFIER	Drl-2-CG44341	intergenic	intergenic	intergenic
HUM-7	2R	13318583	A	'AAAAAT'	AATAAAAAA	INS	TTTTTTATT	0.188	strelka	intergenic_region	MODIFIER	CG17047-CR44206	intergenic	intergenic	intergenic
HUM-7	2R	13584834	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.125	strelka	intron_variant	MODIFIER	CG6191	intron	CG45088	FBgn0266489
HUM-7	2R	13716477	GGT	'G'	TGCAGGTGT	INS	TGCAGGTGT	0.192	strelka	intron_variant	MODIFIER	fas	intron	fas	FBgn0000633
HUM-7	2R	13752873	ATGC	'A'	AGTAATGCT	INS	AGTAATGCT	0.3	strelka	upstream_gene_variant	MODIFIER	CG6280	intergenic	intergenic	intergenic
HUM-7	2R	13764044	A	'AAT'	TTACAATAT	INS	ATATTGTAA	0.154	strelka	intergenic_region	MODIFIER	CG6280-Cpr50Ca	intergenic	intergenic	intergenic
HUM-7	2R	13961440	CGAA	'C'	CCATCGAAA	INS	CCATCGAAA	0.13	strelka	upstream_gene_variant	MODIFIER	AGO1	intron	Cp1	FBgn0013770
HUM-7	2R	13990455	AAC	'A'	ACGTAACAC	INS	ACGTAACAC	0.364	strelka	5_prime_UTR_variant	MODIFIER	RN-tre	5UTR	RN-tre	FBgn0020620
HUM-7	2R	14116439	AG	'A'	AAAAAGGGG	INS	AAAAAGGGG	0.25	strelka	intron_variant	MODIFIER	Prosap	intron	Prosap	FBgn0040752
HUM-7	2R	14239992	T	'TA'	AATATAAAA	INS	AATATAAAA	0.172	strelka	5_prime_UTR_variant	MODIFIER	CG8494	5UTR	Usp20-33	FBgn0033916
HUM-7	2R	14715928	ACTCT	'A'	CCTCACTCT	INS	CCTCACTCT	0.19	strelka	upstream_gene_variant	MODIFIER	mspo	intergenic	intergenic	intergenic
HUM-7	2R	14932598	AT	'A'	AGGAATTTT	INS	AGGAATTTT	0.222	strelka	upstream_gene_variant	MODIFIER	CG12853	intron	ADPS	FBgn0033983
HUM-7	2R	14934579	T	'TA'	TTTATAATT	INS	TTTATAATT	0.226	strelka	upstream_gene_variant	MODIFIER	CG10253	intron	ADPS	FBgn0033983
HUM-7	2R	14946268	TTGC	'T'	GATATTGCT	INS	GATATTGCT	0.12	strelka	disruptive_inframe_deletion	MODERATE	aPKC	exon_10	aPKC	FBgn0261854
HUM-7	2R	15048832	C	'CCA'	ACACCCACA	INS	ACACCCACA	0.138	strelka	downstream_gene_variant	MODIFIER	CR43622	intergenic	intergenic	intergenic
HUM-7	2R	15145834	AT	'A'	AAATATTTT	INS	AAATATTTT	0.172	strelka	3_prime_UTR_variant	MODIFIER	CG8089	3UTR	CG8089	FBgn0033993
HUM-7	2R	16580233	CA	'C'	CGGGCAAAA	INS	CGGGCAAAA	0.129	strelka	5_prime_UTR_variant	MODIFIER	Cdk4	exon_1	Cdk4	FBgn0016131
HUM-7	2R	16617194	GA	'G'	CCCCGAAAA	INS	CCCCGAAAA	0.182	strelka	upstream_gene_variant	MODIFIER	CG5065	intron	CG5065	FBgn0034145
HUM-7	2R	17248057	A	'AT'	CTGCACATA	INS	TATGTGCAG	0.115	strelka	upstream_gene_variant	MODIFIER	CG18469	intron	mbl	FBgn0265487
HUM-7	2R	17314854	GAC	'G'	CGCCGACAC	INS	CGCCGACAC	0.2	strelka	intron_variant	MODIFIER	mbl	intron	mbl	FBgn0265487
HUM-7	2R	17592686	TTA	'T'	CGTATTATA	INS	CGTATTATA	0.182	strelka	upstream_gene_variant	MODIFIER	RhoGAP54D	intergenic	intergenic	intergenic
HUM-7	2R	17964289	A	'AT'	TTATATATT	INS	AATATATAA	0.13	strelka	intergenic_region	MODIFIER	PpY-55A-dpr13	intergenic	intergenic	intergenic
HUM-7	2R	18309357	TAC	'T'	TACATACAC	INS	TACATACAC	0.107	strelka	upstream_gene_variant	MODIFIER	Tango8	intron	sbb	FBgn0010575
HUM-7	2R	18320650	A	'AAC'	TGCAAAAAA	INS	TTTTTTGCA	0.111	mutect2	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
HUM-7	2R	18327928	TTG	'T'	ATACTTGTG	INS	ATACTTGTG	0.182	strelka	intron_variant	MODIFIER	sbb	intron	sbb	FBgn0010575
HUM-7	2R	18618332	AC	'A'	GCCGACAAT	INS	GCCGACAAT	0.227	strelka	upstream_gene_variant	MODIFIER	mRpS28	intron	CG5493	FBgn0034364
HUM-7	2R	19398363	C	'CTG'	CTCTCTGTG	INS	CTCTCTGTG	0.111	strelka	3_prime_UTR_variant	MODIFIER	hts	3UTR	hts	FBgn0263391
HUM-7	2R	19572829	CA	'C'	ACAACAAAA	INS	ACAACAAAA	0.129	strelka	intron_variant	MODIFIER	sm	intron	sm	FBgn0003435
HUM-7	2R	19621122	C	'CA'	AGAACAAAA	INS	AGAACAAAA	0.227	strelka	intron_variant	MODIFIER	sm	intron	sm	FBgn0003435
