# Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)

`bpAllGenes.Rd`

Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)

    bpAllGenes(
      ...,
      gene_lengths_in = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
      affected_genes = system.file("extdata", "all_genes_filtered.txt", package =
        "svBreaks"),
      n = 3,
      genome_length = 118274340,
      outfile = NULL
    )