# Plot gene differential expressions

`plotDE.Rd`

Vocano plots of gene differential expression (with DESeq2 method) results.

    plotDE(object, withGeneName = "TRUE",xlim, ylim)

    # S4 method for TSSr
    plotDE(object, withGeneName = "TRUE", xlim = c(-2.5, 2.5), ylim = c(0, 10))

## Arguments

object | A TSSr object.
withGeneName | Specify whether to display names for genes which are differentially expressed. Default is "TRUE".
xlim | Only enes of which log2FoldChange value within the xlim range are plotted. Default xlim = c(-2.5, 2.5).
ylim | Only genes of which -log10(pvalue) within the ylim range are plotted. Default ylim = c(0, 10).

## Examples

    # \donttest{
    plotDE(exampleTSSr, withGeneName = "TRUE")#> Plotting DE graphs...#> pdf
    #>   2 plotDE(exampleTSSr, withGeneName = "FALSE")#> Plotting DE graphs...#> pdf
    #>   2 # }