Supplementary Table 4: List of publicly-available genomes included as a global background dataset. Metadata for these isolates are available on Neisseria pubMLST. ERR016988 ERR016989 ERR016992 ERR017003 ERR017004 ERR017007 ERR017011 ERR017012 ERR017016 ERR017017 ERR017018 ERR017020 ERR017021 ERR017024 ERR017028 ERR017029 ERR017033 ERR017036 ERR017037 ERR017039 ERR017040 ERR017041 ERR017047 ERR017049 ERR017052 ERR017055 ERR017056 ERR017058 ERR017059 ERR017061 ERR017066 ERR017067 ERR017068 ERR017069 ERR017073 ERR018864 ERR018866 ERR018867 ERR018870 ERR018872 ERR018874 ERR025909 ERR028666 ERR035329 ERR036086 ERR036100 ERR045768 ERR045770 ERR045771 ERR045772 ERR051676 ERR052738 ERR052742 ERR052746 ERR052748 ERR052751 ERR052770 ERR052777 ERR052784 ERR052786 ERR052787 ERR052802 ERR052805 ERR052806 ERR052809 ERR052812 ERR052820 ERR052825 ERR052828 ERR063496 ERR086229 ERR1134881 ERR1134883 ERR1134890 ERR1134899 ERR1134910 ERR1134920 ERR1134947 ERR1134973 ERR1134975 ERR1134977 ERR1134979 ERR1134981 ERR1134983 ERR1134984 ERR1161434 ERR1161482 ERR1161489 ERR1292415 ERR1292483 ERR1292490 ERR1292508 ERR133696 ERR133697 ERR133702 ERR133703 ERR133705 ERR133710 ERR133715 ERR133718 ERR133719 ERR133721 ERR133722 ERR133727 ERR133729 ERR133732 ERR133733 ERR133738 ERR133756 ERR133757 ERR133759 ERR133761 ERR133762 ERR133767 ERR133769 ERR133773 ERR133774 ERR133778 ERR133796 ERR137099 ERR137104 ERR137106 ERR137111 ERR137116 ERR137120 ERR137123 ERR137125 ERR137126 ERR137128 ERR137136 ERR137140 ERR137141 ERR137146 ERR137162 ERR137167 ERR137169 ERR137183 ERR137186 ERR1389344 ERR1389437 ERR1389446 ERR1389447 ERR1389448 ERR1389459 ERR1389460 ERR1389465 ERR144495 ERR144505 ERR144524 ERR1554057 ERR1554135 ERR1554140 ERR1554152 ERR1554178 ERR1554237 ERR1554238 ERR1675928 ERR170763 ERR170778 ERR170805 ERR170898 ERR170947 ERR171024 ERR171026 ERR1717560 ERR1717581 ERR1717594 ERR176024 ERR1805704 ERR1805705 ERR1960553 ERR1960557 ERR1960590 ERR1960593 ERR1960616 ERR1994447 ERR1994479 ERR1994539 ERR1994685 ERR1994705 ERR1994719 ERR1994722 ERR1994724 ERR1994725 ERR1994731 ERR1994734 ERR2113611 ERR2113618 ERR2113640 ERR2113643 ERR2113651 ERR2188540 ERR2188544 ERR222754 ERR222775 ERR222788 ERR222792 ERR222795 ERR222802 ERR222817 ERR222832 ERR222859 ERR222867 ERR2258906 ERR237235 ERR237344 ERR2619202 ERR2619214 ERR2619219 ERR2619223 ERR2619224 ERR2619232 ERR2619254 ERR2619259 ERR2619265 ERR2619269 ERR2619272 ERR2619278 ERR2619282 ERR2619287 ERR2619294 ERR2619299 ERR2619304 ERR2619309 ERR2619310 ERR2619312 ERR2619317 ERR2619334 ERR2619339 ERR2619344 ERR2619348 ERR2619349 ERR2619352 ERR2619357 ERR2619362 ERR2619363 ERR2619365 ERR2619367 ERR2619370 ERR2619377 ERR2619393 ERR2619440 ERR2619454 ERR2619460 ERR2619476 ERR2619477 ERR2619489 ERR2619495 ERR2619499 ERR2619508 ERR2619511 ERR2619560 ERR2619561 ERR2619569 ERR2619579 ERR2619591 ERR2619617 ERR2619655 ERR2619656 ERR2619681 ERR278696 ERR294461 ERR310958 ERR310976 ERR310986 ERR310987 ERR311006 ERR314130 ERR314177 ERR314185 ERR314206 ERR314243 ERR314248 ERR315210 ERR351566 ERR351592 ERR351609 ERR351612 ERR351620 ERR351623 ERR351624 ERR351627 ERR351630 ERR351635 ERR351684 ERR351751 ERR351753 ERR405869 ERR405879 ERR405888 ERR405891 ERR405900 ERR405972 ERR405991 ERR405992 ERR406005 ERR406008 ERR406028 ERR466879 ERR466897 ERR466958 ERR472994 ERR473044 ERR473166 ERR473239 ERR519713 ERR519718 ERR519720 ERR519729 ERR519732 ERR519752 ERR519754 ERR519756 ERR519760 ERR519763 ERR519766 ERR519772 ERR519783 ERR519785 ERR519787 ERR519789 ERR519790 ERR519791 ERR519796 ERR519798 ERR519806 ERR519809 ERR519810 ERR519826 ERR519840 ERR519863 ERR522733 ERR522746 ERR522794 ERR522799 ERR557598 ERR557616 ERR557636 ERR557640 ERR557642 ERR557643 ERR557644 ERR557646 ERR557647 ERR557649 ERR557650 ERR557651 ERR557652 ERR557674 ERR557677 ERR557696 ERR557698 ERR557700 ERR557702 ERR557703 ERR557704 ERR557714 ERR557721 ERR557727 ERR557729 ERR557733 ERR557747 ERR557749 ERR557755 ERR557761 ERR557842 ERR557851 ERR557868 ERR557889 ERR557897 ERR557917 ERR557979 ERR558041 ERR558045 ERR558064 ERR654721 ERR654743 ERR654746 ERR654766 ERR654793 ERR847087 ERR847111 ERR847142 ERR847161 ERR847167 ERR903416 ERR903431 ERR903497 ERR903499 ERR903529 ERR903572 ERR903588 ERR903592 ERR903593 ERR903631 ERR903634 ERR903637 ERR903638 ERR903647 ERR903721 ERR903739 ERR903746 ERR957617 ERR957622 ERR976844 ERR976864 ERR976872 ERR977057 ERR977557 ERR977558 ERR985657 ERR985659 ERR985735 ERR985738 ERR985773 ERR985812 ERR985828 ERR985866 ERR985878 ERR985937 ERR985942 ERR985986 ERR986024 SRR7352646 SRR7352647 SRR7513494 SRR7513495