HUM-7	2R	19697526	CA	'C'	ATTGCAAAA	INS	ATTGCAAAA	0.263	strelka	upstream_gene_variant	MODIFIER	Obp56a	intergenic	intergenic	intergenic
HUM-7	2R	20396606	C	'CAGCAAA'	GCAGCAGCA	INS	GCAGCAGCA	0.12	mutect2	intergenic_region	MODIFIER	CG11192-CG12484	intergenic	intergenic	intergenic
HUM-7	2R	20647959	TTGC	'T'	TTACTTGCT	INS	TTACTTGCT	0.208	strelka	upstream_gene_variant	MODIFIER	CG33785	intron	Lrt	FBgn0034540
HUM-7	2R	20679131	CA	'C'	AAGGCAAAA	INS	AAGGCAAAA	0.214	strelka	intergenic_region	MODIFIER	CG30152-Gr57a	intergenic	intergenic	intergenic
HUM-7	2R	20887807	GCA	'G'	TCTGGCACA	INS	TCTGGCACA	0.115	strelka	intron_variant	MODIFIER	otp	intron	otp	FBgn0015524
HUM-7	2R	21514404	TGA	'T'	TGAGTGAGA	INS	TGAGTGAGA	0.12	strelka	3_prime_UTR_variant	MODIFIER	MESK2	3UTR	MESK2	FBgn0043070
HUM-7	2R	21521950	AAT	'A'	TAATAATAT	INS	TAATAATAT	0.12	strelka	upstream_gene_variant	MODIFIER	CG10494	intergenic	intergenic	intergenic
HUM-7	2R	22336086	CAG	'C'	GAGCCAGAG	INS	GAGCCAGAG	0.136	strelka	upstream_gene_variant	MODIFIER	T3dh	intron	Liprin-gamma	FBgn0034720
HUM-7	2R	22608019	TA	'T'	TCTATAAAG	INS	TCTATAAAG	0.389	strelka	upstream_gene_variant	MODIFIER	CG4294	intergenic	intergenic	intergenic
HUM-7	2R	22767306	GAC	'G'	AACAGACAC	INS	AACAGACAC	0.115	strelka	downstream_gene_variant	MODIFIER	CG13527	intron	CG42260	FBgn0259145
HUM-7	2R	23819164	GAT	'G'	AGATGATAT	INS	AGATGATAT	0.125	strelka	upstream_gene_variant	MODIFIER	CG4797	intergenic	intergenic	intergenic
HUM-7	3L	414047	CGCCG	'C'	AGTTCGCCG	INS	AGTTCGCCG	0.12	strelka	intergenic_region	MODIFIER	CR43969-CG13891	intergenic	intergenic	intergenic
HUM-7	3L	1294571	T	'TA'	TCTGTTTTA	INS	TCTGTTTTA	0.318	strelka	3_prime_UTR_variant	MODIFIER	CG32333	3UTR	CG32333	FBgn0052333
HUM-7	3L	1995420	A	'ATGTGATTCCT'	ATTGATTTA	INS	TAAATCAAT	0.182	mutect2	intergenic_region	MODIFIER	CG1139-CG42841	intergenic	intergenic	intergenic
HUM-7	3L	2732365	AGT	'A'	TGTAAGTGT	INS	TGTAAGTGT	0.235	strelka	intron_variant	MODIFIER	Mrtf	intron	Mrtf	FBgn0052296
HUM-7	3L	2808342	TGA	'T'	TGTGTGAGA	INS	TGTGTGAGA	0.227	strelka	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
HUM-7	3L	2844484	AAG	'A'	GAGAAAGAG	INS	GAGAAAGAG	0.292	strelka	intron_variant	MODIFIER	Tet	intron	Tet	FBgn0263392
HUM-7	3L	3072450	G	'GCA'	CTGTGCACA	INS	TGTGCACAG	0.125	strelka	upstream_gene_variant	MODIFIER	CG32486	intron	CG11486	FBgn0035397
HUM-7	3L	3163634	G	'GT'	TATTGTTTT	INS	AAAACAATA	0.357	mutect2	frameshift_variant	HIGH	rasp	exon	rasp	FBgn0024194
HUM-7	3L	3258308	C	'CAT'	TATACATAT	INS	TATACATAT	0.13	strelka	5_prime_UTR_variant	MODIFIER	ckd	exon_1	ckd	FBgn0035427
HUM-7	3L	4158653	ATG	'A'	GTGCATGTG	INS	GTGCATGTG	0.167	strelka	downstream_gene_variant	MODIFIER	mas	intron	nab	FBgn0259986
HUM-7	3L	4350488	A	'AT'	AAACATTTT	INS	AAAATGTTT	0.128	strelka	upstream_gene_variant	MODIFIER	Cip4	intron	Cip4	FBgn0035533
HUM-7	3L	4371040	AGT	'A'	TGTGAGTGT	INS	TGTGAGTGT	0.147	strelka	5_prime_UTR_variant	MODIFIER	DopEcR	5UTR	DopEcR	FBgn0035538
HUM-7	3L	4416906	CTG	'C'	ACTGCTGTG	INS	ACTGCTGTG	0.138	strelka	upstream_gene_variant	MODIFIER	CG15020	intron	DOR	FBgn0035542
HUM-7	3L	4480005	AT	'A'	AAACATTTT	INS	AAACATTTT	0.121	strelka	upstream_gene_variant	MODIFIER	CG7465	intergenic	intergenic	intergenic
HUM-7	3L	4717092	CT	'C'	TACACTTAC	INS	TACACTTAC	0.148	strelka	intron_variant	MODIFIER	RhoGEF64C	intron	RhoGEF64C	FBgn0035574
HUM-7	3L	4910643	G	'GT'	TCTAGTTTT	INS	AAAACTAGA	0.125	strelka	5_prime_UTR_variant	MODIFIER	Rh50	5UTR	Rh50	FBgn0028699
HUM-7	3L	4944998	GA	'G'	CGGAGAAAA	INS	CGGAGAAAA	0.167	strelka	intron_variant	MODIFIER	Con	intron	Con	FBgn0005775
HUM-7	3L	5315093	G	'GATGTGGCCAAGATGTGTGT'	ATGTGCTGT	INS	ACAGCACAT	0.19	strelka	downstream_gene_variant	MODIFIER	CR45741	intergenic	intergenic	intergenic
