Package: TSSr
Type: Package
Title: TSS sequencing data analysis
Version: 0.1.0
biocViews: Software, Transcription, Coverage, GeneExpression,
        GeneRegulation, PeakDetection, DataImport, DataRepresentation,
        Transcriptomics, Sequencing, Annotation, GenomeBrowsers,
        Normalization, Preprocessing, Visualization
Depends: R (>= 3.4)
Imports: stringr, rtracklayer,ggplot2, GenomicFeatures, Gviz, DESeq2,
        BSgenome.Scerevisiae.UCSC.sacCer3, calibrate,ggfortify, IRanges,
        GenomicRanges, Rsamtools, GenomicAlignments, GenomeInfoDb,
        BiocGenerics, data.table, parallel, methods, grDevices, graphics, stats, utils
Author: Zhaolian Lu <zhaolian.lu@slu.edu>, Keenan Berry <keenan.berry@slu.edu>, 
        Tae-Hyuk (Ted) Ahn <ted.ahn@slu.edu>, Zhenguo Lin <zhenguo.lin@slu.edu>
Maintainer: Zhaolian Lu <zhaolian.lu@slu.edu>
Description: Identification of transcription start sites, normalization, filtering,
              TSS clustering and downstream analysis of TSSs and core promoters.
License: file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
