% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/geneEnrichment.R
\name{bpAllGenes}
\alias{bpAllGenes}
\title{Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)}
\usage{
bpAllGenes(
  ...,
  gene_lengths_in = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
  affected_genes = system.file("extdata", "all_genes_filtered.txt", package =
    "svBreaks"),
  n = 3,
  genome_length = 118274340,
  outfile = NULL
)
}
\description{
Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)
}
\keyword{enrichment}
