Select genes which have core promoter shift across different experiments.

Selects genes which have multiple core promoters and undergo core promoter shifting across different experiments. Generates gene list with Ds (degree of shift) value (Lu et al., 2019), p value and adjusted p value.

shiftPromoter(object, comparePairs, pval=0.01)

# S4 method for TSSr
shiftPromoter(object, comparePairs, pval = 0.01)

Arguments

object	A TSSr object.
comparePairs	Specified list of sample pairs for comparison.
pval	Genes with adjusted p value >= pval will be returned. Default value = 0.01.

Examples

# \donttest{
shiftPromoter(exampleTSSr,comparePairs=list(c("control","treat")), pval = 0.01)
#> 
#> Calculating core promoter shifts...
# }