HUM-7	3L	5500012	AAAAAAAG	'A'	AAAAAAAAA	INS	AAAAAAAAA	0	consensus	upstream_gene_variant	MODIFIER	blanks	exon_1	CR44518	FBgn0265711
HUM-7	3L	5521147	T	'TTCTTTACTGAAATTTTACTG'	GAAATGATT	INS	GAAATGATT	0.214	strelka	intron_variant	MODIFIER	Lkr	intron	Lkr	FBgn0035610
HUM-7	3L	6316995	C	'CTAGCCAGATGTGTTGGTGTGTTGTTGCACTGT'	ATGTCTGCA	INS	ATGTCTGCA	0.286	strelka	upstream_gene_variant	MODIFIER	Or65a	intergenic	intergenic	intergenic
HUM-7	3L	6722329	AAT	'A'	AAATAATAA	INS	AAATAATAA	0	consensus	upstream_gene_variant	MODIFIER	ple	intergenic	intergenic	intergenic
HUM-7	3L	6752729	GGAA	'G'	GTGAGGAAG	INS	GTGAGGAAG	0.231	strelka	5_prime_UTR_variant	MODIFIER	velo	exon_1	velo	FBgn0035713
HUM-7	3L	7607544	C	'CTA'	CTGTCTATA	INS	CTGTCTATA	0.154	strelka	intron_variant	MODIFIER	CG33275	intron	Pura	FBgn0035802
HUM-7	3L	7996430	C	'CTA'	ACGCCTATA	INS	ACGCCTATA	0.118	strelka	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
HUM-7	3L	8040973	TATAC	'T'	TATATATAC	INS	TATATATAC	0.0811	mutect2	intron_variant	MODIFIER	nmo	intron	nmo	FBgn0011817
HUM-7	3L	8094678	GAT	'G'	TAATGATAT	INS	TAATGATAT	0.231	strelka	upstream_gene_variant	MODIFIER	CG7565	intron	Ect4	FBgn0262579
HUM-7	3L	8267160	GCA	'G'	CCACGCACA	INS	CCACGCACA	0.2	strelka	intron_variant	MODIFIER	Dscam4	intron	Dscam4	FBgn0263219
HUM-7	3L	8442121	GCA	'G'	AAACGCACA	INS	AAACGCACA	0.133	strelka	upstream_gene_variant	MODIFIER	Unr	intron	Unr	FBgn0263352
HUM-7	3L	9317532	T	'TACATACAA'	TATATATAT	INS	TATATATAT	0.158	strelka	intergenic_region	MODIFIER	GluRIB-PGRP-LA	intergenic	intergenic	intergenic
HUM-7	3L	9478243	TCCATA	'T'	ATATTCCAT	INS	ATATTCCAT	0.25	strelka	upstream_gene_variant	MODIFIER	Uch-L5	intron	Jarid2	FBgn0036004
HUM-7	3L	9848453	G	'GAT'	ACTGGATAT	INS	ATATCCAGT	0.121	strelka	intron_variant	MODIFIER	RasGAP1	intron	RasGAP1	FBgn0004390
HUM-7	3L	9917589	AATATGTTATTTTGACG	'A'	GTAAAATAT	INS	GTAAAATAT	0.182	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
HUM-7	3L	9917607	G	'GTCCAGGACAA'	ACGGGAATT	INS	AATTCCCGT	0.167	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
HUM-7	3L	9917612	T	'TAAAG'	AATTTTTAT	INS	AATTTTTAT	0.174	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
HUM-7	3L	9958207	GAT	'G'	ATTTGATAT	INS	ATTTGATAT	0.115	strelka	intron_variant	MODIFIER	CG34356	intron	CG34356	FBgn0085385
HUM-7	3L	10116148	CCCGTTACCCTTA	'C'	TATGCCCGT	INS	TATGCCCGT	0.455	strelka	downstream_gene_variant	MODIFIER	dpr6	intron	dpr6	FBgn0040823
HUM-7	3L	10297968	CA	'C'	TGGCCAAAA	INS	TGGCCAAAA	0.2	strelka	non_coding_transcript_exon_variant	MODIFIER	CR46003	exon_1	CR46003	FBgn0267665
HUM-7	3L	10485997	CT	'C'	TTTCCTTTT	INS	TTTCCTTTT	0.138	strelka	upstream_gene_variant	MODIFIER	S-Lap4	intron	Rbfox1	FBgn0052062
HUM-7	3L	10726248	AT	'A'	TAATATTTT	INS	TAATATTTT	0.0909	strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
HUM-7	3L	10733623	T	'TA'	ACCTTAAAA	INS	ACCTTAAAA	0.125	strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
HUM-7	3L	10747590	TTG	'T'	GTGTTTGTG	INS	GTGTTTGTG	0.167	strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
HUM-7	3L	10756940	T	'TCCAGATC'	AGATTCCAG	INS	AGATTCCAG	0.139	strelka	intergenic_region	MODIFIER	NijA-CG43245	intergenic	intergenic	intergenic
HUM-7	3L	11144932	G	'GTTGTTGCGA'	GCTTGTTGT	INS	ACAACAAGC	0.0645	mutect2	downstream_gene_variant	MODIFIER	CG6216	intron	CG32082	FBgn0052082
HUM-7	3L	11207699	GTA	'G'	ATATGTATA	INS	ATATGTATA	0.15	strelka	upstream_gene_variant	MODIFIER	Plod	intron	Ube3a	FBgn0061469
HUM-7	3L	11367757	G	'GA'	GGCCGAAAA	INS	TTTTCGGCC	0.19	strelka	upstream_gene_variant	MODIFIER	CG6163	intergenic	intergenic	intergenic
