# Spok block paper code
Scripts and snakemake pipelines associated with the paper of [Vogan et al. "The *Enterprise*: A massive transposon carrying *Spok* meiotic drive genes", bioRxiv](https://www.biorxiv.org/content/10.1101/2020.03.25.007153v1).

The original code can be found in [a GitHub repository](https://github.com/johannessonlab/SpokBlockPaper), commit `a81fe0c`. Most directories correspond to a Snakemake pipeline, except `scripts`. For space reasons, here I remove all the genomes from the `data` directories of each pipeline. However they are also available in Dryad Digital Repository:

Ament-Velásquez, S. L., Vogan, A. A., Bastiaans, E., Wallerman, O., Saupe, S. J., Suh, A., & Johannesson, H. (2021). The Enterprise, A massive transposon carrying Spok meiotic drive genes, Dryad, Dataset, https://doi.org/10.5061/dryad.4tmpg4f8m