Creating bed files of clusters — exportClustersToBed • TSSr

Creates bed files of clusters.

exportClustersToBed(object, data = "consensusClusters", assigned = TRUE)

# S4 method for TSSr
exportClustersToBed(object, data = "consensusClusters", assigned = TRUE)

Arguments

object	A TSSr object.
data	Specify which data will be exported: "tagClusters" or "consensusClusters". Default is "consensusClusters".
assigned	Specify which consensus clusters will be exported. Used only if data = "consensusClusters. Default is TRUE.

Examples

# \donttest{
exportTSStoBedgraph(exampleTSSr, data = "tagClusters")
#> Error in `[.data.table`(tss.dt, , .SD, .SDcols = c("chr", "pos", "strand",     sampleLabelsMerged[i])): Some items of .SDcols are not column names: [control]
exportTSStoBedgraph(exampleTSSr, dataexampleTSSr = "consensusClusters")
#> Error in exportTSStoBedgraph(exampleTSSr, dataexampleTSSr = "consensusClusters"): unused argument (dataexampleTSSr = "consensusClusters")
# }