HUM-7	3L	11552789	CT	'C'	CTTTCTTTT	INS	CTTTCTTTT	0.308	strelka	upstream_gene_variant	MODIFIER	mir-4968	intron	Mob2	FBgn0259481
HUM-7	3L	11596920	ATG	'A'	GCGTATGTG	INS	GCGTATGTG	0.263	strelka	upstream_gene_variant	MODIFIER	CR45672	intergenic	intergenic	intergenic
HUM-7	3L	11932376	G	'GT'	GTATGTTTT	INS	AAAACATAC	0.179	strelka	intron_variant	MODIFIER	CG44837	intron	byn	FBgn0011723
HUM-7	3L	12164757	GT	'G'	GTTCGTTTT	INS	GTTCGTTTT	0.182	strelka	3_prime_UTR_variant	MODIFIER	Rh7	3UTR	Rh7	FBgn0036260
HUM-7	3L	13680938	AT	'A'	TAAGATTTT	INS	TAAGATTTT	0.138	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
HUM-7	3L	13717416	GGT	'G'	CGTGGGTGT	INS	CGTGGGTGT	0.136	strelka	intron_variant	MODIFIER	bru-3	intron	bru3	FBgn0264001
HUM-7	3L	14302222	TAA	'T'	TATATAAAT	INS	TATATAAAT	0	consensus	intron_variant	MODIFIER	fz	intron	fz	FBgn0001085
HUM-7	3L	14302230	T	'TG'	TATATATAT	INS	TATATATAT	0.122	mutect2,strelka	intron_variant	MODIFIER	fz	intron	fz	FBgn0001085
HUM-7	3L	14308881	TCG	'T'	TTTTTCGGA	INS	TTTTTCGGA	0	consensus	intron_variant	MODIFIER	fz	intron	fz	FBgn0001085
HUM-7	3L	14781599	CT	'C'	ACAACTTTT	INS	ACAACTTTT	0.114	strelka	intron_variant	MODIFIER	bmm	intron	bmm	FBgn0036449
HUM-7	3L	14821986	G	'GTA'	ATTAGTATA	INS	TATACTAAT	0.235	strelka	intron_variant	MODIFIER	CG17839	intron	CG17839	FBgn0036454
HUM-7	3L	14891160	AGT	'A'	CCCCAGTGT	INS	CCCCAGTGT	0.167	strelka	upstream_gene_variant	MODIFIER	CR45398	intergenic	intergenic	intergenic
HUM-7	3L	14920890	TA	'T'	GAAATAAAA	INS	GAAATAAAA	0.25	strelka	upstream_gene_variant	MODIFIER	DCX-EMAP	intron	DCX-EMAP	FBgn0259099
HUM-7	3L	15601415	CTG	'C'	CTGTCTGTG	INS	CTGTCTGTG	0.217	strelka	intron_variant	MODIFIER	RhoGAP71E	intron	RhoGAP71E	FBgn0036518
HUM-7	3L	15863946	GT	'G'	ATTGGTTTT	INS	ATTGGTTTT	0.28	strelka	3_prime_UTR_variant	MODIFIER	pHCl	3UTR	pHCl	FBgn0264908
HUM-7	3L	16002134	A	'AT'	TCCTATTTT	INS	AAAATAGGA	0.148	strelka	upstream_gene_variant	MODIFIER	mRpS31	intron	CG5830	FBgn0036556
HUM-7	3L	16207243	TCA	'T'	ATCATCATC	INS	ATCATCATC	0	consensus	intergenic_region	MODIFIER	CG33690-CG13073	intergenic	intergenic	intergenic
HUM-7	3L	17393608	CA	'C'	CTTTCAAAA	INS	CTTTCAAAA	0.129	strelka	upstream_gene_variant	MODIFIER	CG13731	intergenic	intergenic	intergenic
HUM-7	3L	17534950	CA	'C'	AATACAAAA	INS	AATACAAAA	0.263	strelka	upstream_gene_variant	MODIFIER	CR45165	intron	Nedd4	FBgn0259174
HUM-7	3L	17977963	ACAG	'A'	TGCAACAGC	INS	TGCAACAGC	0.167	strelka	downstream_gene_variant	MODIFIER	CR45921	intron	Eip75B	FBgn0000568
HUM-7	3L	18140148	TTA	'T'	TACGTTATA	INS	TACGTTATA	0.133	strelka	upstream_gene_variant	MODIFIER	CR44669	intron	geko	FBgn0020300
HUM-7	3L	18846308	CCT	'C'	TTCTCCTCT	INS	TTCTCCTCT	0.154	strelka	upstream_gene_variant	MODIFIER	Indy	intergenic	intergenic	intergenic
HUM-7	3L	19843256	ACAG	'A'	TACAACAGC	INS	TACAACAGC	0.0857	strelka	conservative_inframe_deletion	MODERATE	kto	exon_7	kto	FBgn0001324
HUM-7	3L	20589927	CT	'C'	CAGTCTTTT	INS	CAGTCTTTT	0.172	strelka	intergenic_region	MODIFIER	Rcd2-knrl	intergenic	intergenic	intergenic
HUM-7	3L	20771885	T	'TTCGGTGTTCTCA'	GGGATAAAT	INS	GGGATAAAT	0.75	strelka	upstream_gene_variant	MODIFIER	CG4074	intron	Pitslre	FBgn0016696
HUM-7	3L	21042660	A	'AT'	CTAAAGCTG	INS	CAGCTTTAG	0.194	strelka	intron_variant	MODIFIER	siz	intron	siz	FBgn0026179
HUM-7	3L	21277903	G	'GT'	CACCGTTTT	INS	AAAACGGTG	0.179	strelka	upstream_gene_variant	MODIFIER	AcCoAS	intron	AcCoAS	FBgn0012034
HUM-7	3L	21293470	AT	'A'	CTGGATTTT	INS	CTGGATTTT	0.167	strelka	upstream_gene_variant	MODIFIER	Cpr78Ca	intergenic	intergenic	intergenic
HUM-7	3L	21525876	AT	'A'	AACAATTTT	INS	AACAATTTT	0.152	strelka	upstream_gene_variant	MODIFIER	CR43877	intron	CG7611	FBgn0037094
