Internal function

Internal function

partitionBin(grange, genome, BIN.WINDOW.SIZE, BIN.WINDOW.SLIDING)

Arguments

grange

A GRanges object of length 1
genome

A DNAStringSet object. Ideally, the sequence of an entire genome, obtained for instance by running Biostrings::getSeq(BSgenome.Celegans.UCSC.ce11::BSgenome.Celegans.UCSC.ce11).
BIN.WINDOW.SIZE

Integer The width of the bins to split each primary bin in (default 60).
BIN.WINDOW.SLIDING

Integer The increment between secondary bins (default 5).

Value

list A GRanges object