A function to compute nucleosome enrichment of a Vmat. Should only be used internally.

A function to compute nucleosome enrichment of a Vmat. Should only be used internally.

computeNucleosomeEnrichmentOverBackground(Vmat, background = NULL,
  plus1_nuc_only = FALSE, minus1_nuc = list(c(xmin = -150, xmax = -50),
  c(ymin = 165, ymax = 270)), minus1_nuc_neg = list(c(xmin = -150, xmax =
  -50), c(ymin = 50, ymax = 145)), plus1_nuc = list(c(xmin = 60, xmax =
  160), c(ymin = 165, ymax = 270)), plus1_nuc_neg = list(c(xmin = 60,
  xmax = 160), c(ymin = 50, ymax = 145)), ...)

Arguments

Vmat	A Vmat computed by nucleosomeEnrichment function
background	a background Vmat
plus1_nuc_only	Should compute nucleosome enrichment only for +1 nucleosome?
minus1_nuc	list where the -1 nucleosome is located
minus1_nuc_neg	where the background of the -1 nucleosome is located
plus1_nuc	where the +1 nucleosome is located
plus1_nuc	where the background of the +1 nucleosome is located

Value

list