HUM-7	3L	22704244	CA	'C'	ATGTCAAAA	INS	ATGTCAAAA	0.147	strelka	downstream_gene_variant	MODIFIER	CG45116	intergenic	intergenic	intergenic
HUM-7	3L	23503995	AT	'A'	TTTCATTTT	INS	TTTCATTTT	0.292	strelka	intergenic_region	MODIFIER	CG32230-AGO3	intergenic	intergenic	intergenic
HUM-7	3L	23869197	CTG	'C'	AACTCTGTT	INS	AACTCTGTT	0.294	strelka	intron_variant	MODIFIER	CG40470	intron	CG40470	FBgn0058470
HUM-7	3L	25047046	GTATCTTCTA	'G'	AGACGTATC	INS	AGACGTATC	0.167	strelka	intergenic_region	MODIFIER	CG40002-Set1	intergenic	intergenic	intergenic
HUM-7	3L	25311374	TACTCTG	'T'	AGGTTACTC	INS	AGGTTACTC	0.174	strelka	intron_variant	MODIFIER	CG45782	intron	CG45782	FBgn0267429
HUM-7	3L	27290079	CA	'C'	TATGCAAAA	INS	TATGCAAAA	0.182	strelka	intron_variant	MODIFIER	Dbp80	intron	Dbp80	FBgn0024804
HUM-7	3L	27411613	G	'GCTGTCAAGAATTGTGGCTCTTAT'	CACAGTCCA	INS	TGGACTGTG	0.286	strelka	intron_variant	MODIFIER	Dbp80	intron	Dbp80	FBgn0024804
HUM-7	3L	27411618	T	'TCA'	TCCATATTA	INS	TCCATATTA	0.267	strelka	intron_variant	MODIFIER	Dbp80	intron	Dbp80	FBgn0024804
HUM-7	3R	1296318	AAT	'A'	AAAAAATAT	INS	AAAAAATAT	0.114	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
HUM-7	3R	1966248	TA	'T'	AAACTAAAA	INS	AAACTAAAA	0.19	strelka	intron_variant	MODIFIER	CG45784	intron	Myo81F	FBgn0267431
HUM-7	3R	2136970	CA	'C'	GCCTCAAAA	INS	GCCTCAAAA	0.158	strelka	frameshift_variant	HIGH	CG45784	exon_17	Myo81F	FBgn0267431
HUM-7	3R	3865599	AAT	'A'	ATTGAATAT	INS	ATTGAATAT	0.25	strelka	intron_variant	MODIFIER	CG41099	intron	CG41099	FBgn0039955
HUM-7	3R	4955454	GGA	'G'	AGAGGGAGA	INS	AGAGGGAGA	0.167	strelka	upstream_gene_variant	MODIFIER	Ubc6	intergenic	intergenic	intergenic
HUM-7	3R	5415027	AGT	'A'	TGCGAGTGT	INS	TGCGAGTGT	0.185	strelka	upstream_gene_variant	MODIFIER	Orco	intron	CG14669	FBgn0037326
HUM-7	3R	5593742	GT	'G'	GTTCGTTTT	INS	GTTCGTTTT	0.2	strelka	3_prime_UTR_variant	MODIFIER	Vha26	3UTR	Vha26	FBgn0283535
HUM-7	3R	6877908	TG	'T'	TCTCTGGGG	INS	TCTCTGGGG	0.115	strelka	non_coding_transcript_exon_variant	MODIFIER	CR44931	exon_2	CR44931	FBgn0266236
HUM-7	3R	7282229	AGT	'A'	TGTGAGTGT	INS	TGTGAGTGT	0.3	strelka	upstream_gene_variant	MODIFIER	RacGAP84C	intron	rn	FBgn0267337
HUM-7	3R	7425403	TAC	'T'	CCACTACAC	INS	CCACTACAC	0.16	strelka	downstream_gene_variant	MODIFIER	CG34023	intergenic	intergenic	intergenic
HUM-7	3R	8354600	CAT	'C'	ATGTCATAT	INS	ATGTCATAT	0.192	strelka	upstream_gene_variant	MODIFIER	stck	intergenic	intergenic	intergenic
HUM-7	3R	8430940	TTG	'T'	GACTTTGTG	INS	GACTTTGTG	0.125	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
HUM-7	3R	8436631	AAC	'A'	TGCCAACAC	INS	TGCCAACAC	0.192	strelka	intron_variant	MODIFIER	CG45263	intron	CG45263	FBgn0266801
HUM-7	3R	8654982	GT	'G'	ACTTGTTTT	INS	ACTTGTTTT	0.133	strelka	3_prime_UTR_variant	MODIFIER	bel	3UTR	bel	FBgn0263231
HUM-7	3R	8815534	GGT	'G'	GTGGGGTGT	INS	GTGGGGTGT	0.103	strelka	3_prime_UTR_variant	MODIFIER	CG9821	3UTR	CG9821	FBgn0037636
HUM-7	3R	8835578	G	'GT'	GATAGTTTT	INS	AAAACTATC	0.129	strelka	downstream_gene_variant	MODIFIER	pyd	intron	pyd	FBgn0262614
HUM-7	3R	9766271	T	'TA'	ACTTTAAAA	INS	ACTTTAAAA	0.2	strelka	3_prime_UTR_variant	MODIFIER	MED6	3UTR	MED6	FBgn0024330
HUM-7	3R	9851545	GCA	'G'	ACTCGCACA	INS	ACTCGCACA	0.2	strelka	intron_variant	MODIFIER	Teh1	intron	Teh1	FBgn0037766
HUM-7	3R	10523967	CA	'C'	GCTCCAAAA	INS	GCTCCAAAA	0.211	strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
HUM-7	3R	10609877	G	'GT'	CCTCGTTTT	INS	AAAACGAGG	0.129	strelka	intron_variant	MODIFIER	hth	intron	hth	FBgn0001235
HUM-7	3R	10674543	GCA	'G'	TCACGCACA	INS	TCACGCACA	0.333	strelka	downstream_gene_variant	MODIFIER	CG6465	intergenic	intergenic	intergenic
