# Plotting functions for structural variant breakpoint data

This package contains a collection of functions to explore breakpoint data produced by svParser i.e. the `all_bps.txt` or `all_bps_filtered.bps` files. Input to svBreaks should contain the following information:

    event bp_number sample  genotype  chrom1  bp1 gene1 feature1  chrom2  bp2 gene2 feature2 type length(kb)
    1   bp_1    A373R11 germline_recurrent  2L  73837   galectin    exon_2  2L  73896   galectin    exon_2  DEL 0.1

This tool is under constant development. Please feel free to contact me, or raise an issue if you encounter any problems.

## Installation

Install from github:

    git clone https://github.com/nriddiford/svBreaks.git

Start an R session, and install package:

    library(devtools)
    install_github("nriddiford/svBreaks")
    library(svBreaks)