# Generated by roxygen2: do not edit by hand

S3method(getPeriodicity,DNAStringSet)
S3method(getPeriodicity,GRanges)
S3method(plotAggregateCoverage,CompressedRleList)
S3method(plotAggregateCoverage,SimpleRleList)
S3method(plotAggregateCoverage,list)
export(alignToTSS)
export(deconvolveBidirectionalPromoters)
export(generatePeriodicityTrack)
export(getCovMatrix)
export(getPeriodicity)
export(na.remove)
export(na.replace)
export(namedListToLongFormat)
export(normalizeHistogram)
export(plotAggregateCoverage)
export(plotPeriodicityResults)
export(scaleBigWigs)
export(withSeq)
import(Biostrings)
import(GenomeInfoDb)
import(GenomicRanges)
import(IRanges)
import(S4Vectors)
import(ggplot2)
import(magrittr)
import(parallel)
import(stats)
importFrom(parallel,mclapply)
importFrom(rtracklayer,export.bw)
importFrom(stats,dist)
importFrom(stats,spectrum)
importFrom(zoo,rollmean)
