A function to plot a computed Vmat

A function to plot a computed Vmat

# S3 method for default
plotVmat(Vmat, pdf = NULL, HM.COLOR.CUTOFF = 90,
  colors = c(colorRampPalette(rev(RColorBrewer::brewer.pal("Spectral", n
  = 10))[1:5])(30),
  colorRampPalette(rev(RColorBrewer::brewer.pal("Spectral", n =
  10))[6:10])(30)), breaks = NULL, xlim = c(-250, 250), ylim = c(50,
  300), main = "", xlab = "Distance from center of elements",
  ylab = "Fragment length", ...)

Arguments

Vmat	A computed Vmat (should be normalized)
pdf	string save the plot in a pdf
HM.COLOR.CUTOFF	Integer should be between 0 and 100. Used to automatically scale the range of colors (ebst to keep between 90 and 100)
colors	a vector of colors
breaks	a vector of breaks. length(breaks) == length(colors) + 1
xlim	vector of two integers x limits
ylim	vector of two integers y limits
main	string Title of the plot
xlab	string x-axis label
ylab	string y-axis label

Value

A Vmat ggplot