# Generated by roxygen2: do not edit by hand

S3method(getChromSizes,GRanges)
S3method(getChromSizes,default)
S3method(nucleosomeEnrichment,GRanges)
S3method(nucleosomeEnrichment,default)
S3method(plotVmat,GRanges)
S3method(plotVmat,default)
S3method(plotVmat,list)
export(alignToTSS)
export(computeNucleosomeEnrichmentOverBackground)
export(computeVmat)
export(deconvolveBidirectionalPromoters)
export(getChromSizes)
export(getFragmentsDistribution)
export(importPEBamFiles)
export(namedListToLongFormat)
export(normalizeVmat)
export(nucleosomeEnrichment)
export(plotVmat)
export(scaleVmat)
export(setColNames)
export(shiftATACGranges)
export(shuffleGRanges)
export(shuffleVmat)
export(simplifyGRanges)
import(GenomeInfoDb)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(RColorBrewer)
import(Rsamtools)
import(S4Vectors)
import(ggplot2)
import(magrittr)
import(parallel)
import(reshape2)
importFrom(zoo,rollmean)