HUM-7	3R	10898313	A	'AT'	ACGTATTTT	INS	AAAATACGT	0.278	strelka	upstream_gene_variant	MODIFIER	CG6621	ncRNA	CR45578	FBgn0267138
HUM-7	3R	11014431	CTG	'C'	AGCACTGTG	INS	AGCACTGTG	0.115	strelka	intron_variant	MODIFIER	CG34114	intron	CG34114	FBgn0083950
HUM-7	3R	11140193	AGT	'A'	CGTAAGTGT	INS	CGTAAGTGT	0.13	strelka	downstream_gene_variant	MODIFIER	CG4706	intergenic	intergenic	intergenic
HUM-7	3R	11281722	CGA	'C'	TGAGCGAGA	INS	TGAGCGAGA	0.143	strelka	intron_variant	MODIFIER	CR31386	ncRNA	CR31386	FBgn0051386
HUM-7	3R	11401013	CA	'C'	AATGCAAAA	INS	AATGCAAAA	0.116	strelka	3_prime_UTR_variant	MODIFIER	pros	3UTR	pros	FBgn0004595
HUM-7	3R	11533844	C	'CTA'	CCATCTATA	INS	CCATCTATA	0.208	strelka	3_prime_UTR_variant	MODIFIER	dpr4	3UTR	dpr4	FBgn0053512
HUM-7	3R	11805037	CT	'C'	CTTTCTTTT	INS	CTTTCTTTT	0.19	strelka	upstream_gene_variant	MODIFIER	ClC-a	intron	ClC-a	FBgn0051116
HUM-7	3R	12044066	AGCT	'A'	GAGCAGCTG	INS	GAGCAGCTG	0.238	strelka	downstream_gene_variant	MODIFIER	CG14736	intergenic	intergenic	intergenic
HUM-7	3R	12768065	AAT	'A'	TTAAAATAT	INS	TTAAAATAT	0.211	strelka	upstream_gene_variant	MODIFIER	CR44233	ncRNA	CR44232	FBgn0265163
HUM-7	3R	13010104	A	'AAT'	ACCCAATAT	INS	ATATTGGGT	0.185	strelka	upstream_gene_variant	MODIFIER	CtBP	intron	CG11656	FBgn0038109
HUM-7	3R	13014758	AAAAC	'A'	AAAAAAAAC	INS	AAAAAAAAC	0.148	mutect2	upstream_gene_variant	MODIFIER	CG8031	intron	CtBP	FBgn0020496
HUM-7	3R	13161980	TAG	'T'	GGCATAGAG	INS	GGCATAGAG	0.231	strelka	intron_variant	MODIFIER	timeout	intron	timeout	FBgn0038118
HUM-7	3R	13226932	C	'CA'	GAGACAAAA	INS	GAGACAAAA	0.128	strelka	3_prime_UTR_variant	MODIFIER	Ace	3UTR	Ace	FBgn0000024
HUM-7	3R	13253958	CGT	'C'	AAAGCGTGT	INS	AAAGCGTGT	0.269	strelka	intron_variant	MODIFIER	Ace	intron	Ace	FBgn0000024
HUM-7	3R	13631942	AAC	'A'	CGCTAACAC	INS	CGCTAACAC	0.138	strelka	5_prime_UTR_variant	MODIFIER	CG10841	5UTR	CG10841	FBgn0038163
HUM-7	3R	13973886	AT	'A'	TTTCATTTT	INS	TTTCATTTT	0.188	strelka	upstream_gene_variant	MODIFIER	rdx	ncRNA	CR43460	FBgn0263414
HUM-7	3R	14278869	GCT	'G'	TCCCGCTCT	INS	TCCCGCTCT	0.25	strelka	intron_variant	MODIFIER	trx	intron	trx	FBgn0003862
HUM-7	3R	14326445	AGT	'A'	TGCAAGTGT	INS	TGCAAGTGT	0.2	strelka	5_prime_UTR_variant	MODIFIER	Afti	5UTR	Afti	FBgn0038223
HUM-7	3R	14349110	C	'CGT'	TGCGCGTGT	INS	TGCGCGTGT	0.19	strelka	intron_variant	MODIFIER	NK7.1	intron	NK7.1	FBgn0024321
HUM-7	3R	14958818	AGT	'A'	TGTGAGTGT	INS	TGTGAGTGT	0.154	strelka	intergenic_region	MODIFIER	CR45598-CR45599	intergenic	intergenic	intergenic
HUM-7	3R	15021512	TTG	'T'	GCACTTGTG	INS	GCACTTGTG	0.25	strelka	intergenic_region	MODIFIER	CG14861-RpL10Aa	intergenic	intergenic	intergenic
HUM-7	3R	15712561	TG	'T'	TTTTTGGAG	INS	TTTTTGGAG	0.0968	mutect2	downstream_gene_variant	MODIFIER	CG5404	intergenic	intergenic	intergenic
HUM-7	3R	15921011	GGT	'G'	TACGGGTGT	INS	TACGGGTGT	0.158	strelka	5_prime_UTR_variant	MODIFIER	CG4221	exon_1	Fbxl7	FBgn0038385
HUM-7	3R	16197624	A	'ATG'	ACAAACTTT	INS	AAAGTTTGT	0.111	mutect2	downstream_gene_variant	MODIFIER	sra	intergenic	intergenic	intergenic
HUM-7	3R	16384335	GAT	'G'	CATAGATAT	INS	CATAGATAT	0.174	strelka	intron_variant	MODIFIER	ss	intron	ss	FBgn0003513
HUM-7	3R	16696398	GCA	'G'	ACCGGCACA	INS	ACCGGCACA	0.148	strelka	intron_variant	MODIFIER	Ubx	intron	Ubx	FBgn0003944
HUM-7	3R	18192449	T	'TA'	GTTTTAGAA	INS	GTTTTAGAA	0.25	strelka	upstream_gene_variant	MODIFIER	CG12321	intergenic	intergenic	intergenic
HUM-7	3R	18249728	GTA	'G'	ATACGTATA	INS	ATACGTATA	0.235	strelka	3_prime_UTR_variant	MODIFIER	14-3-3epsilon	3UTR	14-3-3epsilon	FBgn0020238
HUM-7	3R	18518611	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.182	strelka	intron_variant	MODIFIER	fru	intron	fru	FBgn0004652
