Internal function

Internal function

partitionGenome(genome, granges.extended_large, granges.extended,
  GENOME.WINDOW.SIZE, GENOME.WINDOW.SLIDING)

Arguments

genome

A DNAStringSet object. Ideally, the sequence of an entire genome, obtained for instance by running Biostrings::getSeq(BSgenome.Celegans.UCSC.ce11::BSgenome.Celegans.UCSC.ce11).
granges.extended_large

A GRanges object.
granges.extended

A GRanges object. Biostrings::getSeq(BSgenome.Celegans.UCSC.ce11::BSgenome.Celegans.UCSC.ce11).
GENOME.WINDOW.SIZE

An integer. The width of the bins to split the GRanges objects in (default 100).
GENOME.WINDOW.SLIDING

An integer. The increment between bins over GRanges (default 2).

Value

granges.partionned A Granges object corresponding to the binned genome.