Internal function

getCovMatrix(g, bw, norm = "none", verbose = FALSE)

Arguments

g

GRanges to map a track onto

bw

RleList a track from rtraklayer::import

norm

character Should the signal be normalized ('none', 'zscore' or 'log2')?

verbose

Boolean Should the function be verbose?

Value

A square numerical matrix of signal values over the GRanges