HUM-7	3R	18577554	AT	'A'	TTTCATTTT	INS	TTTCATTTT	0.385	strelka	intron_variant	MODIFIER	CG7694	intron	fray	FBgn0023083
HUM-7	3R	18997729	GT	'G'	CCACGTTTT	INS	CCACGTTTT	0.19	strelka	intron_variant	MODIFIER	gukh	intron	gukh	FBgn0026239
HUM-7	3R	19550630	CGT	'C'	TGTGCGTGT	INS	TGTGCGTGT	0.13	strelka	intron_variant	MODIFIER	Dys	intron	Dys	FBgn0260003
HUM-7	3R	20093074	CGT	'C'	TGGTCGTGT	INS	TGGTCGTGT	0.136	strelka	intergenic_region	MODIFIER	Rh3-CG31206	intergenic	intergenic	intergenic
HUM-7	3R	20093074	CGTGT	'C'	TGGTCGTGT	INS	TGGTCGTGT	0.174	strelka	intergenic_region	MODIFIER	Rh3-CG31206	intergenic	intergenic	intergenic
HUM-7	3R	20248980	A	'ATTAT'	TAAAATTTT	INS	AAAATTTTA	0.125	strelka	upstream_gene_variant	MODIFIER	cic	intergenic	intergenic	intergenic
HUM-7	3R	20442524	TAC	'T'	AGTGTACAC	INS	AGTGTACAC	0.15	strelka	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
HUM-7	3R	20476183	TCA	'T'	ACACTCACA	INS	ACACTCACA	0.2	strelka	intron_variant	MODIFIER	Gfrl	intron	Gfrl	FBgn0262869
HUM-7	3R	20820214	CTGCTGCTGT	'C'	GCTGCTGCT	INS	GCTGCTGCT	0.211	mutect2	disruptive_inframe_deletion	MODERATE	CG17271	exon	CG17271	FBgn0038829
HUM-7	3R	21261702	CT	'C'	TGGCCTTTT	INS	TGGCCTTTT	0.111	mutect2,strelka	upstream_gene_variant	MODIFIER	CR45798	intron	ETHR	FBgn0038874
HUM-7	3R	21965663	AGT	'A'	GGCAAGTGT	INS	GGCAAGTGT	0.222	strelka	intron_variant	MODIFIER	Eip93F	intron	Eip93F	FBgn0264490
HUM-7	3R	22635763	TG	'T'	TTTTTGTTT	INS	TTTTTGTTT	0.0882	strelka	5_prime_UTR_variant	MODIFIER	loco	5UTR	loco	FBgn0020278
HUM-7	3R	22733149	GCT	'G'	TAAGGCTCT	INS	TAAGGCTCT	0.12	strelka	downstream_gene_variant	MODIFIER	CG45049	intron	Takl2	FBgn0039015
HUM-7	3R	22836125	TTG	'T'	GGGATTGTG	INS	GGGATTGTG	0.154	strelka	intergenic_region	MODIFIER	CR44350-CG4704	intergenic	intergenic	intergenic
HUM-7	3R	22848107	ATG	'A'	TCTCATGTG	INS	TCTCATGTG	0.0938	strelka	upstream_gene_variant	MODIFIER	CG4704	intergenic	intergenic	intergenic
HUM-7	3R	23272138	TA	'T'	GCGATAAAA	INS	GCGATAAAA	0.2	strelka	upstream_gene_variant	MODIFIER	orb	intron	orb	FBgn0004882
HUM-7	3R	23408698	GGT	'G'	GGATGGTGT	INS	GGATGGTGT	0.13	strelka	3_prime_UTR_variant	MODIFIER	CG4374	3UTR	CG4374	FBgn0039078
HUM-7	3R	23774238	T	'TG'	AACATTTTT	INS	AACATTTTT	0.125	strelka	3_prime_UTR_variant	MODIFIER	Nup98-96	3UTR	Nup98-96	FBgn0039120
HUM-7	3R	24213788	CACA	'C'	GAACCACAA	INS	GAACCACAA	0.238	strelka	downstream_gene_variant	MODIFIER	CG17786	intron	twin	FBgn0011725
HUM-7	3R	24453874	TTG	'T'	TATTTTGTG	INS	TATTTTGTG	0.143	strelka	intron_variant	MODIFIER	nAChRalpha1	intron	nAChRalpha1	FBgn0000036
HUM-7	3R	24461238	GGT	'G'	TATGGGTGT	INS	TATGGGTGT	0.111	strelka	upstream_gene_variant	MODIFIER	nAChRalpha1	intergenic	intergenic	intergenic
HUM-7	3R	24484287	C	'CAAGCGCAACATAA'	TCTACATTT	INS	TCTACATTT	0.2	strelka	upstream_gene_variant	MODIFIER	nAChRalpha2	intergenic	intergenic	intergenic
HUM-7	3R	24520897	TCA	'T'	ACACTCACA	INS	ACACTCACA	0.231	strelka	3_prime_UTR_variant	MODIFIER	Pp1alpha-96A	3UTR	Pp1alpha-96A	FBgn0003134
HUM-7	3R	24764024	A	'AT'	TTACATTTT	INS	AAAATGTAA	0.2	strelka	downstream_gene_variant	MODIFIER	asp	intron	AstA	FBgn0015591
HUM-7	3R	25108528	TA	'T'	TCACTAAAA	INS	TCACTAAAA	0.211	strelka	splice_region_variant&intron_variant	LOW	CG34027	intron	CG34027	FBgn0054027
HUM-7	3R	25152935	ATG	'A'	GTGAATGTG	INS	GTGAATGTG	0.15	strelka	intergenic_region	MODIFIER	danr-lobo	intergenic	intergenic	intergenic
HUM-7	3R	26198432	AAC	'A'	ATCAAACAC	INS	ATCAAACAC	0.12	strelka	intron_variant	MODIFIER	CR44320	ncRNA	CR44320	FBgn0265379
HUM-7	3R	26820342	AAC	'A'	TAGCAACAC	INS	TAGCAACAC	0.136	strelka	intron_variant	MODIFIER	Tl	intron	Tl	FBgn0262473
HUM-7	3R	26879281	TCAG	'T'	GGGGTCAGC	INS	GGGGTCAGC	0.15	strelka	upstream_gene_variant	MODIFIER	Rb97D	intron	ro	FBgn0003267
HUM-7	3R	27445501	GGT	'G'	GGCAGGTGT	INS	GGCAGGTGT	0.158	strelka	upstream_gene_variant	MODIFIER	CG44290	intergenic	intergenic	intergenic
HUM-7	3R	28704677	G	'GT'	ATCAGTTTT	INS	AAAACTGAT	0.111	strelka	intron_variant	MODIFIER	htt	intron	htt	FBgn0027655
HUM-7	3R	28712935	CAT	'C'	AGCTCATAT	INS	AGCTCATAT	0.15	strelka	intron_variant	MODIFIER	htt	intron	htt	FBgn0027655
HUM-7	3R	29357462	AT	'A'	TTTTATTTT	INS	TTTTATTTT	0.3	strelka	upstream_gene_variant	MODIFIER	CR45547	intergenic	intergenic	intergenic
HUM-7	3R	29379990	CT	'C'	GTCCCTTTT	INS	GTCCCTTTT	0.222	strelka	intron_variant	MODIFIER	Ptp99A	intron	Ptp99A	FBgn0004369
HUM-7	3R	30353540	GA	'G'	AAGGGAAAA	INS	AAGGGAAAA	0.182	strelka	upstream_gene_variant	MODIFIER	hdc	intron	hdc	FBgn0010113
HUM-7	3R	30538839	A	'AAT'	TGTAAATAT	INS	ATATTTACA	0.174	strelka	upstream_gene_variant	MODIFIER	tmod	intron	tmod	FBgn0082582
HUM-7	3R	30987122	T	'TAC'	TCCATACAC	INS	TCCATACAC	0.2	strelka	downstream_gene_variant	MODIFIER	CR46116	intron	5-HT7	FBgn0004573
HUM-7	3R	31845244	CA	'C'	TGTACAAAA	INS	TGTACAAAA	0.185	strelka	3_prime_UTR_variant	MODIFIER	RhoGAP100F	3UTR	RhoGAP100F	FBgn0039883
HUM-7	4	155608	G	'GT'	TGTTGTTTT	INS	AAAACAACA	0.2	strelka	downstream_gene_variant	MODIFIER	CG32006	intron	CG31997	FBgn0051997
HUM-7	4	519081	AAT	'A'	AAACAATAT	INS	AAACAATAT	0.12	strelka	intron_variant	MODIFIER	zfh2	intron	zfh2	FBgn0004607
HUM-7	4	743641	AAT	'A'	TATAAATAT	INS	TATAAATAT	0.25	strelka	intron_variant	MODIFIER	bt	intron	bt	FBgn0005666
HUM-7	4	871178	A	'AT'	TACAATTTT	INS	AAAATTGTA	0.111	strelka	3_prime_UTR_variant	MODIFIER	unc-13	exon_2	CR43425	FBgn0263344
HUM-7	4	1106659	TA	'T'	TATGTAAAA	INS	TATGTAAAA	0.231	strelka	intron_variant	MODIFIER	sv	intron	sv	FBgn0005561
HUM-7	X	808576	T	'TG'	TTTGTGGGG	INS	TTTGTGGGG	0.211	strelka	3_prime_UTR_variant	MODIFIER	CG43867	3UTR	CG43867	FBgn0264449
HUM-7	X	3398814	TTGGCC	'T'	GCGTTTGGC	INS	GCGTTTGGC	0	consensus	intron_variant	MODIFIER	CR44999	intron	CG12535	FBgn0029657
HUM-7	X	3693610	ACAG	'A'	CTCAACAGC	INS	CTCAACAGC	0.13	strelka	conservative_inframe_deletion	MODERATE	Mnt	exon_2	Mnt	FBgn0023215
HUM-7	X	4070849	TAAGGGGTACCATCATTA	'T'	TTGATAAGG	INS	TTGATAAGG	0.214	strelka	intergenic_region	MODIFIER	CR45482-CG43689	intergenic	intergenic	intergenic
HUM-7	X	7903742	G	'GT'	TGTGGTTTT	INS	AAAACCACA	0.167	strelka	3_prime_UTR_variant	MODIFIER	dpr14	3UTR	dpr14	FBgn0029974
HUM-7	X	10656263	GCA	'G'	ACACGCACA	INS	ACACGCACA	0.385	strelka	upstream_gene_variant	MODIFIER	CG2111	intron	X11Lbeta	FBgn0052677
HUM-7	X	10842745	TATATAC	'T'	TATATATAT	INS	TATATATAT	0.25	strelka	3_prime_UTR_variant	MODIFIER	CG15209	3UTR	CG32669	FBgn0052669
HUM-7	X	14789080	CAT	'C'	TATACATAT	INS	TATACATAT	0.188	strelka	3_prime_UTR_variant	MODIFIER	rut	3UTR	rut	FBgn0003301
HUM-7	X	15352562	GCT	'G'	TCTCGCTCT	INS	TCTCGCTCT	0.188	strelka	3_prime_UTR_variant	MODIFIER	acj6	3UTR	acj6	FBgn0000028
HUM-7	X	17947303	AGT	'A'	AGAGAGTGT	INS	AGAGAGTGT	0.143	strelka	downstream_gene_variant	MODIFIER	Sh	intron	Sh	FBgn0003380
HUM-7	X	18474169	CA	'C'	TGAACAAAA	INS	TGAACAAAA	0.231	strelka	intron_variant	MODIFIER	CG32547	intron	CG32547	FBgn0052547
HUM-7	X	19152377	TA	'T'	TCAGTAAAA	INS	TCAGTAAAA	0.214	strelka	intron_variant	MODIFIER	RhoGAP18B	intron	RhoGAP18B	FBgn0261461
HUM-7	X	21393879	GT	'G'	ACTAGTTTT	INS	ACTAGTTTT	0.364	strelka	downstream_gene_variant	MODIFIER	mst	intergenic	intergenic	intergenic
HUM-7	X	22431264	TTTCGATGTAAA	'T'	TCGCTTTCG	INS	TCGCTTTCG	0.171	strelka	intergenic_region	MODIFIER	CG41562-CG14621	intergenic	intergenic	intergenic
